HHsearch alignment for GI: 254780725 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06 E-value=0.011 Score=35.64 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEEECCCCCC
Q ss_conf 456753799974698877568999999999962-----699499997879898
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV-----FAMETLLADLDLPYG 204 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~-----~~~~VlLvDlDl~~g 204 (427)
T Consensus 15 Gip~G~ItEi~G-~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~ 66 (226)
T cd01393 15 GIPTGRITEIFG-EFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR 66 (226)
T ss_pred CCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf 988883999999-9999899999999999854221169996199995577531