HHsearch alignment for GI: 254780725 and conserved domain: cd04141

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=90.18  E-value=1.3  Score=22.88  Aligned_cols=114  Identities=15%  Similarity=0.215  Sum_probs=72.6

Q ss_pred             CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             288899738888--898999998620125435787-7688999999999999819-876753899956589875200599
Q gi|254780725|r  274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISIS  349 (427)
Q Consensus       274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~  349 (427)
T Consensus        49 ~~~l~iwDtaGqe~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~  128 (172)
T cd04141          49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE  128 (172)
T ss_pred             EEEEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHH
T ss_conf             99999997888513574515564278656887316888899999999999999728899868998504566761888999


Q ss_pred             HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf             99998489537990687999999884796189888999--899999999999852212
Q gi|254780725|r  350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVT  405 (427)
Q Consensus       350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~  405 (427)
T Consensus       129 e------------------~~~~a~~~~~~f~EtSAk~~~nV~e~F~~l~~~i~~k~~  168 (172)
T cd04141         129 E------------------GRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES  168 (172)
T ss_pred             H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             9------------------999999859979997478882889999999999986357