HHsearch alignment for GI: 254780725 and conserved domain: cd02035
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.85 E-value=1.1e-20 Score=146.35 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCC-CCCHHH-HHHHHHHHCCC
Q ss_conf 9997469887756899999999996269949999787989860334389987898886318-456124-33765320248
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYP-VGRIDK-AFVSRLPVFYA 241 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~-~~rlD~-~~l~~~l~~~~ 241 (427)
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~-~G~rvLlvs~DPah~l~d~~-----~~~L~~~~~~~~~e~~~~~~~~~v~~~~~ 74 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKG-----LPNLSDAFIVEDPEIAPNLYREEVDATRR 74 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9899789966199999999999996-89949999589876653234-----79865135888766679999875016665
Q ss_pred CCEEEEECCC---CCC-CHHCCCH-HHHHHHHHHH-HHCCCEEEECCCCCCCH---HHHHHHHHCC--CCCCCCCCCHHH
Q ss_conf 9806872487---612-0320799-9999989998-51288899738888898---9999986201--254357877688
Q gi|254780725|r 242 ENLSILTAPA---MLS-RTYDFDE-KMIVPVLDIL-EQIFPLVILDVPHVWNS---WTQEVLTLSD--KVVITTSLDLAG 310 (427)
Q Consensus 242 ~gL~lL~a~~---~~~-~~~~~~~-~~l~~ll~~l-~~~yd~VIiD~p~~~~~---~~~~~L~~AD--~vviV~~p~~~s 310 (427)
T Consensus 75 ~~~~~~~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~ 154 (217)
T cd02035 75 VERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCH
T ss_conf 33311001145677761599789999999999998548998899828985569998678872488876799995776217
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99999999999981987675389995658987
Q gi|254780725|r 311 LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 311 lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
T Consensus 155 ~~et~r~~~~L~~~gi~--v~~vVvN~v~p~~ 184 (217)
T cd02035 155 LYETERAITELALYGIP--VDAVVVNRVLPAE 184 (217)
T ss_pred HHHHHHHHHHHHHCCCC--CCEEEEECCCCCC
T ss_conf 99999999999977998--8989895882787