HHsearch alignment for GI: 254780725 and conserved domain: cd04152

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.17  E-value=0.62  Score=24.91  Aligned_cols=118  Identities=14%  Similarity=0.214  Sum_probs=75.3

Q ss_pred             CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf             288899738888--89899999862012543578-77688999999999999819-876753899956589875200599
Q gi|254780725|r  274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISIS  349 (427)
Q Consensus       274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~  349 (427)
T Consensus        51 ~v~l~iwDtaGqe~~r~l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~  128 (183)
T cd04152          51 GITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVS  128 (183)
T ss_pred             EEEEEEEECCCCCCCCEEHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHH
T ss_conf             6799999789873451008767467867899996776889999999999997321237962999986677766--87889


Q ss_pred             HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHCCCC
Q ss_conf             999984895379906879999998847961898889--99899999999999852212
Q gi|254780725|r  350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVLMGRVT  405 (427)
Q Consensus       350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i~gr~~  405 (427)
T Consensus       129 ei~~~l~l~~------------~~~~~~~~i~~tSA~tG~gI~e~f~~L~~~i~~r~~  174 (183)
T cd04152         129 EVEKLLALHE------------LSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK  174 (183)
T ss_pred             HHHHHHHHHH------------HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             9999971999------------866699899972799796989999999999999998