HHsearch alignment for GI: 254780725 and conserved domain: cd01393

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06  E-value=0.011  Score=35.64  Aligned_cols=47  Identities=13%  Similarity=0.153  Sum_probs=34.7

Q ss_pred             CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEEECCCCCC
Q ss_conf             456753799974698877568999999999962-----699499997879898
Q gi|254780725|r  157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV-----FAMETLLADLDLPYG  204 (427)
Q Consensus       157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~-----~~~~VlLvDlDl~~g  204 (427)
T Consensus        15 Gip~G~ItEi~G-~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~   66 (226)
T cd01393          15 GIPTGRITEIFG-EFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR   66 (226)
T ss_pred             CCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf             988883999999-9999899999999999854221169996199995577531