HHsearch alignment for GI: 254780725 and conserved domain: cd01878
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.19 E-value=0.84 Score=24.10 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99986201254357877688-99999999999981987675389995658987
Q gi|254780725|r 291 QEVLTLSDKVVITTSLDLAG-LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 291 ~~~L~~AD~vviV~~p~~~s-lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
T Consensus 115 le~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~ 167 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99997398999999799853667799999999980655576078886704799