HHsearch alignment for GI: 254780725 and conserved domain: cd04137

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=92.17  E-value=0.84  Score=24.09  Aligned_cols=119  Identities=13%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             288899738888--898999998620125435787-76889999999999998-19876753899956589875200599
Q gi|254780725|r  274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKK-LRPADKPPYLVLNQVKTPKKPEISIS  349 (427)
Q Consensus       274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~-~~~~~~~~~iVlNr~~~~~~~~i~~~  349 (427)
T Consensus        48 ~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~  127 (180)
T cd04137          48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE  127 (180)
T ss_pred             EEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHH
T ss_conf             99999998998701006679998635578999743887889999999999999758888867977653462440788999


Q ss_pred             HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf             99998489537990687999999884796189888999--89999999999985221223211
Q gi|254780725|r  350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSKPQ  410 (427)
Q Consensus       350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~~k  410 (427)
T Consensus       128 e~----------------~--~~a~~~~~~f~EtSAk~g~nV~e~F~~l~~~i~k~~~~~~~~  172 (180)
T cd04137         128 EG----------------K--ELAESWGAAFLESSARENENVEEAFELLIEEIEKVENPLDPG  172 (180)
T ss_pred             HH----------------H--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             99----------------9--999983998999776889198999999999998863899999