HHsearch alignment for GI: 254780725 and conserved domain: cd02038
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.93 E-value=1.2e-25 Score=176.92 Aligned_cols=133 Identities=23% Similarity=0.353 Sum_probs=111.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~-~G~~vll~D~D~g~an~------------------------------------ 43 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANL------------------------------------ 43 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCC------------------------------------
T ss_conf 98996499998399999999999997-89969999898999657------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80687248761203207999999989998512888997388888989999986201254357877688999999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLK 322 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~ 322 (427)
T Consensus 44 -------------------------------~~D~viiD~~aG~~~~~~~~~~~ad~~lvV~tpeptSi~DAYalIK~l~ 92 (139)
T cd02038 44 -------------------------------DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLA 92 (139)
T ss_pred -------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf -------------------------------9999999489998778999999589579995897067999999999999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH----HCC--CEEEEEC
Q ss_conf 81987675389995658987520059999998----489--5379906
Q gi|254780725|r 323 KLRPADKPPYLVLNQVKTPKKPEISISDFCAP----LGI--TPSAIIP 364 (427)
Q Consensus 323 ~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~----lg~--~~~~~IP 364 (427)
T Consensus 93 ~~~-~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 93 KQL-RVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 963-99975999956899999999999999999998099831071485