HHsearch alignment for GI: 254780725 and conserved domain: cd01124

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.

Probab=92.72  E-value=0.23  Score=27.51  Aligned_cols=36  Identities=17%  Similarity=0.226  Sum_probs=29.7

Q ss_pred             EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf             9746988775689999999999626994999978798
Q gi|254780725|r  166 FIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP  202 (427)
Q Consensus       166 v~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~  202 (427)
T Consensus         3 Li~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~   38 (187)
T cd01124           3 LLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEES   38 (187)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC
T ss_conf             58768999999999999999987-6997899995079