HHsearch alignment for GI: 254780725 and conserved domain: cd00156
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers.
Probab=99.41 E-value=8.6e-12 Score=91.67 Aligned_cols=108 Identities=17% Similarity=0.280 Sum_probs=90.7
Q ss_pred ECCHH-HHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 38989-99999988641100202237-30699899999986189984999980598767788999888532899808998
Q gi|254780725|r 35 CVTDT-LYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 35 ~~~~~-~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
T Consensus 3 VDD~~~~~~~l~~~L~~-----~g~~v~~a~~g~~al~~~~~~-~~dlvi~D~~mP~~~G~el~~~ir~~-~~~~pvI~l 75 (113)
T cd00156 3 VDDDPLIRELLRRLLEK-----EGYEVVEAEDGEEALALLAEE-KPDLILLDIMMPGMDGLELLRRIRKR-GPDIPIIFL 75 (113)
T ss_pred ECCCHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 92729999999999998-----899999989999999998757-99999977999898726999999985-899959999
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 1687189999999765626431899989999976310
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
T Consensus 76 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~ 112 (113)
T cd00156 76 TAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 7878999999999768978996989999999999986