HHsearch alignment for GI: 254780725 and conserved domain: TIGR03499
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.40 E-value=1.5e-06 Score=59.42 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCCEEECCC--------CCHHH----HHHHHHHCCCCC--CCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999999976562643189--------99899----999763102332--223456753799974698877568999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLIEP--------LSVAD----IINSISAIFTPQ--EEGKGSSGCSISFIGSRGGVGSSTIAHNCA 183 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~P--------~~~~~----l~~ai~~~~~~~--~~~~~~~grvIav~g~KGGvGkTTiA~nLA 183 (427)
T Consensus 137 ~~l~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvG-PTGVGKTTTiAKLA 215 (282)
T TIGR03499 137 AKLYERLEEAGVSEELARELLEKLPERADAESAWRWLREALENMLPVKPEEDEILEQGGVIALVG-PTGVGKTTTLAKLA 215 (282)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHH
T ss_conf 99999999869999999999997460299789999999999964777887655445672799977-88875788999999
Q ss_pred HHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHH
Q ss_conf 9999626-994999978798986033438998789888631845612433765320248980687248761203207999
Q gi|254780725|r 184 FSIASVF-AMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEK 262 (427)
Q Consensus 184 ~~LA~~~-~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~ 262 (427)
T Consensus 216 a~~~l~~~~~~V~lIT~DtyRigA~eQL-----k~ya~il--------------------~vp~~v---------v~~~~ 261 (282)
T TIGR03499 216 ARFVLEHGKKKVALITTDTYRIGAVEQL-----KTYAKIL--------------------GVPVKV---------ARDPK 261 (282)
T ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHH-----HHHHHHH--------------------CCEEEE---------ECCHH
T ss_conf 9999973899679998077767899999-----9999995--------------------974899---------39999
Q ss_pred HHHHHHHHHHHCCCEEEECCCC
Q ss_conf 9999899985128889973888
Q gi|254780725|r 263 MIVPVLDILEQIFPLVILDVPH 284 (427)
Q Consensus 263 ~l~~ll~~l~~~yd~VIiD~p~ 284 (427)
T Consensus 262 ~l~~~l~~~~-~~d~IlIDTaG 282 (282)
T TIGR03499 262 ELAKALERLR-DKDLILIDTAG 282 (282)
T ss_pred HHHHHHHHCC-CCCEEEEECCC
T ss_conf 9999998657-98999981979