HHsearch alignment for GI: 254780725 and conserved domain: cd03248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.09 E-value=0.069 Score=30.77 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
T Consensus 38 ~~Ge~vaIvG-~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVG-PSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCC
T ss_conf 2999999999-999849999999964546