HHsearch alignment for GI: 254780725 and conserved domain: cd04167
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.39 E-value=0.056 Score=31.35 Aligned_cols=64 Identities=25% Similarity=0.247 Sum_probs=50.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 2888997388888--989999986201254357877688999999999999819876753899956589
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
T Consensus 70 ~~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l---~~ilviNKiDR 135 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL---PIVLVINKIDR 135 (213)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCC
T ss_conf 0578778898724179999988863776799998788875779999999998699---98999988234