HHsearch alignment for GI: 254780725 and conserved domain: cd04149

>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=90.04  E-value=1.3  Score=22.85  Aligned_cols=83  Identities=11%  Similarity=0.128  Sum_probs=56.3

Q ss_pred             CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             288899738888--8989999986201254357877-68899999999999-9819876753899956589875200599
Q gi|254780725|r  274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS  349 (427)
Q Consensus       274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~  349 (427)
T Consensus        52 ~~~l~iwD~~Gqe~~r~l~~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~--~~~~~  129 (168)
T cd04149          52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPH  129 (168)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCC--CCCHH
T ss_conf             8899999899997466065764378866899983776789999999999997145227986999997566777--88999


Q ss_pred             HHHHHHCCC
Q ss_conf             999984895
Q gi|254780725|r  350 DFCAPLGIT  358 (427)
Q Consensus       350 ~~~~~lg~~  358 (427)
T Consensus       130 ei~~~l~l~  138 (168)
T cd04149         130 EIQEKLGLT  138 (168)
T ss_pred             HHHHHHCHH
T ss_conf             999997876