HHsearch alignment for GI: 254780725 and conserved domain: cd04149
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=90.04 E-value=1.3 Score=22.85 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=56.3
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--8989999986201254357877-68899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 52 ~~~l~iwD~~Gqe~~r~l~~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~--~~~~~ 129 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPH 129 (168)
T ss_pred CEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCC--CCCHH
T ss_conf 8899999899997466065764378866899983776789999999999997145227986999997566777--88999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
T Consensus 130 ei~~~l~l~ 138 (168)
T cd04149 130 EIQEKLGLT 138 (168)
T ss_pred HHHHHHCHH
T ss_conf 999997876