HHsearch alignment for GI: 254780725 and conserved domain: cd01883
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=94.33 E-value=0.15 Score=28.67 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=49.0
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHH-------HHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 1288899738888--89899999862012543578776889-------999999999998198767538999565898
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGL-------RNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~sl-------r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
T Consensus 75 ~~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGi--k~iIVavNKMD~v 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGV--KQLIVAVNKMDDV 150 (219)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC--CEEEEEEECCCCC
T ss_conf 993699987897266788999877531668999985767510366777659999999998499--7489999875368