HHsearch alignment for GI: 254780725 and conserved domain: cd01121
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.64 E-value=0.16 Score=28.59 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 137 LSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 137 ~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
T Consensus 66 Tgi~ElDRVLGGGiV--------pGS-vvLlgGePGIGKSTLLLQia~~la~-~~~~vLYvSG 118 (372)
T cd01121 66 TGIEELDRVLGGGLV--------PGS-VILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSG 118 (372)
T ss_pred CCCHHHHHHHCCCCC--------CCE-EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 783666540057730--------671-7998259988688999999999986-3993899824