HHsearch alignment for GI: 254780725 and conserved domain: cd01122
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.12 E-value=0.0032 Score=38.98 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 67537999746988775689999999999626994999978798986
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGT 205 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~ 205 (427)
T Consensus 28 ~~Ge-L~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~ 73 (271)
T cd01122 28 RKGE-LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVR 73 (271)
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 9980-899996899869999999999999976990899970499999