HHsearch alignment for GI: 254780725 and conserved domain: cd04136
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.36 E-value=1 Score=23.54 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=66.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--98999998620125435787-768899999999999981-9876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKL-RPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~-~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 48 ~~~l~iwDtaG~e~~~~~~~~y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~ 127 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE 127 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHH
T ss_conf 99998645765445556789883468769997048988999999999999998618888867876235472640789999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
T Consensus 128 ----------------~~~--~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i 162 (163)
T cd04136 128 ----------------EGQ--ALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ----------------HHH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----------------999--99998499899974487805899999999963