HHsearch alignment for GI: 254780725 and conserved domain: cd04148
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.24 E-value=0.4 Score=26.08 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCEEEECCCCCCCHHHHHHHH-HCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 888997388888989999986-2012543578-776889999999999998198-7675389995658987520059999
Q gi|254780725|r 275 FPLVILDVPHVWNSWTQEVLT-LSDKVVITTS-LDLAGLRNSKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISISDF 351 (427)
Q Consensus 275 yd~VIiD~p~~~~~~~~~~L~-~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~~~~ 351 (427)
T Consensus 50 ~~l~i~Dt~g~e~~~~~~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eE- 128 (221)
T cd04148 50 STLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE- 128 (221)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHH-
T ss_conf 8999998987312666656530686899999646677888899999999986489995199985356668638999999-
Q ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHHHHC
Q ss_conf 99848953799068799999988479618988899--9899999999999852
Q gi|254780725|r 352 CAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPK--SAIANLLVDFSRVLMG 402 (427)
Q Consensus 352 ~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~--s~~a~~~~~La~~i~g 402 (427)
T Consensus 129 ---------------g~--~~A~~~~~~F~EtSAk~~~NV~elF~~lvrqIrl 164 (221)
T cd04148 129 ---------------GR--ACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred ---------------HH--HHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---------------99--9999859989994579994989999999999985