HHsearch alignment for GI: 254780725 and conserved domain: cd04150
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=91.04 E-value=0.85 Score=24.06 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=57.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHH-HHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--98999998620125435787-7688999999999-999819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLID-VLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~-~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 43 ~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~--~~~~ 120 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAA 120 (159)
T ss_pred CEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC--CCHH
T ss_conf 89999997899721465678647687389999977777899999999999962353369829999975667789--8999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
T Consensus 121 ei~~~l~l~ 129 (159)
T cd04150 121 EVTDKLGLH 129 (159)
T ss_pred HHHHHHCHH
T ss_conf 999996866