HHsearch alignment for GI: 254780725 and conserved domain: cd04147
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=93.54 E-value=0.54 Score=25.27 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCC-CCCEEEEECCC-CCCCCHHHH
Q ss_conf 2888997388888--98999998620125435787-7688999999999999819876-75389995658-987520059
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPAD-KPPYLVLNQVK-TPKKPEISI 348 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~-~~~~iVlNr~~-~~~~~~i~~ 348 (427)
T Consensus 46 ~v~l~i~DtaG~e~~~~l~~~~~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~ 125 (198)
T cd04147 46 SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA 125 (198)
T ss_pred EEEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCH
T ss_conf 99999997877513014555541588668999616977999999999999999628889828999878765010478489
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHH-HCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 99999848953799068799999988-4796189888999--899999999999852
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSA-NSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~-~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
T Consensus 126 ~e~~------------------~~a~~~~~~~f~EtSAktg~nV~e~F~~l~r~i~~ 164 (198)
T cd04147 126 KDAL------------------STVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred HHHH------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9999------------------99985599789987799994989999999999773