HHsearch alignment for GI: 254780725 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.05 E-value=0.94 Score=23.79 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHH-HHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--989999986201254357877-6889999999999-99819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDV-LKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~-l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 58 ~~~~~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~--~~~~~ 135 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPA 135 (174)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC--CCCHH
T ss_conf 8899999899986566226777057753799997678889999999999997261016982899995555655--78999
Q ss_pred HHHHHHCC
Q ss_conf 99998489
Q gi|254780725|r 350 DFCAPLGI 357 (427)
Q Consensus 350 ~~~~~lg~ 357 (427)
T Consensus 136 ei~~~l~l 143 (174)
T cd04153 136 EISESLGL 143 (174)
T ss_pred HHHHHHHH
T ss_conf 99999747