HHsearch alignment for GI: 254780725 and conserved domain: cd04155
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.71 E-value=0.29 Score=26.91 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHH-HHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--8989999986201254357877-688999999999-999819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLID-VLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~-~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 57 ~~~~~lwD~~G~~~~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~--a~~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT--AAPAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCHH
T ss_conf 9999998558751012689976555637999996675688999999999997413006983899997666777--89999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
T Consensus 135 eI~~~l~l~ 143 (173)
T cd04155 135 EIAEALNLH 143 (173)
T ss_pred HHHHHHCHH
T ss_conf 999985876