Query gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 427
No_of_seqs 291 out of 3794
Neff 7.5
Searched_HMMs 39220
Date Sun May 29 20:05:25 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780725.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG4963 CpaE Flp pilus assembl 100.0 0 0 383.4 24.2 359 22-422 5-365 (366)
2 CHL00175 minD septum-site dete 100.0 0 0 323.3 27.2 261 157-425 9-279 (279)
3 TIGR01968 minD_bact septum sit 100.0 0 0 317.6 15.6 254 161-421 1-272 (272)
4 PRK10818 cell division inhibit 100.0 0 0 304.0 25.0 256 160-422 1-269 (270)
5 TIGR01969 minD_arch cell divis 100.0 0 0 301.4 21.1 231 162-402 1-233 (258)
6 TIGR03371 cellulose_yhjQ cellu 100.0 3.1E-40 8.4E-45 266.6 25.5 234 162-403 2-244 (246)
7 COG0455 flhG Antiactivator of 100.0 3.6E-39 9.1E-44 260.0 27.5 258 161-424 2-262 (262)
8 pfam00142 Fer4_NifH 4Fe-4S iro 100.0 1.2E-37 3E-42 250.7 25.1 256 162-422 1-266 (269)
9 COG2894 MinD Septum formation 100.0 1.1E-38 2.8E-43 257.0 18.2 257 160-423 1-272 (272)
10 cd02040 NifH NifH gene encodes 100.0 1.3E-37 3.3E-42 250.4 23.5 257 162-423 2-268 (270)
11 cd02036 MinD Bacterial cell di 100.0 8.5E-36 2.2E-40 239.3 19.7 176 163-393 1-179 (179)
12 PRK13233 nifH nitrogenase redu 100.0 4.3E-35 1.1E-39 234.9 22.6 259 161-423 2-270 (275)
13 pfam06564 YhjQ YhjQ protein. T 100.0 1.8E-35 4.7E-40 237.2 20.3 225 162-402 2-237 (244)
14 PRK13232 nifH nitrogenase redu 100.0 5.8E-35 1.5E-39 234.2 22.1 257 162-423 2-267 (273)
15 PRK13235 nifH nitrogenase redu 100.0 1.6E-34 4.2E-39 231.4 23.1 256 162-423 2-269 (274)
16 PRK13230 nitrogenase reductase 100.0 2.5E-33 6.5E-38 224.0 22.6 255 162-422 2-279 (292)
17 PRK11670 putative ATPase; Prov 100.0 1.2E-32 2.9E-37 220.0 22.2 232 159-405 105-354 (369)
18 cd02032 Bchl_like This family 100.0 1.7E-32 4.4E-37 218.9 22.8 251 163-422 2-265 (267)
19 PHA02518 ParA-like protein; Pr 100.0 9.5E-33 2.4E-37 220.5 20.0 206 162-404 1-209 (211)
20 PRK13185 chlL protochlorophyll 100.0 2.5E-31 6.5E-36 211.7 24.4 253 161-422 2-266 (269)
21 PRK13231 nitrogenase reductase 100.0 1.4E-31 3.6E-36 213.3 22.9 250 162-423 3-261 (264)
22 TIGR03453 partition_RepA plasm 100.0 4.1E-31 1.1E-35 210.4 22.0 236 158-398 101-368 (387)
23 PRK13869 plasmid-partitioning 100.0 4.9E-31 1.3E-35 210.0 19.7 234 160-398 120-385 (405)
24 CHL00072 chlL photochlorophyll 100.0 2.9E-30 7.4E-35 205.2 22.0 251 163-422 2-265 (271)
25 PRK10037 cell division protein 100.0 2.3E-30 5.8E-35 205.9 21.4 224 162-401 2-236 (250)
26 PRK13234 nifH nitrogenase redu 100.0 4.5E-30 1.2E-34 204.1 22.8 257 161-422 4-271 (293)
27 pfam01656 CbiA CobQ/CobB/MinD/ 100.0 5.5E-31 1.4E-35 209.7 16.8 202 164-369 1-210 (212)
28 PRK13236 nitrogenase reductase 100.0 5.5E-30 1.4E-34 203.5 20.9 259 160-423 5-273 (295)
29 COG1192 Soj ATPases involved i 100.0 1.6E-29 4E-34 200.7 21.0 239 161-404 2-254 (259)
30 PRK13705 plasmid-partitioning 100.0 3.6E-29 9.1E-34 198.5 20.6 222 157-385 102-353 (388)
31 PHA02519 plasmid partition pro 100.0 1.4E-28 3.5E-33 195.0 22.5 223 157-385 102-353 (387)
32 cd02117 NifH_like This family 100.0 1.8E-29 4.5E-34 200.4 15.4 202 162-366 1-212 (212)
33 TIGR01287 nifH nitrogenase iro 100.0 1.4E-28 3.6E-33 194.9 18.1 258 162-423 1-270 (278)
34 cd03111 CpaE_like This protein 100.0 5.1E-29 1.3E-33 197.6 12.7 105 163-337 1-106 (106)
35 cd03110 Fer4_NifH_child This p 100.0 9.6E-28 2.4E-32 189.8 16.2 177 163-364 1-179 (179)
36 KOG3022 consensus 100.0 2.9E-26 7.4E-31 180.7 21.5 232 157-403 43-294 (300)
37 COG1348 NifH Nitrogenase subun 99.9 4.1E-26 1E-30 179.7 18.5 259 162-425 2-271 (278)
38 pfam09140 MipZ ATPase MipZ. Mi 99.9 1E-25 2.6E-30 177.3 16.4 209 162-386 1-234 (261)
39 PRK09841 cryptic autophosphory 99.9 4.6E-25 1.2E-29 173.3 17.7 192 142-341 511-706 (726)
40 COG1149 MinD superfamily P-loo 99.9 1.3E-24 3.4E-29 170.4 19.1 230 162-402 2-282 (284)
41 COG3640 CooC CO dehydrogenase 99.9 1.3E-24 3.3E-29 170.5 19.0 228 163-402 2-252 (255)
42 PRK11519 tyrosine kinase; Prov 99.9 2.1E-24 5.4E-29 169.2 19.2 175 158-340 523-700 (720)
43 TIGR03029 EpsG chain length de 99.9 1.5E-24 3.9E-29 170.0 18.0 171 160-337 102-274 (274)
44 cd02038 FleN-like FleN is a me 99.9 1.2E-25 3E-30 176.9 12.2 133 163-364 1-139 (139)
45 COG0489 Mrp ATPases involved i 99.9 1.3E-23 3.3E-28 164.4 18.6 202 158-369 54-261 (265)
46 cd02033 BchX Chlorophyllide re 99.9 6.6E-23 1.7E-27 160.0 20.2 251 159-423 29-294 (329)
47 TIGR03018 pepcterm_TyrKin exop 99.9 5.6E-23 1.4E-27 160.4 18.0 194 134-336 5-207 (207)
48 TIGR01281 DPOR_bchL light-inde 99.9 3.5E-23 9E-28 161.7 15.5 256 162-422 1-272 (275)
49 TIGR01007 eps_fam capsular exo 99.9 5.5E-23 1.4E-27 160.5 13.7 178 160-343 18-198 (207)
50 cd02037 MRP-like MRP (Multiple 99.9 1.2E-22 3.1E-27 158.4 15.2 157 163-367 1-169 (169)
51 pfam07015 VirC1 VirC1 protein. 99.9 3.4E-21 8.7E-26 149.5 21.1 207 162-401 2-219 (231)
52 PRK13849 putative crown gall t 99.9 6.3E-21 1.6E-25 147.8 17.1 185 162-379 2-191 (231)
53 cd00550 ArsA_ATPase Oxyanion-t 99.9 4.5E-21 1.1E-25 148.8 13.7 198 162-365 1-238 (254)
54 cd02035 ArsA ArsA ATPase funct 99.9 1.1E-20 2.8E-25 146.4 12.6 171 164-342 1-184 (217)
55 cd02042 ParA ParA and ParB of 99.9 1.5E-20 3.8E-25 145.5 12.3 101 163-336 1-104 (104)
56 TIGR02016 BchX chlorophyllide 99.8 9.2E-19 2.3E-23 134.5 15.5 229 162-405 1-253 (355)
57 PRK10923 glnG nitrogen regulat 99.7 2.2E-15 5.7E-20 113.7 17.2 177 28-213 3-213 (469)
58 pfam02374 ArsA_ATPase Anion-tr 99.7 4.4E-16 1.1E-20 118.1 13.4 172 164-341 3-248 (304)
59 PRK11361 acetoacetate metaboli 99.7 5.9E-15 1.5E-19 111.1 17.2 180 23-213 1-218 (457)
60 PRK10365 transcriptional regul 99.7 6.4E-15 1.6E-19 110.9 16.7 166 28-202 5-201 (441)
61 TIGR01818 ntrC nitrogen regula 99.7 2.4E-15 6.1E-20 113.5 14.5 156 35-197 5-192 (471)
62 COG2204 AtoC Response regulato 99.6 1.2E-13 3E-18 103.1 16.4 163 30-200 6-201 (464)
63 TIGR01005 eps_transp_fam exopo 99.6 7.9E-14 2E-18 104.2 12.4 177 160-343 559-742 (778)
64 PRK10046 dpiA two-component re 99.5 4.3E-13 1.1E-17 99.7 14.9 119 29-151 5-123 (225)
65 cd02034 CooC The accessory pro 99.5 1.5E-13 3.8E-18 102.5 9.9 111 164-304 2-116 (116)
66 PRK10430 DNA-binding transcrip 99.5 2.3E-12 5.8E-17 95.2 14.5 113 35-149 7-120 (239)
67 PRK10693 response regulator of 99.5 6.4E-12 1.6E-16 92.5 15.2 119 25-150 4-124 (337)
68 cd01983 Fer4_NifH The Fer4_Nif 99.4 1.4E-12 3.5E-17 96.6 10.7 95 163-336 1-99 (99)
69 PRK11083 DNA-binding response 99.4 2.2E-11 5.5E-16 89.2 15.4 117 30-153 5-122 (229)
70 cd00156 REC Signal receiver do 99.4 8.6E-12 2.2E-16 91.7 13.1 108 35-149 3-112 (113)
71 COG4753 Response regulator con 99.4 9.1E-12 2.3E-16 91.5 12.8 103 50-154 22-124 (475)
72 pfam00072 Response_reg Respons 99.4 2E-11 5.2E-16 89.4 13.9 106 35-147 5-111 (111)
73 TIGR00345 arsA arsenite-activa 99.4 1.8E-12 4.7E-17 95.8 8.2 171 166-340 1-268 (330)
74 PRK09836 DNA-binding transcrip 99.4 3.8E-11 9.6E-16 87.7 14.2 115 31-152 3-118 (226)
75 PRK09390 fixJ response regulat 99.4 1.6E-11 4E-16 90.1 12.1 117 28-151 3-120 (202)
76 PRK10610 chemotaxis regulatory 99.4 5.7E-11 1.5E-15 86.6 14.8 120 28-151 5-125 (129)
77 PRK09581 pleD response regulat 99.4 4.8E-11 1.2E-15 87.1 14.0 114 27-149 3-119 (457)
78 PRK10336 DNA-binding transcrip 99.4 3.2E-11 8.2E-16 88.1 13.0 113 33-152 5-118 (219)
79 PRK09468 ompR osmolarity respo 99.3 5.3E-11 1.4E-15 86.8 13.9 116 30-152 7-123 (239)
80 PRK10161 transcriptional regul 99.3 1.1E-10 2.9E-15 84.8 13.5 117 31-153 5-123 (229)
81 PRK11517 transcriptional regul 99.3 1.4E-10 3.5E-15 84.3 13.7 114 31-152 3-117 (223)
82 COG0745 OmpR Response regulato 99.3 2.9E-10 7.5E-15 82.2 14.8 116 32-154 4-120 (229)
83 CHL00148 orf27 Ycf27; Reviewed 99.3 9E-11 2.3E-15 85.4 11.7 115 30-152 8-123 (240)
84 PRK10710 DNA-binding transcrip 99.3 1.1E-10 2.9E-15 84.8 11.8 118 25-152 9-127 (240)
85 PRK10643 DNA-binding transcrip 99.3 2.4E-10 6.2E-15 82.7 13.4 115 31-152 3-118 (222)
86 PRK10816 DNA-binding transcrip 99.3 2.2E-10 5.7E-15 83.0 12.9 112 34-152 6-118 (223)
87 PRK09483 response regulator; P 99.3 3.9E-10 1E-14 81.5 14.0 118 30-151 3-120 (216)
88 TIGR02154 PhoB phosphate regul 99.2 1.1E-10 2.8E-15 84.9 10.9 149 34-206 8-158 (226)
89 PRK09935 transcriptional regul 99.2 4.5E-10 1.1E-14 81.1 13.8 119 29-151 4-122 (210)
90 PRK13435 response regulator; P 99.2 6.8E-10 1.7E-14 80.0 13.1 113 31-154 4-119 (141)
91 PRK10651 transcriptional regul 99.2 4.5E-10 1.1E-14 81.1 12.0 119 29-151 7-125 (216)
92 PRK10701 DNA-binding transcrip 99.2 2.7E-10 6.9E-15 82.4 10.8 114 31-152 4-118 (240)
93 PRK10955 DNA-binding transcrip 99.2 3.6E-10 9.3E-15 81.7 11.3 110 34-152 7-117 (232)
94 PRK10529 DNA-binding transcrip 99.2 4E-10 1E-14 81.4 11.3 114 31-152 4-118 (225)
95 COG4565 CitB Response regulato 99.2 1.1E-09 2.9E-14 78.6 13.1 113 35-150 6-118 (224)
96 COG0003 ArsA Predicted ATPase 99.2 9.4E-11 2.4E-15 85.3 7.5 51 163-215 3-53 (322)
97 PRK11173 two-component respons 99.2 1.1E-09 2.9E-14 78.6 12.8 116 27-152 4-120 (237)
98 PRK10766 DNA-binding transcrip 99.2 5.2E-10 1.3E-14 80.7 10.8 115 30-152 4-119 (224)
99 PRK10403 transcriptional regul 99.2 1.5E-09 3.9E-14 77.9 13.2 120 29-152 7-126 (215)
100 PRK13557 histidine kinase; Pro 99.2 2.7E-09 6.8E-14 76.3 14.1 11 331-341 459-469 (538)
101 PRK00742 chemotaxis-specific m 99.1 1.1E-08 2.9E-13 72.5 17.0 163 28-200 2-192 (345)
102 PRK09958 DNA-binding transcrip 99.1 2.8E-09 7.2E-14 76.2 13.6 111 36-151 8-118 (204)
103 PRK13856 two-component respons 99.1 3.6E-09 9.1E-14 75.6 14.0 112 32-151 5-118 (241)
104 PRK10840 transcriptional regul 99.1 6.9E-09 1.7E-13 73.8 14.8 120 28-151 3-125 (216)
105 COG4566 TtrR Response regulato 99.1 1.6E-09 4.1E-14 77.7 11.5 116 31-152 7-122 (202)
106 PRK01077 cobyrinic acid a,c-di 99.1 8E-09 2E-13 73.4 14.9 178 162-377 4-192 (451)
107 TIGR01387 cztR_silR_copR heavy 99.1 9.6E-11 2.5E-15 85.2 5.0 142 35-191 5-165 (219)
108 TIGR02915 PEP_resp_reg putativ 99.1 6.2E-10 1.6E-14 80.2 8.9 139 59-200 24-202 (451)
109 PRK05703 flhF flagellar biosyn 99.1 2.1E-08 5.3E-13 70.9 16.0 202 118-361 155-377 (412)
110 PRK12555 chemotaxis-specific m 99.1 1.9E-08 4.9E-13 71.1 15.4 139 30-175 3-168 (340)
111 COG2197 CitB Response regulato 99.1 2.1E-08 5.4E-13 70.8 15.1 115 34-152 6-120 (211)
112 COG4567 Response regulator con 99.0 9E-09 2.3E-13 73.1 12.7 114 30-150 11-125 (182)
113 PRK11107 hybrid sensory histid 99.0 3.5E-08 9E-13 69.5 14.8 111 29-148 537-648 (920)
114 PRK11466 hybrid sensory histid 99.0 1.7E-08 4.3E-13 71.4 13.1 118 27-150 680-798 (912)
115 PRK10360 DNA-binding transcrip 99.0 2.5E-08 6.3E-13 70.4 13.8 108 37-151 10-117 (196)
116 PRK11091 aerobic respiration c 99.0 2.8E-08 7.2E-13 70.1 14.1 129 18-153 515-646 (779)
117 PRK10841 hybrid sensory kinase 99.0 3.8E-08 9.7E-13 69.3 14.4 21 300-320 826-846 (947)
118 KOG2825 consensus 98.9 8.2E-09 2.1E-13 73.4 9.6 173 161-342 18-267 (323)
119 PRK09959 hybrid sensory histid 98.9 9.2E-08 2.4E-12 66.9 14.2 115 28-149 958-1073(1197)
120 TIGR02875 spore_0_A sporulatio 98.9 9.8E-08 2.5E-12 66.7 13.2 121 29-152 3-124 (270)
121 COG1797 CobB Cobyrinic acid a, 98.9 1.5E-07 3.7E-12 65.7 13.8 200 163-401 2-212 (451)
122 PRK10100 DNA-binding transcrip 98.8 9.3E-08 2.4E-12 66.9 11.9 112 35-152 16-127 (216)
123 PRK12374 putative dithiobiotin 98.8 6.7E-07 1.7E-11 61.6 15.4 192 161-369 2-206 (231)
124 PRK00090 bioD dithiobiotin syn 98.8 1.2E-07 3.1E-12 66.2 10.7 187 163-369 1-204 (223)
125 COG3437 Response regulator con 98.8 2.3E-07 5.8E-12 64.5 11.5 115 28-148 14-131 (360)
126 PRK13886 conjugal transfer pro 98.7 2.9E-07 7.3E-12 63.9 11.6 143 161-339 2-156 (241)
127 PRK13896 cobyrinic acid a,c-di 98.7 1.3E-06 3.2E-11 59.9 13.4 179 162-381 2-190 (432)
128 TIGR00313 cobQ cobyric acid sy 98.7 3.3E-08 8.5E-13 69.6 5.0 193 164-369 1-227 (502)
129 PRK10416 cell division protein 98.7 4.7E-06 1.2E-10 56.4 15.9 179 161-376 295-496 (499)
130 COG3706 PleD Response regulato 98.6 1.9E-06 4.8E-11 58.8 13.3 119 28-152 132-252 (435)
131 PRK11475 DNA-binding transcrip 98.6 7.1E-07 1.8E-11 61.5 10.1 93 57-151 21-114 (205)
132 PRK13837 two-component VirA-li 98.5 4.8E-06 1.2E-10 56.3 13.3 59 329-387 744-803 (831)
133 COG0784 CheY FOG: CheY-like re 98.5 1.1E-05 2.9E-10 54.0 14.9 117 29-150 6-124 (130)
134 COG3947 Response regulator con 98.5 4.6E-06 1.2E-10 56.4 12.5 149 37-194 9-167 (361)
135 COG1703 ArgK Putative periplas 98.5 1.1E-05 2.8E-10 54.1 13.3 186 160-378 50-240 (323)
136 PRK11697 putative two-componen 98.4 7.9E-06 2E-10 55.0 12.3 112 33-151 5-117 (239)
137 TIGR00959 ffh signal recogniti 98.4 5.3E-05 1.3E-09 49.9 16.4 186 139-361 78-279 (439)
138 PRK06995 flhF flagellar biosyn 98.4 1.7E-05 4.4E-10 52.9 13.7 242 118-404 119-394 (404)
139 PRK00784 cobyric acid synthase 98.4 7.4E-06 1.9E-10 55.2 11.4 198 160-367 2-229 (492)
140 TIGR03499 FlhF flagellar biosy 98.4 1.5E-06 3.9E-11 59.4 7.8 131 118-284 137-282 (282)
141 COG0541 Ffh Signal recognition 98.4 6E-05 1.5E-09 49.6 16.0 173 161-371 100-290 (451)
142 PRK10867 signal recognition pa 98.4 6.8E-05 1.7E-09 49.2 16.1 173 162-371 101-291 (453)
143 PRK06731 flhF flagellar biosyn 98.4 2.7E-05 6.9E-10 51.7 13.5 169 159-369 73-256 (270)
144 pfam00448 SRP54 SRP54-type pro 98.4 6.6E-05 1.7E-09 49.3 15.2 144 162-342 2-154 (196)
145 PRK09435 arginine/ornithine tr 98.3 4.3E-05 1.1E-09 50.5 13.6 167 159-357 47-218 (325)
146 pfam03308 ArgK ArgK protein. T 98.3 1.1E-05 2.7E-10 54.2 10.4 165 160-357 28-195 (267)
147 PRK13768 GTPase; Provisional 98.3 1.9E-05 4.9E-10 52.6 11.4 181 163-376 4-199 (253)
148 PRK12727 flagellar biosynthesi 98.3 3.5E-05 8.8E-10 51.1 12.6 184 117-341 292-495 (557)
149 PRK12726 flagellar biosynthesi 98.2 3.4E-05 8.6E-10 51.1 11.8 163 158-362 203-375 (407)
150 PRK00771 signal recognition pa 98.2 0.00013 3.3E-09 47.6 14.6 171 162-371 98-285 (433)
151 COG1341 Predicted GTPase or GT 98.2 2.2E-05 5.5E-10 52.3 10.5 153 134-308 47-212 (398)
152 cd03115 SRP The signal recogni 98.2 0.00017 4.3E-09 46.8 14.8 160 163-360 2-170 (173)
153 COG0132 BioD Dethiobiotin synt 98.2 8.8E-05 2.3E-09 48.6 13.3 188 162-369 3-207 (223)
154 TIGR00064 ftsY signal recognit 98.2 0.00023 5.7E-09 46.1 14.7 220 112-374 37-283 (284)
155 KOG0519 consensus 98.1 4.6E-05 1.2E-09 50.3 10.7 57 329-385 710-770 (786)
156 PRK05632 phosphate acetyltrans 98.1 0.00039 1E-08 44.6 14.9 36 77-114 98-136 (702)
157 COG3707 AmiR Response regulato 98.1 4.7E-05 1.2E-09 50.3 9.7 80 66-148 40-119 (194)
158 KOG0781 consensus 98.1 4.2E-05 1.1E-09 50.5 9.3 189 119-340 343-542 (587)
159 PRK12724 flagellar biosynthesi 98.1 0.00055 1.4E-08 43.7 14.9 208 118-368 158-403 (432)
160 PRK12723 flagellar biosynthesi 98.1 0.00019 4.9E-09 46.5 12.4 162 159-362 172-345 (388)
161 COG2403 Predicted GTPase [Gene 98.0 0.0011 2.7E-08 41.9 16.2 198 93-327 71-299 (449)
162 PRK13558 bacterio-opsin activa 98.0 3.8E-05 9.7E-10 50.8 8.6 97 50-150 35-131 (674)
163 PRK11889 flhF flagellar biosyn 98.0 8.8E-05 2.3E-09 48.6 9.3 169 159-369 239-422 (436)
164 COG0552 FtsY Signal recognitio 98.0 0.00011 2.7E-09 48.1 9.5 175 161-374 139-338 (340)
165 TIGR00379 cobB cobyrinic acid 97.9 0.0008 2E-08 42.7 12.9 198 164-401 2-218 (464)
166 PRK05537 bifunctional sulfate 97.8 0.00045 1.1E-08 44.2 11.0 145 120-283 357-501 (568)
167 pfam10609 ParA ParA/MinD ATPas 97.8 9.3E-05 2.4E-09 48.4 7.1 63 275-339 1-65 (81)
168 cd01886 EF-G Elongation factor 97.7 0.0018 4.6E-08 40.5 12.7 149 164-364 2-154 (270)
169 cd04169 RF3 RF3 subfamily. Pe 97.7 0.0014 3.5E-08 41.2 12.1 156 162-365 3-162 (267)
170 pfam03029 ATP_bind_1 Conserved 97.7 0.00016 4.1E-09 47.0 7.0 151 170-341 4-167 (234)
171 TIGR00750 lao LAO/AO transport 97.7 0.0041 1E-07 38.3 14.8 158 160-345 37-199 (333)
172 cd03109 DTBS Dethiobiotin synt 97.7 0.00056 1.4E-08 43.6 9.4 126 164-364 1-134 (134)
173 TIGR02956 TMAO_torS TMAO reduc 97.6 0.00078 2E-08 42.7 9.9 113 30-150 763-886 (1052)
174 cd04170 EF-G_bact Elongation f 97.6 0.0019 4.9E-08 40.3 11.8 89 273-364 62-154 (268)
175 PRK09361 radB DNA repair and r 97.6 0.0019 4.9E-08 40.3 11.7 40 159-200 21-60 (224)
176 cd04168 TetM_like Tet(M)-like 97.6 0.001 2.6E-08 42.0 10.2 85 273-360 62-149 (237)
177 COG2201 CheB Chemotaxis respon 97.6 0.0062 1.6E-07 37.2 16.3 161 30-198 3-191 (350)
178 KOG0780 consensus 97.6 0.0023 5.8E-08 39.9 11.3 174 161-373 101-293 (483)
179 PRK00741 prfC peptide chain re 97.5 0.0035 8.9E-08 38.7 11.7 73 34-106 83-162 (526)
180 cd01394 radB RadB. The archaea 97.5 0.0034 8.8E-08 38.8 11.2 40 159-200 17-56 (218)
181 COG0468 RecA RecA/RadA recombi 97.4 0.0046 1.2E-07 38.0 11.6 142 156-340 55-197 (279)
182 KOG1532 consensus 97.4 0.0025 6.3E-08 39.7 10.0 181 157-356 15-214 (366)
183 COG1419 FlhF Flagellar GTP-bin 97.4 0.00047 1.2E-08 44.1 5.7 186 115-341 151-351 (407)
184 pfam03796 DnaB_C DnaB-like hel 97.4 0.0072 1.8E-07 36.8 11.8 47 159-206 17-63 (186)
185 cd03114 ArgK-like The function 97.3 0.0063 1.6E-07 37.2 10.8 146 163-339 1-148 (148)
186 pfam00009 GTP_EFTU Elongation 97.3 0.0024 6E-08 39.8 8.5 67 273-342 65-133 (185)
187 TIGR02237 recomb_radB DNA repa 97.3 0.0015 3.9E-08 41.0 7.5 146 159-340 10-160 (223)
188 TIGR03600 phage_DnaB phage rep 97.3 0.0009 2.3E-08 42.4 6.3 111 163-282 195-313 (421)
189 cd00984 DnaB_C DnaB helicase C 97.1 0.005 1.3E-07 37.8 8.9 47 159-206 11-57 (242)
190 cd01122 GP4d_helicase GP4d_hel 97.1 0.0032 8.1E-08 39.0 7.9 46 159-205 28-73 (271)
191 PRK08082 consensus 97.1 0.0043 1.1E-07 38.2 8.4 46 160-206 202-247 (453)
192 cd01125 repA Hexameric Replica 97.1 0.0031 7.9E-08 39.0 7.7 111 163-282 2-119 (239)
193 cd01891 TypA_BipA TypA (tyrosi 97.1 0.0038 9.6E-08 38.5 8.1 77 274-353 64-143 (194)
194 PRK05595 replicative DNA helic 97.1 0.0015 3.9E-08 41.0 6.0 46 160-206 200-245 (444)
195 PRK06749 replicative DNA helic 97.1 0.0033 8.3E-08 38.9 7.5 40 163-203 187-226 (428)
196 cd01393 recA_like RecA is a b 97.1 0.011 2.8E-07 35.6 10.2 47 157-204 15-66 (226)
197 PRK05636 replicative DNA helic 97.0 0.0034 8.7E-08 38.8 7.3 115 160-282 266-385 (507)
198 PRK07263 consensus 97.0 0.0025 6.3E-08 39.6 6.5 46 160-206 202-247 (453)
199 PRK05748 replicative DNA helic 97.0 0.0024 6.2E-08 39.7 6.3 46 160-206 202-247 (448)
200 PRK09191 two-component respons 97.0 0.013 3.3E-07 35.2 9.8 85 60-149 166-251 (261)
201 PRK13351 elongation factor G; 96.9 0.033 8.3E-07 32.8 12.3 17 260-276 451-467 (687)
202 PRK07004 replicative DNA helic 96.9 0.004 1E-07 38.4 6.7 44 163-206 214-257 (460)
203 cd00881 GTP_translation_factor 96.9 0.0052 1.3E-07 37.7 7.2 81 274-357 61-145 (189)
204 PRK06696 uridine kinase; Valid 96.8 0.0048 1.2E-07 37.9 6.8 61 138-203 6-66 (227)
205 pfam00154 RecA recA bacterial 96.8 0.036 9.2E-07 32.5 13.1 45 157-203 48-92 (322)
206 PRK08760 replicative DNA helic 96.8 0.0061 1.6E-07 37.2 7.2 46 160-206 228-273 (476)
207 KOG1533 consensus 96.8 0.0019 5E-08 40.3 4.5 103 165-287 6-109 (290)
208 TIGR00455 apsK adenylylsulfate 96.8 0.019 4.8E-07 34.2 9.5 114 157-283 15-128 (187)
209 PRK08840 replicative DNA helic 96.8 0.0044 1.1E-07 38.1 6.1 46 160-206 216-261 (464)
210 PRK07471 DNA polymerase III su 96.8 0.041 1E-06 32.2 11.4 147 139-311 22-182 (363)
211 cd00983 recA RecA is a bacter 96.8 0.042 1.1E-06 32.1 12.7 45 157-203 51-95 (325)
212 KOG0078 consensus 96.8 0.042 1.1E-06 32.1 11.4 111 278-406 64-179 (207)
213 PRK06904 replicative DNA helic 96.7 0.006 1.5E-07 37.3 6.5 114 160-282 220-342 (472)
214 cd01885 EF2 EF2 (for archaea a 96.7 0.017 4.4E-07 34.5 8.7 66 273-341 71-138 (222)
215 TIGR01425 SRP54_euk signal rec 96.6 0.014 3.5E-07 35.1 7.8 172 161-371 121-311 (453)
216 TIGR00347 bioD dethiobiotin sy 96.6 0.0073 1.9E-07 36.8 6.3 161 166-336 2-187 (187)
217 PRK00889 adenylylsulfate kinas 96.6 0.036 9.1E-07 32.5 9.8 82 160-251 3-84 (175)
218 PRK08506 replicative DNA helic 96.6 0.0083 2.1E-07 36.4 6.4 42 160-203 192-233 (473)
219 PRK08694 consensus 96.6 0.0059 1.5E-07 37.3 5.6 44 160-204 217-260 (468)
220 PRK08006 replicative DNA helic 96.6 0.0075 1.9E-07 36.7 6.1 46 160-206 223-268 (471)
221 PRK06321 replicative DNA helic 96.6 0.01 2.6E-07 35.9 6.8 41 163-203 227-267 (472)
222 PRK09165 replicative DNA helic 96.5 0.0099 2.5E-07 35.9 6.6 40 163-202 206-259 (484)
223 pfam01583 APS_kinase Adenylyls 96.5 0.038 9.6E-07 32.4 9.4 58 161-224 2-59 (157)
224 PRK09354 recA recombinase A; P 96.5 0.063 1.6E-06 31.0 12.5 45 157-203 56-100 (350)
225 cd03288 ABCC_SUR2 The SUR doma 96.5 0.022 5.5E-07 33.9 8.0 41 159-201 45-85 (257)
226 PRK05541 adenylylsulfate kinas 96.4 0.041 1.1E-06 32.1 9.2 108 158-283 4-111 (176)
227 cd01890 LepA LepA subfamily. 96.4 0.014 3.5E-07 35.1 6.6 84 274-360 66-152 (179)
228 cd04167 Snu114p Snu114p subfam 96.4 0.056 1.4E-06 31.4 9.7 64 274-340 70-135 (213)
229 TIGR00176 mobB molybdopterin-g 96.4 0.024 6.1E-07 33.6 7.7 102 163-281 1-103 (165)
230 PRK10789 putative multidrug tr 96.3 0.069 1.8E-06 30.8 9.9 150 159-314 339-516 (569)
231 cd01123 Rad51_DMC1_radA Rad51_ 96.3 0.081 2.1E-06 30.4 11.7 46 158-204 16-66 (235)
232 COG1763 MobB Molybdopterin-gua 96.3 0.037 9.3E-07 32.5 8.4 98 161-281 2-99 (161)
233 COG3706 PleD Response regulato 96.3 0.016 4.2E-07 34.6 6.4 86 62-151 18-103 (435)
234 PRK11176 lipid transporter ATP 96.2 0.038 9.7E-07 32.3 8.0 41 159-201 366-406 (581)
235 TIGR02640 gas_vesic_GvpN gas v 96.2 0.0081 2.1E-07 36.5 4.5 45 159-208 19-63 (265)
236 PRK09270 frcK putative fructos 96.2 0.017 4.2E-07 34.6 6.1 71 128-201 3-74 (230)
237 PRK09581 pleD response regulat 96.2 0.059 1.5E-06 31.2 8.9 85 63-148 185-270 (457)
238 cd04112 Rab26 Rab26 subfamily. 96.2 0.097 2.5E-06 29.9 10.4 116 274-407 49-169 (191)
239 COG0529 CysC Adenylylsulfate k 96.2 0.081 2.1E-06 30.3 9.5 113 157-284 19-131 (197)
240 COG1492 CobQ Cobyric acid synt 96.1 0.03 7.5E-07 33.0 7.1 194 162-370 2-231 (486)
241 cd03289 ABCC_CFTR2 The CFTR su 96.1 0.028 7.1E-07 33.2 6.9 41 158-201 27-67 (275)
242 COG3279 LytT Response regulato 96.0 0.05 1.3E-06 31.6 8.0 107 39-151 12-118 (244)
243 pfam00071 Ras Ras family. Incl 96.0 0.12 3E-06 29.4 10.7 110 274-401 47-161 (162)
244 COG0305 DnaB Replicative DNA h 96.0 0.047 1.2E-06 31.8 7.6 40 163-202 197-236 (435)
245 cd04121 Rab40 Rab40 subfamily. 96.0 0.12 3.1E-06 29.3 11.2 112 274-404 54-170 (189)
246 PRK05506 bifunctional sulfate 96.0 0.1 2.6E-06 29.8 9.2 112 157-283 439-550 (613)
247 TIGR01618 phage_P_loop phage n 96.0 0.015 3.9E-07 34.8 5.1 182 162-391 14-211 (229)
248 KOG2749 consensus 95.9 0.12 3.2E-06 29.2 10.9 96 104-207 47-147 (415)
249 cd04114 Rab30 Rab30 subfamily. 95.9 0.13 3.3E-06 29.1 10.0 110 274-401 55-169 (169)
250 cd04166 CysN_ATPS CysN_ATPS su 95.9 0.043 1.1E-06 32.0 6.9 103 273-384 75-186 (208)
251 PRK07773 replicative DNA helic 95.8 0.055 1.4E-06 31.4 7.4 46 160-206 202-247 (868)
252 PRK06067 flagellar accessory p 95.8 0.14 3.5E-06 28.9 9.9 43 159-203 30-72 (241)
253 cd01866 Rab2 Rab2 subfamily. 95.8 0.15 3.8E-06 28.8 10.6 113 273-403 51-168 (168)
254 PRK00007 elongation factor G; 95.8 0.15 3.8E-06 28.7 12.4 40 65-104 117-157 (693)
255 PRK08533 flagellar accessory p 95.7 0.15 3.8E-06 28.7 12.2 104 159-283 22-126 (230)
256 PRK09302 circadian clock prote 95.7 0.15 3.9E-06 28.7 9.7 97 159-282 264-364 (501)
257 cd04144 Ras2 Ras2 subfamily. 95.7 0.081 2.1E-06 30.4 7.8 135 274-426 46-188 (190)
258 PRK03846 adenylylsulfate kinas 95.7 0.023 5.8E-07 33.7 5.0 63 157-225 20-82 (198)
259 cd01861 Rab6 Rab6 subfamily. 95.7 0.16 4E-06 28.6 9.8 110 273-400 47-161 (161)
260 TIGR02868 CydC ABC transporter 95.7 0.05 1.3E-06 31.6 6.7 60 134-203 368-427 (566)
261 PRK05124 cysN sulfate adenylyl 95.7 0.035 9E-07 32.6 5.9 67 273-341 105-173 (475)
262 COG0467 RAD55 RecA-superfamily 95.6 0.13 3.3E-06 29.1 8.7 48 157-206 19-66 (260)
263 pfam03205 MobB Molybdopterin g 95.6 0.038 9.8E-07 32.3 6.0 42 163-206 2-44 (122)
264 PRK05506 bifunctional sulfate 95.6 0.038 9.8E-07 32.3 5.9 13 271-283 391-403 (613)
265 cd03228 ABCC_MRP_Like The MRP 95.5 0.052 1.3E-06 31.5 6.4 41 159-201 26-66 (171)
266 cd04125 RabA_like RabA-like su 95.5 0.13 3.4E-06 29.1 8.4 116 273-406 47-167 (188)
267 PRK03003 engA GTP-binding prot 95.5 0.19 4.7E-06 28.1 19.1 192 78-341 118-335 (474)
268 cd04117 Rab15 Rab15 subfamily. 95.5 0.18 4.5E-06 28.3 8.9 110 273-400 47-161 (161)
269 PRK11174 cysteine/glutathione 95.5 0.12 3.1E-06 29.3 8.0 41 159-202 374-414 (588)
270 smart00382 AAA ATPases associa 95.4 0.039 1E-06 32.3 5.5 41 161-203 2-42 (148)
271 cd03116 MobB Molybdenum is an 95.4 0.052 1.3E-06 31.5 6.1 40 162-203 2-41 (159)
272 cd01865 Rab3 Rab3 subfamily. 95.4 0.19 5E-06 28.0 9.9 111 274-402 49-164 (165)
273 cd00477 FTHFS Formyltetrahydro 95.4 0.2 5.1E-06 27.9 14.8 100 305-407 332-446 (524)
274 PRK05973 replicative DNA helic 95.4 0.18 4.6E-06 28.2 8.7 45 160-206 63-107 (237)
275 cd03252 ABCC_Hemolysin The ABC 95.4 0.045 1.2E-06 31.9 5.6 42 159-202 26-67 (237)
276 pfam01268 FTHFS Formate--tetra 95.4 0.21 5.3E-06 27.8 16.3 89 314-407 360-461 (555)
277 PRK13657 cyclic beta-1,2-gluca 95.3 0.037 9.4E-07 32.5 4.8 36 159-196 359-394 (585)
278 PRK07667 uridine kinase; Provi 95.2 0.066 1.7E-06 30.9 6.1 44 158-203 10-54 (190)
279 pfam00931 NB-ARC NB-ARC domain 95.2 0.016 4E-07 34.7 2.9 25 160-185 18-42 (285)
280 cd02028 UMPK_like Uridine mono 95.2 0.038 9.8E-07 32.3 4.8 40 163-204 1-40 (179)
281 TIGR03172 probable selenium-de 95.2 0.23 5.8E-06 27.6 12.1 127 163-307 1-137 (232)
282 PRK09518 bifunctional cytidyla 95.2 0.23 5.8E-06 27.6 19.2 79 274-357 499-590 (714)
283 smart00175 RAB Rab subfamily o 95.2 0.23 6E-06 27.5 10.0 111 274-402 48-163 (164)
284 TIGR02012 tigrfam_recA protein 95.2 0.12 3.1E-06 29.2 7.3 46 156-203 50-95 (322)
285 cd03254 ABCC_Glucan_exporter_l 95.2 0.038 9.8E-07 32.3 4.7 43 158-202 26-68 (229)
286 cd03248 ABCC_TAP TAP, the Tran 95.1 0.069 1.8E-06 30.8 5.8 28 159-187 38-65 (226)
287 cd01867 Rab8_Rab10_Rab13_like 95.1 0.25 6.4E-06 27.3 10.9 111 274-402 51-166 (167)
288 PRK11107 hybrid sensory histid 95.1 0.25 6.4E-06 27.3 16.5 117 29-151 669-787 (920)
289 cd03278 ABC_SMC_barmotin Barmo 95.0 0.16 4.2E-06 28.5 7.6 28 159-188 21-48 (197)
290 cd02027 APSK Adenosine 5'-phos 95.0 0.042 1.1E-06 32.1 4.5 54 163-222 1-54 (149)
291 PTZ00099 rab6; Provisional 95.0 0.27 6.8E-06 27.2 10.1 113 274-404 28-145 (176)
292 cd01868 Rab11_like Rab11-like. 95.0 0.27 6.9E-06 27.1 9.7 109 274-400 51-164 (165)
293 PRK07560 elongation factor EF- 95.0 0.27 6.9E-06 27.1 9.9 18 259-276 437-454 (730)
294 COG1484 DnaC DNA replication p 94.9 0.079 2E-06 30.4 5.8 38 160-199 104-141 (254)
295 cd03246 ABCC_Protease_Secretio 94.9 0.13 3.2E-06 29.2 6.8 36 159-196 26-61 (173)
296 pfam07755 DUF1611 Protein of u 94.9 0.28 7.2E-06 27.0 14.2 247 63-363 24-294 (302)
297 KOG0744 consensus 94.9 0.13 3.2E-06 29.1 6.7 152 160-315 176-336 (423)
298 TIGR00416 sms DNA repair prote 94.8 0.1 2.6E-06 29.7 6.2 158 161-341 103-290 (481)
299 cd03244 ABCC_MRP_domain2 Domai 94.8 0.11 2.8E-06 29.5 6.3 41 159-201 28-68 (221)
300 COG1124 DppF ABC-type dipeptid 94.8 0.18 4.7E-06 28.2 7.3 68 158-228 30-111 (252)
301 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.7 0.13 3.2E-06 29.1 6.3 41 159-201 27-67 (238)
302 cd03291 ABCC_CFTR1 The CFTR su 94.7 0.042 1.1E-06 32.1 3.8 29 158-187 60-88 (282)
303 cd03245 ABCC_bacteriocin_expor 94.7 0.069 1.7E-06 30.8 4.9 38 159-198 28-65 (220)
304 PRK11819 putative ABC transpor 94.7 0.28 7.2E-06 27.0 8.1 28 159-187 348-375 (556)
305 PRK12740 elongation factor G; 94.7 0.21 5.2E-06 27.9 7.3 17 260-276 436-452 (670)
306 COG4988 CydD ABC-type transpor 94.7 0.071 1.8E-06 30.7 5.0 125 159-290 345-491 (559)
307 PRK04328 hypothetical protein; 94.6 0.1 2.6E-06 29.7 5.8 44 158-203 21-64 (250)
308 cd02023 UMPK Uridine monophosp 94.6 0.066 1.7E-06 30.9 4.7 177 163-366 1-181 (198)
309 COG1066 Sms Predicted ATP-depe 94.6 0.34 8.5E-06 26.6 10.2 64 126-200 66-129 (456)
310 PRK12739 elongation factor G; 94.6 0.34 8.7E-06 26.5 13.6 37 66-103 117-155 (693)
311 pfam06745 KaiC KaiC. This fami 94.5 0.11 2.9E-06 29.5 5.7 45 158-203 16-60 (231)
312 PRK09112 DNA polymerase III su 94.5 0.35 8.9E-06 26.4 11.3 51 131-187 14-70 (352)
313 cd01860 Rab5_related Rab5-rela 94.5 0.36 9.1E-06 26.4 9.9 109 274-400 49-162 (163)
314 PRK09554 feoB ferrous iron tra 94.5 0.36 9.1E-06 26.4 8.9 10 277-286 484-493 (772)
315 PRK06217 hypothetical protein; 94.4 0.31 7.8E-06 26.8 7.8 175 162-401 2-178 (185)
316 PRK08261 fabG 3-ketoacyl-(acyl 94.4 0.37 9.4E-06 26.3 12.9 119 75-202 77-242 (447)
317 COG1123 ATPase components of v 94.4 0.12 3.1E-06 29.3 5.7 66 159-226 315-394 (539)
318 PRK10751 molybdopterin-guanine 94.4 0.15 3.7E-06 28.8 6.1 40 162-203 3-42 (170)
319 cd03251 ABCC_MsbA MsbA is an e 94.4 0.13 3.4E-06 29.0 5.9 43 158-202 25-67 (234)
320 cd04113 Rab4 Rab4 subfamily. 94.4 0.38 9.6E-06 26.2 10.1 109 274-400 48-161 (161)
321 cd01883 EF1_alpha Eukaryotic e 94.3 0.15 3.9E-06 28.7 6.0 67 273-341 75-150 (219)
322 cd03253 ABCC_ATM1_transporter 94.3 0.11 2.8E-06 29.6 5.3 43 158-202 24-66 (236)
323 COG3598 RepA RecA-family ATPas 94.3 0.38 9.8E-06 26.2 11.2 47 159-206 87-142 (402)
324 pfam08419 consensus 94.3 0.05 1.3E-06 31.6 3.6 65 115-183 28-96 (116)
325 PRK11160 cysteine/glutathione 94.3 0.21 5.3E-06 27.8 6.7 41 159-201 365-405 (575)
326 cd04148 RGK RGK subfamily. Th 94.2 0.4 1E-05 26.1 11.6 110 275-402 50-164 (221)
327 PRK09519 recA recombinase A; R 94.2 0.4 1E-05 26.1 11.8 12 330-341 684-695 (790)
328 PRK04220 2-phosphoglycerate ki 94.2 0.056 1.4E-06 31.3 3.6 25 162-186 92-116 (306)
329 TIGR00763 lon ATP-dependent pr 94.2 0.033 8.5E-07 32.7 2.4 33 157-190 445-478 (941)
330 PRK08181 transposase; Validate 94.2 0.28 7.3E-06 27.0 7.2 117 60-200 19-143 (269)
331 cd01894 EngA1 EngA1 subfamily. 94.2 0.14 3.7E-06 28.8 5.6 67 274-343 44-120 (157)
332 PRK01889 ribosome-associated G 94.2 0.42 1.1E-05 26.0 9.8 96 79-184 113-216 (353)
333 pfam00485 PRK Phosphoribulokin 94.2 0.048 1.2E-06 31.7 3.2 185 163-367 1-191 (196)
334 COG1160 Predicted GTPases [Gen 94.1 0.42 1.1E-05 26.0 15.1 210 78-357 84-318 (444)
335 PRK06547 hypothetical protein; 94.1 0.093 2.4E-06 30.0 4.6 37 158-198 12-48 (184)
336 cd01887 IF2_eIF5B IF2/eIF5B (i 94.1 0.22 5.5E-06 27.7 6.4 66 274-342 49-116 (168)
337 cd00154 Rab Rab family. Rab G 94.1 0.37 9.5E-06 26.3 7.6 78 273-350 47-127 (159)
338 cd03229 ABC_Class3 This class 94.0 0.19 4.8E-06 28.1 6.0 28 158-186 23-50 (178)
339 cd04122 Rab14 Rab14 subfamily. 94.0 0.44 1.1E-05 25.8 8.6 111 273-401 49-164 (166)
340 COG1663 LpxK Tetraacyldisaccha 94.0 0.23 6E-06 27.5 6.4 70 132-203 18-89 (336)
341 pfam08423 Rad51 Rad51. Rad51 i 93.9 0.46 1.2E-05 25.7 11.6 46 158-204 40-90 (261)
342 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 93.9 0.47 1.2E-05 25.7 10.9 112 273-402 49-165 (166)
343 cd03297 ABC_ModC_molybdenum_tr 93.9 0.14 3.7E-06 28.8 5.2 26 160-186 22-47 (214)
344 cd04163 Era Era subfamily. Er 93.8 0.11 2.8E-06 29.5 4.5 65 275-342 51-125 (168)
345 PRK13409 putative ATPase RIL; 93.8 0.49 1.2E-05 25.5 7.8 140 159-309 363-515 (590)
346 PRK00139 murE UDP-N-acetylmura 93.7 0.34 8.8E-06 26.5 6.9 35 159-197 98-132 (481)
347 TIGR02632 RhaD_aldol-ADH rhamn 93.7 0.061 1.6E-06 31.1 3.0 248 28-319 257-563 (709)
348 cd04155 Arl3 Arl3 subfamily. 93.7 0.29 7.5E-06 26.9 6.5 83 274-358 57-143 (173)
349 cd04115 Rab33B_Rab33A Rab33B/R 93.7 0.51 1.3E-05 25.4 9.7 109 274-400 50-168 (170)
350 cd04123 Rab21 Rab21 subfamily. 93.7 0.51 1.3E-05 25.4 8.6 111 273-401 47-162 (162)
351 COG2074 2-phosphoglycerate kin 93.7 0.2 5E-06 28.0 5.6 237 118-402 39-287 (299)
352 PRK05480 uridine kinase; Provi 93.7 0.14 3.6E-06 28.8 4.8 182 161-366 6-188 (209)
353 cd03257 ABC_NikE_OppD_transpor 93.6 0.19 4.8E-06 28.1 5.4 44 158-203 28-71 (228)
354 cd01121 Sms Sms (bacterial rad 93.6 0.16 4E-06 28.6 5.0 53 137-199 66-118 (372)
355 PRK02006 murD UDP-N-acetylmura 93.6 0.52 1.3E-05 25.4 11.5 119 64-197 18-154 (501)
356 COG2274 SunT ABC-type bacterio 93.6 0.09 2.3E-06 30.1 3.7 42 159-202 497-538 (709)
357 pfam02421 FeoB_N Ferrous iron 93.6 0.31 7.8E-06 26.8 6.4 79 274-357 45-135 (188)
358 KOG0635 consensus 93.6 0.28 7.1E-06 27.1 6.2 108 159-284 29-139 (207)
359 COG0378 HypB Ni2+-binding GTPa 93.6 0.54 1.4E-05 25.3 8.6 45 161-208 13-58 (202)
360 cd04147 Ras_dva Ras-dva subfam 93.5 0.54 1.4E-05 25.3 8.5 111 274-402 46-164 (198)
361 cd01120 RecA-like_NTPases RecA 93.5 0.16 4.1E-06 28.5 4.9 38 164-203 2-39 (165)
362 PRK10875 recD exonuclease V su 93.5 0.44 1.1E-05 25.8 7.1 74 134-210 127-210 (607)
363 cd04127 Rab27A Rab27a subfamil 93.5 0.55 1.4E-05 25.2 10.0 111 275-403 63-179 (180)
364 cd01895 EngA2 EngA2 subfamily. 93.5 0.23 5.8E-06 27.6 5.6 79 274-355 49-140 (174)
365 PRK11147 ABC transporter ATPas 93.4 0.36 9.2E-06 26.4 6.6 146 159-312 343-501 (632)
366 PRK00093 engA GTP-binding prot 93.4 0.58 1.5E-05 25.1 17.6 207 79-358 85-313 (438)
367 pfam02702 KdpD Osmosensitive K 93.4 0.36 9.1E-06 26.4 6.5 44 158-202 1-44 (211)
368 PRK08233 hypothetical protein; 93.3 0.59 1.5E-05 25.0 9.1 156 161-365 3-160 (182)
369 PRK08691 DNA polymerase III su 93.3 0.48 1.2E-05 25.6 7.0 33 116-148 322-354 (704)
370 cd02025 PanK Pantothenate kina 93.2 0.32 8.2E-06 26.7 6.1 39 163-202 1-40 (220)
371 PRK08939 primosomal protein Dn 93.2 0.38 9.6E-06 26.3 6.4 75 121-199 119-193 (306)
372 pfam02492 cobW CobW/HypB/UreG, 93.2 0.61 1.5E-05 25.0 13.0 156 164-355 2-163 (174)
373 cd01889 SelB_euk SelB subfamil 93.2 0.26 6.6E-06 27.2 5.6 66 273-341 66-133 (192)
374 PRK10419 nikE nickel transport 93.2 0.1 2.6E-06 29.7 3.5 43 158-202 35-77 (266)
375 cd04152 Arl4_Arl7 Arl4/Arl7 su 93.2 0.62 1.6E-05 24.9 8.8 118 274-405 51-174 (183)
376 PRK03003 engA GTP-binding prot 93.1 0.52 1.3E-05 25.4 7.0 33 162-197 120-152 (474)
377 cd04171 SelB SelB subfamily. 93.1 0.23 5.9E-06 27.5 5.2 66 275-342 51-118 (164)
378 TIGR02928 TIGR02928 orc1/cdc6 93.1 0.64 1.6E-05 24.8 9.5 186 139-372 26-219 (383)
379 cd03290 ABCC_SUR1_N The SUR do 93.1 0.22 5.5E-06 27.7 5.0 37 158-196 24-60 (218)
380 cd04120 Rab12 Rab12 subfamily. 93.1 0.64 1.6E-05 24.8 9.9 115 274-406 48-168 (202)
381 PRK08327 acetolactate synthase 93.0 0.66 1.7E-05 24.7 13.7 23 172-195 230-252 (568)
382 PRK06526 transposase; Provisio 93.0 0.18 4.7E-06 28.2 4.5 116 60-200 12-135 (254)
383 KOG2004 consensus 93.0 0.11 2.9E-06 29.4 3.5 32 158-190 435-466 (906)
384 PRK00652 lpxK tetraacyldisacch 92.9 0.41 1E-05 26.0 6.2 70 132-202 17-90 (334)
385 PTZ00301 uridine kinase; Provi 92.9 0.26 6.7E-06 27.2 5.3 184 162-367 4-190 (210)
386 PRK12339 2-phosphoglycerate ki 92.9 0.12 3E-06 29.4 3.4 24 163-186 4-27 (197)
387 pfam01695 IstB IstB-like ATP b 92.8 0.23 5.9E-06 27.6 4.9 40 159-200 45-84 (178)
388 PRK10636 putative ABC transpor 92.8 0.69 1.8E-05 24.6 7.4 142 159-312 336-491 (638)
389 PRK09140 2-dehydro-3-deoxy-6-p 92.8 0.7 1.8E-05 24.6 8.6 69 79-149 35-103 (206)
390 TIGR02203 MsbA_lipidA lipid A 92.8 0.076 1.9E-06 30.5 2.4 120 61-199 298-423 (603)
391 PRK10790 putative multidrug tr 92.8 0.7 1.8E-05 24.6 9.2 41 159-201 365-405 (593)
392 pfam09818 ABC_ATPase Predicted 92.8 0.17 4.4E-06 28.4 4.1 118 77-203 220-351 (447)
393 PRK10522 multidrug transporter 92.7 0.71 1.8E-05 24.5 7.4 42 159-202 347-388 (547)
394 cd04154 Arl2 Arl2 subfamily. 92.7 0.66 1.7E-05 24.8 7.1 83 274-358 57-143 (173)
395 KOG1805 consensus 92.7 0.41 1.1E-05 26.0 6.0 129 161-306 684-829 (1100)
396 cd01124 KaiC KaiC is a circadi 92.7 0.23 6E-06 27.5 4.8 36 166-202 3-38 (187)
397 PRK08904 consensus 92.6 0.74 1.9E-05 24.5 8.1 86 60-148 16-101 (207)
398 PRK09183 transposase/IS protei 92.6 0.25 6.3E-06 27.4 4.8 112 60-200 15-138 (258)
399 cd04124 RabL2 RabL2 subfamily. 92.6 0.74 1.9E-05 24.4 8.1 107 273-401 47-158 (161)
400 COG1116 TauB ABC-type nitrate/ 92.6 0.6 1.5E-05 25.0 6.7 53 158-213 26-81 (248)
401 PRK08118 topology modulation p 92.6 0.2 5.2E-06 27.9 4.3 94 162-313 2-95 (167)
402 KOG1534 consensus 92.6 0.75 1.9E-05 24.4 8.7 104 164-287 6-110 (273)
403 KOG4658 consensus 92.6 0.2 5.1E-06 27.9 4.3 44 137-187 161-204 (889)
404 PRK07455 keto-hydroxyglutarate 92.5 0.76 1.9E-05 24.4 8.5 87 60-149 19-105 (210)
405 cd01884 EF_Tu EF-Tu subfamily. 92.4 0.39 1E-05 26.1 5.6 67 274-342 64-132 (195)
406 cd01888 eIF2_gamma eIF2-gamma 92.4 0.39 9.9E-06 26.2 5.6 65 275-341 83-150 (203)
407 TIGR03201 dearomat_had 6-hydro 92.4 0.79 2E-05 24.3 10.2 49 157-212 163-211 (349)
408 cd01879 FeoB Ferrous iron tran 92.4 0.63 1.6E-05 24.9 6.6 59 295-358 73-133 (158)
409 cd03250 ABCC_MRP_domain1 Domai 92.3 0.16 4E-06 28.6 3.5 28 158-186 28-55 (204)
410 PRK07261 topology modulation p 92.3 0.23 6E-06 27.5 4.3 32 163-199 2-33 (171)
411 TIGR03594 GTPase_EngA ribosome 92.3 0.54 1.4E-05 25.3 6.2 216 68-357 72-311 (429)
412 cd00878 Arf_Arl Arf (ADP-ribos 92.3 0.75 1.9E-05 24.4 6.9 83 274-358 42-128 (158)
413 TIGR02397 dnaX_nterm DNA polym 92.3 0.21 5.2E-06 27.9 4.0 159 140-327 20-227 (363)
414 PRK12338 hypothetical protein; 92.2 0.15 3.9E-06 28.7 3.3 30 163-196 5-34 (320)
415 cd04134 Rho3 Rho3 subfamily. 92.2 0.83 2.1E-05 24.1 10.0 129 273-408 46-181 (189)
416 cd01878 HflX HflX subfamily. 92.2 0.84 2.1E-05 24.1 8.4 52 291-342 115-167 (204)
417 KOG2968 consensus 92.2 0.84 2.1E-05 24.1 11.3 57 263-319 696-753 (1158)
418 COG1160 Predicted GTPases [Gen 92.2 0.49 1.2E-05 25.6 5.8 18 107-124 179-198 (444)
419 cd00009 AAA The AAA+ (ATPases 92.2 0.23 5.9E-06 27.6 4.2 39 160-200 18-56 (151)
420 cd03294 ABC_Pro_Gly_Bertaine T 92.2 0.39 9.9E-06 26.2 5.3 42 158-201 47-88 (269)
421 cd04137 RheB Rheb (Ras Homolog 92.2 0.84 2.2E-05 24.1 11.0 119 274-410 48-172 (180)
422 cd03369 ABCC_NFT1 Domain 2 of 92.1 0.87 2.2E-05 24.0 8.5 41 159-201 32-72 (207)
423 COG1493 HprK Serine kinase of 92.0 0.88 2.2E-05 24.0 9.0 89 94-183 69-166 (308)
424 PTZ00141 elongation factor 1 a 92.0 0.27 6.8E-06 27.2 4.3 14 102-115 106-119 (443)
425 PRK05855 short chain dehydroge 92.0 0.22 5.7E-06 27.6 3.9 155 105-269 232-421 (582)
426 PRK05564 DNA polymerase III su 92.0 0.89 2.3E-05 23.9 10.0 42 140-187 10-51 (313)
427 pfam05729 NACHT NACHT domain. 91.9 0.2 5E-06 28.0 3.6 27 162-189 1-27 (165)
428 cd03258 ABC_MetN_methionine_tr 91.9 0.46 1.2E-05 25.7 5.5 43 158-202 28-70 (233)
429 PRK12377 putative replication 91.9 0.33 8.5E-06 26.6 4.7 68 126-198 61-136 (248)
430 PRK06872 DNA polymerase III su 91.9 0.92 2.3E-05 23.9 8.4 32 117-148 319-350 (696)
431 cd03256 ABC_PhnC_transporter A 91.9 0.61 1.6E-05 25.0 6.0 43 158-202 24-66 (241)
432 PRK13506 formate--tetrahydrofo 91.8 0.44 1.1E-05 25.8 5.3 52 157-212 50-104 (577)
433 PRK12337 2-phosphoglycerate ki 91.8 0.19 4.9E-06 28.0 3.4 26 161-186 261-286 (492)
434 PRK08116 hypothetical protein; 91.8 0.33 8.4E-06 26.6 4.6 38 160-199 107-144 (262)
435 PRK05718 keto-hydroxyglutarate 91.8 0.93 2.4E-05 23.8 7.9 86 60-148 21-106 (212)
436 cd00876 Ras Ras family. The R 91.8 0.93 2.4E-05 23.8 10.6 110 273-400 45-160 (160)
437 cd03247 ABCC_cytochrome_bd The 91.8 0.93 2.4E-05 23.8 7.1 36 159-196 26-61 (178)
438 PRK12317 elongation factor 1-a 91.6 0.65 1.6E-05 24.8 6.0 64 275-340 85-152 (426)
439 PRK10490 sensor protein KdpD; 91.6 0.97 2.5E-05 23.7 8.5 21 60-85 90-110 (895)
440 PRK10070 glycine betaine trans 91.6 0.98 2.5E-05 23.7 7.2 96 117-222 17-127 (400)
441 PRK08782 consensus 91.6 0.98 2.5E-05 23.7 9.5 87 60-149 23-109 (219)
442 COG1072 CoaA Panthothenate kin 91.6 0.99 2.5E-05 23.7 7.9 72 163-240 84-157 (283)
443 pfam02572 CobA_CobO_BtuR ATP:c 91.5 0.84 2.1E-05 24.1 6.5 37 160-199 3-39 (172)
444 TIGR01846 type_I_sec_HlyB type 91.5 0.24 6E-06 27.5 3.6 107 159-291 489-607 (703)
445 TIGR03375 type_I_sec_LssB type 91.4 0.29 7.4E-06 26.9 4.0 37 159-198 489-525 (694)
446 cd03261 ABC_Org_Solvent_Resist 91.4 0.62 1.6E-05 24.9 5.7 39 158-198 23-61 (235)
447 TIGR02173 cyt_kin_arch cytidyl 91.4 0.15 3.7E-06 28.8 2.4 108 164-315 2-112 (173)
448 TIGR01394 TypA_BipA GTP-bindin 91.4 0.056 1.4E-06 31.3 0.3 126 275-406 70-203 (609)
449 PRK00089 era GTP-binding prote 91.4 0.2 5.1E-06 27.9 3.1 115 158-342 6-130 (296)
450 cd04136 Rap_like Rap-like subf 91.4 1 2.6E-05 23.5 10.1 109 274-400 48-162 (163)
451 pfam02399 Herpes_ori_bp Origin 91.3 0.62 1.6E-05 24.9 5.6 162 22-207 128-322 (829)
452 COG4167 SapF ABC-type antimicr 91.2 0.23 5.9E-06 27.5 3.3 49 158-208 36-84 (267)
453 TIGR00972 3a0107s01c2 phosphat 91.2 1.1 2.8E-05 23.4 8.4 50 159-209 25-78 (248)
454 PRK12771 putative glutamate sy 91.2 1.1 2.8E-05 23.4 16.2 70 135-212 107-180 (560)
455 cd01863 Rab18 Rab18 subfamily. 91.1 1.1 2.8E-05 23.4 8.7 108 274-400 48-161 (161)
456 cd04176 Rap2 Rap2 subgroup. T 91.1 1.1 2.8E-05 23.4 10.7 108 275-400 49-162 (163)
457 PRK11823 DNA repair protein Ra 91.1 0.47 1.2E-05 25.6 4.8 34 164-199 92-125 (454)
458 cd04153 Arl5_Arl8 Arl5/Arl8 su 91.0 0.94 2.4E-05 23.8 6.3 82 274-357 58-143 (174)
459 cd04150 Arf1_5_like Arf1-Arf5- 91.0 0.85 2.2E-05 24.1 6.1 83 274-358 43-129 (159)
460 cd01864 Rab19 Rab19 subfamily. 91.0 0.73 1.9E-05 24.5 5.7 109 274-400 51-165 (165)
461 PRK13505 formate--tetrahydrofo 90.9 0.59 1.5E-05 25.0 5.1 90 313-407 359-462 (556)
462 PTZ00336 elongation factor 1-a 90.9 0.42 1.1E-05 26.0 4.3 12 296-307 108-119 (449)
463 cd04160 Arfrp1 Arfrp1 subfamil 90.6 0.92 2.3E-05 23.9 6.0 81 274-356 49-133 (167)
464 PRK08104 consensus 90.6 1.2 3.1E-05 23.1 8.0 67 79-148 40-106 (212)
465 cd04158 ARD1 ARD1 subfamily. 90.6 1.1 2.9E-05 23.3 6.4 118 273-404 41-164 (169)
466 cd00879 Sar1 Sar1 subfamily. 90.5 1.2 3.2E-05 23.1 7.0 85 274-360 62-150 (190)
467 PTZ00265 multidrug resistance 90.4 0.7 1.8E-05 24.6 5.2 43 159-203 409-452 (1467)
468 PRK07003 DNA polymerase III su 90.4 1.3 3.2E-05 23.0 9.0 33 116-148 322-354 (816)
469 PRK07952 DNA replication prote 90.4 0.56 1.4E-05 25.2 4.7 33 163-197 98-130 (242)
470 cd02029 PRK_like Phosphoribulo 90.4 0.54 1.4E-05 25.3 4.6 38 163-202 1-38 (277)
471 smart00177 ARF ARF-like small 90.4 1.1 2.8E-05 23.3 6.2 112 274-400 56-173 (175)
472 PRK13507 formate--tetrahydrofo 90.3 0.69 1.7E-05 24.6 5.1 92 313-407 389-491 (587)
473 PRK04308 murD UDP-N-acetylmura 90.3 1.3 3.3E-05 22.9 12.0 118 63-197 15-142 (445)
474 KOG0448 consensus 90.2 1.3 3.4E-05 22.9 6.7 76 276-354 207-287 (749)
475 COG0572 Udk Uridine kinase [Nu 90.2 0.46 1.2E-05 25.7 4.1 185 159-367 6-191 (218)
476 PRK06015 keto-hydroxyglutarate 90.2 1.3 3.4E-05 22.9 10.0 86 60-148 21-106 (212)
477 pfam07279 DUF1442 Protein of u 90.2 1.3 3.4E-05 22.9 10.9 73 110-197 3-76 (218)
478 cd04141 Rit_Rin_Ric Rit/Rin/Ri 90.2 1.3 3.4E-05 22.9 10.0 114 274-405 49-168 (172)
479 cd03215 ABC_Carb_Monos_II This 90.1 1.4 3.5E-05 22.8 7.5 45 157-203 22-66 (182)
480 cd04149 Arf6 Arf6 subfamily. 90.0 1.3 3.4E-05 22.8 6.4 83 274-358 52-138 (168)
481 PRK04213 GTP-binding protein; 90.0 1.4 3.5E-05 22.8 6.4 42 315-359 112-153 (195)
482 PRK00049 elongation factor Tu; 90.0 0.82 2.1E-05 24.2 5.3 66 274-341 75-142 (397)
483 pfam01935 DUF87 Domain of unkn 90.0 0.61 1.5E-05 25.0 4.6 43 161-204 23-65 (218)
484 PRK07133 DNA polymerase III su 90.0 1.4 3.5E-05 22.8 9.3 43 140-188 24-66 (718)
485 COG0028 IlvB Thiamine pyrophos 90.0 1.4 3.5E-05 22.8 14.0 77 34-114 21-98 (550)
486 cd00880 Era_like Era (E. coli 89.9 0.7 1.8E-05 24.6 4.9 64 276-342 46-118 (163)
487 cd04161 Arl2l1_Arl13_like Arl2 89.9 0.99 2.5E-05 23.7 5.6 85 273-359 41-129 (167)
488 pfam01081 Aldolase KDPG and KH 89.9 1.4 3.5E-05 22.8 8.3 85 61-148 15-99 (196)
489 COG4987 CydC ABC-type transpor 89.9 0.54 1.4E-05 25.3 4.2 39 159-199 362-400 (573)
490 TIGR02770 nickel_nikD nickel i 89.8 0.31 7.8E-06 26.8 3.0 203 158-395 9-236 (239)
491 COG4108 PrfC Peptide chain rel 89.8 1.3 3.3E-05 23.0 6.1 19 287-305 95-113 (528)
492 cd04111 Rab39 Rab39 subfamily. 89.8 1.4 3.6E-05 22.7 10.3 112 276-405 53-170 (211)
493 PRK07994 DNA polymerase III su 89.8 1.4 3.6E-05 22.7 8.4 46 105-150 146-191 (643)
494 cd03230 ABC_DR_subfamily_A Thi 89.8 1.4 3.6E-05 22.7 7.1 42 158-201 23-64 (173)
495 cd00877 Ran Ran (Ras-related n 89.8 1.4 3.6E-05 22.7 11.4 111 274-405 48-163 (166)
496 pfam00025 Arf ADP-ribosylation 89.8 1.4 3.6E-05 22.7 9.9 111 274-399 57-173 (174)
497 PRK11831 putative ABC transpor 89.8 0.78 2E-05 24.3 5.0 41 158-200 31-71 (269)
498 PRK12810 gltD glutamate syntha 89.8 1.4 3.7E-05 22.7 9.6 72 134-213 111-187 (472)
499 TIGR01054 rgy reverse gyrase; 89.8 0.41 1.1E-05 26.0 3.6 150 118-281 44-216 (1843)
500 PRK10787 DNA-binding ATP-depen 89.7 0.42 1.1E-05 25.9 3.6 53 137-190 325-377 (784)
No 1
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=383.42 Aligned_cols=359 Identities=31% Similarity=0.472 Sum_probs=293.5
Q ss_pred HHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 64018730599983898999999988641100202237306998999999861899849999805987677889998885
Q gi|254780725|r 22 SMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAE 101 (427)
Q Consensus 22 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~ 101 (427)
..+..++.+...+|..-.+...+... +.++..+-.-...|.-.....++.-.+.+-..+.+.....++.+--++
T Consensus 5 ~~a~~~~~~~~~i~~~s~~~v~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~f~~~~~~~~~~~~~~~~d~~~~~~---- 78 (366)
T COG4963 5 MMEMGVLFLAILITPASNHGVNIANG--MQLILNLDLINKKDADFLSLVHSIFVDEGAEPLGSETARLADIKNIKE---- 78 (366)
T ss_pred HHCCCCEEECEEEEECCCCCCCHHHH--HHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCCEEEECCCHHHHHHHHH----
T ss_conf 10245332021688725666204220--477765432113672022123314578775431332011135555566----
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHH
Q ss_conf 32899808998168718999999976562643189998999997631023322234567537999746988775689999
Q gi|254780725|r 102 VCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHN 181 (427)
Q Consensus 102 ~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~n 181 (427)
....+++|+.|++..+. ...+.++.||+++|+|+|||+|.||+|+|
T Consensus 79 -------------------~~~~~~a~~~~~v~~~~---------------~s~s~~~~~r~iafl~akgg~g~stlA~n 124 (366)
T COG4963 79 -------------------NLAAIRAGVNDCVDIES---------------DSISIAQQGRELAFLGAKGGVGTSTLAHN 124 (366)
T ss_pred -------------------HHHHHHHHHHHEEECCC---------------CCCHHHHHCEEEEEEEECCCCCHHHHHHH
T ss_conf -------------------77887642101000245---------------65012110328999960588666899999
Q ss_pred HHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCH
Q ss_conf 99999962699499997879898603343899878988863184561243376532024898068724876120320799
Q gi|254780725|r 182 CAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDE 261 (427)
Q Consensus 182 LA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~ 261 (427)
+||.++...+..|+|+|+|+++|+.+++|++++.+++++++++|+|+|+.++++.++++.+||++++++.++...+++..
T Consensus 125 ~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~~~~~~~~l~ll~a~~~~~~~~d~~~ 204 (366)
T COG4963 125 LAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLASGLKLLAAPTELAKNYDLKT 204 (366)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHCCCCC
T ss_conf 99998641487389997688876123430787214589886097876078777898616887633037744565215331
Q ss_pred HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 99999899985128889973888889899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 262 KMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 262 ~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
+.+..+++.++..||+||+|+|+.|.+|+..+|..||.+++|++++++|+|+++++++.+++.++++.++++|+|+++.+
T Consensus 205 ~~~~~Ll~~~~~~~~~vV~Dlp~~~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 205 GAVERLLDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred CHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC
T ss_conf 26999999764028838971897662589999862884999963638989999999999997377988956886522788
Q ss_pred CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCCCC--CCHHHHHHH
Q ss_conf 752005999999848953799068799999988479618988899989999999999985221223211--105899998
Q gi|254780725|r 342 KKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQ--SAMYTKIKK 419 (427)
Q Consensus 342 ~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~gr~~~~~~k--~~~~~~l~~ 419 (427)
+.++ .++|++.+|.+....+|+|+..+..|.|+|+|+.|.+|++|+++++.++++.+.++....+.+ +++.+.+.+
T Consensus 285 ~~~~--~~dl~~~~~i~~~~~~p~d~~~~~~A~n~g~~l~E~~~~~~~~k~l~~la~~l~~~~~~~r~~~~~~l~~~l~k 362 (366)
T COG4963 285 KRPE--PSDLEEILGIESLLVLPFDPALFGDAANNGRMLSEVDPGSPAAKALAQLAQSLGGRISGERRKKLRGLGKLLGK 362 (366)
T ss_pred CCCC--HHHHHHHHCCCHHCCCCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8999--99998884884001366770544444206960222377875889999999985376672101357889999877
Q ss_pred HHH
Q ss_conf 742
Q gi|254780725|r 420 IFN 422 (427)
Q Consensus 420 lf~ 422 (427)
+|+
T Consensus 363 ~~~ 365 (366)
T COG4963 363 LFR 365 (366)
T ss_pred HHC
T ss_conf 504
No 2
>CHL00175 minD septum-site determining protein; Validated
Probab=100.00 E-value=0 Score=323.35 Aligned_cols=261 Identities=19% Similarity=0.275 Sum_probs=226.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987--8988863184561243376
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVS 234 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~ 234 (427)
.+..+|||+|.|+||||||||+|+|||++||+ .|++|+++|+|+++++++.+||+++. +++.+++.+..++++..+.
T Consensus 9 ~~~m~kiIaV~s~KGGVGKTT~a~NLa~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~ 87 (279)
T CHL00175 9 VATMTRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVVYTAMEVLEGECRLDQALIR 87 (279)
T ss_pred HCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEE
T ss_conf 25988699997489984489999999999997-89988999578999987532686666667476640787664301342
Q ss_pred HHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 532024898068724876120320799999998999851-2888997388888989999986201254357877688999
Q gi|254780725|r 235 RLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 235 ~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~ 313 (427)
. ...++++++++..... .+.+..+.+..+++.++. .|||||||||++++.++.+++..||.+++|++|++.++++
T Consensus 88 ~---~~~~~l~ll~~~~~~~-~~~~~~~~~~~ll~~l~~~~yDyiiID~ppgl~~~~~~al~aad~viIvttpe~~al~d 163 (279)
T CHL00175 88 D---KRWPNLSLLPISKNRQ-RYNVTRKNMNMLVDSLKERNYDYILIDCPAGIDVGFINAIAPAKEAIVVTTPEITAIRD 163 (279)
T ss_pred C---CCCCCEEEEECCCHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHH
T ss_conf 5---7778779997897054-45741999999999997279999998189988899999999789069978997899999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCC---CCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 99999999981987675389995658987---520059999998489537990687999999884796189888999899
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPK---KPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~---~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
++++++.++..+. ..+.+|+|++.+.. ......+++++.++.+..+.||+|+.+ .+|.++|+|+....|+|+.+
T Consensus 164 a~~~i~~~~~~~~--~~~~lvvN~~~~~~~~~~~~~~~~~~~~~l~v~~lg~IP~D~~v-~~a~~~G~Pvv~~~P~S~~a 240 (279)
T CHL00175 164 ADRVAGLLEANGI--YNIKLLVNRVRPDMIKANDMMSVRDVQEMLGIPLLGAIPEDENV-IISTNRGEPLVLKKKLTLSG 240 (279)
T ss_pred HHHHHHHHHHCCC--CCCEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEECCCCHHH-HHCCCCCEEEEEECCCCHHH
T ss_conf 9999999997599--86213533564554354553449999997199346576787789-86130690589849999999
Q ss_pred HHHHHHHHHHHCCCCC----CCCCCCHHHHHHHHHHHHH
Q ss_conf 9999999998522122----3211105899998742340
Q gi|254780725|r 391 NLLVDFSRVLMGRVTV----SKPQSAMYTKIKKIFNMKC 425 (427)
Q Consensus 391 ~~~~~La~~i~gr~~~----~~~k~~~~~~l~~lf~rk~ 425 (427)
++|.+||++|.|+..+ ....++++++|+++|+||.
T Consensus 241 ~a~~~iA~~l~~~~~~~~~~~~~~~~~~~kl~~~f~~~~ 279 (279)
T CHL00175 241 IAFENAARRLVGKQVYFIDLDSPSKGPLKRLRRFFLGRS 279 (279)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCC
T ss_conf 999999999957876766555445659999999856689
No 3
>TIGR01968 minD_bact septum site-determining protein MinD; InterPro: IPR010223 This entry describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. In Escherichia coli, the cell division site is determined by the cooperative activity of min operon products MinC, MinD, and MinE . MinD is a membrane-associated ATPase and is a septum site-determining factor through the activation and regulation of MinC and MinE. MinD is also known to undergo a rapid pole-to-pole oscillation movement in vivo as observed by fluorescent microscopy. In plants, chloroplast division requires the dimerisation of stromal MinD . The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.; GO: 0016887 ATPase activity, 0000918 selection of site for barrier septum formation.
Probab=100.00 E-value=0 Score=317.58 Aligned_cols=254 Identities=20% Similarity=0.346 Sum_probs=227.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5379997469887756899999999996269949999787989860334389987--89888631845612433765320
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
+++|.|+|+||||||||+++||+.+||+ .|+||+|||+|..--++++.||++.+ |++.|++.+..++++++++.
T Consensus 1 ~~viViTSGKGGVGKTTtTANlG~aLA~-lG~kVvliD~DiGLRNLD~~lGLEnRivYt~vDVveG~C~l~qALikD--- 76 (272)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKD--- 76 (272)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCC---
T ss_conf 9589998178897735898999999996-198289995475703457774231035453554324842110010012---
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC--CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 248980687248761203207999999989998512--888997388888989999986201254357877688999999
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI--FPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~--yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
+..++|+|||+..+-+ -+.++++.+..+++.|++. |||||||||.+......+|...||..++|++|+++|+|++.|
T Consensus 77 Kr~~NL~LLpAsQ~rd-K~~~~~E~~~~lv~~Lk~~~~FDYviIDcPAGIE~GF~nAv~~Ad~AiVVttPEvsavRDADR 155 (272)
T TIGR01968 77 KRLENLYLLPASQTRD-KDAVTPEQMKKLVNELKEEEHFDYVIIDCPAGIESGFRNAVAPADEAIVVTTPEVSAVRDADR 155 (272)
T ss_pred CCCHHHHHHHHHHCCC-CCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCEEEEEECCCCCCHHHHHH
T ss_conf 6752356636530236-134697789999999854379307997378774356899875268358987787451002556
Q ss_pred HHHHHHHCCCCCC-----CCEEEEECCCCC---CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCC-C
Q ss_conf 9999998198767-----538999565898---752005999999848953799068799999988479618988899-9
Q gi|254780725|r 317 LIDVLKKLRPADK-----PPYLVLNQVKTP---KKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPK-S 387 (427)
Q Consensus 317 ll~~l~~~~~~~~-----~~~iVlNr~~~~---~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~-s 387 (427)
++-.|...+.-.+ +.++|+||..+. +..-++.+|+.+.|+.++.++||.|.+. -.|.|.|.|++. .++ |
T Consensus 156 vIGlLea~~~i~~~GEE~~~~LivNR~rP~mV~~G~Mlsi~Dv~~~L~i~LiGviPeD~~i-I~stN~GEP~vl-~~~L~ 233 (272)
T TIGR01968 156 VIGLLEAKGNIEEKGEEVKIKLIVNRLRPEMVKKGDMLSIDDVLEILSIPLIGVIPEDEEI-IVSTNKGEPVVL-NKKLS 233 (272)
T ss_pred HHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHCCCCCCHHHHHHHCCCCCEEEECCCCCE-EEEECCCEEEEE-CCCCC
T ss_conf 7524212455445776464347785156477416898278999986088616863299865-766456143544-60026
Q ss_pred HHHHHHHHHHHHHHCCCC-----CCCCCCCHHHHHHHHH
Q ss_conf 899999999999852212-----2321110589999874
Q gi|254780725|r 388 AIANLLVDFSRVLMGRVT-----VSKPQSAMYTKIKKIF 421 (427)
Q Consensus 388 ~~a~~~~~La~~i~gr~~-----~~~~k~~~~~~l~~lf 421 (427)
..+++|+.+|++|.|+.- -..++|++|..|+++|
T Consensus 234 ~~g~Af~~~ArRi~G~~vpf~~d~~~~~kG~~~~i~~~F 272 (272)
T TIGR01968 234 RAGKAFENIARRILGEEVPFEDDLEEQKKGFFARIKRFF 272 (272)
T ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHCC
T ss_conf 167889999875348864303334043022789987409
No 4
>PRK10818 cell division inhibitor MinD; Provisional
Probab=100.00 E-value=0 Score=304.05 Aligned_cols=256 Identities=20% Similarity=0.268 Sum_probs=211.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 75379997469887756899999999996269949999787989860334389987--8988863184561243376532
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~~~l 237 (427)
.+|||+|.|+||||||||+|+|||++||+ .|++|++||+|++.++++.++|.++. +++.+++.+...+++..+..
T Consensus 1 M~rvIaV~s~KGGVGKTT~avNLA~aLA~-~G~kVlliD~D~~~~n~~~~lg~~~~~~~~~~~vl~g~~~l~~~~i~~-- 77 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKD-- 77 (270)
T ss_pred CCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHEEEC--
T ss_conf 97499997899984189999999999997-799689996899998887345767766666898836998588905446--
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 024898068724876120320799999998999851-2888997388888989999986201254357877688999999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
+..++++++|++...+ ...+..+.+..+++.+.. .|||||||||++++..+..++.+||.+++|++|++.+++++++
T Consensus 78 -~~~~~l~ilpa~~~~~-~~~~~~~~~~~~l~~l~~~~yDyIiID~ppgl~~~~~~al~aad~vlvv~tpe~~al~da~~ 155 (270)
T PRK10818 78 -KRTENLYILPASQTRD-KDALTREGVAKVLDDLKAMDFEFIVCDSPAGIETGALMALYFADEAIITTNPEVSSVRDSDR 155 (270)
T ss_pred -CCCCCEEEECCCCHHH-HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHH
T ss_conf -8769979979996476-75545999999999777659989998899986689999998589689973897889987999
Q ss_pred HHHHHHHCC------CCCCCCEEEEECCCCCC---CCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC
Q ss_conf 999999819------87675389995658987---520059999998489537990687999999884796189888999
Q gi|254780725|r 317 LIDVLKKLR------PADKPPYLVLNQVKTPK---KPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS 387 (427)
Q Consensus 317 ll~~l~~~~------~~~~~~~iVlNr~~~~~---~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s 387 (427)
+++.+.... ...-..++++|++++.+ ...+..+++++.++.+..+.||+|+++ .+|.+.|+|++ ++|+|
T Consensus 156 ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~IP~d~~v-~eA~~~G~Pvv-~~p~s 233 (270)
T PRK10818 156 ILGILASKSRRAENGEEPIKEHLLLTRYNPGRVSRGDMLSMEDVLEILRIKLVGVIPEDQSV-LRASNQGEPVI-LDINA 233 (270)
T ss_pred HHHHHHHHHHHHHCCCCCHHCCEEEEEECHHHCCHHHHCCHHHHHHHCCCEEEEECCCCHHH-HHHCCCCCCEE-ECCCC
T ss_conf 99999987776533520100125884245312321100129999973288069980797469-88522799879-89999
Q ss_pred HHHHHHHHHHHHHHCCCCCC-CCCCCHHHHHHHHHH
Q ss_conf 89999999999985221223-211105899998742
Q gi|254780725|r 388 AIANLLVDFSRVLMGRVTVS-KPQSAMYTKIKKIFN 422 (427)
Q Consensus 388 ~~a~~~~~La~~i~gr~~~~-~~k~~~~~~l~~lf~ 422 (427)
+.+++|.+||+++.|+..+. ...+++.++|+|+||
T Consensus 234 ~~a~Ay~~lA~~ll~~~~p~~~~~~~~~~~~~~~fg 269 (270)
T PRK10818 234 DAGKAYADTVERLLGEERPFRFIEEEKKGFLKRLFG 269 (270)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCC
T ss_conf 899999999999956877765544332348887008
No 5
>TIGR01969 minD_arch cell division ATPase MinD; InterPro: IPR010224 Proper placement of the bacterial cell division site requires the site-specific inactivation of other potential division sites. In Escherichia coli, selection of the correct mid-cell site is mediated by the MinC, MinD and MinE proteins. Several members of this family are found in archaeal genomes but their function is uncharacterised. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. This entry represents the archaeal MinD family. The exact roles of the various archaeal MinD homologs are unknown. .
Probab=100.00 E-value=0 Score=301.37 Aligned_cols=231 Identities=19% Similarity=0.259 Sum_probs=216.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 3799974698877568999999999962699499997879898603343899-878988863184561243376532024
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKD-PINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~-~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
|+|+|.|+|||+||||+++|||.+||+ .|++|+++|.|..+.|+.+.||++ -+.||+|+|.+--+ ++.++..+
T Consensus 1 r~I~iASGKGGtGKTT~tANLgVALA~-~Gk~V~~~DADI~MANL~LiLgmE~~~VTLhDVLAGeA~-----i~DAIY~g 74 (258)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAK-LGKKVLVLDADITMANLELILGMEDKPVTLHDVLAGEAD-----IKDAIYEG 74 (258)
T ss_pred CEEEEEECCCCCCHHHEEEHHHHHHHH-CCCEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCCCCCC-----HHHHCCCC
T ss_conf 988999778898614000007788986-097689994676677689884468889675221344561-----00110028
Q ss_pred CCC-EEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 898-0687248761203207999999989998512888997388888989999986201254357877688999999999
Q gi|254780725|r 241 AEN-LSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 241 ~~g-L~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
+.| ++++|++-+++..---.++.+..++..+.+.|||++||+|.+....+..+|..||+.++|++|+.+|+.++-++.-
T Consensus 75 p~GnV~V~PagvSLEg~rKA~~~~L~dV~~~i~~~~D~lLIDAPAGL~~~a~~Al~~a~elLLVvNPEi~SItDaLK~k~ 154 (258)
T TIGR01969 75 PEGNVKVIPAGVSLEGLRKADPDKLEDVLKEIIDDTDFLLIDAPAGLERDAVTALAAADELLLVVNPEISSITDALKVKI 154 (258)
T ss_pred CCCCEEEECCCCCHHHCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHH
T ss_conf 89844785061221000126833328999987204377887478983378999998618664866765446777889999
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 99981987675389995658987520059999998489537990687999999884796189888999899999999999
Q gi|254780725|r 320 VLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRV 399 (427)
Q Consensus 320 ~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~ 399 (427)
..++++ -..+++|+||+... ..+++.++++..|+.++.++||.||+. ++|...|.|++...|+||+|++|.+||+.
T Consensus 155 va~~lG--t~ilG~vlNRv~~~-~tel~~~eiE~iLevPVl~~vPEDP~V-R~AAa~G~P~V~~~P~SpAA~A~~eLA~~ 230 (258)
T TIGR01969 155 VAEKLG--TAILGVVLNRVTRD-KTELGREEIEAILEVPVLGVVPEDPEV-RRAAAFGEPVVVYSPNSPAAQAFMELAAE 230 (258)
T ss_pred HHHHCC--CCEEEEEEEECCCC-CCCCCHHHHHHHHCCCEEEEECCCHHH-HHHHHCCCCEEEECCCCHHHHHHHHHHHH
T ss_conf 987608--83246899602366-663788899988479738985698434-45642485368847998789999999999
Q ss_pred HHC
Q ss_conf 852
Q gi|254780725|r 400 LMG 402 (427)
Q Consensus 400 i~g 402 (427)
|.|
T Consensus 231 l~G 233 (258)
T TIGR01969 231 LAG 233 (258)
T ss_pred HHC
T ss_conf 718
No 6
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PMID:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=100.00 E-value=3.1e-40 Score=266.55 Aligned_cols=234 Identities=18% Similarity=0.193 Sum_probs=190.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC--CCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 37999746988775689999999999626994999978798986033438998--7898886318456124337653202
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDP--INSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~--~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
|+|+|.+.||||||||+|+|||++||+ .|++|++||+|+| |++..+||.++ ..++.+.+..... ++....+
T Consensus 2 kiIav~n~KGGVGKTT~avNLA~~La~-~G~rVLlIDlDpQ-~~l~~~~g~~~~~~~~l~~~~~~~~~-----~~~~~~~ 74 (246)
T TIGR03371 2 KVIAIVGIKGGVGRTTLTAALASALKL-LGEPVLAIDLDPQ-NLLRLHFGMDWSVRDGWARALLAGED-----WRAAAYR 74 (246)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCHHHHCCCCCCCCCCHHHHHHCCCC-----HHHHHEE
T ss_conf 399997599985499999999999996-8997899975999-85032248887534569999827998-----8895255
Q ss_pred CCCCEEEEECCCC-CC---CHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 4898068724876-12---032079999999899985-128889973888889899999862012543578776889999
Q gi|254780725|r 240 YAENLSILTAPAM-LS---RTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNS 314 (427)
Q Consensus 240 ~~~gL~lL~a~~~-~~---~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a 314 (427)
+.+|+++++++.. .. .........+..++..++ ..||||||||||+++..+.++|.+||.+++|++|+..++...
T Consensus 75 ~~~~~~~ip~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~D~viiD~pp~l~~~~~~al~aad~vlipv~~~~~s~~~~ 154 (246)
T TIGR03371 75 SSDGVLFLPYGTLSADEREAYQAHDAGWLARLLQQLDLAARDWVLIDLPRGPSPITDQALAAADLVLVVVNADAACYATL 154 (246)
T ss_pred CCCCEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHH
T ss_conf 78982897089847778987604478999999986303679889994899874999999998894799818998999999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCHH-HHHHHHHHHCCCEE-EEECCCHHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 99999999819876753899956589875200-59999998489537-99068799999988479618988899989999
Q gi|254780725|r 315 KNLIDVLKKLRPADKPPYLVLNQVKTPKKPEI-SISDFCAPLGITPS-AIIPFDGAVFGMSANSGKMIHEVDPKSAIANL 392 (427)
Q Consensus 315 ~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i-~~~~~~~~lg~~~~-~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~ 392 (427)
.+++..+.+...+...+++|+||++..+.... ..+.+++.++.++. ..||+|.+ +.+|...|+|+.+++|+|+.+++
T Consensus 155 ~~~~~~~~~~~~~~~~~~iv~n~~~~~~~~~~~~~~~l~~~~~~~~~~~~I~~~~~-v~eA~~~g~pv~~~~p~S~aa~~ 233 (246)
T TIGR03371 155 HQLALALLARSVPPDGIHYLINQFQPARQLSRDVRAVLRATLGSRLLPMFVHRDEA-VAEALARGTPVFNYAPHSQAAHD 233 (246)
T ss_pred HHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHH-HHHHHHCCCCCEEECCCCHHHHH
T ss_conf 99999999842776751788630264015899999999997498816226899779-99999769982669958989999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998522
Q gi|254780725|r 393 LVDFSRVLMGR 403 (427)
Q Consensus 393 ~~~La~~i~gr 403 (427)
|++||++|..|
T Consensus 234 y~~LA~~ll~~ 244 (246)
T TIGR03371 234 IRTLAFWLLTK 244 (246)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999996
No 7
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=100.00 E-value=3.6e-39 Score=260.00 Aligned_cols=258 Identities=21% Similarity=0.301 Sum_probs=222.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCC-HHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 537999746988775689999999999626994999978798986033438998789-8886318456124337653202
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINS-ISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~-l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
.++|+|.|+||||||||+++|++..+++..+++|+++|+|+.+++++..||+++..+ +.+++.+..++.+ ....
T Consensus 2 ~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~D-----i~~~ 76 (262)
T COG0455 2 TKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIED-----IIYE 76 (262)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHCCCCHHH-----EEEE
T ss_conf 78999984588756898998699999964897699996588887288885888885509999707787768-----0231
Q ss_pred CC-CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 48-98068724876120320799999998999851288899738888898999998620125435787768899999999
Q gi|254780725|r 240 YA-ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLI 318 (427)
Q Consensus 240 ~~-~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll 318 (427)
.+ .|++++|+...+.....+.++.+..++..+...||||++|+|++.+..+...+..+|.+++|++|+..++.++..++
T Consensus 77 ~~~~gl~vipg~~~~~~~~~~~~~~~~~~~~~l~~~~D~iliD~~aGl~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i 156 (262)
T COG0455 77 TPQDGLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILIDTGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTI 156 (262)
T ss_pred CCCCCEEEEECCCCHHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHH
T ss_conf 57689899607887688861698889999999875299999968999668889998736817999279852089999999
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCC-HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Q ss_conf 99998198767538999565898752-00599999984895379906879999998847961898889998999999999
Q gi|254780725|r 319 DVLKKLRPADKPPYLVLNQVKTPKKP-EISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFS 397 (427)
Q Consensus 319 ~~l~~~~~~~~~~~iVlNr~~~~~~~-~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La 397 (427)
+++...........+|+|+++..+.. +...+..+..........+|+|+ .+.++...|.|+....|+|+++++|.+||
T Consensus 157 ~~~~~~~~~~~~~~vV~N~v~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~-~v~~a~~~g~p~~~~~p~s~as~ai~~lA 235 (262)
T COG0455 157 KILSKLGLDLLGRRVVLNRVRSTKEGVDVAALLIQVVKQVPVLQVIPFDP-EVRRALAEGKPIVLYSPNSKASQAIKELA 235 (262)
T ss_pred HHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCH-HHHHHHHCCCCEEEECCCCHHHHHHHHHH
T ss_conf 99997387643315899703666654678999999997077434715675-78998624986797288978999999999
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 998522122321110589999874234
Q gi|254780725|r 398 RVLMGRVTVSKPQSAMYTKIKKIFNMK 424 (427)
Q Consensus 398 ~~i~gr~~~~~~k~~~~~~l~~lf~rk 424 (427)
..+.+......++.+..++++++|+++
T Consensus 236 ~~l~~~~~~~~~~~~~~~~~~~~~~~~ 262 (262)
T COG0455 236 AKLAGLPEPKAPRRGFISKIKRLLKRR 262 (262)
T ss_pred HHHHCCCCCCCCCCCHHHHHHHHHCCC
T ss_conf 998605566774311279999885069
No 8
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=100.00 E-value=1.2e-37 Score=250.71 Aligned_cols=256 Identities=16% Similarity=0.190 Sum_probs=197.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|+||| ++||||||||+++|||.+||+ .|+||+++|+|+|.++++.++|..+.+++.|.+.....+++..++..+....
T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~-~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~ 78 (269)
T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAE-MGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGY 78 (269)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCC
T ss_conf 95899-899976889999999999998-7990999845899874144438988884787760467702240745013377
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCCH--HH-HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032079999999899985-----1288899738888898--99-99986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILE-----QIFPLVILDVPHVWNS--WT-QEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-----~~yd~VIiD~p~~~~~--~~-~~~L~~AD~vviV~~p~~~slr~ 313 (427)
.++.++++....... ......+...++.++ ..|||+++|+++.... .. ......||.+++|++|+..++.+
T Consensus 79 ~gv~~i~~~~~e~~~-~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~~A~~viiv~t~E~~al~~ 157 (269)
T pfam00142 79 GGIRCVESGGPEPGV-GCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREGKAQEVYIVTSGEMMALYA 157 (269)
T ss_pred CCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHCCCCEEEEEECCCHHHHHH
T ss_conf 872688689986563-2110789999999998210212888985336740243400533443588799982894789999
Q ss_pred HHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 999999999819--876753899956589875200599999984895379906879999998847961898889998999
Q gi|254780725|r 314 SKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIAN 391 (427)
Q Consensus 314 a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~ 391 (427)
+.++++.+.+.. .+-....+|+|+.... ...-..+++.+.++.++...||.|.. +.+|...|+|+.+++|+|+.++
T Consensus 158 a~~l~~~i~~~~~~~~~~i~giv~n~~~~~-~~~~~~~~~~~~~~~~~lg~IP~d~~-v~eA~~~g~pv~~~~P~S~~A~ 235 (269)
T pfam00142 158 ANNICKGILKYAKSGGVRLGGLICNSRKVD-DERELIDAFAEALGTQMIHFVPRDNI-VQKAELNKQTVIEYAPTCNQAK 235 (269)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHCCCEEEECCCCHH-HHHHHHCCCCEEEECCCCHHHH
T ss_conf 999999999985057962789982686541-15799999999819947997799826-8754234981799899998999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999985221223211105899998742
Q gi|254780725|r 392 LLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 392 ~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
+|.+||++|..+.+...|++-...-|.+++.
T Consensus 236 ay~~LA~~il~~~~~~~p~p~~~~~~~~~~~ 266 (269)
T pfam00142 236 EYRELARKIIENPEGIIPTPLTMDELEELLV 266 (269)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999998589998888699889999999
No 9
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.1e-38 Score=257.03 Aligned_cols=257 Identities=20% Similarity=0.301 Sum_probs=222.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 75379997469887756899999999996269949999787989860334389987--8988863184561243376532
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~~~l 237 (427)
.+++|.|.|.||||||||.++|++.+||. .|++|++||+|...-++.+.+|++.. +.+.+++....++.+++++.
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkD-- 77 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKD-- 77 (272)
T ss_pred CCEEEEEECCCCCCCCCCHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHHCCCCEEEEEEHHHHCCCCCHHHHHHCC--
T ss_conf 96499994488876743106778999997-398599996676720446664342015654013444766365676403--
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02489806872487612032079999999899985-12888997388888989999986201254357877688999999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
+..++|++||+..+-+. ..++++.+..+++.|+ ..||||++|+|.+.......++..||..++|++|+++|+|++.|
T Consensus 78 -Kr~~nL~lLPAsQtrdK-dalt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G~~~A~~~Ad~AiVVtnPEvSsVRDsDR 155 (272)
T COG2894 78 -KRLENLFLLPASQTRDK-DALTPEGVKKVVNELKAMDFDYIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDR 155 (272)
T ss_pred -CCCCCEEECCCCCCCCC-CCCCHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCHH
T ss_conf -56785266144323672-2279999999999997669988996484067788886541026379974887554234112
Q ss_pred HHHHHHHCC----C-CCCCCEEEEECCCCC---CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCH
Q ss_conf 999999819----8-767538999565898---75200599999984895379906879999998847961898889998
Q gi|254780725|r 317 LIDVLKKLR----P-ADKPPYLVLNQVKTP---KKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSA 388 (427)
Q Consensus 317 ll~~l~~~~----~-~~~~~~iVlNr~~~~---~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~ 388 (427)
++-.|.... . ...+.++++||+++. +..-++.+|+.+.|..++.++||.|... -.|.|.|.|+.. .+++.
T Consensus 156 iiGlLesk~~rae~~~~~~~~llvnR~~p~~v~~GeMlsv~Dv~~iL~i~liGiiPed~~V-i~asN~GePv~l-~~~~~ 233 (272)
T COG2894 156 IIGLLESKSRRAEIGEEPKEHLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDV-LRASNKGEPVIL-DDNSD 233 (272)
T ss_pred HEEEHHCCCCHHHCCCCCCCEEEEECCCHHHHCCCCCCCHHHHHHHHCCCEEEEECCCHHH-EEECCCCCCEEE-CCCCH
T ss_conf 2020121454233077666348997168888115772539999997477447760485333-000478887675-78751
Q ss_pred HHHHHHHHHHHHHCCCCCC----CCCCCHHHHHHHHHHH
Q ss_conf 9999999999985221223----2111058999987423
Q gi|254780725|r 389 IANLLVDFSRVLMGRVTVS----KPQSAMYTKIKKIFNM 423 (427)
Q Consensus 389 ~a~~~~~La~~i~gr~~~~----~~k~~~~~~l~~lf~r 423 (427)
++++|..++++|.|...+- .++++++++++++|++
T Consensus 234 a~~Ay~d~arRllGe~vp~~~~~~~kkg~~~~l~~~~~~ 272 (272)
T COG2894 234 AGKAYRDIARRLLGEEVPFRFLEEEKKGFLARLKGGFSG 272 (272)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 779999999997088866322134441299998655259
No 10
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=100.00 E-value=1.3e-37 Score=250.44 Aligned_cols=257 Identities=17% Similarity=0.211 Sum_probs=192.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|+|||.| ||||||||+++|||.+||+ .|++|+++|+|+|.+++..+++..+.+++.+.+....... ..++..+....
T Consensus 2 r~Iai~G-KGGVGKTTtavNLA~aLa~-~GkkVlliDaDpq~~~t~~l~g~~~~~~~~~~l~~~~~~~-~~~~~~i~~~~ 78 (270)
T cd02040 2 RQIAIYG-KGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVE-LELEDVIFEGF 78 (270)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCCCC-CCHHHHEECCC
T ss_conf 5899979-9857789999999999998-7994999865799851346529988882899887527776-53889613376
Q ss_pred CCEEEEECCCCCCCHH-----CCCHHHHHHHHHHHHHCCCEEEECCCCCCC--HHHHH-HHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032-----079999999899985128889973888889--89999-986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTY-----DFDEKMIVPVLDILEQIFPLVILDVPHVWN--SWTQE-VLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~-----~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~--~~~~~-~L~~AD~vviV~~p~~~slr~ 313 (427)
+|+.++++........ .+....+...+..+...||||++|+..... ..+.. ....||.+++|++|++.++.+
T Consensus 79 ~gv~~ip~~~~~~~~~~~gr~~~~~~~ll~~l~~~~~~~D~iliD~lg~~~~~~~~~~i~~~~ad~viiv~t~e~~al~~ 158 (270)
T cd02040 79 GGIKCVESGGPEPGVGCAGRGVITAINLLEELGAYEDDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYA 158 (270)
T ss_pred CCCEEEECCCCCCCCHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCHHHHCCCCEEEEECCCCHHHHHH
T ss_conf 77064105996435121240078899999985434406988998235633321232303553388799962881899999
Q ss_pred HHHHHHHHHHCCCC-CCCCE-EEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 99999999981987-67538-99956589875200599999984895379906879999998847961898889998999
Q gi|254780725|r 314 SKNLIDVLKKLRPA-DKPPY-LVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIAN 391 (427)
Q Consensus 314 a~~ll~~l~~~~~~-~~~~~-iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~ 391 (427)
+.++++.+...... ..++. +|.|+... ....-..++|++.++.++...||+|.. +.+|..+|+|+.+++|+|+.++
T Consensus 159 ~~~l~k~i~~~~~~~~~~l~gvv~~~~~~-~~~~~~~~~~~~~~~~~~l~~IP~d~~-v~EA~~~g~pi~~~~P~S~~A~ 236 (270)
T cd02040 159 ANNICKGILKYAKSGGVRLGGLICNSRNT-DREDELIDAFAKRLGTQMIHFVPRDNV-VQRAELRGKTVIEYDPESKQAD 236 (270)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCC-CHHHHHHHHHHHHHCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCHHHH
T ss_conf 99999999999834697479998378665-137899999999859952877799717-8751342970799798998999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999852212232111058999987423
Q gi|254780725|r 392 LLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 392 ~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
+|.+||++|..+..+..|++---..|.++|+.
T Consensus 237 ay~~LA~eii~~~~~~~p~p~~~~~~~~~~~~ 268 (270)
T cd02040 237 EYRELARKIVENKLLVIPTPLEMDELEELLME 268 (270)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 99999999984899989888997899999996
No 11
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=100.00 E-value=8.5e-36 Score=239.27 Aligned_cols=176 Identities=22% Similarity=0.325 Sum_probs=151.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 79997469887756899999999996269949999787989860334389987--8988863184561243376532024
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
||+|+|+||||||||+|+|||++||+ .|++|++||+|+++++++..++.+.. +++.|
T Consensus 1 iIav~s~KGGVGKTT~a~NLA~aLa~-~g~~vllvD~D~~~~~l~~~~~~~~~~~~~~~~-------------------- 59 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRNLDLILGLENRVVYTLHD-------------------- 59 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHCCCCCCCCCHHHC--------------------
T ss_conf 98997399987099999999999997-799189995899999836661765566531311--------------------
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89806872487612032079999999899985128889973888889899999862012543578776889999999999
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
++++ ||||+|+|++++..+..++..||.+++|++|+..+++++.++++.
T Consensus 60 -----vl~g--------------------------D~viiD~ppg~~~~~~~~l~~ad~vlvv~~p~~~sl~~~~~~~~~ 108 (179)
T cd02036 60 -----VLAG--------------------------DYILIDSPAGIERGFITAIAPADEALLVTTPEISSLRDADRVKGL 108 (179)
T ss_pred -----CCCC--------------------------CEEEEECCCCCCHHHHHHHHHCCCCEECCCCCHHHHHHHHHHHHH
T ss_conf -----2669--------------------------999997999988899999984681256378858899999999999
Q ss_pred HHHCCCCCCCCEEEEECCCCCC-CCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHH
Q ss_conf 9981987675389995658987-520059999998489537990687999999884796189888999899999
Q gi|254780725|r 321 LKKLRPADKPPYLVLNQVKTPK-KPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLL 393 (427)
Q Consensus 321 l~~~~~~~~~~~iVlNr~~~~~-~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~ 393 (427)
+++.+. ..+++|+||++... ......+++++.+|.++.+.||+|.. +.+|.++|+|+.+++|+|+.+++|
T Consensus 109 ~~~~~~--~~~~vv~Nr~~~~~~~~~~~~~~~~~~l~~~vlg~IP~d~~-v~eA~~~g~Pv~~~~P~s~aA~ay 179 (179)
T cd02036 109 LEALGI--KVVGVIVNRVRPDMVEGGDMVEDIEEILGVPLLGVIPEDPA-VIRATNRGEPVVLNKPKSPAAQAY 179 (179)
T ss_pred HHHCCC--CEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCHHHHCC
T ss_conf 982599--64699984546766636779999998559967988779889-999876795389879999566309
No 12
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=4.3e-35 Score=234.91 Aligned_cols=259 Identities=15% Similarity=0.194 Sum_probs=200.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
.|.|||+| |||+||||+++|||.+||+..|++|++||+|++..++.+.++..+..++.|.+..... +...++..+...
T Consensus 2 ~~~iaiyG-KGGIGKSTTt~NLaaALA~l~GkrVl~IgcDPk~dST~~l~g~~~~~tv~d~l~~~~~-~~~~~e~ii~~g 79 (275)
T PRK13233 2 TRKIAIYG-KGGIGKSTTTQNTAAAMAHFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGE-EKVTPDKVIKTG 79 (275)
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCCCCCHHHHHHHCCC-CCCCHHHHHHCC
T ss_conf 73899989-9854465459999999996479889997978876136776089878839999986288-755388887537
Q ss_pred CCCEEEEECCCCCC-----CHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC--HHHHHH-HHHCCCCCCCCCCCHHHHH
Q ss_conf 89806872487612-----032079999999899985128889973888889--899999-8620125435787768899
Q gi|254780725|r 241 AENLSILTAPAMLS-----RTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN--SWTQEV-LTLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 241 ~~gL~lL~a~~~~~-----~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~--~~~~~~-L~~AD~vviV~~p~~~slr 312 (427)
..|+.++.++.... ....+....+..-++.....||||++|++.... ..+..+ ...||+|++|+++++.|+.
T Consensus 80 ~~gv~cVEaGgp~pG~gcagrgii~~~~lle~~~~~~~~~D~Vl~DvLGdVvcGgFa~Pir~~~AdeV~IVts~E~msL~ 159 (275)
T PRK13233 80 FKGIRCVESGGPEPGVGCAGRGVITAITLMEEHGAYEDDLDFVFFDVLGDVVCGGFAMPIRDGKAQEVYIVASGEMMALY 159 (275)
T ss_pred CCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
T ss_conf 89857986899986665576312358888998097434688899841561105551034313668889999468379999
Q ss_pred HHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999999981--987675389995658987520059999998489537990687999999884796189888999899
Q gi|254780725|r 313 NSKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 313 ~a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
.+.++.+.+.+. +.+.+-..+|+|+.+.+. .+...++|++.++.++...||+|.. +.+|..+|++++|++|.|+.+
T Consensus 160 aannI~~~l~~~~~~~~~~l~Gii~N~r~~~~-e~~~v~~fa~~ig~~vi~~IPr~~~-V~~Ae~~~~tVie~~P~S~~A 237 (275)
T PRK13233 160 AANNICKGLVKYAEQSGVRLGGIICNSRNVDG-ELELLEEFTDAIGTQLIHFVPRDNI-VQKAEFNKKTVVEFDPTCNQA 237 (275)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-HHHHHHHHHHHHCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCHHH
T ss_conf 99999999999850589638999971788860-7999999999859957997789778-887787397679989999799
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 999999999852212232111058999987423
Q gi|254780725|r 391 NLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 391 ~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
++|++||+.|........|++-....|+.+..+
T Consensus 238 ~~Y~~LAk~I~~n~~~~~P~pl~~~el~~~~~~ 270 (275)
T PRK13233 238 HEYKELARKIIENKNFVIPKPMTMDELEEMVVK 270 (275)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999999985899978888998999999998
No 13
>pfam06564 YhjQ YhjQ protein. This family consists of several bacterial YhjQ proteins. The function of this family is unknown. However, the family does contain a P-loop sequence motif suggesting a nucleotide binding function.
Probab=100.00 E-value=1.8e-35 Score=237.19 Aligned_cols=225 Identities=15% Similarity=0.226 Sum_probs=167.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC--CCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 37999746988775689999999999626994999978798986033438998--7898886318456124337653202
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDP--INSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~--~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
|||+|.|.||||||||+++|||++|++ .|++|++||+|+| +.+.+.||.+. ..++...+..... ++....+
T Consensus 2 kiIai~s~KGGVGKTT~t~nLa~aLa~-~G~rVLlID~Dpq-~~l~~~~g~~~~~~~g~~~~~l~~~~-----~~~~~~~ 74 (244)
T pfam06564 2 AVLALQGVRGGVGTTSLTAALGWALQQ-LGESVLVIDASPD-NLLRLHFNVDFDHSDGWARAELDGRP-----WRDAALR 74 (244)
T ss_pred EEEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC-CCCCCCCCCCCCCCCCHHHHHHCCCC-----HHHHHEE
T ss_conf 299996699986199999999999997-7995899968987-42102358886434414899875997-----7774445
Q ss_pred CCCCEEEEECCCCC-CCHHCC-----CHHHHHHHHHHHH--HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 48980687248761-203207-----9999999899985--128889973888889899999862012543578776889
Q gi|254780725|r 240 YAENLSILTAPAML-SRTYDF-----DEKMIVPVLDILE--QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGL 311 (427)
Q Consensus 240 ~~~gL~lL~a~~~~-~~~~~~-----~~~~l~~ll~~l~--~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~sl 311 (427)
..+|++++|.+... ...+.+ ....+...+..+. ..||||+||||++.+..+.+++..||.+++|++||..+.
T Consensus 75 ~~~gl~llP~g~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iliD~Pp~l~~l~~~al~aad~vLv~v~~d~~s~ 154 (244)
T pfam06564 75 YTPGLDLLPFGQLTGAERENLQQLQPDLGAWAQRLQLLKASGQYRWILLDLPQGFSPLTRQLLELADVTLAVVHADANCH 154 (244)
T ss_pred ECCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCCHHHH
T ss_conf 26975897289974789998986544379999987642135789999997999968999999997696089968885899
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH-HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999999981987675389995658987520059-999998489537990687999999884796189888999899
Q gi|254780725|r 312 RNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISI-SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 312 r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~-~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
.. +.+ +.......+++||+++.++..... ..+.+.++......||.|.. +.+|...|+|+.+++|+|+.+
T Consensus 155 ~~-------l~~-~~~~~~~~ilvn~~d~~~~l~~d~~~~~~~~~~~~l~~~I~rd~~-l~EA~a~g~pv~~yaP~S~aA 225 (244)
T pfam06564 155 IR-------LHQ-QALPAGCHLLINDFRIGSQLQDDLYQLWLQSQRRLLPIVVHRDEA-MAEALAAKQPLGEYRPDSLAA 225 (244)
T ss_pred HH-------HHH-CCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEECCCCH-HHHHHHCCCCHHHCCCCCHHH
T ss_conf 99-------732-334467748864245576899999999998608725755079882-989986799554538699899
Q ss_pred HHHHHHHHHHHC
Q ss_conf 999999999852
Q gi|254780725|r 391 NLLVDFSRVLMG 402 (427)
Q Consensus 391 ~~~~~La~~i~g 402 (427)
++|..||.++.-
T Consensus 226 ~dy~~LA~w~l~ 237 (244)
T pfam06564 226 EEVLTLANWCLL 237 (244)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999998
No 14
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=5.8e-35 Score=234.15 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=194.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|-|+|+| ||||||||+++|||.+||+ .|+||++||+|++..++..+++..+.+++.|.+..... +..-++..+.+..
T Consensus 2 ~~iaiyG-KGGVGKSTTt~NLaAALA~-~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~-~~~~l~~v~~~g~ 78 (273)
T PRK13232 2 RQIAIYG-KGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGD-EGVDLDVVMQPGF 78 (273)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCC-CCCCHHHEEECCC
T ss_conf 5799979-9866588789999999997-79969998978844277788589988879999986185-6563666154288
Q ss_pred CCEEEEECCCCCCCH-----HCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH---HHHHCCCCCCCCCCCHHHHHH
Q ss_conf 980687248761203-----207999999989998512888997388888989999---986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRT-----YDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQE---VLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~-----~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~---~L~~AD~vviV~~p~~~slr~ 313 (427)
.++.++.+....... ..+..-.+..-+......||||++|++......... ....|+++++|+++++.++..
T Consensus 79 ~gv~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~P~~~~~A~evlIVts~E~~slya 158 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYA 158 (273)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 97389868998767654530478888899970832147988999414733236531442016576899980760888999
Q ss_pred HHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 9999999998198-767538999565898752005999999848953799068799999988479618988899989999
Q gi|254780725|r 314 SKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANL 392 (427)
Q Consensus 314 a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~ 392 (427)
+.++++.+++... ..+--.+|+|+.+.... +.-.++|++.++.++...||+|..+ .+|..+|+|+++++|+|+.+++
T Consensus 159 annI~k~i~~~~~~~~rl~GiI~n~r~~~~~-~e~v~~fa~~~g~~vi~~IPr~~~v-~~A~~~g~tvie~~P~S~~A~a 236 (273)
T PRK13232 159 ANNICKGLAKFAKGGARLGGIICNSRNVDGE-RELLEAFAKKLGSQLIHFVPRDNIV-QRAEINRKTVIDFDPESNQAKE 236 (273)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCHHH-HHHHHCCCEEEEECCCCHHHHH
T ss_conf 9999999999962188501488505577638-9999999997199669978997788-7648729835897999979999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999852212232111058999987423
Q gi|254780725|r 393 LVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 393 ~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
|.+||+.|..+.....|++-....|..|+.+
T Consensus 237 Y~~LA~~I~~~~~~~~P~pl~~~el~~~~~~ 267 (273)
T PRK13232 237 YLTLAHNVQNNDKLVVPTPLPMEELEAMMVE 267 (273)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999985899877887998999999998
No 15
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=100.00 E-value=1.6e-34 Score=231.37 Aligned_cols=256 Identities=14% Similarity=0.130 Sum_probs=193.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|.|||+| ||||||||+++|||.+||+ .|++|++||+|++..++...+|..+..++.|.+.... +...++..+.+..
T Consensus 2 ~~iaiyG-KGGVGKSTtt~NLaAALA~-~GkkVl~IgcDPk~dsT~~L~gg~~~~tvld~l~~~~--~~~~ledvi~~g~ 77 (274)
T PRK13235 2 RKVAIYG-KGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLQQKTVLDTLREEG--EDVELEDIIKEGY 77 (274)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHCCCCCCCHHHHHHHCC--CCCCHHHHEEECC
T ss_conf 6799979-9855476789999999997-8997999898984536678738998997899998628--7767789443178
Q ss_pred CCEEEEECCCCC-C-CHHCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCCHHHHHH---HHHCCCCCCCCCCCHHHH
Q ss_conf 980687248761-2-032079999999899985-----128889973888889899999---862012543578776889
Q gi|254780725|r 242 ENLSILTAPAML-S-RTYDFDEKMIVPVLDILE-----QIFPLVILDVPHVWNSWTQEV---LTLSDKVVITTSLDLAGL 311 (427)
Q Consensus 242 ~gL~lL~a~~~~-~-~~~~~~~~~l~~ll~~l~-----~~yd~VIiD~p~~~~~~~~~~---L~~AD~vviV~~p~~~sl 311 (427)
.++.+..++... . ....-..-....+++.+. ..||||++|++.........+ ...||+|++|+++++.||
T Consensus 78 ~gi~cveaggp~pg~gcagrgii~~~~~L~~l~~~~~~~~~DyVl~DvLGdvvcggFa~pir~~~A~eV~IVts~E~~AL 157 (274)
T PRK13235 78 GNTRCTESGGPEPGVGCAGRGIITSVNLLEQLGAYDDEWNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMAM 157 (274)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
T ss_conf 98189868998756675763152589999881775433577689981378531245115510065878999916836899
Q ss_pred HHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 99999999999819--8767538999565898752005999999848953799068799999988479618988899989
Q gi|254780725|r 312 RNSKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAI 389 (427)
Q Consensus 312 r~a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~ 389 (427)
..+.++++.+++.+ ...+-..+|+|+.+.... .-..++|++.++.++.+.||+|.. +.+|..+|+++++++|+|+.
T Consensus 158 ~aannI~k~i~~~~~~~~~~l~Gii~N~r~~~~~-~~~v~~fa~~~g~~vi~~IPr~~~-V~~Ae~~~~tVie~~P~S~~ 235 (274)
T PRK13235 158 YAANNICKGILKYADAGGVRLGGLICNSRKVDNE-REMIEELARKLGTQMIHFVPRDNM-VQRAEINRKTVIDYDPTHGQ 235 (274)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCHH
T ss_conf 9999999999999743795488999736778757-899999999749936997589458-89998739778997899879
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999852212232111058999987423
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
+++|++||++|........|++-....|.+|+..
T Consensus 236 A~~Yr~LA~~I~~n~~~~~p~pl~~~el~~l~~~ 269 (274)
T PRK13235 236 ADEYRALARKIDENEMFVIPKPLEIEELESLLIE 269 (274)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999983899867885998999999998
No 16
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=2.5e-33 Score=224.04 Aligned_cols=255 Identities=18% Similarity=0.199 Sum_probs=177.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHH---------
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433---------
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAF--------- 232 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~--------- 232 (427)
|.|||+| ||||||||+|+|||.+||. .|++|++||+|+|..++.-+.+-....++.|.+.... +|...
T Consensus 2 ~~ia~yG-KGGVGKTTTavNLAaALA~-~GkkVLlID~DPqgnaTs~L~~g~~~~tv~d~~~~~~-~~~~~l~~~~~~~~ 78 (292)
T PRK13230 2 KQIAFYG-KGGIGKSTTVCNLAAALSK-SGKKVIVVGCDPKHDCTSNLRGGEDIPTVLDVLREKG-IDKLGIETIIRENL 78 (292)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CCCCCHHHHCCCCC
T ss_conf 6799917-9985789899999999998-7995999776797754253015987752999998617-54222333203244
Q ss_pred --HHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-------CCCEEEECCCCCCCH---HHHHHHHHCCCC
Q ss_conf --76532024898068724876120320799999998999851-------288899738888898---999998620125
Q gi|254780725|r 233 --VSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-------IFPLVILDVPHVWNS---WTQEVLTLSDKV 300 (427)
Q Consensus 233 --l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-------~yd~VIiD~p~~~~~---~~~~~L~~AD~v 300 (427)
.+..+....+++.++.++...... ......+....+.+++ .|||+++|++..... .+...+..||.|
T Consensus 79 ~~~~dii~~~~~gv~~ve~g~~~~g~-g~~gr~~~~~~~ll~~~~~~~~~~~D~vl~D~lg~~~~~g~~~p~~~~~Ad~V 157 (292)
T PRK13230 79 LKKEDIIYEGFNGIYCVEAGGPKPGY-GCAGRGVIVVIDLLKKMNVFEELGVDVVLYDVLGDVVCGGFAMPLRMGLADQI 157 (292)
T ss_pred CCHHHEEECCCCCEEEEECCCCCCCC-CCCHHHHHHHHHHHHHHCCHHHHCCCEEEECCCCCCCCCCCCCCCHHCCCCEE
T ss_conf 65232222267862786168987664-11314789999999981312330876575034355664642156202018989
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC
Q ss_conf 4357877688999999999999819--87675389995658987520059999998489537990687999999884796
Q gi|254780725|r 301 VITTSLDLAGLRNSKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGK 378 (427)
Q Consensus 301 viV~~p~~~slr~a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~ 378 (427)
++|++++..+|.++.++++.+++.. .+..--.+|.|+..... ..-..++|++.++.++...||++.++ .+|...|+
T Consensus 158 lIp~q~E~~ALeg~~~l~~tI~~~~~~~~~~l~Giv~n~r~~l~-~~~vv~e~~~~fg~~v~~~IPrnv~l-~EAps~G~ 235 (292)
T PRK13230 158 YVVTSSDYMALYAANNICKGIKQFAKRGGSTLGGIIYNVRGSMD-AFDIVSEFASKLNTNIIGKVPNSNII-NEAEIDGK 235 (292)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCC-HHHHHHHHHHHHCCEEEEECCCCCHH-HHCCCCCC
T ss_conf 99727389999999999999999984579757999970898864-78999999998299159967996063-41430498
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 18988899989999999999985221223211105899998742
Q gi|254780725|r 379 MIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 379 pi~e~~p~s~~a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
|+.+++|+|+.+++|.+||++|........|+.-.-..|..||+
T Consensus 236 pvi~ydP~S~gA~aY~~LA~ei~en~~~~~p~pl~~~~l~~l~~ 279 (292)
T PRK13230 236 TAIEYAPDSEISKIYRELAEKIYENNTGTIPNPLENEQIMQIGK 279 (292)
T ss_pred CEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 24897989978999999999999679997888899899999999
No 17
>PRK11670 putative ATPase; Provisional
Probab=100.00 E-value=1.2e-32 Score=220.01 Aligned_cols=232 Identities=15% Similarity=0.144 Sum_probs=170.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
...+||+|.|+||||||||+|+|||.+||+ .|++|+++|+|+++.++..+||.+...... .|...+..
T Consensus 105 ~v~~vIAVaSGKGGVGKSTvavNLA~ALA~-~G~kVgllDADi~Gpsip~mlG~~~~~~~~--------~d~~~i~P--- 172 (369)
T PRK11670 105 GVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAKVGILDADIYGPSIPTMLGAENQRPTS--------PDGTHMAP--- 172 (369)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCCHHHCCCCCCCCC--------CCCCEECC---
T ss_conf 868899998589988899999999999996-699378982478887650230665456646--------88966376---
Q ss_pred CCCCCEEEEECCCCC--CCHH----CCCHHHHHHHH-HHHHHCCCEEEECCCCCCCHHHHHH--HHHCCCCCCCCCCCHH
Q ss_conf 248980687248761--2032----07999999989-9985128889973888889899999--8620125435787768
Q gi|254780725|r 239 FYAENLSILTAPAML--SRTY----DFDEKMIVPVL-DILEQIFPLVILDVPHVWNSWTQEV--LTLSDKVVITTSLDLA 309 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~--~~~~----~~~~~~l~~ll-~~l~~~yd~VIiD~p~~~~~~~~~~--L~~AD~vviV~~p~~~ 309 (427)
....|+.+.+..--. +... ......+.+++ +.....|||+|||+|++.++....+ ....+.+++|++|...
T Consensus 173 ~~~~gi~~~S~g~l~~~~~~~iwRgp~~~~al~q~l~~~~wg~lDyLIID~PPGtgDi~Ltl~q~v~~~gavvVTTPq~~ 252 (369)
T PRK11670 173 IMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLWPDLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDI 252 (369)
T ss_pred CCCCCEEEEECCCCCCCCCCHHHCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCHH
T ss_conf 00058125302202376640222130167999998777433788889983799875277788764576607996277376
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEECCCC--CC---C----CHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCE
Q ss_conf 8999999999999819876753899956589--87---5----2005999999848953799068799999988479618
Q gi|254780725|r 310 GLRNSKNLIDVLKKLRPADKPPYLVLNQVKT--PK---K----PEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMI 380 (427)
Q Consensus 310 slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~--~~---~----~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi 380 (427)
++.++.+.+.++++.+. ..+.+|.||... +. . +.-..+++++.++.+..+.||.|+.. .++.+.|+|+
T Consensus 253 Al~Da~k~i~m~~k~~v--pilGiVeNMs~~~c~~c~~~~~iFg~gg~e~~a~~~~v~lLG~IP~d~~I-~ea~d~G~Pv 329 (369)
T PRK11670 253 ALIDAKKGIVMFEKVEV--PVLGIVENMSMHICSNCGHHEPIFGTGGAEKLAEKYHTQLLGQMPLHISL-REDLDRGTPT 329 (369)
T ss_pred HHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHHCCCEEEECCCCHHH-HHHCCCCCCE
T ss_conf 99999999999985488--85068863633336899971001366609999998399879979898899-9618599856
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 9888999899999999999852212
Q gi|254780725|r 381 HEVDPKSAIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 381 ~e~~p~s~~a~~~~~La~~i~gr~~ 405 (427)
+...|+|+.+++|.+||++|..+-.
T Consensus 330 V~~~P~S~aA~Af~~iA~~la~~~~ 354 (369)
T PRK11670 330 VVSRPESEFTAIYRQLADRVAAQLY 354 (369)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9828999899999999999999996
No 18
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=100.00 E-value=1.7e-32 Score=218.93 Aligned_cols=251 Identities=15% Similarity=0.175 Sum_probs=189.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHCCC
Q ss_conf 7999746988775689999999999626994999978798986033438998789888631845-612433765320248
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLPVFYA 241 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~~~ 241 (427)
+|||+| |||+||||+++||+.+||+ .|++|++||+|+...++ ..|.-...+++.|.+...+ +.+...++..+.+..
T Consensus 2 kiaiyG-KGGIGKSTttaNl~aaLA~-~G~kVl~IgcDpk~Dst-~~L~g~~~~tvld~l~~~~~~~~~~~~~d~v~~g~ 78 (267)
T cd02032 2 VLAVYG-KGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKHDST-FTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY 78 (267)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCHHHH-HHHCCCCCCCHHHHHHHHCCCHHHCCHHHHHHCCC
T ss_conf 799977-9965787789999999998-79959997789951556-75269886839999986088666414778753076
Q ss_pred CCEEEEECCCCCCC--HHC-CCHHHHHHHHH--HHHHCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 98068724876120--320-79999999899--985128889973888889-8999998620125435787768899999
Q gi|254780725|r 242 ENLSILTAPAMLSR--TYD-FDEKMIVPVLD--ILEQIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNSK 315 (427)
Q Consensus 242 ~gL~lL~a~~~~~~--~~~-~~~~~l~~ll~--~l~~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a~ 315 (427)
.|+.++.++..... ... .-...+ .+++ .+.+.||||++|++...- ......+..||++++|++++..|++++.
T Consensus 79 ~gv~cvEaGgP~pg~Gcagrgi~~~~-~lL~~l~~~~~~D~Vl~DvlgdVvcgGFa~pi~~Ad~~~iVTs~e~~sl~aAn 157 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETV-KLLKELNLFEEYDVILFDVLGDVVCGGFAAPLNYADYALIVTDNDFDSIFAAN 157 (267)
T ss_pred CCCEEEECCCCCCCCCCCCCCHHHHH-HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 78457665899999887764048999-99987166434778999536654456656761006889999567187899999
Q ss_pred HHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCH----H
Q ss_conf 9999999819--876753899956589875200599999984895379906879999998847961898889998----9
Q gi|254780725|r 316 NLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSA----I 389 (427)
Q Consensus 316 ~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~----~ 389 (427)
|+...+++.. .+.+--.+|+|+.+ ..-..++|++.++.++.+.||+|.. +.+|.++|+|++|+.|.++ .
T Consensus 158 ~I~~~i~~~~~~~~~rl~GlI~Nr~~----~~~~i~~fa~~lg~~lig~VP~d~~-V~~se~~g~tvie~~p~~~~~s~~ 232 (267)
T cd02032 158 RIAAAVREKAKTYKVRLAGLIANRTD----KTDLIDKFVEAVGMPVLAVLPLIED-IRRSRVKGKTLFEMDESDEELAYR 232 (267)
T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCC----CHHHHHHHHHHHCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCCHHHHH
T ss_conf 99999999753379764227874698----5789999999729946996699338-899987398689848998437899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999985221223211105899998742
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
++.|++||+.|....+...|++-....|..||+
T Consensus 233 a~~Yr~LA~~i~~n~~~~~P~pl~~~el~~l~~ 265 (267)
T cd02032 233 CDYYLLIADQLLAGPEGVVPEPLGDREIFDLLG 265 (267)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999998399986776699899999862
No 19
>PHA02518 ParA-like protein; Provisional
Probab=100.00 E-value=9.5e-33 Score=220.52 Aligned_cols=206 Identities=15% Similarity=0.176 Sum_probs=155.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|||+|.+.||||||||+|+|||.+|++ .|++|++||+|+|. ++..++... +.
T Consensus 1 KIIav~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~-s~~~w~~~r------------~~-------------- 52 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQG-SSTDWAEAR------------EE-------------- 52 (211)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCC-CHHHHHHHC------------CC--------------
T ss_conf 989998089997499999999999997-89948999779996-788999852------------26--------------
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98068724876120320799999998999851288899738888898999998620125435787768899999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL 321 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l 321 (427)
+..+++. ... ...+..-+..+...|||||||+|+..+..+..+|..||.+++|+.|+..++..+.++++.+
T Consensus 53 -~~~~~~~-------~~~-~~~~~~~l~~~~~~yD~viID~pp~~~~~~~~al~aaD~vliP~~ps~~d~~~~~~~~~~i 123 (211)
T PHA02518 53 -GEPLIPV-------VRM-GKSIRADLPKVASGYDYVVVDGAPQDSELARAALRIADMVLIPVQPSPFDIWAAPDLVELI 123 (211)
T ss_pred -CCCCCCH-------HHC-CHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHH
T ss_conf -8997401-------213-6779999997406788899889997429999999958969996378687899999999999
Q ss_pred HH---CCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 98---198767538999565898752005999999848953799068799999988479618988899989999999999
Q gi|254780725|r 322 KK---LRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSR 398 (427)
Q Consensus 322 ~~---~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~ 398 (427)
+. .+.+.....++.|+...+.+.....++..+.++.+++-....+...+.+|...|+++.|+.|+|+.+++|..|++
T Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~v~~t~I~~r~~~~~a~~~G~~V~e~~~~~~aa~e~~~L~~ 203 (211)
T PHA02518 124 KARQEVTDGLPKFAFIISRAIKNTQLYREARKALAGYGLPILRNGTTQRVAYADAAEAGGSVLELPEDDKAAEEIIQLVK 203 (211)
T ss_pred HHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCHHEECCCCHHHHHHHHHHH
T ss_conf 99998665675168886235866569999999999869981068198878999999759976109979999999999999
Q ss_pred HHHCCC
Q ss_conf 985221
Q gi|254780725|r 399 VLMGRV 404 (427)
Q Consensus 399 ~i~gr~ 404 (427)
+|..|.
T Consensus 204 Eil~r~ 209 (211)
T PHA02518 204 ELFRGI 209 (211)
T ss_pred HHHHHH
T ss_conf 999863
No 20
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-31 Score=211.74 Aligned_cols=253 Identities=13% Similarity=0.134 Sum_probs=192.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHC
Q ss_conf 537999746988775689999999999626994999978798986033438998789888631845-6124337653202
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLPVF 239 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~ 239 (427)
+++|+|+| |||+||||+++|++.+||+ .|++|++||+|+...++-.+.| ...+++.|.+...+ +.++..++..+.+
T Consensus 2 ~~~iaiyG-KGGIGKSTttaNlsaALA~-~GkkV~~IgcDPk~DsT~~L~g-~~~~tild~l~~~~~~~~~~~~ed~~~~ 78 (269)
T PRK13185 2 ALVLAVYG-KGGIGKSTTSSNLSAALAK-LGKKVLQIGCDPKHDSTFTLTG-KLVPTVIDILEEVDFHSEELRPEDFVFE 78 (269)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHCCC-CCCCCHHHHHHHCCCCHHHCCHHHHHHC
T ss_conf 53999978-9954788899999999997-6993899818997323011259-9878789999743876021256677633
Q ss_pred CCCCEEEEECCCC-CC--CHHCCCHHHHHHHHHHH--HHCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 4898068724876-12--03207999999989998--5128889973888889-89999986201254357877688999
Q gi|254780725|r 240 YAENLSILTAPAM-LS--RTYDFDEKMIVPVLDIL--EQIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 240 ~~~gL~lL~a~~~-~~--~~~~~~~~~l~~ll~~l--~~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~ 313 (427)
...|+.++-++.. +. .....-...+ .+++.+ .+.||||++|++...- ......+..||++++|++++..+++.
T Consensus 79 G~~gv~cvEaGGP~pG~GCaGrgi~~~~-~~L~~~~~~~~~D~Vl~DvlgdVvCGGFa~Pi~~Ad~~~IVts~e~~al~a 157 (269)
T PRK13185 79 GYNGVDCVEAGGPPAGTGCGGYVVGETV-KLLKEHHLLDDYDVILFDVLGDVVCGGFAAPLQYADYALIVTANDFDSIFA 157 (269)
T ss_pred CCCCCEEEECCCCCCCCCCCCCCHHHHH-HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCHHCCCEEEEEECCHHHHHHH
T ss_conf 7677056643899998776764318999-999872874337879995367433365557510088899992530878999
Q ss_pred HHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 99999999981--9876753899956589875200599999984895379906879999998847961898889998999
Q gi|254780725|r 314 SKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIAN 391 (427)
Q Consensus 314 a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~ 391 (427)
+.|++..+.+. +.+.+--.+|+|+.+. .-..++|.+.+|.++.+.||+|. .+.+|.++|++++|..|.|+.++
T Consensus 158 AnnI~~~i~~~a~~~~~rl~GiI~Nr~~~----~d~v~~fa~~~g~~vl~~IP~~~-~V~~se~~g~TviE~~p~~~~a~ 232 (269)
T PRK13185 158 ANRIAAAIQAKAKNYKVRLAGVIANRSGG----TDQIDKFNERVGLRTLAHVPDLD-AIRRSRLKGKTLFEMEETDELEE 232 (269)
T ss_pred HHHHHHHHHHHHHCCCCCCCEEEEECCCC----HHHHHHHHHHHCCCEEEECCCCH-HHHHHHHCCCEEEEECCCCHHHH
T ss_conf 99999999865301585323257616883----77999999986997699789978-89999874986788589981789
Q ss_pred ---HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf ---9999999985221223211105899998742
Q gi|254780725|r 392 ---LLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 392 ---~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
+|++||+.|.+..++..|++-.-..|..||+
T Consensus 233 v~~~Yr~LA~~i~~~~~~~~P~pl~~~el~~l~~ 266 (269)
T PRK13185 233 VQNEYLRLADQLLAGPEPLVPKPLKDREIFDLLS 266 (269)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999999998289987888899899999974
No 21
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=100.00 E-value=1.4e-31 Score=213.30 Aligned_cols=250 Identities=20% Similarity=0.195 Sum_probs=193.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|.|+|+| |||+||||+++|||.+||. +++|++||+|+...++...+|. ..+++.|.+...... .++..+.+..
T Consensus 3 ~~iAiyG-KGGIGKSTt~~NlaaalA~--g~rVl~igcDpk~dst~~L~G~-~~ptvl~~l~~~~~~---~~~dvv~~g~ 75 (264)
T PRK13231 3 KKIAIYG-KGGIGKSTTVSNMAAAYSS--DNSTLVIGCDPKADTTRTLVGK-RIPTVLDTLKDNRQP---ELEDIIYEGY 75 (264)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHC--CCCEEEECCCCCCCHHHHHHCC-CCCCHHHHHHHCCCC---CHHHHEEECC
T ss_conf 2899978-9854788899999999987--9977998568885024676199-988388986312777---7656312178
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHH---HH---HHHHHHCCCEEEECCCCCCCHHHHH---HHHHCCCCCCCCCCCHHHHH
Q ss_conf 980687248761203207999999---98---9998512888997388888989999---98620125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIV---PV---LDILEQIFPLVILDVPHVWNSWTQE---VLTLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~---~l---l~~l~~~yd~VIiD~p~~~~~~~~~---~L~~AD~vviV~~p~~~slr 312 (427)
.|+.++.++.. ..........+. .+ +..+...+|||++|++........+ ....||++++|++++..||.
T Consensus 76 ~gi~cvesGgp-epg~gcagrgi~~~~~lLe~~~~~~~~~D~vl~Dvlgdvvcggfa~Pir~~~Adev~IVts~e~msLy 154 (264)
T PRK13231 76 NNTLCVESGGP-EPGVGCAGRGVIVAMNLLEKLGVFDNDPDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLY 154 (264)
T ss_pred CCEEEEECCCC-CCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCEECCCCCCCCCEEEEEECCCHHHHH
T ss_conf 98499737998-87766565217689899987264224798799943587205667045542669889999478589999
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 99999999998198767538999565898752005999999848953799068799999988479618988899989999
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANL 392 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~ 392 (427)
++.++.+.+++.+. +--.+|+|+.+.+.. .-..++|++.+|.++.+.||+|.. +.+|...|++++|..|.|+.+++
T Consensus 155 aAnnI~~~i~~~~~--rl~GiI~N~r~~~~e-~~iv~~fa~~~g~~vl~~IPr~~~-V~~ae~~~~tVie~~P~S~~A~~ 230 (264)
T PRK13231 155 AANNIAKGIKKLKG--KLGGIICNCRNVKNE-VEIVSEFASLIGSRIIGIIPRSNL-VQESELKASTVVETFPESSQASI 230 (264)
T ss_pred HHHHHHHHHHHHCC--CCCEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCHH-HHHHHHCCCEEEEECCCCHHHHH
T ss_conf 99999999999546--442089606898877-999999999719968996689478-88888629758997989889999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999852212232111058999987423
Q gi|254780725|r 393 LVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 393 ~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
|++||+.|........|+.-....|.+||..
T Consensus 231 Yr~LA~~I~~~~~~~~P~pl~~~~l~~~~~~ 261 (264)
T PRK13231 231 YSELANNIMNNQEFTTPEPMDIEEFEEFFYS 261 (264)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999985899978887998999999998
No 22
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=100.00 E-value=4.1e-31 Score=210.45 Aligned_cols=236 Identities=15% Similarity=0.135 Sum_probs=170.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC------CCHHHHHCCCCCHHHH
Q ss_conf 5675379997469887756899999999996269949999787989860334389987------8988863184561243
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI------NSISDAIYPVGRIDKA 231 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~------~~l~d~l~~~~rlD~~ 231 (427)
+...+||+|.+.||||||||+|+|||++||. .|+|||+||+|+| |++..+||..|. .++.+++...+. ..
T Consensus 101 g~~~~VIav~N~KGGVGKTTtav~LA~~LA~-~G~RVLvIDLDPQ-anlT~~~G~~pe~d~~~~~tl~~~l~~d~~--~~ 176 (387)
T TIGR03453 101 GEHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-RGYRVLAIDLDPQ-ASLSALFGFQPEFDVGENETLYGAIRYDDE--RR 176 (387)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCH-HHHHHHCCCCCCCCCCCCCCHHHHHHCCCC--CC
T ss_conf 9988089997888765699999999999997-7998899953701-678875289843466756429999844556--68
Q ss_pred HHHHHHHC-CCCCEEEEECCCCCCCHHC---------CC-----HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHH
Q ss_conf 37653202-4898068724876120320---------79-----999999899985128889973888889899999862
Q gi|254780725|r 232 FVSRLPVF-YAENLSILTAPAMLSRTYD---------FD-----EKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTL 296 (427)
Q Consensus 232 ~l~~~l~~-~~~gL~lL~a~~~~~~~~~---------~~-----~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~ 296 (427)
.+...+.+ +.+||+++|+...+...+. .. ...+...++.++..||||||||||.++..+.++|.+
T Consensus 177 ~l~~~i~~T~~~~LdliPa~~~L~~~E~~~~~~l~~~~~~~~~f~~rL~~aL~~v~d~YD~IlIDcPPsLg~lT~nAL~A 256 (387)
T TIGR03453 177 PLSEIIRKTYFPGLDLIPGNLELMEFEHETPRALSRGAGGDTIFFARVGEALAEVEDDYDVVVIDCPPQLGFLTLSALCA 256 (387)
T ss_pred CHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 79996114799996896598899998898899997431100269999999999766029999995898513999999998
Q ss_pred CCCCCCCCCCCHHHHHHHHHHH-------HHHHHCC--CCCCCCEEEEECCCCCCCCHH-HHHHHHHHHCCCE-EEEECC
Q ss_conf 0125435787768899999999-------9999819--876753899956589875200-5999999848953-799068
Q gi|254780725|r 297 SDKVVITTSLDLAGLRNSKNLI-------DVLKKLR--PADKPPYLVLNQVKTPKKPEI-SISDFCAPLGITP-SAIIPF 365 (427)
Q Consensus 297 AD~vviV~~p~~~slr~a~~ll-------~~l~~~~--~~~~~~~iVlNr~~~~~~~~i-~~~~~~~~lg~~~-~~~IP~ 365 (427)
||.+++++.|+...+..+.+++ +.+++.+ .+..-++++++|+++....+. -.+.+.+.+|..+ ...||.
T Consensus 257 Ad~vlIPv~p~~ld~~s~~qfl~~~~~l~~~i~~~g~~~~~d~~~~LlT~~d~~~~~~~~v~~~~r~~fg~~vl~~~i~~ 336 (387)
T TIGR03453 257 ATAVLITVHPQMLDVMSMSQFLLMTGDLLGVVRDAGGNLSYDWMRYLVTRYEPNDGPQAQMVAFMRSLFGEHVLTNPMLK 336 (387)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCEEEH
T ss_conf 19408788871777999999999999999999971677676405776451789984699999999998506542362016
Q ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 799999988479618988899989999999999
Q gi|254780725|r 366 DGAVFGMSANSGKMIHEVDPKSAIANLLVDFSR 398 (427)
Q Consensus 366 D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~ 398 (427)
. ..+++|...+++|.|..+..-..+.|.+.-+
T Consensus 337 S-~ai~~A~~~~~TiyE~~~~~~~r~ty~Ra~e 368 (387)
T TIGR03453 337 S-TAISDAGLTKQTLYEVERSQFTRSTYDRAME 368 (387)
T ss_pred H-HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 7-9998637637935987746589899999999
No 23
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=100.00 E-value=4.9e-31 Score=209.97 Aligned_cols=234 Identities=13% Similarity=0.085 Sum_probs=169.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCC------CHHHHHCCCCCHHHHHH
Q ss_conf 753799974698877568999999999962699499997879898603343899878------98886318456124337
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPIN------SISDAIYPVGRIDKAFV 233 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~------~l~d~l~~~~rlD~~~l 233 (427)
..+||+|.+.||||||||+|+|||++||. .|++||+||+|+| |++..+||..|.. ++.+++...+. ...+
T Consensus 120 ~~kVIaVaN~KGGVGKTTtav~LA~~LA~-~G~RVLlIDLDPQ-gnlS~~lG~~pe~d~~~~~tl~~~l~~d~~--~~~l 195 (405)
T PRK13869 120 HLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQ-ASLSALLGVLPETDVGANETLYAAIRYDDT--RRPL 195 (405)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCHH-HHHHHHHCCCCCCCCCCHHHHHHHHHCCCC--CCCH
T ss_conf 98289997888776599999999999997-7998899964561-788898089854566531359999844545--5879
Q ss_pred HHHHH-CCCCCEEEEECCCCCCCHHCCC--------------HHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCC
Q ss_conf 65320-2489806872487612032079--------------99999989998512888997388888989999986201
Q gi|254780725|r 234 SRLPV-FYAENLSILTAPAMLSRTYDFD--------------EKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSD 298 (427)
Q Consensus 234 ~~~l~-~~~~gL~lL~a~~~~~~~~~~~--------------~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD 298 (427)
...+. .+.+||+++|+...+...+... ...+...++.+...||||||||||.++..+.++|.+||
T Consensus 196 ~~~I~~T~~~~LdlIPa~l~L~~~E~~~~~~l~~~~~~~~~~~~rl~~~L~~v~d~YDvIiIDcPPsLg~lT~nAL~AAd 275 (405)
T PRK13869 196 RDVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDRGTRDGLFFTRVAQAFDEVADDYDVVVIDCPPQLGFLTLSGLCAAT 275 (405)
T ss_pred HHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC
T ss_conf 99521679999689589889999888759998743315568999999999864412998999599826599999999828
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHH-------HCCCCC--CCCEEEEECCCCCCCCH-HHHHHHHHHHCCCEE-EEECCCH
Q ss_conf 254357877688999999999999-------819876--75389995658987520-059999998489537-9906879
Q gi|254780725|r 299 KVVITTSLDLAGLRNSKNLIDVLK-------KLRPAD--KPPYLVLNQVKTPKKPE-ISISDFCAPLGITPS-AIIPFDG 367 (427)
Q Consensus 299 ~vviV~~p~~~slr~a~~ll~~l~-------~~~~~~--~~~~iVlNr~~~~~~~~-i~~~~~~~~lg~~~~-~~IP~D~ 367 (427)
.++|++.|+...+..+.+++..+. +.+.+. .-++++++|++...... ...+.+.+.+|-.+. ..||..
T Consensus 276 ~vlIPv~pe~ld~~s~~qfl~~~~~l~~~~~~~~~~~~~dfir~LlTr~d~~~~~~~~v~~~lr~~fg~~Vl~~~i~~S- 354 (405)
T PRK13869 276 SMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEPQDAPQTKVTALLRNMFEDHVLTNPMVKS- 354 (405)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCHHH-
T ss_conf 6386489608789999999999999999999707887854045631406899825999999999998788860807377-
Q ss_pred HHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Q ss_conf 9999988479618988899989999999999
Q gi|254780725|r 368 AVFGMSANSGKMIHEVDPKSAIANLLVDFSR 398 (427)
Q Consensus 368 ~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~ 398 (427)
..+++|....++|.|..+..-..+.|.+.-+
T Consensus 355 ~ais~A~~~~~TvyE~~~~~~~r~Ty~Ra~e 385 (405)
T PRK13869 355 AAVSDAGLTKQTLYEIGRENLTRSTYDRAME 385 (405)
T ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
T ss_conf 9999868744962876505278899999999
No 24
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.98 E-value=2.9e-30 Score=205.23 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=188.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHCCC
Q ss_conf 7999746988775689999999999626994999978798986033438998789888631845-612433765320248
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLPVFYA 241 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~~~ 241 (427)
.|+|+| |||+||||+++|++.+||. .|++|++|++|+...++.. |.-...+++.|.+...+ +.+...++..+.+.-
T Consensus 2 ~iaiyG-KGGIGKSTtsaNlsaaLA~-~GkkVl~IGcDpk~DsT~~-L~g~~~~tvld~l~~~~~~~~~~~~edvi~~G~ 78 (271)
T CHL00072 2 KIAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFT-LTGFLIPTIIDTLQSKDYHYEDVWPEDVIYKGY 78 (271)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCHHHHHHH-HCCCCCCCHHHHHHHHCCCCCCCCHHHHHHCCC
T ss_conf 699978-9854485889999999998-7997999789973777740-069988859999975378732164999985277
Q ss_pred CCEEEEECCCC-CC--CHHCCCHHHHHHHHHHHH--HCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 98068724876-12--032079999999899985--128889973888889-8999998620125435787768899999
Q gi|254780725|r 242 ENLSILTAPAM-LS--RTYDFDEKMIVPVLDILE--QIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNSK 315 (427)
Q Consensus 242 ~gL~lL~a~~~-~~--~~~~~~~~~l~~ll~~l~--~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a~ 315 (427)
.|+.++-++.. +. .....-...+ .+++.+. +.||||+.|++...- ......+..||++++|++++..|++.+.
T Consensus 79 ~gi~cvEaGGPepGvGCaGrgi~~~i-~lL~~l~~~~d~D~V~yDvlgDVVCGGFa~Pi~~Ad~~~iVts~e~malyaAN 157 (271)
T CHL00072 79 GGVDCVEAGGPPAGAGCGGYVVGETV-KLLKELNAFYEYDVILFDVLGDVVCGGFAAPLNYADYCIIITDNGFDALFAAN 157 (271)
T ss_pred CCCEEEECCCCCCCCCCCCCCCHHHH-HHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHH
T ss_conf 88466543899988777886519999-99997376213888999447765565456750008889999567088999999
Q ss_pred HHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHH----
Q ss_conf 9999999819--8767538999565898752005999999848953799068799999988479618988899989----
Q gi|254780725|r 316 NLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAI---- 389 (427)
Q Consensus 316 ~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~---- 389 (427)
|+...+++.. ...+--.+|+|+.+ ..+ -.++|.+.+|.++.+.||.|. .+.+|.++|++++|..|.|+-
T Consensus 158 nI~~~i~~~a~~~~~rl~GiI~N~~~---~~~-~v~~fa~~~g~~~i~~iPrd~-~V~~ae~~~~TviE~~p~s~~~~~~ 232 (271)
T CHL00072 158 RIAASVREKARTHPLRLAGLVGNRTS---KRD-LIDKYVEACPMPVLEVLPLIE-DIRVSRVKGKTLFEMAESEPSLNYV 232 (271)
T ss_pred HHHHHHHHHHHCCCCCCCEEEECCCC---CHH-HHHHHHHHCCCCEEEECCCCC-HHHHHHHCCCCEEECCCCCHHHHHH
T ss_conf 99999999730468644436522688---378-999999973996698568711-6689997488204228998247899
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 999999999985221223211105899998742
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
++.|++||+.|.+......|+.-....|..||+
T Consensus 233 ~~~Yr~LA~~I~~n~~~~iP~pl~~~el~~ll~ 265 (271)
T CHL00072 233 CDFYLNIADQLLSQPEGVVPKELPDRELFSLLS 265 (271)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999997399986688788799999999
No 25
>PRK10037 cell division protein; Provisional
Probab=99.98 E-value=2.3e-30 Score=205.88 Aligned_cols=224 Identities=15% Similarity=0.204 Sum_probs=168.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCC--CCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 3799974698877568999999999962699499997879898603343899--87898886318456124337653202
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKD--PINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~--~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
++|++.|.||||||||+++||||+|++ .|++|++||+|++ +.+.+.||++ ...|++.++.+.+. ++....+
T Consensus 2 ~iial~s~kGGVGkTTltAnLA~aL~~-~g~~VlaID~dpq-N~Lrlhfg~~~~~~~Gwa~a~l~g~~-----W~~a~~~ 74 (250)
T PRK10037 2 AILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPD-NLLRLSFNVDFTHRQGWARALLDGQD-----WRDAGLR 74 (250)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCHH-HHHHHHCCCCCCCCCCHHHHHHCCCC-----HHHHHHH
T ss_conf 379996078887689999999999997-7991899957825-66787549985447729999856997-----8999850
Q ss_pred CCCCEEEEECCCCC-CCHHCCCH--HHHHHHHHHH-----HHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 48980687248761-20320799--9999989998-----5128889973888889899999862012543578776889
Q gi|254780725|r 240 YAENLSILTAPAML-SRTYDFDE--KMIVPVLDIL-----EQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGL 311 (427)
Q Consensus 240 ~~~gL~lL~a~~~~-~~~~~~~~--~~l~~ll~~l-----~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~sl 311 (427)
..+|+.++|.+... ++...+.. +....++..+ ...|++||+|+|++.++.+..++..||.+++|+.||..|.
T Consensus 75 ~~~gl~~LPfG~l~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~vliD~P~g~s~~~~~~l~~AD~vLvVv~aDa~s~ 154 (250)
T PRK10037 75 YTSQLDLLPFGQLSIEEQENPQHWQTTLGDICSALQQLKASGRYQWILLDLPRGASPLTRQLLSLCDHSLAIVNVDANCH 154 (250)
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCEEEEEECCCHHHH
T ss_conf 56993697278799899863887765179999998620025789989996599982999999985787899836787789
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHH-HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999999981987675389995658987520059999-998489537990687999999884796189888999899
Q gi|254780725|r 312 RNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDF-CAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 312 r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~-~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
-. +.. +.. ....++++|++++.+.-.....++ .+.++.....+|..|. .+.+|...++|+.+++|.|.++
T Consensus 155 ~~---L~q---~~~--~~g~~~liNq~~~~s~l~~Dl~~l~~q~~~~llp~~IHrDe-av~EAlA~~~~v~~y~P~SqAa 225 (250)
T PRK10037 155 IR---LHQ---QAL--PAGAHILINDLRIGSQLQDDLYQLWLQSQRRLLPMLIHRDE-AMAECLAAKQPLGEYRSDSLAA 225 (250)
T ss_pred HH---HHH---HCC--CCCCCEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEECCCC-HHHHHHHCCCCCCCCCCCCHHH
T ss_conf 98---734---214--78982775166711046699999999744241556751754-6899986599874759757788
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780725|r 391 NLLVDFSRVLM 401 (427)
Q Consensus 391 ~~~~~La~~i~ 401 (427)
++|..||.+..
T Consensus 226 ~D~~~LA~W~l 236 (250)
T PRK10037 226 EEILTLANWCL 236 (250)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 26
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.98 E-value=4.5e-30 Score=204.05 Aligned_cols=257 Identities=13% Similarity=0.162 Sum_probs=199.3
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
=|.|+|+| |||+||||+++||+.+||+ .|+||++|.+|+...++.++++.....++.+.+......++.-++..+...
T Consensus 4 mr~IAiYG-KGGIGKSTtssNlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~Tvld~~~~~~~~ed~~ledvv~~G 81 (293)
T PRK13234 4 LRQIAFYG-KGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (293)
T ss_pred CCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCCCCCCCHHHHHHCC
T ss_conf 75799977-9844587789999999997-799699974898316568762899997088998764981215387897437
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-----CCCEEEECCCCC-CCHHHHHHH--HHCCCCCCCCCCCHHHHH
Q ss_conf 898068724876120320799999998999851-----288899738888-898999998--620125435787768899
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-----IFPLVILDVPHV-WNSWTQEVL--TLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-----~yd~VIiD~p~~-~~~~~~~~L--~~AD~vviV~~p~~~slr 312 (427)
..|+....++.. +.........+...++.|.+ .||||+.|+... .......-+ ..||++++|+..+..|+.
T Consensus 82 ~~gI~CVEsGGP-ePGvGCAGRGIitai~~Le~lga~ed~D~V~yDVLGDVVCGGFAmPir~g~A~evyIVtSge~msly 160 (293)
T PRK13234 82 YKGIKCVESGGP-EPGVGCAGRGVITSINFLEENGAYDDVDYVSYDVLGDVVCGGFAMPIRENKAQEIYIVMSGEMMALY 160 (293)
T ss_pred CCCEEEEECCCC-CCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHH
T ss_conf 798489768998-9988877713146788887718765799999956776651475566545887689999467187999
Q ss_pred HHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 999999999981--987675389995658987520059999998489537990687999999884796189888999899
Q gi|254780725|r 313 NSKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 313 ~a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
.+.|+.+.+.+. +.+.+--.+|+|+-+.+.. +--+++|++.+|.++.+.||+|. .+.+|..+|++++|.+|.|+.+
T Consensus 161 AANnI~~~i~~~~~~g~~rlgGlI~N~r~~~~e-~~~v~~fa~~~gt~ii~~IPrs~-~v~~aE~~~~TviE~~P~s~~A 238 (293)
T PRK13234 161 AANNIAKGILKYANSGGVRLGGLICNERQTDRE-LELAEALAKRLGSKLIHFVPRDN-IVQHAELRRMTVIEYAPDSKQA 238 (293)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCH-HHHHHHHHHHHCCCEEEECCCCH-HHHHHHHCCCEEEEECCCCHHH
T ss_conf 999999999998632696246899717898537-99999999984993799779968-8999997397778968898799
Q ss_pred HHHHHHHHHHHCCC-CCCCCCCCHHHHHHHHHH
Q ss_conf 99999999985221-223211105899998742
Q gi|254780725|r 391 NLLVDFSRVLMGRV-TVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 391 ~~~~~La~~i~gr~-~~~~~k~~~~~~l~~lf~ 422 (427)
+.|++||+.|.... +..-|++-....|+.|+.
T Consensus 239 ~~Yr~LA~~I~~n~~~~~iP~Pl~~~eL~~l~~ 271 (293)
T PRK13234 239 GEYRALAEKIHANSGKGTIPTPITMEELEDMLM 271 (293)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 999999999984788700188899899999999
No 27
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.98 E-value=5.5e-31 Score=209.66 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=148.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCH-HHHHHHHHH--HCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561-243376532--024
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRI-DKAFVSRLP--VFY 240 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rl-D~~~l~~~l--~~~ 240 (427)
|+|+|+||||||||+|+|||++||+ .|++|+++|+|+|+++...+++..+.....+........ ......... ..+
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRN 79 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCC
T ss_conf 9897689980699999999999997-899789983899996258865876434444441010112100245642224555
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89806872487612032079999999899985128889973888889899999862012543578776889999999999
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
.+++.++++...+.... .........+..++..|||||+|+|++++..+..++..+|.+++|++|+..|+++++++++.
T Consensus 80 ~~~l~l~p~~~~~~~~~-~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~ 158 (212)
T pfam01656 80 LDPLLLIPSNLSLANFE-SELILEGGEEGLIKLAYDYVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGAQRLLEL 158 (212)
T ss_pred CCCEEEECCCHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 58746533501566777-77799999987666049989994799755999999983998999948976999999999999
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCHH--HHHHHHHHHCCCE---EEEECCCHHH
Q ss_conf 99819876753899956589875200--5999999848953---7990687999
Q gi|254780725|r 321 LKKLRPADKPPYLVLNQVKTPKKPEI--SISDFCAPLGITP---SAIIPFDGAV 369 (427)
Q Consensus 321 l~~~~~~~~~~~iVlNr~~~~~~~~i--~~~~~~~~lg~~~---~~~IP~D~~~ 369 (427)
+++.+. +..++|+||++....... ..+.+++..+.+. ...||+|...
T Consensus 159 ~~~l~~--~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v 210 (212)
T pfam01656 159 VERLGL--KILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLAL 210 (212)
T ss_pred HHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 998599--6229999148899836630789999999789975140411687766
No 28
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.97 E-value=5.5e-30 Score=203.54 Aligned_cols=259 Identities=14% Similarity=0.169 Sum_probs=200.4
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 75379997469887756899999999996269949999787989860334389987898886318456124337653202
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
.=|.|||+| |||+||||+++|++.+||+ .|++|++|.+|+...++.++++-....++.+.+......++..++..+..
T Consensus 5 ~mk~IAiYG-KGGIGKSTts~NlsAAlA~-~G~rVl~IGCDPK~DSTr~Llgg~~~~tvld~~~e~~~~ed~~ledvv~~ 82 (295)
T PRK13236 5 NIRQIAFYG-KGGIGKSTTSQNTLAAMAE-MGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELEEVMLT 82 (295)
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHCCCCCCCHHHHHHC
T ss_conf 761899967-9843475789999999997-79969997889802667876389999718888876098444548887422
Q ss_pred CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-----HCCCEEEECCCCC-CCHHHHHHHH--HCCCCCCCCCCCHHHH
Q ss_conf 489806872487612032079999999899985-----1288899738888-8989999986--2012543578776889
Q gi|254780725|r 240 YAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-----QIFPLVILDVPHV-WNSWTQEVLT--LSDKVVITTSLDLAGL 311 (427)
Q Consensus 240 ~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-----~~yd~VIiD~p~~-~~~~~~~~L~--~AD~vviV~~p~~~sl 311 (427)
.-.|+....++.. +.........+...++.|. +.||||+.|+... .......-+. .||++++|+..+..++
T Consensus 83 G~~Gi~CvEsGGP-ePGvGCAGRGIitai~lLee~ga~e~~D~V~yDVLGDVVCGGFAmPir~g~A~evyiVtSge~mal 161 (295)
T PRK13236 83 GFRGVRCVESGGP-EPGVGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAM 161 (295)
T ss_pred CCCCCEEEECCCC-CCCCCCCCCEEEEHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEEEEECCCHHHH
T ss_conf 6588379878999-998988886254056679871985569989885057753267546566787648999956818899
Q ss_pred HHHHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 9999999999981--98767538999565898752005999999848953799068799999988479618988899989
Q gi|254780725|r 312 RNSKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAI 389 (427)
Q Consensus 312 r~a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~ 389 (427)
..+.|+.+.+++. +.+.+--.+|+|+-+.+... --+++|++.+|.++.+.||+|. .+.+|..+|++++|..|.|+.
T Consensus 162 yAANNI~~~i~~~a~~g~~rlgGiI~N~r~~~~e~-~~v~~fa~~~gt~ii~~iPr~~-~V~~ae~~~~TviE~~P~s~~ 239 (295)
T PRK13236 162 YAANNIARGILKYAHTGGVRLGGLICNSRNVDREI-ELIETLAKRLNTQMIHFVPRDN-IVQHAELRRMTVNEYAPDSNQ 239 (295)
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCHH-HHHHHHHHHHCCCEEEECCCCH-HHHHHHHCCCEEEEECCCCHH
T ss_conf 99999999999997426970358996078887479-9999999981992699657838-888999739876887889779
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999852212232111058999987423
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
++.|++||+.|....+...|++-....|..|+..
T Consensus 240 A~~Yr~LA~~i~~n~~~~vP~Pl~~~eL~~l~~~ 273 (295)
T PRK13236 240 GNEYRILAKKIINNDKLTIPTPIEMEELEELLIE 273 (295)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999999985899867898998899999998
No 29
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=1.6e-29 Score=200.75 Aligned_cols=239 Identities=22% Similarity=0.304 Sum_probs=175.1
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC--CCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 5379997469887756899999999996269949999787989860334389987--89888631845612433765320
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI--NSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~--~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
.++|+|.+.||||||||+|+|||.+||...|++|++||+|+| +++..+|+.++. ....+++...... ........
T Consensus 2 ~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ-~s~t~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 78 (259)
T COG1192 2 MKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQ-GSLTSWLGLRPDLEGDLYNLLSGLKER--PDILDYTV 78 (259)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC-CCHHHHHCCCCCCCCCHHHHHHCCCCC--CCHHHCCC
T ss_conf 769999857888519999999999999838997899978999-417778466643231036676323332--21022034
Q ss_pred CCCCCEEEEECCCCCCC--HHCC----CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 24898068724876120--3207----99999998999851288899738888898999998620125435787768899
Q gi|254780725|r 239 FYAENLSILTAPAMLSR--TYDF----DEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~--~~~~----~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr 312 (427)
..++++++|+..++.. .... ....+..+++.....|||||+|+|+..+..+.+++.+||.++++++++..++.
T Consensus 79 -~~~~l~~ip~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~yD~iiID~pp~l~~l~~nal~asd~vliP~~~~~~~~~ 157 (259)
T COG1192 79 -VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYDYIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLE 157 (259)
T ss_pred -CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCEEECCCCCHHHHH
T ss_conf -4567312357600010045665421178999999752026999899899986167779999982755670475086898
Q ss_pred HHHHHHHHHHHC---CCCC-CCCEEEEECCCCCCC-CHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHCCCCEEEECCC
Q ss_conf 999999999981---9876-753899956589875-200599999984895-3799068799999988479618988899
Q gi|254780725|r 313 NSKNLIDVLKKL---RPAD-KPPYLVLNQVKTPKK-PEISISDFCAPLGIT-PSAIIPFDGAVFGMSANSGKMIHEVDPK 386 (427)
Q Consensus 313 ~a~~ll~~l~~~---~~~~-~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~-~~~~IP~D~~~~~~A~~~G~pi~e~~p~ 386 (427)
....+++.+... ..+. ....++.|++..... .....+...+.++.+ ....||... .+.++...|+|+.+..++
T Consensus 158 ~l~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~a~~~g~~~~~~~~~ 236 (259)
T COG1192 158 GLEQLLNTLEDLLKLRRNKLIVVGILITRFDSRTKLADEVLQELKQLLGDPVLKTKIPRRV-AYREAAAEGKPLYEYDPK 236 (259)
T ss_pred HHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCH-HHHHHHHCCCCEEEECCC
T ss_conf 8999999999999852453232567435347420157899999997514311114476532-688788749801550787
Q ss_pred CHHHHHHHHHHHHHHCCC
Q ss_conf 989999999999985221
Q gi|254780725|r 387 SAIANLLVDFSRVLMGRV 404 (427)
Q Consensus 387 s~~a~~~~~La~~i~gr~ 404 (427)
++.++.+.++++.+..+.
T Consensus 237 ~~~~~~~~~~~~e~~~~~ 254 (259)
T COG1192 237 SKAAEEYYELAKELLEEL 254 (259)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 557999999999999975
No 30
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.97 E-value=3.6e-29 Score=198.54 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=160.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCHHHCCCCCCCC------HHHHHCCCCCHH
Q ss_conf 456753799974698877568999999999962699499997-8798986033438998789------888631845612
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD-LDLPYGTANINFDKDPINS------ISDAIYPVGRID 229 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD-lDl~~g~~~~~l~~~~~~~------l~d~l~~~~rlD 229 (427)
.+....||+|.+.||||||||+|+|||.+||. .|+|||+|| +|+| +++..++|..|... +...... ++.+
T Consensus 102 ~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl-~G~RVLlID~LDPQ-anlT~~~G~~pd~~~~~~~tl~~~~~~-~~~~ 178 (388)
T PRK13705 102 EDEFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQ-GTASMYHGWVPDLHIHAEDTLLPFYLG-EKDD 178 (388)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHC-CCCC
T ss_conf 99987289995278885599999999999997-79908999587888-656435688887665644302477614-6665
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCCCCHHC-C------------CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 433765320-24898068724876120320-7------------999999989998512888997388888989999986
Q gi|254780725|r 230 KAFVSRLPV-FYAENLSILTAPAMLSRTYD-F------------DEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLT 295 (427)
Q Consensus 230 ~~~l~~~l~-~~~~gL~lL~a~~~~~~~~~-~------------~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~ 295 (427)
+...+. .+.+||+++|+...+...+. + ....++..++.+...||||||||||..+..+.++|.
T Consensus 179 ---~~~~I~~T~~~gLDlIPs~l~L~~~E~el~~~~~~~~~~~~~~~~Lr~aL~~v~d~YD~IlIDcPPsLG~LTiNAL~ 255 (388)
T PRK13705 179 ---AAYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVC 255 (388)
T ss_pred ---HHHEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf ---54504347889979970898999999999775531232225899999999862503999999589717799999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCCEEEEECCCCCCCCHHH--HHHHHHHHCCCEEEEECCC
Q ss_conf 2012543578776889999999999998-------198767538999565898752005--9999998489537990687
Q gi|254780725|r 296 LSDKVVITTSLDLAGLRNSKNLIDVLKK-------LRPADKPPYLVLNQVKTPKKPEIS--ISDFCAPLGITPSAIIPFD 366 (427)
Q Consensus 296 ~AD~vviV~~p~~~slr~a~~ll~~l~~-------~~~~~~~~~iVlNr~~~~~~~~i~--~~~~~~~lg~~~~~~IP~D 366 (427)
+||.++|++.|+.-.+-.+.+++..+.. .+.. ..++++++|+++...++-. ..-+.+.+|-.+...--..
T Consensus 256 AAd~vlIPv~p~~lD~~S~~qFl~m~~~l~~~~~~~g~~-~~~r~L~Tr~e~~d~~q~~~m~~~lr~~fg~~vl~~~i~~ 334 (388)
T PRK13705 256 AADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFE-PDVRILLTKYSNANGSQSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred HHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 808548678940776999999999999999998751777-6348998725899987899999999999767776362257
Q ss_pred HHHHHHHHHCCCCEEEECC
Q ss_conf 9999998847961898889
Q gi|254780725|r 367 GAVFGMSANSGKMIHEVDP 385 (427)
Q Consensus 367 ~~~~~~A~~~G~pi~e~~p 385 (427)
...+++|....++|.|...
T Consensus 335 S~aI~~A~~~~~TlyE~~~ 353 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAI 353 (388)
T ss_pred HHHHHHHHHHCCCCEECCC
T ss_conf 8999872652073010244
No 31
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.97 E-value=1.4e-28 Score=194.96 Aligned_cols=223 Identities=15% Similarity=0.100 Sum_probs=160.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCHHHCCCCCCC------CHHHHHCCCCCHH
Q ss_conf 456753799974698877568999999999962699499997-879898603343899878------9888631845612
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD-LDLPYGTANINFDKDPIN------SISDAIYPVGRID 229 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD-lDl~~g~~~~~l~~~~~~------~l~d~l~~~~rlD 229 (427)
.+....||+|.+.||||||||+|+|||.+||. .|+|||+|| +|+| +++..++|..|.. ++...... ++.
T Consensus 102 ~~~~~~VIAVaN~KGGVGKTTTavnLA~~LAl-~G~RVL~ID~lDPQ-aslS~~~G~~pd~~~~~~~t~~~~~~~-~~~- 177 (387)
T PHA02519 102 DDKNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQ-GTASMYHGYVPDLHIHADDTLLPFYLG-ERD- 177 (387)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHC-CCC-
T ss_conf 98875289986168877699999999999997-69968999598852-004314588887664655413577615-755-
Q ss_pred HHHHHHHH-HCCCCCEEEEECCCCCCCHHCC-------------CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 43376532-0248980687248761203207-------------999999989998512888997388888989999986
Q gi|254780725|r 230 KAFVSRLP-VFYAENLSILTAPAMLSRTYDF-------------DEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLT 295 (427)
Q Consensus 230 ~~~l~~~l-~~~~~gL~lL~a~~~~~~~~~~-------------~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~ 295 (427)
.++..+ ..+.+||+++|+...+...+.- ....+...++.+...||||||||||..+..+.++|.
T Consensus 178 --~~~~~I~~T~~~gLDlIPa~l~L~~~E~el~~~~~~~~~~~~~~~~L~~aL~~v~d~YDvVlIDcPPsLG~LTlNAL~ 255 (387)
T PHA02519 178 --NAEYAIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVWDNYDIIVIDSAPNLGTGTINVVC 255 (387)
T ss_pred --CHHHHEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHH
T ss_conf --577603368989967974888999999999878743142234899999998752346998999799736899999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHH------CCCCCCCCEEEEECCCCCCCCHH--HHHHHHHHHCCCEEEEECCCH
Q ss_conf 2012543578776889999999999998------19876753899956589875200--599999984895379906879
Q gi|254780725|r 296 LSDKVVITTSLDLAGLRNSKNLIDVLKK------LRPADKPPYLVLNQVKTPKKPEI--SISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 296 ~AD~vviV~~p~~~slr~a~~ll~~l~~------~~~~~~~~~iVlNr~~~~~~~~i--~~~~~~~~lg~~~~~~IP~D~ 367 (427)
+||.++|++.|++..+-.+.+++..+.. ......-++++++|+++...+.- -...+.+.+|-.+....-...
T Consensus 256 AAd~vlIPv~p~~ld~~S~~qFl~m~~~l~~~v~~~g~~~~~r~LiTr~ep~d~~q~~~m~~~lR~~fg~~vl~~~i~~S 335 (387)
T PHA02519 256 AADVIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSLTVGNQSRWMEEQIRNTWGSMVLRQVVRVT 335 (387)
T ss_pred HCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 82965868896387799999999999999999862378750468775358999888999999999998788864623587
Q ss_pred HHHHHHHHCCCCEEEECC
Q ss_conf 999998847961898889
Q gi|254780725|r 368 AVFGMSANSGKMIHEVDP 385 (427)
Q Consensus 368 ~~~~~A~~~G~pi~e~~p 385 (427)
..+++|....++|.|...
T Consensus 336 ~aI~~A~~~~qTlYE~~~ 353 (387)
T PHA02519 336 DEVGKGQIKMRTVFEQAA 353 (387)
T ss_pred HHHHHHHHHCCCCEECCC
T ss_conf 999973651274121354
No 32
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.97 E-value=1.8e-29 Score=200.43 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=148.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|.|||+| ||||||||+++|||.+||+ .|+||+++|+|++..++...++.....++.+.+......+...++..+....
T Consensus 1 ~~iaiyG-KGGVGKTTts~NLaaaLA~-~G~rVl~iD~Dp~~~st~~L~g~~~~~~i~~~~~~~~~~~~~~~~~ii~~g~ 78 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGF 78 (212)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCHHHHHHHHCCCCCEEEEEEEEECC
T ss_conf 9599988-9835687789999999998-6996999903899873303119977871999987527866445667899668
Q ss_pred CCEEEEECCCCCCCHH-----CCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--HHH-HHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032-----0799999998999851288899738888898--999-9986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTY-----DFDEKMIVPVLDILEQIFPLVILDVPHVWNS--WTQ-EVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~-----~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~~~-~~L~~AD~vviV~~p~~~slr~ 313 (427)
.|+.++++........ ......+..-+..+...||||++|+...... .+. -....||++++|++|+..|+.+
T Consensus 79 ~gv~~veaggp~~g~~~ag~~i~~~~~ll~~~~~~~~~~D~IliD~lGdvv~~gf~~pi~~~~Ad~vlIvtt~E~~Al~~ 158 (212)
T cd02117 79 GGVKCVESGGPEPGVGCAGRGVITAVNLLEKEGFAEDDLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYA 158 (212)
T ss_pred CCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCEECCCCCCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 87089988997767654541178899999974100257999999658854035633432116688899980693578898
Q ss_pred HHHHHHHHHHC--CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99999999981--987675389995658987520059999998489537990687
Q gi|254780725|r 314 SKNLIDVLKKL--RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFD 366 (427)
Q Consensus 314 a~~ll~~l~~~--~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D 366 (427)
+.++++.++.. +.+.+-..+|.||.+.... +...++|++.+|.++.+.||+|
T Consensus 159 a~~l~k~I~~~~~~~n~~l~GiI~N~~~~~~~-~~~i~~f~~~~g~~vl~~IP~d 212 (212)
T cd02117 159 ANNICKGIRKYAKSGGVRLGGLICNSRNTDRE-TELIDAFAERLGTQVIHFVPRD 212 (212)
T ss_pred HHHHHHHHHHHHHCCCCCEEEEEEECCCCCCH-HHHHHHHHHHHCCEEEEECCCC
T ss_conf 89999999999736798148999846788864-9999999998399189974899
No 33
>TIGR01287 nifH nitrogenase iron protein; InterPro: IPR005977 The enzyme responsible for nitrogen fixation, the nitrogenase, shows a high degree of conservation of structure, function, and amino acid sequence across wide phylogenetic ranges. All known Mo-nitrogenases consist of two components, component I (also called dinitrogenase, or Fe-Mo protein), an alpha2beta2 tetramer encoded by the nifD and nifK genes, and component II (dinitrogenase reductase, or Fe protein) a homodimer encoded by the nifH gene , . Two operons, nifDK and nifEN, encode a tetrameric (alpha2beta2 and N2E2) enzymatic complex. Nitrogenase contains two unusual rare metal clusters; one of them is the iron molybdenum cofactor (FeMo-co), which is considered to be the site of dinitrogen reduction and whose biosynthesis requires the products of nifNE and of some other nif genes . It has been proposed that NifNE might serve as a scaffold upon which FeMo-co is built and then inserted into component I .; GO: 0016163 nitrogenase activity, 0009399 nitrogen fixation, 0016612 molybdenum-iron nitrogenase complex.
Probab=99.97 E-value=1.4e-28 Score=194.87 Aligned_cols=258 Identities=16% Similarity=0.209 Sum_probs=208.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 379997469887756899999999996269-9499997879898603343899878988863184561243376532024
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFA-METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~-~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
|-|||+| |||.||||+..|++.+||.. + ++|+++-+||-.-++.++++-.+..|+.|.++..+.++..-++..+...
T Consensus 1 rqiAiYG-KGGIGKSTT~~N~~AAla~~-gdkkVl~~GCDPKaDsTr~l~Gg~~~~TVLd~lre~G~ve~~~~e~v~~~G 78 (278)
T TIGR01287 1 RQIAIYG-KGGIGKSTTTQNIAAALAEM-GDKKVLVVGCDPKADSTRLLLGGKAQPTVLDVLREKGAVEDVELEDVIKEG 78 (278)
T ss_pred CEEEEEC-CCCCCCCHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCHHHEEC
T ss_conf 9488862-78867006888999999862-495589972388520234651774455489999856871144510220016
Q ss_pred CCCEEEEECC-CCC----CCHHCCCHHHHHHHHHHHHH-CCCEEEEC-CCCCCCHHHHHHHH--HCCCCCCCCCCCHHHH
Q ss_conf 8980687248-761----20320799999998999851-28889973-88888989999986--2012543578776889
Q gi|254780725|r 241 AENLSILTAP-AML----SRTYDFDEKMIVPVLDILEQ-IFPLVILD-VPHVWNSWTQEVLT--LSDKVVITTSLDLAGL 311 (427)
Q Consensus 241 ~~gL~lL~a~-~~~----~~~~~~~~~~l~~ll~~l~~-~yd~VIiD-~p~~~~~~~~~~L~--~AD~vviV~~p~~~sl 311 (427)
-.+++..-++ +.| .-.--+..=.+..-....++ .-|||+.| ++.........-+. .|++|++|++.|+.++
T Consensus 79 f~girCVESGGPePGVGCAGRGvItai~lL~~~g~y~dLdlD~V~YDVLGDVVCGGFAmP~R~g~A~eiYiVtSge~MAl 158 (278)
T TIGR01287 79 FGGIRCVESGGPEPGVGCAGRGVITAIDLLEELGAYEDLDLDVVIYDVLGDVVCGGFAMPLREGLAQEIYIVTSGEMMAL 158 (278)
T ss_pred CCCEEEEEECCCCCCCCCCCCHHEEEEHHHHHCCCCCCCCCCEEEEEECCCEEECCCCCHHHCCCCCEEEEECCCHHHHH
T ss_conf 88318885076878952068711201337753378731167768984236556566036100588654888603406789
Q ss_pred HHHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHH
Q ss_conf 99999999999819--8767538999565898752005999999848953799068799999988479618988899989
Q gi|254780725|r 312 RNSKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAI 389 (427)
Q Consensus 312 r~a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~ 389 (427)
..|+|+.+=+.+.. ...+.=.+|.|.-......|+ .++|++.+|..+.+.+|.|. .+.+|+-+++++.|++|.|..
T Consensus 159 YAANNI~kGI~kYa~~GGv~LGG~IcN~R~~~~e~El-~~~fA~~lgtq~i~~VPrs~-~V~~AEl~~~TVIE~dP~s~q 236 (278)
T TIGR01287 159 YAANNIAKGILKYAKSGGVRLGGIICNSRNVDDEKEL-VDEFAKKLGTQLIHFVPRSN-IVQKAELEKKTVIEYDPESEQ 236 (278)
T ss_pred HHHHHHHHHHHHHHHCCCCEECCEEECCCCCCCHHHH-HHHHHHHHCCEEEEECCCCC-CCHHHHHCCCCEEEECCCCHH
T ss_conf 9997887778999753882222478714576217899-99999873770675217885-212787368845633887157
Q ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999999852212232111058999987423
Q gi|254780725|r 390 ANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 390 a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
|+.|++||+.|.......-|++-....|..++.+
T Consensus 237 A~~YR~LA~~I~~N~~~~iP~Pl~~~eL~~~~~~ 270 (278)
T TIGR01287 237 ANEYRELAKKIYENEEFVIPTPLEMEELEELLMK 270 (278)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 8999999999982578527998987899999987
No 34
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.96 E-value=5.1e-29 Score=197.58 Aligned_cols=105 Identities=36% Similarity=0.584 Sum_probs=101.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
||+|+|+|||+|+||+|+|+||+||++.+++|+|+|+|+|||+
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80687248761203207999999989998512888997388888989999986201254357877688999999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLK 322 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~ 322 (427)
||||+|+|+.|++|+..+++.||.+++|++|+++++|+++|+++.++
T Consensus 44 ---------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~l~~l~ 90 (106)
T cd03111 44 ---------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLR 90 (106)
T ss_pred ---------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf ---------------------------------78999186553889999998679799980677489997999999999
Q ss_pred HCCCC-CCCCEEEEEC
Q ss_conf 81987-6753899956
Q gi|254780725|r 323 KLRPA-DKPPYLVLNQ 337 (427)
Q Consensus 323 ~~~~~-~~~~~iVlNr 337 (427)
.++++ +.++++|+||
T Consensus 91 ~l~~~~~~ki~lVvNR 106 (106)
T cd03111 91 VLDYSLPAKIELVLNR 106 (106)
T ss_pred HCCCCCCCCEEEEECC
T ss_conf 8499973656998579
No 35
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.96 E-value=9.6e-28 Score=189.76 Aligned_cols=177 Identities=19% Similarity=0.227 Sum_probs=129.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCC-CCCHHHHHHHHHHHCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318-45612433765320248
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYP-VGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~-~~rlD~~~l~~~l~~~~ 241 (427)
.|+|+|+||||||||+|+|||..+ ++|+++|+|++.++.+.+|+.++.......... ...++.... +.
T Consensus 1 kIaV~SgKGGVGKTT~a~nLA~~l-----~~V~liD~D~~~~n~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------~~ 69 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELC------IS 69 (179)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHC-----CCCEEEEECCCCCCHHHHCCCCCCCCEEEEECCCCCEECHHHH------HH
T ss_conf 989995899860999999999974-----2871999418998577771876563212230465335150665------32
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHH-HHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 98068724876120320799999998-99985128889973888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPV-LDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~l-l~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
.++. ..+.......+ .......|||||+|+|++.+..+..++..+|.+++|++|+..++++++++++.
T Consensus 70 ~g~~-----------~~~~~~~~~~~~~~~~~~~~D~viiD~Ppg~~~~~~~al~~ad~~iiVttP~~~si~d~~r~i~l 138 (179)
T cd03110 70 CGLC-----------GKLVTEVRKHAKEIAKAEGAELIIIDGPPGIGCPVIASLTGADAALLVTEPTPSGLHDLERAVEL 138 (179)
T ss_pred CCCH-----------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 3517-----------68899999999998644379989981899975789999973994999819947899999999999
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99819876753899956589875200599999984895379906
Q gi|254780725|r 321 LKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIP 364 (427)
Q Consensus 321 l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP 364 (427)
+++.+. ++.+|+||++......-..+++.+.++.++.+.||
T Consensus 139 ~~~~~~---~~gvV~Nr~~~~~~~~~~i~~~~~~~~vp~LG~iP 179 (179)
T cd03110 139 VRHFGI---PVGVVINKYDLNDEIAEEIEDYCEEEGIPILGKIP 179 (179)
T ss_pred HHHCCC---CEEEEEECCCCCCCCHHHHHHHHHHHCCCEEEECC
T ss_conf 998299---78999968878876348999999980999898387
No 36
>KOG3022 consensus
Probab=99.95 E-value=2.9e-26 Score=180.67 Aligned_cols=232 Identities=20% Similarity=0.189 Sum_probs=176.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987898886318456124337653
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~ 236 (427)
....-++|+|.+.||||||||+++|||++||+ .+.+|.++|.|+...++..++|.+.+. +. .....+-++
T Consensus 43 l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~-~~---~~~~g~~Pv----- 112 (300)
T KOG3022 43 LSGVKHIILVLSGKGGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEV-VH---QSDNGWIPV----- 112 (300)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHC-CCCCEEEEEECCCCCCCHHHCCCCCCE-EE---ECCCCCEEE-----
T ss_conf 13454589998678877616899999999861-797179975035587705340877744-55---048874144-----
Q ss_pred HHCCCCCEEEEECCCCCC---CHHCC----CHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHHHHHCCC---CCCCCC
Q ss_conf 202489806872487612---03207----999999989998-5128889973888889899999862012---543578
Q gi|254780725|r 237 PVFYAENLSILTAPAMLS---RTYDF----DEKMIVPVLDIL-EQIFPLVILDVPHVWNSWTQEVLTLSDK---VVITTS 305 (427)
Q Consensus 237 l~~~~~gL~lL~a~~~~~---~~~~~----~~~~l~~ll~~l-~~~yd~VIiD~p~~~~~~~~~~L~~AD~---vviV~~ 305 (427)
....++.+++..--+. ....+ ...++.+++... ....||+|||+||+.++....+...+-. .++|++
T Consensus 113 --~~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTT 190 (300)
T KOG3022 113 --VVNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTT 190 (300)
T ss_pred --EECCCEEEEEEEEECCCCCCCCEEECHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCHHHHHEEECCCCCCCEEEEEC
T ss_conf --443876788756432888766265454788999999716887776779995899987014310000445573499817
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC--CCCCH-------HHHHHHHHHHCCCEEEEECCCHHHHHHHHHC
Q ss_conf 77688999999999999819876753899956589--87520-------0599999984895379906879999998847
Q gi|254780725|r 306 LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT--PKKPE-------ISISDFCAPLGITPSAIIPFDGAVFGMSANS 376 (427)
Q Consensus 306 p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~--~~~~~-------i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~ 376 (427)
|.-.++.++++-++++++.+. +-+.+|-||..- ++-.+ -..+++++.+|.+....||-|+.. .++.+.
T Consensus 191 PQ~vAl~Dv~K~i~fc~K~~I--~ilGvVENMs~f~Cp~C~~~~~iF~~gGg~~l~~~~glp~Lg~iPld~~i-~~~~d~ 267 (300)
T KOG3022 191 PQEVALQDVRKEIDFCRKAGI--PILGVVENMSGFVCPKCGHSTNIFGSGGGERLAEELGLPLLGSLPLDPLI-AESSDS 267 (300)
T ss_pred CHHHHHHHHHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCEECCCCCHHHHHHHCCCCEEEECCCCHHH-HHHCCC
T ss_conf 205566888865026664598--56888962555307887875533367628999987299757506788799-975348
Q ss_pred CCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 961898889998999999999998522
Q gi|254780725|r 377 GKMIHEVDPKSAIANLLVDFSRVLMGR 403 (427)
Q Consensus 377 G~pi~e~~p~s~~a~~~~~La~~i~gr 403 (427)
|+|+++..|.|+++++|.++++.|...
T Consensus 268 G~~~v~~~p~s~~~~af~~i~~~i~~~ 294 (300)
T KOG3022 268 GVPFVEEYPDSPASEAFEDIAEKLVEQ 294 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHHHHHHHH
T ss_conf 983476079956999999999999986
No 37
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.95 E-value=4.1e-26 Score=179.72 Aligned_cols=259 Identities=15% Similarity=0.216 Sum_probs=197.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|.|||+| |||.||||++.|++.+||. .|++|++|-+|+...++-+++|-...+++.|.++........-++..+.+.-
T Consensus 2 r~iAiYG-KGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~Gf 79 (278)
T COG1348 2 RQIAIYG-KGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTGF 79 (278)
T ss_pred CEEEEEC-CCCCCCCHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCCCHHHHEECCC
T ss_conf 3799962-7876731267789999997-2981799747987632777747866656999998618644588778212067
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHH------HHHCCCEEEECCCCC-CCHHHHHHHH--HCCCCCCCCCCCHHHHH
Q ss_conf 98068724876120320799999998999------851288899738888-8989999986--20125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDI------LEQIFPLVILDVPHV-WNSWTQEVLT--LSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~------l~~~yd~VIiD~p~~-~~~~~~~~L~--~AD~vviV~~p~~~slr 312 (427)
.|+.+.-++..... -......+..-++. .....|+|+.|+... .......-+. .||.+++|++.++.++.
T Consensus 80 ~gv~CVEsGGPepG-vGCAGRGVitai~~Le~lgaf~~~~DvviyDVLGDVVCGGFAmPiReg~AdeiyIVtSge~MalY 158 (278)
T COG1348 80 GGVKCVESGGPEPG-VGCAGRGVITAINLLEELGAFEEDLDVVIYDVLGDVVCGGFAMPIREGYADEIYIVTSGEMMALY 158 (278)
T ss_pred CCEEEEECCCCCCC-CCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECCCCEEECCEEEEHHCCCCCEEEEEECCCHHHHH
T ss_conf 85377425998999-88465119999999998187301287899953577347460002002666379999568358999
Q ss_pred HHHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHH
Q ss_conf 9999999999819--87675389995658987520059999998489537990687999999884796189888999899
Q gi|254780725|r 313 NSKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390 (427)
Q Consensus 313 ~a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a 390 (427)
.+.|+.+-+++.. .+.+.-.++.|+-+..... --.+.|++.+|.++.+.||+|. .+.+|..+|+++.|.+|.|..+
T Consensus 159 AANNI~kgi~k~a~~~~~rLgGiIcNsR~~~~e~-e~v~~fa~~igt~li~~vPr~~-ivq~aE~~~kTvie~~P~s~~a 236 (278)
T COG1348 159 AANNIAKGIRKYAKTGGVRLGGIICNSRSVDRER-ELVEAFAERLGTQLIHFVPRDN-IVQKAELNGKTVIEYAPDSNQA 236 (278)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHH-HHHHHHHHHHCCCEEEECCCHH-HHHHHHHCCCCHHHHCCCHHHH
T ss_conf 9889999999987337963145774577764379-9999999984885276335127-8899987486611318462489
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 99999999985221223211105899998742340
Q gi|254780725|r 391 NLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNMKC 425 (427)
Q Consensus 391 ~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~rk~ 425 (427)
+.|++||+.|.......-|+.-....|..++.+.+
T Consensus 237 ~~yr~LA~~I~~n~~~vip~pl~~eele~~~~~~~ 271 (278)
T COG1348 237 EEYRELAKKILENEKGVVPTPLSDEELEELLLEFG 271 (278)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHC
T ss_conf 99999999998377875678878789999999835
No 38
>pfam09140 MipZ ATPase MipZ. MipZ is an ATPase that forms a complex with the chromosome partitioning protein ParB near the chromosomal origin of replication. It is responsible for the temporal and spatial regulation of FtsZ ring formation.
Probab=99.94 E-value=1e-25 Score=177.32 Aligned_cols=209 Identities=14% Similarity=0.173 Sum_probs=129.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
+||+|.+.||||||||+|+|||.+||+ .|++|++||+|+|++++..+++-.... .+ ...++ ...+
T Consensus 1 hIIaVaNqKGGvGKTTtavnLA~aLA~-~G~rVllIDlDpqq~slt~~l~nr~~~--~~----~~~~~--------l~~P 65 (261)
T pfam09140 1 HVIVVGNEKGGSGKSTTAVHVAVALLY-LGARVATIDLDLRQRTLTRYIENRAAT--AE----RTGLD--------LPVP 65 (261)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHH--HH----HCCCC--------CCCC
T ss_conf 979997178987299999999999998-899789997999998512344303556--55----13865--------3466
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH----
Q ss_conf 9806872487612032079999999899985128889973888889899999862012543578776889999999----
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNL---- 317 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~l---- 317 (427)
....+..........+......+...+..+...|||||||||++.+..+.+++.+||.+++|.+++...+....++
T Consensus 66 ~~~~l~~~~~~~~~~~~~~~~~L~~al~~l~~~yDfIlIDcPPsl~~Lt~nAl~aAD~vIiPlq~sf~dld~L~~vd~~~ 145 (261)
T pfam09140 66 KHLCLPDDVSEVFDGESADDARLEEAVADLEQDADFIVIDTPGSDSPLSRLAHSRADTLVTPLNDSFVDFDLLGQVDPET 145 (261)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCEEEECCCHHHHHHHHHHHCCHHH
T ss_conf 53445506777613455789999999999875799999969985739999999983987632440155143352137034
Q ss_pred ---------HHHH---HHCCC--CCC--CCEEEEECCCCCC-CCHHH----HHHHHHHHCCCEEEEECCCHHHHHHHHHC
Q ss_conf ---------9999---98198--767--5389995658987-52005----99999984895379906879999998847
Q gi|254780725|r 318 ---------IDVL---KKLRP--ADK--PPYLVLNQVKTPK-KPEIS----ISDFCAPLGITPSAIIPFDGAVFGMSANS 376 (427)
Q Consensus 318 ---------l~~l---~~~~~--~~~--~~~iVlNr~~~~~-~~~i~----~~~~~~~lg~~~~~~IP~D~~~~~~A~~~ 376 (427)
.+.+ ++.+. +.. ...++-||...-. +.... .++..+.+|..+..-+ .+...|.+-.-.
T Consensus 146 ~~i~~~s~y~e~vw~~r~~ra~~~~~~idwivlrnRl~~~~~rnk~~~~~~l~~Ls~rigfr~~~g~-~eRviyRelfp~ 224 (261)
T pfam09140 146 FKVTRPSFYAEMVWEARKKRAQADRAPIDWIVLRNRLSTLEARNKRRVEDALNELSKRVGFRVAPGF-SERVIYRELFPR 224 (261)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC-CHHHHHHHHCCC
T ss_conf 3213621789999999998743689886479980562188878889999999999764075225774-313578776246
Q ss_pred CCCEEEECCC
Q ss_conf 9618988899
Q gi|254780725|r 377 GKMIHEVDPK 386 (427)
Q Consensus 377 G~pi~e~~p~ 386 (427)
|..+.+..+.
T Consensus 225 gltl~dl~~~ 234 (261)
T pfam09140 225 GLTLLDLKDL 234 (261)
T ss_pred CCCHHCCCCC
T ss_conf 7714118512
No 39
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.94 E-value=4.6e-25 Score=173.26 Aligned_cols=192 Identities=15% Similarity=0.162 Sum_probs=156.5
Q ss_pred HHHHHHHCCCCCC-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHH
Q ss_conf 9997631023322-234567537999746988775689999999999626994999978798986033438998789888
Q gi|254780725|r 142 IINSISAIFTPQE-EGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISD 220 (427)
Q Consensus 142 l~~ai~~~~~~~~-~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d 220 (427)
+.++++.+.+.-. ......+|+|.|+|+-.|.||||+|.|||..+|. .|++|+|||+|+..+.++.+|+.....|+.+
T Consensus 511 ~~Ea~R~lrt~l~~~~~~~~~kvi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~ 589 (726)
T PRK09841 511 AVEAVRALRTSLHFAMMETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEHGLSE 589 (726)
T ss_pred HHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHH
T ss_conf 999999999988875268888689997799999779999999999984-7995999828877710776159999987799
Q ss_pred HHCCCCCHHHHHHHHHHHCC-CCCEEEEECCC-CCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHHHHHHHHC
Q ss_conf 63184561243376532024-89806872487-612032079999999899985128889973888889-8999998620
Q gi|254780725|r 221 AIYPVGRIDKAFVSRLPVFY-AENLSILTAPA-MLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWTQEVLTLS 297 (427)
Q Consensus 221 ~l~~~~rlD~~~l~~~l~~~-~~gL~lL~a~~-~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~~~~L~~A 297 (427)
++.+...+++.. .+. .++|++|+++. .++..+.+....+..+++.++..|||||||+||... ..+..+...+
T Consensus 590 ~L~g~~~~~~~i-----~~~~~~~ldvl~aG~~p~nP~elL~s~~~~~ll~~l~~~yD~IIiDtPPvl~v~Da~~l~~~~ 664 (726)
T PRK09841 590 YLAGKDELNKVI-----QHFGKGGFDVITRGQVPPNPSELLMRDRMRQLLEWANDHYDLVIVDTPPMLAVSDAAVVGRSV 664 (726)
T ss_pred HHCCCCCHHHHC-----CCCCCCCEEEEECCCCCCCHHHHHCCHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHC
T ss_conf 838999889933-----027989989982899997989995876999999999813999999199965341599999978
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 12543578776889999999999998198767538999565898
Q gi|254780725|r 298 DKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 298 D~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
|.+++|+......-....+.++.+.+.+. +..++|+|.+...
T Consensus 665 D~~l~Vvr~g~T~~~~~~~a~~~l~~~~~--~v~G~vlN~v~~~ 706 (726)
T PRK09841 665 GTSLLVARFGLNTAKEVSLSMQRLEQAGV--NIKGAILNGVIKR 706 (726)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEEEEECCCCCC
T ss_conf 95999997996889999999999997899--7589998288656
No 40
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.94 E-value=1.3e-24 Score=170.42 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=166.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC---------------
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845---------------
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG--------------- 226 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~--------------- 226 (427)
+.|+|.|+|||+||||+++|||..|+. ..+++|+|+|....+.+++|+.+....-.......-
T Consensus 2 m~vAV~sGKGGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~~ 79 (284)
T COG1149 2 MQVAVASGKGGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCAE 79 (284)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHCC--CCCEEEEECCCCCCCCCEEECCCHHHHHHHHHHHCCCCCHHHCCCCCCHHH
T ss_conf 279996368877702289999998366--522477765778998616744501135677875046037577430172687
Q ss_pred --CHHHHHH-H--HH----HHCCCCCEEEEECCCC---------------------------CCCHHCCCHHHHHHHHHH
Q ss_conf --6124337-6--53----2024898068724876---------------------------120320799999998999
Q gi|254780725|r 227 --RIDKAFV-S--RL----PVFYAENLSILTAPAM---------------------------LSRTYDFDEKMIVPVLDI 270 (427)
Q Consensus 227 --rlD~~~l-~--~~----l~~~~~gL~lL~a~~~---------------------------~~~~~~~~~~~l~~ll~~ 270 (427)
+.+...+ + .. ...++-|...+..|.. ++-.+.-+..-+..+...
T Consensus 80 vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~~~~~g~~li~g~l~vGe~~s~~lV~~~kk~ 159 (284)
T COG1149 80 VCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKKH 159 (284)
T ss_pred HCCCCEEEECCCCCEECCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCCCCCCCHHHHHHHHH
T ss_conf 67888089737886002802026766333247876555432000389998768996368874467844451378999875
Q ss_pred HHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 85128889973888889899999862012543578776889999999999998198767538999565898752005999
Q gi|254780725|r 271 LEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 271 l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
..+..+++|||+|++.+....+++..+|.+++|++|+++++.+.+|+++.++.++.. ..+|+||++... . ..++
T Consensus 160 a~E~~~~~IIDsaaG~gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip---~~iViNr~~~g~-s--~ie~ 233 (284)
T COG1149 160 AKELADLLIIDSAAGTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIP---TGIVINRYNLGD-S--EIEE 233 (284)
T ss_pred HHHHCCEEEEECCCCCCCHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCC---EEEEEECCCCCC-H--HHHH
T ss_conf 565321258857997897177764168779998168852366899999999983995---499996677772-0--8999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 9998489537990687999999884796189888999899999999999852
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMG 402 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~g 402 (427)
+.+..|.++.+.||||... .++..+|.|+.+ +.++-+..+...+.++..
T Consensus 234 ~~~e~gi~il~~IPyd~~i-~~~~~~g~~~~~--~~~k~~~~~~~~~~~~~~ 282 (284)
T COG1149 234 YCEEEGIPILGEIPYDKDI-PEAYVNGEPFVE--PDSKEAEAILEEAEKLKE 282 (284)
T ss_pred HHHHCCCCEEEECCCCHHH-HHHHHCCCCCCC--CCCHHHHHHHHHHHHHHC
T ss_conf 8887399726878864258-999857885313--552688999999999870
No 41
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.94 E-value=1.3e-24 Score=170.53 Aligned_cols=228 Identities=18% Similarity=0.234 Sum_probs=174.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC-CC---HHHHHCC----CCCHH-----
Q ss_conf 79997469887756899999999996269949999787989860334389987-89---8886318----45612-----
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI-NS---ISDAIYP----VGRID----- 229 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~-~~---l~d~l~~----~~rlD----- 229 (427)
+|+|.| |||+||||+|+-|+..+..+.+.+|+.||.|+ ..+++..||++.+ .. ..+.++. ....+
T Consensus 2 kIaI~G-KGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAITG-KGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCCC
T ss_conf 699965-99765899999999999864895499994899-9990776299998755300899999986147899955300
Q ss_pred ------HHHHHHHHHCCCCCEEEEECCCCC---CCHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCHHHHHHHHHCCC
Q ss_conf ------433765320248980687248761---203207999999989998512-8889973888889899999862012
Q gi|254780725|r 230 ------KAFVSRLPVFYAENLSILTAPAML---SRTYDFDEKMIVPVLDILEQI-FPLVILDVPHVWNSWTQEVLTLSDK 299 (427)
Q Consensus 230 ------~~~l~~~l~~~~~gL~lL~a~~~~---~~~~~~~~~~l~~ll~~l~~~-yd~VIiD~p~~~~~~~~~~L~~AD~ 299 (427)
..+.+.++...+ .+.+|.-+..- ...+-.-...++.+++.+..+ |++||+|+-.+..+..+.....+|.
T Consensus 80 k~~~~~~di~~e~~~e~~-~~~LLvmGkie~~GeGC~Cp~~allR~~l~~l~~~~~e~VivDtEAGiEHfgRg~~~~vD~ 158 (255)
T COG3640 80 KENPLVSDLPDEYLVENG-DIDLLVMGKIEEGGEGCACPMNALLRRLLRHLILNRYEVVIVDTEAGIEHFGRGTIEGVDL 158 (255)
T ss_pred CCCCCHHHHHHHHHHHCC-CCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCHHHHCCCCCCCCCE
T ss_conf 137543351698850068-8007995255679974316278999999999751667489996334566656563257877
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCC
Q ss_conf 54357877688999999999999819876753899956589875200599999984895379906879999998847961
Q gi|254780725|r 300 VVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKM 379 (427)
Q Consensus 300 vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~p 379 (427)
+++|++|+.-|++.++++-++..+++ -.++.+|+|++... +......+..++.++.++||||++.+ ++...|.|
T Consensus 159 vivVvDpS~~sl~taeri~~L~~elg--~k~i~~V~NKv~e~---e~~~~~~~~~~~~~vlg~iP~d~~v~-~~dl~G~p 232 (255)
T COG3640 159 VIVVVDPSYKSLRTAERIKELAEELG--IKRIFVVLNKVDEE---EELLRELAEELGLEVLGVIPYDPEVV-EADLKGEP 232 (255)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHC--CCEEEEEEEECCCH---HHHHHHHHHCCCCEEEEECCCCHHHH-HCCCCCCC
T ss_conf 99995787788888999999998718--75499999503411---57777653227974899716987887-42256884
Q ss_pred EEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 89888999899999999999852
Q gi|254780725|r 380 IHEVDPKSAIANLLVDFSRVLMG 402 (427)
Q Consensus 380 i~e~~p~s~~a~~~~~La~~i~g 402 (427)
+.+. | ...+++.++++.|..
T Consensus 233 l~~~-~--~v~~~i~~I~~~l~~ 252 (255)
T COG3640 233 LNEE-P--EVLKEIEEIAERLIK 252 (255)
T ss_pred CCCC-H--HHHHHHHHHHHHHHH
T ss_conf 2123-5--557899999999985
No 42
>PRK11519 tyrosine kinase; Provisional
Probab=99.93 E-value=2.1e-24 Score=169.22 Aligned_cols=175 Identities=14% Similarity=0.177 Sum_probs=150.0
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 56753799974698877568999999999962699499997879898603343899878988863184561243376532
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
...+|+|.|+|+-.|.||||+|+|||..+|. .|+||+|||+|+..+.++.+|+.....|+.+++.+...++.. +
T Consensus 523 ~~~~~vi~vTS~~pgEGKSt~a~nLA~~~A~-~G~rvLLID~DlRrp~l~~~~~~~~~~GLs~~L~g~~~~~~~-----i 596 (720)
T PRK11519 523 QAQNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNVNGLSEILIGQGDITTA-----A 596 (720)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHCCCCCCCCHHHHCCCCCCHHHH-----C
T ss_conf 8887679997089999789999999999983-799199993877770167753999999859980799978997-----0
Q ss_pred HCC-CCCEEEEECCC-CCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 024-89806872487-612032079999999899985128889973888889-899999862012543578776889999
Q gi|254780725|r 238 VFY-AENLSILTAPA-MLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNS 314 (427)
Q Consensus 238 ~~~-~~gL~lL~a~~-~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a 314 (427)
.+. -++|++|+++. .++..+.+....+..+++.++..|||||||+||... ..+..+...+|.+++|+..........
T Consensus 597 ~~~~~~~l~vl~~G~~~pnp~elL~s~~~~~ll~~l~~~yD~IIiDtpPv~~v~Da~~la~~aD~~l~Vvr~g~t~~~~v 676 (720)
T PRK11519 597 KPTSIANFDLIPRGQVPPNPSELLMSERFAELVAWASKNYDLVLIDTPPILAVTDAAIVGRHVGTTLMVARYAVNTLKEV 676 (720)
T ss_pred CCCCCCCEEEECCCCCCCCHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHCCEEEEEEECCCCCHHHH
T ss_conf 35798998997699999498998387599999999985299999939996523589999997897999998995789999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 99999999819876753899956589
Q gi|254780725|r 315 KNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 315 ~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
...++.+.+.+. ...++|+|++..
T Consensus 677 ~~a~~~l~~~~~--~v~G~VlN~v~~ 700 (720)
T PRK11519 677 ETSLSRFEQNGI--PVKGVILNSIFR 700 (720)
T ss_pred HHHHHHHHHCCC--CEEEEEECCCCC
T ss_conf 999999996899--748999889766
No 43
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.93 E-value=1.5e-24 Score=170.03 Aligned_cols=171 Identities=23% Similarity=0.245 Sum_probs=147.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 75379997469887756899999999996269949999787989860334389987898886318456124337653202
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
..|.++|+|+..|.||||+|+|||+.+|+ .|+||+|||+|+..+.++.+||++...|+.+++.+...++.... ..
T Consensus 102 ~~~~LaItS~~pGEGKS~vAaNLA~~~Aq-~G~RvLLVDaDLRrP~lh~~f~l~~~~GLs~vL~g~~~l~~i~~----~~ 176 (274)
T TIGR03029 102 GRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKLSEQRGLSDILAGRSDLEVITH----IP 176 (274)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCHHHHHHCCCCCCCHHHHHCCCCCHHHEEE----CC
T ss_conf 88389996899999899999999999996-79919999588888447797599997687888459998899051----58
Q ss_pred CCCCEEEEECCCC-CCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 4898068724876-1203207999999989998512888997388888-9899999862012543578776889999999
Q gi|254780725|r 240 YAENLSILTAPAM-LSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-NSWTQEVLTLSDKVVITTSLDLAGLRNSKNL 317 (427)
Q Consensus 240 ~~~gL~lL~a~~~-~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-~~~~~~~L~~AD~vviV~~p~~~slr~a~~l 317 (427)
..++|++|+++.. ++..+.+....+..+++.++..||+||+|+||.. ...+..+...+|-+++|+..+....++.++.
T Consensus 177 ~~~nL~VLpaG~~ppnP~eLL~s~~~~~ll~~l~~~yD~IIiDTPPvl~~sDA~ila~~aDg~LlVvR~~~T~~~~l~~a 256 (274)
T TIGR03029 177 ALENLSVLPAGAIPPNPQELLARPAFTDLLNKVMGDYDVVIVDTPSAEHSSDAQIVATRARGTLIVSRVNETRLHELTSL 256 (274)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHH
T ss_conf 98997899699999897998735899999999984099999938986554349999986897999996898889999999
Q ss_pred HHHHHHCCCCCCCCEEEEEC
Q ss_conf 99999819876753899956
Q gi|254780725|r 318 IDVLKKLRPADKPPYLVLNQ 337 (427)
Q Consensus 318 l~~l~~~~~~~~~~~iVlNr 337 (427)
++.+++.+. +..++|+|+
T Consensus 257 ~~~L~~~g~--~VlGvVLNq 274 (274)
T TIGR03029 257 KEHLSGVGV--RVVGAVLNQ 274 (274)
T ss_pred HHHHHHCCC--CEEEEEECC
T ss_conf 999997799--668998487
No 44
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.93 E-value=1.2e-25 Score=176.92 Aligned_cols=133 Identities=23% Similarity=0.353 Sum_probs=111.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
||+|.|+||||||||+++|||.+||+ .|++|+++|+|+..+++
T Consensus 1 vi~v~sgKgGvGkt~~~~nLa~~la~-~G~~vll~D~D~g~an~------------------------------------ 43 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANL------------------------------------ 43 (139)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCC------------------------------------
T ss_conf 98996499998399999999999997-89969999898999657------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80687248761203207999999989998512888997388888989999986201254357877688999999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLK 322 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~ 322 (427)
+||||++|+|++.+..+..++..||.+++|++|++.|+.+++++++.+.
T Consensus 44 -------------------------------~~D~viiD~~aG~~~~~~~~~~~ad~~lvV~tpeptSi~DAYalIK~l~ 92 (139)
T cd02038 44 -------------------------------DYDYIIIDTGAGISDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLA 92 (139)
T ss_pred -------------------------------CCCEEEEECCCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHH
T ss_conf -------------------------------9999999489998778999999589579995897067999999999999
Q ss_pred HCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH----HCC--CEEEEEC
Q ss_conf 81987675389995658987520059999998----489--5379906
Q gi|254780725|r 323 KLRPADKPPYLVLNQVKTPKKPEISISDFCAP----LGI--TPSAIIP 364 (427)
Q Consensus 323 ~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~----lg~--~~~~~IP 364 (427)
+.. +...+++|+||+..++..+...+.|.+. |+. +..+.||
T Consensus 93 ~~~-~~~~~~lvvN~v~s~~ea~~~~~~l~~v~~kfL~v~l~~lG~IP 139 (139)
T cd02038 93 KQL-RVLNFRVVVNRAESPKEGKKVFKRLSNVSNRFLGLSLDYLGFIP 139 (139)
T ss_pred HHC-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECC
T ss_conf 963-99975999956899999999999999999998099831071485
No 45
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.92 E-value=1.3e-23 Score=164.37 Aligned_cols=202 Identities=23% Similarity=0.197 Sum_probs=159.0
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 56753799974698877568999999999962699499997879898603343899878988863184561243376532
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
....++|+|.++|||+||||+|+|||+++|+ .|++|+++|+|+...+.+.+|+.+...++.+.+.+.. +....
T Consensus 54 ~~~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~------~~~~~ 126 (265)
T COG0489 54 KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEA------LEPVI 126 (265)
T ss_pred CCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHCCCCCCCCCCCCCCCCC------CCCCE
T ss_conf 5666189997589987568999999999996-3993899967466986355408986556541137871------14322
Q ss_pred HCC-CCCEEEEECCCCC-CCHHCCCHHHHHHHHHHHHHC-CCEEEECCCCCCCHHHHHHHHH-CCCCCCCCCCCHHHHHH
Q ss_conf 024-8980687248761-203207999999989998512-8889973888889899999862-01254357877688999
Q gi|254780725|r 238 VFY-AENLSILTAPAML-SRTYDFDEKMIVPVLDILEQI-FPLVILDVPHVWNSWTQEVLTL-SDKVVITTSLDLAGLRN 313 (427)
Q Consensus 238 ~~~-~~gL~lL~a~~~~-~~~~~~~~~~l~~ll~~l~~~-yd~VIiD~p~~~~~~~~~~L~~-AD~vviV~~p~~~slr~ 313 (427)
... -+.++++.....+ .....+...++.+++..++.. |||||||+||+.......++.. .|-+++|++|.......
T Consensus 127 ~~~~~~~lsi~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~~~~~g~viVt~p~~~~~~~ 206 (265)
T COG0489 127 QHDGIKVLSILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIPDGVVIVTTPGKTALED 206 (265)
T ss_pred ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCEEEEEECCCCCHHHH
T ss_conf 02665504788328899894677633899999999745688889996999864277788751388599996677355999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCC--CCHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 99999999981987675389995658987--520059999998489537990687999
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPK--KPEISISDFCAPLGITPSAIIPFDGAV 369 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~--~~~i~~~~~~~~lg~~~~~~IP~D~~~ 369 (427)
+++.++.+++.+. .-+.+|.|+..... .++-..+.+.+.++ +....+|.+...
T Consensus 207 v~ka~~~~~~~~~--~vlGvv~Nm~~~~~~~~~~g~~~~~~~~~~-~~~g~~p~~~~~ 261 (265)
T COG0489 207 VKKAIDMLEKAGI--PVLGVVENMSYFICPRCGEGGGEKYAERYG-PYLGSIPLDPSA 261 (265)
T ss_pred HHHHHHHHHHCCC--CEEEEEECCCCCCCCCCCCCCHHHHHHHHC-CCCCCCCCCHHH
T ss_conf 9999999987499--347999668666665557885233566511-102668867454
No 46
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.92 E-value=6.6e-23 Score=159.99 Aligned_cols=251 Identities=18% Similarity=0.194 Sum_probs=182.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845-61243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l 237 (427)
...|+|||+| |||+||||++.|++.+||+ .|++|+.|-+|+...++.++|+-....++.|.+.... ..+...++..+
T Consensus 29 k~~~~IAiYG-KGGIGKSTts~NlsAAlA~-~GkkVm~IGCDPKaDSTrlLlgG~~~~TVLd~~~~~~~~~e~v~~~dv~ 106 (329)
T cd02033 29 KKTQIIAIYG-KGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGDVC 106 (329)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHCCCCCCCCHHHHHHHHCCCCCCCCCHHHEE
T ss_conf 4454999976-8843561688999999997-7996999788884603341058988840999998728864434250178
Q ss_pred HCCCCCEEEEEC-CCCCCC----HHCCCHHHHHHHHHHH---HHCCCEEEECCCCC-CCHHHHHHH--HHCCCCCCCCCC
Q ss_conf 024898068724-876120----3207999999989998---51288899738888-898999998--620125435787
Q gi|254780725|r 238 VFYAENLSILTA-PAMLSR----TYDFDEKMIVPVLDIL---EQIFPLVILDVPHV-WNSWTQEVL--TLSDKVVITTSL 306 (427)
Q Consensus 238 ~~~~~gL~lL~a-~~~~~~----~~~~~~~~l~~ll~~l---~~~yd~VIiD~p~~-~~~~~~~~L--~~AD~vviV~~p 306 (427)
.+. .|+...-+ +..+.. ..-+.. + .+++.+ ...+|||+.|+-.. .......-+ ..|++|++|+..
T Consensus 107 ~~g-~Gv~CvEsGGPEPGvGCAGRGIIta--i-~lLe~lg~~~~d~D~V~yDVLGDVVCGGFAmPiR~g~A~evyIVtSg 182 (329)
T cd02033 107 FKR-DGVFAMELGGPEVGRGCGGRGIIHG--F-ELLEKLGFHDWDFDYVLLDFLGDVVCGGFGLPIARDMAQKVIVVGSN 182 (329)
T ss_pred ECC-CCEEEEECCCCCCCCCCCCCCHHHH--H-HHHHHCCCCCCCCCEEEEECCCCEEECCCCCCCCCCCCCEEEEEECC
T ss_conf 625-9988986679999876788730136--6-78776377525899999922453566463353356876289999678
Q ss_pred CHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEE
Q ss_conf 768899999999999981---98767538999565898752005999999848953799068799999988479618988
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKL---RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEV 383 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~---~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~ 383 (427)
+..|+..+.|+.+-+... +.+.+.-.+|+|+-+.. .+ .+.|++.+|.++.+.||.|..+...+.+ .+++ .
T Consensus 183 E~MalyAANNI~~~i~~~a~~gg~vrl~GlI~N~~~~~--~e--~e~fa~~~g~~~l~~vP~d~~iRr~~~~-y~iv--~ 255 (329)
T cd02033 183 DLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDGT--GE--AQAFAAHAGIPILAAIPADEELRRKSAA-YQIV--G 255 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCC--HH--HHHHHHHCCCCEEEECCCCHHHHHHHHH-CCCC--C
T ss_conf 08899988789999999986389710115986068872--49--9999997199579963787788765430-2603--4
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 8999899999999999852212232111058999987423
Q gi|254780725|r 384 DPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 384 ~p~s~~a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
.|.++.+..|++||..|...+. ..|+.--...|..||+-
T Consensus 256 ~p~~~~~~~f~~LA~~i~~~~p-~~P~pl~~deL~~Lf~~ 294 (329)
T cd02033 256 RPGTTWGPLFEQLATNVAEAPP-MRPKPLSQDELLGLFSS 294 (329)
T ss_pred CCCCHHHHHHHHHHHHHHHCCC-CCCCCCCHHHHHHHHCC
T ss_conf 8761589999999997612798-77899898999876354
No 47
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.91 E-value=5.6e-23 Score=160.45 Aligned_cols=194 Identities=22% Similarity=0.229 Sum_probs=151.0
Q ss_pred CCCCCH-HHHHHHHHH-CCC-CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC
Q ss_conf 189998-999997631-023-32223456753799974698877568999999999962699499997879898603343
Q gi|254780725|r 134 IEPLSV-ADIINSISA-IFT-PQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF 210 (427)
Q Consensus 134 ~~P~~~-~~l~~ai~~-~~~-~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l 210 (427)
..|.++ .|-.+.++. +.. .......+.+|+|.|+|+..|.||||+|.|||.++|+..+++|+|||+|+..++++.+|
T Consensus 5 ~~P~s~~aEa~R~lRt~l~~~~~~~~~~~~~kvi~VTS~~pgeGKTtva~nLA~~lA~~~~~~VLLVDaDlr~p~l~~~l 84 (207)
T TIGR03018 5 NSPRSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTL 84 (207)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHC
T ss_conf 89999899999999998766410103467880999978999998899999999999972498599995357899710013
Q ss_pred CCCCCCCHHHHHCCCC-CHHHHHHHHHHHCC-CCCEEEEECCCCCCC-HHCCCHHHHHHHHHHHHHCCC--EEEECCCCC
Q ss_conf 8998789888631845-61243376532024-898068724876120-320799999998999851288--899738888
Q gi|254780725|r 211 DKDPINSISDAIYPVG-RIDKAFVSRLPVFY-AENLSILTAPAMLSR-TYDFDEKMIVPVLDILEQIFP--LVILDVPHV 285 (427)
Q Consensus 211 ~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~~-~~gL~lL~a~~~~~~-~~~~~~~~l~~ll~~l~~~yd--~VIiD~p~~ 285 (427)
+.++..|+.|.+.+.. .++.. +.+. .++|++++++..... .+.+....+..+++.+++.|| |||||+||.
T Consensus 85 ~~~~~~Gl~d~L~~~~~~l~~~-----i~~~~~~~l~vlpag~~~~~~~~ll~s~~~~~li~~lr~~yd~~~VIiDtPPv 159 (207)
T TIGR03018 85 GLEAEPGLSDCLLDPVLDLADV-----LVPTNIGRLSLLPAGRRHPNPTELLASQRMRSLLHELARRYPDRIIIIDTPPL 159 (207)
T ss_pred CCCCCCCHHHHHCCCCCCHHHH-----EECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 8899998567743899875672-----34268875557516898996676542699999999999737965799838962
Q ss_pred CC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 89-8999998620125435787768899999999999981987675389995
Q gi|254780725|r 286 WN-SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 286 ~~-~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
.. ..+..+...+|-+++|+.......+...+.++.|+. ..-+++|+|
T Consensus 160 l~~~Da~~la~~~D~vllVvr~~~t~~~~v~~a~~~L~~----~~vlG~VlN 207 (207)
T TIGR03018 160 LVFSEARALARLVGQIVLVVEEGRTTQEAVKEALSALES----CKVLGVVLN 207 (207)
T ss_pred CCCHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHCC----CCEEEEEEC
T ss_conf 232369999996896999997998789999999998668----980699969
No 48
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein; InterPro: IPR005971 Synonym: dark protochlorophyllide reductase Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. The light-independent (dark) form of protochlorophyllide reductase plays a key role in the ability of gymnosperms, algae, and photosynthetic bacteria to form chlorophyll in the dark. Genetic and sequence analyses have indicated that dark protochlorophyllide reductase consists of three protein subunits that exhibit significant sequence similarity to the three subunits of nitrogenase, which catalyzes the reductive formation of ammonia from dinitrogen. Dark protochlorophyllide reductase activity was shown to be dependent on the presence of all three subunits, ATP, and the reductant dithionite. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulphur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase . ; GO: 0005524 ATP binding, 0016730 oxidoreductase activity acting on iron-sulfur proteins as donors, 0015995 chlorophyll biosynthetic process, 0019685 photosynthesis dark reaction.
Probab=99.91 E-value=3.5e-23 Score=161.69 Aligned_cols=256 Identities=14% Similarity=0.174 Sum_probs=196.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-CHHHHHHHHHHHCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845-61243376532024
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-RIDKAFVSRLPVFY 240 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-rlD~~~l~~~l~~~ 240 (427)
+++||+| |||+||||+++||+.+||+ .|+|||=|-|||-+ |....|--.-.+|+.|+|..-+ +.++..-+..+-+.
T Consensus 1 ~~lAvYG-KGGiGKSTTssNLSvA~A~-~GkkVlQIGCDPKh-DSTFTLtg~L~PTvidvL~~~~yH~E~v~~eD~iy~G 77 (275)
T TIGR01281 1 MILAVYG-KGGIGKSTTSSNLSVALAK-KGKKVLQIGCDPKH-DSTFTLTGKLIPTVIDVLDAVNYHYEDVEPEDVIYTG 77 (275)
T ss_pred CEEEEEC-CCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCC-CCCCCCCCCCCCCEEEECCCCCCCEEECCCCCEEEEC
T ss_conf 9688863-8887700467899999984-69918985257888-8774544741674644225676303103337877834
Q ss_pred CCCEEEEECCCCCCCHH---CCCHHHHHHHHHHH--HHCCCEEEEC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHH
Q ss_conf 89806872487612032---07999999989998--5128889973-888889899999862012543578776889999
Q gi|254780725|r 241 AENLSILTAPAMLSRTY---DFDEKMIVPVLDIL--EQIFPLVILD-VPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNS 314 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~---~~~~~~l~~ll~~l--~~~yd~VIiD-~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a 314 (427)
=.|++++-++..|.-.- .+=.+. -.||+.+ -+.||+||.| ++........+-|..||.-+||+.-|..||-.|
T Consensus 78 Y~GVd~vEaGGPPAGsGCGGYVVGeT-VKLLke~~~~~~yDVilFDVLGDVVCGGFAaPL~YAd~aLvva~NDFDalFAA 156 (275)
T TIGR01281 78 YGGVDCVEAGGPPAGSGCGGYVVGET-VKLLKELDVLDEYDVILFDVLGDVVCGGFAAPLQYADYALVVAANDFDALFAA 156 (275)
T ss_pred CCCEEEEECCCCCCCCCCCCEEECCH-HHHHHHCCHHHHCCEEEEEECCCEEECCCCCHHHHHCCEEEEECCCCHHHHHH
T ss_conf 68568871473689888987471522-45566526334289799962575551754641123212566610772178999
Q ss_pred HHHHHHHHHC--C-CCCCCCEEEEECCCCC-CCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC---
Q ss_conf 9999999981--9-8767538999565898-7520059999998489537990687999999884796189888999---
Q gi|254780725|r 315 KNLIDVLKKL--R-PADKPPYLVLNQVKTP-KKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--- 387 (427)
Q Consensus 315 ~~ll~~l~~~--~-~~~~~~~iVlNr~~~~-~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--- 387 (427)
+|+...+++. + +.-+--.+|-||+... ..+.--.+.|.+..+.++...+|+- +.+++|--.|.++.|+.+..
T Consensus 157 NRia~av~~K~~~Gy~vkLAGiIaNR~~~~yGGGtdlle~F~~~~~~~~l~~~P~~-d~IR~SRl~g~TlFEmee~~p~~ 235 (275)
T TIGR01281 157 NRIAAAVREKAKSGYDVKLAGIIANRVDKEYGGGTDLLEKFAERVGTPVLGVVPRL-DEIRRSRLKGKTLFEMEESGPEL 235 (275)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEECCCCCCCCCCCCHHHHHHHHCCCCEEEECCCH-HHCCHHHHCCCCEEECCCCCCCH
T ss_conf 99999999984179707873266312113117871568999986288322007771-11020101586123015899658
Q ss_pred -HHHHHHHHHHHHHHCC-CCCCCCCCCHHHHHHHHHH
Q ss_conf -8999999999998522-1223211105899998742
Q gi|254780725|r 388 -AIANLLVDFSRVLMGR-VTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 388 -~~a~~~~~La~~i~gr-~~~~~~k~~~~~~l~~lf~ 422 (427)
...+.|.+||+.|..+ ++..-|+...--.+..||+
T Consensus 236 ~~~~~~y~~~A~~LL~~Gp~~~vp~~~~dR~~F~ll~ 272 (275)
T TIGR01281 236 EEVTAEYLKMAEYLLAKGPEGVVPKPLADREIFELLG 272 (275)
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHC
T ss_conf 8999999999999986388973677410158998734
No 49
>TIGR01007 eps_fam capsular exopolysaccharide family; InterPro: IPR005702 This family describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis (EPS). At least 13 genes EpsA to EpsM in streptococcus species seem to direct the EPS proteins and share high homology. ; GO: 0030234 enzyme regulator activity, 0045227 capsule polysaccharide biosynthetic process.
Probab=99.90 E-value=5.5e-23 Score=160.48 Aligned_cols=178 Identities=21% Similarity=0.251 Sum_probs=151.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCC-CCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7537999746988775689999999999626994999978798986033438998-789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDP-INSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~-~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
.=|+++|.|.|-|-||||+.+|+||++|+ .|.||||||.|+..++....|+..- ..||.+.|.+...+.+..-+.
T Consensus 18 e~K~l~itS~~~~eGKsT~S~NiA~~fAq-aGyKTLlIDgD~R~sv~~~~Fk~~n~~~GLtn~L~g~~dl~~~i~~T--- 93 (207)
T TIGR01007 18 EIKVLLITSVKAGEGKSTTSANIAVSFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKIKGLTNFLSGNTDLSDAICET--- 93 (207)
T ss_pred CEEEEEEEECCCCCCCEEEEHHHHHHHHH-CCCEEEEEECCCCCCCEEEEECCCCCCCCCHHHHCCCCCHHHHHHCC---
T ss_conf 70589984110588862410788999985-68558887546586603678658887656333221454533342026---
Q ss_pred CCCCCEEEEEC-CCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH-HHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 24898068724-8761203207999999989998512888997388888989999-986201254357877688999999
Q gi|254780725|r 239 FYAENLSILTA-PAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQE-VLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 239 ~~~~gL~lL~a-~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~-~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
+.+++|.++++ |-.|...+.+....|..+++.++..|||||||+||.-.-.-.+ ....+|..++|+...--.=+..+.
T Consensus 94 ~isenL~vi~sG~vPPNPt~LL~s~~F~~l~e~~~~~fD~iiiDTPPig~V~DAai~a~~~d~~~LV~~A~~~~k~~v~K 173 (207)
T TIGR01007 94 NISENLDVITSGPVPPNPTELLQSSNFKTLIETLRKYFDYIIIDTPPIGTVIDAAIIARAVDASILVTDAGKIKKREVKK 173 (207)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHCCEEEEEECCCCCHHHHHH
T ss_conf 54678727517887877547888899999999987168889995188666788999998729779887225326467899
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 999999819876753899956589875
Q gi|254780725|r 317 LIDVLKKLRPADKPPYLVLNQVKTPKK 343 (427)
Q Consensus 317 ll~~l~~~~~~~~~~~iVlNr~~~~~~ 343 (427)
..+.|++.+ ..-+++|||+++..+.
T Consensus 174 AK~~LEq~G--~~~LGvvLNK~d~s~~ 198 (207)
T TIGR01007 174 AKEQLEQAG--SKFLGVVLNKVDISVD 198 (207)
T ss_pred HHHHHHHHC--CCEEEEEECCCCCCCC
T ss_conf 999998617--8411588888257655
No 50
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.90 E-value=1.2e-22 Score=158.38 Aligned_cols=157 Identities=25% Similarity=0.276 Sum_probs=121.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
||+|.++||||||||+++|||.+|++ .|++|+++|+|....+...++ +
T Consensus 1 vi~v~s~kggvgkst~~~~la~~l~~-~g~~v~~~d~di~gpsip~~~------------r------------------- 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPSIPKMW------------R------------------- 48 (169)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCCCCCCEEE------------E-------------------
T ss_conf 98997499988199999999999998-799789997137999755012------------0-------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHH-HHHHHCCCEEEECCCCCCCHHHHHHH--HHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 80687248761203207999999989-99851288899738888898999998--6201254357877688999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVL-DILEQIFPLVILDVPHVWNSWTQEVL--TLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll-~~l~~~yd~VIiD~p~~~~~~~~~~L--~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
+| .....+.+++ +.....+||+|||+|++.++....+. ..+|.+++|++|+..|+.++++.++
T Consensus 49 ------Gp--------~~~~~i~q~l~~~~w~~lDyLIID~PPGtgD~~lt~~~~~~~d~~IvVTTP~~~s~~Da~r~i~ 114 (169)
T cd02037 49 ------GP--------MKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAID 114 (169)
T ss_pred ------CH--------HHHHHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHH
T ss_conf ------47--------3899999999852546678899968999870778798750567479994695889999999999
Q ss_pred HHHHCCCCCCCCEEEEECCCC--C---CC----CHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 999819876753899956589--8---75----200599999984895379906879
Q gi|254780725|r 320 VLKKLRPADKPPYLVLNQVKT--P---KK----PEISISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 320 ~l~~~~~~~~~~~iVlNr~~~--~---~~----~~i~~~~~~~~lg~~~~~~IP~D~ 367 (427)
++++.+. ..+.+|.||... + ++ ++-..+++++.++.+..+.||.||
T Consensus 115 ~~~~~~i--~i~GvVeNMs~~~c~~c~~~~~ifg~~~~~~la~~~~i~~Lg~IP~dp 169 (169)
T cd02037 115 MFKKVNI--PILGVVENMSYFVCPHCGKKIYIFGKGGGEKLAEELGVPLLGKIPLDP 169 (169)
T ss_pred HHHHCCC--CEEEEEECCCCCCCCCCCCEEECCCCCHHHHHHHHHCCCEEEECCCCC
T ss_conf 9997599--707999879666079999735278884499999995999898728999
No 51
>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.
Probab=99.90 E-value=3.4e-21 Score=149.49 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=136.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
++|+|.+.|||+||||++.|||.+++. .|++|+++|+|+|.. +..+. +.-...+..+
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~V~liD~Dpq~s-~~~W~---------~~a~~~~~~~------------ 58 (231)
T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALAS-DGKRVALFEADENRP-LTKWR---------ENALRKGTWD------------ 58 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCC-HHHHH---------HHHHHCCCCC------------
T ss_conf 379996179986599999999999996-899599996899868-89999---------9876468888------------
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9806872487612032079999999899985-128889973888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
+...+... .....+...++.+. ..|||||||+|+..+.++..++..||.|+++++|+...+..+.+.+++
T Consensus 59 ~~~~v~~~---------~~~~~l~~~~~~~~~~~yD~VIIDtpg~~s~~~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~ 129 (231)
T pfam07015 59 PACEIFNA---------DELPLLEQAYEHAEGSGFDYALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIDEALATYRY 129 (231)
T ss_pred CCCCEECC---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 76522205---------660158999998865799989983998575899999997898997789982339999999999
Q ss_pred HHHC---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCCEEEECCCC------HHH
Q ss_conf 9981---98767538999565898752005999999848-9537990687999999884796189888999------899
Q gi|254780725|r 321 LKKL---RPADKPPYLVLNQVKTPKKPEISISDFCAPLG-ITPSAIIPFDGAVFGMSANSGKMIHEVDPKS------AIA 390 (427)
Q Consensus 321 l~~~---~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg-~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s------~~a 390 (427)
+.+. ...+-+..++++|+... +.......+.+.++ .+++-+--.+...|......|....+....+ +.+
T Consensus 130 i~~~~~~~~~~ip~avl~tRv~~~-~~~~~~~~i~e~le~lpvl~t~i~eR~AF~~if~~G~l~~~l~~~~~~~~~~~a~ 208 (231)
T pfam07015 130 VIELLLTENLAIPTAILRQRVPVG-RLTSSQRFCSDMLEQLPVFDCPMHERDAFAAMKERGMLHITLENLSQIPSMRLAL 208 (231)
T ss_pred HHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHH
T ss_conf 999999737899803345511400-0217899999999649854354202899999998046200026877785112899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999985
Q gi|254780725|r 391 NLLVDFSRVLM 401 (427)
Q Consensus 391 ~~~~~La~~i~ 401 (427)
+.++.+++.+.
T Consensus 209 ~n~~~~~~e~~ 219 (231)
T pfam07015 209 RNLRTAMEDLD 219 (231)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999
No 52
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.88 E-value=6.3e-21 Score=147.84 Aligned_cols=185 Identities=13% Similarity=0.101 Sum_probs=122.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
++|+|.+.|||+||||+|.|||.++++ .|.+|+++|+|+|. ++..+.. .....+.. .
T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~v~~iD~Dpq~-s~~~W~e---------~a~~~~~~------------~ 58 (231)
T PRK13849 2 KLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENR-PLTRWKE---------NALRSNTW------------D 58 (231)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-CHHHHHH---------HHHHCCCC------------C
T ss_conf 379996189987699999999999997-89959999689986-8899998---------76525898------------8
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 980687248761203207999999989998-5128889973888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
+...+... .....+....+.. .+.|||||||+|+..+.+...++..||.|+|+++|+...++.+.+.+++
T Consensus 59 ~~~~v~~~---------~~~~~l~~~~e~~~~~~~D~VIIDtpg~~s~~~~~Ai~~ADLVLIP~qPSp~D~~~a~~tv~~ 129 (231)
T PRK13849 59 PACEVYAA---------DELPLLEAAYEDAELQGFDYALADTHGGSSELNNTIIASSNLLLIPTMLTPLDIDEALSTYRY 129 (231)
T ss_pred CCCCEEEC---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH
T ss_conf 77523405---------652578999988753699889981899775899999997898997799986679999999999
Q ss_pred HHHC---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCC
Q ss_conf 9981---98767538999565898752005999999848-95379906879999998847961
Q gi|254780725|r 321 LKKL---RPADKPPYLVLNQVKTPKKPEISISDFCAPLG-ITPSAIIPFDGAVFGMSANSGKM 379 (427)
Q Consensus 321 l~~~---~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg-~~~~~~IP~D~~~~~~A~~~G~p 379 (427)
+.+. .-.+-+..+++||+.... ..-..+.+.+.+. .+++-+--.+...|.+=...|..
T Consensus 130 i~~~~~~~~~~ip~~vlltRv~a~~-~t~~~~~i~~~le~lPvl~T~i~eR~Af~~i~~~G~L 191 (231)
T PRK13849 130 VIELLLSENLAIPTAILRQRVPVGR-LTTSQRAMSDMLESLPVVDSPMHERDAFAAMKERGML 191 (231)
T ss_pred HHHHHHHHCCCCCEEEEEEECCHHH-HCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCH
T ss_conf 9999997287886566654050454-0688999999996299555530227999999983514
No 53
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.87 E-value=4.5e-21 Score=148.76 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=113.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHH--HH---HCCCCCHHHH-HHHH
Q ss_conf 3799974698877568999999999962699499997879898603343899878988--86---3184561243-3765
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSIS--DA---IYPVGRIDKA-FVSR 235 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~--d~---l~~~~rlD~~-~l~~ 235 (427)
|+| |+++||||||||+|+|+|..||+ .|+||+|||.|++ .+++-.||.+...+.. +. +... .+|.. .++.
T Consensus 1 r~i-~~~GKGGVGKTT~AaalA~~lA~-~G~kVLlvstDPa-hsLsd~f~~~~~~~~~~v~~~~nL~a~-eid~~~~~~~ 76 (254)
T cd00550 1 RYI-FFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAM-EIDPQEALEE 76 (254)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CCHHHHHCCCCCCCCCEECCCCCCEEE-EECHHHHHHH
T ss_conf 989-99689855489999999999996-8994999958986-448898488667887110366884578-7288999999
Q ss_pred HHHCCCCCEEEEECCCCCCCH-------HCC-CHHHHHHHHHHHH-HCCCEEEECCCCCC-----------CHHHHHHHH
Q ss_conf 320248980687248761203-------207-9999999899985-12888997388888-----------989999986
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRT-------YDF-DEKMIVPVLDILE-QIFPLVILDVPHVW-----------NSWTQEVLT 295 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~-------~~~-~~~~l~~ll~~l~-~~yd~VIiD~p~~~-----------~~~~~~~L~ 295 (427)
......+.+.-...+...+.. ..+ ..-.+..+++.+. ..||+||+||||.- -.|....|.
T Consensus 77 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~L~ 156 (254)
T cd00550 77 YRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILS 156 (254)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHCC
T ss_conf 99999998863225566888899986398589999999999997606998899889985679987515699999998537
Q ss_pred H--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCH------------HHHHHHHHHHCCCEEE
Q ss_conf 2--0125435787768899999999999981987675389995658987520------------0599999984895379
Q gi|254780725|r 296 L--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPE------------ISISDFCAPLGITPSA 361 (427)
Q Consensus 296 ~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~------------i~~~~~~~~lg~~~~~ 361 (427)
. ...+++|++|+..++..++|++..++..+.+. ..+|+||+-++.... --.+++++.++-.+..
T Consensus 157 d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v--~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~v~ 234 (254)
T cd00550 157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV--DAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA 234 (254)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 95655899997787216999999999999779998--9799958808776889999999999999999999870589679
Q ss_pred EECC
Q ss_conf 9068
Q gi|254780725|r 362 IIPF 365 (427)
Q Consensus 362 ~IP~ 365 (427)
.+|.
T Consensus 235 ~vp~ 238 (254)
T cd00550 235 KLPL 238 (254)
T ss_pred EECC
T ss_conf 8157
No 54
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.85 E-value=1.1e-20 Score=146.35 Aligned_cols=171 Identities=19% Similarity=0.229 Sum_probs=96.6
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCC-CCCHHH-HHHHHHHHCCC
Q ss_conf 9997469887756899999999996269949999787989860334389987898886318-456124-33765320248
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYP-VGRIDK-AFVSRLPVFYA 241 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~-~~rlD~-~~l~~~l~~~~ 241 (427)
|.|+++||||||||+|+|+|.++|+ .|+||++||+|++.+..... ..++.+.... ....+. ....+......
T Consensus 1 i~~~sGKGGVGKTTvAaalA~~lA~-~G~rvLlvs~DPah~l~d~~-----~~~L~~~~~~~~~e~~~~~~~~~v~~~~~ 74 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKG-----LPNLSDAFIVEDPEIAPNLYREEVDATRR 74 (217)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9899789966199999999999996-89949999589876653234-----79865135888766679999875016665
Q ss_pred CCEEEEECCC---CCC-CHHCCCH-HHHHHHHHHH-HHCCCEEEECCCCCCCH---HHHHHHHHCC--CCCCCCCCCHHH
Q ss_conf 9806872487---612-0320799-9999989998-51288899738888898---9999986201--254357877688
Q gi|254780725|r 242 ENLSILTAPA---MLS-RTYDFDE-KMIVPVLDIL-EQIFPLVILDVPHVWNS---WTQEVLTLSD--KVVITTSLDLAG 310 (427)
Q Consensus 242 ~gL~lL~a~~---~~~-~~~~~~~-~~l~~ll~~l-~~~yd~VIiD~p~~~~~---~~~~~L~~AD--~vviV~~p~~~s 310 (427)
.......... ... ....+.+ -.+..+.+.+ ...|||||+|+||.-.. .....|...+ .+++|++|+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~pg~~E~~~l~~~~~~~~~~~yD~IVvDtpPTGhtlrlL~~~~L~d~~~t~~~lVt~Pe~~~ 154 (217)
T cd02035 75 VERAWGGEGGLMLELAAALPGIEELASLLAVFREFSEGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLP 154 (217)
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCCH
T ss_conf 33311001145677761599789999999999998548998899828985569998678872488876799995776217
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99999999999981987675389995658987
Q gi|254780725|r 311 LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 311 lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
+.+++|++..++..+.+ ...+|+||+-++.
T Consensus 155 ~~et~r~~~~L~~~gi~--v~~vVvN~v~p~~ 184 (217)
T cd02035 155 LYETERAITELALYGIP--VDAVVVNRVLPAE 184 (217)
T ss_pred HHHHHHHHHHHHHCCCC--CCEEEEECCCCCC
T ss_conf 99999999999977998--8989895882787
No 55
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.85 E-value=1.5e-20 Score=145.52 Aligned_cols=101 Identities=28% Similarity=0.388 Sum_probs=89.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
+|+|.+.||||||||++.|||..+++ .|.+|+++|+|+|
T Consensus 1 vi~~~n~KGGvGKtt~~~~la~~~a~-~g~~vl~iD~DpQ---------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ---------------------------------------- 39 (104)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC----------------------------------------
T ss_conf 99997389987689999999999997-7992999977988----------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH-
Q ss_conf 8068724876120320799999998999851288899738888898999998620125435787768899999999999-
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL- 321 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l- 321 (427)
|||||+|+|+..+..+..++..||.+++|+.|+..+++...++++.+
T Consensus 40 --------------------------------yD~iiIDtpp~~~~~~~~al~~aD~viiP~~p~~~~~~~~~~~~~~~~ 87 (104)
T cd02042 40 --------------------------------YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLETLI 87 (104)
T ss_pred --------------------------------CCEEEEECCCCCCHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHHHHH
T ss_conf --------------------------------888999794999899999999789999983698899999999999999
Q ss_pred --HHCCCCCCCCEEEEE
Q ss_conf --981987675389995
Q gi|254780725|r 322 --KKLRPADKPPYLVLN 336 (427)
Q Consensus 322 --~~~~~~~~~~~iVlN 336 (427)
+..++......+|+|
T Consensus 88 ~~~~~~~~~~~~~~v~~ 104 (104)
T cd02042 88 LEDRLNPDLDILGILPT 104 (104)
T ss_pred HHHHHCCCCEEEEEEEC
T ss_conf 99976999889999809
No 56
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X; InterPro: IPR010246 This entry represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase , . This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or 'iron' protein.; GO: 0005524 ATP binding, 0016628 oxidoreductase activity acting on the CH-CH group of donors NAD or NADP as acceptor, 0051539 4 iron 4 sulfur cluster binding, 0015979 photosynthesis, 0030494 bacteriochlorophyll biosynthetic process.
Probab=99.82 E-value=9.2e-19 Score=134.54 Aligned_cols=229 Identities=19% Similarity=0.220 Sum_probs=161.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCC---CCHHHH-----HH
Q ss_conf 3799974698877568999999999962699499997879898603343899878988863184---561243-----37
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPV---GRIDKA-----FV 233 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~---~rlD~~-----~l 233 (427)
|+|||+| |||.|||.+.+||...||. .++|||++-|||..-+++.+||-..-+|+.|+...- .|-+++ .+
T Consensus 1 r~iAiYG-KGG~GKSFtttNLs~~~A~-mgkRVL~lGCDPKhDst~~LFGGislPT~~ev~~ekk~agreEev~~~dv~F 78 (355)
T TIGR02016 1 RIIAIYG-KGGIGKSFTTTNLSAKLAL-MGKRVLQLGCDPKHDSTSALFGGISLPTVIEVFAEKKEAGREEEVKVSDVVF 78 (355)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-HCCCEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEEE
T ss_conf 9588974-8898667898999999997-4682354057897332221367866750889999986518732056611787
Q ss_pred HHHHHCCCCCEEEEEC-CCCC----CCHHCCCHHHHHHHHHHHHHCCCEEEEC-CCCC-----CCHHHHHHHHHCCCCCC
Q ss_conf 6532024898068724-8761----2032079999999899985128889973-8888-----89899999862012543
Q gi|254780725|r 234 SRLPVFYAENLSILTA-PAML----SRTYDFDEKMIVPVLDILEQIFPLVILD-VPHV-----WNSWTQEVLTLSDKVVI 302 (427)
Q Consensus 234 ~~~l~~~~~gL~lL~a-~~~~----~~~~~~~~~~l~~ll~~l~~~yd~VIiD-~p~~-----~~~~~~~~L~~AD~vvi 302 (427)
++.+...+..++=+-- +... .-.--+..-.+.+=+....=.+|||++| ++.. -.+.++. .|.+|+|
T Consensus 79 k~~I~~~~~~vyg~ElGGPeVGRGCGGRGIi~GFd~LEKlG~~~W~~D~vlmDFLGDVVCGGFatPlaRs---laeeVi~ 155 (355)
T TIGR02016 79 KRDIMNFAATVYGIELGGPEVGRGCGGRGIIFGFDLLEKLGLFEWELDFVLMDFLGDVVCGGFATPLARS---LAEEVIV 155 (355)
T ss_pred ECCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCCHHHEEEECCCCEEECCCCCHHHHH---HHCCEEE
T ss_conf 2336889874578881787115546875310102566552744000200020005867756644312353---2024377
Q ss_pred CCCCCHHHHHHHHHHHH---HHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH--HHHHHCC
Q ss_conf 57877688999999999---999819876753899956589875200599999984895379906879999--9988479
Q gi|254780725|r 303 TTSLDLAGLRNSKNLID---VLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVF--GMSANSG 377 (427)
Q Consensus 303 V~~p~~~slr~a~~ll~---~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~--~~A~~~G 377 (427)
++.-|..||..++|+.+ ++++++.+.+-..+|+||=+- .=..+.|++.++.++.+.||+|.++. ..+-.-.
T Consensus 156 ~~sNDrQSly~aNNic~A~~YFr~~GGr~~llGlvvNrDDG----sG~A~~fA~~~gipvLa~iP~d~~~Rdmddsfdfa 231 (355)
T TIGR02016 156 VTSNDRQSLYVANNICSAAEYFRKLGGRSKLLGLVVNRDDG----SGVAEAFAKEVGIPVLAKIPLDRKVRDMDDSFDFA 231 (355)
T ss_pred EECCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEECCCC----CCHHHHHHHHCCCCEEEECCCCCHHCCHHCCCHHE
T ss_conf 61374368888866988999998618860467889864688----71898989870993475267650010000000120
Q ss_pred CCEEEECCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 6189888999899999999999852212
Q gi|254780725|r 378 KMIHEVDPKSAIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 378 ~pi~e~~p~s~~a~~~~~La~~i~gr~~ 405 (427)
.-+ | .+.+.+.+||..+.+...
T Consensus 232 ikl----P--evGeP~K~lA~~i~~~~~ 253 (355)
T TIGR02016 232 IKL----P--EVGEPFKELADDILLALA 253 (355)
T ss_pred EEC----C--CCCCHHHHHHHHHHHHHC
T ss_conf 206----7--667647899999997424
No 57
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.71 E-value=2.2e-15 Score=113.71 Aligned_cols=177 Identities=16% Similarity=0.216 Sum_probs=131.4
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 30599983898999999988641100202237-30699899999986189984999980598767788999888532899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~ 106 (427)
+..|...-+++.....+.....+ .+.. +...+..+|.+.+... .|++||+|+.||.+++++.+.++.+. .|.
T Consensus 3 k~kILiVDDd~~~r~~l~~~L~~-----~g~~v~~a~~~~~al~~l~~~-~~dlvl~Di~mP~~~Gl~ll~~lr~~-~~~ 75 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAG-----AGLTCTTFENGNEVLEALASK-TPDVLLSDIRMPGMDGLALLKQIKQR-HPM 75 (469)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHC-CCC
T ss_conf 99799994989999999999987-----799899989999999998669-99999878999998999999999842-989
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC--------CCCCC--------------------
Q ss_conf 80899816871899999997656264318999899999763102332--------22345--------------------
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ--------EEGKG-------------------- 158 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~--------~~~~~-------------------- 158 (427)
++|||++.++|+....++|++|+.|||.||+++++++.++.+..... .+...
T Consensus 76 ~pvIviT~~~~~~~av~A~~~GA~dyL~KP~~~~~L~~~v~ral~~~~~~~~~~~~~~~~~~~~liG~S~~m~~v~~~i~ 155 (469)
T PRK10923 76 LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNIQVNGPTTDIIGEAPAMQDVFRIIG 155 (469)
T ss_pred CCEEEEECCCCHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHHHH
T ss_conf 97899989999899999985570443008899999999999999999998654431210675565468999999999999
Q ss_pred ---CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHCCCC
Q ss_conf ---675379997469887756899999999996269949999787989860--3343899
Q gi|254780725|r 159 ---SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA--NINFDKD 213 (427)
Q Consensus 159 ---~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~--~~~l~~~ 213 (427)
..-.-|-+.| --|+||.++|..+ +..+.+.+.+-+.|||..-..+. ..+||.+
T Consensus 156 ~~a~~~~pVLI~G-E~GTGK~~~Ar~I-H~~S~r~~~pfi~vnC~~~~~~~~e~eLFG~~ 213 (469)
T PRK10923 156 RLSRSSISVLING-ESGTGKELVAHAL-HRHSPRAKAPFIALNMAAIPKDLIESELFGHE 213 (469)
T ss_pred HHHCCCCCEEEEC-CCCCCHHHHHHHH-HHCCCCCCCCCEEEECCCCCHHHHHHHHHCCC
T ss_conf 9858899789989-8982699999999-97488779995787678899778999970876
No 58
>pfam02374 ArsA_ATPase Anion-transporting ATPase. This Pfam family represents a conserved domain, which is sometimes repeated, in an anion-transporting ATPase. The ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell.
Probab=99.70 E-value=4.4e-16 Score=118.05 Aligned_cols=172 Identities=17% Similarity=0.226 Sum_probs=99.0
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHH-----HCCCCCHHH-HHHHHHH
Q ss_conf 9997469887756899999999996269949999787989860334389987898886-----318456124-3376532
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDA-----IYPVGRIDK-AFVSRLP 237 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~-----l~~~~rlD~-~~l~~~l 237 (427)
|-|+++||||||||+|+.+|..+|+ .|+||+++-.|+.. +++-.|+++-......+ +... .+|. ..+++..
T Consensus 3 ~i~~~GKGGVGKTT~AaA~A~~~A~-~G~rvLlvStDPAh-sL~D~~~~~~g~~pt~V~~~~nL~a~-eiD~~~~~~~~~ 79 (304)
T pfam02374 3 WIFFGGKGGVGKTTVSCATAVRLSE-QGKKVLLVSTDPAH-SLSDSFNQKFGHEPTKIKGVENLSAM-EIDPQMELEEYR 79 (304)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-HHHHHHCCCCCCCCEEECCCCCCEEE-EECHHHHHHHHH
T ss_conf 9999579857489999999999995-89929999469721-48898488679996151588982798-727899999999
Q ss_pred HCCCCCEE-EEECCCCCCC--------HHCC-CHHHHHHHHHHHH-HCCCEEEECCCCCCCH------------HH----
Q ss_conf 02489806-8724876120--------3207-9999999899985-1288899738888898------------99----
Q gi|254780725|r 238 VFYAENLS-ILTAPAMLSR--------TYDF-DEKMIVPVLDILE-QIFPLVILDVPHVWNS------------WT---- 290 (427)
Q Consensus 238 ~~~~~gL~-lL~a~~~~~~--------~~~~-~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~------------~~---- 290 (427)
......+. ++. ...... ...+ ..-.+..+.+.+. ..||+||+|+||.-.. |.
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~PG~~E~~al~~i~~~~~~~~yD~VV~DtaPTGhtLrlL~lP~~l~~~l~~~~ 158 (304)
T pfam02374 80 GEVQDPINAVLG-ADMLEGILAEELSSLPGIDEIASFDEFKKYMDEGEYDVVIFDTAPTGHTLRLLSLPTVLSWYLEKII 158 (304)
T ss_pred HHHHHHHHHHHC-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHCCHHHHHHHHHHHH
T ss_conf 999999986512-2126678999983699899999999999999717887699668981779988616899999999999
Q ss_pred ---------------------------------------HHHHHHC--CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ---------------------------------------9998620--12543578776889999999999998198767
Q gi|254780725|r 291 ---------------------------------------QEVLTLS--DKVVITTSLDLAGLRNSKNLIDVLKKLRPADK 329 (427)
Q Consensus 291 ---------------------------------------~~~L~~A--D~vviV~~p~~~slr~a~~ll~~l~~~~~~~~ 329 (427)
...|... ..+++|+.|+..++..+.|++..|+..+.+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~f~lV~~pe~~~i~Et~R~~~~L~~~~i~v~ 238 (304)
T pfam02374 159 KLKNKIGPLAKPFKGPMGGSCLPEALESLEETKEQIEKAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVD 238 (304)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf 89998899988774013567627899999999999999999854989749999837984379999999999997799889
Q ss_pred CCEEEEECCCCC
Q ss_conf 538999565898
Q gi|254780725|r 330 PPYLVLNQVKTP 341 (427)
Q Consensus 330 ~~~iVlNr~~~~ 341 (427)
.+|+||+-+.
T Consensus 239 --~vvvNrvlp~ 248 (304)
T pfam02374 239 --AVIVNQVLPE 248 (304)
T ss_pred --EEEECCCCCC
T ss_conf --7988077888
No 59
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.69 E-value=5.9e-15 Score=111.11 Aligned_cols=180 Identities=15% Similarity=0.196 Sum_probs=130.4
Q ss_pred HCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
Q ss_conf 4018730599983898999999988641100202237-306998999999861899849999805987677889998885
Q gi|254780725|r 23 MCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAE 101 (427)
Q Consensus 23 ~~~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~ 101 (427)
|.+++||-| --+++.....+....+ +.+.. ...++..+|.+.+.... |++||+|+.+|++++++.|..+.+
T Consensus 1 M~~~~rILI--VDDd~~ir~~l~~~L~-----~~G~~V~~a~~~~~Al~~l~~~~-~DlvllDi~mP~~~Glell~~ir~ 72 (457)
T PRK11361 1 MTAINRILI--VDDEDNVRRMLSTAFA-----LQGFETHCANNGRTALHLFADIH-PDVVLMDIRMPEMDGIKALKEMRS 72 (457)
T ss_pred CCCCCCEEE--ECCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHHHHHCCC-CCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 999992899--8399999999999999-----77998999899999999986689-899998287999999999999982
Q ss_pred HCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC----------C--CCCC-----------
Q ss_conf 3289980899816871899999997656264318999899999763102332----------2--2345-----------
Q gi|254780725|r 102 VCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ----------E--EGKG----------- 158 (427)
Q Consensus 102 ~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~----------~--~~~~----------- 158 (427)
. .|.++||+++.+.++....++|+.|+.|||.||++.+++...+.+.+... . ....
T Consensus 73 ~-~p~~pvIvlTa~~~~~~av~A~k~GA~Dyl~KPf~~~~L~~~v~rAl~~~~l~~~~~~l~~~~~~~~~~~~lig~S~~ 151 (457)
T PRK11361 73 H-ETRTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIRHLHQALSTSWQWGHILTNSPA 151 (457)
T ss_pred C-CCCCCEEEEECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEECCHH
T ss_conf 0-989938999689998999999975966325699999999999999999988777776665432012456774546999
Q ss_pred ------------CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHCCCC
Q ss_conf ------------675379997469887756899999999996269949999787989860--3343899
Q gi|254780725|r 159 ------------SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA--NINFDKD 213 (427)
Q Consensus 159 ------------~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~--~~~l~~~ 213 (427)
..-.-|-+.| --|+||..+|-.+ +..+.+...+-+-|||---..+. ..+||-+
T Consensus 152 m~~v~~~i~~~A~s~~~VLI~G-EsGTGKe~~Ar~I-H~~S~r~~~pFv~vnc~ai~~~l~eseLFG~~ 218 (457)
T PRK11361 152 MMDICKDTAKIALSQASVLISG-ESGTGKELIARAI-HYNSRRAKGPFIKVNCAALPESLLESELFGHE 218 (457)
T ss_pred HHHHHHHHHHHHCCCCCEEEEC-CCCCCHHHHHHHH-HHHCCCCCCCEEEEECCCCCHHHHHHHHHCCC
T ss_conf 9999999999848899589988-9985789999999-98379889983876478798577899971876
No 60
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.68 E-value=6.4e-15 Score=110.90 Aligned_cols=166 Identities=12% Similarity=0.181 Sum_probs=128.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEE-EEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 3059998389899999998864110020223-730699899999986189984999980598767788999888532899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNM-RITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~-~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~ 106 (427)
.+.|..-.+++.....++.... +.+. .....+..+|++.+.... |++|++|+.+++.++++.|.++... +|.
T Consensus 5 ~~~ILIVDDd~~~~~~l~~~L~-----~~G~~v~~a~~~~~al~~l~~~~-~DlvllD~~mp~~~Gl~lL~~l~~~-~p~ 77 (441)
T PRK10365 5 NIDILVVDDDISHCTILQALLR-----GWGYNVALANSGRQALEQVREQV-FDLVLCDVRMAEMDGIATLKEIKAL-NPA 77 (441)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHHH-CCC
T ss_conf 9859998398999999999999-----77998999899999999986489-9999988999999899999999842-989
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC-----------CCCC-----------------
Q ss_conf 808998168718999999976562643189998999997631023322-----------2345-----------------
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE-----------EGKG----------------- 158 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~-----------~~~~----------------- 158 (427)
++||||+.++|+....++|+.|+.|||.||++.+++..++.+.+.... ...+
T Consensus 78 ~pvIviT~~~~~~~av~A~k~GA~Dyl~KP~~~~~L~~~i~~al~~~~~~~~~~~~~~~~~~~liG~S~am~~v~~~i~~ 157 (441)
T PRK10365 78 IPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHTHSIDAETPAVSASQFGMVGKSPAMQHLLSEIAL 157 (441)
T ss_pred CCEEEEECCCCHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHCCHHCCCCCCCCEECCHHHHHHHHHHHH
T ss_conf 82899969999899999998285123407888999999999999999876520000122257866689999999999999
Q ss_pred --CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf --67537999746988775689999999999626994999978798
Q gi|254780725|r 159 --SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 159 --~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
..-.-|-+.| --|+||..+|-.+ +..+.+.+.+-+.|||-.-
T Consensus 158 ~A~s~~pVLI~G-E~GTGK~~~Ar~I-H~~S~r~~~pfv~vnC~~l 201 (441)
T PRK10365 158 VAPSEATVLIHG-DSGTGKELVARAI-HASSARSEKPLVTLNCAAL 201 (441)
T ss_pred HHCCCCCEEEEC-CCCHHHHHHHHHH-HHCCCCCCCCCEEEECCCC
T ss_conf 848899489989-9981099999999-9657877898079878989
No 61
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.68 E-value=2.4e-15 Score=113.55 Aligned_cols=156 Identities=16% Similarity=0.233 Sum_probs=123.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEEC-CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 3898999999988641100202237306-998999999861899849999805987677889998885328998089981
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITR-GSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~-g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
-+|....-++++| |.+++..|.. ++-+.++.++...|+|++||.|+.||+.|+++.|.++.+. .|..||||++
T Consensus 5 DDD~siR~VL~~A-----L~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~-~P~LPVIvM~ 78 (471)
T TIGR01818 5 DDDRSIRWVLEKA-----LSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKR-HPKLPVIVMT 78 (471)
T ss_pred ECCCHHHHHHHHH-----HHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEEEC
T ss_conf 6471899999999-----966695453113189999998447999879861226882489999999850-8999779871
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCC-------------------C------------CCCE
Q ss_conf 68718999999976562643189998999997631023322234-------------------5------------6753
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGK-------------------G------------SSGC 162 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~-------------------~------------~~gr 162 (427)
.++|......+.+.|+.|||+||++.+|.+.-+.|......+.. | ....
T Consensus 79 A~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~~~~~~~~~~~~~~~~~~~liG~aPAMQevfR~igRL~~~~ 158 (471)
T TIGR01818 79 AHSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVALELDAGEAEDSAELIGEAPAMQEVFRAIGRLSRSD 158 (471)
T ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 30678999999735830217698766889999998610300122200012101256212368851689999999751696
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 79997469887756899999999996269949999
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
+-..+++-.|+||=-+|..|=. .+.+...+=+-+
T Consensus 159 l~VlI~GESGTGKELVA~ALH~-~s~R~~~PFiAl 192 (471)
T TIGR01818 159 LSVLINGESGTGKELVARALHR-HSPRARGPFIAL 192 (471)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCEEE
T ss_conf 0588855757758999998401-375557773273
No 62
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.60 E-value=1.2e-13 Score=103.15 Aligned_cols=163 Identities=16% Similarity=0.221 Sum_probs=126.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 59998389899999998864110020223730699899999986189984999980598767788999888532899808
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
+|...-++......+....++-. +..+...+..+|.+++... .|++|++|+.|+..++++.|.++.+. +|+++|
T Consensus 6 ~iLvVDDd~~ir~~l~~~L~~~G----~~v~~a~~~~~al~~i~~~-~~~lvl~Di~mp~~~Gl~ll~~i~~~-~~~~pV 79 (464)
T COG2204 6 RILVVDDDPDIRELLEQALELAG----YEVVTAESAEEALEALSES-PFDLVLLDIRMPGMDGLELLKEIKSR-DPDLPV 79 (464)
T ss_pred CEEEEECCHHHHHHHHHHHHHCC----CEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCE
T ss_conf 78999297899999999999769----7489858999999998628-99989981678999669999999963-899988
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC---CC-----C------C-----------------
Q ss_conf 998168718999999976562643189998999997631023322---23-----4------5-----------------
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE---EG-----K------G----------------- 158 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~---~~-----~------~----------------- 158 (427)
|+|+.+.|+....++|+.|+.|||.||++++.+..++.+.+.... +. . .
T Consensus 80 I~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~~~e~~~~~~~~~~~~~~liG~S~am~~l~~~i~k 159 (464)
T COG2204 80 IVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELRELQRENRRSLKRAKSLGGELVGESPAMQQLRRLIAK 159 (464)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99828899999999985570333218999999999999999876532221000001345567752069999999999999
Q ss_pred --CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf --675379997469887756899999999996269949999787
Q gi|254780725|r 159 --SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 159 --~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..---|-+. +-.|+||-.+|-.+ +..+.+.+.+-+-|.|-
T Consensus 160 vA~s~a~VLI~-GESGtGKElvAr~I-H~~S~R~~~PFVavNca 201 (464)
T COG2204 160 VAPSDASVLIT-GESGTGKELVARAI-HQASPRAKGPFIAVNCA 201 (464)
T ss_pred HHCCCCCEEEE-CCCCCCHHHHHHHH-HHHCCCCCCCCEEEECC
T ss_conf 84779978997-78987589999999-86074458992563346
No 63
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family; InterPro: IPR005700 The bacterial exopolysaccharide transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed at least seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport.
Probab=99.56 E-value=7.9e-14 Score=104.20 Aligned_cols=177 Identities=20% Similarity=0.206 Sum_probs=143.9
Q ss_pred CCE-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 753-7999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 160 SGC-SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~gr-vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
..+ +|.+.++..++||+.|+.|++..||. .|+|++|||.|..-+.++.+|+..+..||.|.+.+..-+.. ..-.
T Consensus 559 e~~Pvv~~~~p~p~~Gks~i~an~aaliA~-ggkR~llidad~rk~~l~q~~~~~~~~GL~d~LaG~rs~~~----~~~~ 633 (778)
T TIGR01005 559 ESEPVVALASPLPDVGKSIIEANLAALIAA-GGKRVLLIDADIRKAALSQILVKAEKSGLLDLLAGERSLEL----DVKA 633 (778)
T ss_pred CCCCEEEECCCCCCCCHHHHHHHHHHHHHC-CCCCEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHH----HCCC
T ss_conf 898758856888866568899999999832-68717873267760555644214788853755642465663----0340
Q ss_pred CCCCCEEEEECC----CCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHH-HHHCCCCC-CCCCCCHHHHH
Q ss_conf 248980687248----7612032079999999899985128889973888889899999-86201254-35787768899
Q gi|254780725|r 239 FYAENLSILTAP----AMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEV-LTLSDKVV-ITTSLDLAGLR 312 (427)
Q Consensus 239 ~~~~gL~lL~a~----~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~-L~~AD~vv-iV~~p~~~slr 312 (427)
....++.+|+++ -.....+.+-..+...+++..+..|||||||+|+...-....+ -..++.++ +|+.-+...++
T Consensus 634 ~~~~~l~~l~~GGas~~~h~~~eLLaspa~~~l~~~ar~~~D~vvvd~~~~~pV~d~~a~a~la~~~lslvt~~~r~~~~ 713 (778)
T TIGR01005 634 EVAAKLDILDAGGASLLRHNSSELLASPAMVELVENARSAYDLVVVDVAAVAPVADAKALAALADLVLSLVTEYDRSVVE 713 (778)
T ss_pred CCCCCCHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHCCEEEECCCHHHHHHHHHHHHHCCCEEEHHEEEECCEEHH
T ss_conf 23677112334761247888415321668899999886518857745531248999999742242002001111441044
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 9999999999819876753899956589875
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKK 343 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~ 343 (427)
.....++.+...+. .-..+|+|+.++...
T Consensus 714 ~~r~~~~~~~~~n~--~v~gV~ln~ldpn~~ 742 (778)
T TIGR01005 714 LVRELLKSLSRLNS--EVLGVVLNKLDPNEL 742 (778)
T ss_pred HHHHHHHHHHHCCC--EEEEEEECCCCCCCH
T ss_conf 42887754453186--045665045575201
No 64
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.55 E-value=4.3e-13 Score=99.67 Aligned_cols=119 Identities=13% Similarity=0.214 Sum_probs=95.9
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
++|.---+++..+..+....+ ++..-......++..+|.+.+... .|++|++|+.+|.+++++.+.+|.+. .+.++
T Consensus 5 i~VLIVEDd~~v~~~l~~~L~--~~~gf~~V~~A~~~~eA~~~l~~~-~pDLvLLDi~LPd~~Glell~~lr~~-~~~~~ 80 (225)
T PRK10046 5 LTLLIVEDETPLAEMHAEYIR--HIPGFSQILLAGNLAQARMMIERF-KPGLILLDNYLPDGRGINLLHELVQA-HYPGD 80 (225)
T ss_pred CEEEEEECCHHHHHHHHHHHH--HCCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHH-CCCCC
T ss_conf 869999598999999999997--289954999989999999999735-99999982898999799999999964-87998
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
||+|+..+|....+++++.||.|||+||++.+++.+++.+...
T Consensus 81 VI~iTA~~d~~~~~~Al~~Ga~DYLvKPf~~erl~~~L~~y~~ 123 (225)
T PRK10046 81 VVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQ 123 (225)
T ss_pred EEEEECCCCHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHH
T ss_conf 8999689999999999974998310289999999999999999
No 65
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.51 E-value=1.5e-13 Score=102.53 Aligned_cols=111 Identities=23% Similarity=0.194 Sum_probs=77.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC-
Q ss_conf 9997469887756899999999996269949999787989860334389987898886318456124337653202489-
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE- 242 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~- 242 (427)
|+|.| ||||||||+++++|.+|++ .+++|++||.|+. ++.. ++.....+
T Consensus 2 ia~~G-KGGvGKtt~~~~la~~l~~-~g~~vl~iD~Dp~--dlpe--------------------------~~~~~~~~~ 51 (116)
T cd02034 2 IAITG-KGGVGKTTIAALLARYLAE-KGKPVLAIDADPD--DLPE--------------------------RLSVEVGEI 51 (116)
T ss_pred EEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC--CCHH--------------------------HHCEECCCC
T ss_conf 78988-9977499999999999997-8996999989897--1235--------------------------542331787
Q ss_pred -CEEEEECCCCCCCH-HCCCHHHHHHHHHHH-HHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCC
Q ss_conf -80687248761203-207999999989998-512888997388888989999986201254357
Q gi|254780725|r 243 -NLSILTAPAMLSRT-YDFDEKMIVPVLDIL-EQIFPLVILDVPHVWNSWTQEVLTLSDKVVITT 304 (427)
Q Consensus 243 -gL~lL~a~~~~~~~-~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~ 304 (427)
.+.++......... +-.....++.+++.+ ...|+|||+|++.+..+..+......|.+++|.
T Consensus 52 ~~l~~lg~~~~~g~GC~C~~n~ll~~~l~~l~~~~~~~VvvD~eAGiEHl~Rg~~~~vD~livVs 116 (116)
T cd02034 52 KLLLVMGMGRPGGEGCYCPENALLNALLRHLVLTRDEQVVVDTEAGLEHLGRGTAEGVDLLVVVN 116 (116)
T ss_pred CEEEEEECCCCCCCCEECCHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCHHHCCCEEEEEC
T ss_conf 07999973435899408825789999999970679989999678548777300664399999969
No 66
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.48 E-value=2.3e-12 Score=95.20 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=90.2
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 3898999999988641100202237306998999999861-899849999805987677889998885328998089981
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSD-SSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~-~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
++|+...+-+.+..-+ +...-++.-...+..+|.+.+.. ...||+||+|+.+|.+++++.|..|.+. .|.++||+|+
T Consensus 7 VEDD~~v~~~~~~~l~-~~~gf~vv~~a~t~~eA~~~l~~~~~~~DLILLDi~mPd~~Glell~~lR~~-~~~~~VI~IT 84 (239)
T PRK10430 7 VDDDAMVAELNRRYVA-QIPGFQCCGTASTLEKAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEA-GCKSDVIVIS 84 (239)
T ss_pred EECCHHHHHHHHHHHH-HCCCCEEEEEECCHHHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 9298999999999985-1899089999899999999996579998589978999999789999999985-8998199997
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 687189999999765626431899989999976310
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
..+|....+++++.||.|||+||++.+.+.+++.+-
T Consensus 85 a~~d~~~v~~Al~~Ga~DYLiKPf~~~rl~~~L~~y 120 (239)
T PRK10430 85 SAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGW 120 (239)
T ss_pred ECCCHHHHHHHHHCCCHHHEECCCCHHHHHHHHHHH
T ss_conf 268899999999839503048999999999999999
No 67
>PRK10693 response regulator of RpoS; Provisional
Probab=99.46 E-value=6.4e-12 Score=92.46 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=93.9
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 18730599983898999999988641100202237-30699899999986189984999980598767788999888532
Q gi|254780725|r 25 SLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVC 103 (427)
Q Consensus 25 ~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~ 103 (427)
|+-.-.|..--+++.....+.... .+.+.. +...+..+|++.+... .|++||+|+.||..++++.+++|++.
T Consensus 4 pl~gkkILIVDDd~~~r~~l~~~L-----~~~G~~V~~A~nG~eAl~~l~~~-~pDLIi~Dl~MP~mdGlell~~lr~~- 76 (337)
T PRK10693 4 PLVGKQILIVEDEPVFRSLLDSWF-----SSLGATTVLAADGVDALELLGGF-TPDLMICDIAMPRMNGLKFVEHLRNR- 76 (337)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHHH-
T ss_conf 888998999949999999999999-----97899999989999999998658-99999996899999989999999985-
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCC-CHHHHHHHHHHCC
Q ss_conf 8998089981687189999999765626431899-9899999763102
Q gi|254780725|r 104 DSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPL-SVADIINSISAIF 150 (427)
Q Consensus 104 ~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~-~~~~l~~ai~~~~ 150 (427)
.+.++||+++..+|..-..+++++||.|||.||+ +..++.+++.+..
T Consensus 77 ~~~~PVIvlTa~~~~~d~v~al~~GA~DyL~KPI~d~~~Lr~~v~a~l 124 (337)
T PRK10693 77 GDQTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREAVFACL 124 (337)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 899649999868999999999974995899789699999999999875
No 68
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.44 E-value=1.4e-12 Score=96.57 Aligned_cols=95 Identities=27% Similarity=0.347 Sum_probs=78.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
+|+|.|.| |+||||+|+|||..|++ .|++|+++|
T Consensus 1 ~i~~~~~k-GvGKTT~a~~La~~la~-~g~~Vl~vD-------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKG-GVGKTTLAANLAAALAK-RGKRVLLID-------------------------------------------- 34 (99)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHH-CCCEEEEEC--------------------------------------------
T ss_conf 98985899-77689999999999998-899699986--------------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH---HHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 806872487612032079999999899985128889973888889899---99986201254357877688999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT---QEVLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~---~~~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
|||++|+|+..+... ..++..+|.++++++|+..++....+..+
T Consensus 35 ---------------------------------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (99)
T cd01983 35 ---------------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTE 81 (99)
T ss_pred ---------------------------------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ---------------------------------71788589988846899998787589589965984889999999999
Q ss_pred HHHH-CCCCCCCCEEEEE
Q ss_conf 9998-1987675389995
Q gi|254780725|r 320 VLKK-LRPADKPPYLVLN 336 (427)
Q Consensus 320 ~l~~-~~~~~~~~~iVlN 336 (427)
.... .........+++|
T Consensus 82 ~~~~~~~~~~~~~~vv~n 99 (99)
T cd01983 82 VVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHCCCCCCEEEEECC
T ss_conf 999841069815788539
No 69
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.42 E-value=2.2e-11 Score=89.20 Aligned_cols=117 Identities=11% Similarity=0.163 Sum_probs=96.2
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 59998389899999998864110020223730-69989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
.|..--+++.....+... |.+.+..|. ..+..+|.+.+... .|++||+|++++..++++.+.+|++. .++++
T Consensus 5 kILiVEDd~~l~~~l~~~-----L~~~g~~v~~~~~~~~al~~~~~~-~~DlvilDi~LP~~~G~~l~~~iR~~-~~~~p 77 (229)
T PRK11083 5 TILLVEDEQAIADTLVYA-----LQSEGFTVEWFERGLPALDKLRQQ-PPDLVILDVGLPDISGFELCRQLRAF-HPALP 77 (229)
T ss_pred EEEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHHHH-CCCCE
T ss_conf 999996999999999999-----998899999989999999999718-99899973889998768899999970-89972
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 899816871899999997656264318999899999763102332
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ 153 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~ 153 (427)
||+++..++..-....++.|+.||+.||+++.+|.+.+..++.+.
T Consensus 78 II~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrR~ 122 (229)
T PRK11083 78 VIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (229)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHH
T ss_conf 999836789899999997599877308742899999999999764
No 70
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.41 E-value=8.6e-12 Score=91.67 Aligned_cols=108 Identities=17% Similarity=0.280 Sum_probs=90.7
Q ss_pred ECCHH-HHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 38989-99999988641100202237-30699899999986189984999980598767788999888532899808998
Q gi|254780725|r 35 CVTDT-LYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 35 ~~~~~-~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
++|+. ....+....+. .+.. ....+..+|++.+... .|++||+|+.+|..++++.+.++++. .|.++||++
T Consensus 3 VDD~~~~~~~l~~~L~~-----~g~~v~~a~~g~~al~~~~~~-~~dlvi~D~~mP~~~G~el~~~ir~~-~~~~pvI~l 75 (113)
T cd00156 3 VDDDPLIRELLRRLLEK-----EGYEVVEAEDGEEALALLAEE-KPDLILLDIMMPGMDGLELLRRIRKR-GPDIPIIFL 75 (113)
T ss_pred ECCCHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCEEEE
T ss_conf 92729999999999998-----899999989999999998757-99999977999898726999999985-899959999
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 1687189999999765626431899989999976310
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
+..++.....++++.|+.+|+.||++..++..++.++
T Consensus 76 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~v~~~ 112 (113)
T cd00156 76 TAHGDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 7878999999999768978996989999999999986
No 71
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.40 E-value=9.1e-12 Score=91.52 Aligned_cols=103 Identities=17% Similarity=0.329 Sum_probs=90.1
Q ss_pred HHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 11002022373069989999998618998499998059876778899988853289980899816871899999997656
Q gi|254780725|r 50 DPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHV 129 (427)
Q Consensus 50 drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv 129 (427)
|..=-+.++.-.+-+...|.+.++..+ |++||.|+.||..+|++.++.+.+. .|.+.+|+++..+|-.-.+.+|+.||
T Consensus 22 ~w~~~g~eiVgtA~NG~eAleli~e~~-pDiviTDI~MP~mdGLdLI~~ike~-~p~~~~IILSGy~eFeYak~Am~lGV 99 (475)
T COG4753 22 DWEALGIEVVGTAANGKEALELIQETQ-PDIVITDINMPGMDGLDLIKAIKEQ-SPDTEFIILSGYDEFEYAKKAMKLGV 99 (475)
T ss_pred CHHHCCCEEEEECCCHHHHHHHHHHCC-CCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEEECCCHHHHHHHHHHCCC
T ss_conf 856369757875145799999987349-9789981578887579999999974-99853999846420589999986185
Q ss_pred CEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 2643189998999997631023322
Q gi|254780725|r 130 SEYLIEPLSVADIINSISAIFTPQE 154 (427)
Q Consensus 130 ~dyl~~P~~~~~l~~ai~~~~~~~~ 154 (427)
.|||.||++..++..++.++.+.-.
T Consensus 100 ~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 100 KDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred HHHEECCCCHHHHHHHHHHHHHHHH
T ss_conf 2122076989999999999999999
No 72
>pfam00072 Response_reg Response regulator receiver domain. This domain receives the signal from the sensor partner in bacterial two-component systems. It is usually found N-terminal to a DNA binding effector domain.
Probab=99.39 E-value=2e-11 Score=89.38 Aligned_cols=106 Identities=14% Similarity=0.217 Sum_probs=89.3
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 3898999999988641100202237-306998999999861899849999805987677889998885328998089981
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
-+++.....+....+. .+.. ....+..+|++.++.. .|++||+|+.+|..++++.+.++++. .|.++||+++
T Consensus 5 DD~~~~~~~l~~~L~~-----~g~~v~~a~~g~~al~~~~~~-~~dlvi~Di~mP~~dG~el~~~ir~~-~~~~piI~~T 77 (111)
T pfam00072 5 DDDPLIRELLRQLLEK-----EGYVVAEADDGEEALELLKEK-RPDLILLDIRMPGMDGLELLRRIRRR-PPTTPVIVLT 77 (111)
T ss_pred ECCHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHC-CCCCEEEEEE
T ss_conf 8989999999999998-----899999989999999999847-99899995368995015799999735-9998099997
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHH
Q ss_conf 6871899999997656264318999899999763
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSIS 147 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~ 147 (427)
..++.....+++++|+.||+.||++..++.++++
T Consensus 78 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~ir 111 (111)
T pfam00072 78 AHGDEEDAVEALKAGANDFLSKPFDPEELVAALR 111 (111)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHCC
T ss_conf 5089999999997798779949999899998529
No 73
>TIGR00345 arsA arsenite-activated ATPase (arsA); InterPro: IPR003348 This ATPase is involved in the removal of arsenate, antimonite, and arsenate from the cell. In Escherichia coli an anion-translocating ATPase has been identified as the product of the arsenical resistance operon of resistance plasmid R773. This ATP-driven oxyanion pump catalyses extrusion of the oxyanions arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance . The ArsA and ArsB proteins form a membrane-bound pump that functions as an oxyanion-translocating ATPase. The ArsC protein is an arsenate reductase that reduces arsenate to arsenite, which is subsequently pumped out of the cell .; GO: 0005524 ATP binding, 0006820 anion transport, 0016020 membrane.
Probab=99.38 E-value=1.8e-12 Score=95.81 Aligned_cols=171 Identities=21% Similarity=0.258 Sum_probs=95.0
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHCCCCCCCCHH-----HHHCCCCCHHH---------
Q ss_conf 974698877568999999999962-699499997879898603343899878988-----86318456124---------
Q gi|254780725|r 166 FIGSRGGVGSSTIAHNCAFSIASV-FAMETLLADLDLPYGTANINFDKDPINSIS-----DAIYPVGRIDK--------- 230 (427)
Q Consensus 166 v~g~KGGvGkTTiA~nLA~~LA~~-~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~-----d~l~~~~rlD~--------- 230 (427)
|+|+||||||||+++..|..||++ .|++||||=-||.+ +++-.|+.+-+++.. +-|... .+|+
T Consensus 1 f~gGKGGVGKTt~SaAtA~~lAe~qPGkkvLl~STDPAH-sL~D~F~~e~G~~~~kv~g~eNL~~~-EIDp~~al~~y~~ 78 (330)
T TIGR00345 1 FFGGKGGVGKTTISAATAIRLAEQQPGKKVLLVSTDPAH-SLSDVFEQELGHEPTKVKGVENLSAV-EIDPQAALEEYRA 78 (330)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCH-HHHHHHHHHHCCCCCEEECCCCCEEE-EECHHHHHHHHHH
T ss_conf 977878823888999999999851899779998408600-27886113217773032058985555-1037899998799
Q ss_pred ---HHHHHHHHCCCCCE-EEEEC-------C----CCCCCHHCCCHHHHHHHHHHHH-HC---CCEEEECCCC-------
Q ss_conf ---33765320248980-68724-------8----7612032079999999899985-12---8889973888-------
Q gi|254780725|r 231 ---AFVSRLPVFYAENL-SILTA-------P----AMLSRTYDFDEKMIVPVLDILE-QI---FPLVILDVPH------- 284 (427)
Q Consensus 231 ---~~l~~~l~~~~~gL-~lL~a-------~----~~~~~~~~~~~~~l~~ll~~l~-~~---yd~VIiD~p~------- 284 (427)
.+.+++......|+ +.|-. . .-|.-.+-..-..+...++... .. ||+||+|+.|
T Consensus 79 rvf~~~~~i~~~~~~~~~~~l~~ql~~~~~~dltGsiPGiDE~~~F~~~~k~~~~~~~~e~etyD~vIfDTAPTGHTLRL 158 (330)
T TIGR00345 79 RVFKLKEQIKQNLSLGVVDMLEDQLEGAALSDLTGSIPGIDEIAAFDEFLKHMDEAELNERETYDVVIFDTAPTGHTLRL 158 (330)
T ss_pred HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHH
T ss_conf 99999999860678873202799999877775227998588999999999876543215676234688716974677753
Q ss_pred -----CCCHHHH-------------------------------------------------HHHHH--CCCCCCCCCCCH
Q ss_conf -----8898999-------------------------------------------------99862--012543578776
Q gi|254780725|r 285 -----VWNSWTQ-------------------------------------------------EVLTL--SDKVVITTSLDL 308 (427)
Q Consensus 285 -----~~~~~~~-------------------------------------------------~~L~~--AD~vviV~~p~~ 308 (427)
.|+.|.. .+|.- =..+++|+.|+-
T Consensus 159 L~lP~~~~~~~~~~~k~~~~~g~~~~~~~~~Lpf~G~~~~l~~~~~l~~~~e~Ke~~~~~~~~l~DP~~T~f~~V~~pE~ 238 (330)
T TIGR00345 159 LQLPEVLSKFLEKFIKLREKLGPMLKLFKELLPFMGAGESLEDDEALEKLEELKEQIEAAREVLSDPERTSFVLVVIPEK 238 (330)
T ss_pred HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 10023679999874356777889887664105789898878778999989999999999999724998516888860262
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 88999999999999819876753899956589
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
.++..+.|++..|...+.... .||+|++-+
T Consensus 239 ~~l~E~~R~~~~L~~Y~~~~~--~vIvN~vLP 268 (330)
T TIGR00345 239 MSLYESERAHKELKKYGIKVD--AVIVNQVLP 268 (330)
T ss_pred CCHHHHHHHHHHHHHCCCCCC--EEEECCCCC
T ss_conf 427899999999986498504--478702257
No 74
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.37 E-value=3.8e-11 Score=87.73 Aligned_cols=115 Identities=9% Similarity=0.189 Sum_probs=96.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
|..--++......+... |.+.+..|. ..+..+|.+.+... .|++||+|+.+|..++++.+.++++. .+++||
T Consensus 3 ILiVEDd~~l~~~l~~~-----L~~~G~~v~~a~~g~~a~~~~~~~-~~DlvilDi~lP~~~G~~l~~~iR~~-~~~~PI 75 (226)
T PRK09836 3 LLIVEDEKKTGEYLTKG-----LTEAGFVVDLADNGLNGYHLAMTG-DYDLIILDIMLPDVNGWDIVRMLRSA-NKGMPI 75 (226)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHH-CCCCEE
T ss_conf 99993999999999999-----987899999989999999998518-99999988999999872043567761-679609
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
|+++..+|..-...++..|+.||+.||++..++.+.+..++.+
T Consensus 76 I~Lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~allrr 118 (226)
T PRK09836 76 LLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (226)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9994458988999999769968863687679999999999662
No 75
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.37 E-value=1.6e-11 Score=90.06 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=92.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 305999838989999999886411002022373-0699899999986189984999980598767788999888532899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~ 106 (427)
|-+|.---+.+-....++...+ ...+.| ...+..++.+.+... .|+++|+|+++|+.++++.+.+|.+. .|.
T Consensus 3 k~tIliVDDh~~vr~gl~~lL~-----~~~~~v~~~~~~~~~l~~~~~~-~pdlvllDi~mP~~~G~e~l~~l~~~-~p~ 75 (202)
T PRK09390 3 KGVVHVVDDDEAMRDSLAFLLD-----SAGFEVRLFESAQAFLDALPGL-RFGCVVTDVRMPGIDGIELLRRLKAR-GSP 75 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHH-----HCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHHHC-CCC
T ss_conf 9979998499999999999999-----8899899989999999997657-97999877999998960799998722-899
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 808998168718999999976562643189998999997631023
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
++||+++.+.|.....+++++|+++|+.||.+.+++++++.+.+.
T Consensus 76 ~~vivlT~~~~~~~~~~al~~GA~gyl~K~~~~~~L~~aI~~~l~ 120 (202)
T PRK09390 76 LPVIVMTGHGDVPLAVEAMKLGAIDFIEKPFEDERLIGAIERALA 120 (202)
T ss_pred CCEEEEEECCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 867999745748888999982946445599999999999999997
No 76
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.36 E-value=5.7e-11 Score=86.62 Aligned_cols=120 Identities=13% Similarity=0.135 Sum_probs=97.9
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC-CCC
Q ss_conf 3059998389899999998864110020223730699899999986189984999980598767788999888532-899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVC-DSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~-~p~ 106 (427)
++.|..--+++.....++...+...+. .-....+..+|++.+... .|++|++|..+|..++++.+..+++.. .+.
T Consensus 5 ~lrILivDD~~~~r~~l~~~L~~~g~~---~v~~a~~g~~al~~~~~~-~~Dlil~D~~MP~~dG~el~~~ir~~~~~~~ 80 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFN---NVEEAEDGVDALNKLQAG-GFGFVISDWNMPNMDGLELLKTIRADGAMSA 80 (129)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCC---EEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 989999979899999999999986997---899989999999999858-9999998189999989999999985777789
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 808998168718999999976562643189998999997631023
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
+|||+++...+.....+++++|+.+||.||++..++.+.+.+++.
T Consensus 81 ~Pii~~T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~vl~ 125 (129)
T PRK10610 81 LPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 968999886899999999986998899898999999999999997
No 77
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.35 E-value=4.8e-11 Score=87.06 Aligned_cols=114 Identities=16% Similarity=0.229 Sum_probs=88.9
Q ss_pred CCEEEEEEECC-HHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-C
Q ss_conf 73059998389-8999999988641100202237-3069989999998618998499998059876778899988853-2
Q gi|254780725|r 27 PRISVHVFCVT-DTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEV-C 103 (427)
Q Consensus 27 ~~~~~~~f~~~-~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~-~ 103 (427)
+||-| ++| +....++... |.+.+.. +...+..+|++.+... .|++|++|+.||++++++.+.+|.+. .
T Consensus 3 ~rILi---VdD~~~~~~~l~~~-----L~~~~y~v~~a~~G~eAL~~~~~~-~PDLILlDi~MP~mdG~ev~r~Lk~~~~ 73 (457)
T PRK09581 3 ARILV---VDDIPANVKLLEAK-----LLAEYYTVLTASSGAEAIEICERE-QPDIILLDVMMPGMDGFEVCRRLKSDPA 73 (457)
T ss_pred CCEEE---ECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCCCC
T ss_conf 71999---94989999999999-----987899999989999999999718-9998999287799999999999965988
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 8998089981687189999999765626431899989999976310
Q gi|254780725|r 104 DSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 104 ~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
...+|||+++..+|.....+++++|+.|||.||++..++...++.+
T Consensus 74 ~~~iPVIvlTa~~d~e~~~~al~~GA~DYL~KP~~~~~L~~ri~~l 119 (457)
T PRK09581 74 TAHIPVVMVTALDDPSDRVRGLEAGADDFLTKPINDVALFARVKSL 119 (457)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 8998499997899999999998648878998999989999999999
No 78
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.35 E-value=3.2e-11 Score=88.13 Aligned_cols=113 Identities=9% Similarity=0.153 Sum_probs=94.7
Q ss_pred EEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98389899999998864110020223730-69989999998618998499998059876778899988853289980899
Q gi|254780725|r 33 VFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIV 111 (427)
Q Consensus 33 ~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Viv 111 (427)
.--+++.....+... |.+.+..|. ..+..+|.+.+... .|+++|+|+.+|..++++.+.++++. .+.+|||+
T Consensus 5 lVEDd~~l~~~l~~~-----L~~~g~~V~~a~~g~~a~~~~~~~-~~DlvilDi~lP~~dG~~l~~~iR~~-~~~~PII~ 77 (219)
T PRK10336 5 LIEDDMLIGDGIKTG-----LSKMGFSVDWFTQGRQGKEALYSA-PYDAVILDLTLPGMDGRDILREWREK-GQREPVLI 77 (219)
T ss_pred EEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCCCCCCCHHHH-CCCCCEEE
T ss_conf 993899999999999-----998799999989999999998628-96999997999999856310104652-78887899
Q ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 81687189999999765626431899989999976310233
Q gi|254780725|r 112 IGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 112 ig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
++..++..-..+.+.+|+.||+.||+++.++.+.+..++.+
T Consensus 78 lta~~~~~d~i~~l~~GAdDYl~KPf~~~eL~ari~allrr 118 (219)
T PRK10336 78 LTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRR 118 (219)
T ss_pred EECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 80689999999999769988868897679999999999611
No 79
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.35 E-value=5.3e-11 Score=86.81 Aligned_cols=116 Identities=13% Similarity=0.202 Sum_probs=95.4
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 59998389899999998864110020223730-69989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
.|..--+++.....+.... .+.+..|. ..+..+|.+.+... .|++||+|+.+|+.++++.+..|++. .+.+|
T Consensus 7 kILiVEDd~~~~~~l~~~L-----~~~g~~v~~a~~~~~a~~~~~~~-~~DlvilDi~lp~~dG~~l~~~iR~~-~~~~p 79 (239)
T PRK09468 7 KILVVDDDMRLRALLERYL-----TEQGFQVRSAANAEQMDRLLTRE-SFHLMVLDLMLPGEDGLSICRRLRSQ-NNPTP 79 (239)
T ss_pred EEEEEECCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCHHHHHHHHH-CCCCC
T ss_conf 8999909999999999999-----98899999989999999999758-99899987899888873467778750-57877
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89981687189999999765626431899989999976310233
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
||+++..+|..-...++..|+.||+.||++..+|.+.+..++.+
T Consensus 80 II~LTa~~~~~d~i~~l~~GADDYi~KPf~~~EL~aRI~allrR 123 (239)
T PRK09468 80 IIMLTAKGEEVDRIVGLEMGADDYLPKPFNPRELLARIRAVLRR 123 (239)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89994667878999999769868855899989999999999863
No 80
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.30 E-value=1.1e-10 Score=84.79 Aligned_cols=117 Identities=14% Similarity=0.199 Sum_probs=96.2
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCCE
Q ss_conf 999838989999999886411002022373-069989999998618998499998059876778899988853-289980
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEV-CDSGTK 108 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~-~~p~~~ 108 (427)
|..--+++.....+... |.+.+..| ...+..+|.+.+... .|+++|+|+.+|..++++.+..|++. +.+++|
T Consensus 5 ILiVEDd~~l~~~l~~~-----L~~~g~~v~~a~~g~~a~~~l~~~-~~DliilDi~lP~~dG~~~~~~ir~~~~~~~~P 78 (229)
T PRK10161 5 ILVVEDEAPIREMVCFV-----LEQNGFQPVEAEDYDSAVNQLNEP-WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIP 78 (229)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCCC
T ss_conf 99995999999999999-----997799999989999999998528-998999978998876335878877502468975
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 899816871899999997656264318999899999763102332
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ 153 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~ 153 (427)
||+++..++..-....+..|+.||+.||+++.+|++.+..++.+.
T Consensus 79 II~lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~aRi~a~lrR~ 123 (229)
T PRK10161 79 VVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRI 123 (229)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 899955666577999987698765208999899999999997123
No 81
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.30 E-value=1.4e-10 Score=84.26 Aligned_cols=114 Identities=15% Similarity=0.202 Sum_probs=95.7
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
|..--++++....+... |.+.+..|. ..+..+|.+.+... .|++||+|+.+|..++++.+..+++. ..+||
T Consensus 3 ILiVEDd~~l~~~l~~~-----L~~~g~~V~~a~~g~~al~~~~~~-~~DlvilDi~lP~~dG~~l~~~iR~~--~~~pI 74 (223)
T PRK11517 3 ILLIEDNQRTQEWVTQG-----LSEAGYVIDAVSDGRDGLYLALKD-DYALIILDIMLPGMDGWQILQTLRTA--KQTPV 74 (223)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHHC--CCCCE
T ss_conf 99996989999999999-----998899999989999999998528-99999984999873689999999856--88648
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
|+++..++..-....+..|+.||+.||++..++.+.+..++.+
T Consensus 75 I~lta~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~a~lrr 117 (223)
T PRK11517 75 ICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 9995655657899999839877620897789999999999641
No 82
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.29 E-value=2.9e-10 Score=82.24 Aligned_cols=116 Identities=16% Similarity=0.246 Sum_probs=95.7
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCEEEEEC-CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 9983898999999988641100202237306-998999999861899849999805987677889998885328998089
Q gi|254780725|r 32 HVFCVTDTLYSVVERSKIDPRMSQVNMRITR-GSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI 110 (427)
Q Consensus 32 ~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~-g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi 110 (427)
..--++++....+... +.+.++.|.. .+..+|.+..... |++||+|+.+|..++++.+.++++.-...+|||
T Consensus 4 LiveDd~~i~~~l~~~-----L~~~G~~v~~~~~~~~a~~~~~~~--~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi 76 (229)
T COG0745 4 LLVEDDPELAELLKEY-----LEEEGYEVDVAADGEEALEAAREQ--PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPII 76 (229)
T ss_pred EEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC--CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCEE
T ss_conf 9991888999999999-----987597899978989999997269--999999889998568999999985168999889
Q ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 98168718999999976562643189998999997631023322
Q gi|254780725|r 111 VIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE 154 (427)
Q Consensus 111 vig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~ 154 (427)
+++...+..-....+.+|+.||+.||+++.++.+.+..++.+..
T Consensus 77 ~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 77 VLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EEECCCCHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 99668728889999975634233488998999999999967365
No 83
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.28 E-value=9e-11 Score=85.41 Aligned_cols=115 Identities=18% Similarity=0.284 Sum_probs=95.6
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 599983898999999988641100202237-3069989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
.|..--++++....+.... .+.+.. ....+..+|.+.+... .|++||+|+++|..++++.+.+|++. .++|
T Consensus 8 kILiVEDd~~l~~~l~~~L-----~~~G~~v~~a~~g~~a~~~~~~~-~~DlviLDi~LP~~dG~~l~~~iR~~--~~~P 79 (240)
T CHL00148 8 KILVVDDEASIRRILETRL-----SIIGYEVITASDGEEALKLFHQE-QPDLVILDVMMPKLDGYGVCQEIRKE--SDVP 79 (240)
T ss_pred EEEEEECCHHHHHHHHHHH-----HHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCEEEECCCCC--CCCC
T ss_conf 2999939899999999999-----97899999989999999999747-99999997999988866305414037--9954
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89981687189999999765626431899989999976310233
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
||+++..++..-....+.+|+.||+.||+++.+|.+.+..++.+
T Consensus 80 II~LTa~~~~~d~v~gl~~GADDYi~KPf~~~EL~aRi~allrr 123 (240)
T CHL00148 80 IIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRR 123 (240)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 89981678989999999769978952784479999999999866
No 84
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.27 E-value=1.1e-10 Score=84.77 Aligned_cols=118 Identities=14% Similarity=0.206 Sum_probs=96.9
Q ss_pred CCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHC
Q ss_conf 1873059998389899999998864110020223730-699899999986189984999980598767788999888532
Q gi|254780725|r 25 SLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVC 103 (427)
Q Consensus 25 ~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~ 103 (427)
.-|||-| --+++.....+... |.+.++.|. ..+..+|.+.+... .|++||+|++++..++++.+.+|++.
T Consensus 9 ~~~kILl--VEDd~~l~~~l~~~-----L~~~g~~V~~a~~~~eal~~~~~~-~~DliilDi~lp~~~Gl~l~~~lr~~- 79 (240)
T PRK10710 9 NTPRILI--VEDEPKLGQLLIDY-----LRAASYAPTLISHGDEVLPYVRQT-PPDLILLDLMLPGTDGLTLCREIRRF- 79 (240)
T ss_pred CCCEEEE--EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCCHHHHHCC-
T ss_conf 9887999--92989999999999-----998899999989999999999737-99899987999888776321122115-
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 8998089981687189999999765626431899989999976310233
Q gi|254780725|r 104 DSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 104 ~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
++++||+++...+..-...++.+|+.||+.||++..++.+.+..+..+
T Consensus 80 -~~~piI~lta~~~~~~~~~al~~GAddYl~KPf~~~eLlari~~~lrr 127 (240)
T PRK10710 80 -SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRR 127 (240)
T ss_pred -CCCCEEEECCCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHHH
T ss_conf -764689981678889999999869987600776538999999999845
No 85
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.26 E-value=2.4e-10 Score=82.74 Aligned_cols=115 Identities=11% Similarity=0.171 Sum_probs=94.6
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
|.---+++.....+... |.+.++.|. .++..+|.+.+.... |+++|+|+.++..++++.+.++.+. .+.+||
T Consensus 3 ILlVEDd~~~~~~l~~~-----L~~~g~~V~~a~~~~ea~~~~~~~~-~DlvilDi~lp~~~G~~l~~~ir~~-~~~~pI 75 (222)
T PRK10643 3 ILIVEDDTLLLQGLILA-----AQTEGYACDGVSTAREAEQSLESGH-YSLVVLDLGLPDEDGLHFLARIRQK-KYTLPV 75 (222)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHCC-CCEEEEECCCCCCCCHHHHHHHHHC-CCCCCE
T ss_conf 99992889999999999-----9978999999899999999997489-9899996888998622689999834-899889
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
|+++..++..-...++.+|+.||+.||++..++.+.+..+...
T Consensus 76 I~lt~~~~~~~~~~~l~~GAddyi~KP~~~~eL~ari~~~lrr 118 (222)
T PRK10643 76 LILTARDTLEDRIAGLDVGADDYLVKPFALEELHARIRALLRR 118 (222)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9982103678899999759977643887689999999999703
No 86
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.26 E-value=2.2e-10 Score=82.95 Aligned_cols=112 Identities=13% Similarity=0.245 Sum_probs=92.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
--++......+... +...+..| ...+..+|.+.+... .|+++|+|+.+++.++++.+.++++. .+.+|||++
T Consensus 6 vEdd~~~~~~l~~~-----L~~~g~~V~~a~~~~~al~~~~~~-~~dlvilD~~lp~~~G~~l~~~ir~~-~~~~piI~l 78 (223)
T PRK10816 6 VEDNALLRHHLKVQ-----LQDAGHQVDAAEDAKEADYYLNEH-LPDIAIVDLGLPDEDGLSLIRRWRSN-DVSLPILVL 78 (223)
T ss_pred EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCCCCHHCC-CCCCCEEEE
T ss_conf 95989999999999-----997899999989999999999757-99899997999898864001201104-898768999
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 1687189999999765626431899989999976310233
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
+..++..-..+++.+|+.||+.||++..++...+..+..+
T Consensus 79 ta~~~~~~~~~al~~Gaddyl~KP~~~~eL~arv~~~lrr 118 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRR 118 (223)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 4445677899999869988641897778999999999665
No 87
>PRK09483 response regulator; Provisional
Probab=99.25 E-value=3.9e-10 Score=81.46 Aligned_cols=118 Identities=12% Similarity=0.185 Sum_probs=96.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 59998389899999998864110020223730699899999986189984999980598767788999888532899808
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
.|.-.-+.+-+...++...+. .....+.....+..++++.+... .|+++|+|+.+++.++++.+.++... .|.++|
T Consensus 3 ~VlIvDDh~l~r~gl~~~L~~--~~~~~vv~~a~~~~~~l~~~~~~-~pDvvllDl~lp~~~Gl~~~~~i~~~-~p~~~v 78 (216)
T PRK09483 3 NVLLVDDHELVRAGIRRILED--IKGIKVVGEASCGEDAVKWCRTN-AVDVVLMDMNMPGIGGLEATRKILRS-TPDVKI 78 (216)
T ss_pred EEEEECCCHHHHHHHHHHHHH--CCCCEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHHHH-CCCCCE
T ss_conf 899984999999999999974--89958999989999999999855-99999986889898752377888740-899857
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 998168718999999976562643189998999997631023
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
|+++...|.....+++++|++.|+.|+.+++++.+++..+..
T Consensus 79 ivls~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~ 120 (216)
T PRK09483 79 IMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (216)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 863056632889999974887899479999999999999985
No 88
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB; InterPro: IPR011879 PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself . It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0006817 phosphate transport.
Probab=99.25 E-value=1.1e-10 Score=84.89 Aligned_cols=149 Identities=13% Similarity=0.184 Sum_probs=113.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEE
Q ss_conf 83898999999988641100202237-306998999999861899849999805987677889998885328-9980899
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCD-SGTKVIV 111 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~-p~~~Viv 111 (427)
--+.++..++|.-. |.+.+++ +++++...|....... .||||++|=..|+.+|++.+.+|+..-. ..+|||.
T Consensus 8 VEDE~AirEl~~~~-----L~~~gy~v~~A~d~~~A~~~~~E~-~PDLILLDWMLPG~SGIel~R~Lr~~~~Tr~iPIIM 81 (226)
T TIGR02154 8 VEDEPAIRELIAYN-----LEKAGYDVVEAGDGDEALTLINER-LPDLILLDWMLPGTSGIELARRLRREPETRAIPIIM 81 (226)
T ss_pred EECCHHHHHHHHHH-----HCCCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEE
T ss_conf 70826899999998-----416894699807979999998607-998899614789975699998734763314888177
Q ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 81687189999999765626431899989999976310233222345675379997469887756899999999996269
Q gi|254780725|r 112 IGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFA 191 (427)
Q Consensus 112 ig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~ 191 (427)
++...+-.--..-+..||.||++||+++.||++-|+.++.+..|.. ...+|.|-+- .|=. ..
T Consensus 82 LTARGeE~Drv~GLetGADDYvtKPFSp~EL~ARikAVLRR~~P~~--~~~~i~~~~l---------------~lD~-~~ 143 (226)
T TIGR02154 82 LTARGEEEDRVRGLETGADDYVTKPFSPRELLARIKAVLRRIRPEL--SDEVIEVGDL---------------ELDP-VA 143 (226)
T ss_pred EECCCCCCCCCCCCCCCCCCEEECCCCHHHHHHHHHHHHHCCCHHH--HCCEEEECCE---------------EECC-CC
T ss_conf 4055560001131136887503678865889999999983167124--2020110347---------------7751-02
Q ss_pred CCEEEEECCCCCCCC
Q ss_conf 949999787989860
Q gi|254780725|r 192 METLLADLDLPYGTA 206 (427)
Q Consensus 192 ~~VlLvDlDl~~g~~ 206 (427)
+||..-+-.+.-|-+
T Consensus 144 HRV~~~~~~~~lGPT 158 (226)
T TIGR02154 144 HRVKRGGQPLELGPT 158 (226)
T ss_pred CEEEECCEECCCCCH
T ss_conf 404313602146870
No 89
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.24 E-value=4.5e-10 Score=81.12 Aligned_cols=119 Identities=13% Similarity=0.212 Sum_probs=97.4
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
++|.---+.+-+...++...+. ...-.+....++..++++.+...+ ||++|+|+++++.++++.+..+.+. .|+++
T Consensus 4 ~~VlIvDDh~l~r~gl~~~l~~--~~~~~vv~~a~~~~~~~~~l~~~~-~DvvllD~~lp~~~g~~~i~~i~~~-~p~~~ 79 (210)
T PRK09935 4 ASVIIMDEHPIVRMSIEVLLQK--NSNIQVVLKTDDSRITIDYLRTYP-VDLVILDIELPGTDGFTLLKRIKQI-QETVK 79 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHCC-CCEEEECCCCCCCCCCCHHHHHHHH-CCCCC
T ss_conf 8899985969999999999962--989289999899999999997479-9999988999998864056789873-89970
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
|++++...|.....+++++|++.|+.|+.+.+++..++..+..
T Consensus 80 ilvls~~~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~ai~~v~~ 122 (210)
T PRK09935 80 VLFLSSKSECFYAGRAIRAGANGFVSKRKDLNDIYNAVQMILS 122 (210)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 8997176729999999966877688678999999999999985
No 90
>PRK13435 response regulator; Provisional
Probab=99.20 E-value=6.8e-10 Score=79.99 Aligned_cols=113 Identities=12% Similarity=0.161 Sum_probs=84.9
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEE-E-ECCCHHHHHHHHHCCCCCCEEEEECCCC-CCCHHHHHHHHHHHCCCCC
Q ss_conf 99983898999999988641100202237-3-0699899999986189984999980598-7677889998885328998
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMR-I-TRGSIAEAVSCFSDSSTPDLIIVQTKVD-SREVLSALEPLAEVCDSGT 107 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v-~~g~~~~A~~~~~~~~~P~~iivd~~~~-~~~~~~~l~~la~~~~p~~ 107 (427)
|..--++......++... .+.+.. + ..++..+|++..+.. .|+++++|++++ +.++++.+.+|.+ .+++
T Consensus 4 ILIVEDe~~i~~~l~~~L-----~~~G~~vv~~A~~~~eAl~~~~~~-~PDlvllDi~LpdG~~G~e~~r~l~~--~~~i 75 (141)
T PRK13435 4 VLIVEDEALIALELEKLL-----EEAGHQVVGIASTSEQALALGRRA-QPDVALVDIRLADGPTGVEVARRLSI--DGGV 75 (141)
T ss_pred EEEECCCHHHHHHHHHHH-----HHCCCEEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCCHHHHHHHHHH--CCCC
T ss_conf 999899899999999999-----987997999759999999997659-99899978878999989999999987--5998
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC
Q ss_conf 08998168718999999976562643189998999997631023322
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE 154 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~ 154 (427)
+||.++.+.|. ...+.+|+.||+.||+++.++.+++.++..+..
T Consensus 76 pvI~lTa~~d~---~~~~~aGA~dyl~KPf~~~eL~~ai~~~~~rr~ 119 (141)
T PRK13435 76 EVIFMTANPER---VGHDFAGALGVIAKPYSLRQVARALSYVAARRV 119 (141)
T ss_pred CEEEEECCHHH---HHHHHCCCCCEEECCCCHHHHHHHHHHHHHHCC
T ss_conf 38999777998---601345998589899998999999999997156
No 91
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.20 E-value=4.5e-10 Score=81.10 Aligned_cols=119 Identities=13% Similarity=0.182 Sum_probs=97.2
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
|+|.-.-+.+-....++...+. ...-.+.....+..+|++.+...+ |+++|+|+++++.++++.+.+|.+. .|.++
T Consensus 7 irVlIvDDh~l~r~gl~~~L~~--~~~~~vv~~a~~~~ea~~~~~~~~-pDlvllDl~lp~~~G~~~~~~l~~~-~~~~~ 82 (216)
T PRK10651 7 ATILLIDDHPMLRTGVKQLISM--APDITVVGEASNGEQGIELAESLD-PDLILLDLNMPGMNGLETLDKLREK-SLSGR 82 (216)
T ss_pred CEEEEECCCHHHHHHHHHHHHH--CCCEEEEEEECCHHHHHHHHHHCC-CCEEEEECCCCCCCCCCCCCCCCCC-CCCCC
T ss_conf 7899983999999999999975--899389999899999999987079-9999995999998887642323345-78874
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8998168718999999976562643189998999997631023
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
||+++..++.....+++++|+.+|+.||.+.+++++++..+..
T Consensus 83 iivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~L~~ai~~v~~ 125 (216)
T PRK10651 83 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAA 125 (216)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 6763055418899999966987898378999999999999985
No 92
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.20 E-value=2.7e-10 Score=82.45 Aligned_cols=114 Identities=8% Similarity=0.136 Sum_probs=90.0
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 9998389899999998864110020223730-699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
|..--+++.....+... |.+.++.|. ..+..+|.+.+... .|++||+|+++|+.++++.+.+|++. ..+||
T Consensus 4 ILlVEDd~~l~~~l~~~-----L~~~g~~v~~a~~g~~a~~~~~~~-~~DlvilDi~LP~~dG~~l~~~iR~~--~~~Pi 75 (240)
T PRK10701 4 IVFVEDDAEVGSLIAAY-----LAKHDIDVTVEPRGDRAEETILRE-QPDLVLLDIMLPGKDGMTICRDLRPK--WSGPI 75 (240)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCEEEEECCCC--CCCCE
T ss_conf 99997999999999999-----988799999989999999998617-99999992899767887876311025--89878
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
|+++..++..-....+..|+.|||.||+++.++++.++..+..
T Consensus 76 I~lta~~~~~d~v~gl~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (240)
T PRK10701 76 VLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred EEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9994057578899999768877641799879999999999965
No 93
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.19 E-value=3.6e-10 Score=81.66 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
--+++.....+... |.+.++.| ...+..+|.+.+.. .|++||+|+.+|+.++++.+.++++. ..+|||++
T Consensus 7 VEDd~~l~~~l~~~-----L~~~G~~V~~a~~g~~al~~l~~--~~DlvilDi~LP~~dG~~l~~~iR~~--~~~PII~l 77 (232)
T PRK10955 7 VDDDRELTSLLKEL-----LEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKALRQT--HQTPVIML 77 (232)
T ss_pred EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEEECC--CCCCEEEE
T ss_conf 96989999999999-----98889999998999999999648--98999991899988867230124407--88878998
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 1687189999999765626431899989999976310233
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
+..++..-....++.|+.||+.||+++.++.+.+..++.+
T Consensus 78 ta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR 117 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 0556768899999769757633899989999999999761
No 94
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.19 E-value=4e-10 Score=81.42 Aligned_cols=114 Identities=16% Similarity=0.271 Sum_probs=93.5
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 999838989999999886411002022373-0699899999986189984999980598767788999888532899808
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
|..--++++....+... +.+.+..| ...+..+|...+... .|+++|+|+.+|..++++.+..+++. ..++|
T Consensus 4 ILivEDd~~l~~~l~~~-----L~~~g~~V~~a~~~~~al~~~~~~-~~DlviLDi~lP~~dG~~l~~~iR~~--~~~pI 75 (225)
T PRK10529 4 VLIVEDEQAIRRFLRTA-----LEGDGMRVFEAETLQRGLLEAATR-KPDLIILDLGLPDGDGIEFIRDLRQW--SAIPV 75 (225)
T ss_pred EEEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCCEEEEECC--CCCCE
T ss_conf 99997989999999999-----998899999979999999986117-99899980788888876331000127--99878
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 9981687189999999765626431899989999976310233
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
|+++..++..-....+..|+.||+.||+++.++.+.+..++.+
T Consensus 76 I~lta~~~~~d~i~~l~~GADDYl~KPf~~~eL~aRi~a~lrr 118 (225)
T PRK10529 76 IVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRR 118 (225)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 9995468989999999769876540785459999999999714
No 95
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.17 E-value=1.1e-09 Score=78.63 Aligned_cols=113 Identities=19% Similarity=0.320 Sum_probs=90.7
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD 114 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~ 114 (427)
.+|+..-+-|++-.- ..+..-+.....+++++|...+..- .|+||++|+-+|.+++++.|..+.+. ...+-||+|+.
T Consensus 6 iEDD~mVaeih~~yv-~~~~gF~~vg~A~~~~ea~~~i~~~-~pDLILLDiYmPd~~Gi~lL~~ir~~-~~~~DVI~iTA 82 (224)
T COG4565 6 IEDDPMVAEIHRRYV-KQIPGFSVVGTAGTLEEAKMIIEEF-KPDLILLDIYMPDGNGIELLPELRSQ-HYPVDVIVITA 82 (224)
T ss_pred ECCCHHHHHHHHHHH-HHCCCCEEEEEECCHHHHHHHHHHH-CCCEEEEEECCCCCCCHHHHHHHHHC-CCCCCEEEEEC
T ss_conf 708658999999999-7389953898606499999999840-89979996026798507799999846-89978899953
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 871899999997656264318999899999763102
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
.+|....++++|.||-|||.||+..+-+..++.+-.
T Consensus 83 A~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~ 118 (224)
T COG4565 83 ASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYR 118 (224)
T ss_pred CCHHHHHHHHHHCCCHHHEECCEEHHHHHHHHHHHH
T ss_conf 443789999996582322056340999999999999
No 96
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.17 E-value=9.4e-11 Score=85.27 Aligned_cols=51 Identities=31% Similarity=0.400 Sum_probs=40.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPI 215 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~ 215 (427)
.|.|+++||||||||+|+.+|+.+|+. |++|++|-.|+. .+++-.|+.+-.
T Consensus 3 riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPA-hsL~d~f~~elg 53 (322)
T COG0003 3 RIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPA-HSLGDVFDLELG 53 (322)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCC-CCHHHHHCCCCC
T ss_conf 799993688545899999999999975-990799984898-744765423047
No 97
>PRK11173 two-component response regulator; Provisional
Probab=99.17 E-value=1.1e-09 Score=78.64 Aligned_cols=116 Identities=10% Similarity=0.149 Sum_probs=92.5
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 7305999838989999999886411002022373-069989999998618998499998059876778899988853289
Q gi|254780725|r 27 PRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS 105 (427)
Q Consensus 27 ~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p 105 (427)
|+|-| --+++.....+... +...++.| ..++..+|.+.+... .|++||+|+.++..++++.+.++++. .
T Consensus 4 ~~ILi--VEDD~~~~~~l~~~-----L~~~G~~V~~a~~~~ea~~~l~~~-~~DlvilDi~lp~~~G~~l~~~iR~~--~ 73 (237)
T PRK11173 4 PHILI--VEDELVTRNTLKSI-----FEAEGYDVFEATDGAEMHQILSEN-DINLVIMDINLPGKNGLLLARELREQ--A 73 (237)
T ss_pred CEEEE--EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHHHC--C
T ss_conf 98999--95989999999999-----998899999989999999998638-99899993899988730355566516--8
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 98089981687189999999765626431899989999976310233
Q gi|254780725|r 106 GTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 106 ~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
.+++|+++..++..-...++.+|++||+.||++..++...+..++.+
T Consensus 74 ~~piI~lta~~~~~~~i~~l~~GaddYi~KPf~~~EL~arv~~~l~r 120 (237)
T PRK11173 74 NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (237)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHH
T ss_conf 84789994325778899999769767887898879999999999866
No 98
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.16 E-value=5.2e-10 Score=80.74 Aligned_cols=115 Identities=13% Similarity=0.174 Sum_probs=93.0
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEE-CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 59998389899999998864110020223730-69989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRIT-RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~-~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
.|..--+++.....+... |.+.++.|. ..+..+|.+.+... .|+++|+|+.++..++++.+..+++. .+++
T Consensus 4 kILlVEDD~~l~~~l~~~-----L~~~g~~V~~~~~~~~a~~~l~~~-~~DlvilDi~lp~~~G~el~~~iR~~--~~~p 75 (224)
T PRK10766 4 HILVVEDEPVTRARLQGY-----FEQEGYRVSEAASGAGMREIMQNQ-HVDLILLDINLPGEDGLMLTRELRSR--STVG 75 (224)
T ss_pred EEEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHC--CCCC
T ss_conf 199991999999999999-----998799999989999999999608-99999988999988766137676304--7855
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89981687189999999765626431899989999976310233
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
||+++..++..-...++++|+.||+.||++..++...+..++.+
T Consensus 76 iI~lta~~~~~~~i~al~~GaddYl~KPf~~~eL~ari~allrR 119 (224)
T PRK10766 76 IILVTGRTDSIDRIVGLEMGADDYVTKPFELRELLVRVKNLLWR 119 (224)
T ss_pred EEEECCCCCHHHHHHHHHCCCHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf 68633558989999999849414513999889999999999725
No 99
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.16 E-value=1.5e-09 Score=77.86 Aligned_cols=120 Identities=16% Similarity=0.118 Sum_probs=96.5
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289980
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
|.|.-.-+.+-....++...+. .....+.-...+..++++.+... .||++|+|+.+++.++++.+..|.+. .|.++
T Consensus 7 irIlIvDD~~l~r~gl~~~L~~--~~~~~vv~~a~~~~~~~~~~~~~-~pDlvllD~~lp~~~G~~~~~~l~~~-~p~~~ 82 (215)
T PRK10403 7 FQVLIVDDHPLMRRGVRQLLEL--DPGFEVVAEAGDGASAIDLANRL-DIDVILLDLNMKGMSGLDTLNALRRD-GVTAQ 82 (215)
T ss_pred CEEEEECCCHHHHHHHHHHHHH--CCCEEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCCCHHHHHHHC-CCCCC
T ss_conf 5799983989999999999975--89928999989999999998644-99899980899899874123356541-88773
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 89981687189999999765626431899989999976310233
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
||+++...+.....+++++|++.|+.|+.++.++..++..+...
T Consensus 83 iivlt~~~~~~~~~~al~~Ga~gyl~K~~~~~~l~~ai~~v~~G 126 (215)
T PRK10403 83 IIILTVSDASSDIFALIDAGADGYLLKDSDPEVLLEAIRAGAKG 126 (215)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 68863243236789987468766884899999999999999849
No 100
>PRK13557 histidine kinase; Provisional
Probab=99.15 E-value=2.7e-09 Score=76.34 Aligned_cols=11 Identities=18% Similarity=0.344 Sum_probs=4.8
Q ss_pred CEEEEECCCCC
Q ss_conf 38999565898
Q gi|254780725|r 331 PYLVLNQVKTP 341 (427)
Q Consensus 331 ~~iVlNr~~~~ 341 (427)
+-+|+.-..+|
T Consensus 459 ~Dlvl~D~~MP 469 (538)
T PRK13557 459 VDLLFTDLIMP 469 (538)
T ss_pred CCEEEECCCCC
T ss_conf 88998877799
No 101
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.14 E-value=1.1e-08 Score=72.49 Aligned_cols=163 Identities=14% Similarity=0.208 Sum_probs=107.1
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE--ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 305999838989999999886411002022373--069989999998618998499998059876778899988853289
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI--TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS 105 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v--~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p 105 (427)
+|.|...-++......++...+. ...+.| ...+..+|++.+... .||+|++|+.|+.+|+++.++++.+.+ |
T Consensus 2 kirVLIVDDs~~~R~~l~~~L~~----~~~~eVv~~A~nG~eAl~~~~~~-~pDvVllDi~MP~mdGie~l~~I~~~~-p 75 (345)
T PRK00742 2 KIRVLVVDDSAFMRRLLSEILNS----DPDIEVVGTARDGLEAVEKIKKL-NPDVITLDVEMPVMDGIEALRKIMALR-P 75 (345)
T ss_pred CCEEEEEECCHHHHHHHHHHHHH----CCCEEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHHHC-C
T ss_conf 82699992988999999999972----89908999989999999998860-999999837889998799999999758-9
Q ss_pred CCEEEEEECC--CCHHHHHHHHHCCCCEEECCCCC-----HHH----HHHHHHHCCCCC-----C----------CCCCC
Q ss_conf 9808998168--71899999997656264318999-----899----999763102332-----2----------23456
Q gi|254780725|r 106 GTKVIVIGDT--NDVSLYRALISNHVSEYLIEPLS-----VAD----IINSISAIFTPQ-----E----------EGKGS 159 (427)
Q Consensus 106 ~~~Vivig~~--~d~~l~r~l~r~Gv~dyl~~P~~-----~~~----l~~ai~~~~~~~-----~----------~~~~~ 159 (427)
++||+++.. .+.....++++.|+.||+.||.. ..+ |++.++.+.... . .....
T Consensus 76 -~pVimvSs~~~~~~~~~~~Al~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (345)
T PRK00742 76 -TPVVMVSSLTERGAEITLEALELGAVDFVPKPFLGISEGMDAAAELLAEKVRAAARAARLAAAAPAAAPAALKAAPSGS 154 (345)
T ss_pred -CCEEEEEECCCCCHHHHHHHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf -8779997225556599999997592248957888765329999999999999985186556788888888887777788
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 75379997469887756899999999996269949999787
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..++|++..+-||..+ +..=|. .|-......++++-.=
T Consensus 155 ~~~vV~IGaStGGp~a--L~~il~-~Lp~~~p~pivivQHm 192 (345)
T PRK00742 155 SEKLVAIGASTGGPEA--LQKVLT-QLPANFPAPIVIVQHM 192 (345)
T ss_pred CCCEEEEEECCCCHHH--HHHHHH-HCCCCCCCCEEEEECC
T ss_conf 8718999837568999--999998-5898899748999658
No 102
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.13 E-value=2.8e-09 Score=76.18 Aligned_cols=111 Identities=14% Similarity=0.178 Sum_probs=90.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 89899999998864110020223730699899999986189984999980598767788999888532899808998168
Q gi|254780725|r 36 VTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDT 115 (427)
Q Consensus 36 ~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~ 115 (427)
+.+-....++...+.. ...+.-...+..++++.+... .||++|+|+++++.++++.+..+.+.+ |.++|++++..
T Consensus 8 Dh~lvr~gl~~ll~~~---~~~vv~~~~~~~~~l~~~~~~-~pDvvllDl~lp~~~G~~~~~~ir~~~-~~~~viv~s~~ 82 (204)
T PRK09958 8 DHPLAIAAIRNLLIKN---DIEILAELTEGGSAVQRVETL-KPDIVIIDVDIPGVNGIQVLETLRKRQ-YSGIIIIVSAK 82 (204)
T ss_pred CCHHHHHHHHHHHHHC---CCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHC-CCEEEEEEECC
T ss_conf 9899999999999868---998999979999999998743-979999958999998416788898727-98059999724
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 718999999976562643189998999997631023
Q gi|254780725|r 116 NDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 116 ~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
+|.....+++++|++.|+.|..+.+++.+++..+..
T Consensus 83 ~~~~~~~~a~~~Ga~g~l~K~~~~~~l~~aI~~v~~ 118 (204)
T PRK09958 83 NDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred CCCHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 652114433526863799789999999999999977
No 103
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.13 E-value=3.6e-09 Score=75.59 Aligned_cols=112 Identities=12% Similarity=0.210 Sum_probs=86.9
Q ss_pred EEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99838989999999886411002022373-06998999999861899849999805987677889998885328998089
Q gi|254780725|r 32 HVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI 110 (427)
Q Consensus 32 ~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi 110 (427)
.---++++....+... |...++.| ...+..+|.+.+... .|+++|+|+++|..++++.+..+++. ..+++|
T Consensus 5 LlVEDD~~l~~~l~~~-----L~~~g~~v~~a~~~~~~~~~l~~~-~~DlvIlDi~lp~~~Gl~~~~~ir~~--~~~pii 76 (241)
T PRK13856 5 LVIDDDVAMRHLIVEY-----LTIHAFKVTAVADSQQFNRVLSSE-TVDVVVVDLNLGREDGLEIVRSLATK--SDVPII 76 (241)
T ss_pred EEEECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCCHHHHHHHCCC--CCCCEE
T ss_conf 9996989999999999-----987799999989999999998659-99999996999876613455564036--997369
Q ss_pred EEEC-CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 9816-8718999999976562643189998999997631023
Q gi|254780725|r 111 VIGD-TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 111 vig~-~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
+++. ..|..--..++..|+.|||.||++..++++.+..++.
T Consensus 77 ilt~~~~~~~d~i~~l~~GADDYl~KPf~~~EL~aRi~~~lr 118 (241)
T PRK13856 77 IISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred EEECCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 997267878999999876998899777677799999999987
No 104
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.11 E-value=6.9e-09 Score=73.83 Aligned_cols=120 Identities=9% Similarity=0.127 Sum_probs=93.1
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCC---CCHHHHHHHHHHHCC
Q ss_conf 30599983898999999988641100202237306998999999861899849999805987---677889998885328
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDS---REVLSALEPLAEVCD 104 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~---~~~~~~l~~la~~~~ 104 (427)
+|.|.---+.+-....++...+. .....+.-...+..++++.+... .|+++|+|+++|+ .++++.+..+.+. .
T Consensus 3 ~irIlIvDDh~lvr~Gl~~~L~~--~~~~~vvg~a~~~~~~~~~~~~~-~pDvvllDl~mpg~~~~dGl~~~~~i~~~-~ 78 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQ--IEWVNVVGEFEDSTALINNLPKL-DAHVLITDLSMPGDKYGDGITLIKYIKRH-F 78 (216)
T ss_pred CCEEEEECCHHHHHHHHHHHHCC--CCCCEEEEEECCHHHHHHHHHHC-CCCEEEEECCCCCCCCCCHHHHHHHHHHH-C
T ss_conf 88899988979999999999815--99968999879999999998623-98989982677999887899999999985-8
Q ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 99808998168718999999976562643189998999997631023
Q gi|254780725|r 105 SGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 105 p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
|+++||+++.+++.....+++++|++.|+.|-..++++..++..+..
T Consensus 79 p~~~vivls~~~~~~~v~~al~~Ga~Gyl~K~~~~~~L~~AI~~v~~ 125 (216)
T PRK10840 79 PSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 99808998477878999999858974899878999999999999987
No 105
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.11 E-value=1.6e-09 Score=77.69 Aligned_cols=116 Identities=15% Similarity=0.241 Sum_probs=92.6
Q ss_pred EEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEE
Q ss_conf 99983898999999988641100202237306998999999861899849999805987677889998885328998089
Q gi|254780725|r 31 VHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVI 110 (427)
Q Consensus 31 ~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vi 110 (427)
||..-+|+.....+... +..+++++..-....+.-.-....-|-.+|+|+.||+.++++..++|++. .+..|||
T Consensus 7 V~vVDDD~~vr~al~~L-----l~s~G~~v~~~~s~~~fL~~~~~~~pGclllDvrMPg~sGlelq~~L~~~-~~~~PVI 80 (202)
T COG4566 7 VHVVDDDESVRDALAFL-----LESAGFQVKCFASAEEFLAAAPLDRPGCLLLDVRMPGMSGLELQDRLAER-GIRLPVI 80 (202)
T ss_pred EEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHC-CCCCCEE
T ss_conf 89976848899999999-----98389536650479999830667889769985578888508999999953-9998879
Q ss_pred EEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 981687189999999765626431899989999976310233
Q gi|254780725|r 111 VIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 111 vig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
+|+.+.||....++|++|+-|||.||++..++++++.+.+..
T Consensus 81 fiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~ 122 (202)
T COG4566 81 FLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALAR 122 (202)
T ss_pred EEECCCCHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 982788728999999742156774788548999999999998
No 106
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.11 E-value=8e-09 Score=73.41 Aligned_cols=178 Identities=13% Similarity=0.131 Sum_probs=108.9
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
+-|-|.|...|+||||+++-|..+|++ +|.+|.-.-. +|+-+|+.+.....-+..
T Consensus 4 p~lmI~gt~S~~GKT~vt~gL~r~l~~-rG~~VapFK~------------------------GPDyIdp~~~~~a~g~~~ 58 (451)
T PRK01077 4 PALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKV------------------------GPDYIDPAFHAAATGRPS 58 (451)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCC------------------------CCCCCCHHHHHHHHCCCC
T ss_conf 879998689999789999999999996-8794575357------------------------857629899999978975
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-----------CHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 980687248761203207999999989998512888997388888-----------989999986201254357877688
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-----------NSWTQEVLTLSDKVVITTSLDLAG 310 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-----------~~~~~~~L~~AD~vviV~~p~~~s 310 (427)
.+| ..+.+.++.+..++....+.+|++||.--.+. +....+-+..+. |++|++.+-.
T Consensus 59 ~nL----------D~~l~~~~~v~~~~~~~~~~~D~~viEG~mGlyDG~~~~~~~gS~aeiA~~l~~P-ViLViD~~~~- 126 (451)
T PRK01077 59 RNL----------DSWMMGEDLVRALFARAAGGADIAVIEGVMGLFDGAGGDPDKGSTADIARLLGAP-VVLVVDASGM- 126 (451)
T ss_pred CCC----------CHHHCCHHHHHHHHHHHCCCCCEEEEEECHHCCCCCCCCCCCCCHHHHHHHHCCC-EEEEECCCCH-
T ss_conf 358----------8344899999999997546688899850101134545677777789999870998-8999846620-
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCC
Q ss_conf 9999999999998198767538999565898752005999999848953799068799999988479
Q gi|254780725|r 311 LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSG 377 (427)
Q Consensus 311 lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G 377 (427)
.+....++.-+....+...-..+|+|++..++..++-.+.++ .+|.++.++||++....-..-..|
T Consensus 127 ~~s~aa~v~G~~~~~~~~~I~GvIlNk~~g~~h~~ll~~~ie-~~gvpvlG~lP~~~~l~lpeRHLG 192 (451)
T PRK01077 127 AQSAAALVLGFARFDPDLNIAGVILNRVGSERHYQLLREALE-ELGLPVLGALPRDAALALPERHLG 192 (451)
T ss_pred HHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHH-HCCCCEEEEECCCCCCCCCCCCCC
T ss_conf 899999999999759778774899624787668999999998-639957986157633456421257
No 107
>TIGR01387 cztR_silR_copR heavy metal response regulator; InterPro: IPR006291 Members of this family contain a response regulator receiver domain and an associated transcriptional regulatory region. This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members are encoded by genes adjacent to genes which code for a member of the heavy metal sensor histidine kinase family (IPR006290 from INTERPRO), its partner in the two-component response regulator system. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0000160 two-component signal transduction system (phosphorelay), 0007600 sensory perception.
Probab=99.10 E-value=9.6e-11 Score=85.22 Aligned_cols=142 Identities=12% Similarity=0.147 Sum_probs=110.4
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD 114 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~ 114 (427)
-+.|-|++-++++ |+.++..|...+==--.-|++.+.-=++||+|++.|++|+++-|++|++- ...+||+.++.
T Consensus 5 EDeqkT~~YlqqG-----LsE~GYvvD~~~nG~DGL~lA~~~~Y~liILDvmLPG~DGW~vl~~LR~~-~~~~PVl~LTA 78 (219)
T TIGR01387 5 EDEQKTAEYLQQG-----LSESGYVVDIASNGRDGLHLAEKDDYDLIILDVMLPGMDGWQVLKALRRS-GKETPVLFLTA 78 (219)
T ss_pred ECCCCHHHHHHCC-----CCCCCEEEEEEECCCCHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCC-CCCCCEEEEEC
T ss_conf 3086026765305-----20123479887768624754368883089963258895068999998407-89873488833
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCC-------------------CCCEEEEEEECCCCCCH
Q ss_conf 87189999999765626431899989999976310233222345-------------------67537999746988775
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKG-------------------SSGCSISFIGSRGGVGS 175 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~-------------------~~grvIav~g~KGGvGk 175 (427)
.+++.--.+-+..||.|||+||++-.||++.++.++..+..... |.++.|..++
T Consensus 79 ~D~v~DkvkGLd~GAdDYLvKPF~F~ELlARvR~~LR~~~~~~~~evl~i~DL~~D~~~~~v~R~~~~I~LT~------- 151 (219)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFEFAELLARVRTLLRRSESLESTEVLEIADLELDVVRRRVFRGSKRIELTR------- 151 (219)
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEECCCEECCCEEEEEECCEEEEECH-------
T ss_conf 7884543530114786541378776037999998767752037676268605575121038875682687303-------
Q ss_pred HHHHHHHHHHHHHHCC
Q ss_conf 6899999999996269
Q gi|254780725|r 176 STIAHNCAFSIASVFA 191 (427)
Q Consensus 176 TTiA~nLA~~LA~~~~ 191 (427)
==..|=+.|.++.|
T Consensus 152 --kEF~LL~lL~~r~G 165 (219)
T TIGR01387 152 --KEFALLELLMRRTG 165 (219)
T ss_pred --HHHHHHHHHHHHCC
T ss_conf --67899999997488
No 108
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator; InterPro: IPR014264 Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC (see Q06065 from SWISSPROT). These proteins have a Fis family DNA binding sequence, a response regulator receiver domain, and sigma-54 interaction domain. They are found strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria, where members of IPR014265 from INTERPRO and IPR014266 from INTERPRO also occur..
Probab=99.10 E-value=6.2e-10 Score=80.23 Aligned_cols=139 Identities=14% Similarity=0.179 Sum_probs=110.0
Q ss_pred EEECCCHHHHHHHHHCCCCCCEEEEECCCCC-----CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEE
Q ss_conf 7306998999999861899849999805987-----67788999888532899808998168718999999976562643
Q gi|254780725|r 59 RITRGSIAEAVSCFSDSSTPDLIIVQTKVDS-----REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYL 133 (427)
Q Consensus 59 ~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~-----~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl 133 (427)
.+-++.=..|+..++.+. |.||.+|++.|| ..+|..|+++-++ .|.||||||+..+|-.=..+++++||+||.
T Consensus 24 ~~~A~DR~sAiA~vRRhe-P~VVTLDLGLPPd~d~a~EGl~~L~qIL~~-~P~TKVIViTGN~~r~NAlkAi~lGAYDFy 101 (451)
T TIGR02915 24 VAVAADRESAIALVRRHE-PAVVTLDLGLPPDADGASEGLAALQQILAI-APDTKVIVITGNDDRENALKAIGLGAYDFY 101 (451)
T ss_pred EEEECCHHHHHHHHHCCC-CCEEECCCCCCCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCHHHHHHHHCCCCCCC
T ss_conf 355347578999860569-964773675578988745899999999963-898048998668983889999643751013
Q ss_pred CCCCCHHHHHHHHHHCCCCC-------------CCCCC----------------------CCCEEEEEEECCCCCCHHHH
Q ss_conf 18999899999763102332-------------22345----------------------67537999746988775689
Q gi|254780725|r 134 IEPLSVADIINSISAIFTPQ-------------EEGKG----------------------SSGCSISFIGSRGGVGSSTI 178 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~~~~~-------------~~~~~----------------------~~grvIav~g~KGGvGkTTi 178 (427)
.||++++.|.=.|.|.|.-. .++.. ..+-+-+++=+=.|+||=-+
T Consensus 102 qKP~d~d~L~liv~RAf~L~~Le~ENRrL~~~~~~Gst~~~Gli~~~~~m~kic~tIekvA~sd~TvllLGESGTGKEV~ 181 (451)
T TIGR02915 102 QKPIDPDVLKLIVDRAFRLYTLETENRRLQSALGGGSTALEGLITSSPGMQKICRTIEKVAPSDITVLLLGESGTGKEVL 181 (451)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHH
T ss_conf 57875789999999988888888876998740688741036522068506789888652120000130104667117899
Q ss_pred HHHHHHHHHHHCCCCEEEEECC
Q ss_conf 9999999996269949999787
Q gi|254780725|r 179 AHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 179 A~nLA~~LA~~~~~~VlLvDlD 200 (427)
|-.+ +.++.+..++-+-|.|-
T Consensus 182 ArA~-H~~S~R~~~~FVAINCA 202 (451)
T TIGR02915 182 ARAL-HELSDRKDKRFVAINCA 202 (451)
T ss_pred HHHH-HHHCCCCCCCEEEEECC
T ss_conf 9898-42057897773444167
No 109
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.08 E-value=2.1e-08 Score=70.88 Aligned_cols=202 Identities=17% Similarity=0.204 Sum_probs=109.7
Q ss_pred HHHHHHHHHCCCCEEECC--------CCCHHHHHHHHHHC----CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 899999997656264318--------99989999976310----233222345675379997469887756899999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLIE--------PLSVADIINSISAI----FTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFS 185 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~--------P~~~~~l~~ai~~~----~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~ 185 (427)
-.+|..|++.|+++.+.. -....+..+.+.+. +..........+|+|+|+| --||||||+.+=||..
T Consensus 155 ~~l~~~L~~~Gvs~~la~~l~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~~~vvalVG-PTGVGKTTTiAKLAA~ 233 (412)
T PRK05703 155 AKLYKRLKESGLSPEIADKLLKLLLEDMNPREAWRYLLELLANMLPTRVEDILEQGGVVALVG-PTGVGKTTTLAKLAAR 233 (412)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHH
T ss_conf 999999998699999999999986642897999999999999757888766545673699988-8887567699999999
Q ss_pred HHHHCCC-CEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHH
Q ss_conf 9962699-499997879898603343899878988863184561243376532024898068724876120320799999
Q gi|254780725|r 186 IASVFAM-ETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMI 264 (427)
Q Consensus 186 LA~~~~~-~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l 264 (427)
++...++ +|.||-+|..--.+.-. |+.+..- -|+.+-. -.+++.+
T Consensus 234 ~~l~~~~~kV~lIT~DtyRigA~eQ-----------------------Lk~Ya~i--lgvp~~v---------~~~~~~l 279 (412)
T PRK05703 234 YALEEGKDKVALITLDTYRIGAVEQ-----------------------LKTYAKI--MGIPVKV---------AYDPKEL 279 (412)
T ss_pred HHHHCCCCEEEEEEECCCCHHHHHH-----------------------HHHHHHH--CCCEEEE---------ECCHHHH
T ss_conf 9997299817999837677779999-----------------------9999997--1973798---------4799999
Q ss_pred HHHHHHHHHCCCEEEECCCCCC--CHHH----HHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 9989998512888997388888--9899----999862--0125435787768899999999999981987675389995
Q gi|254780725|r 265 VPVLDILEQIFPLVILDVPHVW--NSWT----QEVLTL--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 265 ~~ll~~l~~~yd~VIiD~p~~~--~~~~----~~~L~~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
...++.++ .+|+|+||++... +... ...+.. .+.+++|...+ ..-++..++++.+...++. .+|+.
T Consensus 280 ~~al~~~~-~~dlILIDTaG~s~~d~~~~~eL~~~~~~~~~~~~~LVlsat-~~~~dl~~i~~~f~~~~~~----~lI~T 353 (412)
T PRK05703 280 AKALEQLA-NCDLILIDTAGRSQRDPRLISELKALIENSKPIDVYLVLSAT-TKYRDLKDIVKHFSRLPLD----GLILT 353 (412)
T ss_pred HHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCC-CCHHHHHHHHHHHCCCCCC----EEEEE
T ss_conf 99998715-899799968988978999999999998624887189997598-9989999999984679998----79997
Q ss_pred CCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf 6589875200599999984895379
Q gi|254780725|r 337 QVKTPKKPEISISDFCAPLGITPSA 361 (427)
Q Consensus 337 r~~~~~~~~i~~~~~~~~lg~~~~~ 361 (427)
+.+.....- ..=.+.-..+.++.+
T Consensus 354 KlDEt~~~G-~il~~~~~~~lplsy 377 (412)
T PRK05703 354 KLDETSSLG-SILSLLIESGLPISY 377 (412)
T ss_pred EECCCCCCC-HHHHHHHHHCCCEEE
T ss_conf 112899862-999999998879699
No 110
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.07 E-value=1.9e-08 Score=71.06 Aligned_cols=139 Identities=11% Similarity=0.149 Sum_probs=95.7
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEE--ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 5999838989999999886411002022373--06998999999861899849999805987677889998885328998
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRI--TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGT 107 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v--~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~ 107 (427)
.|...-++.-....+++..+. ...+.| ...+..+|++.+... .||+|++|+.|+.+|+++.+++|.+.+ | +
T Consensus 3 rVLIVDDs~~~R~~l~~~L~~----~~~~eVv~~A~~g~eAl~~~~~~-~pDvVllDi~MP~mdGie~l~~I~~~~-p-~ 75 (340)
T PRK12555 3 NVGIVDDSALAREALRRIIAR----RPDHRVLGVATDGLQARDLCKAQ-PPDVVLLDLEMPRMDGLTFLRRIMRRR-P-C 75 (340)
T ss_pred EEEEEECCHHHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHH-CCCEEEEECCCCCCCHHHHHHHHHHHC-C-C
T ss_conf 899990988999999999960----99948999989999999998861-999999727889998799999999878-9-9
Q ss_pred EEEEEECC--CCHHHHHHHHHCCCCEEECCCCC-----H----HHHHHHHHHCCCC---C-------C----CCCCCCCE
Q ss_conf 08998168--71899999997656264318999-----8----9999976310233---2-------2----23456753
Q gi|254780725|r 108 KVIVIGDT--NDVSLYRALISNHVSEYLIEPLS-----V----ADIINSISAIFTP---Q-------E----EGKGSSGC 162 (427)
Q Consensus 108 ~Vivig~~--~d~~l~r~l~r~Gv~dyl~~P~~-----~----~~l~~ai~~~~~~---~-------~----~~~~~~gr 162 (427)
+||+++.. .+.....+++++|+.||+.||.. . .++++.++.+... . . .......+
T Consensus 76 PVimvSs~~~~~~~~~~~AL~~GA~D~i~KP~~~~~~~~~~~~~~L~~ki~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (340)
T PRK12555 76 PVLIVSSLTEAGASITYEALGAGALDAVDKPKLGIGRGLDAYAQELLAKIDQAARALVRRLARAAAPAPAAPAPFRTTEK 155 (340)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCHHHEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 86998503565769999999779776684788775531999999999999998644245678888888998765578887
Q ss_pred EEEEEECCCCCCH
Q ss_conf 7999746988775
Q gi|254780725|r 163 SISFIGSRGGVGS 175 (427)
Q Consensus 163 vIav~g~KGGvGk 175 (427)
+|++.++-||..+
T Consensus 156 vv~IGaSTGGp~a 168 (340)
T PRK12555 156 LVAIGASAGGTEA 168 (340)
T ss_pred EEEEEECCCCHHH
T ss_conf 8999968899999
No 111
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.05 E-value=2.1e-08 Score=70.81 Aligned_cols=115 Identities=15% Similarity=0.169 Sum_probs=90.7
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 83898999999988641100202237306998999999861899849999805987677889998885328998089981
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
..+.+-...-++...+... .-.+....++..++++.+. ...|+++++|+++|+.++++.+..|.+. .|.++|++++
T Consensus 6 vDDh~l~r~gl~~~L~~~~--~~~vv~~a~~~~~~l~~~~-~~~pdvvl~Dl~mP~~~G~e~~~~l~~~-~p~~~vvvlt 81 (211)
T COG2197 6 VDDHPLVREGLRQLLELEP--DLEVVGEASNGEEALDLAR-ELKPDVVLLDLSMPGMDGLEALKQLRAR-GPDIKVVVLT 81 (211)
T ss_pred ECCCHHHHHHHHHHHHHCC--CCEEEEEECCHHHHHHHHH-CCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCCEEEEEE
T ss_conf 8097779999999998689--9669998278899999851-3799889983788998759999999986-8997299996
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 687189999999765626431899989999976310233
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
..++.....+++++|++.|+.|+.+++++.+++..+...
T Consensus 82 ~~~~~~~v~~~l~~Ga~gyl~K~~~~~~l~~ai~~v~~G 120 (211)
T COG2197 82 AHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAG 120 (211)
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 778989999999779969986799999999999999758
No 112
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.04 E-value=9e-09 Score=73.09 Aligned_cols=114 Identities=17% Similarity=0.272 Sum_probs=93.4
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 599983898999999988641100202237-3069989999998618998499998059876778899988853289980
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTK 108 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~ 108 (427)
|..-.-+|......+.+++ .+-++. +...+..+++...++. +|...+||+....++++..++.|++. +++++
T Consensus 11 ~lllvdDD~~f~~~LaRa~-----e~RGf~v~~a~~~~eal~~art~-~PayAvvDlkL~~gsGL~~i~~lr~~-~~d~r 83 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAM-----ERRGFAVVTAESVEEALAAARTA-PPAYAVVDLKLGDGSGLAVIEALRER-RADMR 83 (182)
T ss_pred EEEEECCCHHHHHHHHHHH-----HCCCCEEEEECCHHHHHHHHHCC-CCCEEEEEEEECCCCCHHHHHHHHHC-CCCCE
T ss_conf 0589618769999999998-----60686257614499999998517-98528898640688746899999824-97643
Q ss_pred EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 899816871899999997656264318999899999763102
Q gi|254780725|r 109 VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 109 Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
+||++....|....++++.|+.|||.||.+.+++.+++.+-.
T Consensus 84 ivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~~~~ 125 (182)
T COG4567 84 IVVLTGYASIATAVEAVKLGACDYLAKPADADDILAALLRRE 125 (182)
T ss_pred EEEEECCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCC
T ss_conf 898845117999999998624554079777689999986027
No 113
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.01 E-value=3.5e-08 Score=69.46 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=56.1
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHHCCCCC
Q ss_conf 0599983898999999988641100202237306998999999861899849999805987677889998-885328998
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEP-LAEVCDSGT 107 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~-la~~~~p~~ 107 (427)
-+|..+...+..+..+....... +..|..... .+.+.. ...++++++..++..+....+.. +...+....
T Consensus 537 ~~vlvve~~~~~~~~l~~~L~~~-----g~~v~~~~~---~~~l~~-~~~D~~li~~~~~~~~~~~~~~~~l~~~~~~~~ 607 (920)
T PRK11107 537 KRLLYVEPNSLAAQATLDLLSET-----PLEVTYSPT---LSQLPE-AHYDYLLLGCPVTFREPLTMLHERLAKAKSMTD 607 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHHC-----CCEEEECCC---HHHHHC-CCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 76999769778999999999974-----964575178---877513-688879961666665406678999863003578
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 08998168718999999976562643189998999997631
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
.++++....+...+..+.+.|+..+|.+|+....+..++..
T Consensus 608 ~~il~~~s~~~~~~~~~~~~~~~~~L~kPv~~~~L~~~L~~ 648 (920)
T PRK11107 608 FLILALPCHEQVNAEQLKQPGADACLSKPLSETRLLPALLT 648 (920)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCHHCCCCCCHHHHHHHHHC
T ss_conf 46997156434557887642530211277768899998722
No 114
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.01 E-value=1.7e-08 Score=71.40 Aligned_cols=118 Identities=10% Similarity=0.103 Sum_probs=93.2
Q ss_pred CCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC
Q ss_conf 730599983898999999988641100202237-3069989999998618998499998059876778899988853289
Q gi|254780725|r 27 PRISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS 105 (427)
Q Consensus 27 ~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p 105 (427)
+...|..- +|.++...+-... +.+.+.. ....+..+|++.+......|+|+.|+.||.+|+++...+|++. .|
T Consensus 680 ~~lrVLvV-EDn~~N~~v~~~~----L~~lG~~v~~A~nG~eAle~l~~~~~fDlVLmDi~MP~mDG~eatr~iR~~-~~ 753 (912)
T PRK11466 680 DGLRLLLI-EDNPLTQRITVEM----LNTSGAQVVAVGNAAQALETLQNSEPFAAALVDFDLPDYDGITLARQLAQQ-YP 753 (912)
T ss_pred CCCEEEEE-ECCHHHHHHHHHH----HHHCCCEEEEECCHHHHHHHHHHCCCCCEEEECCCCCCCCHHHHHHHHHHC-CC
T ss_conf 88869999-4878899999999----998699899989999999999718998589876999999899999999861-99
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 980899816871899999997656264318999899999763102
Q gi|254780725|r 106 GTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 106 ~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
.+|+|.++.+.-..-.++.+.+|..+||.||++..++.+.+.+..
T Consensus 754 ~~pIIAlTA~a~~ed~~~~l~aGmd~~L~KPv~~~~L~~~l~~~l 798 (912)
T PRK11466 754 SLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYL 798 (912)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCCCEECCCCCHHHHHHHHHHHH
T ss_conf 997899779878899999997699877549899999999999984
No 115
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.00 E-value=2.5e-08 Score=70.40 Aligned_cols=108 Identities=15% Similarity=0.135 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 98999999988641100202237306998999999861899849999805987677889998885328998089981687
Q gi|254780725|r 37 TDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTN 116 (427)
Q Consensus 37 ~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~ 116 (427)
.+-....+....+. -....+.-..++..++++.+... .|+++|+|+.+++.++++.+.++. ++++||+++...
T Consensus 10 h~l~r~gl~~~l~~--~~~~~vv~~~~~~~~~l~~~~~~-~~dvvllD~~mp~~~g~~~~~~l~----~~~~vivls~~~ 82 (196)
T PRK10360 10 HLIVRSGFAQLLGL--EPDLQVVAEFGSGREALAGLPGR-GVQVCICDISMPDISGLELLSQLP----KGMATIMLSVHD 82 (196)
T ss_pred CHHHHHHHHHHHHC--CCCEEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCCHHHHHHHH----CCCCEEEEEECC
T ss_conf 79999999999812--99959999989999999988744-999999878878862077999984----387489997307
Q ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 18999999976562643189998999997631023
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
|....++++++|+..|+.|...++++.+++..+..
T Consensus 83 ~~~~~~~a~~~Ga~g~l~K~~~~~el~~aI~~v~~ 117 (196)
T PRK10360 83 SPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred CHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHC
T ss_conf 59999999975998899778999999999999986
No 116
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.00 E-value=2.8e-08 Score=70.06 Aligned_cols=129 Identities=14% Similarity=0.197 Sum_probs=95.8
Q ss_pred HHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 0677640187305999838989999999886411002022373-069989999998618998499998059876778899
Q gi|254780725|r 18 NLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSAL 96 (427)
Q Consensus 18 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l 96 (427)
...+.-.+.|...|..--+.+....+++.- |.+-+.+| ...+..+|++.+... .+++|+.|+.||.+|+++..
T Consensus 515 ~~~~~~~~~~~lrILvVEDn~iN~~V~~~~-----L~~lG~~v~~A~nG~eALe~~~~~-~fDLILMDiqMP~MDG~Eat 588 (779)
T PRK11091 515 AFDEDDMPLPALNILLVEDIELNVIVARSL-----LEKLGNSVDVAMTGKDALEMFKPG-EYDLVLLDIQLPDMTGLDVA 588 (779)
T ss_pred CCCCCCCCCCCCEEEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHCCC-CCCEEEEECCCCCCCHHHHH
T ss_conf 556666688888189986889999999999-----997599999989999999985069-99989982899999789999
Q ss_pred HHHHHHCCCC--CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC
Q ss_conf 9888532899--80899816871899999997656264318999899999763102332
Q gi|254780725|r 97 EPLAEVCDSG--TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ 153 (427)
Q Consensus 97 ~~la~~~~p~--~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~ 153 (427)
.++++..... +|+|+++...- .--.+.+.+|.+|||.||++..+|.+.+.+.+...
T Consensus 589 r~IR~~~~~~~~~PIIALTAna~-~d~~~~l~aGMdd~L~KPi~~~~L~~~l~~~~~~~ 646 (779)
T PRK11091 589 RELRERYGREDLPPLVALTANVL-KDKQEYLDAGMDDVLSKPLSVPALTAMIKKFWDTQ 646 (779)
T ss_pred HHHHHCCCCCCCCCEEEEECCCC-HHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHCCC
T ss_conf 99984257689992798818741-76999997699847518898999999999984645
No 117
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=98.99 E-value=3.8e-08 Score=69.27 Aligned_cols=21 Identities=5% Similarity=0.022 Sum_probs=9.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHH
Q ss_conf 543578776889999999999
Q gi|254780725|r 300 VVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 300 vviV~~p~~~slr~a~~ll~~ 320 (427)
.++|++=+.....-.+.+++.
T Consensus 826 rILVVEDNpINq~VL~~~L~~ 846 (947)
T PRK10841 826 MILVVDDHPINRRLLADQLGS 846 (947)
T ss_pred EEEEECCCHHHHHHHHHHHHH
T ss_conf 899990789999999999997
No 118
>KOG2825 consensus
Probab=98.94 E-value=8.2e-09 Score=73.36 Aligned_cols=173 Identities=20% Similarity=0.297 Sum_probs=95.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC----CCC--CCHHHHHCCCCCHHHH---
Q ss_conf 5379997469887756899999999996269949999787989860334389----987--8988863184561243---
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK----DPI--NSISDAIYPVGRIDKA--- 231 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~----~~~--~~l~d~l~~~~rlD~~--- 231 (427)
...+-|+|+||||||||.++.||..+|.. +.+|++|--|+..+ +.-.|++ .|. .|... +...+ +|+.
T Consensus 18 slKwifVGGKGGVGKTTcs~sLAvqla~~-r~~vLiISTDPAHN-lSDAF~qkftk~pt~V~Gf~n-LfAME-IDp~~e~ 93 (323)
T KOG2825 18 SLKWIFVGGKGGVGKTTCSCSLAVQLAKV-RESVLIISTDPAHN-LSDAFSQKFTKTPTKVEGFEN-LFAME-IDPNVEM 93 (323)
T ss_pred EEEEEEECCCCCCCCCCHHHHHHHHHHCC-CCCEEEEECCCCCC-HHHHHHHHHCCCCCCCCCHHH-HEEEE-CCCCHHH
T ss_conf 03699976767767653126899998616-88647861685311-678888775179830357223-10232-2872444
Q ss_pred ------HHHHHHHCCCCCEEEEEC--CCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCC---------------
Q ss_conf ------376532024898068724--87612032079999999899985-128889973888889---------------
Q gi|254780725|r 232 ------FVSRLPVFYAENLSILTA--PAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWN--------------- 287 (427)
Q Consensus 232 ------~l~~~l~~~~~gL~lL~a--~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~--------------- 287 (427)
+....-....+|..++.- ..-+.-.+..+ +..++...+ -+|+.||.|+.|.-.
T Consensus 94 ~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideams---fae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~l 170 (323)
T KOG2825 94 GDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMS---FAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGL 170 (323)
T ss_pred HHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCHHHHHH---HHHHHHHHHCCCCCEEEECCCCCCCEEHHHCCCHHHHHHH
T ss_conf 1567875300212466523279998731888057775---8999988630664069951588764102521526899999
Q ss_pred -----------HHH------------------------HHHHH---------HCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf -----------899------------------------99986---------2012543578776889999999999998
Q gi|254780725|r 288 -----------SWT------------------------QEVLT---------LSDKVVITTSLDLAGLRNSKNLIDVLKK 323 (427)
Q Consensus 288 -----------~~~------------------------~~~L~---------~AD~vviV~~p~~~slr~a~~ll~~l~~ 323 (427)
+.. +..+. .....+.|+-++..|+..+.|++..|.+
T Consensus 171 gKl~~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k 250 (323)
T KOG2825 171 GKLLSLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAK 250 (323)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 99988998878899987635254557777899999999999999999707998725999877888868889999999986
Q ss_pred CCCCCCCCEEEEECCCCCC
Q ss_conf 1987675389995658987
Q gi|254780725|r 324 LRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 324 ~~~~~~~~~iVlNr~~~~~ 342 (427)
.+.... .+|+||.-.+.
T Consensus 251 ~~idth--nIIVNQLL~~~ 267 (323)
T KOG2825 251 QGIDTH--NIIVNQLLFPD 267 (323)
T ss_pred CCCCCC--CEEEEECCCCC
T ss_conf 488611--20133023799
No 119
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=98.92 E-value=9.2e-08 Score=66.89 Aligned_cols=115 Identities=13% Similarity=0.131 Sum_probs=76.0
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 30599983898999999988641100202237-30699899999986189984999980598767788999888532899
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~ 106 (427)
+.+|..--+.+....+++.- |.+-+.+ ....+..+|++.+... .+|+|+.|+.||.+|+++...++++. .+.
T Consensus 958 ~l~ILvVeDn~~Nr~ll~~~-----L~~lG~~v~~a~nG~eAl~~~~~~-~fDlILmDi~MP~MDG~e~tr~IR~~-~~~ 1030 (1197)
T PRK09959 958 KLSILIADDHPTNRLLLKRQ-----LNLLGYDVDEATDGVQALHKVSMQ-HYDLLITDVNMPNMDGFELTRKLREQ-NSS 1030 (1197)
T ss_pred CCEEEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEECCCCCCCCHHHHHHHHHCC-CCC
T ss_conf 98799979989999999999-----998399999989999999997669-99999987978999899999999646-986
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 8089981687189999999765626431899989999976310
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
+|+|.++......-..+++.+|..|||.||++.++|...+.+.
T Consensus 1031 ~PIialTA~a~~~~~~~cl~aGMdd~L~KPi~l~~L~~~L~~~ 1073 (1197)
T PRK09959 1031 LPIWGLTANAQANEREKGLNCGMNLCLFKPLTLDVLKTHLSQL 1073 (1197)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
T ss_conf 9489997999999999999769983451889899999999853
No 120
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=98.88 E-value=9.8e-08 Score=66.72 Aligned_cols=121 Identities=11% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-CC
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289-98
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS-GT 107 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p-~~ 107 (427)
|.|.---++-|-.+.++.=..- -..-.+--.+-+..+|++..+++. ||+||+|+=||=.||+..||+|++.... ..
T Consensus 3 Iri~i~DDNkEFc~lL~eY~~~--Q~D~EVvG~A~nG~~a~~~I~~q~-PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P 79 (270)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAA--QEDMEVVGVAHNGVDALELIKEQK-PDVVVLDIIMPHLDGIGVLEKLNEIELKARP 79 (270)
T ss_pred EEEEEEECCHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 2899982888999999999852--898389974147689999996089-9899951504300057999998898874489
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 089981687189999999765626431899989999976310233
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
+||.++...=-..-+++|..||+-|++||++.+-|...++.++..
T Consensus 80 ~vi~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 588852237558999999728981566504178899999986246
No 121
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.87 E-value=1.5e-07 Score=65.66 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=125.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
-|.+.|...|+||||++..|..+|.+ +|.+|--. - ..|+-+|+.+...+.-+.+-
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~Vqpf-------K-----------------vGPDYIDP~~H~~atG~~sr 56 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPF-------K-----------------VGPDYIDPGYHTAATGRPSR 56 (451)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHH-CCCCCCCC-------C-----------------CCCCCCCCHHHHHHHCCCCC
T ss_conf 35995488888589999999999986-68721665-------5-----------------68786381356676388567
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCC--------CC-CHHHHHHHHHCC-CCCCCCCCCHHHHH
Q ss_conf 806872487612032079999999899985128889973888--------88-989999986201-25435787768899
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPH--------VW-NSWTQEVLTLSD-KVVITTSLDLAGLR 312 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~--------~~-~~~~~~~L~~AD-~vviV~~p~~~slr 312 (427)
+| +.+.+.++.+..++....+.+|+.||.-=- .. ...+..+...-+ -|++|++..-.|-
T Consensus 57 NL----------D~~mm~~~~v~~~f~~~~~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l~~PVvLVid~~~~s~- 125 (451)
T COG1797 57 NL----------DSWMMGEEGVRALFARAAADADIAVIEGVMGLFDGRGSATDTGSTADLAKLLGAPVVLVVDASGLSR- 125 (451)
T ss_pred CC----------CHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEECCCHHH-
T ss_conf 77----------6544699899999998627898799961230236887776777799999985999899995752257-
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCC-CEEEECCCCHHHH
Q ss_conf 999999999981987675389995658987520059999998489537990687999999884796-1898889998999
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGK-MIHEVDPKSAIAN 391 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~-pi~e~~p~s~~a~ 391 (427)
.+..++.-++...+...--.+|+||+++.+..++-.+.+++..+.++.+.||.+..+--..--.|- |..| ...+..
T Consensus 126 S~AAiv~G~~~fdp~v~iaGVIlNrVgserH~~llr~Ale~~~gv~vlG~lpr~~~l~lp~RHLGLV~a~E---~~~~~~ 202 (451)
T COG1797 126 SVAAIVKGFKHFDPDVNIAGVILNRVGSERHYELLRDALEEYTGVPVLGYLPRDDDLELPSRHLGLVPASE---RLELEA 202 (451)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCCHH---HHHHHH
T ss_conf 89999988986199882578997247778899999987553279857987427855678541326534303---444899
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999985
Q gi|254780725|r 392 LLVDFSRVLM 401 (427)
Q Consensus 392 ~~~~La~~i~ 401 (427)
-+..++..+.
T Consensus 203 ~~~~~a~~v~ 212 (451)
T COG1797 203 KLEALAEVVE 212 (451)
T ss_pred HHHHHHHHHH
T ss_conf 9999999998
No 122
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=98.84 E-value=9.3e-08 Score=66.88 Aligned_cols=112 Identities=7% Similarity=0.138 Sum_probs=84.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 38989999999886411002022373069989999998618998499998059876778899988853289980899816
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGD 114 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~ 114 (427)
..++.....-...-.+-.+ .+.+...+...+.+.+. .|++|++|+.++..++++...++-..-.|.++||+++.
T Consensus 16 ~~dp~l~~~~~a~~l~e~l---~v~~~l~~~~~al~~~~---~pdViLmDi~mp~~~gi~~~~e~i~~~~p~~kVliLTt 89 (216)
T PRK10100 16 ITKPSLQATALLQHLKQSL---AITGKLHNIQRSLDDIS---SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKILLLNT 89 (216)
T ss_pred ECCCHHHHHHHHHHHHHHH---HHHHEECCHHHHHHHCC---CCCEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEEC
T ss_conf 5584299999999889876---47630247766776447---99989984887883089999999972599977999968
Q ss_pred CCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 87189999999765626431899989999976310233
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
.+|......++++|++.|+.|-.++++++++|+.+...
T Consensus 90 ~dd~e~v~~al~aGa~GyllK~~~~~~Li~aIr~v~~G 127 (216)
T PRK10100 90 PEDYPYREIENWPHINGVFYAMEDQERVVNGLQGVLRG 127 (216)
T ss_pred CCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHCC
T ss_conf 87489999997658766766899999999999999879
No 123
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=98.81 E-value=6.7e-07 Score=61.58 Aligned_cols=192 Identities=10% Similarity=0.070 Sum_probs=119.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
.|-+-|.|..-+||||.+++.|..++.+ .|.+|...-- .+.|.... ..++. .-|...+.......
T Consensus 2 mk~~FITGTDTdVGKT~vsaaL~~~l~~-~G~~v~~~KP-VasG~~~~------~~g~~-------~~Da~~l~~~~~~~ 66 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALAS-QGKSVAGYKP-VAKGSKET------PEGLR-------NKDALVLQSVSTIE 66 (231)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEE-EECCCCCC------CCCCC-------HHHHHHHHHHHCCC
T ss_conf 9647998789995399999999999997-8994888856-88399668------99872-------47899999873789
Q ss_pred CC-----CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH------HHHHHHHHCC-CCCCCCCCCH
Q ss_conf 89-----8068724876120320799999998999851288899738888898------9999986201-2543578776
Q gi|254780725|r 241 AE-----NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS------WTQEVLTLSD-KVVITTSLDL 308 (427)
Q Consensus 241 ~~-----gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~------~~~~~L~~AD-~vviV~~p~~ 308 (427)
.+ -+.+-+..........+....+..-+..+.+.||++||.-..+|-. ........-+ -+++|+...+
T Consensus 67 ~~~~~vnP~~~~~~~aa~~~~~~id~~~i~~~~~~l~~~~d~vlVEGAGG~~vPl~~~~~~~Dl~~~l~lPVILV~~~~L 146 (231)
T PRK12374 67 LPYEAVNPIALSEEESSVAHSCPINYTLISNGLANLTDKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQE 146 (231)
T ss_pred CCHHHCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCEEECCCCCCHHHHHHHHCCCCEEEEECCCC
T ss_conf 99887197668866577445485789999999999885579799977986213047651499999983999999988986
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 88999999999999819876753899956589875-20059999998489537990687999
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPFDGAV 369 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~D~~~ 369 (427)
.++-.+--.++.+++.+. .-..+|+|++++... .+-..+.+++.++.++.+.|||-++.
T Consensus 147 G~INHtLLT~eal~~~gl--~l~G~I~N~~~p~~~~~~e~i~~L~~~~~~P~LG~iP~l~~~ 206 (231)
T PRK12374 147 GCINHALLTAQAIANDGL--PLIGWVANRINPGLAHYAEIIDVLGKKLPAPLIGELPYLPRA 206 (231)
T ss_pred CHHHHHHHHHHHHHHCCC--CEEEEEEEEECCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 848899999999997899--579999983679704678899999985599978868999998
No 124
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=98.77 E-value=1.2e-07 Score=66.17 Aligned_cols=187 Identities=13% Similarity=0.108 Sum_probs=113.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
+|-|.|..-|||||++++.|+..|.+ .|.+|...-- .+.|.-. +. ..-|..++.+......+
T Consensus 1 ~ifI~GT~T~vGKT~vt~~L~~~l~~-~G~~v~~~KP-v~tG~~~---~~-------------~~~Da~~~~~~~~~~~~ 62 (223)
T PRK00090 1 VLFVTGTDTGVGKTVVTAALAQALRE-QGYRVAGYKP-VQSGCDG---GL-------------RNGDALALQRLSGLPLD 62 (223)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECE-EEECCCC---CC-------------CCHHHHHHHHHHCCCCC
T ss_conf 98998689997699999999999997-8994899751-2048988---99-------------72799999998089998
Q ss_pred ----CEEEEECCCCCC-----CHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-CH-----HHHHHHHHCC-CCCCCCCC
Q ss_conf ----806872487612-----03207999999989998512888997388888-98-----9999986201-25435787
Q gi|254780725|r 243 ----NLSILTAPAMLS-----RTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-NS-----WTQEVLTLSD-KVVITTSL 306 (427)
Q Consensus 243 ----gL~lL~a~~~~~-----~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-~~-----~~~~~L~~AD-~vviV~~p 306 (427)
+...+..|..+. ....+..+.+...++.+++.||++||.-..++ .+ .........+ -+++|+..
T Consensus 63 ~~~~~p~~~~~p~sP~~aa~~~g~~i~~~~i~~~~~~l~~~~d~vlvEGaGGl~~Pl~~~~~~~Dla~~l~~pvILV~~~ 142 (223)
T PRK00090 63 YELVNPYRFEEPLSPHLAARLEGVTIDLEKISAALRELAQQADLVLVEGAGGLLVPLTDDLTLADLAAQLQLPVILVVGV 142 (223)
T ss_pred HHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCHHHHHHHHCCCEEEEECC
T ss_conf 67605402588989899999909846899999999999831898999468865567567878899999968898999769
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 7688999999999999819876753899956589875-20059999998489537990687999
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPFDGAV 369 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~D~~~ 369 (427)
.+.++-.+.-.++.+++.+. +-..+|+|++..... .....+.+++..|.++.+.|||-++.
T Consensus 143 ~lG~inhtllt~eal~~~gl--~v~GvI~N~~~~~~~~~~~~~~~l~~~~gvPvLG~iP~~~~~ 204 (223)
T PRK00090 143 KLGCINHTLLTLEAIRARGL--PLAGWVANGVPPEGLRHAENLATLAELLPAPLLGRLPYLAEL 204 (223)
T ss_pred CCCHHHHHHHHHHHHHHCCC--CEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCC
T ss_conf 88809999998999996899--489999968588366777689999985499889975899998
No 125
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=98.75 E-value=2.3e-07 Score=64.50 Aligned_cols=115 Identities=17% Similarity=0.292 Sum_probs=91.6
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 30599983898999999988641100202237306998999999861899849999805987677889998885328998
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGT 107 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~ 107 (427)
+++|.---+.+.....+.+.. ||...++. ...+.+.|.+....++ |+++++|++++.+++.+.+.+|... .|.|
T Consensus 14 ~~~vl~vDD~~~~~~~~~~lL---~~~~y~v~-~ae~g~~a~kl~~~~~-~dlvllD~~mp~mdg~ev~~~lk~~-~p~t 87 (360)
T COG3437 14 KLTVLLVDDEPDNLEALRQLL---RMIGYRVI-EAENGEEALKLLQEEP-PDLVLLDVRMPEMDGAEVLNKLKAM-SPST 87 (360)
T ss_pred CCEEEEECCCHHHHHHHHHHH---HHCCCCEE-EECCCHHHHHHHCCCC-CCEEEEECCCCCCCHHHHHHHHHHC-CCCC
T ss_conf 014889658666899999999---74264146-4147507788751168-8567764257776599999998724-9765
Q ss_pred E---EEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 0---8998168718999999976562643189998999997631
Q gi|254780725|r 108 K---VIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 108 ~---Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
. |++++...|.....+++..|+.||+.||+++.++...+..
T Consensus 88 ~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~ 131 (360)
T COG3437 88 RRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSS 131 (360)
T ss_pred CCCCEEEEEECCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
T ss_conf 65325998605876999999972477775288988999999999
No 126
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.73 E-value=2.9e-07 Score=63.86 Aligned_cols=143 Identities=17% Similarity=0.086 Sum_probs=88.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
++|=-|.+.|||||||.+|.-||.++.. .+.++..+|.|+-.++.+-+-.++
T Consensus 2 a~IH~vlqgKGGVGKS~va~~LaQY~~~-~~~~~~~iDTDpvN~tf~~ykal~--------------------------- 53 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSMIAATIAQYKAG-KGQKPLCIDTDPVNATFEGYKALN--------------------------- 53 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCCCEEECCCCCCCHHHCCCCC---------------------------
T ss_conf 7599985588863099999999999983-599985560899970534214367---------------------------
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHH--------HHHHHHCCCC---CCCCCCCH
Q ss_conf 89806872487612032079999999899985128889973888889-899--------9998620125---43578776
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWT--------QEVLTLSDKV---VITTSLDL 308 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~--------~~~L~~AD~v---viV~~p~~ 308 (427)
...+.++ ...++....++.+++.+...=+-+|||.+.+.- +.. ..++....+- ..|++..
T Consensus 54 v~~i~I~-------e~~~i~~r~FD~l~E~i~~~~~~~VID~GAstfvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GG- 125 (241)
T PRK13886 54 VRRLNIM-------DGDEINTRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGG- 125 (241)
T ss_pred CEEEEEE-------CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCC-
T ss_conf 5577752-------38865666668999998568998899885176778999998788699999779739999984598-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8899999999999981987675389995658
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVK 339 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~ 339 (427)
.++.++.+.+..+-..=+...++.+++|.+.
T Consensus 126 qa~~DT~~gl~~l~~~~~~~~~~VVWlN~~~ 156 (241)
T PRK13886 126 QALLDTVSGFAQLASQFPAECLFVVWLNPYW 156 (241)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 4277899999999986587787899974887
No 127
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.67 E-value=1.3e-06 Score=59.92 Aligned_cols=179 Identities=8% Similarity=-0.044 Sum_probs=106.3
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|-|.+.|...|+||||++.-|..+|++ +|.+|--.-. +|+-+|+.+...+.-+-.
T Consensus 2 kgilIAa~~SgsGKTtvt~gL~~aL~~-rG~~Vq~FK~------------------------GPDYIDP~~h~~a~G~~~ 56 (432)
T PRK13896 2 DGVVLAGTSSGVGKTVATLAVLQALAD-AGYDVQPAKA------------------------GPDFIDPSHHEAVVDTPS 56 (432)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCCCCC------------------------CCCCCCHHHHHHHHCCCC
T ss_conf 628997789999899999999999997-8496376666------------------------847519899999968984
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC------CHHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 980687248761203207999999989998512888997388888------98999998620125435787768899999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW------NSWTQEVLTLSDKVVITTSLDLAGLRNSK 315 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~------~~~~~~~L~~AD~vviV~~p~~~slr~a~ 315 (427)
-+|+. +..+++.+..++ .+...|+.||.---+. +....+-+... -|++|++..-.+-.- .
T Consensus 57 ~NLD~----------~m~~~~~v~~~~--~~~~aDiaviEGvMGLyDG~~~Sta~lA~~l~~-PVvLVvd~~~~~~s~-a 122 (432)
T PRK13896 57 RSLDP----------WLSGEDGMRRTY--WRGTGDVCVVEGMMGLYDGTVASTAAVAEELDL-PVVLVVDAKAGMESV-A 122 (432)
T ss_pred CCCCH----------HHCCHHHHHHHH--HHCCCCEEEEEECCCCCCCCCCCHHHHHHHHCC-CEEEEEECCHHHHHH-H
T ss_conf 46891----------018989999999--727998699961232457887758999998499-989999332018889-9
Q ss_pred HHHHHHHHCCCC----CCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEE
Q ss_conf 999999981987----675389995658987520059999998489537990687999999884796189
Q gi|254780725|r 316 NLIDVLKKLRPA----DKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIH 381 (427)
Q Consensus 316 ~ll~~l~~~~~~----~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~ 381 (427)
.++.-++...+. -.-..+|+|++.+++..+.-.+.+++ +.++.+.||.+....-.+-..|-...
T Consensus 123 A~v~G~~~f~~~~~~d~~iaGVIlN~v~s~rh~~~l~~al~~--~i~vlG~lPr~~~l~lp~RHLGL~~~ 190 (432)
T PRK13896 123 ATALGFQAYADRAGVDIDVAGVLAQRAHGGRHADGIRDALPD--ELTYFGRVPPRSDLEIPDRHLGLHMG 190 (432)
T ss_pred HHHHHHHHHCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCCCCCC
T ss_conf 999999972412476524766884267758899999999870--89489884247778984102598733
No 128
>TIGR00313 cobQ cobyric acid synthase CobQ; InterPro: IPR004459 Cobyric acid synthase (CobQ) catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolysed for each amidation .; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process.
Probab=98.66 E-value=3.3e-08 Score=69.60 Aligned_cols=193 Identities=18% Similarity=0.250 Sum_probs=121.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC-----CCCCCHHHH-------HCCCCCHHHH
Q ss_conf 9997469887756899999999996269949999787989860334389-----987898886-------3184561243
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK-----DPINSISDA-------IYPVGRIDKA 231 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~-----~~~~~l~d~-------l~~~~rlD~~ 231 (427)
|-|.|+..-.|||++++.|...||+ +|.+|. +|-..+.-||- +.+-+++.+ +....++++.
T Consensus 1 iMV~GTsS~AGKs~l~AaLCRiL~r-rGy~VA------PFKsQNMSLNSfvt~~~~EiA~AQ~~QA~AAGieP~~~mNPv 73 (502)
T TIGR00313 1 IMVVGTSSSAGKSLLTAALCRILAR-RGYRVA------PFKSQNMSLNSFVTAEGGEIAIAQALQALAAGIEPSVHMNPV 73 (502)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCCCCC------CCHHHHHHHHHHHCCCCCEEEHHHHHHHHHCCCCCCCCCCCC
T ss_conf 9542011540289999999999852-788127------850110101333113787551376899986387886234871
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHH-------CCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH----------HHHH
Q ss_conf 37653202489806872487612032-------079999999899985128889973888889899----------9998
Q gi|254780725|r 232 FVSRLPVFYAENLSILTAPAMLSRTY-------DFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT----------QEVL 294 (427)
Q Consensus 232 ~l~~~l~~~~~gL~lL~a~~~~~~~~-------~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~----------~~~L 294 (427)
+|+.---- .+.+=++--|..-.... +...+.+..-++.|.+.|||||+--..+..+.. .+-+
T Consensus 74 LLKPkgdf-~SQviv~G~a~g~~~~~~Y~~~~~d~~~~~i~eSle~L~~~Yd~vv~EGAGS~AEINL~~rDLaN~~iA~~ 152 (502)
T TIGR00313 74 LLKPKGDF-TSQVIVHGRAVGDMNAQEYYKNKVDFLLKAIKESLEILAEEYDLVVIEGAGSPAEINLKERDLANMRIAEL 152 (502)
T ss_pred CCCCCCCC-EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 01678884-66789841124667615677799999999999999875202888998268871000533157224789864
Q ss_pred HHCCCCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECCCHHH
Q ss_conf 62012543578776----88999999999999819876753899956589875-20059999998489537990687999
Q gi|254780725|r 295 TLSDKVVITTSLDL----AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPFDGAV 369 (427)
Q Consensus 295 ~~AD~vviV~~p~~----~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~D~~~ 369 (427)
..|| +++|++=|. +|+..|..||+.=.+. .-=.+|+||++-... -+-..+.+|+.-|.++.++||||-.+
T Consensus 153 ~~A~-~iLvADIDRGGVFAsi~GTl~LL~~~~r~----liKG~vINkfRG~~~vL~~GI~~lEelTGiPVLGv~PY~~~l 227 (502)
T TIGR00313 153 ADAD-VILVADIDRGGVFASIYGTLKLLPEEERK----LIKGIVINKFRGNVDVLESGIEKLEELTGIPVLGVLPYDENL 227 (502)
T ss_pred CCCC-EEEEEECCCCCCHHHHHHHHHHCCCCCCC----EECEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 3976-79997507774324337466618834575----003068835468724434456899885484234465012577
No 129
>PRK10416 cell division protein FtsY; Provisional
Probab=98.66 E-value=4.7e-06 Score=56.40 Aligned_cols=179 Identities=15% Similarity=0.146 Sum_probs=107.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
-.||.|+| --|+||||...-||..+.+ .|++|+|+=+|..-..+--.| .... -
T Consensus 295 P~VIl~vG-vNG~GKTTTigKLA~~~~~-~gkkVllaA~DTfRaAAieQL-----------------------~~w~--~ 347 (499)
T PRK10416 295 PFVILMVG-VNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFRAAAVEQL-----------------------QVWG--Q 347 (499)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCHHHHHHH-----------------------HHHH--C
T ss_conf 87999974-7878789899999999997-799537884066756899999-----------------------9984--2
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHH---H------HHHHH-----HCCCCCCCCCC
Q ss_conf 8980687248761203207999999989998512888997388888989---9------99986-----20125435787
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSW---T------QEVLT-----LSDKVVITTSL 306 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~---~------~~~L~-----~AD~vviV~~p 306 (427)
..++.++.....-+.. .-.+..+-..-.+.||+||+|+..+...- . ..++. .-+.+++|.+.
T Consensus 348 r~~v~vi~~~~g~Dpa----~V~~dai~~a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa 423 (499)
T PRK10416 348 RNNIPVIAQHTGADSA----SVIFDAIQAAKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDA 423 (499)
T ss_pred CCCCEEEECCCCCCHH----HHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEC
T ss_conf 4573698368999979----999999999997299989985776432609999999999999972378999748999778
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHHHHHHC
Q ss_conf 7688999999999999819876753899956589875200599999984895379---------906879999998847
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFGMSANS 376 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~~A~~~ 376 (427)
... .|+.+-.+.+.+. ..--++|+.+.+...++-+ .=.+...++.++.+ .-||++.-|..|...
T Consensus 424 ~tG--Qna~~qak~F~e~---~~ltGiIlTKlDGtAKGG~-~lsi~~~~~~PI~fiG~GE~idDL~~F~~~~Fv~aLf~ 496 (499)
T PRK10416 424 STG--QNAVSQAKLFHEA---VGLTGITLTKLDGTAKGGV-IFSVADQFGIPIRYIGVGERIEDLRPFKADDFIEALFA 496 (499)
T ss_pred CCC--HHHHHHHHHHHHC---CCCCEEEEECCCCCCCCHH-HHHHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHHHC
T ss_conf 767--7899999998442---7997599965677885259-99999998839599867988220667798999999844
No 130
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.63 E-value=1.9e-06 Score=58.83 Aligned_cols=119 Identities=14% Similarity=0.227 Sum_probs=92.1
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC-C
Q ss_conf 30599983898999999988641100202237-306998999999861899849999805987677889998885328-9
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCD-S 105 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~-p 105 (427)
...|.+--+.......+++. |.+.+.. ..+.+-..|...+.+. .|++||+|..++..|+++...++...-. .
T Consensus 132 ~~kILvvdD~~~~~~~l~~~-----L~~~g~~v~~a~~~~~Al~~~~e~-~~dlil~d~~mp~~dg~el~~~lr~~~~t~ 205 (435)
T COG3706 132 PKKILVVDDDATQRERLRRI-----LQVEGFRVVEATDGEEALLQLAEL-PPDLVLLDANMPDMDGLELCTRLRQLERTR 205 (435)
T ss_pred CCEEEEECCCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHCC-CCCEEEEECCCCCCCHHHHHHHHHCCCCCC
T ss_conf 75089974807799999999-----875363366515989999997468-985899955787667899999972444445
Q ss_pred CCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 98089981687189999999765626431899989999976310233
Q gi|254780725|r 106 GTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 106 ~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
.++||.++...|....-++++.|+.||+.+|++..++...+.+.+..
T Consensus 206 ~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~ 252 (435)
T COG3706 206 DIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRR 252 (435)
T ss_pred CCCEEEEECCCCHHHHHHHHHCCCCCEEECCCCHHHHHHHHHHHHHH
T ss_conf 66389995266347899999768851673477879999999999985
No 131
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=98.59 E-value=7.1e-07 Score=61.46 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=76.3
Q ss_pred EEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECC
Q ss_conf 2373069989999998618998499998059876778899988853289980899816871-899999997656264318
Q gi|254780725|r 57 NMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTND-VSLYRALISNHVSEYLIE 135 (427)
Q Consensus 57 ~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d-~~l~r~l~r~Gv~dyl~~ 135 (427)
++.-..++.++|+.+.... .|++++.|+++|..++++.+.+|+..+ |+++|||++.+++ ..+...++..|++.|+.|
T Consensus 21 ~vv~e~~~g~EAl~~~~~~-~v~~~LmDi~mP~~dGL~~~~~L~r~~-P~vriLVLTm~d~e~~v~~aL~~aga~Gyl~K 98 (205)
T PRK11475 21 HIFSSQSSFQDAMSRISFS-AVIFSLSAMRSERREGLSCLTELAIKF-PRMRRLVIADDDIEARLIGSLSPSPLDGVLSK 98 (205)
T ss_pred EEEECCCCHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHCCEEEEC
T ss_conf 9950545699998628866-643898538999976699999999978-99718999747687999999998416688856
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 9998999997631023
Q gi|254780725|r 136 PLSVADIINSISAIFT 151 (427)
Q Consensus 136 P~~~~~l~~ai~~~~~ 151 (427)
....+++.+++.....
T Consensus 99 ~~~~~eL~~Ai~~~~~ 114 (205)
T PRK11475 99 ASTLEILQQELFLSLN 114 (205)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 7889999999999870
No 132
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=98.54 E-value=4.8e-06 Score=56.33 Aligned_cols=59 Identities=15% Similarity=0.014 Sum_probs=20.7
Q ss_pred CCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCH-HHHHHHHHCCCCEEEECCCC
Q ss_conf 753899956589875200599999984895379906879-99999884796189888999
Q gi|254780725|r 329 KPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDG-AVFGMSANSGKMIHEVDPKS 387 (427)
Q Consensus 329 ~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~-~~~~~A~~~G~pi~e~~p~s 387 (427)
..+-+|+.-+.++..+.............-+....-|.. ....++...|...+...|-+
T Consensus 744 ~~~DLvltD~~p~~~g~~~~~~l~~~~p~lpVilsg~~~~~~~~~~~~~~~~~fL~KPfs 803 (831)
T PRK13837 744 KRFDLVLVDQPSLGDSQLAIAALHAAAPTLPIILAGSSLKMAAREALATAIAEILPKPIS 803 (831)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHCHHHCCCCEEEECCCC
T ss_conf 985399988999998799999998618997499976881443311022266706509999
No 133
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=98.53 E-value=1.1e-05 Score=54.03 Aligned_cols=117 Identities=15% Similarity=0.255 Sum_probs=87.2
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCH-HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 0599983898999999988641100202237306998-999999861899849999805987677889998885328998
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSI-AEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGT 107 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~-~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~ 107 (427)
..|..-.+++.....++....+.. ..+ ....+. .+|++.+....-|+++++|..++..++++.+.++... .+.+
T Consensus 6 ~~vLivdD~~~~~~~~~~~l~~~g---~~v-~~a~~~~~~al~~~~~~~~~dlii~D~~mp~~~G~~~~~~l~~~-~~~~ 80 (130)
T COG0784 6 LRVLVVDDEPVNRRLLKRLLEDLG---YEV-VEAADGEEEALELLRELPQPDLILLDINMPGMDGIELLRRLRAR-GPNI 80 (130)
T ss_pred CEEEEECCCHHHHHHHHHHHHHCC---CEE-EEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC
T ss_conf 889997899999999999998779---789-99578399999998627899999980688788889999999971-8999
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHH-HHHHHHHCC
Q ss_conf 0899816871899999997656264318999899-999763102
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVAD-IINSISAIF 150 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~-l~~ai~~~~ 150 (427)
+||+++...+.....++++.|+.+|+.||+...+ +...+....
T Consensus 81 pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~ 124 (130)
T COG0784 81 PVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLL 124 (130)
T ss_pred CEEEEECCCCHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHH
T ss_conf 68999867867659999976876897589987999999999998
No 134
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=98.51 E-value=4.6e-06 Score=56.45 Aligned_cols=149 Identities=17% Similarity=0.199 Sum_probs=98.6
Q ss_pred CHHHHHHHHHHHHHHHHHHCEEEEECCC-HHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECC
Q ss_conf 9899999998864110020223730699-899999986189984999980598767788999888532899808998168
Q gi|254780725|r 37 TDTLYSVVERSKIDPRMSQVNMRITRGS-IAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDT 115 (427)
Q Consensus 37 ~~~~~~~~~~~~~drr~~~~~~~v~~g~-~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~ 115 (427)
+......+-.- ++++|..+..-+ ..+|.+.+. +-.|+++++|+.++..++++..++..+.. +.+++|.|+.+
T Consensus 9 d~a~~~~l~~i-----Ls~~~~~~~~~~~~~eal~~Le-~~kpDLifldI~mp~~ngiefaeQvr~i~-~~v~iifIssh 81 (361)
T COG3947 9 DAAIVKLLSVI-----LSRAGHEVRSCSHPVEALDLLE-VFKPDLIFLDIVMPYMNGIEFAEQVRDIE-SAVPIIFISSH 81 (361)
T ss_pred HHHHHHHHHHH-----HHHCCCHHHCCCCHHHHHHHHH-HCCCCEEEEEEECCCCCHHHHHHHHHHHH-CCCCEEEEECC
T ss_conf 38999999999-----9861102100688788999998-43887799985237860878999998753-14868999630
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCC-CCCCCEEEEEEECC-----CCCC---HHHHHHHHHHHH
Q ss_conf 71899999997656264318999899999763102332223-45675379997469-----8877---568999999999
Q gi|254780725|r 116 NDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEG-KGSSGCSISFIGSR-----GGVG---SSTIAHNCAFSI 186 (427)
Q Consensus 116 ~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~-~~~~grvIav~g~K-----GGvG---kTTiA~nLA~~L 186 (427)
..-..-+.-|. ..|||+||++++.|-+++.+......+. ....+..|..+|.- -|.- .|+=|..|=..|
T Consensus 82 ~eya~dsf~~n--~~dYl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayL 159 (361)
T COG3947 82 AEYADDSFGMN--LDDYLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYL 159 (361)
T ss_pred HHHHHHHCCCC--HHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHCCCEEEEECCCEEEECCCCCEEEEHHHHHHHHHHHH
T ss_conf 56523203556--6754168888889999999874024444100137046750640012347842230136799999999
Q ss_pred HHHCCCCE
Q ss_conf 96269949
Q gi|254780725|r 187 ASVFAMET 194 (427)
Q Consensus 187 A~~~~~~V 194 (427)
-.+.|+.|
T Consensus 160 v~hkgk~v 167 (361)
T COG3947 160 VEHKGKEV 167 (361)
T ss_pred HHHCCCCC
T ss_conf 98248855
No 135
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.46 E-value=1.1e-05 Score=54.12 Aligned_cols=186 Identities=15% Similarity=0.167 Sum_probs=112.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 753799974698877568999999999962699499997879898-6033438998789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG-TANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g-~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
...+|.+.| -+|+||||+.--|...|.+ .|.+|.++=-|+... +-+..|| +.-|+.. ..
T Consensus 50 ~a~viGITG-~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLG------------DRiRM~~-----~~- 109 (323)
T COG1703 50 NAHVIGITG-VPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILG------------DRIRMQR-----LA- 109 (323)
T ss_pred CCCEEEECC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCC------------CHHHHHH-----HC-
T ss_conf 983787317-9988668899999999997-79678999988999987853012------------0766776-----44-
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHH-HHHHH
Q ss_conf 2489806872487612032079999999899985-128889973888889899999862012543578776889-99999
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGL-RNSKN 316 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~sl-r~a~~ 316 (427)
..+|+++=+.|..- ....++... ...+..+. ..||+|||.+- +.+..-..+...+|.+++|+.|....= ...|.
T Consensus 110 -~~~~vFiRs~~srG-~lGGlS~at-~~~i~~ldAaG~DvIIVETV-GvGQsev~I~~~aDt~~~v~~pg~GD~~Q~iK~ 185 (323)
T COG1703 110 -VDPGVFIRSSPSRG-TLGGLSRAT-REAIKLLDAAGYDVIIVETV-GVGQSEVDIANMADTFLVVMIPGAGDDLQGIKA 185 (323)
T ss_pred -CCCCEEEEECCCCC-CCHHHHHHH-HHHHHHHHHCCCCEEEEEEC-CCCCCHHHHHHHCCEEEEEECCCCCCHHHHHHH
T ss_conf -69981784268776-510166889-99999998618988999814-788415577652166899965788827888874
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCE--EEEECCCHHHHHHHHHCCC
Q ss_conf 9999998198767538999565898752005999999848953--7990687999999884796
Q gi|254780725|r 317 LIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITP--SAIIPFDGAVFGMSANSGK 378 (427)
Q Consensus 317 ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~--~~~IP~D~~~~~~A~~~G~ 378 (427)
=+ +...+ .+|+|+++. +..+....++..++.... ...-++.|.++..+...|+
T Consensus 186 Gi-----mEiaD---i~vINKaD~-~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~ 240 (323)
T COG1703 186 GI-----MEIAD---IIVINKADR-KGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGE 240 (323)
T ss_pred HH-----HHHHH---EEEEECCCH-HHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCC
T ss_conf 14-----65403---356725672-658999999999997511454236888864676413577
No 136
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=98.44 E-value=7.9e-06 Score=55.01 Aligned_cols=112 Identities=11% Similarity=0.213 Sum_probs=80.3
Q ss_pred EEECCHHH-HHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEE
Q ss_conf 98389899-99999886411002022373069989999998618998499998059876778899988853289980899
Q gi|254780725|r 33 VFCVTDTL-YSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIV 111 (427)
Q Consensus 33 ~f~~~~~~-~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Viv 111 (427)
+-|+|+.. ...++.-.++ .....+....++..+|++.+... .||++++|+.+++.+|++.+..|.. +..+.+|.
T Consensus 5 ~I~DDe~~~~~~l~~~l~~--~~~i~~~~~~~~~~eal~~~~~~-~~DllfLDI~m~~~~G~ela~~l~~--~~~~~iIF 79 (239)
T PRK11697 5 LIVDDEPLAREELRELLQE--EGDIEIVGECSNAIEALGAIHRL-KPDVVFLDIQMPRISGLELVGMLDP--EHMPYIVF 79 (239)
T ss_pred EEECCCHHHHHHHHHHHHH--CCCEEEEEEECCHHHHHHHHHHC-CCCEEEECCCCCCCCHHHHHHHHCC--CCCCEEEE
T ss_conf 9996999999999999975--87989999989999999999853-9999998399869599999998373--34986999
Q ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 8168718999999976562643189998999997631023
Q gi|254780725|r 112 IGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 112 ig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
++.+.+- ..++.+.++.|||.||++.+++..++.++..
T Consensus 80 vT~~~e~--a~~af~~~a~dYllKP~~~e~l~~~l~r~~~ 117 (239)
T PRK11697 80 VTAFDEY--AIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (239)
T ss_pred EECCHHH--HHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
T ss_conf 9586899--9999730972665389999999999999999
No 137
>TIGR00959 ffh signal recognition particle protein; InterPro: IPR004780 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents various SRP subunits.; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=98.44 E-value=5.3e-05 Score=49.94 Aligned_cols=186 Identities=13% Similarity=0.113 Sum_probs=111.2
Q ss_pred HHHHHHHHHHC---CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHH-HHHHCCCCEEEEECCCCCCCCHHHCCCCC
Q ss_conf 89999976310---233222345675379997469887756899999999-99626994999978798986033438998
Q gi|254780725|r 139 VADIINSISAI---FTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFS-IASVFAMETLLADLDLPYGTANINFDKDP 214 (427)
Q Consensus 139 ~~~l~~ai~~~---~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~-LA~~~~~~VlLvDlDl~~g~~~~~l~~~~ 214 (427)
.++|++-+..- -..-.....+ =-+|-++| ==|.||||++.=||.+ |-+..+++||||=||++-..+-
T Consensus 78 ~eEL~~~LG~~~~E~~~L~~~~~~-P~vilmvG-LQGsGKTTt~gKLA~~ll~kk~~~kvLLva~D~yRPAA~------- 148 (439)
T TIGR00959 78 HEELVAILGGKGRESAELKLAEKR-PTVILMVG-LQGSGKTTTAGKLALYLLKKKEGKKVLLVACDLYRPAAI------- 148 (439)
T ss_pred HHHHHHHCCCCCCCCCCCCCCCCC-CEEEEEEC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEEEHHCCCHHHH-------
T ss_conf 689998516667325675556786-83899731-378857889999999999986389703403210347899-------
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEE-CCCCCC--CHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHH-
Q ss_conf 7898886318456124337653202489806872-487612--032079999999899985-12888997388888989-
Q gi|254780725|r 215 INSISDAIYPVGRIDKAFVSRLPVFYAENLSILT-APAMLS--RTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSW- 289 (427)
Q Consensus 215 ~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~-a~~~~~--~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~- 289 (427)
|+ |.....+ =|+.+++ -+..-. .+- +-.++.++.++ ..||+|||||..+..-.
T Consensus 149 --------------~Q--L~~Lg~Q--~gVpvf~h~~~~~~p~~Pv----~ia~~Al~~Ak~~~~D~vI~DTAGRL~ID~ 206 (439)
T TIGR00959 149 --------------EQ--LKVLGEQ--VGVPVFAHLGKGQSPDDPV----EIARQALEEAKENGFDVVIVDTAGRLQIDE 206 (439)
T ss_pred --------------HH--HHHHHHH--CCCCCCCCCCCCCCCCCHH----HHHHHHHHHHHHCCCCEEEEECCCCHHHHH
T ss_conf --------------99--9997675--2887110047888988778----999999999997489789972675125559
Q ss_pred --H-----HHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE
Q ss_conf --9-----99986201254357877688999999999999819876753899956589875200599999984895379
Q gi|254780725|r 290 --T-----QEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA 361 (427)
Q Consensus 290 --~-----~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~ 361 (427)
. ......-|++++|++ -.+=.++-++-+.+.+ + -.--++|+.+.+...|+-... .+...+|.|+-+
T Consensus 207 ~LM~EL~~iK~~~nP~EiLlVvD--aM~GQdAvn~A~~F~e-~--lgltG~vltK~DGDaRGGAAL-S~~~~tg~PIKF 279 (439)
T TIGR00959 207 ELMEELAEIKEILNPDEILLVVD--AMTGQDAVNTAKTFNE-R--LGLTGVVLTKLDGDARGGAAL-SVRSVTGKPIKF 279 (439)
T ss_pred HHHHHHHHHHHHHCCCEEEECCH--HCCHHHHHHHHHHHCC-C--CCCCEEEEECCCCCCHHHHHH-HHHHHHCCCEEE
T ss_conf 99999999988868870541220--1021699999986366-0--013547885475660578999-999996896188
No 138
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.42 E-value=1.7e-05 Score=52.89 Aligned_cols=242 Identities=12% Similarity=0.068 Sum_probs=127.4
Q ss_pred HHHHHHHHHCCCCEEEC--------CCCCHHH----HHHHHHHCCCC--CCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 89999999765626431--------8999899----99976310233--2223456753799974698877568999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLI--------EPLSVAD----IINSISAIFTP--QEEGKGSSGCSISFIGSRGGVGSSTIAHNCA 183 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~--------~P~~~~~----l~~ai~~~~~~--~~~~~~~~grvIav~g~KGGvGkTTiA~nLA 183 (427)
..+|++++++|+++-+. .-.+... +...+.+...- ........|+|++++| -=||||||+.+-||
T Consensus 119 ~~l~~~L~~~g~~~~la~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ggV~alVG-PTGVGKTTTiAKLA 197 (404)
T PRK06995 119 GALFRHLLAAGFSAQLVRMLLENLPAGDDAQAAMDWARSVLASNLPVLGSEDALMERGGVFALVG-PTGVGKTTTTAKLA 197 (404)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCEEEEEC-CCCCCHHHHHHHHH
T ss_conf 99999999879999999999984703389789999999999974666666531011475589866-88876375899999
Q ss_pred HHHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHH
Q ss_conf 99996269-94999978798986033438998789888631845612433765320248980687248761203207999
Q gi|254780725|r 184 FSIASVFA-METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEK 262 (427)
Q Consensus 184 ~~LA~~~~-~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~ 262 (427)
....-+.| .+|.||-+|..--.+.-.| +.+..- -|+.+-. -.+++
T Consensus 198 Ar~~l~~g~~kVaLIT~DTYRIgAvEQL-----------------------ktYa~I--lgvPv~v---------v~~~~ 243 (404)
T PRK06995 198 ARCVMRHGASKVALLTTDSYRIGGHEQL-----------------------RIYGKI--LGVPVHA---------VKDAA 243 (404)
T ss_pred HHHHHHHCCCCEEEEECCCCCHHHHHHH-----------------------HHHHHH--CCCEEEE---------ECCHH
T ss_conf 9999983898379997687547899999-----------------------999987--5955999---------59999
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCC--CHHH---HHHHHHC---CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEE
Q ss_conf 999989998512888997388888--9899---9998620---1254357877688999999999999819876753899
Q gi|254780725|r 263 MIVPVLDILEQIFPLVILDVPHVW--NSWT---QEVLTLS---DKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLV 334 (427)
Q Consensus 263 ~l~~ll~~l~~~yd~VIiD~p~~~--~~~~---~~~L~~A---D~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iV 334 (427)
.+...++.++ .+|+|+||++... +... ...|..+ ..+++|...+. .-++.+.+++.++..++ -.+|
T Consensus 244 eL~~aL~~l~-~~dlILIDTaGrs~rD~~~~e~l~~l~~~~~~~~~~LVLsat~-~~~dl~~i~~~f~~~~~----~~~I 317 (404)
T PRK06995 244 DLRLALAELR-NKHIVLIDTVGMSQRDRMVSEQIAMLHGAGAPVQRLLLLNATS-HGDTLNEVVQAYRGPGL----AGCI 317 (404)
T ss_pred HHHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCC-CHHHHHHHHHHHCCCCC----CEEE
T ss_conf 9999999708-9999998099989768889999999973578852899977989-99999999998446999----8399
Q ss_pred EECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCH------HHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHCC
Q ss_conf 9565898752005999999848953799-----06879------999998847961898889998999999999998522
Q gi|254780725|r 335 LNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDG------AVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGR 403 (427)
Q Consensus 335 lNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~------~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~gr 403 (427)
+.+.+.....- ..=.+.-..+.++..+ +|.|. .++..|..... +.+|-+.-..++.-+.....++
T Consensus 318 ~TKLDEt~~~G-~iln~~~~~~lPlsy~T~GQ~VPeDi~~A~~~~Lv~ra~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 393 (404)
T PRK06995 318 LTKLDEAASLG-GALDTVIRHKLPLHYVSNGQRVPEDLHVANAKFLLHRAFCAPR---EGSPFVPQDDEMPLLLAALAAR 393 (404)
T ss_pred EECCCCCCCHH-HHHHHHHHHCCCEEEECCCCCCCCCHHCCCHHHHHHHHHHCCC---CCCCCCCCCCHHHHHHHHHHCC
T ss_conf 83040679723-9999999978985998189958421210898999999862645---5899998800799999876414
Q ss_pred C
Q ss_conf 1
Q gi|254780725|r 404 V 404 (427)
Q Consensus 404 ~ 404 (427)
.
T Consensus 394 ~ 394 (404)
T PRK06995 394 S 394 (404)
T ss_pred C
T ss_conf 6
No 139
>PRK00784 cobyric acid synthase; Provisional
Probab=98.40 E-value=7.4e-06 Score=55.20 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=111.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCC-CCCCHHHHHCC-------CCCHHHH
Q ss_conf 753799974698877568999999999962699499997879898603343899-87898886318-------4561243
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKD-PINSISDAIYP-------VGRIDKA 231 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~-~~~~l~d~l~~-------~~rlD~~ 231 (427)
.+|.|-|.|+..++|||++++.|...+++ .|.+|.= +-.|.=..+.+...+ -+-+.+.+++. .-+.++.
T Consensus 2 ~~k~lMv~GT~S~vGKS~l~aaLCRi~~~-~G~~VaP--FKaQNMslNs~vt~dG~EigrAQ~~QA~Aag~~p~v~MNPI 78 (492)
T PRK00784 2 MAKALMVQGTTSDAGKSTLVAGLCRILAR-RGLRVAP--FKAQNMSLNSAVTADGGEIGRAQALQAEAAGVEPSVDMNPV 78 (492)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCCCC--CCHHHCCCCCEECCCCCEEHHHHHHHHHHCCCCCCCCCCCE
T ss_conf 86305888678887799999999999995-8985578--57022466517889998336999999998699997676887
Q ss_pred HHHHHHHCCCCCEEEEECCCCCC-----CHHCC---CHHHHHHHHHHHHHCCCEEEECCCCCCCHHH--------HHHHH
Q ss_conf 37653202489806872487612-----03207---9999999899985128889973888889899--------99986
Q gi|254780725|r 232 FVSRLPVFYAENLSILTAPAMLS-----RTYDF---DEKMIVPVLDILEQIFPLVILDVPHVWNSWT--------QEVLT 295 (427)
Q Consensus 232 ~l~~~l~~~~~gL~lL~a~~~~~-----~~~~~---~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~--------~~~L~ 295 (427)
+|+..-. .+-.++--+.... ..++. -...+...++.|+..||+||+.-..+..+.. ..+..
T Consensus 79 LLKP~gd---~~SQVIv~Gk~~g~~~a~~Y~~~~~~~~~~v~~a~~~L~~~~d~iV~EGAGSpaEiNL~~~Di~Nm~~A~ 155 (492)
T PRK00784 79 LLKPQSD---TGSQVIVQGKVVGNMDARDYHDYKPRLLEAVLESLDRLAAEYDLVVVEGAGSPAEINLRDRDIANMGFAE 155 (492)
T ss_pred EECCCCC---CCCEEEECCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHH
T ss_conf 7631899---8867999997875313999998699999999999999886588999935898200265220024289998
Q ss_pred HCC-CCCCCCCCC----HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 201-254357877----688999999999999819876753899956589875-200599999984895379906879
Q gi|254780725|r 296 LSD-KVVITTSLD----LAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 296 ~AD-~vviV~~p~----~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~D~ 367 (427)
.++ -|++|.+-| .+++..+..+++.-.+. .-..+|+|++.-... -+-..+.+++..|.++.++|||..
T Consensus 156 ~~~apviLV~DIdRGGvfAsl~GT~~lL~~~eR~----li~G~IiNKFRGD~~ll~pG~~~le~~tg~PvlGviP~~~ 229 (492)
T PRK00784 156 AADAPVILVADIDRGGVFASLVGTLALLSPEERA----RVKGFVINKFRGDISLLEPGLDWLEELTGIPVLGVLPYLD 229 (492)
T ss_pred HCCCCEEEEEECCCCCHHHHHHHHHHHCCHHHHH----HEEEEEEEEECCCHHHHCCHHHHHHHHHCCCCEEEECCCC
T ss_conf 6599889999756764268776388759998871----1589999764587466355999999986898068614656
No 140
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.40 E-value=1.5e-06 Score=59.42 Aligned_cols=131 Identities=19% Similarity=0.221 Sum_probs=79.5
Q ss_pred HHHHHHHHHCCCCEEECCC--------CCHHH----HHHHHHHCCCCC--CCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8999999976562643189--------99899----999763102332--223456753799974698877568999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLIEP--------LSVAD----IINSISAIFTPQ--EEGKGSSGCSISFIGSRGGVGSSTIAHNCA 183 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~P--------~~~~~----l~~ai~~~~~~~--~~~~~~~grvIav~g~KGGvGkTTiA~nLA 183 (427)
-.+|..|++.|+++.+..- .+.++ +...|.+.+.-. .......+++|+|+| --||||||+.+=||
T Consensus 137 ~~l~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~vi~lvG-PTGVGKTTTiAKLA 215 (282)
T TIGR03499 137 AKLYERLEEAGVSEELARELLEKLPERADAESAWRWLREALENMLPVKPEEDEILEQGGVIALVG-PTGVGKTTTLAKLA 215 (282)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHH
T ss_conf 99999999869999999999997460299789999999999964777887655445672799977-88875788999999
Q ss_pred HHHHHHC-CCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHH
Q ss_conf 9999626-994999978798986033438998789888631845612433765320248980687248761203207999
Q gi|254780725|r 184 FSIASVF-AMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEK 262 (427)
Q Consensus 184 ~~LA~~~-~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~ 262 (427)
+.++... +++|.||-+|..--.+.-.| .+.++++ |+.+-. -.++.
T Consensus 216 a~~~l~~~~~~V~lIT~DtyRigA~eQL-----k~ya~il--------------------~vp~~v---------v~~~~ 261 (282)
T TIGR03499 216 ARFVLEHGKKKVALITTDTYRIGAVEQL-----KTYAKIL--------------------GVPVKV---------ARDPK 261 (282)
T ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHH-----HHHHHHH--------------------CCEEEE---------ECCHH
T ss_conf 9999973899679998077767899999-----9999995--------------------974899---------39999
Q ss_pred HHHHHHHHHHHCCCEEEECCCC
Q ss_conf 9999899985128889973888
Q gi|254780725|r 263 MIVPVLDILEQIFPLVILDVPH 284 (427)
Q Consensus 263 ~l~~ll~~l~~~yd~VIiD~p~ 284 (427)
.+...++.++ .+|+|+||++.
T Consensus 262 ~l~~~l~~~~-~~d~IlIDTaG 282 (282)
T TIGR03499 262 ELAKALERLR-DKDLILIDTAG 282 (282)
T ss_pred HHHHHHHHCC-CCCEEEEECCC
T ss_conf 9999998657-98999981979
No 141
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.40 E-value=6e-05 Score=49.58 Aligned_cols=173 Identities=14% Similarity=0.145 Sum_probs=102.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
--+|-++| =-|.||||.+.-||++|.+ .+++|+||-+|.+-..+- |+ |+....+
T Consensus 100 P~vImmvG-LQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~---------------------eQ--L~~La~q- 153 (451)
T COG0541 100 PTVILMVG-LQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAI---------------------EQ--LKQLAEQ- 153 (451)
T ss_pred CEEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHH---------------------HH--HHHHHHH-
T ss_conf 85899981-5679748689999999997-499458985056786899---------------------99--9999986-
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHH--H------HHHHHHCCCCCCCCCCCHHHH
Q ss_conf 89806872487612032079999999899985-12888997388888989--9------999862012543578776889
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSW--T------QEVLTLSDKVVITTSLDLAGL 311 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~--~------~~~L~~AD~vviV~~p~~~sl 311 (427)
-++.+++.... ..+.+ -...-++.++ ..||+||||+....... . .......|++++|++....
T Consensus 154 -~~v~~f~~~~~-~~Pv~----Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G-- 225 (451)
T COG0541 154 -VGVPFFGSGTE-KDPVE----IAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG-- 225 (451)
T ss_pred -CCCCEECCCCC-CCHHH----HHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCCC--
T ss_conf -09853167788-99799----99999999997499889996887330309999999999855398748998764445--
Q ss_pred HHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 99999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 312 RNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 312 r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
.++.+..+.+.+. -.--.+|+.+.+...++-... .+....|.|+-+ .=||+|+-+.
T Consensus 226 QdA~~~A~aF~e~---l~itGvIlTKlDGdaRGGaAL-S~~~~tg~PIkFiGtGEki~dLE~F~P~R~a 290 (451)
T COG0541 226 QDAVNTAKAFNEA---LGITGVILTKLDGDARGGAAL-SARAITGKPIKFIGTGEKIDDLEPFHPDRFA 290 (451)
T ss_pred HHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHH-HHHHHHCCCEEEEECCCCCCCCCCCCHHHHH
T ss_conf 6789999998662---698649997146787622888-5699878985997458873547774958899
No 142
>PRK10867 signal recognition particle protein; Provisional
Probab=98.39 E-value=6.8e-05 Score=49.25 Aligned_cols=173 Identities=10% Similarity=0.094 Sum_probs=99.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
.+|-++| =-|+||||.+.-||.++-...+++|+++-+|..-..+--.| +....+
T Consensus 101 ~VIm~vG-LqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL-----------------------~~la~~-- 154 (453)
T PRK10867 101 AVVLMAG-LQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQL-----------------------ETLAEQ-- 154 (453)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHH-----------------------HHHHHH--
T ss_conf 6999974-68885185899999999973898379855887705899999-----------------------999985--
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHH-HHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 9806872487612032079999999899-985128889973888889899--------9998620125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLD-ILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~-~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr 312 (427)
-++.++..+..-+ +..+ ...-++ .-...||+||+|+........ ..-....|++++|.+.... .
T Consensus 155 ~~v~~~~~~~~~d-p~~i----a~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q 227 (453)
T PRK10867 155 VGVDFFPSDVGQK-PVDI----VNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTG--Q 227 (453)
T ss_pred CCCCEECCCCCCC-HHHH----HHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCC--H
T ss_conf 1980436788998-8999----9999999997799999997876012108889999999876378713797432235--6
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 9999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
++.+..+.+.+.- .--.+|+.+.+...++-... .+....|.|+.+ .-||+|.-|.
T Consensus 228 ~a~~~a~~F~~~~---~~~gvIlTKlDgdarGG~al-S~~~~t~~PI~FiG~GEk~ddle~F~p~r~a 291 (453)
T PRK10867 228 DAANTAKAFNEAL---PLTGVVLTKVDGDARGGAAL-SIRHITGKPIKFLGVGEKTDALEPFHPDRIA 291 (453)
T ss_pred HHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 6899999999855---98707875046787613898-9999978696788669982458876848999
No 143
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.36 E-value=2.7e-05 Score=51.72 Aligned_cols=169 Identities=14% Similarity=0.138 Sum_probs=93.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
..-++|.++| =-|+||||.++-||+.+.. .+++|+++=+|..-..+--.| +.+..
T Consensus 73 ~~~~vI~lvG-~~G~GKTTT~AKLA~~~~~-~~~kV~lia~DtyR~aA~eQL-----------------------k~~a~ 127 (270)
T PRK06731 73 KEVQTIALIG-PTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQL-----------------------QDYVK 127 (270)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCHHHHHHH-----------------------HHHHH
T ss_conf 9981899988-8989889999999999986-799089998388888899999-----------------------99999
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH--CCCEEEECCCCCCC--HHH-HHH---HH--HCCCCCCCCCCCH
Q ss_conf 24898068724876120320799999998999851--28889973888889--899-999---86--2012543578776
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ--IFPLVILDVPHVWN--SWT-QEV---LT--LSDKVVITTSLDL 308 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~--~yd~VIiD~p~~~~--~~~-~~~---L~--~AD~vviV~~p~~ 308 (427)
. -++.+.... .+..+...+..++. .||+|+||+..... ... ..+ +. ..|++++|...+.
T Consensus 128 ~--l~v~~~~~~---------~~~~~~~~~~~~~~~~~~DvilIDTAGR~~~d~~lm~el~~~~~~~~p~~~~Lvldas~ 196 (270)
T PRK06731 128 T--IGFEVIAVR---------DEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 196 (270)
T ss_pred H--HCCCEECCC---------CHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEEECCC
T ss_conf 8--199535458---------87899999999999769999999799987146999999999860638987999986877
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHHH
Q ss_conf 889999999999998198767538999565898752005999999848953799-----0687999
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGAV 369 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~~ 369 (427)
.-.++.+..+.++..+ .-++|+++.+...++-. .=.+....+.|+.+. ||.|-+.
T Consensus 197 -~~~~~~~~~~~f~~~~----i~gvIlTKlD~ta~gG~-als~~~~~~~PI~fig~Ge~VpeDi~~ 256 (270)
T PRK06731 197 -KSKDMIEIITNFKDIH----IDGIVFTKFDETASSGE-LLKIPAVSSAPIVLMTDGQDVKKNIHI 256 (270)
T ss_pred -CHHHHHHHHHHHCCCC----CCEEEEECCCCCCCCCH-HHHHHHHHCCCEEEEECCCCCHHHHHC
T ss_conf -7699999999807799----98899965358997729-999999988597999459997021413
No 144
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.35 E-value=6.6e-05 Score=49.33 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=74.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
+||+++| --||||||..+-||+.+.. .+++|.+|-+|.....+.-.| +.+...
T Consensus 2 ~vi~lvG-ptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL-----------------------~~ya~~-- 54 (196)
T pfam00448 2 NVILLVG-LQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQL-----------------------KQLAER-- 54 (196)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHH-----------------------HHHHHH--
T ss_conf 6999989-9999889999999999997-799289997587768899999-----------------------999986--
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHH-HHCCCEEEECCCCCC--CHHH----HHHHH--HCCCCCCCCCCCHHHHH
Q ss_conf 980687248761203207999999989998-512888997388888--9899----99986--20125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQIFPLVILDVPHVW--NSWT----QEVLT--LSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~--~~~~----~~~L~--~AD~vviV~~p~~~slr 312 (427)
-++.+...... ... ...+...++.+ .+.||+|+||++... +... ..... ..+.+++|..+.... .
T Consensus 55 l~v~~~~~~~~-~d~----~~~~~~~l~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~-~ 128 (196)
T pfam00448 55 LGVPVFGSGTG-SDP----AAVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQ-N 128 (196)
T ss_pred CCCEEEECCCC-CCH----HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C
T ss_conf 39817814877-787----89999999998846899999989998747677899999998522873028998567782-1
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 999999999981987675389995658987
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
.......+.+..++ -.+|+++.+...
T Consensus 129 ~~~~~~~f~~~~~~----~~~I~TKlDet~ 154 (196)
T pfam00448 129 ALNQAKAFNEAVGI----TGVILTKLDGDA 154 (196)
T ss_pred HHHHHHHHHHHCCC----CCEEEEEECCCC
T ss_conf 37899987600477----626888405788
No 145
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=98.32 E-value=4.3e-05 Score=50.45 Aligned_cols=167 Identities=15% Similarity=0.179 Sum_probs=98.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-CHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986-03343899878988863184561243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGT-ANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~-~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
..+.+|.|.| -.|+||||+.-.|+..+.. .|++|.++=.||...- -+..|| +.-|+...
T Consensus 47 g~a~~iGiTG-~pG~GKStli~~l~~~~~~-~g~~v~vlavDPsS~~sgGaiLG------------Dr~Rm~~~------ 106 (325)
T PRK09435 47 GNALRIGITG-VPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILG------------DKTRMERL------ 106 (325)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCHHH------------HHHHHHHH------
T ss_conf 9825997427-9998688999999999996-79858999978999988861010------------38888761------
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHH
Q ss_conf 02489806872487612032079999999899985-12888997388888989999986201254357877688-99999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAG-LRNSK 315 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~s-lr~a~ 315 (427)
...++.++=+.+.. .....++.. ....+..+. ..||+|+|.+= +.+..-..+...+|.++++..|.... +...|
T Consensus 107 -~~~~~~fiRs~~sr-g~lgg~~~~-~~~~~~~~~a~g~d~i~iETv-GvGQ~e~~v~~~~d~~~~~~~p~~GD~~Q~~K 182 (325)
T PRK09435 107 -SRHPNAFIRPSPSS-GTLGGVARK-TRETMLLCEAAGFDVILVETV-GVGQSETAVAGMVDFFLLLQLPGAGDELQGIK 182 (325)
T ss_pred -CCCCCEEEEECCCC-CCCCCCCHH-HHHHHHHHHHCCCCEEEEEEC-CCCHHHHHHHHHCCEEEEEECCCCCCHHHHHH
T ss_conf -47998488406778-886773354-999999999779998999706-77714889987426688883588760889988
Q ss_pred HHHHHHHHCCCCCCCCEEEEECCCCCCC--CHHHHHHHHHHHCC
Q ss_conf 9999999819876753899956589875--20059999998489
Q gi|254780725|r 316 NLIDVLKKLRPADKPPYLVLNQVKTPKK--PEISISDFCAPLGI 357 (427)
Q Consensus 316 ~ll~~l~~~~~~~~~~~iVlNr~~~~~~--~~i~~~~~~~~lg~ 357 (427)
+=+ ....+ .+|+|+++.+.. ......++..++..
T Consensus 183 ~GI-----mEiaD---i~vVNKaDgd~~~~A~~t~~e~~~aL~l 218 (325)
T PRK09435 183 KGI-----MELAD---LIVINKADGDNHTAARRAAAEYRSALRL 218 (325)
T ss_pred HHH-----HHHCC---EEEEECCCCCCHHHHHHHHHHHHHHHHC
T ss_conf 657-----75042---6899776755658999999999999860
No 146
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=98.31 E-value=1.1e-05 Score=54.21 Aligned_cols=165 Identities=15% Similarity=0.197 Sum_probs=99.4
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 753799974698877568999999999962699499997879898-6033438998789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG-TANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g-~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
.+.+|.+.| -+|+||||+.-.|...+.+ .+++|.++=-||... +-+..|| +.-|+...
T Consensus 28 ~a~~iGiTG-~PGaGKStli~~l~~~~~~-~g~~vaVlAvDPSS~~sgGaiLG------------Dr~RM~~~------- 86 (267)
T pfam03308 28 RAHRVGITG-VPGAGKSTLIEALGMELRR-RGHRVAVLAVDPSSPFTGGSILG------------DRTRMQRL------- 86 (267)
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCCC------------CHHHHHHH-------
T ss_conf 955998768-9988799999999999996-89868999978999888863001------------07777650-------
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHH
Q ss_conf 24898068724876120320799999998999851-2888997388888989999986201254357877688-999999
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAG-LRNSKN 316 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~s-lr~a~~ 316 (427)
...++.++=+.+.. .....++.. ....+..+.. .||+|+|.+- +.+..-..+...+|.+++|..|.... +...|+
T Consensus 87 ~~~~~vfiRs~~sr-g~lGGls~~-t~~~i~lleaaGfD~IivETV-GVGQsE~~v~~~aD~~llv~~Pg~GDeiQ~iKa 163 (267)
T pfam03308 87 AVDPGAFIRSSPSR-GALGGLSRA-TREAILLLDAAGFDVIIIETV-GVGQSEVDIANMADTFVLVTIPGGGDDLQGIKA 163 (267)
T ss_pred CCCCCEEEEECCCC-CCCCCCCHH-HHHHHHHHHHCCCCEEEEECC-CCCCCCHHHHHHCCEEEEEECCCCCHHHHHHHH
T ss_conf 58998588645778-888871476-999999999779999999247-777530355541576899955887608889875
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf 99999981987675389995658987520059999998489
Q gi|254780725|r 317 LIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGI 357 (427)
Q Consensus 317 ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~ 357 (427)
=+ ....+ .+|+|+++.+. .+....+++.++..
T Consensus 164 GI-----mEiaD---i~vVNKaD~~~-A~~~~~~l~~~l~l 195 (267)
T pfam03308 164 GL-----MEIAD---IYVVNKADLPG-AERTARELRSALHL 195 (267)
T ss_pred HH-----HHHCC---EEEEECCCHHH-HHHHHHHHHHHHHC
T ss_conf 37-----65354---89996676476-99999999999851
No 147
>PRK13768 GTPase; Provisional
Probab=98.29 E-value=1.9e-05 Score=52.61 Aligned_cols=181 Identities=17% Similarity=0.204 Sum_probs=100.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
.+-|+| --|.||||....+...+.. .++++.+|.|||..-.. .-+|.-.+.|.+. ++..+.++.
T Consensus 4 ~~~ViG-paGSGKsT~~~~l~~~l~~-~~r~~~vvNLDPA~e~~----pY~~~iDIRd~i~---------~~dVM~~~~- 67 (253)
T PRK13768 4 IVFFLG-TAGSGKTTLVGALSDWLEE-QGYDVAIVNLDPAVEYL----PYKPDIDVREYVS---------AREIMRKYG- 67 (253)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCC----CCCCCCCHHHHCC---------HHHHHHHHC-
T ss_conf 899989-9999889999999999997-69975999789866589----9998863786178---------999998819-
Q ss_pred CEEEEECCC-CCCCHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHH
Q ss_conf 806872487-6120320799999998999851-28889973888889899--------9998620125435787768899
Q gi|254780725|r 243 NLSILTAPA-MLSRTYDFDEKMIVPVLDILEQ-IFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLR 312 (427)
Q Consensus 243 gL~lL~a~~-~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr 312 (427)
| +|. .+-...++-...+.++.+.+.. .-||+|+|||.+..-.+ ...|......++|---|..-..
T Consensus 68 -L----GPNGali~~~e~l~~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~~~i~~~L~~~~~~~~v~l~D~~~~~ 142 (253)
T PRK13768 68 -L----GPNGALIASVDLLLTKAEEIKEEIERLDADYVLVDTPGQMELFAFRESGRYLVEKLSSGSKSLSVYLIDAVLAK 142 (253)
T ss_pred -C----CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCCCCEEEEEEECHHHHC
T ss_conf -8----96468999999999989999999851588759982687443222340799999998636862899984505637
Q ss_pred HHHHHHHHH-----HHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHC
Q ss_conf 999999999-----9819876753899956589875200599999984895379906879999998847
Q gi|254780725|r 313 NSKNLIDVL-----KKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANS 376 (427)
Q Consensus 313 ~a~~ll~~l-----~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~ 376 (427)
+...++..+ ...+.. -+...|+|+++.-+. ...+++.+.+. |+..+..+.+.
T Consensus 143 ~~~~fiS~~L~a~s~m~~l~-lP~inVlsK~Dll~~--~~~~~i~~~~~---------D~~~l~~~l~~ 199 (253)
T PRK13768 143 DPSDFVSLLLLALSVQLRLG-LPQIPVLNKIDLLSE--EELERIRKWLE---------DPETLLEELKL 199 (253)
T ss_pred CHHHHHHHHHHHHHHHHHCC-CCEEEEEEHHHCCCH--HHHHHHHHHHC---------CHHHHHHHHHC
T ss_conf 88799999999999999739-997998676862783--77999999862---------99999999850
No 148
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.29 E-value=3.5e-05 Score=51.06 Aligned_cols=184 Identities=15% Similarity=0.200 Sum_probs=97.8
Q ss_pred CHHHHHHHHHCCCCEEECC--------CCCHHH----HHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 1899999997656264318--------999899----9997631023322234567537999746988775689999999
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIE--------PLSVAD----IINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAF 184 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~--------P~~~~~----l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~ 184 (427)
-..+++.|+++|++.-|.. -.+..+ +...|.+-+.-.....-..|-|++++| --||||||..+-||+
T Consensus 292 ra~L~krL~~~GfS~~Lar~L~~~lP~~~~~~~a~~~ll~~La~~Lpv~~~d~~~~gGv~AlvG-pTGvGKTTT~aKlAa 370 (557)
T PRK12727 292 RAQALELMDDYGFDAGLTRDVAMQIPADTELHRGRGLMLGLLSKRLPVAPVDPLERGGVIALVG-PTGAGKTTTIAKLAQ 370 (557)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEEC-CCCCCCHHHHHHHHH
T ss_conf 8999999997669999999999748332788899999999999628777775154076478743-777673117999999
Q ss_pred HHHHHCC-CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHH
Q ss_conf 9996269-949999787989860334389987898886318456124337653202489806872487612032079999
Q gi|254780725|r 185 SIASVFA-METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKM 263 (427)
Q Consensus 185 ~LA~~~~-~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~ 263 (427)
.++.++| .+|.||-.|..-=.+ .|-+..-. +++ |+.+-.. .+...
T Consensus 371 ~~~~~~g~~~valit~DtyRiga------------~eQL~~y~--------~il-----gvpv~~~---------~~~~~ 416 (557)
T PRK12727 371 RFAAQHAPRDVALVTTDTQRVGG------------REQLHSYG--------RQL-----GIAVHEA---------DSAES 416 (557)
T ss_pred HHHHHCCCCEEEEEECCCCCHHH------------HHHHHHHH--------HHH-----CCEEEEE---------CCHHH
T ss_conf 99997399818999726640879------------99999999--------983-----9757982---------89999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCC--CHH-H--HHHHHHCCCC--CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 99989998512888997388888--989-9--9998620125--435787768899999999999981987675389995
Q gi|254780725|r 264 IVPVLDILEQIFPLVILDVPHVW--NSW-T--QEVLTLSDKV--VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 264 l~~ll~~l~~~yd~VIiD~p~~~--~~~-~--~~~L~~AD~v--viV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
+..++..++ .+++|+||+.... +.. . ...|.....+ ++|...+ ...+....+++.++...+ -++|+.
T Consensus 417 l~~~l~~l~-~~~lvliDTaG~~~rd~~~~~~~~~l~~~~~~~~~Lvl~a~-~~~~~l~~~~~~~~~~~~----~~~i~T 490 (557)
T PRK12727 417 LLDLLERLR-DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPAN-AHFSDLDEVVRRFAHAKP----QGVVLT 490 (557)
T ss_pred HHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEEECC-CCHHHHHHHHHHHCCCCC----CEEEEE
T ss_conf 999999836-99989994999884699999999987514776359999688-998999999998537998----748996
Q ss_pred CCCCC
Q ss_conf 65898
Q gi|254780725|r 337 QVKTP 341 (427)
Q Consensus 337 r~~~~ 341 (427)
+.+..
T Consensus 491 KlDE~ 495 (557)
T PRK12727 491 KLDET 495 (557)
T ss_pred ECCCC
T ss_conf 14367
No 149
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=3.4e-05 Score=51.13 Aligned_cols=163 Identities=13% Similarity=0.132 Sum_probs=85.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 56753799974698877568999999999962699499997879898603343899878988863184561243376532
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
-..|+||+++| --|+||||.+.-||+.+.. .|++|+|+=+|..-..+.-.| . .+-++.
T Consensus 203 l~~g~VIaLVG-vnGvGKTTTiAKLA~~l~~-~gkkV~LVAaDTFRaAAiEQL------------k-------~~g~rl- 260 (407)
T PRK12726 203 LSNHRIISLIG-QTGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQF------------Q-------GYADKL- 260 (407)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHHH------------H-------HHHHHH-
T ss_conf 03690899989-9989789999999999997-799179997066778899999------------9-------999997-
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHH--HHHCCCEEEECCCCCCCH--HHHHHHH------HCCCCCCCCCCC
Q ss_conf 024898068724876120320799999998999--851288899738888898--9999986------201254357877
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDI--LEQIFPLVILDVPHVWNS--WTQEVLT------LSDKVVITTSLD 307 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~--l~~~yd~VIiD~p~~~~~--~~~~~L~------~AD~vviV~~p~ 307 (427)
++.+..+. + +..+...+.. ....+|+|+||+...... ....-|. .-+..++|.+..
T Consensus 261 -----gVpV~~~~-d--------pa~l~~av~~~a~~~~~DvVIIDTAGRl~~d~~Lm~EL~ki~~vi~P~~~lLV~dag 326 (407)
T PRK12726 261 -----DVELIVAT-S--------PAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG 326 (407)
T ss_pred -----CCEEEEEC-C--------HHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf -----96499818-8--------899999999998628999899969998813499999999987332896699993675
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 6889999999999998198767538999565898752005999999848953799
Q gi|254780725|r 308 LAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI 362 (427)
Q Consensus 308 ~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~ 362 (427)
.. ...+.+.+..... ..--.+|+.+.+...++-. .=.+...++.++.++
T Consensus 327 ~~----~~~v~qa~~~~~~-v~ItGiILTKLDgtAKGG~-aLSi~~~~~lPI~fI 375 (407)
T PRK12726 327 MK----SADVMTILPKLAE-IPIDGFIITKMDETTRIGD-LYTVMQETNLPVLYM 375 (407)
T ss_pred CC----HHHHHHHHHHHCC-CCCCEEEEEECCCCCCCCH-HHHHHHHHCCCEEEE
T ss_conf 66----9999999987047-9998799970147898539-999999988897999
No 150
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.24 E-value=0.00013 Score=47.56 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=98.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
-||-++| =-|+||||.++-||.++.+ .|++|+|+-+|.....+--. |+....+
T Consensus 98 ~Vim~vG-lqGsGKTTT~aKLA~~~kk-~g~kv~lvaaDt~RpaA~eQ-----------------------L~~la~~-- 150 (433)
T PRK00771 98 QTILLVG-LQGSGKTTTAAKLARYFQK-KGLKVGVICADTWRPGAYEQ-----------------------LKQLCEK-- 150 (433)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCHHHHHH-----------------------HHHHHHH--
T ss_conf 5899973-7889789999999999997-79946785067883689999-----------------------9999986--
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032079999999899985128889973888889899--------99986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr~ 313 (427)
-++.++..+..-+ +..+ ...-+..++ .||+||+|+........ ..-....|++++|.+.... .+
T Consensus 151 ~~v~~~~~~~~~d-p~~i----~~~a~~~~k-~~DvviiDTAGRl~~d~~Lm~El~~i~~~~~P~e~llV~Da~~G--Q~ 222 (433)
T PRK00771 151 INVPFYGDPKEKD-AVKI----VKEGLEKLK-KVDVIIVDTAGRHKLEKDLIEEMKQIKEITKPDEVILVIDATIG--QQ 222 (433)
T ss_pred CCCCCCCCCCCCC-HHHH----HHHHHHHHC-CCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCC--HH
T ss_conf 3887317889999-9999----999999845-69889997765210409999999999877579768998654422--67
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
+.+..+.+.+.- .--.+|+++.+...++-... .+....|.|+.+ .-||+|+-+.
T Consensus 223 a~~~a~~F~~~~---~i~gvIlTKlDgdarGGaaL-Si~~~t~~PI~FiG~GEk~~dle~F~p~r~a 285 (433)
T PRK00771 223 ASEQAKAFKEAV---GIGGIIITKLDGTAKGGGAL-SAVAETGAPIKFIGTGETIDDLEPFDPKRFI 285 (433)
T ss_pred HHHHHHHHHHHC---CCCEEEEECCCCCCCCCHHH-HHHHHHCCCCEEEECCCCCCCCCCCCHHHHH
T ss_conf 899999998753---88737997256788730542-1898878995688617872148866808899
No 151
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.23 E-value=2.2e-05 Score=52.32 Aligned_cols=153 Identities=13% Similarity=0.202 Sum_probs=87.2
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-----
Q ss_conf 189998999997631023322234567537999746988775689999999999626994999978798986033-----
Q gi|254780725|r 134 IEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI----- 208 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~----- 208 (427)
.-|.+..+..+-+..............+ ++.++|.+ .+||||+++-||--+-. +|.+|.++|+|..+.+...
T Consensus 47 e~P~d~~~~~e~i~~~~~~~~~~~~~~~-~vmvvG~v-DSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~pPg~IS 123 (398)
T COG1341 47 EVPEDRSEPLEEIADTWESKSESAGKVG-VVMVVGPV-DSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIGPPGFIS 123 (398)
T ss_pred CCCHHHHHHHHHHHHCCCCCCHHCCCCC-EEEEECCC-CCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCCCCCEEE
T ss_conf 2816763178997632244201206873-89998986-76788999999988764-474189996899976667974677
Q ss_pred -HCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC
Q ss_conf -4389987898886318456124337653202489806872487612032079999999899985128889973888889
Q gi|254780725|r 209 -NFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN 287 (427)
Q Consensus 209 -~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~ 287 (427)
.+-..+..++.+ ....=..+.+..++...+.---..+.++.+.+....|+|+||||....
T Consensus 124 L~~~~s~~~~L~~-------------------l~~~~~~FvG~isP~~~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~ 184 (398)
T COG1341 124 LAFPESPVISLSE-------------------LEPFTLYFVGSISPQGFPGRYIAGVARLVDLAKKEADFILIDTDGWIK 184 (398)
T ss_pred EECCCCCCCCHHH-------------------CCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCEE
T ss_conf 4125677777777-------------------586522798514777776899999999999865168779996998430
Q ss_pred HHH-----HHHHH--HCCCCCCCCCCCH
Q ss_conf 899-----99986--2012543578776
Q gi|254780725|r 288 SWT-----QEVLT--LSDKVVITTSLDL 308 (427)
Q Consensus 288 ~~~-----~~~L~--~AD~vviV~~p~~ 308 (427)
.|. .+.+. ..|.|+.+-+...
T Consensus 185 G~~g~elk~~li~~ikP~~Ii~l~~~~~ 212 (398)
T COG1341 185 GWGGLELKRALIDAIKPDLIIALERANE 212 (398)
T ss_pred CCHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 7427899999886509778999314453
No 152
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.22 E-value=0.00017 Score=46.84 Aligned_cols=160 Identities=15% Similarity=0.152 Sum_probs=85.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
||.++| --||||||..+-||+.+.+ .+++|.+|-+|..-..+.-.| +.+... -
T Consensus 2 Vi~lvG-ptGvGKTTTiaKLA~~~~~-~~~kV~lit~Dt~R~gA~eQL-----------------------~~~a~~--l 54 (173)
T cd03115 2 VILLVG-LQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQL-----------------------RVLGEQ--V 54 (173)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHH-----------------------HHHHHH--C
T ss_conf 999989-9999889999999999997-699289997488757799999-----------------------999997--4
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHH-HHCCCEEEECCCCCC--CHHH----HHHHH--HCCCCCCCCCCCHHHHHH
Q ss_conf 80687248761203207999999989998-512888997388888--9899----99986--201254357877688999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQIFPLVILDVPHVW--NSWT----QEVLT--LSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~--~~~~----~~~L~--~AD~vviV~~p~~~slr~ 313 (427)
++.+....... .. ...+...++.. .+.||+|+||++... +... ...+. ..+.+++|...... .+
T Consensus 55 ~v~~~~~~~~~-~~----~~~~~~~~~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~l~~~~~p~~~~LVl~a~~~--~~ 127 (173)
T cd03115 55 GVPVFEEGEGK-DP----VSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTG--QD 127 (173)
T ss_pred CCEEEECCCCC-CH----HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCEEECCCCCH--HH
T ss_conf 98599227755-87----9999999999875689989997888787999999999999864489721574246550--65
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEE
Q ss_conf 99999999981987675389995658987520059999998489537
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS 360 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~ 360 (427)
+.+....+.+. . ..-++|+.+.+...+.-... .+....+.|+.
T Consensus 128 ~~~~~~~f~~~-~--~~~~~I~TKlDet~~~G~~l-s~~~~~~~Pi~ 170 (173)
T cd03115 128 AVNQAKAFNEA-L--GITGVILTKLDGDARGGAAL-SIRAVTGKPIK 170 (173)
T ss_pred HHHHHHHHHHC-C--CCCEEEEEEECCCCCCCHHH-HHHHHHCCCEE
T ss_conf 89999998742-7--99789997143899757999-99999890908
No 153
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=98.21 E-value=8.8e-05 Score=48.56 Aligned_cols=188 Identities=15% Similarity=0.131 Sum_probs=121.4
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC-
Q ss_conf 3799974698877568999999999962699499997879898603343899878988863184561243376532024-
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY- 240 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~- 240 (427)
+.+-|.|.-=|||||.++..|+.++.. .|.+|...--= |.|.-. ... .-|...+.+.....
T Consensus 3 ~~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~KPV-qsG~~~-------~~~---------~~D~~~l~~~~~~~~ 64 (223)
T COG0132 3 KRFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGYKPV-QTGSEE-------TAE---------NSDALVLQRLSGLDL 64 (223)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEECCE-EECCCC-------CCC---------CCHHHHHHHHCCCCC
T ss_conf 369998279996499999999999996-89705987752-217877-------899---------745999998519986
Q ss_pred ---CCCEEEEECCCCCCCH-----HCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHH-----H-HHHHHCCCCCCCCC
Q ss_conf ---8980687248761203-----2079999999899985128889973888889-899-----9-99862012543578
Q gi|254780725|r 241 ---AENLSILTAPAMLSRT-----YDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWT-----Q-EVLTLSDKVVITTS 305 (427)
Q Consensus 241 ---~~gL~lL~a~~~~~~~-----~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~-----~-~~L~~AD~vviV~~ 305 (427)
.-..+-+..|..+.-. ..+..+.+..-+..+...||+|+|--..+|. +.+ . -+-...--+++|+.
T Consensus 65 ~~~~~~py~f~~P~sPhlAa~~eg~~I~~~~l~~~l~~l~~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~ 144 (223)
T COG0132 65 SYELINPYRFKEPLSPHLAAELEGRTIDLEKLSQGLRQLLKKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVG 144 (223)
T ss_pred CCCCCCCEECCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCEEEECCCCCCHHHHHHHCCCCEEEEEC
T ss_conf 63354335307888847778764893569999878885405467899967873333257865299999980999999966
Q ss_pred CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH-HHHHHHCCCEEEEECCCHHH
Q ss_conf 77688999999999999819876753899956589875200599-99998489537990687999
Q gi|254780725|r 306 LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS-DFCAPLGITPSAIIPFDGAV 369 (427)
Q Consensus 306 p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~-~~~~~lg~~~~~~IP~D~~~ 369 (427)
..+.++-.+---++.+++.+.+ -..+|.|+..+......... .+.+.++.+..+.+|+-++.
T Consensus 145 ~~LGtINHtlLt~eal~~~gl~--l~G~I~n~~~~~~~~~~~~~~~l~~~~~~p~~g~~p~~~~~ 207 (223)
T COG0132 145 IKLGTINHTLLTVEALRARGLP--LAGWVANGINPELDHYAEINATLLKRIGAPLLGIIPYLPES 207 (223)
T ss_pred CCCCHHHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 7757787999999999977998--78999726788555788889999974289743405577663
No 154
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=98.17 E-value=0.00023 Score=46.06 Aligned_cols=220 Identities=16% Similarity=0.177 Sum_probs=131.1
Q ss_pred EECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 81687189999999765626431899989999976310233222345675379997469887756899999999996269
Q gi|254780725|r 112 IGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFA 191 (427)
Q Consensus 112 ig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~ 191 (427)
--...+....++++..=..+++..-.+..........- .......--||.|+| ==|+||||.-.=||..+.. .|
T Consensus 37 ~~~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~kp~Vil~VG-VNG~GKTTTIaKLA~~l~~-~G 110 (284)
T TIGR00064 37 GKKVKDEEKLKEILKEALKEILKEILDKDTLLDLEQIE----ELPEEKKPNVILFVG-VNGVGKTTTIAKLANKLKK-QG 110 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH----HCCCCCCCEEEEEEE-EECCCHHHHHHHHHHHHHH-CC
T ss_conf 35577078999999999999874112321133443344----301478977999984-4088601028899999987-49
Q ss_pred CCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCC-CCCHHCCCHHHHHHHHHH
Q ss_conf 9499997879898603343899878988863184561243376532024898068724876-120320799999998999
Q gi|254780725|r 192 METLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAM-LSRTYDFDEKMIVPVLDI 270 (427)
Q Consensus 192 ~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~-~~~~~~~~~~~l~~ll~~ 270 (427)
++|+|.=.|.- --++ +.+ |+.+.. .-|..|...... -|. ..-.|+.+-..
T Consensus 111 k~V~laAgDTF-RAAA--------------~EQ--------L~~Wa~--R~gv~vi~~~~gn~DP----AaV~fDAi~~A 161 (284)
T TIGR00064 111 KSVLLAAGDTF-RAAA--------------IEQ--------LEVWAK--RLGVDVIKQKEGNADP----AAVIFDAIQAA 161 (284)
T ss_pred CEEEEECCCHH-HHHH--------------HHH--------HHHHHH--HHCCEEEECCCCCCCC----HHHHHHHHHHH
T ss_conf 90899827524-7999--------------999--------999898--8387554078898871----78999989999
Q ss_pred HHHCCCEEEECCCCCCCH---HH------HHHH------HHCCCCCCCCCCCHH--HHHHHHHHHHHHHHCCCCCCCCEE
Q ss_conf 851288899738888898---99------9998------620125435787768--899999999999981987675389
Q gi|254780725|r 271 LEQIFPLVILDVPHVWNS---WT------QEVL------TLSDKVVITTSLDLA--GLRNSKNLIDVLKKLRPADKPPYL 333 (427)
Q Consensus 271 l~~~yd~VIiD~p~~~~~---~~------~~~L------~~AD~vviV~~p~~~--slr~a~~ll~~l~~~~~~~~~~~i 333 (427)
-.++||+|++||..++.. .. ..++ .+-+++++|.+.+.. ++.+++.+-+.+ .-=++
T Consensus 162 k~~niDvvliDTAGRLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt~Gqna~~QA~~F~eav-------~ltGi 234 (284)
T TIGR00064 162 KARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDATTGQNALEQAKVFNEAV-------GLTGI 234 (284)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHC-------CCCEE
T ss_conf 87499789973475454662039999999998732102578755754220222030899999986540-------68858
Q ss_pred EEECCCCCCCCHHHHHHHHHHHCCCEEEE---------ECCCHHHHHHHH
Q ss_conf 99565898752005999999848953799---------068799999988
Q gi|254780725|r 334 VLNQVKTPKKPEISISDFCAPLGITPSAI---------IPFDGAVFGMSA 374 (427)
Q Consensus 334 VlNr~~~~~~~~i~~~~~~~~lg~~~~~~---------IP~D~~~~~~A~ 374 (427)
||.+.+...++-+. =.+...++.|+... .|||+..|.++.
T Consensus 235 iLTKLDg~AKGG~~-l~i~~~l~~Pv~~~G~GE~~dDL~~Fd~~~fv~~L 283 (284)
T TIGR00064 235 ILTKLDGTAKGGII-LAIAYELKLPVKFIGVGEKIDDLAPFDADWFVEAL 283 (284)
T ss_pred EEECCCCCCHHHHH-HHHHHHHCCCEEEEECCCCHHHHCCCCHHHHHHHC
T ss_conf 99634688037899-98899857976998548873320147978998750
No 155
>KOG0519 consensus
Probab=98.15 E-value=4.6e-05 Score=50.32 Aligned_cols=57 Identities=9% Similarity=-0.011 Sum_probs=25.5
Q ss_pred CCCEEEEECCCCCCC-CHHHHHHHHHHHC--CCEEEE-ECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 753899956589875-2005999999848--953799-06879999998847961898889
Q gi|254780725|r 329 KPPYLVLNQVKTPKK-PEISISDFCAPLG--ITPSAI-IPFDGAVFGMSANSGKMIHEVDP 385 (427)
Q Consensus 329 ~~~~iVlNr~~~~~~-~~i~~~~~~~~lg--~~~~~~-IP~D~~~~~~A~~~G~pi~e~~p 385 (427)
....+|+--+.+|.. +....+++.+..+ .++.+. ---++....+....|.--....|
T Consensus 710 ~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP 770 (786)
T KOG0519 710 HSYDVIFMDLQMPEMDGYEATREIRKKERWHLPIVALTADADPSTEEECLEVGMDGYLSKP 770 (786)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCHHHHHHHHHHCCCEEECCC
T ss_conf 8632799975775555499999998751678877997468757889999982876467463
No 156
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=98.11 E-value=0.00039 Score=44.56 Aligned_cols=36 Identities=25% Similarity=0.435 Sum_probs=14.4
Q ss_pred CCCEEEEECCCCCC-CHH-HHH-HHHHHHCCCCCEEEEEEC
Q ss_conf 98499998059876-778-899-988853289980899816
Q gi|254780725|r 77 TPDLIIVQTKVDSR-EVL-SAL-EPLAEVCDSGTKVIVIGD 114 (427)
Q Consensus 77 ~P~~iivd~~~~~~-~~~-~~l-~~la~~~~p~~~Vivig~ 114 (427)
.-|+||||-..... ... ..+ .++|.. =|.+||.+..
T Consensus 98 ~~DvVLVEGs~~~~~~~~~~~lNa~IAkn--LgA~VILV~~ 136 (702)
T PRK05632 98 DCDVVLVEGLVPTRKHPFALSLNAEIAKN--LGAEVILVSS 136 (702)
T ss_pred CCCEEEEECCCCCCCCCCHHHHHHHHHHH--CCCCEEEEEC
T ss_conf 89989994888788986044335999997--6998899963
No 157
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=98.08 E-value=4.7e-05 Score=50.26 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=62.0
Q ss_pred HHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH
Q ss_conf 99999986189984999980598767788999888532899808998168718999999976562643189998999997
Q gi|254780725|r 66 AEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINS 145 (427)
Q Consensus 66 ~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~a 145 (427)
-.+.+..... -||+||+|+.+|..+..+.+-...+ .+..++|++..++|.....+++.+|+.-|+++|+++..+...
T Consensus 40 ~~~~~~~~~~-~pDvVildie~p~rd~~e~~~~~~~--~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~ 116 (194)
T COG3707 40 LEAVEVCERL-QPDVVILDIEMPRRDIIEALLLASE--NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPI 116 (194)
T ss_pred CCCCHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHC--CCCCCEEEEECCCCHHHHHHHHHCCCEEEEECCCCHHHHHHH
T ss_conf 4750677852-9987999667877328999898605--899878999716785899999973874988347654210479
Q ss_pred HHH
Q ss_conf 631
Q gi|254780725|r 146 ISA 148 (427)
Q Consensus 146 i~~ 148 (427)
+.-
T Consensus 117 L~v 119 (194)
T COG3707 117 LDV 119 (194)
T ss_pred HHH
T ss_conf 999
No 158
>KOG0781 consensus
Probab=98.07 E-value=4.2e-05 Score=50.54 Aligned_cols=189 Identities=16% Similarity=0.184 Sum_probs=107.2
Q ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 99999997656264318999899999763102332223456753799974698877568999999999962699499997
Q gi|254780725|r 119 SLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 119 ~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
...+++|+---. -+..|-..-|+.+-|.+.-. .. .-=+|+|+| --||||||--+-+|++|-+ .+.+|+++-
T Consensus 343 ~Tvk~Al~daLv-QILTP~~sVDlLrdI~~ar~---~k---rPYvi~fvG-VNGVGKSTNLAKIayWLlq-NkfrVlIAA 413 (587)
T KOG0781 343 STVKEALRDALV-QILTPQRSVDLLRDIMSARR---RK---RPYVISFVG-VNGVGKSTNLAKIAYWLLQ-NKFRVLIAA 413 (587)
T ss_pred HHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHH---CC---CCEEEEEEE-ECCCCCCCHHHHHHHHHHH-CCCEEEEEE
T ss_conf 999999999999-87388730669999999874---68---975999982-1476651329999999985-783699986
Q ss_pred CCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCE
Q ss_conf 87989860334389987898886318456124337653202489806872487612032079999999899985-12888
Q gi|254780725|r 199 LDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPL 277 (427)
Q Consensus 199 lDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~ 277 (427)
||.--+.+--.| .+..++.-.-+++.+.++..+-.-+ ...-....+...+ +.||+
T Consensus 414 CDTFRsGAvEQL-------------------rtHv~rl~~l~~~~v~lfekGYgkd-----~a~vak~AI~~a~~~gfDv 469 (587)
T KOG0781 414 CDTFRSGAVEQL-------------------RTHVERLSALHGTMVELFEKGYGKD-----AAGVAKEAIQEARNQGFDV 469 (587)
T ss_pred CCCHHHHHHHHH-------------------HHHHHHHHHHCCCHHHHHHHHCCCC-----HHHHHHHHHHHHHHCCCCE
T ss_conf 243124478999-------------------9999999874552048886104778-----2899999999998669878
Q ss_pred EEECCCCCCCH--HHHHHH------HHCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 99738888898--999998------62012543578776--88999999999999819876753899956589
Q gi|254780725|r 278 VILDVPHVWNS--WTQEVL------TLSDKVVITTSLDL--AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 278 VIiD~p~~~~~--~~~~~L------~~AD~vviV~~p~~--~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
|++|+...... ..+..| ..-|.|+.|.+.=+ .|+..++.+-+.+.....+..--.+++.+++.
T Consensus 470 vLiDTAGRmhn~~~LM~~L~kl~~~n~pD~i~~VgEALVG~dsvdq~~~Fn~al~d~~~~r~iDgilltK~DT 542 (587)
T KOG0781 470 VLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVDQLKKFNRALADHSTPRLIDGILLTKFDT 542 (587)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCH
T ss_conf 9983544334780678999999744798659985055527558999999999874489744234378871250
No 159
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.07 E-value=0.00055 Score=43.68 Aligned_cols=208 Identities=15% Similarity=0.171 Sum_probs=105.7
Q ss_pred HHHHHHHHHCCCCEEECC-----------CCCH---H----HHHHHHHHCCCC-CC--CCCC-CCCEEEEEEECCCCCCH
Q ss_conf 899999997656264318-----------9998---9----999976310233-22--2345-67537999746988775
Q gi|254780725|r 118 VSLYRALISNHVSEYLIE-----------PLSV---A----DIINSISAIFTP-QE--EGKG-SSGCSISFIGSRGGVGS 175 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~-----------P~~~---~----~l~~ai~~~~~~-~~--~~~~-~~grvIav~g~KGGvGk 175 (427)
..+|..+++.|+++-+.. |.+. . .+...+...... .+ ...+ ...|+|+|+|. =||||
T Consensus 158 ~~l~~~L~~~~~~~~~~~~i~~~l~~~~~~~d~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~kvi~lVGP-TGVGK 236 (432)
T PRK12724 158 QRLGERLVREGMSQSYVEEMASKLEERLSPVDQGRNHNVTERAVTYLEERVSVDSDLFSGTGKNQRKVVFFVGP-TGSGK 236 (432)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCCEEEEEECC-CCCCH
T ss_conf 99999998756688999999999987538100110678999999999987147740110357777629999899-99888
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCC
Q ss_conf 68999999999962699499997879898603343899878988863184561243376532024898068724876120
Q gi|254780725|r 176 STIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSR 255 (427)
Q Consensus 176 TTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~ 255 (427)
||..+=||..++-..+++|.||=.|..-=.+.-.| .+.++++ |+.+-.
T Consensus 237 TTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQL-----ktYa~Il--------------------~iPv~v------- 284 (432)
T PRK12724 237 TTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQL-----KRYADTM--------------------GMPFYP------- 284 (432)
T ss_pred HHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHH-----HHHHHHH--------------------CCCEEE-------
T ss_conf 99999999999997499279995266537799999-----9999985--------------------994599-------
Q ss_pred HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--H----HHHHHHH---CC--CCCCCCCCCHHHHHHHHHHHHHHHHC
Q ss_conf 320799999998999851288899738888898--9----9999862---01--25435787768899999999999981
Q gi|254780725|r 256 TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--W----TQEVLTL---SD--KVVITTSLDLAGLRNSKNLIDVLKKL 324 (427)
Q Consensus 256 ~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~----~~~~L~~---AD--~vviV~~p~~~slr~a~~ll~~l~~~ 324 (427)
-.++..+...+.. ..+|+|+||+...... . ....+.. .+ ++++|...+. .-++.+.+++.+...
T Consensus 285 --v~~~~el~~al~~--~~~DlILIDTAGrS~rd~~~~~eL~~ll~~~~~~~~ie~~LVLSaTt-k~~dl~~ii~~f~~l 359 (432)
T PRK12724 285 --VKDIKKFKETLAR--DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHTLTVLKAYESL 359 (432)
T ss_pred --EECHHHHHHHHHH--CCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCC-CHHHHHHHHHHHCCC
T ss_conf --5189999999985--69999999299989789999999999998636678851799997889-989999999984269
Q ss_pred CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHH
Q ss_conf 98767538999565898752005999999848953799-----068799
Q gi|254780725|r 325 RPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGA 368 (427)
Q Consensus 325 ~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~ 368 (427)
.+. .+|+.+.+-....- +.=.+....+.++... +|.|-.
T Consensus 360 ~~~----~lIfTKLDET~s~G-~ilni~~~~~~PisYiT~GQ~VPdDI~ 403 (432)
T PRK12724 360 NYR----RILLTKLDEADFLG-SFLELADTYSKSFTYLSVGQEVPFDIL 403 (432)
T ss_pred CCC----EEEEEECCCCCCCC-HHHHHHHHHCCCEEEEECCCCCCCCHH
T ss_conf 998----49997122779866-999999998898699808997971733
No 160
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.06 E-value=0.00019 Score=46.51 Aligned_cols=162 Identities=12% Similarity=0.089 Sum_probs=88.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC---CEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 6753799974698877568999999999962699---4999978798986033438998789888631845612433765
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAM---ETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~---~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
..+|||+++| --||||||+.+-||..++-..++ +|.||-+|..--.+.-.| .+.++.+
T Consensus 172 ~k~~vi~lVG-PTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQL-----ktya~il------------- 232 (388)
T PRK12723 172 LKKRIFILVG-PTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQI-----QTYGDIM------------- 232 (388)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHH-----HHHHHHH-------------
T ss_conf 5762899989-98875787999999999986267677379998078758899999-----9999997-------------
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH------HHHHHHHHC--C-CCCCCCCC
Q ss_conf 32024898068724876120320799999998999851288899738888898------999998620--1-25435787
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS------WTQEVLTLS--D-KVVITTSL 306 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~------~~~~~L~~A--D-~vviV~~p 306 (427)
|+.+-.. .+...+...+..+ ..||+|+||++..... .....+... | .+++|...
T Consensus 233 -------~vp~~v~---------~~~~dl~~~l~~~-~~~D~IlIDTAGrs~~d~~~~~el~~~~~~~~~~~~~~Lvlsa 295 (388)
T PRK12723 233 -------GIPVKAI---------ESFKDLKEEITQS-KDFDLVLIDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSS 295 (388)
T ss_pred -------CCCEEEE---------CCHHHHHHHHHHH-CCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf -------8806985---------7889999999972-4999999958998856899999999999741898459999879
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE
Q ss_conf 76889999999999998198767538999565898752005999999848953799
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI 362 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~ 362 (427)
+. .-++...+++.+...++ -.+|+.+.+.....- ..=.+....+.++...
T Consensus 296 t~-~~~d~~~i~~~f~~~~~----~~~I~TKlDEt~~~G-~~l~~~~~~~~Pi~yi 345 (388)
T PRK12723 296 TT-KTSDIKEIFHQFSPFSY----KTVIFTKLDETTCVG-NLISLIHEMRKEVSYV 345 (388)
T ss_pred CC-CHHHHHHHHHHHCCCCC----CEEEEEECCCCCCCC-HHHHHHHHHCCCEEEE
T ss_conf 89-99999999998427999----849998322789866-9999999988886999
No 161
>COG2403 Predicted GTPase [General function prediction only]
Probab=98.04 E-value=0.0011 Score=41.95 Aligned_cols=198 Identities=14% Similarity=0.152 Sum_probs=107.9
Q ss_pred HHHHHHHHHHCCCCCEEEEEECCCC---HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEC
Q ss_conf 8899988853289980899816871---8999999976562643189998999997631023322234567537999746
Q gi|254780725|r 93 LSALEPLAEVCDSGTKVIVIGDTND---VSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGS 169 (427)
Q Consensus 93 ~~~l~~la~~~~p~~~Vivig~~~d---~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~ 169 (427)
..+|+.+-+-.+-+.-|+..++..- ..+...++.+|+.=.+..|.+..... .-.+|+|++.
T Consensus 71 ~~~lek~ire~~VD~~VlaySDvs~e~v~~IaS~vLs~GA~f~~~gP~et~~~~----------------ekPviaV~at 134 (449)
T COG2403 71 YDDLEKIIREKDVDIVVLAYSDVSYEHVFRIASRVLSAGADFKELGPKETMLKL----------------EKPVIAVTAT 134 (449)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCCHHHHHH----------------CCCEEEEEEE
T ss_conf 899999998707661687701289899878999997478536872752776651----------------4855999972
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHH-----HHHHHHHHCCCCCE
Q ss_conf 9887756899999999996269949999787989860334389987898886318456124-----33765320248980
Q gi|254780725|r 170 RGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDK-----AFVSRLPVFYAENL 244 (427)
Q Consensus 170 KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~-----~~l~~~l~~~~~gL 244 (427)
+-|+|||+++.-+|..|.+ +|.++|.|-.-...+ |..+..+. +.+...+.+|. ..-+.+.....-+.
T Consensus 135 rtg~GKsaVS~~v~r~l~e-rgyrv~vVrhPmiy~------~~~ieitv-e~~~k~edld~ha~t~eereeye~~I~tg~ 206 (449)
T COG2403 135 RTGVGKSAVSRYVARLLRE-RGYRVCVVRHPMIYR------GDRIEITV-ERLAKLEDLDRHAATDEEREEYESYIPTGG 206 (449)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCEEEC------CCCCHHHH-HHHHCHHHCCCCCCCHHHHHHHHHCCCCCC
T ss_conf 3665567888999999986-698237995570233------77310018-977377652642255666887874364355
Q ss_pred EEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH-----------------------HHHHHHCCCCC
Q ss_conf 6872487612032079999999899985128889973888889899-----------------------99986201254
Q gi|254780725|r 245 SILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT-----------------------QEVLTLSDKVV 301 (427)
Q Consensus 245 ~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~-----------------------~~~L~~AD~vv 301 (427)
-++++ ..+..++.......|+|++|-+...-+.. .--+..||.+
T Consensus 207 ~vlAG------------vdy~~vlke~~~~aD~IlwdGgnndfPfvkpd~~Ivvvda~rpg~ei~~~pGe~~irlAD~V- 273 (449)
T COG2403 207 GVLAG------------VDYGTVLKEGEKEADFILWDGGNNDFPFVKPDLHIVVVDALRPGEEIGSFPGELRIRLADLV- 273 (449)
T ss_pred CEEEE------------EEHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCEEEEECCCCCCHHHCCCCCCEEEEECCEE-
T ss_conf 34652------------04899998776415589994888778852577059993388872565268773153221289-
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 35787768899999999999981987
Q gi|254780725|r 302 ITTSLDLAGLRNSKNLIDVLKKLRPA 327 (427)
Q Consensus 302 iV~~p~~~slr~a~~ll~~l~~~~~~ 327 (427)
+++-.+.++.....++.+.+++.++.
T Consensus 274 IItkveea~~~kvrkI~~~I~~iNP~ 299 (449)
T COG2403 274 IITKVEEAMAEKVRKIVRNIEEINPK 299 (449)
T ss_pred EEECCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 99613513367899999999860998
No 162
>PRK13558 bacterio-opsin activator; Provisional
Probab=98.04 E-value=3.8e-05 Score=50.81 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=77.3
Q ss_pred HHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCC
Q ss_conf 11002022373069989999998618998499998059876778899988853289980899816871899999997656
Q gi|254780725|r 50 DPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHV 129 (427)
Q Consensus 50 drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv 129 (427)
|++|..--..-..-+..+|.+.+.... -+-|+.|-.|+..++++.|+++++. +|..|+|+++...+-...++++.+||
T Consensus 35 ~~~~~~~~~~~~~~~~~~a~~r~~~~~-~DCvv~dy~~~~~dGieLLe~vRe~-~p~lP~Il~t~~gsE~vas~AI~AGv 112 (674)
T PRK13558 35 DLDEDGRFDVTQIRDFVAARDRVDDPD-IDCVVAVHEPDGFDGVAFLEAVRQT-HAEFPVVVVPTAVDEDVARRAVDADA 112 (674)
T ss_pred CCCCCCCCCEEEECCHHHHHHHHCCCC-CCEEEECCCCCCCCHHHHHHHHHHC-CCCCCEEEEECCCCHHHHHHHHHHCH
T ss_conf 566677421276323888986531589-8769965657888679999998613-89998899956785899999875163
Q ss_pred CEEECCCCCHHHHHHHHHHCC
Q ss_conf 264318999899999763102
Q gi|254780725|r 130 SEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 130 ~dyl~~P~~~~~l~~ai~~~~ 150 (427)
.+||.+ +..+....+....
T Consensus 113 t~Ylp~--~~~~~~~~~~~~i 131 (674)
T PRK13558 113 TGLVPA--VSEDATAAIADRI 131 (674)
T ss_pred HHHCCC--CCHHHHHHHHHHH
T ss_conf 643344--7176899999999
No 163
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.97 E-value=8.8e-05 Score=48.56 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=90.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
..-..||++|. -||||||..+-||+.+.. .+++|.||-.|..-=.+. |=|..-. +++
T Consensus 239 ~~~q~IALVGP-TGVGKTTTIAKLAArf~~-~~KkVALITtDTYRIGAV------------EQLKTYA--------eIM- 295 (436)
T PRK11889 239 KEVQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTV------------QQLQDYV--------KTI- 295 (436)
T ss_pred HHCEEEEEECC-CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHH------------HHHHHHH--------HHH-
T ss_conf 41717999899-998889999999999861-698089998066347699------------9999999--------984-
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH--CCCEEEECCCCCCC--HHH----HHHHHH--CCCCCCCCCCCH
Q ss_conf 24898068724876120320799999998999851--28889973888889--899----999862--012543578776
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ--IFPLVILDVPHVWN--SWT----QEVLTL--SDKVVITTSLDL 308 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~--~yd~VIiD~p~~~~--~~~----~~~L~~--AD~vviV~~p~~ 308 (427)
++.+... .++..+...+..++. .||+|+||+..... ... ...+.. .+.+++|...+.
T Consensus 296 ----gVPV~VV---------~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATT 362 (436)
T PRK11889 296 ----GFEVIAV---------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ----CCCEEEE---------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf ----9943996---------888999999998763368888999298988468999999999985127771699997889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHHH
Q ss_conf 889999999999998198767538999565898752005999999848953799-----0687999
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGAV 369 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~~ 369 (427)
.-++.+.+++.++..++ -.+|+.+.+..... -..=.+....+.++... +|.|...
T Consensus 363 -K~~DL~eIi~rF~~l~i----dglIfTKLDET~Sl-G~ILNv~~~s~LPIsYvTdGQ~VPEDIev 422 (436)
T PRK11889 363 -KSKDMIEIITNFKDIHI----DGIVFTKFDETASS-GELLKIPAVSSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred -CHHHHHHHHHHHCCCCC----CEEEEEECCCCCCC-HHHHHHHHHHCCCEEEECCCCCCCCCHHH
T ss_conf -98999999997257998----82899713256870-37888998839987997899858753000
No 164
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=97.95 E-value=0.00011 Score=48.09 Aligned_cols=175 Identities=18% Similarity=0.199 Sum_probs=105.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
--+|.|+| --|+||||...-||..+-+ .|++|++.=+|.-- ..+ +.+.. ..-++
T Consensus 139 p~Vil~vG-VNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFR-AaA--------------iEQL~----~w~er----- 192 (340)
T COG0552 139 PFVILFVG-VNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFR-AAA--------------IEQLE----VWGER----- 192 (340)
T ss_pred CEEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCHHH-HHH--------------HHHHH----HHHHH-----
T ss_conf 67999993-4888637179999999997-89869998233478-999--------------99999----99999-----
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH---------HHHHHHC-----CCCCCCCCC
Q ss_conf 89806872487612032079999999899985128889973888889899---------9998620-----125435787
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT---------QEVLTLS-----DKVVITTSL 306 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~---------~~~L~~A-----D~vviV~~p 306 (427)
-|..++..... .+...-.++.+-..-.+.||+|++|+..+...-. ..++... ++++++.+.
T Consensus 193 -~gv~vI~~~~G----~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 193 -LGVPVISGKEG----ADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred -HCCEEECCCCC----CCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEC
T ss_conf -59927825999----9808999999999997699999996755445736689999999998464568998428999775
Q ss_pred --CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHHHHH
Q ss_conf --7688999999999999819876753899956589875200599999984895379---------9068799999988
Q gi|254780725|r 307 --DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFGMSA 374 (427)
Q Consensus 307 --~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~~A~ 374 (427)
-..++..++.+-+.+. --.+|+.+.+...++-+ .=.+...++.|+.. ..|||++.|..+.
T Consensus 268 ttGqnal~QAk~F~eav~-------l~GiIlTKlDgtAKGG~-il~I~~~l~~PI~fiGvGE~~~DL~~Fd~~~fv~~L 338 (340)
T COG0552 268 TTGQNALSQAKIFNEAVG-------LDGIILTKLDGTAKGGI-ILSIAYELGIPIKFIGVGEGYDDLRPFDAEWFVDAL 338 (340)
T ss_pred CCCHHHHHHHHHHHHHCC-------CCEEEEEECCCCCCCCE-EEEHHHHHCCCEEEEECCCCHHHCCCCCHHHHHHHH
T ss_conf 647568999999987528-------86699970246777624-350888869997998578884432006999999986
No 165
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase; InterPro: IPR004484 This family describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of cobyrinic acid to cobyrinic acid a,c-diamide via the intermediate formation of cobyrinic acid c-monoamide or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation .; GO: 0042242 cobyrinic acid ac-diamide synthase activity, 0009236 cobalamin biosynthetic process.
Probab=97.88 E-value=0.0008 Score=42.67 Aligned_cols=198 Identities=18% Similarity=0.152 Sum_probs=114.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|.+.|...+||||||++.+=.+|+++ +.+| |.=-+ +||-+|+.+
T Consensus 2 VviAGt~S~vGKT~I~~g~m~~L~~~-~~~V-------Q~fKV-----------------GPDYIDP~f----------- 45 (464)
T TIGR00379 2 VVIAGTSSKVGKTTISTGIMKALSRR-KLEV-------QPFKV-----------------GPDYIDPSF----------- 45 (464)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCC-CCCC-------CCEEE-----------------CCCCCCCCC-----------
T ss_conf 78830568754789999999998618-6324-------65442-----------------587437884-----------
Q ss_pred EEEEE-C--CCCCCCHHCCCHHHHHHHHHHHHHCC--CEEEECCCC---------CCCH--HHHHHHHHCCC-CCCCCCC
Q ss_conf 06872-4--87612032079999999899985128--889973888---------8898--99999862012-5435787
Q gi|254780725|r 244 LSILT-A--PAMLSRTYDFDEKMIVPVLDILEQIF--PLVILDVPH---------VWNS--WTQEVLTLSDK-VVITTSL 306 (427)
Q Consensus 244 L~lL~-a--~~~~~~~~~~~~~~l~~ll~~l~~~y--d~VIiD~p~---------~~~~--~~~~~L~~AD~-vviV~~p 306 (427)
|-++ + .+.+| ...++...+..++....+.- |+-||--=. ..++ -|.++...-|. ||+|++.
T Consensus 46 -H~~aTGr~sRNLD-sF~~~~~~i~~~F~~~~~~~Gs~~s~IEGv~GLYdg~Py~a~~d~gStA~vAk~L~~PvvLv~n~ 123 (464)
T TIGR00379 46 -HTLATGRKSRNLD-SFFMSEAQIKELFIRHSKGAGSDVSIIEGVRGLYDGIPYSAISDKGSTASVAKALDAPVVLVVNA 123 (464)
T ss_pred -CCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEC
T ss_conf -5411478666768-53302899999999861347896579727413436768877687751889999865988999956
Q ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH-CCCEEEEECCCHHHHHHHHHCC-CCEEEEC
Q ss_conf 7688999999999999819876753899956589875200599999984-8953799068799999988479-6189888
Q gi|254780725|r 307 DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPL-GITPSAIIPFDGAVFGMSANSG-KMIHEVD 384 (427)
Q Consensus 307 ~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~l-g~~~~~~IP~D~~~~~~A~~~G-~pi~e~~ 384 (427)
. .=-|.+..++.=.+...++..--++|+||++..+..+.....+++.. |.++.++||+..++-..---.| .|-.|.
T Consensus 124 ~-~L~~saaAiv~Gy~~fdp~V~l~GVILN~V~~~rH~~k~k~A~e~L~Pgi~vlG~~pR~~~l~~p~RHLGLVpa~E~- 201 (464)
T TIGR00379 124 K-RLSRSAAAIVLGYRSFDPDVKLKGVILNRVGSERHLEKLKTAVEKLAPGIEVLGVIPRKEDLKVPDRHLGLVPAVER- 201 (464)
T ss_pred C-HHHHHHHHHHHHHHHCCCCCEEEEEEEEEECCHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCCCC-
T ss_conf 4-03357867764134308983178788731077446899999988636894588777367532147754653166135-
Q ss_pred CCCHHHHHHHHHHHHHH
Q ss_conf 99989999999999985
Q gi|254780725|r 385 PKSAIANLLVDFSRVLM 401 (427)
Q Consensus 385 p~s~~a~~~~~La~~i~ 401 (427)
-+....+-+..|+..+.
T Consensus 202 l~~~~~~~~~~la~~~e 218 (464)
T TIGR00379 202 LDEIIQQILDWLAEVVE 218 (464)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 31789999999999999
No 166
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.83 E-value=0.00045 Score=44.21 Aligned_cols=145 Identities=18% Similarity=0.186 Sum_probs=78.3
Q ss_pred HHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 99999976562643189998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 120 LYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 120 l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
-.|+.++.|.. ++.-++..++++.+++. -|...+.|-+|=++| =.|.||||||..|...|-+..++.|.++|-
T Consensus 357 elr~~L~~G~~--IPeWft~PeV~~eLrr~----~PPr~~~G~tiwlTG-LsgsGKsTiA~al~~~L~~~~~~~v~lLDG 429 (568)
T PRK05537 357 ELRRRLREGLE--IPEWFSFPEVVAELRRT----YPPRHKQGFTVFFTG-LSGAGKSTIAKALMAKLMEMRGRPVTLLDG 429 (568)
T ss_pred HHHHHHHCCCC--CCCCCCCHHHHHHHHHH----CCCCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEECC
T ss_conf 99999867998--99553877899999985----687445864999845-788877699999999999718927999546
Q ss_pred CCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEE
Q ss_conf 79898603343899878988863184561243376532024898068724876120320799999998999851288899
Q gi|254780725|r 200 DLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVI 279 (427)
Q Consensus 200 Dl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VI 279 (427)
|.--..++..|| ++-.|-..+..|+.. +-+.+.. .|+-++.+.-.+... ..+..+.+++.. ..|=-|.
T Consensus 430 D~~R~~l~~dLg----fs~~dR~enirR~~~--va~~~~~--~g~i~i~a~isP~~~---~R~~~r~~~~~~-~~f~ev~ 497 (568)
T PRK05537 430 DVVRKHLSSELG----FSKEDRDLNILRIGF--VASEITK--NGGIAICAPIAPYRA---TRREVREMIEAF-GAFIEVY 497 (568)
T ss_pred HHHHHHHCCCCC----CCHHHHHHHHHHHHH--HHHHHHH--CCCEEEEEECCCCHH---HHHHHHHHHCCC-CCEEEEE
T ss_conf 888742155789----898899999999999--9999985--897899950699979---999999985237-9779999
Q ss_pred ECCC
Q ss_conf 7388
Q gi|254780725|r 280 LDVP 283 (427)
Q Consensus 280 iD~p 283 (427)
||+|
T Consensus 498 v~~p 501 (568)
T PRK05537 498 VATP 501 (568)
T ss_pred ECCC
T ss_conf 7898
No 167
>pfam10609 ParA ParA/MinD ATPase like. This family contains ATPases involved in plasmid partitioning. It also contains the cytosolic Fe-S cluster assembling factor NBP35 which is required for biogenesis and export of both ribosomal subunits.
Probab=97.80 E-value=9.3e-05 Score=48.41 Aligned_cols=63 Identities=24% Similarity=0.205 Sum_probs=54.5
Q ss_pred CCEEEECCCCCCCHHHHHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8889973888889899999862--0125435787768899999999999981987675389995658
Q gi|254780725|r 275 FPLVILDVPHVWNSWTQEVLTL--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVK 339 (427)
Q Consensus 275 yd~VIiD~p~~~~~~~~~~L~~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~ 339 (427)
.||+|||+||+.++....+++. .+..++|++|...|+..++|.++++++.+. .-+.+|-||..
T Consensus 1 LDyLiiD~PPGTgD~~ltl~~~~~~~~~ivVTTP~~ls~~dv~r~i~~~~~~~i--~ilGiVENMs~ 65 (81)
T pfam10609 1 LDYLIIDMPPGTGDEHLTLAQSLPVDGAVIVTTPQDVALLDVRKAIDMFKKLNV--PILGIVENMSY 65 (81)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHCCC--CEEEEEECCCC
T ss_conf 989999489996789999997488577699809859999999999999998499--61899977975
No 168
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.73 E-value=0.0018 Score=40.52 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=92.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|+++| .+|.||||++=.+.+. +.... +.-=|| .|++-.++ ++.-.+| +
T Consensus 2 iai~g-H~gaGKTtL~EalL~~-ag~i~-r~G~v~----~g~tv~D~------------------~~eE~~R-------~ 49 (270)
T cd01886 2 IGIIA-HIDAGKTTTTERILYY-TGRIH-KIGEVH----GGGATMDF------------------MEQERER-------G 49 (270)
T ss_pred EEEEE-CCCCCHHHHHHHHHHH-CCCCC-CCCEEC----CCCCCCCC------------------CHHHHHC-------C
T ss_conf 89996-8999988999999986-68735-581553----89755668------------------4889876-------8
Q ss_pred EEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 068724876120320799999998999851288899738888898--999998620125435787768899999999999
Q gi|254780725|r 244 LSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--WTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL 321 (427)
Q Consensus 244 L~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l 321 (427)
.++-++..... ...+-+-++|+|...+. .+..+|..+|..++|+...-.---.+.++.+.+
T Consensus 50 isi~~~~~~~~-----------------w~~~~inliDTPG~~DF~~e~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~ 112 (270)
T cd01886 50 ITIQSAATTCF-----------------WKDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQA 112 (270)
T ss_pred CEEECCEEEEE-----------------ECCEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 70733668999-----------------8998999986969678899999998775559999846764426369999889
Q ss_pred HHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEE-EEEC
Q ss_conf 9819876753899956589875-20059999998489537-9906
Q gi|254780725|r 322 KKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPS-AIIP 364 (427)
Q Consensus 322 ~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~-~~IP 364 (427)
++.+. +..+++|+.+.+.. ..-..+++++.+|.++. ..+|
T Consensus 113 ~~~~l---P~i~fINKmDre~ad~~~~l~~i~~~lg~~~vp~~~P 154 (270)
T cd01886 113 DRYNV---PRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLP 154 (270)
T ss_pred HHCCC---CEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEE
T ss_conf 98499---9899998878778871668999999858973889856
No 169
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.73 E-value=0.0014 Score=41.20 Aligned_cols=156 Identities=15% Similarity=0.143 Sum_probs=93.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
|-|+++| .+|+||||++=.|.+.- .. -.+.--|+.....|++..++ ++.-.+|
T Consensus 3 Rniai~g-H~gaGKTtL~EalL~~~-G~-i~r~G~V~~~~~~g~t~~D~------------------~~eE~~R------ 55 (267)
T cd04169 3 RTFAIIS-HPDAGKTTLTEKLLLFG-GA-IREAGAVKARKSRKHATSDW------------------MEIEKQR------ 55 (267)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHC-CC-CCCCCEEEECCCCCCCCCCC------------------HHHHHHC------
T ss_conf 1799984-79999899999999866-86-33385463036888604688------------------7999865------
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 98068724876120320799999998999851288899738888898--9999986201254357877688999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--WTQEVLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
|.++-++..... ...+.+=+||+|...+. .+..+|..+|..++|+...-.---.+.++.+
T Consensus 56 -~iSi~~~~~~~~-----------------w~~~kinliDTPG~~DF~~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~ 117 (267)
T cd04169 56 -GISVTSSVMQFE-----------------YRDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFE 117 (267)
T ss_pred -CCEEECCEEEEE-----------------ECCEEEEEEECCCCHHHHHHHHHHHHHHHCEEEEEECCCCCCHHHHHHHH
T ss_conf -944863637887-----------------89989999979697789999999998864547995256665355899999
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCE-EEEECC
Q ss_conf 999819876753899956589875-2005999999848953-799068
Q gi|254780725|r 320 VLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITP-SAIIPF 365 (427)
Q Consensus 320 ~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~-~~~IP~ 365 (427)
+.++.+. +..+++|+.+.... ..-..+++++.+|.++ ...+|.
T Consensus 118 ~a~~~~i---P~iifINKmDr~~adf~~~l~~i~~~lg~~~vpi~lPi 162 (267)
T cd04169 118 VCRLRGI---PIITFINKLDREGRDPLELLDEIEEELGIDCTPLTWPI 162 (267)
T ss_pred HHHHCCC---CEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 9997299---97999853456789878999999998687751168775
No 170
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=97.70 E-value=0.00016 Score=46.98 Aligned_cols=151 Identities=19% Similarity=0.158 Sum_probs=84.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEEC
Q ss_conf 98877568999999999962699499997879898603343899878988863184561243376532024898068724
Q gi|254780725|r 170 RGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTA 249 (427)
Q Consensus 170 KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a 249 (427)
--|+||||....+...+.. .++++.+|.|||..-... -++.-.+.|.+. ++..+.... | =|
T Consensus 4 paGSGKTT~~~~l~~~l~~-~~r~~~vvNLDPA~e~~p----Y~~~iDIrd~i~---------~~dvM~~~~--L--GP- 64 (234)
T pfam03029 4 GAGSGKTTFVGALSEILPL-RGRSVYVVNLDPAAENLP----YEADIDIRELIT---------VADVMEDYG--L--GP- 64 (234)
T ss_pred CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCCC----CCCCCCHHHHCC---------HHHHHHHCC--C--CC-
T ss_conf 8989889999999999997-799759997898665899----987771787467---------999999829--8--97-
Q ss_pred CCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH--------HHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-
Q ss_conf 87612032079999999899985128889973888889899--------999862012543578776889999999999-
Q gi|254780725|r 250 PAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT--------QEVLTLSDKVVITTSLDLAGLRNSKNLIDV- 320 (427)
Q Consensus 250 ~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~--------~~~L~~AD~vviV~~p~~~slr~a~~ll~~- 320 (427)
...+-...++-...+.++.+.+....+|+++|+|.+..-++ ...|... .++.|.--|..-+.+...++..
T Consensus 65 NGali~~me~l~~~~d~l~~~l~~~~~y~l~DtPGQiElf~~~~~~~~i~~~L~~~-~~~~v~l~D~~~~~d~~~fis~~ 143 (234)
T pfam03029 65 NGALTVAMDFGRITLDWLLEELEYEDDYYLFDTPGQIELFTHWDSLARGVEALEAS-RLGAVYLVDTRRLTDPIDFFSGL 143 (234)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEECCHHHHHHHHHHHCC-CEEEEEEECHHHHCCHHHHHHHH
T ss_conf 38999999999999999999852557769983698357654002699999997128-73899984257746888899999
Q ss_pred ----HHHCCCCCCCCEEEEECCCCC
Q ss_conf ----998198767538999565898
Q gi|254780725|r 321 ----LKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 321 ----l~~~~~~~~~~~iVlNr~~~~ 341 (427)
....+.. -+...|+|+++.-
T Consensus 144 L~a~s~m~~l~-lP~vnvlsK~Dl~ 167 (234)
T pfam03029 144 LYALSIMLRLG-LPFVVALNKFDLL 167 (234)
T ss_pred HHHHHHHHHCC-CCEEEEECCHHCC
T ss_conf 99999999748-9944310004135
No 171
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=97.70 E-value=0.0041 Score=38.33 Aligned_cols=158 Identities=15% Similarity=0.201 Sum_probs=95.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 753799974698877568999999999962699499997879898-6033438998789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG-TANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g-~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
++.+|.|+| --|+||||+---|.-.|-+ .|++|.+|=-||... |-+..|| +.-|++...-...+
T Consensus 37 nA~~vG~TG-~PGaGKSTl~~~l~~~lrR-rG~~VaViAvDP~SPfTGGsiLG------------Dr~Rm~~~asrkql- 101 (333)
T TIGR00750 37 NAHVVGITG-VPGAGKSTLVEKLIMELRR-RGLKVAVIAVDPSSPFTGGSILG------------DRLRMQRLASRKQL- 101 (333)
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCHHHHH------------HHHHHHHHHHHHHH-
T ss_conf 907876646-8888577799999899976-59768999887975975514545------------68877544222233-
Q ss_pred CCCCCEEEEECCCCCCCHHCCCH--HHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 24898068724876120320799--9999989998512888997388888989999986201254357877688999999
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDE--KMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~--~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
-..+|.++=|.|..-. .-.++. ..+-.+++. -.||+|+|-|= +.+..--.+...+|.+++|+-|..-.=
T Consensus 102 W~dPg~FIRs~ptrG~-lGGls~at~~~~~lldA--~G~DVI~vETV-GVGQSEVdi~~~aDT~v~v~~pg~GDd----- 172 (333)
T TIGR00750 102 WTDPGVFIRSMPTRGS-LGGLSKATRELVKLLDA--AGYDVILVETV-GVGQSEVDIINMADTFVVVTIPGTGDD----- 172 (333)
T ss_pred HCCCCCEECCCCCCCC-HHHHHHHHHHHHHHHHH--CCCCEEEEEEE-CCCHHHHHHHHHHCEEEEEECCCCCCH-----
T ss_conf 2289856767766675-25787999999999986--38987999841-575248788734150589854887834-----
Q ss_pred HHHHHHH--CCCCCCCCEEEEECCCCCCCCH
Q ss_conf 9999998--1987675389995658987520
Q gi|254780725|r 317 LIDVLKK--LRPADKPPYLVLNQVKTPKKPE 345 (427)
Q Consensus 317 ll~~l~~--~~~~~~~~~iVlNr~~~~~~~~ 345 (427)
+..+|+ +...| .+|+|+.+.+...+
T Consensus 173 -~Q~iKaG~mEiaD---I~VVNKaD~~~a~~ 199 (333)
T TIGR00750 173 -VQGIKAGVMEIAD---IYVVNKADGEGAEE 199 (333)
T ss_pred -HHHHHHHHHEEEE---EEEEECCCCCCHHH
T ss_conf -6666544302324---87881688766589
No 172
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=97.67 E-value=0.00056 Score=43.64 Aligned_cols=126 Identities=13% Similarity=0.092 Sum_probs=90.2
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|..+|.--|||||.+++.|+.+|.+ .|.+|...- +.
T Consensus 1 ~~~~GTdT~VGKT~vt~~l~~~l~~-~G~~v~~~K--Pv----------------------------------------- 36 (134)
T cd03109 1 IMGFGTGTDIGKTVATAILARALKE-KGYRVAPLK--PV----------------------------------------- 36 (134)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEC--HH-----------------------------------------
T ss_conf 9575278887689999999999997-799177875--66-----------------------------------------
Q ss_pred EEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC------CHHHHHHHHHC-CCCCCCCCCCHHHHHHHHH
Q ss_conf 0687248761203207999999989998512888997388888------98999998620-1254357877688999999
Q gi|254780725|r 244 LSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW------NSWTQEVLTLS-DKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 244 L~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~------~~~~~~~L~~A-D~vviV~~p~~~slr~a~~ 316 (427)
+.||+|++.-..+| .......+... --+++|+...+.++-.+--
T Consensus 37 -----------------------------~t~D~vlVEGaGG~~vPl~~~~~~~Dl~~~l~~pvIlV~~~~LG~INhtlL 87 (134)
T cd03109 37 -----------------------------QTYDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFL 87 (134)
T ss_pred -----------------------------HCCCEEEEECCCCEEECCCCCCCHHHHHHHHCCCEEEEECCCCCHHHHHHH
T ss_conf -----------------------------727989998897746003898629999997099989997788785899999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCC-CCHHHHHHHHHHHCCCEEEEEC
Q ss_conf 99999981987675389995658987-5200599999984895379906
Q gi|254780725|r 317 LIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDFCAPLGITPSAIIP 364 (427)
Q Consensus 317 ll~~l~~~~~~~~~~~iVlNr~~~~~-~~~i~~~~~~~~lg~~~~~~IP 364 (427)
.++.+++.+.+ ...+|+|++.... ..+...+.+++..+.++.+++|
T Consensus 88 t~eal~~~gi~--v~G~i~N~~~~~~~~~~~N~~~I~~~t~vPvLG~vP 134 (134)
T cd03109 88 TIEAARIKGII--LNGVLGNVIVEKEGLATLNVETIERLTGIPVLGIVP 134 (134)
T ss_pred HHHHHHHCCCC--EEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECC
T ss_conf 99999987992--889999467997106787599999974999778288
No 173
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=97.65 E-value=0.00078 Score=42.74 Aligned_cols=113 Identities=17% Similarity=0.352 Sum_probs=89.5
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-C-
Q ss_conf 5999838989999999886411002022373-069989999998618998499998059876778899988853289-9-
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS-G- 106 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p-~- 106 (427)
.|. -+||=+.-..|-.++ +.+=+.+| -+-+...|.+.+.....-|++++|++.|..||++-+.+|....+. .
T Consensus 763 ~vL-lVEDN~vN~~VA~gf----L~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~ 837 (1052)
T TIGR02956 763 RVL-LVEDNEVNQMVAQGF----LERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKND 837 (1052)
T ss_pred EEE-EEECCHHHHHHHHHH----HHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 132-464474779999999----842794472085499999998548876754551578898656789999999973204
Q ss_pred -----CEEEEEECC---CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf -----808998168---71899999997656264318999899999763102
Q gi|254780725|r 107 -----TKVIVIGDT---NDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 107 -----~~Vivig~~---~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
.|.|.++.+ .|+..|+ .+|+..||.||+...+|.+.|.+.+
T Consensus 838 ~~~~p~k~iAvSAHVf~Edv~~y~---~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 838 SQDEPVKFIAVSAHVFNEDVAQYL---AAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 445677722211334477699997---5302663479987788999999987
No 174
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.64 E-value=0.0019 Score=40.35 Aligned_cols=89 Identities=12% Similarity=0.205 Sum_probs=69.5
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHH
Q ss_conf 128889973888889--89999986201254357877688999999999999819876753899956589875-200599
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~ 349 (427)
+.+-+-+||+|...+ ..+..+|..+|..++|+.+.-.-=-++.++.+.+++.+. +..+++|+++.+.. ..-..+
T Consensus 62 ~~~~inliDTPG~~DF~~e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~i---P~i~fINKmDr~~ad~~~~l~ 138 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGI---PRIIFINKMDRERADFDKTLA 138 (268)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHHH
T ss_conf 99799998698975799999998404783999941875476879999999998599---989999787878996477999
Q ss_pred HHHHHHCCCEE-EEEC
Q ss_conf 99998489537-9906
Q gi|254780725|r 350 DFCAPLGITPS-AIIP 364 (427)
Q Consensus 350 ~~~~~lg~~~~-~~IP 364 (427)
++++.++.++. ..+|
T Consensus 139 ~i~~~lg~~~vp~~~P 154 (268)
T cd04170 139 ALQEAFGRPVVPLQLP 154 (268)
T ss_pred HHHHHHCCCEEEEEEE
T ss_conf 9999868984999966
No 175
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.63 E-value=0.0019 Score=40.31 Aligned_cols=40 Identities=20% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 675379997469887756899999999996269949999787
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..|.++-++| --|+||||++..+|...+. .|.+|+++|..
T Consensus 21 ~~G~itei~G-~pG~GKTtl~lq~a~~~~~-~g~~vlYidtE 60 (224)
T PRK09361 21 ERGTITQIYG-PPGSGKTNICIQLAVEAAR-QGKKVIYIDTE 60 (224)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCC
T ss_conf 8887999989-9998599999999999997-49909996787
No 176
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.62 E-value=0.001 Score=42.00 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=65.3
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHH
Q ss_conf 12888997388888--989999986201254357877688999999999999819876753899956589875-200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~ 349 (427)
..+.+-+||+|... ...+..+|..+|..++|+.+.-.---.+.++++.+++.+.+ ..+++|+.+.+.. .....+
T Consensus 62 ~~~~~n~iDtPG~~dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P---~iifiNKmDre~adf~~~l~ 138 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP---TIIFVNKIDRAGADLEKVYQ 138 (237)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHHHH
T ss_conf 998799988988465666898897634816999965888223449999999985998---59986244578999999999
Q ss_pred HHHHHHCCCEE
Q ss_conf 99998489537
Q gi|254780725|r 350 DFCAPLGITPS 360 (427)
Q Consensus 350 ~~~~~lg~~~~ 360 (427)
++++.++.++.
T Consensus 139 ~i~~~l~~~~~ 149 (237)
T cd04168 139 EIKEKLSSDIV 149 (237)
T ss_pred HHHHHHCCCEE
T ss_conf 99999789747
No 177
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.57 E-value=0.0062 Score=37.23 Aligned_cols=161 Identities=13% Similarity=0.151 Sum_probs=97.8
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEE
Q ss_conf 59998389899999998864110020223730699899999986189984999980598767788999888532899808
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKV 109 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~V 109 (427)
.|..--++.-...+|.+..+. -.+..+-....+...|++....- .||+|.+|+.|+-+|+++.|+.+-.. ..++|
T Consensus 3 rVlvVddsal~R~~i~~~l~~--~~~i~vv~~a~ng~~a~~~~~~~-~PDVi~ld~emp~mdgl~~l~~im~~--~p~pV 77 (350)
T COG2201 3 RVLVVDDSALMRKVISDILNS--DPDIEVVGTARNGREAIDKVKKL-KPDVITLDVEMPVMDGLEALRKIMRL--RPLPV 77 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHC-CCCEEEEECCCCCCCHHHHHHHHHCC--CCCCE
T ss_conf 799985819999999999830--89737997337879999999722-99789972566445479999998447--99868
Q ss_pred EEEECCCC--HHHHHHHHHCCCCEEECCCCCH---------HHHHHHHHHCCC-------CC----CC------CCCCCC
Q ss_conf 99816871--8999999976562643189998---------999997631023-------32----22------345675
Q gi|254780725|r 110 IVIGDTND--VSLYRALISNHVSEYLIEPLSV---------ADIINSISAIFT-------PQ----EE------GKGSSG 161 (427)
Q Consensus 110 ivig~~~d--~~l~r~l~r~Gv~dyl~~P~~~---------~~l~~ai~~~~~-------~~----~~------~~~~~g 161 (427)
|+++.... -..-.+++..|+.||+.+|... .++++-+..... .+ .+ .....-
T Consensus 78 imvsslt~~g~~~t~~al~~gAvD~i~kp~~~i~~~~~~~~~~l~~kv~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (350)
T COG2201 78 IMVSSLTEEGAEATLEALELGAVDFIAKPSGGISLGLDEVAELLIEKVRAAARQNRKSLRTPEPPRAPAFRPVKPGPAAR 157 (350)
T ss_pred EEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99951452137999999845742132178765444667889999999998752442013566778754357777778876
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 3799974698877568999999999962699499997
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
++|++..+-||..+ +..=|.. |-...+..++++-
T Consensus 158 ~iV~IGaStGGp~A--L~~il~~-lP~~~p~pvvIvQ 191 (350)
T COG2201 158 KIVAIGASTGGPAA--LRAVLPA-LPADFPAPVVIVQ 191 (350)
T ss_pred CEEEEEECCCCHHH--HHHHHHH-CCCCCCCCEEEEE
T ss_conf 38999947899999--9999975-8988899879994
No 178
>KOG0780 consensus
Probab=97.57 E-value=0.0023 Score=39.88 Aligned_cols=174 Identities=15% Similarity=0.142 Sum_probs=94.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
--||-|+|- -|+||||..+-+|+++-+ .|.+++||=.|..-..+- |+.- ....+
T Consensus 101 psVimfVGL-qG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAf---------------------DQLk--qnA~k- 154 (483)
T KOG0780 101 PSVIMFVGL-QGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAF---------------------DQLK--QNATK- 154 (483)
T ss_pred CCEEEEEEC-CCCCCCEEHHHHHHHHHH-CCCCEEEEEECCCCCCHH---------------------HHHH--HHHHH-
T ss_conf 708999830-578863008999999984-687245776022453068---------------------9999--87674-
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH---HHHHHHH-----HCCCCCCCCCCCHHHHH
Q ss_conf 898068724876120320799999998999851288899738888898---9999986-----20125435787768899
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS---WTQEVLT-----LSDKVVITTSLDLAGLR 312 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~---~~~~~L~-----~AD~vviV~~p~~~slr 312 (427)
.++.+..+....+ +..+. ...+-..=+++||+||+|+...... ...++.+ .-|.++.|.+.+..-
T Consensus 155 -~~iP~ygsyte~d-pv~ia---~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ-- 227 (483)
T KOG0780 155 -ARVPFYGSYTEAD-PVKIA---SEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ-- 227 (483)
T ss_pred -HCCEEEECCCCCC-HHHHH---HHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCH--
T ss_conf -0770684036655-58999---9999988863972899827873012489999999998515987389998562007--
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC--HHHHHHHHHHHCCCEEE---------EECCCHHHHHHH
Q ss_conf 99999999998198767538999565898752--00599999984895379---------906879999998
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKP--EISISDFCAPLGITPSA---------IIPFDGAVFGMS 373 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~--~i~~~~~~~~lg~~~~~---------~IP~D~~~~~~A 373 (427)
++......+++ ...--.+++.+.+...++ -++. ..+.+.++.. .=|||++.|...
T Consensus 228 aae~Qa~aFk~---~vdvg~vIlTKlDGhakGGgAlSa---VaaTksPIiFIGtGEhmdDlE~F~pk~Fvsr 293 (483)
T KOG0780 228 AAEAQARAFKE---TVDVGAVILTKLDGHAKGGGALSA---VAATKSPIIFIGTGEHMDDLEPFDPKPFVSR 293 (483)
T ss_pred HHHHHHHHHHH---HHCCCEEEEEECCCCCCCCCEEEE---HHHHCCCEEEEECCCCCCCCCCCCHHHHHHH
T ss_conf 67999998877---615403799722567777734530---3540798799816755111577780779998
No 179
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.52 E-value=0.0035 Score=38.73 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=38.1
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEE-EC-CCH----HHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHCCCC
Q ss_conf 838989999999886411002022373-06-998----9999998618998499998-0598767788999888532899
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TR-GSI----AEAVSCFSDSSTPDLIIVQ-TKVDSREVLSALEPLAEVCDSG 106 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~-g~~----~~A~~~~~~~~~P~~iivd-~~~~~~~~~~~l~~la~~~~p~ 106 (427)
+.++|-........-.--|..-..+-| .. .|+ ...-+.++....|-+++|- ++-+..+....|++|.+.....
T Consensus 83 liDTPGh~DF~~e~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~ad~~~~l~ei~~~lg~~ 162 (526)
T PRK00741 83 LLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLELLDEIEEVLGIA 162 (526)
T ss_pred EEECCCCHHHHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99098946778999999987375999997775523336899999886399889999656767898789887788874787
No 180
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.47 E-value=0.0034 Score=38.79 Aligned_cols=40 Identities=23% Similarity=0.282 Sum_probs=33.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 675379997469887756899999999996269949999787
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..|.++-++| -.|+||||++..+|...++ .+.+|+++|.-
T Consensus 17 ~~G~it~i~G-~pG~GKStl~lq~a~~~~~-~g~~v~YidtE 56 (218)
T cd01394 17 ERGTVTQVYG-PPGTGKTNIAIQLAVETAG-QGKKVAYIDTE 56 (218)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECC
T ss_conf 7887999989-9998499999999999863-69869999665
No 181
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.45 E-value=0.0046 Score=38.01 Aligned_cols=142 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 34567537999746988775689999999999626994999978798986033438998789888631845612433765
Q gi|254780725|r 156 GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 156 ~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
+.-+.|+|+=|+| -.|.||||+|++++... +..+.+++.||.--.+. |+|+ ..
T Consensus 55 GGl~~g~ItEiyG-~~gsGKT~lal~~~~~a-q~~g~~a~fIDtE~~l~--------------------p~r~-----~~ 107 (279)
T COG0468 55 GGLPRGRITEIYG-PESSGKTTLALQLVANA-QKPGGKAAFIDTEHALD--------------------PERA-----KQ 107 (279)
T ss_pred CCCCCCEEEEEEC-CCCCCHHHHHHHHHHHH-HCCCCEEEEEECCCCCC--------------------HHHH-----HH
T ss_conf 8865535899846-88765466899998886-53798089995899989--------------------9999-----99
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHH-HHHHH
Q ss_conf 32024898068724876120320799999998999851288899738888898999998620125435787768-89999
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLA-GLRNS 314 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~-slr~a 314 (427)
......+++.+.-.. +.+. ..+.+..+.....+.++.||||.-...-+ ..... | ..+. --|..
T Consensus 108 l~~~~~d~l~v~~~~-~~e~----q~~i~~~~~~~~~~~i~LvVVDSvaa~~r---~~~~~-d-------~~~~~~~r~l 171 (279)
T COG0468 108 LGVDLLDNLLVSQPD-TGEQ----QLEIAEKLARSGAEKIDLLVVDSVAALVR---AEEIE-D-------GHLGLRARLL 171 (279)
T ss_pred HHHHHHCCEEEECCC-CHHH----HHHHHHHHHHHCCCCCCEEEEECCCCCCH---HHHCC-C-------CHHHHHHHHH
T ss_conf 887542153686689-7799----99999999875468878899825743463---65548-5-------3489999999
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 99999999819876753899956589
Q gi|254780725|r 315 KNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 315 ~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
.+.+..+........-..++.||+..
T Consensus 172 s~~l~~L~~~a~~~~~~vi~~NQv~~ 197 (279)
T COG0468 172 SKALRKLTRLANKYNTAVIFTNQVRA 197 (279)
T ss_pred HHHHHHHHHHHHHCCCEEEEECCEEE
T ss_conf 99999999999974958999784034
No 182
>KOG1532 consensus
Probab=97.43 E-value=0.0025 Score=39.68 Aligned_cols=181 Identities=16% Similarity=0.191 Sum_probs=96.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987898886318456124337653
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~ 236 (427)
..+.-.+|.|+| --|.||||+..-|-.++.. .+.+.-+|.||+.--.+..-.|++- .|.+ -.+..
T Consensus 15 ~~~~p~~ilVvG-MAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDI----RDtV---------kYkEv 79 (366)
T KOG1532 15 AIQRPVIILVVG-MAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDI----RDTV---------KYKEV 79 (366)
T ss_pred CCCCCCEEEEEE-CCCCCCHHHHHHHHHHHHH-CCCCCEEEECCHHHHCCCCCCCCCH----HHHH---------HHHHH
T ss_conf 556870799994-4778841399999999862-3699808867888854888667756----6543---------09999
Q ss_pred HHCCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH--H------HHHHHHHCC-CC--CCC
Q ss_conf 20248--98068724876120320799999998999851288899738888898--9------999986201-25--435
Q gi|254780725|r 237 PVFYA--ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS--W------TQEVLTLSD-KV--VIT 303 (427)
Q Consensus 237 l~~~~--~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~--~------~~~~L~~AD-~v--viV 303 (427)
|.++. ++=.++.+ -......-+.+..+++.....++||+||+|.+... | ....|..+- .| ++|
T Consensus 80 MkqY~LGPNGgI~Ts----LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~Yvv 155 (366)
T KOG1532 80 MKQYQLGPNGGIVTS----LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVV 155 (366)
T ss_pred HHHHCCCCCCCHHHH----HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCHHHHHHHCCCEEEEEEE
T ss_conf 998388998640335----8999987899999999742204779974888068998427850158667613985999994
Q ss_pred CCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC--CHHHH---HHHHHHHC
Q ss_conf 7877688-999999999999819876753899956589875--20059---99999848
Q gi|254780725|r 304 TSLDLAG-LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK--PEISI---SDFCAPLG 356 (427)
Q Consensus 304 ~~p~~~s-lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~--~~i~~---~~~~~~lg 356 (427)
-+|...+ ..=..+++-.+.-+-...-+..+|+|+.+..+. ..-.. +.|.+++.
T Consensus 156 Dt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~ 214 (366)
T KOG1532 156 DTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALN 214 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 47767884169988999999998626876999714344561889999999999999997
No 183
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.37 E-value=0.00047 Score=44.11 Aligned_cols=186 Identities=13% Similarity=0.158 Sum_probs=98.0
Q ss_pred CCCHHHHHHHHHCCCCEEEC----CCCC-HHHHHHHHHHCCCCCCCC-CCCCCEEEEEEECCCCCCHHHHHHHHHHHHH-
Q ss_conf 87189999999765626431----8999-899999763102332223-4567537999746988775689999999999-
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYLI----EPLS-VADIINSISAIFTPQEEG-KGSSGCSISFIGSRGGVGSSTIAHNCAFSIA- 187 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl~----~P~~-~~~l~~ai~~~~~~~~~~-~~~~grvIav~g~KGGvGkTTiA~nLA~~LA- 187 (427)
..-..++++++++|++--+. .... ...+...+..+.....+. -...+++|+++| --||||||.-+-|||...
T Consensus 151 ~~~~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVG-PTGVGKTTTlAKLAar~~~ 229 (407)
T COG1419 151 PTRLNLINELLRAGLELEILDMKDESYEDLRYFSEKLRKLLLSLIENLIVEQKRVIALVG-PTGVGKTTTLAKLAARYVM 229 (407)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHH
T ss_conf 046999999999756413331322222123217999999887644111124685799989-9887588799999999975
Q ss_pred HHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHH
Q ss_conf 62699499997879898603343899878988863184561243376532024898068724876120320799999998
Q gi|254780725|r 188 SVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPV 267 (427)
Q Consensus 188 ~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~l 267 (427)
....++|.+|-+|..-=.+.-.| .+.++.+ ++.+- .-.++..+...
T Consensus 230 ~~~~~kVaiITtDtYRIGA~EQL-----k~Ya~im--------------------~vp~~---------vv~~~~el~~a 275 (407)
T COG1419 230 LKKKKKVAIITTDTYRIGAVEQL-----KTYADIM--------------------GVPLE---------VVYSPKELAEA 275 (407)
T ss_pred HCCCCCEEEEEECCCHHHHHHHH-----HHHHHHH--------------------CCCEE---------EECCHHHHHHH
T ss_conf 32576068997144115289999-----9999986--------------------99559---------96399999999
Q ss_pred HHHHHHCCCEEEECCCCCC--CHHH----HHHHHH--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 9998512888997388888--9899----999862--0125435787768899999999999981987675389995658
Q gi|254780725|r 268 LDILEQIFPLVILDVPHVW--NSWT----QEVLTL--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVK 339 (427)
Q Consensus 268 l~~l~~~yd~VIiD~p~~~--~~~~----~~~L~~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~ 339 (427)
+..++ +||+|+||+-... +... .+.+.. ...+++|...+. ..++.+.+++.++...+. .+++.+.+
T Consensus 276 i~~l~-~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlkei~~~f~~~~i~----~~I~TKlD 349 (407)
T COG1419 276 IEALR-DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKEIIKQFSLFPID----GLIFTKLD 349 (407)
T ss_pred HHHHH-CCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEECCC-CHHHHHHHHHHHCCCCCC----EEEEECCC
T ss_conf 99853-1888999689988337899999999970356621799984576-468899999972458866----16897133
Q ss_pred CC
Q ss_conf 98
Q gi|254780725|r 340 TP 341 (427)
Q Consensus 340 ~~ 341 (427)
-.
T Consensus 350 ET 351 (407)
T COG1419 350 ET 351 (407)
T ss_pred CC
T ss_conf 56
No 184
>pfam03796 DnaB_C DnaB-like helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.36 E-value=0.0072 Score=36.81 Aligned_cols=47 Identities=21% Similarity=0.232 Sum_probs=37.0
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 675379997469887756899999999996269949999787989860
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
+.|. +.++++.-|+|||+++.|+|..+|.+.|.+|+++.+......+
T Consensus 17 ~~G~-l~vi~g~pg~GKS~~~~~~a~~~a~~~g~~Vl~~slEm~~~~~ 63 (186)
T pfam03796 17 QKGD-LIIIAARPSMGKTAFALNIARNAALKQDKPVLFFSLEMSAEQL 63 (186)
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 8881-7999967999879999999999999709966875475529999
No 185
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=97.29 E-value=0.0063 Score=37.18 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=82.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC-CCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 799974698877568999999999962699499997879898-6033438998789888631845612433765320248
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG-TANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g-~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
||.+.| -+|+||||+.-.|...+.+ .+++|.++=-|+... +-...|| |.+ |.... ...
T Consensus 1 viGitG-~pGaGKStLi~~l~~~~~~-~g~~VaVlavDPsS~~sgGalLG--------DRi----Rm~~~-------~~~ 59 (148)
T cd03114 1 VIGITG-VPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILG--------DRI----RMERH-------ASD 59 (148)
T ss_pred CEEECC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCCCCCCHH--------HHH----HHHHH-------CCC
T ss_conf 976258-9978789999999999997-89837999968887866862032--------354----53441-------579
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9806872487612032079999999899985-128889973888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
++.++-+.+..-. ...+ .......+..+. ..||+|+|.+-. .+.........+|.+++|..|..-.--..+
T Consensus 60 ~~vfiRs~atrg~-~ggl-a~~~~~~i~~l~~~g~D~IiIETvG-vGQse~~i~~~aD~~i~v~~p~~GD~iQ~~----- 131 (148)
T cd03114 60 PGVFIRSLATRGF-LGGL-SRATPEVIRVLDAAGFDVIIVETVG-VGQSEVDIASMADTTVVVMAPGAGDDIQAI----- 131 (148)
T ss_pred CCEEEEECCCCCC-CCCH-HHHHHHHHHHHHHCCCCEEEEECCC-CCCCHHHHHHHCCEEEEEECCCCCCHHHHC-----
T ss_conf 9836863466665-4204-6889999999997599989997487-775602655435669999636887377611-----
Q ss_pred HHHCCCCCCCCEEEEECCC
Q ss_conf 9981987675389995658
Q gi|254780725|r 321 LKKLRPADKPPYLVLNQVK 339 (427)
Q Consensus 321 l~~~~~~~~~~~iVlNr~~ 339 (427)
|. +.-...=.+|+|+.+
T Consensus 132 -K~-gi~e~aDl~vvNK~D 148 (148)
T cd03114 132 -KA-GIMEIADIVVVNKAD 148 (148)
T ss_pred -CC-CHHHCCCEEEEECCC
T ss_conf -22-852124699993789
No 186
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=97.28 E-value=0.0024 Score=39.79 Aligned_cols=67 Identities=12% Similarity=0.158 Sum_probs=49.2
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 1288899738888--898999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
..+.+.++|+|.. +...+..++..+|.+++|++.+-.-...+++++..++..+ .++.+++|+++...
T Consensus 65 ~~~~i~~iDtPGh~~f~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~---~p~iv~vNKiD~v~ 133 (185)
T pfam00009 65 KKRHINIIDTPGHVDFTKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLG---VPIIVFINKMDRVD 133 (185)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHC---CCEEEEEECCCCCC
T ss_conf 8936899989987143999999986465642999867685323099999999828---98799997732777
No 187
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.28 E-value=0.0015 Score=40.97 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH-
Q ss_conf 6753799974698877568999999999962699499997879898603343899878988863184561243376532-
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP- 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l- 237 (427)
..|-|.=++| -||+|||++|.-+|..-++ .|++|+.||--=.+ +++|+-+..-.+.+
T Consensus 10 E~G~iTQiYG-p~G~GKTn~c~~~a~~a~~-~Gk~v~YiDTEGGL--------------------S~ER~~q~~~~~~~D 67 (223)
T TIGR02237 10 ERGIITQIYG-PPGSGKTNICLILAVNAAR-QGKKVVYIDTEGGL--------------------SPERFKQIAEDRALD 67 (223)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC--------------------HHHHHHHHHHCCCCC
T ss_conf 2035889875-8998678999999999986-18958999628983--------------------289999986305889
Q ss_pred -HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC---CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf -0248980687248761203207999999989998512---888997388888989999986201254357877688999
Q gi|254780725|r 238 -VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI---FPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 238 -~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~---yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~ 313 (427)
-+..+++-+.-+ .++ .-...++......+... ++.||+|+-. ...+.-....+.- ...-.+.
T Consensus 68 ~e~~~~~~iv~~~-~~f----~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t---~~YRle~~~d~nk------~~~~~~~ 133 (223)
T TIGR02237 68 PERVLSNVIVFEV-FDF----DEQEVAIQKTSKLIDRDGDKADLVVVDSFT---ALYRLERSDDRNK------QISLNRE 133 (223)
T ss_pred HHHHHCCEEEECC-CCH----HHHHHHHHHHHHHHHCCCCEEEEEEEECCH---HHHHHCCCCCCHH------HHHHHHH
T ss_conf 8888415355235-356----789999999999986068833148881533---4542025786025------6799999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 999999999819876753899956589
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
..+=+..|-.+.-...-.-+|-||+-.
T Consensus 134 l~~Ql~~Ll~lArk~~~AVviTNQvy~ 160 (223)
T TIGR02237 134 LARQLTLLLSLARKKDLAVVITNQVYT 160 (223)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 999999999998764997899711588
No 188
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.27 E-value=0.0009 Score=42.37 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=59.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC-CCCCCCCHHHHHCCCCCHHHHHHHHHH---H
Q ss_conf 799974698877568999999999962699499997879898603343-899878988863184561243376532---0
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF-DKDPINSISDAIYPVGRIDKAFVSRLP---V 238 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l-~~~~~~~l~d~l~~~~rlD~~~l~~~l---~ 238 (427)
-..|++++-|+|||++|.|+|...|...|.+|++.-+....-.+..-+ -....-....+ ..+ ++...-+++.. .
T Consensus 195 ~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i-~~g-~l~~~~~~~~~~a~~ 272 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNI-RTG-RFNDSDFNRLLNAVD 272 (421)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHH-HCC-CCCHHHHHHHHHHHH
T ss_conf 689998546787459999999999986698389992579999999999998548977666-528-999899999999999
Q ss_pred CCC-CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC---CCEEEECC
Q ss_conf 248-980687248761203207999999989998512---88899738
Q gi|254780725|r 239 FYA-ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI---FPLVILDV 282 (427)
Q Consensus 239 ~~~-~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~---yd~VIiD~ 282 (427)
... ..|++ +....++...++..+..++.. -++||||.
T Consensus 273 ~l~~~~l~i-------~d~~~~ti~~ir~~~r~~~~~~~~l~livIDY 313 (421)
T TIGR03600 273 RLSEKDLYI-------DDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred HHHCCCEEE-------ECCCCCCHHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 861687899-------66998876789999999998628986999757
No 189
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.14 E-value=0.005 Score=37.80 Aligned_cols=47 Identities=23% Similarity=0.311 Sum_probs=37.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 675379997469887756899999999996269949999787989860
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
+.| -+.++++.-|+||||++.|+|+.+|.+.|.+|+++=+......+
T Consensus 11 ~~G-~L~vi~a~~g~GKS~~~~~la~~~a~~~g~~V~~~SlEm~~~~~ 57 (242)
T cd00984 11 QPG-DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQL 57 (242)
T ss_pred CCC-CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 998-18999968999999999999999999779959999333538899
No 190
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.12 E-value=0.0032 Score=38.98 Aligned_cols=46 Identities=17% Similarity=0.276 Sum_probs=36.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC
Q ss_conf 67537999746988775689999999999626994999978798986
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGT 205 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~ 205 (427)
+.|. +.|+++.-|+|||+++.++|..++.+.|.+|+++-+......
T Consensus 28 ~~Ge-L~viaarpg~GKT~f~~~~a~~~~~~~g~~vl~~SlEm~~~~ 73 (271)
T cd01122 28 RKGE-LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPVVR 73 (271)
T ss_pred CCCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHH
T ss_conf 9980-899996899869999999999999976990899970499999
No 191
>PRK08082 consensus
Probab=97.11 E-value=0.0043 Score=38.21 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=36.5
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|. ..|++++-|+|||++|.|+|+.+|.+.+.+|++.-+......+
T Consensus 202 ~g~-LiviaaRPsmGKTa~alnia~~~a~~~~~~V~~fSlEM~~~~l 247 (453)
T PRK08082 202 RND-LIIVAARPSVGKTAFALNIAQNVATKTDENVAIFSLEMGADQL 247 (453)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 585-7999867887578999999999998559948997313898999
No 192
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.11 E-value=0.0031 Score=39.04 Aligned_cols=111 Identities=17% Similarity=0.187 Sum_probs=51.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC-CCCCCHHHCCCC-CCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 799974698877568999999999962699499997879-898603343899-878988863184561243376532024
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL-PYGTANINFDKD-PINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl-~~g~~~~~l~~~-~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
.++++-+.||+|||+++..+|.++|. |.+.+-..... ..|. -+|+..+ +...+.. |+....-.......
T Consensus 2 ~v~~l~g~gG~GKS~lal~lAl~vA~--G~~~~g~~~~~~~~G~-Vly~~~Ed~~~~l~r------Rl~a~~~~~~~~~~ 72 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAMAL--GKNLFGGGLKVTEPGR-VVYLSAEDPREEIHR------RLEAILQHLEPDDA 72 (239)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHC--CCCCCCCCCCCCCCCE-EEEEECCCCHHHHHH------HHHHHHHHCCCCCC
T ss_conf 38999808998889999999999975--9965689854687761-999978899899999------99999986386655
Q ss_pred CCCEEEEECCCCC----CCHHCCCHHHHHHHHHHHH-HCCCEEEECC
Q ss_conf 8980687248761----2032079999999899985-1288899738
Q gi|254780725|r 241 AENLSILTAPAML----SRTYDFDEKMIVPVLDILE-QIFPLVILDV 282 (427)
Q Consensus 241 ~~gL~lL~a~~~~----~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~ 282 (427)
..++.+.+....+ ..........+..+++.+. ..++.||||+
T Consensus 73 ~~rl~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~LVViDp 119 (239)
T cd01125 73 GDRLFIDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVIDP 119 (239)
T ss_pred CCCEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECC
T ss_conf 54166415566644133577210148999999997458998999838
No 193
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.11 E-value=0.0038 Score=38.54 Aligned_cols=77 Identities=18% Similarity=0.335 Sum_probs=54.0
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHH
Q ss_conf 288899738888--8989999986201254357877688999999999999819876753899956589875-2005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~ 350 (427)
.+-+-++|+|.. +.......+..+|..++|+...-.-.-++++.+....+.+. ++.+++|+++.+.. .+...++
T Consensus 64 ~~~~n~IDtPGH~dF~~~~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~---~~iv~iNK~D~~~a~~~~v~~e 140 (194)
T cd01891 64 DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGL---KPIVVINKIDRPDARPEEVVDE 140 (194)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHHHH
T ss_conf 9889999899847777789877643446789865378975899999999987299---7499885645898889999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780725|r 351 FCA 353 (427)
Q Consensus 351 ~~~ 353 (427)
+.+
T Consensus 141 i~~ 143 (194)
T cd01891 141 VFD 143 (194)
T ss_pred HHH
T ss_conf 999
No 194
>PRK05595 replicative DNA helicase; Provisional
Probab=97.10 E-value=0.0015 Score=40.96 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=36.4
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|.. .|++++-|+|||++|.|+|...|...|.+|++.-+......+
T Consensus 200 ~GdL-iiiaaRP~mGKTa~alnia~~~a~~~g~~V~~fSlEMs~~ql 245 (444)
T PRK05595 200 KGDM-ILIAARPSMGKTTFALNIAEYAALREGKSVVIFSLEMSKEQL 245 (444)
T ss_pred CCCE-EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 5777-999857989807999999999998669937999588999999
No 195
>PRK06749 replicative DNA helicase; Provisional
Probab=97.07 E-value=0.0033 Score=38.92 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.2
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 79997469887756899999999996269949999787989
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-..|++++-|+|||++|.|+|...|+ .|.+|++.-+....
T Consensus 187 ~LiviaaRPsmGKTa~alnia~~~a~-~g~~v~~fSlEMs~ 226 (428)
T PRK06749 187 DFVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSS 226 (428)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCH
T ss_conf 68999627989768999999999996-49927998378999
No 196
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.06 E-value=0.011 Score=35.64 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.7
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH-----CCCCEEEEECCCCCC
Q ss_conf 456753799974698877568999999999962-----699499997879898
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV-----FAMETLLADLDLPYG 204 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~-----~~~~VlLvDlDl~~g 204 (427)
.-+.|+++-++| ..|+|||+++.++|...... .+.+|+.||..-.|.
T Consensus 15 Gip~G~ItEi~G-~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyIDtE~~f~ 66 (226)
T cd01393 15 GIPTGRITEIFG-EFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFR 66 (226)
T ss_pred CCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCC
T ss_conf 988883999999-9999899999999999854221169996199995577531
No 197
>PRK05636 replicative DNA helicase; Provisional
Probab=97.03 E-value=0.0034 Score=38.80 Aligned_cols=115 Identities=17% Similarity=0.237 Sum_probs=59.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 7537999746988775689999999999626994999978798986033-438998789888631845612433765320
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
.|. ..|++++-|+|||++|.|+|...|...+.+|++.-+....-.+.. ++-....-.+..+- ..++++.-++++..
T Consensus 266 ~G~-LiIiAARPsmGKTalAlnia~n~A~~~g~~v~~fSLEMs~~ql~~Rlla~~s~V~~~~ir--~g~l~~~~~~~l~~ 342 (507)
T PRK05636 266 GGQ-MIIVAARPGVGKSTIALDFMRSASIKNNKASVIFSLEMSKSEIVMRLLSAEAEVRLADMR--GGKMDEDAWEKLVQ 342 (507)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHCCCCHHHHH--CCCCCHHHHHHHHH
T ss_conf 356-799973787866899999999999876993799715699899999999984798878885--58878899999999
Q ss_pred CCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC--CCEEEECC
Q ss_conf 248--980687248761203207999999989998512--88899738
Q gi|254780725|r 239 FYA--ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI--FPLVILDV 282 (427)
Q Consensus 239 ~~~--~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~--yd~VIiD~ 282 (427)
... ..+.+ -.+....++...+..-...+++. .++||||.
T Consensus 343 a~~~l~~~pl-----~IdD~~~lti~~Ira~aRrlk~~~~l~livVDY 385 (507)
T PRK05636 343 RLGKIAQAPI-----FIDDSANLTMMEIRSKARRLKQKHDLKMIVVDY 385 (507)
T ss_pred HHHHHHHCCE-----EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEH
T ss_conf 9999861988-----998499976999999999998617999899845
No 198
>PRK07263 consensus
Probab=97.02 E-value=0.0025 Score=39.65 Aligned_cols=46 Identities=13% Similarity=0.161 Sum_probs=36.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|.. .|++++-|+|||++|.|+|...|...+.+|++.-+......+
T Consensus 202 ~GdL-iviaaRPsmGKTa~alnia~~iA~~~~~~V~~fSlEMs~~ql 247 (453)
T PRK07263 202 PDQL-IILAARPAVGKTAFVLNIAQNVGTKQKKTVAIFSLEMGAESL 247 (453)
T ss_pred CCCE-EEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 7868-999727888478999999999998559828999246998999
No 199
>PRK05748 replicative DNA helicase; Provisional
Probab=97.01 E-value=0.0024 Score=39.72 Aligned_cols=46 Identities=17% Similarity=0.235 Sum_probs=36.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|. ..|++++-|+|||++|.|+|...|...+.+|++.-+......+
T Consensus 202 ~g~-LiviaaRP~mGKTa~alnia~~~a~~~~~~v~~fSlEM~~~~l 247 (448)
T PRK05748 202 PND-LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAESL 247 (448)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHH
T ss_conf 673-7999847998768999999999998569808998177888899
No 200
>PRK09191 two-component response regulator; Provisional
Probab=96.97 E-value=0.013 Score=35.23 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=62.9
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCC
Q ss_conf 306998999999861899849999805987-6778899988853289980899816871899999997656264318999
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDS-REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLS 138 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~-~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~ 138 (427)
-...+..+|++..... .|+++++|++..+ .++++...++.+. -++|||-|+...|--+-.+-.+ .+. ++.||++
T Consensus 166 GiA~t~~eAl~la~~~-~PDlvL~DI~L~d~~sGIdaa~~I~~~--~~iPvIFiTAyperlltg~~~e-p~~-li~KPf~ 240 (261)
T PRK09191 166 GIARTRAEAVALAKKT-RPGLILADIQLADGSSGIDAVNDILKT--FDVPVIFITAFPERLLTGERPE-PAF-LITKPFQ 240 (261)
T ss_pred EEECCHHHHHHHHHCC-CCCEEEEEEECCCCCCHHHHHHHHHHH--CCCCEEEECCCHHHHCCCCCCC-CCE-EECCCCC
T ss_conf 7627899999997425-989899953479998799999999982--8999899777846530278888-740-3569898
Q ss_pred HHHHHHHHHHC
Q ss_conf 89999976310
Q gi|254780725|r 139 VADIINSISAI 149 (427)
Q Consensus 139 ~~~l~~ai~~~ 149 (427)
++.+..+++..
T Consensus 241 ~~~v~aai~qA 251 (261)
T PRK09191 241 PDTVKAAISQA 251 (261)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999999
No 201
>PRK13351 elongation factor G; Reviewed
Probab=96.90 E-value=0.033 Score=32.77 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 99999998999851288
Q gi|254780725|r 260 DEKMIVPVLDILEQIFP 276 (427)
Q Consensus 260 ~~~~l~~ll~~l~~~yd 276 (427)
.+-+++.+++.|++.|.
T Consensus 451 GElHLe~~l~~L~~~f~ 467 (687)
T PRK13351 451 GELHLEIALERLRREFK 467 (687)
T ss_pred CHHHHHHHHHHHHHHHC
T ss_conf 89999999998888719
No 202
>PRK07004 replicative DNA helicase; Provisional
Probab=96.89 E-value=0.004 Score=38.36 Aligned_cols=44 Identities=11% Similarity=0.283 Sum_probs=35.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 79997469887756899999999996269949999787989860
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
-..|++++-|+|||++|.|+|...|.+.|.+|++.-+....-.+
T Consensus 214 dLiIIAARPsmGKTafAlniA~n~A~~~g~~V~~FSLEMs~eql 257 (460)
T PRK07004 214 ELIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGTQL 257 (460)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 57999736876426999999999987258866998477999999
No 203
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=96.88 E-value=0.0052 Score=37.68 Aligned_cols=81 Identities=14% Similarity=0.170 Sum_probs=58.1
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC--CHHHHH
Q ss_conf 28889973888889--89999986201254357877688999999999999819876753899956589875--200599
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK--PEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~--~~i~~~ 349 (427)
.+.+.++|+|.... ..+..++..+|.+++|+...-.--..+++.+..++..+ .++.+++|+++.... .+...+
T Consensus 61 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~---~p~iv~iNKiD~~~~~~~~~~~~ 137 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGG---LPIIVAINKIDRVGEEDLEEVLR 137 (189)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECCCCCCHHHHHHHHH
T ss_conf 989999969981889999999986468569999879899878999999999769---98799998971877562999999
Q ss_pred HHHHHHCC
Q ss_conf 99998489
Q gi|254780725|r 350 DFCAPLGI 357 (427)
Q Consensus 350 ~~~~~lg~ 357 (427)
++.+.++.
T Consensus 138 ei~~~l~~ 145 (189)
T cd00881 138 EIKELLGL 145 (189)
T ss_pred HHHHHHHH
T ss_conf 99999875
No 204
>PRK06696 uridine kinase; Validated
Probab=96.85 E-value=0.0048 Score=37.89 Aligned_cols=61 Identities=15% Similarity=0.117 Sum_probs=42.8
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 989999976310233222345675379997469887756899999999996269949999787989
Q gi|254780725|r 138 SVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 138 ~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
+..+++..|........++.+ -+|+|-| -.|+||||+|..|+..|.. .|.+|+.+-.|-..
T Consensus 6 ~r~~~~~~~~~~i~~~~p~rp---l~VgIdG-~~gSGKTTlA~~La~~L~~-~G~~V~~v~~Ddf~ 66 (227)
T PRK06696 6 NRKQVVKEIANHILTLNLTRP---LRVAIDG-ITASGKTTFANELAEEIKK-RGRPVIRASIDDFH 66 (227)
T ss_pred CHHHHHHHHHHHHHHCCCCCC---EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCCCCC
T ss_conf 287899999999983599986---8999778-9987879999999999974-69948997154434
No 205
>pfam00154 RecA recA bacterial DNA recombination protein. RecA is a DNA-dependent ATPase and functions in DNA repair systems. RecA protein catalyses an ATP-dependent DNA strand-exchange reaction that is the central step in the repair of dsDNA breaks by homologous recombination.
Probab=96.85 E-value=0.036 Score=32.50 Aligned_cols=45 Identities=18% Similarity=0.149 Sum_probs=36.1
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 45675379997469887756899999999996269949999787989
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.-+.||++.++| .-++||||+|.++... ++..|..++.+|....+
T Consensus 48 GlP~GRi~ei~G-~essGKTtlal~~ia~-aQk~gg~~~~iD~E~a~ 92 (322)
T pfam00154 48 GLPKGRIIEIYG-PESSGKTTLALHAIAE-AQKAGGTAAFIDAEHAL 92 (322)
T ss_pred CCCCCEEEEEEC-CCCCCHHHHHHHHHHH-HHHCCCEEEEEEHHHHC
T ss_conf 977870899988-9877789999999999-97349938998536605
No 206
>PRK08760 replicative DNA helicase; Provisional
Probab=96.84 E-value=0.0061 Score=37.24 Aligned_cols=46 Identities=15% Similarity=0.121 Sum_probs=36.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|. ..|++++-|+|||++|.|+|...|.+.++.|++.-+....-.+
T Consensus 228 ~G~-LiViaaRPsmGKTalalnia~~~A~~~~~~V~~fSLEMs~~ql 273 (476)
T PRK08760 228 PTD-LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSASQL 273 (476)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 777-7999877887478999999999998379978997036999999
No 207
>KOG1533 consensus
Probab=96.81 E-value=0.0019 Score=40.30 Aligned_cols=103 Identities=17% Similarity=0.154 Sum_probs=64.3
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCE
Q ss_conf 99746988775689999999999626994999978798986033438998789888631845612433765320248980
Q gi|254780725|r 165 SFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENL 244 (427)
Q Consensus 165 av~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL 244 (427)
.|+| -.|.||||-.......++. .|+++.+|.+|+...+... ++...|.+++.. +..+.++.
T Consensus 6 vVIG-PPgSGKsTYc~g~~~fls~-~gr~~~vVNLDPaNd~~~Y----~~~v~I~elit~---------edvm~~~~--- 67 (290)
T KOG1533 6 VVIG-PPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDPANDNLPY----ECAVDIRELITV---------EDVMEELG--- 67 (290)
T ss_pred EEEC-CCCCCCCCHHHHHHHHHHH-HCCCEEEEECCCCCCCCCC----CCCCCHHHHCCH---------HHHHHHHC---
T ss_conf 8876-9999853113209999997-4896279956876567888----776519997139---------99999858---
Q ss_pred EEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECCCCCCC
Q ss_conf 68724876120320799999998999851-28889973888889
Q gi|254780725|r 245 SILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDVPHVWN 287 (427)
Q Consensus 245 ~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~p~~~~ 287 (427)
+=|-+ .+--..+.-+..+.+++..++. ...|+++|+|.+..
T Consensus 68 -LGPNg-~l~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQVE 109 (290)
T KOG1533 68 -LGPNG-ALKYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQVE 109 (290)
T ss_pred -CCCCH-HHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCEE
T ss_conf -79961-2799999998544999997452347489995798279
No 208
>TIGR00455 apsK adenylylsulfate kinase; InterPro: IPR002891 Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulphate. This domain contains an ATP binding P-loop motif .; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity transferring phosphorus-containing groups, 0000103 sulfate assimilation.
Probab=96.79 E-value=0.019 Score=34.22 Aligned_cols=114 Identities=22% Similarity=0.208 Sum_probs=74.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987898886318456124337653
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~ 236 (427)
....|-||=++| =.|.||||||..|.-.|-+ .|.++-++|-|-=--.+...|| ++=.|=..+..|+-++. +.
T Consensus 15 ~~h~g~vlWlTG-LSGsGKsTiA~Al~~~L~~-~G~~~~~LDGDnvR~gL~~dLG----FS~~DR~eNIRRigEVa--~L 86 (187)
T TIGR00455 15 NKHRGVVLWLTG-LSGSGKSTIANALEKKLEK-KGYRVYVLDGDNVRHGLNKDLG----FSEEDRKENIRRIGEVA--KL 86 (187)
T ss_pred CCCCEEEEEEEC-CCCCHHHHHHHHHHHHHHH-CCCEEEEECCCEEECCCCCCCC----CCHHHHCCCCCEEHHHH--HH
T ss_conf 279738985116-8856357999999999996-6974999758634247788888----88567056883532646--77
Q ss_pred HHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 20248980687248761203207999999989998512888997388
Q gi|254780725|r 237 PVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVP 283 (427)
Q Consensus 237 l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p 283 (427)
++ ..|+=+|.+--.|.+ ...+.++.+++..--.|-=|.||||
T Consensus 87 ~~--~~G~i~ltsfISPyR---~~R~~vR~~~~~~Gl~F~Evfv~~P 128 (187)
T TIGR00455 87 LV--RNGVIVLTSFISPYR---ADRQMVRELIEEGGLEFIEVFVKCP 128 (187)
T ss_pred HH--HCCEEEEEEEECCCH---HHHHHHHHHHHCCCEEEEEEECCCC
T ss_conf 76--479389984217766---6789998875405736899721788
No 209
>PRK08840 replicative DNA helicase; Provisional
Probab=96.78 E-value=0.0044 Score=38.13 Aligned_cols=46 Identities=20% Similarity=0.236 Sum_probs=35.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|. ..|++++-|+|||++|.|+|...|...+.+|++.-+....-.+
T Consensus 216 ~G~-LiviaaRPsmGKTalalnia~n~a~~~~~~v~~fSlEMs~~ql 261 (464)
T PRK08840 216 GSD-LIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPAEQL 261 (464)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHH
T ss_conf 576-7999837987368999999999999659967997677998999
No 210
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.041 Score=32.16 Aligned_cols=147 Identities=14% Similarity=0.082 Sum_probs=76.9
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCH
Q ss_conf 89999976310233222345675379997469887756899999999996269949999787989860334389987898
Q gi|254780725|r 139 VADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSI 218 (427)
Q Consensus 139 ~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l 218 (427)
-++..+.+.+.+. .+|...-+-|.|. -|+||+|+|..+|.+|-.. + ... +...+.....+..++.+..
T Consensus 22 qe~~~~~L~~a~~-----~grl~HA~Lf~Gp-~GiGK~tlA~~~A~~ll~~-~-~~~----~~~~~~~~~~l~~~~~~p~ 89 (363)
T PRK07471 22 HAAAEAALLDAYR-----SGRLHHAWLIGGP-QGIGKATLAYRMARFLLAT-P-PPG----GDAVFPPPASLAVDPDHPV 89 (363)
T ss_pred HHHHHHHHHHHHH-----CCCCCCEEEEECC-CCCCHHHHHHHHHHHHHCC-C-CCC----CCCCCCCHHHHCCCCCCCH
T ss_conf 1999999999998-----5997645876799-9818899999999998579-9-977----7776787053125877728
Q ss_pred HHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCC---CCCHHCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCCHHH
Q ss_conf 8863184561243376532024898068724876---12032079999999899985-----128889973888889899
Q gi|254780725|r 219 SDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAM---LSRTYDFDEKMIVPVLDILE-----QIFPLVILDVPHVWNSWT 290 (427)
Q Consensus 219 ~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~---~~~~~~~~~~~l~~ll~~l~-----~~yd~VIiD~p~~~~~~~ 290 (427)
...+ .....+++.++..+.+ ......+..+.++.+.+.+. ..|-++|||-+..++...
T Consensus 90 ~r~i--------------~~~~hpdl~~i~r~~d~k~~~~~~~I~Vd~iR~l~~~~~~~p~~g~~kV~IId~ad~mn~~a 155 (363)
T PRK07471 90 ARRI--------------AAGAHGGLLTLERSWNEKGKRLRTVITVDEVRETIGFFGLTAAEGGWRVVIVDTADEMNANA 155 (363)
T ss_pred HHHH--------------HCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHCHHH
T ss_conf 9999--------------52699984667620011333212445399999999997248524896699986878738899
Q ss_pred HHHHHH------CCCCCCCCCCCHHHH
Q ss_conf 999862------012543578776889
Q gi|254780725|r 291 QEVLTL------SDKVVITTSLDLAGL 311 (427)
Q Consensus 291 ~~~L~~------AD~vviV~~p~~~sl 311 (427)
.++|.. ...+++.++.++..+
T Consensus 156 aNALLK~LEEPP~~t~fiLit~~~~~l 182 (363)
T PRK07471 156 ANALLKVLEEPPARSLLLLVSHAPARL 182 (363)
T ss_pred HHHHHHHHCCCCCCEEEEEEECCHHHC
T ss_conf 999999721589883899863997777
No 211
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.77 E-value=0.042 Score=32.12 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=36.1
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 45675379997469887756899999999996269949999787989
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.-+.||++.++| .-++||||+|.++... ++..|..++++|....+
T Consensus 51 GiP~GRivei~G-~essGKTtlal~~ia~-aQk~gg~~~~iDaE~a~ 95 (325)
T cd00983 51 GYPKGRIIEIYG-PESSGKTTLALHAIAE-AQKLGGTVAFIDAEHAL 95 (325)
T ss_pred CCCCCEEEEEEC-CCCCCHHHHHHHHHHH-HHHCCCEEEEEEHHHCC
T ss_conf 966880899988-9877799999999999-87359839999625425
No 212
>KOG0078 consensus
Probab=96.76 E-value=0.042 Score=32.08 Aligned_cols=111 Identities=14% Similarity=0.195 Sum_probs=71.2
Q ss_pred EEECCCCC--CCHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHH
Q ss_conf 99738888--89899999862012543578-7768899999999999981987675389995658987520059999998
Q gi|254780725|r 278 VILDVPHV--WNSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAP 354 (427)
Q Consensus 278 VIiD~p~~--~~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~ 354 (427)
-++|+..+ ....+......|+-+++|-. -+--|..|..++++.+++......+..+|=|+++...+
T Consensus 64 QiWDtaGQerf~ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~----------- 132 (207)
T KOG0078 64 QIWDTAGQERFRTITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEK----------- 132 (207)
T ss_pred EEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCC-----------
T ss_conf 999724305678899999865482499998452577777999999998637888748985114121013-----------
Q ss_pred HCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 489537990687999999884796189888999--8999999999998522122
Q gi|254780725|r 355 LGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTV 406 (427)
Q Consensus 355 lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~ 406 (427)
-.+|.+... .-|...|.+..|.+++. -+-++|.+||+.|..+.+.
T Consensus 133 ------R~V~~e~ge-~lA~e~G~~F~EtSAk~~~NI~eaF~~La~~i~~k~~~ 179 (207)
T KOG0078 133 ------RQVSKERGE-ALAREYGIKFFETSAKTNFNIEEAFLSLARDILQKLED 179 (207)
T ss_pred ------CCCCHHHHH-HHHHHHCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCH
T ss_conf ------335679999-99998498279713367998899999999999863662
No 213
>PRK06904 replicative DNA helicase; Validated
Probab=96.72 E-value=0.006 Score=37.32 Aligned_cols=114 Identities=13% Similarity=0.139 Sum_probs=60.0
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHH--
Q ss_conf 7537999746988775689999999999626994999978798986033-4389987898886318456124337653--
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRL-- 236 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~-- 236 (427)
.|. ..|++++-|+|||++|.|+|...|...+.+|++.-+....-.+.. ++-....-....+ .....++..-+++.
T Consensus 220 ~g~-LiViAaRPsmGKTa~alnia~n~A~~~~~~V~~fSLEM~~~~l~~R~ls~~s~v~~~~i-~~g~~l~~~e~~~~~~ 297 (472)
T PRK06904 220 PSD-LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPAEQIMMRMLASLSRVDQTKI-RTGQNLDQQDWAKISS 297 (472)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHCCCCHHHH-HCCCCCHHHHHHHHHH
T ss_conf 575-79997379875689999999999995599579977879999999999998649998886-4688560999999999
Q ss_pred -HHCCC--CCEEEEECCCCCCCHHCCCHHHHHHHHHHH-HH--CCCEEEECC
Q ss_conf -20248--980687248761203207999999989998-51--288899738
Q gi|254780725|r 237 -PVFYA--ENLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQ--IFPLVILDV 282 (427)
Q Consensus 237 -l~~~~--~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~--~yd~VIiD~ 282 (427)
..... +++++- ....++...+..-...+ +. .-++||||.
T Consensus 298 ~~~~l~~~~~l~id-------d~~~~t~~~i~~~~r~~~~~~~~l~~vvIDY 342 (472)
T PRK06904 298 TVGMFKQKPNLYID-------DSSGLTPTELRSRARRVYRENGGLSLIMVDY 342 (472)
T ss_pred HHHHHHCCCCEEEE-------CCCCCCHHHHHHHHHHHHHHCCCCCEEEEEH
T ss_conf 99998468981684-------6999999999999999998738997899638
No 214
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.69 E-value=0.017 Score=34.46 Aligned_cols=66 Identities=18% Similarity=0.256 Sum_probs=50.8
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 1288899738888--89899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
..|-+-+||+|.. +......++..+|-+++|+...-.-.-++++.++...+.+. ++.+++|+.+..
T Consensus 71 ~~~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l---~~il~iNKiDRl 138 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERV---KPVLVINKIDRL 138 (222)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCCC
T ss_conf 86389997288569899999999985681799610457857789999999998599---979999890365
No 215
>TIGR01425 SRP54_euk signal recognition particle protein SRP54; InterPro: IPR006325 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes , . SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor . In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. This entry represents the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species.; GO: 0005525 GTP binding, 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle.
Probab=96.62 E-value=0.014 Score=35.08 Aligned_cols=172 Identities=15% Similarity=0.164 Sum_probs=92.8
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
..||-|+|- =|.||||..+=||++.- ++|.+++||=+|.--..+---|.++ ..+.-+.-+
T Consensus 121 ~~ViMfVGL-QGaGKTTtctKLA~YYk-~rGfK~~lvCADTFRAGAFdQLkqN------------------A~kA~iPFY 180 (453)
T TIGR01425 121 SSVIMFVGL-QGAGKTTTCTKLAYYYK-RRGFKPALVCADTFRAGAFDQLKQN------------------ATKAKIPFY 180 (453)
T ss_pred CEEEEEEEC-CCCCHHHHHHHHHHHHH-CCCCCEEEECCCCCCCCHHHHHHHH------------------HHHCCCCCC
T ss_conf 215888621-48871566878777763-2664325651775423248999874------------------764489712
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCH---HHHHHHH-----HCCCCCCCCCCCHH--H
Q ss_conf 898068724876120320799999998999851288899738888898---9999986-----20125435787768--8
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNS---WTQEVLT-----LSDKVVITTSLDLA--G 310 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~---~~~~~L~-----~AD~vviV~~p~~~--s 310 (427)
++ +. +.+|-. +- ++-+-..=++.||.|||||..+.-. ...+... .-|.++.|.+.+.- +
T Consensus 181 Gs--y~---E~DPVk---iA---~EGv~~Fk~E~~diIivDTSGRHkQe~~LF~Em~qv~~Ai~Pd~iifVMDGsIGQAA 249 (453)
T TIGR01425 181 GS--YL---ESDPVK---IA---SEGVEKFKKEKFDIIIVDTSGRHKQEEELFEEMVQVAEAIKPDSIIFVMDGSIGQAA 249 (453)
T ss_pred CC--CC---CCCCEE---EE---CCCHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHH
T ss_conf 01--04---898707---80---020113221278479983798732258888998768633499836998066166788
Q ss_pred HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEE---------EECCCHHHHH
Q ss_conf 999999999999819876753899956589875200599999984895379---------9068799999
Q gi|254780725|r 311 LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSA---------IIPFDGAVFG 371 (427)
Q Consensus 311 lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~---------~IP~D~~~~~ 371 (427)
-..|+. ++.. ..--.+|+.+.+-...+-=....++ +-..|+.. .=+||++.|-
T Consensus 250 ~~QAkA----FK~~---~~vGSvIiTKLDGHAkGGGALSAVA-ATKsPiiFIGTGEhv~d~E~F~~~~Fv 311 (453)
T TIGR01425 250 FSQAKA----FKDS---VEVGSVIITKLDGHAKGGGALSAVA-ATKSPIIFIGTGEHVDDFEIFDAEPFV 311 (453)
T ss_pred HHHHHH----HHHC---CCCEEEEEECCCCCCCCCHHHHHHH-HHCCCEEEECCCCCCCCCCCCCCCCHH
T ss_conf 999998----6300---3500388751567767623788987-535977981377502760578997147
No 216
>TIGR00347 bioD dethiobiotin synthase; InterPro: IPR004472 The enzyme is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP and requires magnesium as a co-factor. The Thr residue at position seven of the seed alignment is necessary for the binding of ATP.; GO: 0004141 dethiobiotin synthase activity, 0005524 ATP binding, 0009102 biotin biosynthetic process.
Probab=96.61 E-value=0.0073 Score=36.78 Aligned_cols=161 Identities=13% Similarity=0.142 Sum_probs=86.5
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC--HHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 97469887756899999999996269949999787989860--3343899878988863184561243376532024898
Q gi|254780725|r 166 FIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA--NINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 166 v~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~--~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|.|.-=|||||.++.+||..|-+ .|.+|.+.=.= +.|.- .-.|-.+....+-+......++|+ -+.-.+
T Consensus 2 vTGtDT~VGKT~~ss~La~~lk~-~G~~~g~~Kpv-~tG~~~~~~dL~~~D~~~L~~~~~~~~~~~~-----Pi~~~P-- 72 (187)
T TIGR00347 2 VTGTDTGVGKTVVSSALAKKLKK-AGYSVGYYKPV-QTGIEETAEDLRNEDTELLQNISGTALDLDG-----PIEVNP-- 72 (187)
T ss_pred CEEEECCCCHHHHHHHHHHHHHH-CCCCEEEECCH-HCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC-----CEEECC--
T ss_conf 10224586178998999999997-59852511200-0157667763105679999876544321389-----844266--
Q ss_pred EEEEECCCCCC-----CHHCCCHHHHHHHHH----HHHHCCCEEEECCCCCC-CHHHHHHHHHCC-------------CC
Q ss_conf 06872487612-----032079999999899----98512888997388888-989999986201-------------25
Q gi|254780725|r 244 LSILTAPAMLS-----RTYDFDEKMIVPVLD----ILEQIFPLVILDVPHVW-NSWTQEVLTLSD-------------KV 300 (427)
Q Consensus 244 L~lL~a~~~~~-----~~~~~~~~~l~~ll~----~l~~~yd~VIiD~p~~~-~~~~~~~L~~AD-------------~v 300 (427)
..|..|..|. +.-.+..+.+..-+. .+++.|||+||--..+| .+..++-...|| .+
T Consensus 73 -~~F~~PlsP~~A~~~Eg~~i~~~~~~~~~~naye~l~~~~d~~lVEGAGG~~vP~~r~~~t~~D~i~~~ietsGh~L~~ 151 (187)
T TIGR00347 73 -YAFALPLSPHIAAKQEGRPIDLEELSKHLRNAYEELEEKYDFVLVEGAGGLCVPITREEYTVADLIKLLIETSGHQLPV 151 (187)
T ss_pred -CCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEE
T ss_conf -3205688625888617783268889878878999999717917998336242666612457999999998505882027
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEE
Q ss_conf 435787768899999999999981987675389995
Q gi|254780725|r 301 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336 (427)
Q Consensus 301 viV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlN 336 (427)
++|+.+.+-++-.+---.+.+++.+....-..+|+|
T Consensus 152 ilV~r~~LGtiNHt~Lt~~~~~~~Gl~shl~G~i~N 187 (187)
T TIGR00347 152 ILVVRVKLGTINHTLLTVEAARQTGLKSHLAGVILN 187 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEEEC
T ss_conf 987468646067999999999977994443545619
No 217
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.036 Score=32.53 Aligned_cols=82 Identities=24% Similarity=0.257 Sum_probs=50.4
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 75379997469887756899999999996269949999787989860334389987898886318456124337653202
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
.|-+|=++| -.|.||||+|-.|...|.. .+.++.++|.|--- ..|+.+..++..|-..+..|+.. +-..+..
T Consensus 3 kg~viWltG-lsgSGKTTia~~l~~~L~~-~~~~~~~LDGD~lR----~~l~~~lgfs~~dR~~n~~r~~~--la~~l~~ 74 (175)
T PRK00889 3 RGVTVWFTG-LSGAGKTTISHALAEKLRA-RGYPVEVLDGDIVR----TNLSKGLGFSKEDRDTNIRRIGF--VAHLLTR 74 (175)
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHH----HHHCCCCCCCHHHHHHHHHHHHH--HHHHHHH
T ss_conf 888999889-8999999999999999998-69967997768888----75367889898999999999999--9999981
Q ss_pred CCCCEEEEECCC
Q ss_conf 489806872487
Q gi|254780725|r 240 YAENLSILTAPA 251 (427)
Q Consensus 240 ~~~gL~lL~a~~ 251 (427)
.|+.++.+.-
T Consensus 75 --~g~~vIvs~i 84 (175)
T PRK00889 75 --HGVIVLVSAI 84 (175)
T ss_pred --CCCEEEEEEC
T ss_conf --8986888504
No 218
>PRK08506 replicative DNA helicase; Provisional
Probab=96.58 E-value=0.0083 Score=36.42 Aligned_cols=42 Identities=19% Similarity=0.331 Sum_probs=33.7
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 75379997469887756899999999996269949999787989
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.|. ..|++++-|+|||++|.|+|...+. .+.+|++.-|....
T Consensus 192 ~gd-LiIIAARPsmGKTAfAlniA~~~a~-~~~~V~~FSLEMs~ 233 (473)
T PRK08506 192 KGD-LIIIAARPSMGKTTLVLNMVLKALN-QGKGVAFFSLEMPA 233 (473)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCH
T ss_conf 562-7999507998678999999999996-59965898224799
No 219
>PRK08694 consensus
Probab=96.58 E-value=0.0059 Score=37.33 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 753799974698877568999999999962699499997879898
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG 204 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g 204 (427)
.|. ..|++++-|+|||++|.|+|+..|.+.+.+|++.-+....-
T Consensus 217 ~G~-LiVIaaRPsmGKTalalnia~~~a~~~~~~V~~fSLEMs~~ 260 (468)
T PRK08694 217 PGD-LIIVAGRPSMGKTAFSINIAEHVAVEGKLPVAVFSMEMGGA 260 (468)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCHH
T ss_conf 784-79996178653789999999999984798479977889999
No 220
>PRK08006 replicative DNA helicase; Provisional
Probab=96.56 E-value=0.0075 Score=36.69 Aligned_cols=46 Identities=20% Similarity=0.260 Sum_probs=35.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|. ..|++++-|+|||++|.|+|...|...+.+|++.-+....-.+
T Consensus 223 ~G~-LiviaaRPsmGKTalalnia~~~a~~~~~~V~~fSlEMs~~ql 268 (471)
T PRK08006 223 PSD-LIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPGEQI 268 (471)
T ss_pred CCC-EEEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHH
T ss_conf 173-8999946998769999999999998669957998167999999
No 221
>PRK06321 replicative DNA helicase; Provisional
Probab=96.56 E-value=0.01 Score=35.85 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 79997469887756899999999996269949999787989
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-..|++++-|+|||++|.|+|+..|...+.+|++.-+....
T Consensus 227 dliviaaRPsmGKTalalnia~~~a~~~~~~v~~fSLEMs~ 267 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTV 267 (472)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCH
T ss_conf 57998538999779999999999998569946997577999
No 222
>PRK09165 replicative DNA helicase; Provisional
Probab=96.54 E-value=0.0099 Score=35.94 Aligned_cols=40 Identities=20% Similarity=0.314 Sum_probs=30.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHH--------------CCCCEEEEECCCC
Q ss_conf 799974698877568999999999962--------------6994999978798
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASV--------------FAMETLLADLDLP 202 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~--------------~~~~VlLvDlDl~ 202 (427)
-..|++++-|+|||++|.|+|...|+. .|.+|++.-+...
T Consensus 206 dLiIIAARPsmGKTafaLniA~n~A~~~~~~~~~~~~~~~~~g~~V~~FSLEMs 259 (484)
T PRK09165 206 DLIILAGRPSMGKTALATNIAFNAAKAYLREAQPDGSKKAVNGGVVGFFSLEMS 259 (484)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC
T ss_conf 379996079997789999999999987410222233211368984899947799
No 223
>pfam01583 APS_kinase Adenylylsulphate kinase. Enzyme that catalyses the phosphorylation of adenylylsulphate to 3'-phosphoadenylylsulfate. This domain contains an ATP binding P-loop motif.
Probab=96.51 E-value=0.038 Score=32.39 Aligned_cols=58 Identities=28% Similarity=0.302 Sum_probs=41.6
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCC
Q ss_conf 5379997469887756899999999996269949999787989860334389987898886318
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYP 224 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~ 224 (427)
|.||=|+| -.|+||||+|..|...|.. .+.+|.++|.|---. .|+.+..++..+-..+
T Consensus 2 G~viW~TG-LsGsGKTTlA~~l~~~L~~-~~~~~~~LDGD~~R~----~l~~dlgys~~~R~~n 59 (157)
T pfam01583 2 GCTVWFTG-LSGSGKSTIANALERKLFA-QGISVYVLDGDNVRH----GLNKDLGFSEEDRTEN 59 (157)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHC----CCCCCCCCCHHHHHHH
T ss_conf 88999889-8999999999999999997-599779976887750----1257779898999999
No 224
>PRK09354 recA recombinase A; Provisional
Probab=96.51 E-value=0.063 Score=31.03 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=36.0
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 45675379997469887756899999999996269949999787989
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.-+.||+|-++| .-+.||||+|.+.... ++..|.-++.+|....+
T Consensus 56 G~P~GRivEi~G-~esSGKTtlal~~iae-aQk~Gg~~a~iDaE~al 100 (350)
T PRK09354 56 GLPKGRIVEIYG-PESSGKTTLALHAIAE-AQKAGGTAAFIDAEHAL 100 (350)
T ss_pred CCCCCCEEEEEC-CCCCCHHHHHHHHHHH-HHHCCCCEEEEEECCCC
T ss_conf 967870899988-9877799999999999-99759947999600027
No 225
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.48 E-value=0.022 Score=33.87 Aligned_cols=41 Identities=17% Similarity=0.335 Sum_probs=27.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
..|..|+++| +-|+||||+.--+.-.+.-. ..++.+=+.|+
T Consensus 45 ~~Ge~vaIvG-~sGsGKSTL~~ll~gl~~p~-~G~I~idg~di 85 (257)
T cd03288 45 KPGQKVGICG-RTGSGKSSLSLAFFRMVDIF-DGKIVIDGIDI 85 (257)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHCCCCC-CCEEEECCEEH
T ss_conf 7999999999-99981999999996056678-88899998996
No 226
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.42 E-value=0.041 Score=32.15 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 56753799974698877568999999999962699499997879898603343899878988863184561243376532
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
...|.+|=++| =.|+||||+|..|...|-. .|.+|.++|.|--- ..|+.. .++..+-..+..|.. .+-..+
T Consensus 4 ~~kg~viW~TG-LsGSGKTTiA~~l~~~L~~-~g~~~~~LDGD~lR----~~~~~~-gfs~~~R~~n~~r~~--~lak~l 74 (176)
T PRK05541 4 KPNGYVIWITG-LAGSGKTTIAKALYERLKL-KYSNVIYLDGDELR----EIFGHS-GYDKESRIEMALKRA--KLAAFL 74 (176)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHH----HHHCCC-CCCHHHHHHHHHHHH--HHHHHH
T ss_conf 88867999789-9999899999999999997-59977998868999----873658-989999999999999--999998
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 0248980687248761203207999999989998512888997388
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVP 283 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p 283 (427)
. ..|+.++.+.-.+... .+......-..|=-|.+|+|
T Consensus 75 ~--~~g~~vIvs~isp~~~-------~R~~~R~~~~~~~EVyv~~p 111 (176)
T PRK05541 75 A--DQGMIVIVTTISMFNE-------IYAYNRKHLPNYFEVYLKCD 111 (176)
T ss_pred H--HCCCCEEEEECCCCHH-------HHHHHHHHCCCCEEEEEECC
T ss_conf 6--4698036752279899-------99999974887689999489
No 227
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=96.41 E-value=0.014 Score=35.12 Aligned_cols=84 Identities=15% Similarity=0.161 Sum_probs=59.9
Q ss_pred CCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCHHHHHH
Q ss_conf 288899738888898--999998620125435787768899999999999981987675389995658987-52005999
Q gi|254780725|r 274 IFPLVILDVPHVWNS--WTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~-~~~i~~~~ 350 (427)
.|-+-++|+|..... ....++..+|.+++|+...-.--.++.+.++.....+. ++.+++|+++... ..+...++
T Consensus 66 ~~~in~iDtPGh~dF~~~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~---p~ivviNKiD~~~ad~~~v~~~ 142 (179)
T cd01890 66 EYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNL---EIIPVINKIDLPSADPERVKQQ 142 (179)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCCCCCCHHHHHHH
T ss_conf 1489999899864517789889975442789986477873748999999987699---8899986555677899999999
Q ss_pred HHHHHCCCEE
Q ss_conf 9998489537
Q gi|254780725|r 351 FCAPLGITPS 360 (427)
Q Consensus 351 ~~~~lg~~~~ 360 (427)
+++.+|....
T Consensus 143 i~~~~g~~~~ 152 (179)
T cd01890 143 IEDVLGLDPS 152 (179)
T ss_pred HHHHHCCCCC
T ss_conf 9998688976
No 228
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=96.39 E-value=0.056 Score=31.35 Aligned_cols=64 Identities=25% Similarity=0.247 Sum_probs=50.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 2888997388888--989999986201254357877688999999999999819876753899956589
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
.|-+-++|+|... ...+..++..+|-+++|++..-.-.-++++.++...+.+. ++.+++|+.+.
T Consensus 70 ~~~inlIDTPGH~dF~~ev~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l---~~ilviNKiDR 135 (213)
T cd04167 70 SYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGL---PIVLVINKIDR 135 (213)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCC
T ss_conf 0578778898724179999988863776799998788875779999999998699---98999988234
No 229
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein B; InterPro: IPR004435 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cisdithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism , . In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which coverts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner . MoCF is the active co-factor in eukaryotic and some prokaryotic molybdoenzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdoenzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF . Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 () of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) . The MobB domain is similar to that of the urease accessory protein UreG and the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocentres of their respective target enzymes. It is involved in the final step of molybdenum-cofactor biosynthesis. While its precise function has not been identified it is thought to be involved in the transfer of a guanine dinucleotide moiety to molybdopterin, as it shows GTP-binding and weak GTPase activity . The MobB protein (P32125 from SWISSPROT) from Escherichia coli, which is comprised of this domain, is a homodimer . Each molecule is composed of two distinct regions - an outer region comprised of 6 beta-strands and three alpha helices, and an inner region comprised of a two-strand beta hairpin followed by an alpha helix. These regions require interaction with the second monomer to allow proper folding to occur. The two monomers are intertwined and form an extensive 16-stranded beta-sheet. While the active site could not be positively identified, the presence of highly conserved residues suggests the substrate binding site occurs in the central solvent channel.; GO: 0005525 GTP binding, 0006777 Mo-molybdopterin cofactor biosynthetic process.
Probab=96.37 E-value=0.024 Score=33.62 Aligned_cols=102 Identities=16% Similarity=0.224 Sum_probs=60.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
|++|+| .-+.||||+...+.-.|.. +|.+|..|=.+.+ |.-...++-+-.-+..-. +.--+..+.....
T Consensus 1 v~~i~G-~k~SGKTtL~~~l~~~L~~-~Gy~V~~IKH~gh-G~H~~~~d~~GkDs~rhr--------~AGA~~v~~~~~~ 69 (165)
T TIGR00176 1 VLQIVG-YKNSGKTTLIERLVKALKA-RGYRVATIKHDGH-GHHDFDIDKEGKDSYRHR--------EAGADAVIVASSE 69 (165)
T ss_pred CEEEEE-ECCCCHHHHHHHHHHHHHC-CCCCEEEEEECCC-CCCCCEECCCCCCCHHHH--------HCCCCEEEEECCC
T ss_conf 937896-2588678999999999970-7995089860898-887565279987313321--------0436278866790
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEEC
Q ss_conf 8068724876120320799999998999851-28889973
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILD 281 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD 281 (427)
+..++.. .....+..+..+|..+.. .||+|+|-
T Consensus 70 ~~~~~~~------~~g~~e~~L~~~l~~~~~~~~D~~LvE 103 (165)
T TIGR00176 70 RYAVMTE------TQGEEELDLEALLKRLADRELDIILVE 103 (165)
T ss_pred EEEEEEE------CCCCCCCCHHHHHHHCCCCCCCEEEEE
T ss_conf 6899875------289998787999864285526878985
No 230
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=96.34 E-value=0.069 Score=30.76 Aligned_cols=150 Identities=14% Similarity=0.114 Sum_probs=68.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH------HCCCCC---CCCHHHHHCC--CCC
Q ss_conf 67537999746988775689999999999626994999978798986033------438998---7898886318--456
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI------NFDKDP---INSISDAIYP--VGR 227 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~------~l~~~~---~~~l~d~l~~--~~r 227 (427)
+.|+.++++| +-|+||||++--+...+.-. ..++.+=+-|+..=+... +..++| ..++.|-+.- ++-
T Consensus 339 ~~Ge~vaIVG-~SGsGKSTLl~LL~g~y~p~-~G~I~idg~di~~i~~~~lR~~I~~V~Q~~~LF~~TI~eNI~lg~~~~ 416 (569)
T PRK10789 339 KPGQMLGICG-PTGSGKSTLLSLIQRHFDVS-EGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDA 416 (569)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHCC-CCCEEEECEECCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHCCCCCC
T ss_conf 8997899879-99998799999999776426-787465010134257688863147658875025662999986579776
Q ss_pred HHHH--------HHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHH--HHHHHHHHCCCEEEECCCCC-CCHHHHH----
Q ss_conf 1243--------3765320248980687248761203207999999--98999851288899738888-8989999----
Q gi|254780725|r 228 IDKA--------FVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIV--PVLDILEQIFPLVILDVPHV-WNSWTQE---- 292 (427)
Q Consensus 228 lD~~--------~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~--~ll~~l~~~yd~VIiD~p~~-~~~~~~~---- 292 (427)
-++. -++..+.+.++|++-.-+.. ...++.+.-+ .+-..+-...+.+|+|=|.. .+..+..
T Consensus 417 ~~eei~~a~~~a~l~~~i~~lp~G~dT~ige~----G~~LSGGQrQRialARAll~~p~iliLDEaTSaLD~~tE~~i~~ 492 (569)
T PRK10789 417 TQQEIEHVARLASVHEDILRLPQGYDTEVGER----GVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILH 492 (569)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC----CCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHH
T ss_conf 54589999998555687643755323712688----89969999999999999954999899808766689999999999
Q ss_pred HHHH--CCCCCCCCCCCHHHHHHH
Q ss_conf 9862--012543578776889999
Q gi|254780725|r 293 VLTL--SDKVVITTSLDLAGLRNS 314 (427)
Q Consensus 293 ~L~~--AD~vviV~~p~~~slr~a 314 (427)
.+.. .+..++++...+..++++
T Consensus 493 ~l~~~~~~~T~i~IaHRlsti~~a 516 (569)
T PRK10789 493 NLRQWGEGRTVIISAHRLSALTEA 516 (569)
T ss_pred HHHHHCCCCEEEEECCCHHHHHHC
T ss_conf 999974999899971588889859
No 231
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.081 Score=30.36 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCC
Q ss_conf 5675379997469887756899999999996-----2699499997879898
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIAS-----VFAMETLLADLDLPYG 204 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~-----~~~~~VlLvDlDl~~g 204 (427)
-+.|.++-++| -.|+|||+++..+|..... ..+.+|++||..-.|.
T Consensus 16 i~~G~itEi~G-~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~ 66 (235)
T cd01123 16 IETGSITEIFG-EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 64787999999-9998499999999999842475367896299995367758
No 232
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=96.31 E-value=0.037 Score=32.47 Aligned_cols=98 Identities=12% Similarity=0.122 Sum_probs=57.2
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
-+|++|+|-| ++||||+.-.+...|.. +|.+|..|-...+..++ +.+-.-+ -|.-. .
T Consensus 2 ~~Il~ivG~k-~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~~~~----D~~GkDs--------~r~~~---------a 58 (161)
T COG1763 2 MKILGIVGYK-NSGKTTLIEKLVRKLKA-RGYRVATVKHAHHDFDL----DKPGKDT--------YRHRK---------A 58 (161)
T ss_pred CCEEEEEECC-CCCHHHHHHHHHHHHHH-CCCEEEEEEECCCCCCC----CCCCCCC--------CHHHC---------C
T ss_conf 7289999627-99734289999999975-79379999865877777----8898766--------10003---------5
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEC
Q ss_conf 89806872487612032079999999899985128889973
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILD 281 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD 281 (427)
+....+++++.............+..++..+...+|+|++-
T Consensus 59 Ga~~~v~~s~~~~~~~~~~~~~~L~~vl~~l~~~~D~vLVE 99 (161)
T COG1763 59 GADQVVVASDHRTALMTRTPDRDLDAVLSRLDPLLDLVLVE 99 (161)
T ss_pred CCCEEEEECCCEEEEEEECCCCCHHHHHHHCCCCCCEEEEE
T ss_conf 66349995597899998268768999997427556799995
No 233
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=96.26 E-value=0.016 Score=34.60 Aligned_cols=86 Identities=12% Similarity=0.205 Sum_probs=67.6
Q ss_pred CCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHH
Q ss_conf 69989999998618998499998059876778899988853289980899816871899999997656264318999899
Q gi|254780725|r 62 RGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVAD 141 (427)
Q Consensus 62 ~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~ 141 (427)
..+...|...+.... |+.+++|+.++++++++....+.+ .|.+ |+.++...+..---+...+|+.+++++|+....
T Consensus 18 a~~g~~~l~~~~~~~-~~~~lld~~m~~~~~~~~~~~lk~--~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 93 (435)
T COG3706 18 AKKGLIALAILLDHK-PDYKLLDVMMPGMDGFELCRRLKA--EPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPVNDSQ 93 (435)
T ss_pred CCCHHHHHHHHHCCC-CCEEEEECCCCCCCCHHHHHHHHC--CCCC-EEEEEECCCCCCCHHHHHHHHHHHCCCCCCHHH
T ss_conf 254277999974489-874874100688673019987635--8751-699860378777556776313441367777177
Q ss_pred HHHHHHHCCC
Q ss_conf 9997631023
Q gi|254780725|r 142 IINSISAIFT 151 (427)
Q Consensus 142 l~~ai~~~~~ 151 (427)
+......++.
T Consensus 94 ~~~r~~~l~~ 103 (435)
T COG3706 94 LFLRAKSLVR 103 (435)
T ss_pred HHHHHHHHCC
T ss_conf 8875266314
No 234
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=96.21 E-value=0.038 Score=32.35 Aligned_cols=41 Identities=34% Similarity=0.415 Sum_probs=28.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|+.++++| +-|+||||++-=+...+--. ..++.+=+-|+
T Consensus 366 ~~G~~vaiVG-~SGsGKSTL~~LL~gly~p~-~G~I~idg~di 406 (581)
T PRK11176 366 PAGKTVALVG-RSGSGKSTIANLLTRFYDID-EGEILLDGHDL 406 (581)
T ss_pred CCCCEEECCC-CCCCCHHHHHHHHHHHCCCC-CCEEEECCEEH
T ss_conf 9994431228-99986789999998536678-87487898851
No 235
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN; InterPro: IPR013462 The GvpN protein is associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy , . It belongs to a larger family of ATPases .; GO: 0000166 nucleotide binding, 0005524 ATP binding, 0031412 gas vesicle organization and biogenesis, 0031411 gas vesicle.
Probab=96.20 E-value=0.0081 Score=36.50 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=37.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
Q ss_conf 67537999746988775689999999999626994999978798986033
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI 208 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~ 208 (427)
..|.-|-|.|. -|+||||+|.++|. .++++|+++-.|-++++..+
T Consensus 19 ~~G~PvHl~GP-aG~GKT~LA~hvA~----~r~RPV~l~~Gd~eL~~~DL 63 (265)
T TIGR02640 19 KSGYPVHLRGP-AGTGKTTLAMHVAR----KRDRPVVLINGDAELTTSDL 63 (265)
T ss_pred CCCCCEEEECC-CCCCHHHHHHHHHH----HCCCCEEEEECCCCCCCCCC
T ss_conf 27886674478-88556899999997----36896899865823265442
No 236
>PRK09270 frcK putative fructose transport system kinase; Reviewed
Probab=96.19 E-value=0.017 Score=34.57 Aligned_cols=71 Identities=13% Similarity=0.177 Sum_probs=43.5
Q ss_pred CCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCC
Q ss_conf 5626431899989999976310233222345675379997469887756899999999996269-9499997879
Q gi|254780725|r 128 HVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFA-METLLADLDL 201 (427)
Q Consensus 128 Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~-~~VlLvDlDl 201 (427)
++.++...+...++..+-+........ .+..=.+|++.| -.|+||||+|..|+..|.+... ..++++-+|-
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~rR~lIgIaG-~pGSGKSTlA~~l~~~L~~~~~~~~~~~vpmDG 74 (230)
T PRK09270 3 TVNGLDVQAQYLDELIEEVHKPLMLAA--EPQRRTVVGIAG-PPGAGKSTLAETLWEALSQQGPELPAIQVPMDG 74 (230)
T ss_pred EECCEEEEEEECHHHHHHHHHHHHHHC--CCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEECCCC
T ss_conf 146616674514566899999998715--999718999989-998899999999999986237998579973653
No 237
>PRK09581 pleD response regulator PleD; Reviewed
Probab=96.18 E-value=0.059 Score=31.20 Aligned_cols=85 Identities=16% Similarity=0.257 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHH
Q ss_conf 998999999861899849999805987677889998885328-9980899816871899999997656264318999899
Q gi|254780725|r 63 GSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCD-SGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVAD 141 (427)
Q Consensus 63 g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~-p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~ 141 (427)
+...++.... ....|++++++..++..+++.....+..... .+++++.+...++.......+..|++||+.+|.+..+
T Consensus 185 ~~~~~~l~~~-~~~~~d~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~d~~~~~~~~~e 263 (457)
T PRK09581 185 SDPEEALIRA-AEGNYDLIIVSASFENYDPLRLCSQLRSKERTRYVPILLLVDEDEDPRLVKALELGVNDYLMRPIDKNE 263 (457)
T ss_pred CCHHHHHHHH-CCCCCCEEEECCCCCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHCCCCEEEECCCCHHH
T ss_conf 4869999874-357976899756567664689999997143435732999956886166766641465228843786275
Q ss_pred HHHHHHH
Q ss_conf 9997631
Q gi|254780725|r 142 IINSISA 148 (427)
Q Consensus 142 l~~ai~~ 148 (427)
+...+..
T Consensus 264 ~~~r~~~ 270 (457)
T PRK09581 264 LLARVRT 270 (457)
T ss_pred HHHHHHH
T ss_conf 5587999
No 238
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.17 E-value=0.097 Score=29.87 Aligned_cols=116 Identities=15% Similarity=0.102 Sum_probs=76.6
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++..- .......+..+|.+++|.+ -+..|+.+...+++.+++......++.+|-|+.+......++.++
T Consensus 49 ~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e 128 (191)
T cd04112 49 KVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKRED 128 (191)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHH
T ss_conf 99999997998633464647771177778999727988999999999999998666785389861246553026799999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCC
Q ss_conf 9998489537990687999999884796189888999--89999999999985221223
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVS 407 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~ 407 (427)
.++ -|...|.+..|.+.+. -+-+.|..|++.|..+....
T Consensus 129 ~~~------------------~a~~~~~~f~EtSAkt~~nI~e~F~~i~~~i~~~~~~~ 169 (191)
T cd04112 129 GER------------------LAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRKYEQ 169 (191)
T ss_pred HHH------------------HHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCC
T ss_conf 999------------------99982997999854898097999999999998742279
No 239
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.17 E-value=0.081 Score=30.33 Aligned_cols=113 Identities=28% Similarity=0.273 Sum_probs=64.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987898886318456124337653
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~ 236 (427)
.+..|.+|=|.| =.|.||||||..|.-.|-. .|..|-++|-|----.+ +.+-.++-.|-..+..|+-. +.+.
T Consensus 19 ~~~~~~viW~TG-LSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL----~~dLgFs~edR~eniRRvae--vAkl 90 (197)
T COG0529 19 KGQKGAVIWFTG-LSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGL----NRDLGFSREDRIENIRRVAE--VAKL 90 (197)
T ss_pred HCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCHHHHHCC----CCCCCCCHHHHHHHHHHHHH--HHHH
T ss_conf 279985999646-8888787999999999997-59758985574676500----57889786789999999999--9999
Q ss_pred HHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 202489806872487612032079999999899985128889973888
Q gi|254780725|r 237 PVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPH 284 (427)
Q Consensus 237 l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~ 284 (427)
+.. .|+-++.+--.+.+. ..+..+.++.. ..|=-|.||+|-
T Consensus 91 l~d--aG~iviva~ISP~r~---~R~~aR~~~~~--~~FiEVyV~~pl 131 (197)
T COG0529 91 LAD--AGLIVIVAFISPYRE---DRQMARELLGE--GEFIEVYVDTPL 131 (197)
T ss_pred HHH--CCEEEEEEEECCCHH---HHHHHHHHHCC--CCEEEEEECCCH
T ss_conf 987--890899975173099---99999997276--862899957989
No 240
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=96.13 E-value=0.03 Score=33.04 Aligned_cols=194 Identities=12% Similarity=0.192 Sum_probs=101.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC--CCCC---C---HHHHHCC-C---CCHH
Q ss_conf 379997469887756899999999996269949999787989860334389--9878---9---8886318-4---5612
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK--DPIN---S---ISDAIYP-V---GRID 229 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~--~~~~---~---l~d~l~~-~---~rlD 229 (427)
+.|-|.|.-..+|||++++.|...+++ .|.+|. +|-..+..||- .+.- + +.+++.. . -+..
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~------PFK~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mN 74 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVA------PFKSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMN 74 (486)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHHHH-CCCCCC------CCHHHHCCCCCEECCCCCEEEHHHHHHHHHCCCCCCCCCC
T ss_conf 853787214776546752453488873-577547------8706543466078779968755066789873998743428
Q ss_pred HHHHHHHHHCCCC-CEEEEECCCCCCCHHCC---------CHHHHHHHHHHHHHCCCEEEECCCCCCCHH--------HH
Q ss_conf 4337653202489-80687248761203207---------999999989998512888997388888989--------99
Q gi|254780725|r 230 KAFVSRLPVFYAE-NLSILTAPAMLSRTYDF---------DEKMIVPVLDILEQIFPLVILDVPHVWNSW--------TQ 291 (427)
Q Consensus 230 ~~~l~~~l~~~~~-gL~lL~a~~~~~~~~~~---------~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~--------~~ 291 (427)
+.+|+ ++++ +..++.-.......... -...+...++.+.+.||+|++--..+..+. ..
T Consensus 75 PvLLK----P~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~~~~d~Vv~EGAGSpaEiNlr~~Di~Nm 150 (486)
T COG1492 75 PVLLK----PCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLDREYDVVVIEGAGSPAEINLRDRDIANM 150 (486)
T ss_pred CEEEE----ECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHCCCCCCCCCCE
T ss_conf 77870----35888447999463446657178899988999999999998754105589996379823227663661100
Q ss_pred HHHHHCC-CCCCCCCCCH----HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHHHHHHHHCCCEEEEECC
Q ss_conf 9986201-2543578776----88999999999999819876753899956589875-2005999999848953799068
Q gi|254780725|r 292 EVLTLSD-KVVITTSLDL----AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISISDFCAPLGITPSAIIPF 365 (427)
Q Consensus 292 ~~L~~AD-~vviV~~p~~----~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~~~~~~lg~~~~~~IP~ 365 (427)
.+...+| -+++|.+=|. +|+..+..++..-.+. .--.+++|++.-... -+-..+.+++..|.+++.++||
T Consensus 151 ~~a~~~dapvILV~DIdRGGvfAsl~GT~~lL~~~~r~----~VkG~iINkFRGd~~ll~~gik~Le~~tg~~vlGv~P~ 226 (486)
T COG1492 151 GVAEIADAPVILVGDIDRGGVFASLYGTLALLPESDRA----LVKGFIINKFRGDESLLDPGLKWLEELTGVPVLGVLPY 226 (486)
T ss_pred EEEHHCCCCEEEEEEECCCCEEEEEEEHHEECCHHHHC----CEEEEEEEEECCCHHHHHHHHHHHHHHHCCEEEEECCC
T ss_conf 22023389889999511564541730212236876760----01479996317987887459999998619746756525
Q ss_pred CHHHH
Q ss_conf 79999
Q gi|254780725|r 366 DGAVF 370 (427)
Q Consensus 366 D~~~~ 370 (427)
.....
T Consensus 227 ~~~~~ 231 (486)
T COG1492 227 LKDAL 231 (486)
T ss_pred CCCCC
T ss_conf 55455
No 241
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.11 E-value=0.028 Score=33.18 Aligned_cols=41 Identities=20% Similarity=0.299 Sum_probs=27.9
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 56753799974698877568999999999962699499997879
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
-..|.+++++| +-|+||||+.--|.-.+.. ...+.+=+.|.
T Consensus 27 I~~Ge~vaIvG-~sGsGKSTLl~lL~gl~~~--~G~I~idg~~i 67 (275)
T cd03289 27 ISPGQRVGLLG-RTGSGKSTLLSAFLRLLNT--EGDIQIDGVSW 67 (275)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHHHCCC--CCEEEECCEEC
T ss_conf 87999999999-9999799999999603578--95399998806
No 242
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=96.04 E-value=0.05 Score=31.61 Aligned_cols=107 Identities=11% Similarity=0.220 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCH
Q ss_conf 99999998864110020223730699899999986189984999980598767788999888532899808998168718
Q gi|254780725|r 39 TLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDV 118 (427)
Q Consensus 39 ~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~ 118 (427)
.+..-++.-.. .+.........++...+.+.+... .|+++++|+.++..++++....++.. +|...|+.+..+++-
T Consensus 12 ~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fldI~~~~~~G~ela~~i~~~-~~~~~Ivfvt~~~~~ 87 (244)
T COG3279 12 LAREELRRILN--EIPDIEIVGEAENGEEALQLLQGL-RPDLVFLDIAMPDINGIELAARIRKG-DPRPAIVFVTAHDEY 87 (244)
T ss_pred HHHHHHHHHHH--HHHHCCHHHHHCCHHHHHHHHHCC-CCCEEEEEECCCCCCHHHHHHHHCCC-CCCCEEEEEEEHHHH
T ss_conf 67999999988--744211113312303178887602-57769997237652449999986156-988539999861543
Q ss_pred HHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 999999976562643189998999997631023
Q gi|254780725|r 119 SLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 119 ~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
.. .+-...+-||+.||.+...+...+.++..
T Consensus 88 a~--~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 88 AV--AAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred HH--HHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_conf 23--33133466774285426899999999888
No 243
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=96.00 E-value=0.12 Score=29.37 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+.++|++... .......+..+|.+++|.. -+..|+.....+++.+.+......++.+|-|+.+.+....++.++
T Consensus 47 ~~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e 126 (162)
T pfam00071 47 TVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEE 126 (162)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHH
T ss_conf 99999997898720467889986257655042348988999999999999998579886288997524746518899999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
.-..|...|.+..|.+.++ -+-+.|..|+++|.
T Consensus 127 ------------------~~~~a~~~~~~y~e~Sak~g~gI~~~F~~i~~~il 161 (162)
T pfam00071 127 ------------------GEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161 (162)
T ss_pred ------------------HHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf ------------------99999980997999737888299999999999967
No 244
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=95.98 E-value=0.047 Score=31.79 Aligned_cols=40 Identities=20% Similarity=0.338 Sum_probs=32.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 7999746988775689999999999626994999978798
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-.-+++++.|.|||++|.|+|..+|....++|++.=+-..
T Consensus 197 dLiilAaRP~mGKTafalnia~n~a~~~~~~v~iFSLEM~ 236 (435)
T COG0305 197 DLIIVAARPGMGKTALALNIALNAAADGRKPVAIFSLEMS 236 (435)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 7799716899975899999999999855897599982679
No 245
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=95.98 E-value=0.12 Score=29.30 Aligned_cols=112 Identities=14% Similarity=0.222 Sum_probs=76.0
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 288899738888--89899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++.. +......-+..|+-+++|.+ -+..|+.+..++++.+++..++ -++.+|-|+++......++.+
T Consensus 54 ~v~l~iwDtaGqe~f~~l~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~-~p~iLVGNK~DL~~~r~V~~e- 131 (189)
T cd04121 54 RVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPG-VPKILVGNRLHLAFKRQVATE- 131 (189)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCC-CCEEEEEECCCHHHCCCCCHH-
T ss_conf 999999817886221167898866337048982279889999999999999997689-878996132550330889999-
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9998489537990687999999884796189888999--89999999999985221
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRV 404 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~ 404 (427)
+...-|...|.+..|.+.+. -+.+.|..|++.+.-+.
T Consensus 132 -----------------e~~~~A~~~~~~f~EtSAk~g~nV~e~F~~l~~~il~~~ 170 (189)
T cd04121 132 -----------------QAQAYAERNGMTFFEVSPLCNFNITESFTELARIVLMRH 170 (189)
T ss_pred -----------------HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC
T ss_conf -----------------999999988999999600679398999999999999865
No 246
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.97 E-value=0.1 Score=29.77 Aligned_cols=112 Identities=22% Similarity=0.279 Sum_probs=59.9
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860334389987898886318456124337653
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~ 236 (427)
.+..|.+|=|+| -.|.||||||..|...|-. .|.++.++|.|---.. |+.+..++-.|-..+..|+-.. .++
T Consensus 439 ~g~~~~~iw~tG-lsgsGKstiA~~le~~L~~-~g~~~~~LDGd~lR~g----l~~dlgf~~~dR~enirR~~ev--a~l 510 (613)
T PRK05506 439 KGQKPATVWFTG-LSGSGKSTIANLVERRLHA-LGRHTYVLDGDNVRHG----LNRDLGFTDADRVENIRRVAEV--ARL 510 (613)
T ss_pred HCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHHH----HCCCCCCCHHHHHHHHHHHHHH--HHH
T ss_conf 489976999977-8989747999999999997-7998799880898741----0457797989999999999999--999
Q ss_pred HHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCC
Q ss_conf 20248980687248761203207999999989998512888997388
Q gi|254780725|r 237 PVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVP 283 (427)
Q Consensus 237 l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p 283 (427)
+. ..|+-++.+.-.+... ..+..+.++.. ..|--|.+|+|
T Consensus 511 ~~--~aG~i~i~a~iSp~~~---~R~~~r~~~~~--~~f~Ev~v~~~ 550 (613)
T PRK05506 511 MA--DAGLIVLVSFISPFRE---ERELARALIGE--GEFVEVFVDTP 550 (613)
T ss_pred HH--HCCCEEEEECCCCCHH---HHHHHHHHCCC--CCEEEEEEECC
T ss_conf 98--6898899975889989---99999975788--87899999089
No 247
>TIGR01618 phage_P_loop phage nucleotide-binding protein; InterPro: IPR006505 These sequences represent an uncharacterised family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of these proteins is unknown..
Probab=95.97 E-value=0.015 Score=34.81 Aligned_cols=182 Identities=16% Similarity=0.178 Sum_probs=93.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
-.|-++| |||.||||++=+ ...+++++|+|-..- +|.+ .
T Consensus 14 ~~~lIYG-~~G~GKTS~~K~--------l~GktL~l~~D~SSk----------------VL~G----------------~ 52 (229)
T TIGR01618 14 FRYLIYG-KPGLGKTSTIKY--------LPGKTLVLSLDKSSK----------------VLAG----------------D 52 (229)
T ss_pred CEEEEEC-CCCCCCCCEEEE--------CCCCEEEEECCCCCC----------------CCCC----------------C
T ss_conf 3688875-898872305664--------588789883678644----------------3468----------------9
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEEC-CCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9806872487612032079999999899985128889973-888889899999862012543578776889999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILD-VPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD-~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
++++++-+..+.......-.+.+.++.......||-|||| +.+....|....=..+-.-..+-.+++.-+... +++.
T Consensus 53 ~nvdiim~~~d~~~~~~~~~e~~~~~~~~~~~~Y~niViDNis~lq~~~L~~~gr~~K~~~~p~~q~Y~~~~~~--~~d~ 130 (229)
T TIGR01618 53 ENVDIIMADLDDEKPIQEMVEFYKELQNIQAEEYDNIVIDNISELQKLWLINLGREAKNGRSPELQHYQKLDLY--FLDL 130 (229)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHCCHHHCCCEEEEECHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHH--HHHH
T ss_conf 98338998606998478999999997322534576589814278999999846844245788650003688899--9999
Q ss_pred HHHCCC-CCCCCEEEEECCCCCC-------------CCHHHHHHHHHHHCCC-EEEEECCCHHHHHHHHHCCCCEEEECC
Q ss_conf 998198-7675389995658987-------------5200599999984895-379906879999998847961898889
Q gi|254780725|r 321 LKKLRP-ADKPPYLVLNQVKTPK-------------KPEISISDFCAPLGIT-PSAIIPFDGAVFGMSANSGKMIHEVDP 385 (427)
Q Consensus 321 l~~~~~-~~~~~~iVlNr~~~~~-------------~~~i~~~~~~~~lg~~-~~~~IP~D~~~~~~A~~~G~pi~e~~p 385 (427)
++-+.. ... .+|..=++... .+.+..+-+-..+|.. +.+.|-..++. ++-.. +.+.....
T Consensus 131 ~~vl~~l~~~--~i~~tAwe~~~~~~~e~G~iy~ry~pdir~kvlN~~lgl~DvVaRl~~~~~t-G~eev--Rg~~L~~~ 205 (229)
T TIGR01618 131 LTVLKELKNK--NIYVTAWEDTNQLSLESGQIYNRYLPDIREKVLNAFLGLTDVVARLVKNAKT-GEEEV--RGFILDPS 205 (229)
T ss_pred HHHHHHCCCC--EEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCC-CHHHC--CCEEECCC
T ss_conf 9999855898--7999876566753401146687666775478876550333234567656888-81131--32355599
Q ss_pred CCHHHH
Q ss_conf 998999
Q gi|254780725|r 386 KSAIAN 391 (427)
Q Consensus 386 ~s~~a~ 391 (427)
++-+||
T Consensus 206 ~G~yAK 211 (229)
T TIGR01618 206 KGNYAK 211 (229)
T ss_pred CCCCCC
T ss_conf 872121
No 248
>KOG2749 consensus
Probab=95.94 E-value=0.12 Score=29.20 Aligned_cols=96 Identities=20% Similarity=0.240 Sum_probs=54.6
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHCCC--CEEECCCCC---HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHH
Q ss_conf 89980899816871899999997656--264318999---8999997631023322234567537999746988775689
Q gi|254780725|r 104 DSGTKVIVIGDTNDVSLYRALISNHV--SEYLIEPLS---VADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTI 178 (427)
Q Consensus 104 ~p~~~Vivig~~~d~~l~r~l~r~Gv--~dyl~~P~~---~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTi 178 (427)
++++++.+.+-+.-. + + -.|. .+|+..--. -..+..++...-. ......+.|..+.++|. --+||||+
T Consensus 47 ~~~~k~aifTw~Gct-l--e--v~G~t~~~YVs~eTpM~~ylNlH~ale~~R~-~~e~~~~~GPrv~vVGp-~d~GKsTl 119 (415)
T KOG2749 47 PNGMKVAIFTWQGCT-L--E--VEGTTEVEYVSDETPMVLYLNLHAALEKRRM-QAEEESSYGPRVMVVGP-TDVGKSTL 119 (415)
T ss_pred CCCCEEEEEEEECCE-E--E--EECCCCCEEECCCCCHHHHHHHHHHHHHHHH-HHHHHHCCCCEEEEECC-CCCCHHHH
T ss_conf 888558999982638-9--9--9435241585189873000139999999866-55420025977999898-76566789
Q ss_pred HHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf 99999999962699499997879898603
Q gi|254780725|r 179 AHNCAFSIASVFAMETLLADLDLPYGTAN 207 (427)
Q Consensus 179 A~nLA~~LA~~~~~~VlLvDlDl~~g~~~ 207 (427)
+--|-.+..+ .|++.+.+|+|+++|...
T Consensus 120 ~r~L~nyavk-~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749 120 CRILLNYAVK-QGRRPLFVELDVGQGSIT 147 (415)
T ss_pred HHHHHHHHHH-CCCCCEEEECCCCCCCEE
T ss_conf 9999999987-178653897479997244
No 249
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=95.91 E-value=0.13 Score=29.13 Aligned_cols=110 Identities=17% Similarity=0.178 Sum_probs=73.8
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--98999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|.|++..- .......+..||.+++|... +..|+.+.+.+++.+++...+..++.+|-|+.+.....+++.++
T Consensus 55 ~v~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~ 134 (169)
T cd04114 55 KIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQR 134 (169)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHH
T ss_conf 99999998999844451557774236645998148988899999999999998689886389731134345417889999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
. -.-|..+|.+..|.+.+. -+-+.|..||++|.
T Consensus 135 ~------------------~~~a~~~~~~~~E~SAktg~nV~e~F~~la~~li 169 (169)
T cd04114 135 A------------------EEFSDAQDMYYLETSAKESDNVEKLFLDLACRLI 169 (169)
T ss_pred H------------------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf 9------------------9999988999999868988088999999999879
No 250
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=95.85 E-value=0.043 Score=32.04 Aligned_cols=103 Identities=17% Similarity=0.172 Sum_probs=67.6
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH--
Q ss_conf 128889973888889--8999998620125435787768899999999999981987675389995658987520059--
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISI-- 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~-- 348 (427)
..+.|+++|+|.... .........+|..++|+...-.-..++++.+..++.++. +.+.+++|+++.-.-.+-..
T Consensus 75 ~~~~~~iiDtPGH~dfi~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi--~~iIv~vNKmD~v~~~e~~f~~ 152 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGI--RHVVVAVNKMDLVDYSEEVFEE 152 (208)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC--CEEEEEEECCCCCCCCHHHHHH
T ss_conf 99269998789628899999999863774799997588872789999999997499--8399999885768999899999
Q ss_pred -----HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEEC
Q ss_conf -----999998489537990687999999884796189888
Q gi|254780725|r 349 -----SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVD 384 (427)
Q Consensus 349 -----~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~ 384 (427)
..|.+.++.+....||-. ...|.-+.+-.
T Consensus 153 i~~~~~~~l~~~~~~~~~~IPiS-------a~~GdNi~~~s 186 (208)
T cd04166 153 IVADYLAFAAKLGIEDITFIPIS-------ALDGDNVVSRS 186 (208)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEE-------CCCCCCCCCCC
T ss_conf 99999999997499887199812-------67788878699
No 251
>PRK07773 replicative DNA helicase; Validated
Probab=95.84 E-value=0.055 Score=31.39 Aligned_cols=46 Identities=22% Similarity=0.324 Sum_probs=36.2
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|.. .+++++-|+|||++|.|+|...|...+.+|++.-+....-.+
T Consensus 202 ~~~l-~i~a~rp~~GKt~~~~~~a~~~a~~~~~~v~~FSLEMs~~ql 247 (868)
T PRK07773 202 PGQM-IIVAARPGVGKSTLGLDFARSCSIRHRLASVIFSLEMSKEEI 247 (868)
T ss_pred CCCE-EEEEECCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHH
T ss_conf 7767-999828977777899999999998659965897305678899
No 252
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.84 E-value=0.14 Score=28.93 Aligned_cols=43 Identities=14% Similarity=0.166 Sum_probs=35.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 675379997469887756899999999996269949999787989
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
+.|.++.+.| --|+|||+++..+++..++ .|.+++++-++..-
T Consensus 30 p~g~~~li~G-~~G~GKt~~~~~f~~~~~~-~g~~~~~~~~ee~~ 72 (241)
T PRK06067 30 PFGSLILIEG-ENDTGKSVLSQQFVWGALN-QGKRGLAITTENTS 72 (241)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCH
T ss_conf 7990899980-7998879999999999986-79829999942899
No 253
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=95.76 E-value=0.15 Score=28.75 Aligned_cols=113 Identities=11% Similarity=0.162 Sum_probs=76.5
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--98999998620125435787-7688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|.|++..- .......+..+|.+++|.+. +..|+.+...+++.++....+..++.+|-|+.+......++.+
T Consensus 51 ~~~~l~iwDt~G~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~~ 130 (168)
T cd01866 51 KQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYE 130 (168)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHH
T ss_conf 99999999799973346255888664368999344587799999999999999867999659984342354540778999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCC
Q ss_conf 99998489537990687999999884796189888999--8999999999998522
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGR 403 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr 403 (427)
+ .-.-|...|-+..|.+.+. -+.+.|..|++.|..|
T Consensus 131 e------------------~~~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i~~k 168 (168)
T cd01866 131 E------------------GEAFAKEHGLIFMETSAKTASNVEEAFINTAKEIYEK 168 (168)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHC
T ss_conf 9------------------9999998699999976788808899999999999739
No 254
>PRK00007 elongation factor G; Reviewed
Probab=95.75 E-value=0.15 Score=28.73 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=20.3
Q ss_pred HHHHHHHHHCCCCCCEEEEE-CCCCCCCHHHHHHHHHHHCC
Q ss_conf 89999998618998499998-05987677889998885328
Q gi|254780725|r 65 IAEAVSCFSDSSTPDLIIVQ-TKVDSREVLSALEPLAEVCD 104 (427)
Q Consensus 65 ~~~A~~~~~~~~~P~~iivd-~~~~~~~~~~~l~~la~~~~ 104 (427)
......+....-.|-++++- ++-...+....++++.+...
T Consensus 117 T~~v~r~a~~~~lp~i~fINK~Dr~~ad~~~~l~~i~~~l~ 157 (693)
T PRK00007 117 SETVWRQADKYKVPRIVFVNKMDRTGADFLRVVEQIKDRLG 157 (693)
T ss_pred HHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHC
T ss_conf 99999999875989699997977899998999999999859
No 255
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.74 E-value=0.15 Score=28.68 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=59.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
+.|.++.+.| .-|+|||+++..++|...+ .|.+|+++-.... ..+.+.+.+.+.-..-+ ...
T Consensus 22 p~gs~~li~G-~~GtGKsi~~~~~~~~~l~-~g~~~~yis~e~t---------------~~~~i~qm~s~g~di~~-~~~ 83 (230)
T PRK08533 22 PFGSIILIEG-DESTGKSILSQRLAYGFLQ-NGYSVSYVSSQLT---------------TTEFIKQMMSLGYDINK-KLI 83 (230)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCC---------------HHHHHHHHHHCCCCCHH-HHH
T ss_conf 8984899986-8998789999999999987-8986999994389---------------99999999986998179-975
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCC
Q ss_conf 2489806872487612032079999999899985-12888997388
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVP 283 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p 283 (427)
...|.+++.-.... ........+..+++..+ ...|+||||.=
T Consensus 84 --~G~l~~i~~~~~~~-~~~~~~~~L~~ll~~~~~~~~dvIIIDSl 126 (230)
T PRK08533 84 --SGKLLYIPVYPLLS-GNSEKRDFLDKLMNTRRFYEKDVVIIDSL 126 (230)
T ss_pred --CCCEEEEECCCCCC-CHHHHHHHHHHHHHHHHHCCCCEEEEECC
T ss_conf --79679996134335-40457899999973266437989999053
No 256
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.73 E-value=0.15 Score=28.65 Aligned_cols=97 Identities=16% Similarity=0.131 Sum_probs=56.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHCCCCCHHHHHHHH
Q ss_conf 6753799974698877568999999999962699499997879898603---3438998789888631845612433765
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN---INFDKDPINSISDAIYPVGRIDKAFVSR 235 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~---~~l~~~~~~~l~d~l~~~~rlD~~~l~~ 235 (427)
..|.++.+.| --|+||||+|.+++++-++ .|.+++++-++-.-..+- ..+|.+ ++.
T Consensus 264 ~~GsstLi~G-p~GtGKTtla~qFl~~~a~-~GE~~l~~~FeE~~~~l~~~a~~~G~d-------------------l~~ 322 (501)
T PRK09302 264 FRGSIILVSG-ATGTGKTLLVSKFAEAACR-RGERCLLFAFEESRAQLVRNATSWGID-------------------LEE 322 (501)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCHHHHHHHHHHCCCC-------------------HHH
T ss_conf 5894699988-9998889999999999986-599089999967999999999973998-------------------488
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH-CCCEEEECC
Q ss_conf 32024898068724876120320799999998999851-288899738
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ-IFPLVILDV 282 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~-~yd~VIiD~ 282 (427)
+.. ...|.+......... ..+.+..+.+...+ ....||||-
T Consensus 323 ~~~--~G~l~i~~~~p~~~~----~~e~~~~i~~~v~~~~~~rVvIDs 364 (501)
T PRK09302 323 MER--KGLLKIICARPESTG----LEDHLQIIKREIEEFKPSRVAVDP 364 (501)
T ss_pred HHH--CCCEEEEEECCCCCC----HHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 874--894799983700059----899999999999972998999958
No 257
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.70 E-value=0.081 Score=30.35 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 28889973888889--899999862012543578-7768899999999999981---98767538999565898752005
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKL---RPADKPPYLVLNQVKTPKKPEIS 347 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~---~~~~~~~~iVlNr~~~~~~~~i~ 347 (427)
.+.+-|+|++..-. ......+..||.+++|.. -+..|+.+...+.+.+... .....++.+|-|+++......++
T Consensus 46 ~~~l~iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~ 125 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCC
T ss_conf 99999998999731167889982367658999727977899999999999999853379995289514553503305789
Q ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999998489537990687999999884796189888999--89999999999985221223211105899998742340
Q gi|254780725|r 348 ISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNMKC 425 (427)
Q Consensus 348 ~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~rk~ 425 (427)
.++ .+ .-|...|....|.+.+. -+-+.|..|++.|..+.............-+..-++||
T Consensus 126 ~~e----------------~~--~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~k~~c 187 (190)
T cd04144 126 TEE----------------GA--ALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKC 187 (190)
T ss_pred HHH----------------HH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 999----------------99--999980998999735888097999999999999877435788888776778789888
Q ss_pred C
Q ss_conf 3
Q gi|254780725|r 426 F 426 (427)
Q Consensus 426 ~ 426 (427)
+
T Consensus 188 ~ 188 (190)
T cd04144 188 V 188 (190)
T ss_pred E
T ss_conf 7
No 258
>PRK03846 adenylylsulfate kinase; Provisional
Probab=95.70 E-value=0.023 Score=33.74 Aligned_cols=63 Identities=25% Similarity=0.235 Sum_probs=44.7
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCC
Q ss_conf 456753799974698877568999999999962699499997879898603343899878988863184
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPV 225 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~ 225 (427)
.+..|.+|=++| -.|.||||+|-.|...|.. .+.+++++|.|---. .|+.+..++..+-..+.
T Consensus 20 ~~~kg~viWlTG-LSGSGKTTlA~~L~~~L~~-~~~~~~~LDGD~lR~----~l~~dlgfs~~dR~~n~ 82 (198)
T PRK03846 20 HGHKGVVLWFTG-LSGSGKSTVAGALEEALHE-LGVHTYLLDGDNVRH----GLCSDLGFSDADRKENI 82 (198)
T ss_pred HCCCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECHHHHHH----HHCCCCCCCHHHHHHHH
T ss_conf 689986999879-9999889999999999997-599759977799987----43667898999999999
No 259
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=95.69 E-value=0.16 Score=28.58 Aligned_cols=110 Identities=18% Similarity=0.174 Sum_probs=72.1
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 128889973888889--899999862012543578-77688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|+|++.... ......+..+|.+++|.. -+..|+.++.++++.++.......++.+|-|+.+......++.+
T Consensus 47 ~~~~l~i~D~~g~e~~~~~~~~~~~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~~~ 126 (161)
T cd01861 47 KTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTE 126 (161)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHH
T ss_conf 99999999799853157888988665258999984799899999999999999865789849996102110221778999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
+ ...-|...|-+..|.+.++ -+.+.|..||+.|
T Consensus 127 e------------------~~~~a~~~~~~y~E~Sak~~~nV~e~F~~la~~l 161 (161)
T cd01861 127 E------------------GEKKAKELNAMFIETSAKAGHNVKELFRKIASAL 161 (161)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9------------------9999998499899983477808899999999709
No 260
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=95.67 E-value=0.05 Score=31.62 Aligned_cols=60 Identities=18% Similarity=0.253 Sum_probs=42.1
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 1899989999976310233222345675379997469887756899999999996269949999787989
Q gi|254780725|r 134 IEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-||-+.....+.|.= .-+.|+.|+|+| ..|+||||++.-|+-.|.=. +-+|.|=|.+++.
T Consensus 368 ~~pg~~~~vl~~V~L--------~l~~G~r~Ai~G-~SG~GKsTLL~~L~G~l~P~-~G~vtl~G~~~~~ 427 (566)
T TIGR02868 368 GYPGAPPNVLDGVSL--------DLPPGERVAILG-PSGSGKSTLLATLAGLLDPL-QGEVTLDGVPVSS 427 (566)
T ss_pred ECCCCCHHHHCCCCC--------CCCCCCCEEEEC-CCCCCHHHHHHHHHHHCCCC-CCCEEECCCCHHH
T ss_conf 269873465427864--------113886089866-88765789999998402899-9917877732432
No 261
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.67 E-value=0.035 Score=32.57 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=45.3
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 1288899738888--89899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
..+.|+|+|+|.. +..........||..++|+..+-.-+.++++-+..++.++. +.+.+++|+++.-
T Consensus 105 ~~r~~~i~DaPGH~~f~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI--~~iIVaVNKMDlV 173 (475)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGI--KHLVVAVNKMDLV 173 (475)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCC--CEEEEEEECHHCC
T ss_conf 87689997379638778889888876788999998988947888999999986599--8599998504313
No 262
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=95.64 E-value=0.13 Score=29.09 Aligned_cols=48 Identities=15% Similarity=0.126 Sum_probs=40.3
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 45675379997469887756899999999996269949999787989860
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.-+.|+++.|.| .-|+|||+++.++++..++. |.+|++|-++-...++
T Consensus 19 G~p~g~~~lI~G-~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~~l 66 (260)
T COG0467 19 GLPRGSVVLITG-PPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPEEL 66 (260)
T ss_pred CCCCCCEEEEEE-CCCCCHHHHHHHHHHHHHHC-CCEEEEEEEECCHHHH
T ss_conf 988997899993-89986899999999977626-9858999920698999
No 263
>pfam03205 MobB Molybdopterin guanine dinucleotide synthesis protein B. This protein contains a P-loop.
Probab=95.64 E-value=0.038 Score=32.35 Aligned_cols=42 Identities=14% Similarity=0.211 Sum_probs=33.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCE-EEEECCCCCCCC
Q ss_conf 79997469887756899999999996269949-999787989860
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMET-LLADLDLPYGTA 206 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~V-lLvDlDl~~g~~ 206 (427)
+|.|+|. -++||||++-.|...+.+ .|.++ +++|+|+..+..
T Consensus 2 ~v~i~G~-~~sGKttl~~~L~~~~~~-~g~~~~~~~~~d~gq~~~ 44 (122)
T pfam03205 2 IVLVVGP-KDSGKTTLIRKLLNYLKR-RGYRVAVVKHLDHGQGEI 44 (122)
T ss_pred EEEEECC-CCCCHHHHHHHHHHHHHH-CCCCEEEEEECCCCCCCC
T ss_conf 7999948-999899999999999998-799448999899998776
No 264
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.62 E-value=0.038 Score=32.34 Aligned_cols=13 Identities=8% Similarity=0.082 Sum_probs=7.9
Q ss_pred HHHCCCEEEECCC
Q ss_conf 8512888997388
Q gi|254780725|r 271 LEQIFPLVILDVP 283 (427)
Q Consensus 271 l~~~yd~VIiD~p 283 (427)
.+..-.||+||--
T Consensus 391 n~~tGsFILID~~ 403 (613)
T PRK05506 391 NRTTGSFILIDRL 403 (613)
T ss_pred CCCCCCEEEEECC
T ss_conf 8666658999889
No 265
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.54 E-value=0.052 Score=31.51 Aligned_cols=41 Identities=24% Similarity=0.358 Sum_probs=29.0
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|.+++++| +-|+||||+.--+.-.+.-. ..++.+-+-|+
T Consensus 26 ~~Ge~i~ivG-~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i 66 (171)
T cd03228 26 KPGEKVAIVG-PSGSGKSTLLKLLLRLYDPT-SGEILIDGVDL 66 (171)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEECCEEC
T ss_conf 5998999999-99983999999997677589-74899999998
No 266
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=95.54 E-value=0.13 Score=29.05 Aligned_cols=116 Identities=12% Similarity=0.121 Sum_probs=76.8
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 128889973888889--899999862012543578-77688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|+|++..-. ......+..||.+++|.+ -+..|+.+...+++.++...+...++.+|-|+.+......++.+
T Consensus 47 ~~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~ 126 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSN 126 (188)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHH
T ss_conf 99999999899971045789998637867999803898789999999999999878986624510013447660679999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 99998489537990687999999884796189888999--8999999999998522122
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTV 406 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~ 406 (427)
+. -.-|...|-+..|.+.+. -+-+.|..|++.+..+...
T Consensus 127 e~------------------~~~a~~~~~~~~E~SAktg~nV~e~F~~l~~~i~~~~~~ 167 (188)
T cd04125 127 IA------------------KSFCDSLNIPFFETSAKQSINVEEAFILLVKLIIKRLEE 167 (188)
T ss_pred HH------------------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99------------------999998699899974788909899999999999998761
No 267
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=95.49 E-value=0.19 Score=28.13 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=107.3
Q ss_pred CCEEE--EECCCCCC-CHHHHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHHCCCCEEECC----CCCHHHHHHHH
Q ss_conf 84999--98059876-778899988853289980899816871----899999997656264318----99989999976
Q gi|254780725|r 78 PDLII--VQTKVDSR-EVLSALEPLAEVCDSGTKVIVIGDTND----VSLYRALISNHVSEYLIE----PLSVADIINSI 146 (427)
Q Consensus 78 P~~ii--vd~~~~~~-~~~~~l~~la~~~~p~~~Vivig~~~d----~~l~r~l~r~Gv~dyl~~----P~~~~~l~~ai 146 (427)
-++|+ ||....-. .-.+-.+.|.. .+.+|+++-.--| -..+-+..+.|..+.+.- -....+|.+.+
T Consensus 118 aD~IlfVvD~~~glt~~D~eia~~LRk---~~kpviLVvNK~D~~~~~~~~~efy~LGf~~~i~ISA~Hg~Gi~dLld~i 194 (474)
T PRK03003 118 ADAVLFVVDATVGATATDEAVARLLRR---SGKPVFLAANKVDSERGEADAAALWSLGLGEPHPVSALHGRGVADLLDAV 194 (474)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHH
T ss_conf 999999996898988789999999875---39977998675566210234899997579986996020378979999999
Q ss_pred HHCCCCCC--CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCC
Q ss_conf 31023322--2345675379997469887756899999999996269949999787989860334389987898886318
Q gi|254780725|r 147 SAIFTPQE--EGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYP 224 (427)
Q Consensus 147 ~~~~~~~~--~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~ 224 (427)
...+.... ........-||++| |..+||||+.-. |.. ..+++ + +...|++- |.
T Consensus 195 ~~~l~~~~~~~~~~~~~~rIAIvG-rPNvGKStL~N~----llg--~~r~i-v--s~~~GTTR------------Ds--- 249 (474)
T PRK03003 195 LAALPEVPEVGSAVGGPRRVALVG-KPNVGKSSLLNK----LAG--EERSV-V--HDVAGTTV------------DP--- 249 (474)
T ss_pred HHHCCCCCCCCCCCCCCCEEEEEC-CCCCCHHHHHHH----HHC--CCCEE-E--CCCCCCCC------------CC---
T ss_conf 974877664433457762799980-899878899999----858--97567-4--58998515------------44---
Q ss_pred CCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-------------CHHHH
Q ss_conf 45612433765320248980687248761203207999999989998512888997388888-------------98999
Q gi|254780725|r 225 VGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-------------NSWTQ 291 (427)
Q Consensus 225 ~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-------------~~~~~ 291 (427)
++..+ -.....|+++|++..- ..-+.
T Consensus 250 ---I~~~~--------------------------------------~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl 288 (474)
T PRK03003 250 ---VDSLI--------------------------------------ELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTH 288 (474)
T ss_pred ---EEEEE--------------------------------------EECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH
T ss_conf ---05899--------------------------------------9999899999898766355334314589999999
Q ss_pred HHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 99862012543578776889999999999998198767538999565898
Q gi|254780725|r 292 EVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 292 ~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
.++..||.+++|++.+..--..=.+++..+.+.+ +.+.+++|+++.-
T Consensus 289 ~aI~~advvilviDa~egit~QD~~Ia~~v~~~g---k~~IivvNKwDLv 335 (474)
T PRK03003 289 AAIDAAEVAVVLIDASEPLTEQDQRVLSMVIEAG---RALVLAFNKWDLV 335 (474)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHC---CCEEEEEECHHCC
T ss_conf 9987335579998546587499999999999809---9579999714416
No 268
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=95.47 E-value=0.18 Score=28.28 Aligned_cols=110 Identities=9% Similarity=0.112 Sum_probs=74.0
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--9899999862012543578-77688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|.|++... .......+..|+.+++|.+ -+..|+.+...+++.+.+..+...++.+|-|+++.....+++
T Consensus 47 ~~i~l~iwDtaGqe~~~~~~~~y~r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~-- 124 (161)
T cd04117 47 IKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVG-- 124 (161)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCC--
T ss_conf 999999997999602363558887641688996148988999999999999998789986499987327878627799--
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
.+ +...-|...|.+..|.+.+. -+-+.|..|++.|
T Consensus 125 ---------------~~-~~~~~a~~~~~~~~etSAk~~~nV~e~F~~l~~~i 161 (161)
T cd04117 125 ---------------DE-QGNKLAKEYGMDFFETSACTNSNIKESFTRLTELV 161 (161)
T ss_pred ---------------HH-HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf ---------------99-99999998699799967789829899999999649
No 269
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=95.45 E-value=0.12 Score=29.27 Aligned_cols=41 Identities=12% Similarity=0.290 Sum_probs=27.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67537999746988775689999999999626994999978798
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
+.|.+++++| +.|+||||++--+.... -. ..++.+=+-|+.
T Consensus 374 ~~Ge~vaIVG-~SGsGKSTl~~LL~g~~-p~-~G~I~i~g~di~ 414 (588)
T PRK11174 374 PAGQRVALVG-PSGAGKTSLLNALLGFL-PY-QGSLKINGIELR 414 (588)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHC-CC-CCEEEECCEECC
T ss_conf 4997899989-99864999999998728-98-838999998603
No 270
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=95.45 E-value=0.039 Score=32.29 Aligned_cols=41 Identities=22% Similarity=0.237 Sum_probs=32.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5379997469887756899999999996269949999787989
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
++.+.++| .-|+||||++..+|..+... ...++.++.+...
T Consensus 2 ~~~ill~G-~~GsGKTtl~~~la~~~~~~-~~~v~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVG-PPGSGKTTLARALARELGPP-GGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEEC-CCCHHHHHHHHHHHHHHCCC-CCCEEEEEHHHHH
T ss_conf 97899999-99702999999999872668-9968998759989
No 271
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.44 E-value=0.052 Score=31.54 Aligned_cols=40 Identities=18% Similarity=0.275 Sum_probs=35.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 379997469887756899999999996269949999787989
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
|+|+|+| .-|+||||+...|...|.. +|.+|..|=.|.+.
T Consensus 2 kii~ivG-~snSGKTTLi~kli~~l~~-~G~~V~~iKH~~H~ 41 (159)
T cd03116 2 KVIGFVG-YSGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD 41 (159)
T ss_pred EEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEECCCC
T ss_conf 2999996-7999999999999999997-79859899734767
No 272
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=95.43 E-value=0.19 Score=28.01 Aligned_cols=111 Identities=11% Similarity=0.102 Sum_probs=75.3
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 288899738888--898999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-++|++.. ........+..+|-+++|.+. +..|+.+...+++.++...+...++.+|-|+.+......++.++
T Consensus 49 ~i~l~iwDtaGqe~~~~l~~~y~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~ 128 (165)
T cd01865 49 RVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSER 128 (165)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHH
T ss_conf 99999996999834554415441135448998517887999999999999998689872599960242355518899999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 9998489537990687999999884796189888999--899999999999852
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
. -.-|...|.+..|.+.+. -+.+.|..|++.|..
T Consensus 129 ~------------------~~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~ 164 (165)
T cd01865 129 G------------------RQLADQLGFEFFEASAKENINVKQVFERLVDIICD 164 (165)
T ss_pred H------------------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 9------------------99999869979997689890889999999999962
No 273
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=95.40 E-value=0.2 Score=27.93 Aligned_cols=100 Identities=14% Similarity=0.220 Sum_probs=57.8
Q ss_pred CCCHHHHH----HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHCCCEEEEECCC---------HHHH
Q ss_conf 87768899----99999999998198767538999565898752005-9999998489537990687---------9999
Q gi|254780725|r 305 SLDLAGLR----NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEIS-ISDFCAPLGITPSAIIPFD---------GAVF 370 (427)
Q Consensus 305 ~p~~~slr----~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~-~~~~~~~lg~~~~~~IP~D---------~~~~ 370 (427)
++++..++ |..+-++-+++.+ -++.+.+|++......|+. .+++++..|.+....=.|. -+.+
T Consensus 332 ~en~~al~~G~~NL~~Hi~N~~~fg---vpvVVAIN~F~~DT~~Ei~~i~~~~~~~G~~~av~~~~a~GG~Ga~~LA~~V 408 (524)
T cd00477 332 EENLEALEKGFANLRKHIENIKKFG---VPVVVAINKFSTDTDAELALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAV 408 (524)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHH
T ss_conf 6699999978766999998898628---9759995378998689999999999977996998062551551089999999
Q ss_pred HHHHHCCCCEE-EECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 99884796189-88899989999999999985221223
Q gi|254780725|r 371 GMSANSGKMIH-EVDPKSAIANLLVDFSRVLMGRVTVS 407 (427)
Q Consensus 371 ~~A~~~G~pi~-e~~p~s~~a~~~~~La~~i~gr~~~~ 407 (427)
.++..+..++- .+...-++.+-+..+|++|.|.....
T Consensus 409 v~~~~~~~~f~~lY~~~~~l~eKI~~IA~~IYgA~~V~ 446 (524)
T cd00477 409 IEACEQPSEFKFLYDLEDPLEDKIETIAKKIYGADGVE 446 (524)
T ss_pred HHHHCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 99860788866657999999999999999735988587
No 274
>PRK05973 replicative DNA helicase; Provisional
Probab=95.39 E-value=0.18 Score=28.22 Aligned_cols=45 Identities=16% Similarity=0.253 Sum_probs=34.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC
Q ss_conf 75379997469887756899999999996269949999787989860
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA 206 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~ 206 (427)
.|-.| +++++-|.|||+++.|+|+..++ .|+.|++.-+......+
T Consensus 63 PGDLI-IlAARPsMGKTafaLnla~~A~k-~g~~v~fFSLEM~~~ql 107 (237)
T PRK05973 63 PGDLV-LLGARPGQGKTLLGLELAVEAMK-SGRTGVFFTLEYTEKDV 107 (237)
T ss_pred CCCEE-EEECCCCCCHHHHHHHHHHHHHH-HCCCEEEEEECCCHHHH
T ss_conf 86779-99428988789999999999999-59966999615999999
No 275
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=95.37 E-value=0.045 Score=31.91 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=28.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67537999746988775689999999999626994999978798
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
+.|..++++| +-|.||||+.--|.-.+.-. ..++.+=+.|+.
T Consensus 26 ~~G~~vaivG-~sGsGKSTll~ll~gl~~p~-~G~I~i~g~di~ 67 (237)
T cd03252 26 KPGEVVGIVG-RSGSGKSTLTKLIQRFYVPE-NGRVLVDGHDLA 67 (237)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEECCEECC
T ss_conf 7999999999-99985999999996776579-878999999955
No 276
>pfam01268 FTHFS Formate--tetrahydrofolate ligase.
Probab=95.35 E-value=0.21 Score=27.84 Aligned_cols=89 Identities=15% Similarity=0.260 Sum_probs=52.6
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHCCCEEEEECCC---------HHHHHHHHHCC---CCE
Q ss_conf 9999999998198767538999565898752005-9999998489537990687---------99999988479---618
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEIS-ISDFCAPLGITPSAIIPFD---------GAVFGMSANSG---KMI 380 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~-~~~~~~~lg~~~~~~IP~D---------~~~~~~A~~~G---~pi 380 (427)
..+-++-+++.+ -++.+.+|++......|+. .+++++..|.+....=.|. -+.+.++.... +++
T Consensus 360 L~~Hi~N~~~fG---~pvVVAIN~F~~DT~~Ei~~i~~~~~~~g~~~~~s~~wa~GG~Ga~~LA~~Vv~~~~~~~~f~~l 436 (555)
T pfam01268 360 LEKHIENVKKFG---VPVVVAINRFPTDTDAELALVRELCEEAGAEAAVSEHWAKGGEGAIELAEAVVEACEKPSNFKPL 436 (555)
T ss_pred HHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHCCCCCCCCC
T ss_conf 999999999719---97699944789987999999999999869989994045405767699999999996088887665
Q ss_pred EEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 988899989999999999985221223
Q gi|254780725|r 381 HEVDPKSAIANLLVDFSRVLMGRVTVS 407 (427)
Q Consensus 381 ~e~~p~s~~a~~~~~La~~i~gr~~~~ 407 (427)
+...-++.+-+..+|++|.|.....
T Consensus 437 --Y~~~~~l~eKIe~IA~~IYGA~~V~ 461 (555)
T pfam01268 437 --YDLELSLEEKIETIATEIYGADGVE 461 (555)
T ss_pred --CCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf --7998899999999999715888577
No 277
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=95.25 E-value=0.037 Score=32.46 Aligned_cols=36 Identities=17% Similarity=0.230 Sum_probs=26.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67537999746988775689999999999626994999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLL 196 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlL 196 (427)
+.|+.|+++| +-|+||||++-=|...+.-.. .++.+
T Consensus 359 ~~Ge~vaiVG-~SGsGKSTL~~LL~gly~p~~-G~I~i 394 (585)
T PRK13657 359 KPGQTVAIVG-PTGAGKSTLINLLHRVFDPQS-GRIRI 394 (585)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHCCCCC-CCEEE
T ss_conf 5998899988-989869999999860157887-96758
No 278
>PRK07667 uridine kinase; Provisional
Probab=95.23 E-value=0.066 Score=30.88 Aligned_cols=44 Identities=11% Similarity=0.061 Sum_probs=33.5
Q ss_pred CCCCE-EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 56753-79997469887756899999999996269949999787989
Q gi|254780725|r 158 GSSGC-SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 158 ~~~gr-vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.+.+| +|++-| .+|+||||+|..|+..|.. .+.++.++-.|-..
T Consensus 10 ~~~~r~iIgIaG-~sgSGKTTla~~L~~~l~~-~~~~v~v~~~Dd~~ 54 (190)
T PRK07667 10 HKENRFILGIDG-LSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDHI 54 (190)
T ss_pred CCCCEEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC
T ss_conf 759869999779-8978899999999999866-59837999666242
No 279
>pfam00931 NB-ARC NB-ARC domain.
Probab=95.22 E-value=0.016 Score=34.72 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=20.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 75379997469887756899999999
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFS 185 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~ 185 (427)
.-+||+++| -||+||||+|..+-..
T Consensus 18 ~~~vI~I~G-~gGiGKTtLA~~v~~~ 42 (285)
T pfam00931 18 NLGVVGIVG-MGGVGKTTLAKQIYND 42 (285)
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHCC
T ss_conf 953999889-9956399999999716
No 280
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.22 E-value=0.038 Score=32.33 Aligned_cols=40 Identities=20% Similarity=0.305 Sum_probs=33.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 799974698877568999999999962699499997879898
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG 204 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g 204 (427)
+|++.| -.|+||||+|..|+..|.. .+.++.++-+|-..-
T Consensus 1 iIgIaG-~SgSGKTT~a~~L~~~l~~-~~~~~~vis~D~yy~ 40 (179)
T cd02028 1 VVGIAG-PSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCCC
T ss_conf 989989-8977899999999999846-488539995466645
No 281
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=95.21 E-value=0.23 Score=27.58 Aligned_cols=127 Identities=13% Similarity=0.147 Sum_probs=61.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
||+|+|+ =||||+-..||..+.. .|++|++- -|+.+++-....+. ..+...+ ...... ..+...
T Consensus 1 VIs~VGa---GGKTS~m~~LA~e~~~-~G~~VlvT------TTT~m~~P~~~~~~--~~~~~~d---~~~~~~-~~~~~~ 64 (232)
T TIGR03172 1 VIAFVGA---GGKTSTMFWLAAEYRK-EGYRVLVT------TTTRMFLPEPPLYD--YFLTSHD---GWVRDQ-VTKDTP 64 (232)
T ss_pred CEEEECC---CCHHHHHHHHHHHHHH-CCCCEEEE------CCCCCCCCCCCCCC--EEEECCH---HHHHHH-HHCCCC
T ss_conf 9899889---8799999999999987-69909998------89665678700166--2650625---777777-650466
Q ss_pred CE--EEEEC-CCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCC-------CCCHHHHHHHHHCCCCCCCCCCC
Q ss_conf 80--68724-87612032079999999899985128889973888-------88989999986201254357877
Q gi|254780725|r 243 NL--SILTA-PAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPH-------VWNSWTQEVLTLSDKVVITTSLD 307 (427)
Q Consensus 243 gL--~lL~a-~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~-------~~~~~~~~~L~~AD~vviV~~p~ 307 (427)
.. ...++ +..-.....++++.+..+.+ ...||+|+|-.-. .|..+-...-..+|.|+.|+..+
T Consensus 65 ~~~~~~~~~~~~~~~K~~g~~~e~~~~l~~--~~~~D~vLiEADGAk~~plKaP~~~EPvIP~~t~~VI~V~g~~ 137 (232)
T TIGR03172 65 RIAGIEFSALPRVSGKVRGFTPSTVDDLSD--FQHFDVILVEADGAKCRPLKAPSDHEPVIPKSSTTVIGVAGIS 137 (232)
T ss_pred CEEEEEEECCCCCCCCEECCCHHHHHHHHH--CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHH
T ss_conf 414579840577689551689999999984--5667789997576578816488989994788788899970577
No 282
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=95.21 E-value=0.23 Score=27.57 Aligned_cols=79 Identities=8% Similarity=0.024 Sum_probs=52.1
Q ss_pred CCCEEEECCCCCC------C-------HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 2888997388888------9-------89999986201254357877688999999999999819876753899956589
Q gi|254780725|r 274 IFPLVILDVPHVW------N-------SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 274 ~yd~VIiD~p~~~------~-------~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
.-.|.+||+..-- . .-+..++..||.+++|++.+..--.+=.+++..+.+.+ +.+.+|+|+++.
T Consensus 499 g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~~aI~~adVvllviDA~~git~QD~~Ia~~i~~~g---k~~IivvNKWDL 575 (714)
T PRK09518 499 GKDWLFVDTAGIRRKQKKLTGAEYYASLRTQAAIERCELALILFDASQPISEQDLRVMSMAVDAG---RALVLAFNKWDL 575 (714)
T ss_pred CEEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHC---CCEEEEEECHHC
T ss_conf 97899998600152443254322799999999886588999998677675289999999999859---937999961430
Q ss_pred CCCCHHHHHHHHHHHCC
Q ss_conf 87520059999998489
Q gi|254780725|r 341 PKKPEISISDFCAPLGI 357 (427)
Q Consensus 341 ~~~~~i~~~~~~~~lg~ 357 (427)
-.. ...+.+++.+..
T Consensus 576 v~~--~~~~~~~~~i~~ 590 (714)
T PRK09518 576 MDE--FRRQRLEREIDT 590 (714)
T ss_pred CCH--HHHHHHHHHHHH
T ss_conf 686--689999999997
No 283
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.18 E-value=0.23 Score=27.52 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 28889973888889--8999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-++|++.... ......+..+|.+++|.+. +..|+.+...+++.++.......++.+|-|+.+.....+++.++
T Consensus 48 ~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e 127 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREE 127 (164)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHH
T ss_conf 99999996799446647799883366536884368998999999999999998679998255116456856518799999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 9998489537990687999999884796189888999--899999999999852
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
.. .-|...|.+..|.+.+. -+.+.|..|++.+..
T Consensus 128 ~~------------------~~a~~~~~~~~e~SAk~~~~v~e~F~~l~~~i~k 163 (164)
T smart00175 128 AE------------------AFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HH------------------HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99------------------9999849979998316690889999999999971
No 284
>TIGR02012 tigrfam_recA protein RecA; InterPro: IPR001553 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response . In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs . RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage . RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved , , among eubacterial species. It is also found in the chloroplast of plants . RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, ß-strand 3, the loop C-terminal to ß-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and ß-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation [Lusetti and Cox, Annu. Rev. Biochem. 2002. 71:71-100.]. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between ß-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at ß-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at ß-strand 2 and the loop C-terminal to that strand, all of which are greater than 90
Probab=95.16 E-value=0.12 Score=29.25 Aligned_cols=46 Identities=20% Similarity=0.190 Sum_probs=36.8
Q ss_pred CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 345675379997469887756899999999996269949999787989
Q gi|254780725|r 156 GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 156 ~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
+.-+.||||=++|. --.||||+|.+.- +=++..|.-+..||....+
T Consensus 50 GG~P~GRi~EiYGp-ESsGKTTLal~~i-A~~Qk~Gg~~afiDAEHAl 95 (322)
T TIGR02012 50 GGLPKGRIIEIYGP-ESSGKTTLALHVI-AEAQKAGGVAAFIDAEHAL 95 (322)
T ss_pred CCCCCCEEEEEECC-CCCCHHHHHHHHH-HHHHHCCCEEEEEECHHHC
T ss_conf 98987507998548-9884789999999-9997439838998451303
No 285
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.15 E-value=0.038 Score=32.34 Aligned_cols=43 Identities=16% Similarity=0.278 Sum_probs=29.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-+.|..++++| +-|+||||+.--+.-.+.-..| .+.+=+.|+.
T Consensus 26 i~~Ge~vaivG-~sGsGKSTLl~ll~gl~~p~~G-~I~idg~~i~ 68 (229)
T cd03254 26 IKPGETVAIVG-PTGAGKTTLINLLMRFYDPQKG-QILIDGIDIR 68 (229)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCCCCC-EEEECCEECC
T ss_conf 87999999999-9998099999999668667873-8999999954
No 286
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=95.09 E-value=0.069 Score=30.77 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=23.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
+.|++++++| .-|+||||++--+.-.+.
T Consensus 38 ~~Ge~vaIvG-~sGsGKSTL~~ll~gl~~ 65 (226)
T cd03248 38 HPGEVTALVG-PSGSGKSTVVALLENFYQ 65 (226)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCC
T ss_conf 2999999999-999849999999964546
No 287
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=95.09 E-value=0.25 Score=27.34 Aligned_cols=111 Identities=14% Similarity=0.145 Sum_probs=73.2
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|.|++... .......+..+|.+++|.+ -+..|+.+...+++.+.+......++.+|-|+++......++.++
T Consensus 51 ~i~l~iwDt~G~e~~~~~~~~y~~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e 130 (167)
T cd01867 51 KIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEE 130 (167)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHH
T ss_conf 99999998999700116679985650588995568987999999999999998669997057642124502307799999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 9998489537990687999999884796189888999--899999999999852
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
.+ .-|...|.+..|.+.+. -+.+.|..|++.|..
T Consensus 131 ~~------------------~~a~~~~~~~~e~SAktg~nI~e~F~~l~~~i~~ 166 (167)
T cd01867 131 GE------------------ALADEYGIKFLETSAKANINVEEAFFTLAKDIKK 166 (167)
T ss_pred HH------------------HHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 99------------------9999809969998225790789999999999970
No 288
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=95.08 E-value=0.25 Score=27.33 Aligned_cols=117 Identities=14% Similarity=0.145 Sum_probs=91.3
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEE-EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHH-CCCC
Q ss_conf 0599983898999999988641100202237-3069989999998618998499998059876778899988853-2899
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMR-ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEV-CDSG 106 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~-v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~-~~p~ 106 (427)
++|..--+++.-..++..-.++ -+.. ....+..+|++.+...+ +++|+.|+.||.+||++...++++. ....
T Consensus 669 lrVLvVEDN~iN~~vi~~lL~~-----lG~~v~~A~nG~eAle~~~~~~-fDLILMDiqMP~MDG~eATr~IR~~~~~~~ 742 (920)
T PRK11107 669 LTVMAVDDNPANLKLIGALLEE-----QVEHVVLCDSGHQAVELAKQRP-FDLIFMDIQMPGMDGIRACELIRQLPHNQN 742 (920)
T ss_pred CEEEEECCCHHHHHHHHHHHHH-----CCCEEEEECCHHHHHHHHHCCC-CCEEEECCCCCCCCHHHHHHHHHHCCCCCC
T ss_conf 7499984889999999999998-----4988999899999999974799-978998899999989999999981867898
Q ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCC
Q ss_conf 808998168718999999976562643189998999997631023
Q gi|254780725|r 107 TKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFT 151 (427)
Q Consensus 107 ~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~ 151 (427)
+|||+++.+.-..--.+++.+|.+|||.||++..+|...+.+...
T Consensus 743 ~PIIAlTA~a~~~dre~cl~aGMddyLtKPI~~~~L~~~L~~~~~ 787 (920)
T PRK11107 743 TPIIAVTAHAMAGERERLLGAGMDDYLAKPIDEAALKQVLLRWKP 787 (920)
T ss_pred CEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHCC
T ss_conf 959999799898999999977999387287999999999998678
No 289
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=95.04 E-value=0.16 Score=28.48 Aligned_cols=28 Identities=21% Similarity=0.462 Sum_probs=22.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 675379997469887756899999999996
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIAS 188 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~ 188 (427)
+.| +++++| .-|+||||+.--+.+.+..
T Consensus 21 p~G-itaIvG-psGsGKSTLl~~i~~~lg~ 48 (197)
T cd03278 21 PPG-LTAIVG-PNGSGKSNIIDAIRWVLGE 48 (197)
T ss_pred CCC-EEEEEC-CCCCCHHHHHHHHHHHHCC
T ss_conf 898-289999-9999889999999987477
No 290
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.99 E-value=0.042 Score=32.12 Aligned_cols=54 Identities=26% Similarity=0.136 Sum_probs=36.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHH
Q ss_conf 799974698877568999999999962699499997879898603343899878988863
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAI 222 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l 222 (427)
||=|+| -.|+||||+|-.|.-.|.. .+.++.++|.|---. .|+.+..++..+-.
T Consensus 1 ViW~tG-LsgsGKTTlA~~l~~~L~~-~~~~~~~lDGD~iR~----~l~~~lgys~~~R~ 54 (149)
T cd02027 1 VIWLTG-LSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVRH----GLNKDLGFSREDRE 54 (149)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEECCHHHHH----HHCCCCCCCHHHHH
T ss_conf 989879-9999999999999999998-699759977488997----73655598878899
No 291
>PTZ00099 rab6; Provisional
Probab=94.98 E-value=0.27 Score=27.16 Aligned_cols=113 Identities=16% Similarity=0.150 Sum_probs=78.8
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 288899738888--8989999986201254357877-6889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++.. +......-...|+-+++|..-+ ..|+.+...+++.+.+....+.++.+|-|+.+......++.++
T Consensus 28 ~v~l~IWDTAGqE~f~sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~ee 107 (176)
T PTZ00099 28 PVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRKVTYEE 107 (176)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHH
T ss_conf 99999997998634135768870798679998504207789999999999998538877439998556558616859999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCC
Q ss_conf 9998489537990687999999884796189888999--89999999999985221
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRV 404 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~ 404 (427)
...-|...|.+..|.+.++ -+.+.|..||++|....
T Consensus 108 ------------------~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~~ 145 (176)
T PTZ00099 108 ------------------GMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNLD 145 (176)
T ss_pred ------------------HHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCHH
T ss_conf ------------------99999985999999848999498999999999860802
No 292
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=94.97 E-value=0.27 Score=27.14 Aligned_cols=109 Identities=9% Similarity=0.065 Sum_probs=70.4
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 28889973888889--8999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++..-. .....-+..++.+++|.+. +..|+.+...+++.++...+...++.+|-|+.+......++.++
T Consensus 51 ~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e 130 (165)
T cd01868 51 TIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEE 130 (165)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHH
T ss_conf 99999998999721267899873320514898626988999999999999998555773598702347868857888999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
. -.-|..+|-+..|.+.++ -+.+.|..|+++|
T Consensus 131 ~------------------~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i 164 (165)
T cd01868 131 A------------------KAFAEKNGLSFIETSALDGTNVEEAFKQLLTEI 164 (165)
T ss_pred H------------------HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf 9------------------999998599799967888929899999999986
No 293
>PRK07560 elongation factor EF-2; Reviewed
Probab=94.96 E-value=0.27 Score=27.12 Aligned_cols=18 Identities=6% Similarity=0.054 Sum_probs=10.0
Q ss_pred CCHHHHHHHHHHHHHCCC
Q ss_conf 799999998999851288
Q gi|254780725|r 259 FDEKMIVPVLDILEQIFP 276 (427)
Q Consensus 259 ~~~~~l~~ll~~l~~~yd 276 (427)
+.+-+++.+++.|++.|.
T Consensus 437 mGElHLei~~~rL~~~f~ 454 (730)
T PRK07560 437 MGELHLEVITYRIKRDYG 454 (730)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 289999999999999848
No 294
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.95 E-value=0.079 Score=30.41 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=32.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7537999746988775689999999999626994999978
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
.++-+.++| +.|+|||.+|+.+|..+. ..|.+|+.+..
T Consensus 104 ~~~nl~l~G-~~G~GKthLa~Ai~~~l~-~~g~sv~f~~~ 141 (254)
T COG1484 104 RGENLVLLG-PPGVGKTHLAIAIGNELL-KAGISVLFITA 141 (254)
T ss_pred CCCCEEEEC-CCCCCHHHHHHHHHHHHH-HCCCEEEEEEH
T ss_conf 588289989-999879999999999999-83984999885
No 295
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.92 E-value=0.13 Score=29.18 Aligned_cols=36 Identities=28% Similarity=0.316 Sum_probs=26.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67537999746988775689999999999626994999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLL 196 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlL 196 (427)
+.|..++++| .-|+||||+.--++-.+.-. ..++.+
T Consensus 26 ~~G~~vaIvG-~sGsGKSTLl~ll~gl~~p~-~G~i~i 61 (173)
T cd03246 26 EPGESLAIIG-PSGSGKSTLARLILGLLRPT-SGRVRL 61 (173)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEE
T ss_conf 5999999999-99980999999996666679-998999
No 296
>pfam07755 DUF1611 Protein of unknown function (DUF1611). This region is found in a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.
Probab=94.89 E-value=0.28 Score=27.01 Aligned_cols=247 Identities=17% Similarity=0.181 Sum_probs=140.9
Q ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCCCH-HHHHHHHHHHCCCCCEEEEEEC---CCCHHHHHHHHHCCCCEE-ECCCC
Q ss_conf 998999999861899849999805987677-8899988853289980899816---871899999997656264-31899
Q gi|254780725|r 63 GSIAEAVSCFSDSSTPDLIIVQTKVDSREV-LSALEPLAEVCDSGTKVIVIGD---TNDVSLYRALISNHVSEY-LIEPL 137 (427)
Q Consensus 63 g~~~~A~~~~~~~~~P~~iivd~~~~~~~~-~~~l~~la~~~~p~~~Vivig~---~~d~~l~r~l~r~Gv~dy-l~~P~ 137 (427)
+++.+|.+ ..|+.+|+-+...+..+ -+-...+.+....|..|+---+ .+|..+...+-+.|+.=+ +.+|-
T Consensus 24 ~sl~eA~~-----~g~~~liiGiA~~GG~lp~~w~~~i~~Ai~~GldIvsGLH~~L~ddp~l~~~A~~~g~~i~DvR~p~ 98 (302)
T pfam07755 24 SSLEEALA-----AGADTLIIGIAPSGGVLPEAWREVLLEALEAGLDVVSGLHEFLSDDPELAAAAKKHGVQIIDVRKPP 98 (302)
T ss_pred CCHHHHHH-----CCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEHHHHHHHHCCHHHHHHHHHCCCEEEEECCCC
T ss_conf 76999986-----6999899974168884898999999999982892623357775148989999998699799915899
Q ss_pred CHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCC
Q ss_conf 98999997631023322234567537999746988775689999999999626994999978798986033438998789
Q gi|254780725|r 138 SVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINS 217 (427)
Q Consensus 138 ~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~ 217 (427)
. + + .++.. ......+++|.++|.---+||=|.|..|..++-+ +|.++..+=- |-++++.. .+|
T Consensus 99 ~--~----~-~~~~g--~~~~~~~~rvl~vGTDcavGK~tTal~l~~~l~~-~Gi~a~fiaT----GQTGili~---g~G 161 (302)
T pfam07755 99 V--D----L-PVATG--KAREVKAKRVLTVGTDCAVGKMTTALELERALRE-RGLNAAFVAT----GQTGILIA---GYG 161 (302)
T ss_pred C--C----C-CCCCC--CCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEEC----CCCEEEEE---CCE
T ss_conf 9--8----8-65768--4014798789996057334078999999999997-7998479972----76136881---524
Q ss_pred HHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-----CHHHHH
Q ss_conf 888631845612433765320248980687248761203207999999989998512888997388888-----989999
Q gi|254780725|r 218 ISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-----NSWTQE 292 (427)
Q Consensus 218 l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-----~~~~~~ 292 (427)
+. +|.+ ..++-..+++.++-...+..|++||---.+. +..+..
T Consensus 162 v~--------iDav------------------------~~DFvaGavE~~v~~~~~~~d~iiIEGQgSL~hP~y~gvsl~ 209 (302)
T pfam07755 162 VP--------LDAV------------------------PADFVAGAVEALVLDAAEEDDWIVIEGQGSLSHPAYSGVTLG 209 (302)
T ss_pred EE--------ECCC------------------------HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCHH
T ss_conf 78--------4322------------------------476676789999986454678799916543236656654598
Q ss_pred HHHH--CCCCCCCCCCCH-----------HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCHHHHHHHHHHHCCC
Q ss_conf 9862--012543578776-----------8899999999999981987675389995658987-5200599999984895
Q gi|254780725|r 293 VLTL--SDKVVITTSLDL-----------AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDFCAPLGIT 358 (427)
Q Consensus 293 ~L~~--AD~vviV~~p~~-----------~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~-~~~i~~~~~~~~lg~~ 358 (427)
.|.. .|.+++...|.. +++...-++.+.+....++.+-+.+-+|..+... ......+++++.++.+
T Consensus 210 lL~Gs~Pd~lIL~H~p~R~~~~~~~~~~iP~l~~~i~l~e~~a~~~~~~kvvgIslNt~~l~~~ea~~~~~~~~~~~glP 289 (302)
T pfam07755 210 LLHGSQPDALVLCHRPGRKHRRGFPHYPLPPLEEEIELIEALAGTTPPAKVVGISLNTRGLSEAEAREAIERIEEELGLP 289 (302)
T ss_pred HHCCCCCCEEEEECCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 86078998699963789862278766889998999999999736479973999995578799999999999999998997
Q ss_pred EEEEE
Q ss_conf 37990
Q gi|254780725|r 359 PSAII 363 (427)
Q Consensus 359 ~~~~I 363 (427)
+.-.+
T Consensus 290 v~Dp~ 294 (302)
T pfam07755 290 VTDPV 294 (302)
T ss_pred EEECC
T ss_conf 47121
No 297
>KOG0744 consensus
Probab=94.89 E-value=0.13 Score=29.14 Aligned_cols=152 Identities=13% Similarity=0.096 Sum_probs=84.8
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHC---CCCEEEEECCCCCCCCHHHCCCCCC------CCHHHHHCCCCCHHH
Q ss_conf 7537999746988775689999999999626---9949999787989860334389987------898886318456124
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVF---AMETLLADLDLPYGTANINFDKDPI------NSISDAIYPVGRIDK 230 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~---~~~VlLvDlDl~~g~~~~~l~~~~~------~~l~d~l~~~~rlD~ 230 (427)
--|+|-+.| -.|+|||+++-.||..|+-+. -.+..+|..+.+ +--.-+|+-... +-|.|++...+.+=-
T Consensus 176 ~NRliLlhG-PPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinsh-sLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744 176 WNRLILLHG-PPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSH-SLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred EEEEEEEEC-CCCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEEHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEE
T ss_conf 414899857-999882279999987514652376444069997046-788988712113899999999999717896899
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHH
Q ss_conf 33765320248980687248761203207999999989998512888997388888989999986201254357877688
Q gi|254780725|r 231 AFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAG 310 (427)
Q Consensus 231 ~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~s 310 (427)
++++..-.-...+=...++...-+... -..++..-++.+++.-+++|+-+..-....-.+..+.||.+..|..|+..+
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIR--vVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744 254 VLIDEVESLAAARTSASSRNEPSDAIR--VVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred EEEHHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHHH
T ss_conf 980787888999875413799821899--999999989986047977999626267777888611754211038963999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780725|r 311 LRNSK 315 (427)
Q Consensus 311 lr~a~ 315 (427)
++...
T Consensus 332 i~~Il 336 (423)
T KOG0744 332 IYEIL 336 (423)
T ss_pred HHHHH
T ss_conf 99999
No 298
>TIGR00416 sms DNA repair protein RadA; InterPro: IPR004504 RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0006281 DNA repair.
Probab=94.85 E-value=0.1 Score=29.69 Aligned_cols=158 Identities=20% Similarity=0.257 Sum_probs=83.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH---HHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 53799974698877568999999999962699499997879898603---343899878988863184561243376532
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN---INFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~---~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
|-. -.+|+.-|+||||+-..++..||++ ..+||+|=..=...-+. .-|| +.+.....
T Consensus 103 Gsl-iLiGG~PG~GKSTLLLqV~~~LA~~-~~~~LYVsGEES~~Q~klRA~RLG------it~~~~~s------------ 162 (481)
T TIGR00416 103 GSL-ILIGGDPGIGKSTLLLQVACQLAKN-SMKVLYVSGEESLQQIKLRATRLG------ITDLVEPS------------ 162 (481)
T ss_pred CCE-EEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHCC------CCCCCCHH------------
T ss_conf 416-9846889963567899999998404-881689972301677888875455------32478702------------
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECC------------CCCCCH---HHHHHHHHC--CCC
Q ss_conf 024898068724876120320799999998999851288899738------------888898---999998620--125
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDV------------PHVWNS---WTQEVLTLS--DKV 300 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~------------p~~~~~---~~~~~L~~A--D~v 300 (427)
+..+|+.-|+....+.-..+.+-+.+...++.+ +|.++|||. |.+.+. .|..++..| +.|
T Consensus 163 -qaqdGinnlahdG~L~~L~Et~~e~I~~~~e~~--~P~~~ViDSIQ~ly~~di~SaPGSVsQVRE~t~~Lmr~AKt~~i 239 (481)
T TIGR00416 163 -QAQDGINNLAHDGNLYVLSETNLEQICAEIEEL--NPQVVVIDSIQTLYLPDISSAPGSVSQVRECTAELMRLAKTRGI 239 (481)
T ss_pred -HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH--CCCEEEEECCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -344324543026753215757989999999852--99489991421000000025888423888999999876521686
Q ss_pred --CCCC----CCCHHHHHHHHHHHHHHHHC-CCCC---CCCEEEEECCCCC
Q ss_conf --4357----87768899999999999981-9876---7538999565898
Q gi|254780725|r 301 --VITT----SLDLAGLRNSKNLIDVLKKL-RPAD---KPPYLVLNQVKTP 341 (427)
Q Consensus 301 --viV~----~p~~~slr~a~~ll~~l~~~-~~~~---~~~~iVlNr~~~~ 341 (427)
++|- +.+++.=|-..+++|..=-. +-.+ +-++=+=||+++.
T Consensus 240 aifiVGHVTKeGsiAGPkvLEH~vD~vLyfeGd~~~~~R~LRS~KNRFGat 290 (481)
T TIGR00416 240 AIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDRDSRFRILRSVKNRFGAT 290 (481)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHEECCCCCCCCCCHHHCCCCCCCCC
T ss_conf 579970043567543404666343311011588753444010001567873
No 299
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.82 E-value=0.11 Score=29.52 Aligned_cols=41 Identities=20% Similarity=0.338 Sum_probs=28.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
..|.+++++| +-|+||||+.--++-.+.-. ...+.+=+.|+
T Consensus 28 ~~Ge~v~ivG-~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i 68 (221)
T cd03244 28 KPGEKVGIVG-RTGSGKSSLLLALFRLVELS-SGSILIDGVDI 68 (221)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCEEC
T ss_conf 6998999999-99998999999996797189-84899999996
No 300
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.76 E-value=0.18 Score=28.17 Aligned_cols=68 Identities=18% Similarity=0.149 Sum_probs=41.8
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC---------CCHH-----HCCCCCCCCHHHHHC
Q ss_conf 56753799974698877568999999999962699499997879898---------6033-----438998789888631
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG---------TANI-----NFDKDPINSISDAIY 223 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g---------~~~~-----~l~~~~~~~l~d~l~ 223 (427)
-..|.+++++| ..|+||||++--++-...- ..-.+.+|...-.. .+.+ +--++|..++.+.+.
T Consensus 30 i~~Ge~lgivG-eSGsGKSTL~r~l~Gl~~p--~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~ 106 (252)
T COG1124 30 IERGETLGIVG-ESGSGKSTLARLLAGLEKP--SSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILS 106 (252)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHCCCCC--CCCEEEECCCCCCCCCCCHHHCCCEEEEECCCCCCCCCCHHHHHHHH
T ss_conf 64897899984-8989888999999565678--88628988840576653033304506995187224684101989974
Q ss_pred CCCCH
Q ss_conf 84561
Q gi|254780725|r 224 PVGRI 228 (427)
Q Consensus 224 ~~~rl 228 (427)
.+-+.
T Consensus 107 Epl~~ 111 (252)
T COG1124 107 EPLRP 111 (252)
T ss_pred HHHCC
T ss_conf 24303
No 301
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.70 E-value=0.13 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.406 Sum_probs=27.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|..|+++| +-|+||||+.--|.-.+.-. ..++.+=+.|+
T Consensus 27 ~~G~~iaIvG-~sGsGKSTLl~ll~gl~~p~-~G~I~idg~~i 67 (238)
T cd03249 27 PPGKTVALVG-SSGCGKSTVVSLLERFYDPT-SGEILLDGVDI 67 (238)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHCCCCC-CCEEEECCEEC
T ss_conf 6999999999-99998999999982386188-51899999992
No 302
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=94.69 E-value=0.042 Score=32.12 Aligned_cols=29 Identities=14% Similarity=0.182 Sum_probs=23.7
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 567537999746988775689999999999
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
-+.|..|+++| +-|+||||+.--+.-.+-
T Consensus 60 I~~Ge~vaIVG-~sGSGKSTLl~lL~gl~~ 88 (282)
T cd03291 60 IEKGEMLAITG-STGSGKTSLLMLILGELE 88 (282)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCC
T ss_conf 84999999999-999819999999957872
No 303
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=94.69 E-value=0.069 Score=30.79 Aligned_cols=38 Identities=29% Similarity=0.322 Sum_probs=26.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6753799974698877568999999999962699499997
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
..|..|+++| +-|+||||+.--+.-.+.-. ...+.+=+
T Consensus 28 ~~G~~v~ivG-~sGsGKSTLl~ll~gl~~p~-~G~I~i~g 65 (220)
T cd03245 28 RAGEKVAIIG-RVGSGKSTLLKLLAGLYKPT-SGSVLLDG 65 (220)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEECC
T ss_conf 7999999999-99985999999996725478-65899999
No 304
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.68 E-value=0.28 Score=27.01 Aligned_cols=28 Identities=25% Similarity=0.321 Sum_probs=22.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
+.|.+|+++| .-|+||||+.-.++-.+.
T Consensus 348 ~~Ge~iaivG-~NGsGKSTLlk~l~G~~~ 375 (556)
T PRK11819 348 PPGGIVGIIG-PNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCC
T ss_conf 7882478988-987758899999838656
No 305
>PRK12740 elongation factor G; Reviewed
Probab=94.68 E-value=0.21 Score=27.87 Aligned_cols=17 Identities=18% Similarity=0.235 Sum_probs=7.4
Q ss_pred CHHHHHHHHHHHHHCCC
Q ss_conf 99999998999851288
Q gi|254780725|r 260 DEKMIVPVLDILEQIFP 276 (427)
Q Consensus 260 ~~~~l~~ll~~l~~~yd 276 (427)
.+-+++.+++.|++.|.
T Consensus 436 GElHLei~l~~Lr~~f~ 452 (670)
T PRK12740 436 GELHLEVALERLKRKYG 452 (670)
T ss_pred CHHHHHHHHHHHHHHHC
T ss_conf 98999999999989869
No 306
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.071 Score=30.68 Aligned_cols=125 Identities=18% Similarity=0.169 Sum_probs=61.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC------HHHCCCCC---CCCHHHHH--CCCCC
Q ss_conf 675379997469887756899999999996269949999787989860------33438998---78988863--18456
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA------NINFDKDP---INSISDAI--YPVGR 227 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~------~~~l~~~~---~~~l~d~l--~~~~r 227 (427)
+.|+.++++| +.|+||||+..-++-.++-.. ....+=|.|+..=+. -.+.+++| ..++.|-+ ..++.
T Consensus 345 ~~g~~talvG-~SGaGKSTLl~lL~G~~~~~~-G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireNi~l~~~~~ 422 (559)
T COG4988 345 KAGQLTALVG-ASGAGKSTLLNLLLGFLAPTQ-GEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDA 422 (559)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCCC-CEEEECCCCCCCCCHHHHHHHEEEECCCCCCCCCCHHHHHHCCCCCC
T ss_conf 4896799988-999978999999847577778-44888993100068778886724627998405641887773168767
Q ss_pred --------HHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHH--HHHHHHCCCEEEECCCCC-CCHHH
Q ss_conf --------1243376532024898068724876120320799999998--999851288899738888-89899
Q gi|254780725|r 228 --------IDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPV--LDILEQIFPLVILDVPHV-WNSWT 290 (427)
Q Consensus 228 --------lD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~l--l~~l~~~yd~VIiD~p~~-~~~~~ 290 (427)
++.+-+...+.. ++||+-.-+.. ...++.+..+++ -..+-..-+++++|=|.. .+..+
T Consensus 423 s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~----G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~et 491 (559)
T COG4988 423 SDEEIIAALDQAGLLEFVPK-PDGLDTVIGEG----GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491 (559)
T ss_pred CHHHHHHHHHHHCHHHHHCC-CCCCCCCCCCC----CCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCCCCHHH
T ss_conf 89999999998257876167-77643302158----88778999999999998558888898548756798767
No 307
>PRK04328 hypothetical protein; Provisional
Probab=94.63 E-value=0.1 Score=29.68 Aligned_cols=44 Identities=11% Similarity=0.110 Sum_probs=36.0
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5675379997469887756899999999996269949999787989
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-+.|.++.+.| .-|+|||++|.++++.-++ .|.+++++-++-..
T Consensus 21 lp~gs~~Lv~G-~pGtGKT~la~qFl~~g~~-~GE~~lyis~eE~~ 64 (250)
T PRK04328 21 IPERNVVLLSG-GPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHP 64 (250)
T ss_pred CCCCEEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEEECCH
T ss_conf 87996999982-8999989999999999987-69977999972799
No 308
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.60 E-value=0.066 Score=30.90 Aligned_cols=177 Identities=16% Similarity=0.080 Sum_probs=76.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHH---HCCCCCHHHHHHHHHHHC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886---318456124337653202
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDA---IYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~---l~~~~rlD~~~l~~~l~~ 239 (427)
+|++.| ..|+||||+|-.|+..| .+.+|+++.+|-..-+. .+..-.... ...|+-+|-.++...+..
T Consensus 1 iIgI~G-~sgsGKTT~a~~L~~~l---~~~~v~~i~~D~yy~~~------~~~~~~~~~~~~fd~p~a~d~~~l~~~L~~ 70 (198)
T cd02023 1 IIGIAG-GSGSGKTTVAEEIIEQL---GNPKVVIISQDSYYKDL------SHEELEERKNNNYDHPDAFDFDLLISHLQD 70 (198)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHH---CCCCEEEEECCCCCCCC------CCCCHHHHCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 989889-99885999999999980---99985899788888798------604387843678789226449999999999
Q ss_pred CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 489806872487612032079999999899985128889973888889-8999998620125435787768899999999
Q gi|254780725|r 240 YAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNSKNLI 318 (427)
Q Consensus 240 ~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a~~ll 318 (427)
...|-.+-. ..+++.......-...+ ...++||++--..+. +..+ ...|..+.+-.+ ..+|-.+|+.
T Consensus 71 L~~g~~i~~------p~Yd~~t~~r~~~~~~i-~~~~iiIvEGi~~l~~~~lr---~~~D~kIfid~~--~d~rl~Rri~ 138 (198)
T cd02023 71 LKNGKSVEI------PVYDFKTHSRLKETVTV-YPADVIILEGILALYDKELR---DLMDLKIFVDTD--ADVRLIRRIE 138 (198)
T ss_pred HHCCCCCCC------CCEECCCCCCCCCCEEE-CCCCEEEEECHHHCCCHHHH---HHHHCEEEEECC--HHHHHHHHHH
T ss_conf 864897612------31003457546772796-58865998253430688888---674023786178--9999999998
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 999981987675389995658987520059999998489537990687
Q gi|254780725|r 319 DVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFD 366 (427)
Q Consensus 319 ~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D 366 (427)
.-..+.+.... -|++++....+ ...+.|-+......+.+||+.
T Consensus 139 RD~~eRg~~~~---~v~~~~~~~v~--p~~~~~i~P~k~~ADlIi~~~ 181 (198)
T cd02023 139 RDIVERGRDLE---SVINQYLKFVK--PMHEQFIEPTKRYADVIIPRG 181 (198)
T ss_pred HHHHHHCCCHH---HHHHHHHHHHH--HHHHHHCCCCHHCCCEEECCC
T ss_conf 76988589999---99999998607--879986524151473897899
No 309
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=94.59 E-value=0.34 Score=26.55 Aligned_cols=64 Identities=19% Similarity=0.256 Sum_probs=43.1
Q ss_pred HCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 765626431899989999976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 126 SNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 126 r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
.....|+--.|....++-+.+..-+. .|-+| .+|..-|+||||+-..++..+|.+ + +|++|--.
T Consensus 66 ~i~~~~~~Ri~tg~~EldRVLGGG~V--------~Gs~i-LIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGE 129 (456)
T COG1066 66 DIELEEEPRISTGIEELDRVLGGGLV--------PGSVI-LIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGE 129 (456)
T ss_pred CCEEEECCCCCCCHHHHHHHHCCCCC--------CCCEE-EECCCCCCCHHHHHHHHHHHHHHC-C-CEEEEECC
T ss_conf 01122224235781888765367723--------66179-973689877989999999998705-9-57999677
No 310
>PRK12739 elongation factor G; Reviewed
Probab=94.56 E-value=0.34 Score=26.51 Aligned_cols=37 Identities=14% Similarity=0.282 Sum_probs=14.3
Q ss_pred HHHHHHHHCCCCCCEEEEECCCC--CCCHHHHHHHHHHHC
Q ss_conf 99999986189984999980598--767788999888532
Q gi|254780725|r 66 AEAVSCFSDSSTPDLIIVQTKVD--SREVLSALEPLAEVC 103 (427)
Q Consensus 66 ~~A~~~~~~~~~P~~iivd~~~~--~~~~~~~l~~la~~~ 103 (427)
...+.+....-.|-++++- .++ ..+.-..++++.+..
T Consensus 117 ~~v~rqa~~~~lp~il~iN-KiDR~~ad~~~~~~~i~~~l 155 (693)
T PRK12739 117 ETVWRQADKYGVPRIVFVN-KMDRIGADFFRVVEQIKDRL 155 (693)
T ss_pred HHHHHHHHHCCCCEEEEEE-CCCCCCCCHHHHHHHHHHHH
T ss_conf 9999999986989699997-97889999899999999985
No 311
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=94.52 E-value=0.11 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5675379997469887756899999999996269949999787989
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-+.|.++.+.| .-|+|||++|..+++.-+.+.|.+|+++-++-..
T Consensus 16 i~~gs~~LI~G-~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~ 60 (231)
T pfam06745 16 IPEGRVVLITG-GPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPP 60 (231)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 82996999985-8972599999999999998658968999813799
No 312
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.52 E-value=0.35 Score=26.44 Aligned_cols=51 Identities=20% Similarity=0.315 Sum_probs=33.9
Q ss_pred EEECCCCCHHHH------HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 643189998999------997631023322234567537999746988775689999999999
Q gi|254780725|r 131 EYLIEPLSVADI------INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 131 dyl~~P~~~~~l------~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
|..+.|-+..++ .+.+.+.+. .+|...-+-|.|. -|+||||+|-.+|..|-
T Consensus 14 ~g~p~Pr~~~~liGq~~~~~~L~~a~~-----~gRl~HA~Lf~GP-~GiGKaTlA~~~A~~Ll 70 (352)
T PRK09112 14 DGVPSPSENNRLFGHEEARAFLAQAYR-----EGRLHHALLFEGP-EGIGKATLAFHLANHIL 70 (352)
T ss_pred CCCCCCCCHHHHCCHHHHHHHHHHHHH-----CCCCCCEEEEECC-CCCCHHHHHHHHHHHHH
T ss_conf 999896446462786999999999998-----4996524653589-98089999999999986
No 313
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=94.48 E-value=0.36 Score=26.39 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--98999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++... .......+..||.+++|.+. +..|+.+++.+++.+++...+..++.+|-|+.+......++.++
T Consensus 49 ~v~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e 128 (163)
T cd01860 49 TVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEE 128 (163)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHH
T ss_conf 99999997999710027889885167714999818997999999999999998559872367755335756508999999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
.. .-|...|-+..|.+.+. -+.+.|..|+++|
T Consensus 129 ~~------------------~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i 162 (163)
T cd01860 129 AQ------------------EYADENGLLFFETSAKTGENVNELFTEIAKKL 162 (163)
T ss_pred HH------------------HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99------------------99998299799986265907899999999858
No 314
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=94.47 E-value=0.36 Score=26.38 Aligned_cols=10 Identities=10% Similarity=0.398 Sum_probs=4.4
Q ss_pred EEEECCCCCC
Q ss_conf 8997388888
Q gi|254780725|r 277 LVILDVPHVW 286 (427)
Q Consensus 277 ~VIiD~p~~~ 286 (427)
.-|..+|+..
T Consensus 484 pfvmELPpYr 493 (772)
T PRK09554 484 PFVMELPVYH 493 (772)
T ss_pred CCEEECCCCC
T ss_conf 7477379878
No 315
>PRK06217 hypothetical protein; Validated
Probab=94.44 E-value=0.31 Score=26.80 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=80.0
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
+.|.|+| -+|.||||++..||..+ +.+ .+|+|-.+ .+.-+|+++.
T Consensus 2 ~rI~i~G-~sGsGkSTla~~La~~l----~~~--~~~lD~~~-----W~p~~~pf~~----------------------- 46 (185)
T PRK06217 2 MRIHITG-ASGSGTTTLGAALAEAL----DLP--HLDTDDFF-----WLPTDPPFTT----------------------- 46 (185)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHH----CCC--EEECCCCE-----ECCCCCCCCC-----------------------
T ss_conf 6799978-99887899999999975----989--68645553-----5689997564-----------------------
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 98068724876120320799999998999851288899738888898999998620125435787768899999999999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL 321 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l 321 (427)
..-.++....+...+...=.+|+ | .....|....+..+|.||.+..|..-.+...++ ...
T Consensus 47 ---------------kR~~~eR~~ll~~~~~~~~~WV~-s--Gs~~~wgd~l~p~~DlvVfL~lP~~irl~Rlr~--RE~ 106 (185)
T PRK06217 47 ---------------KREPEERLRLLLEDLRDSEGWIL-S--GSLLGWGDPLEPLFDLVVFLYIPPELRLERLRL--REE 106 (185)
T ss_pred ---------------CCCHHHHHHHHHHHHHCCCCEEE-E--CCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHH--HHH
T ss_conf ---------------37999999999998637999899-5--775232321134356899982898999999999--999
Q ss_pred HHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCC-HHHH-HHHHHCCCCEEEECCCCHHHHHHHHHHHH
Q ss_conf 981987675389995658987520059999998489537990687-9999-99884796189888999899999999999
Q gi|254780725|r 322 KKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFD-GAVF-GMSANSGKMIHEVDPKSAIANLLVDFSRV 399 (427)
Q Consensus 322 ~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D-~~~~-~~A~~~G~pi~e~~p~s~~a~~~~~La~~ 399 (427)
. +++++ ..+...-+..-.+|-+-....-....+-. -+.. ........|++..+...++.+-+..+.+.
T Consensus 107 ~--RyG~r--------i~pgGdm~~~~~~Fl~Wa~~YD~~~~~gRsl~~He~Wl~~~~cPVlrldg~~~~~~~~~~vl~~ 176 (185)
T PRK06217 107 Q--RYGNR--------ILPGGDMHKASLEFLEWAAQYDNAGPEGRSLAAHEQWLADQSCPVLRLDGDLTVEERLAQVLAA 176 (185)
T ss_pred H--HCCCC--------CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHH
T ss_conf 8--60786--------6899418888899999998678898776449999999952898679976989899999999999
Q ss_pred HH
Q ss_conf 85
Q gi|254780725|r 400 LM 401 (427)
Q Consensus 400 i~ 401 (427)
+.
T Consensus 177 ~~ 178 (185)
T PRK06217 177 LN 178 (185)
T ss_pred HH
T ss_conf 74
No 316
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.42 E-value=0.37 Score=26.31 Aligned_cols=119 Identities=13% Similarity=0.205 Sum_probs=74.5
Q ss_pred CCCCCEEEEECCCCCCCHHHHHHHHH-------HHCCCCCEEEEEECCCC----HH--------------HHHHHHHCCC
Q ss_conf 89984999980598767788999888-------53289980899816871----89--------------9999997656
Q gi|254780725|r 75 SSTPDLIIVQTKVDSREVLSALEPLA-------EVCDSGTKVIVIGDTND----VS--------------LYRALISNHV 129 (427)
Q Consensus 75 ~~~P~~iivd~~~~~~~~~~~l~~la-------~~~~p~~~Vivig~~~d----~~--------------l~r~l~r~Gv 129 (427)
.....-++.|..+- .++ ++|.+|. ....|.-+|||||..-+ +. +-.| +|.|+
T Consensus 77 ~~~~~~~v~da~~~-~~~-~~l~~~~~~~~~~~r~l~~~~rvvv~g~~p~~~~~~~~~~a~~~legf~rs~~ke-~~~g~ 153 (447)
T PRK08261 77 GDKFGALVFDATGI-TDP-EELKQLYEFFHPLLRNLAPCGRVVVLGRPPETAADPAQAIAQRALEGFTRSLGKE-LRRGA 153 (447)
T ss_pred CCCCCEEEEECCCC-CCH-HHHHHHHHHHHHHHHHCCCCCEEEEECCCCHHCCCHHHHHHHHHHHHHHHHHHHH-HHCCC
T ss_conf 77633699977789-998-9999999999999873377760899437802237999999998777889989999-72684
Q ss_pred CEEE--CCCCCHHHHHHHHHHCCCCCC--------------------CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 2643--189998999997631023322--------------------234567537999746988775689999999999
Q gi|254780725|r 130 SEYL--IEPLSVADIINSISAIFTPQE--------------------EGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 130 ~dyl--~~P~~~~~l~~ai~~~~~~~~--------------------~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
.--| +.|-....+..+++-++.+.. -.++=.||+..|+|+..|+|+. +|..||
T Consensus 154 t~~l~~v~~~~~~~~~~~lrf~ls~~sa~v~gq~~~v~~~~~~~~~~~~~pL~GKVALVTGAArGIG~A-----IA~~LA 228 (447)
T PRK08261 154 TAQLVYVAPGAETGLESTLRFFLSPRSAYVSGQVVRVGAADAAPPADWDRPLAGKVALVTGAARGIGAA-----IAEVLA 228 (447)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCHHHHH-----HHHHHH
T ss_conf 367999788840011552424406663311253899638988898887888999989991725789999-----999999
Q ss_pred HHCCCCEEEEECCCC
Q ss_conf 626994999978798
Q gi|254780725|r 188 SVFAMETLLADLDLP 202 (427)
Q Consensus 188 ~~~~~~VlLvDlDl~ 202 (427)
+ .|.+|+++|.+-.
T Consensus 229 r-eGA~VVi~Di~~a 242 (447)
T PRK08261 229 R-DGAHVVCLDVPQA 242 (447)
T ss_pred H-CCCEEEEEECCHH
T ss_conf 8-6999999827114
No 317
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=94.41 E-value=0.12 Score=29.25 Aligned_cols=66 Identities=20% Similarity=0.245 Sum_probs=42.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC--CCCCC------------CHHHCCCCCCCCHHHHHCC
Q ss_conf 675379997469887756899999999996269949999787--98986------------0334389987898886318
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD--LPYGT------------ANINFDKDPINSISDAIYP 224 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD--l~~g~------------~~~~l~~~~~~~l~d~l~~ 224 (427)
+.|.+++++| ..|+||||+|--++-.+-- .+..+.+.+-| +..+. .+.+..++|..++.+.+..
T Consensus 315 ~~GE~lglVG-eSGsGKSTlar~i~gL~~P-~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 315 REGETLGLVG-ESGSGKSTLARILAGLLPP-SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCCHHHHHHHHEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 3887899988-9999989999999487788-8844999276556552314552420379996762336700069999874
Q ss_pred CC
Q ss_conf 45
Q gi|254780725|r 225 VG 226 (427)
Q Consensus 225 ~~ 226 (427)
+-
T Consensus 393 pL 394 (539)
T COG1123 393 PL 394 (539)
T ss_pred HH
T ss_conf 78
No 318
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.40 E-value=0.15 Score=28.76 Aligned_cols=40 Identities=10% Similarity=0.084 Sum_probs=35.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 379997469887756899999999996269949999787989
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.||+|+| ..|+||||+...|--.|.. +|.+|..|-.+.+.
T Consensus 3 Pii~ivG-~s~SGKTTLi~kli~~l~~-~G~rV~~IKH~~H~ 42 (170)
T PRK10751 3 PLLAIAA-WSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD 42 (170)
T ss_pred CEEEEEE-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf 7799994-6999999999999999998-79849999457778
No 319
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.13 Score=29.03 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-+.|..|+++| +-|+||||+.--+.-.+.-. ...+.+=+.|..
T Consensus 25 i~~Ge~i~IvG-~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~ 67 (234)
T cd03251 25 IPAGETVALVG-PSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVR 67 (234)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEECCEECC
T ss_conf 87999999998-99982999999996676678-868999999966
No 320
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=94.36 E-value=0.38 Score=26.23 Aligned_cols=109 Identities=12% Similarity=0.143 Sum_probs=70.3
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++... .......+..||.+++|.+ -+..|+.+...+++.++....+..++.+|-|+.+.....+++.++
T Consensus 48 ~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e 127 (161)
T cd04113 48 RVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLE 127 (161)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCHHH
T ss_conf 99999998999701226789984057778995368988999999999999998679996498603434400037889999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
. + .-|..+|-+..|.+.+. -+-+.|.+||++|
T Consensus 128 ~----------------~--~~a~~~~~~~~E~SAk~~~nV~e~F~~la~~i 161 (161)
T cd04113 128 A----------------S--RFAQENGLLFLETSALTGENVEEAFLKCARSI 161 (161)
T ss_pred H----------------H--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9----------------9--99998599799974156905899999999709
No 321
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=94.33 E-value=0.15 Score=28.67 Aligned_cols=67 Identities=13% Similarity=0.175 Sum_probs=49.0
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHH-------HHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 1288899738888--89899999862012543578776889-------999999999998198767538999565898
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGL-------RNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~sl-------r~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
..+.+.++|+|.. +...+...+..+|..++|+...-... ..+++.+..++.++. +.+-+++|+++..
T Consensus 75 ~~~~~~iiDtPGH~df~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGi--k~iIVavNKMD~v 150 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGV--KQLIVAVNKMDDV 150 (219)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCC--CEEEEEEECCCCC
T ss_conf 993699987897266788999877531668999985767510366777659999999998499--7489999875368
No 322
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.11 Score=29.56 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=29.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-+.|..++++| +-|+||||+.--|.-.+.-. ..++.+=+.|+.
T Consensus 24 i~~Ge~v~ivG-~sGsGKSTLl~ll~gl~~p~-~G~I~idg~di~ 66 (236)
T cd03253 24 IPAGKKVAIVG-PSGSGKSTILRLLFRFYDVS-SGSILIDGQDIR 66 (236)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHCCCCCCC-CCEEEECCEECC
T ss_conf 86999999999-99998999999974385488-748999999923
No 323
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=94.33 E-value=0.38 Score=26.18 Aligned_cols=47 Identities=23% Similarity=0.337 Sum_probs=31.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---CC------CCEEEEECCCCCCCC
Q ss_conf 6753799974698877568999999999962---69------949999787989860
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASV---FA------METLLADLDLPYGTA 206 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~---~~------~~VlLvDlDl~~g~~ 206 (427)
+.| +..++-+-||+||||++.-|..+|+.- .| .+|++|-+.+.-.++
T Consensus 87 r~g-~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~ 142 (402)
T COG3598 87 RKG-YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDI 142 (402)
T ss_pred HCC-EEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHHHH
T ss_conf 517-05898448862376899999999986477745335588807999822686889
No 324
>pfam08419 consensus
Probab=94.32 E-value=0.05 Score=31.61 Aligned_cols=65 Identities=25% Similarity=0.361 Sum_probs=41.9
Q ss_pred CCCHHHHHHHHHCCCCEEE----CCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHH
Q ss_conf 8718999999976562643----18999899999763102332223456753799974698877568999999
Q gi|254780725|r 115 TNDVSLYRALISNHVSEYL----IEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCA 183 (427)
Q Consensus 115 ~~d~~l~r~l~r~Gv~dyl----~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA 183 (427)
..|+.+||+.+...+.+=+ .+|++.......+..++.. .| . .-.||=|+|..||.||||.|-.|-
T Consensus 28 ~e~P~~yrR~~a~~~~~e~~~~~~~~~~lk~WQ~~l~~~l~~-~P-d--dRtI~Wvygp~GgeGKStfak~L~ 96 (116)
T pfam08419 28 LEDPSTYRRCLARKAMEEFRKEAAWPLDLRPWQDEVESLLEE-EP-D--DRTIIWVYGPNGGEGKSTFAKHLG 96 (116)
T ss_pred HHCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHC-CC-C--CCEEEEEECCCCCCCHHHHHHHHH
T ss_conf 307158889999871899987512667651699999999836-99-8--746999985899866428888642
No 325
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=94.31 E-value=0.21 Score=27.82 Aligned_cols=41 Identities=24% Similarity=0.353 Sum_probs=28.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|+.++++| .-|+||||++.-|...+--. ..++.+=+-|+
T Consensus 365 ~~Ge~vaiVG-~SGsGKSTL~~LL~r~ydp~-~G~I~idG~di 405 (575)
T PRK11160 365 KAGEKVALLG-RTGCGKSTLLQLLTRAWDPQ-QGEILLNGQPI 405 (575)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCEEC
T ss_conf 6998899988-99975999999986236789-98899998975
No 326
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=94.24 E-value=0.4 Score=26.08 Aligned_cols=110 Identities=20% Similarity=0.204 Sum_probs=65.3
Q ss_pred CCEEEECCCCCCCHHHHHHHH-HCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 888997388888989999986-2012543578-776889999999999998198-7675389995658987520059999
Q gi|254780725|r 275 FPLVILDVPHVWNSWTQEVLT-LSDKVVITTS-LDLAGLRNSKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISISDF 351 (427)
Q Consensus 275 yd~VIiD~p~~~~~~~~~~L~-~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~~~~ 351 (427)
+...++|++..-.......+. .+|.+++|-. -+..|+.++..+...+++... ...++.+|-|+.+....-+++.++
T Consensus 50 ~~l~i~Dt~g~e~~~~~~~~~~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eE- 128 (221)
T cd04148 50 STLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQE- 128 (221)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHH-
T ss_conf 8999998987312666656530686899999646677888899999999986489995199985356668638999999-
Q ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHHHHC
Q ss_conf 99848953799068799999988479618988899--9899999999999852
Q gi|254780725|r 352 CAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPK--SAIANLLVDFSRVLMG 402 (427)
Q Consensus 352 ~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~--s~~a~~~~~La~~i~g 402 (427)
.+ .-|...|-+..|.+.+ +-+.+.|..|++.|-.
T Consensus 129 ---------------g~--~~A~~~~~~F~EtSAk~~~NV~elF~~lvrqIrl 164 (221)
T cd04148 129 ---------------GR--ACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRL 164 (221)
T ss_pred ---------------HH--HHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf ---------------99--9999859989994579994989999999999985
No 327
>PRK09519 recA recombinase A; Reviewed
Probab=94.24 E-value=0.4 Score=26.07 Aligned_cols=12 Identities=17% Similarity=0.348 Sum_probs=5.4
Q ss_pred CCEEEEECCCCC
Q ss_conf 538999565898
Q gi|254780725|r 330 PPYLVLNQVKTP 341 (427)
Q Consensus 330 ~~~iVlNr~~~~ 341 (427)
+..+|.|++.+|
T Consensus 684 ~~~vv~~k~spP 695 (790)
T PRK09519 684 AEGVVVHNCSPP 695 (790)
T ss_pred EEEEEECCCCCC
T ss_conf 333343266897
No 328
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=94.20 E-value=0.056 Score=31.33 Aligned_cols=25 Identities=44% Similarity=0.545 Sum_probs=21.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 3799974698877568999999999
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
.+|-.+|+-.||||||+|..||..|
T Consensus 92 pliILigGtsGvGKSTlA~~LA~rL 116 (306)
T PRK04220 92 PIIILIGGASGVGTSTIAFELASRL 116 (306)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 8799985899887899999999970
No 329
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=94.20 E-value=0.033 Score=32.72 Aligned_cols=33 Identities=21% Similarity=0.420 Sum_probs=27.9
Q ss_pred CCCCCE-EEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 456753-7999746988775689999999999626
Q gi|254780725|r 157 KGSSGC-SISFIGSRGGVGSSTIAHNCAFSIASVF 190 (427)
Q Consensus 157 ~~~~gr-vIav~g~KGGvGkTTiA~nLA~~LA~~~ 190 (427)
..-.|+ |++|+| =-|||||+||-++|-+|.+..
T Consensus 445 ~~~~GpqIlClvG-PPGVGKTSlg~SIA~ALnRkF 478 (941)
T TIGR00763 445 GKMKGPQILCLVG-PPGVGKTSLGKSIAKALNRKF 478 (941)
T ss_pred CCCCCCEEEEEEC-CCCCCHHHHHHHHHHHHCCEE
T ss_conf 7888876787207-269542227899999968804
No 330
>PRK08181 transposase; Validated
Probab=94.19 E-value=0.28 Score=26.99 Aligned_cols=117 Identities=15% Similarity=0.222 Sum_probs=66.6
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCE--------
Q ss_conf 306998999999861899849999805987677889998885328998089981687189999999765626--------
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSE-------- 131 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~d-------- 131 (427)
.+..|++++.+.+..++.- +.....+.|..|.+.. +.....-.+-|.+.++|...
T Consensus 19 LkL~~~~~~~~~~~~~a~~---------~~~s~~e~L~~Lle~E--------~~~R~~rr~~rrlk~A~fp~~ktLe~fD 81 (269)
T PRK08181 19 LRLPTIKTLWPQFAEQADK---------EGWPAARFLAAIAEHE--------IAERARRRIERHLAEAHLPPGKTLDSFD 81 (269)
T ss_pred CCCHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 6852899999999999987---------5999999999999999--------9999999999999868979988865478
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 431899989999976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 132 YLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 132 yl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
|=..|--....+..+... ..--+.+.-|.++| .-|+|||.+|+.|+....+ .|.+|..+.++
T Consensus 82 f~~~p~i~~~~i~~L~~~-----~~fi~~~~Nvil~G-p~GtGKThLA~Alg~~A~~-~G~~V~f~~~~ 143 (269)
T PRK08181 82 FEAVPMISKAQVMALAAG-----DSWLAKGANLLLFG-PPGGGKSHLAAAIGLALIE-NGWRVLFTRTT 143 (269)
T ss_pred CCCCCCCCHHHHHHHHCC-----CHHHHCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_conf 556899899999999656-----75886487089989-9998788999999999998-79939997899
No 331
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=94.17 E-value=0.14 Score=28.82 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=42.7
Q ss_pred CCCEEEECCCCCC----------CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 2888997388888----------989999986201254357877688999999999999819876753899956589875
Q gi|254780725|r 274 IFPLVILDVPHVW----------NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK 343 (427)
Q Consensus 274 ~yd~VIiD~p~~~----------~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~ 343 (427)
.+.++++|+|... ...+...+..||.+++|++.+..-...-.++++.+++. ..++.+|+|+.+....
T Consensus 44 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~il~viDa~~~~~~~d~~i~~~l~~~---~kp~i~v~NK~D~~~~ 120 (157)
T cd01894 44 GREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKS---KKPVILVVNKVDNIKE 120 (157)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHH---CCCEEEEEECCCCCCC
T ss_conf 9889998578755566067899999999999865907999989999998999999999984---7980999978716586
No 332
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=94.16 E-value=0.42 Score=25.97 Aligned_cols=96 Identities=21% Similarity=0.353 Sum_probs=46.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHH-CCCC-CEEEEEECCC---CHHHHHHHHHC---CCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 499998059876778899988853-2899-8089981687---18999999976---56264318999899999763102
Q gi|254780725|r 79 DLIIVQTKVDSREVLSALEPLAEV-CDSG-TKVIVIGDTN---DVSLYRALISN---HVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 79 ~~iivd~~~~~~~~~~~l~~la~~-~~p~-~~Vivig~~~---d~~l~r~l~r~---Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
|.+++=...++.--...|++.-.. .+.| .+|||+...+ |...+.+.++. |+.=+.+.-.+ .+-++.+...+
T Consensus 113 D~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~d~~~~~~~~~~~~~g~~v~~vSa~~-~~gl~~L~~~l 191 (353)
T PRK01889 113 DTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCEDVEEKIAEVEALAPGVPVLAVNALD-GEGVDALQAWL 191 (353)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCC-CCCHHHHHHHH
T ss_conf 68999952899979789999999999869967999966556679999999999855997599997899-84789999986
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHH
Q ss_conf 3322234567537999746988775689999999
Q gi|254780725|r 151 TPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAF 184 (427)
Q Consensus 151 ~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~ 184 (427)
..|++++|+| ..||||||+.-.|.-
T Consensus 192 --------~~GkT~vl~G-~SGVGKSTLiN~L~g 216 (353)
T PRK01889 192 --------KPGKTVALLG-SSGVGKSTLVNALLG 216 (353)
T ss_pred --------HCCCEEEEEC-CCCCCHHHHHHHHCC
T ss_conf --------3497899977-888669999987565
No 333
>pfam00485 PRK Phosphoribulokinase / Uridine kinase family. In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain.
Probab=94.16 E-value=0.048 Score=31.72 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=78.3
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCC----CHHHH-HCCCCCHHHHHHHHHH
Q ss_conf 799974698877568999999999962699499997879898603343899878----98886-3184561243376532
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPIN----SISDA-IYPVGRIDKAFVSRLP 237 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~----~l~d~-l~~~~rlD~~~l~~~l 237 (427)
+|++.| -.|+||||+|-.|+..|.. .+.++..++.|--...-..+-+..+.. +..+. -..|+.+|-.++...+
T Consensus 1 iIgIaG-~SgSGKTT~a~~L~~~l~~-~~~~~~~~~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~d~P~a~d~~ll~~~l 78 (196)
T pfam00485 1 IIGVAG-SSGAGKTTVARTFVSIFGR-EGVPAAGIEGDSFHRYDRFYMDLHMEDRKRAGNNHYSFFSPEANDFDLLYEQF 78 (196)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHCC-CCCCCCCCCCEEEEEECHHCCCCCHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 989989-9857199999999999660-58776412431798604102443757676514578897896623599999999
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHHHHHHHHCCCCCCCCCCCHHHHHHHHH
Q ss_conf 02489806872487612032079999999899985128889973888889-89999986201254357877688999999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWTQEVLTLSDKVVITTSLDLAGLRNSKN 316 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~~~~L~~AD~vviV~~p~~~slr~a~~ 316 (427)
.....|-.+.. ..+++.......-...+ ..-++||++--+.+. ......+. -.|++-+..+ +|-.+|
T Consensus 79 ~~Lk~g~~i~~------P~Ydf~~~~r~~~~~~i-~p~~viIvEGi~~l~~~~ir~l~D--~kIfid~~~d---~rl~RR 146 (196)
T pfam00485 79 KELKEGGSGDK------PIYNHVTGEADPWPELI-EGADILFIEGLHGLYDERVAQLLD--LKIYVDPDID---LELIQK 146 (196)
T ss_pred HHHHCCCCEEE------EEEECCCCCCCCCCEEC-CCCCEEEEECHHHCCCHHHHHHHC--EEEEEECCCC---HHHHHH
T ss_conf 99708994576------56751345336773661-788569994333303277887638--4799726801---999999
Q ss_pred HHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 999999819876753899956589875200599999984895379906879
Q gi|254780725|r 317 LIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 317 ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~ 367 (427)
+..-..+.+.. ..-|++++.. .+ -..+.|-+......+.+||+-|
T Consensus 147 i~RD~~eRgrs---~~~v~~q~~~-v~--p~~~~fI~P~k~~ADliI~~~p 191 (196)
T pfam00485 147 IQRDMAERGHS---LEGVTDSIER-RK--PDYVNYICPQFSYADLIIQRVP 191 (196)
T ss_pred HHHCHHHHCCC---HHHHHHHHHH-HH--HHHHHHCCCCHHHCCEEECCCC
T ss_conf 87345751999---9999999999-72--5389647478522988970699
No 334
>COG1160 Predicted GTPases [General function prediction only]
Probab=94.15 E-value=0.42 Score=25.96 Aligned_cols=210 Identities=18% Similarity=0.229 Sum_probs=118.7
Q ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCCC-CEEEEEECCCCH----HHHHHHHHCCCCEEECC----CCCHHHHHHHHHH
Q ss_conf 84999980598767788999888532899-808998168718----99999997656264318----9998999997631
Q gi|254780725|r 78 PDLIIVQTKVDSREVLSALEPLAEVCDSG-TKVIVIGDTNDV----SLYRALISNHVSEYLIE----PLSVADIINSISA 148 (427)
Q Consensus 78 P~~iivd~~~~~~~~~~~l~~la~~~~p~-~~Vivig~~~d~----~l~r~l~r~Gv~dyl~~----P~~~~~l~~ai~~ 148 (427)
-+++|.=+++.. -+.++=+.+++...+. .|||++-.--|. ...-+.-..|..|++.- -....+|.+++..
T Consensus 84 ADvilfvVD~~~-Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~ 162 (444)
T COG1160 84 ADVILFVVDGRE-GITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLE 162 (444)
T ss_pred CCEEEEEEECCC-CCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHHHH
T ss_conf 799999984887-8997899999999853998899997666730456489998647898268425535698999999997
Q ss_pred CCC-CCCCCC-C-CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCC
Q ss_conf 023-322234-5-6753799974698877568999999999962699499997879898603343899878988863184
Q gi|254780725|r 149 IFT-PQEEGK-G-SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPV 225 (427)
Q Consensus 149 ~~~-~~~~~~-~-~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~ 225 (427)
.+- ..+... . ...--|+++| |--|||||+-= +|.. ..++++-|. .|++- |.+...
T Consensus 163 ~l~~~e~~~~~~~~~~ikiaiiG-rPNvGKSsLiN----~ilg--eeR~Iv~~~---aGTTR------------D~I~~~ 220 (444)
T COG1160 163 LLPPDEEEEEEEETDPIKIAIIG-RPNVGKSSLIN----AILG--EERVIVSDI---AGTTR------------DSIDIE 220 (444)
T ss_pred HCCCCCCCCCCCCCCCEEEEEEE-CCCCCCHHHHH----HHCC--CCEEEECCC---CCCCC------------CCEEEE
T ss_conf 56774334443567750899992-78787058887----7506--825984599---98622------------033125
Q ss_pred CCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCC-------------CCCHHHHH
Q ss_conf 56124337653202489806872487612032079999999899985128889973888-------------88989999
Q gi|254780725|r 226 GRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPH-------------VWNSWTQE 292 (427)
Q Consensus 226 ~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~-------------~~~~~~~~ 292 (427)
-. +....|+++|+.. ....-+..
T Consensus 221 ~e--------------------------------------------~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~ 256 (444)
T COG1160 221 FE--------------------------------------------RDGRKYVLIDTAGIRRKGKITESVEKYSVARTLK 256 (444)
T ss_pred EE--------------------------------------------ECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHHH
T ss_conf 89--------------------------------------------9881899998778774664124268875054676
Q ss_pred HHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf 98620125435787768899999999999981987675389995658987520059999998489
Q gi|254780725|r 293 VLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGI 357 (427)
Q Consensus 293 ~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~ 357 (427)
++..||.+++|.+.+-.-...-.++..++.+.+ +.+.+|+|+++.-...+...+++++.+..
T Consensus 257 aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g---~~~vIvvNKWDl~~~~~~~~~~~k~~i~~ 318 (444)
T COG1160 257 AIERADVVLLVIDATEGISEQDLRIAGLIEEAG---RGIVIVVNKWDLVEEDEATMEEFKKKLRR 318 (444)
T ss_pred HHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCC---CCEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 786568899999888783688999999999758---97499997532578516679999999998
No 335
>PRK06547 hypothetical protein; Provisional
Probab=94.12 E-value=0.093 Score=29.99 Aligned_cols=37 Identities=24% Similarity=0.283 Sum_probs=25.9
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 56753799974698877568999999999962699499997
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
+...++|+|=| .+|.||||+|..|+..+ .+..|+=+|
T Consensus 12 ~g~~~iVaIDG-~sGaGKTTLA~~La~~~---~~~~vvHmD 48 (184)
T PRK06547 12 GGDMITVLIDG-RSGSGKTTLAGELAACW---EGSQLVHLD 48 (184)
T ss_pred CCCEEEEEEEC-CCCCCHHHHHHHHHHHC---CCCCEEEEC
T ss_conf 99769999868-99888899999999745---798289705
No 336
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.07 E-value=0.22 Score=27.72 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 288899738888898--999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 274 IFPLVILDVPHVWNS--WTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 274 ~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
.+.+.++|+|..... .....+..+|.+++|...+-.-..+...+++.++..+ .++.+++|+++...
T Consensus 49 ~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~---~p~ivviNKiD~~~ 116 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAAN---VPFIVALNKIDKPN 116 (168)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECCCCCC
T ss_conf 871899989981677999999986268899998646675458999999998769---97899998930898
No 337
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.07 E-value=0.37 Score=26.26 Aligned_cols=78 Identities=18% Similarity=0.224 Sum_probs=52.4
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--9899999862012543578-77688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+.++|++... .......+..+|.+++|.. -+..|+.+.+.+++.+++......++.+|-|+.+.....+++.+
T Consensus 47 ~~~~l~iwDt~G~e~~~~l~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~ 126 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTE 126 (159)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHH
T ss_conf 99999999789826577889999754127567244898899999999999999868988826999974563011689999
Q ss_pred H
Q ss_conf 9
Q gi|254780725|r 350 D 350 (427)
Q Consensus 350 ~ 350 (427)
+
T Consensus 127 ~ 127 (159)
T cd00154 127 E 127 (159)
T ss_pred H
T ss_conf 9
No 338
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.19 Score=28.11 Aligned_cols=28 Identities=25% Similarity=0.268 Sum_probs=22.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 56753799974698877568999999999
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
-..|.+++++| ..|+||||+.--++-.+
T Consensus 23 i~~Ge~~~ivG-pSG~GKSTllr~i~Gl~ 50 (178)
T cd03229 23 IEAGEIVALLG-PSGSGKSTLLRCIAGLE 50 (178)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCC
T ss_conf 88998999999-99983999999998599
No 339
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.02 E-value=0.44 Score=25.80 Aligned_cols=111 Identities=10% Similarity=0.176 Sum_probs=72.0
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--98999998620125435787-7688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|.|++..- .......+..++-+++|.+. +..|+.+...+++.++....+..++.+|-|+++.....+++.+
T Consensus 49 ~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~ 128 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred EEEEEEEEECCCCCCCCCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHH
T ss_conf 99999999899985444252111431546599725874767999999999999856999758703401574443899999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
+ ...-|..+|.+..|.+.+. -+.+.|..|++.|.
T Consensus 129 e------------------~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~ 164 (166)
T cd04122 129 E------------------AKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 9------------------99999986998999865878088999999999997
No 340
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=94.00 E-value=0.23 Score=27.51 Aligned_cols=70 Identities=14% Similarity=0.130 Sum_probs=44.4
Q ss_pred EECCCCCH-HHHHHHHHHCCCCCCCCCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 43189998-99999763102332223456753799974-69887756899999999996269949999787989
Q gi|254780725|r 132 YLIEPLSV-ADIINSISAIFTPQEEGKGSSGCSISFIG-SRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 132 yl~~P~~~-~~l~~ai~~~~~~~~~~~~~~grvIav~g-~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
|+.+|++- -..+..+++...... ...-...||+|.+ .-||.|||-++.-||-.|-. +|.++.++-=....
T Consensus 18 ~lL~PlS~ly~~i~~~r~~~~~~g-~~~~pvPVI~VGNltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRGYgg 89 (336)
T COG1663 18 FLLLPLSWLYAFIAGLRRKLAKKG-SYRAPVPVICVGNLTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRGYGG 89 (336)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCC-CCCCCCCEEEECCEEECCCCCCHHHHHHHHHHHH-CCCEEEEEECCCCC
T ss_conf 999999999999999999873246-6567887899855777789968899999999986-69736798057688
No 341
>pfam08423 Rad51 Rad51. Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein.
Probab=93.95 E-value=0.46 Score=25.71 Aligned_cols=46 Identities=13% Similarity=0.130 Sum_probs=33.9
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHH--H---HCCCCEEEEECCCCCC
Q ss_conf 567537999746988775689999999999--6---2699499997879898
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIA--S---VFAMETLLADLDLPYG 204 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA--~---~~~~~VlLvDlDl~~g 204 (427)
-+.|.|.=++| -.|+|||.+++.||.... . ..+.+|+.||..-.|.
T Consensus 40 i~~g~ITEi~G-~~gsGKTQlc~qlav~~qlp~~~gg~~g~vvyIDTEg~f~ 90 (261)
T pfam08423 40 IETGSITEVFG-EFRTGKTQLCHTLCVTCQLPLEMGGGEGKALYIDTEGTFR 90 (261)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHCHHHHCCCCCEEEEEECCCCCC
T ss_conf 66772999989-9888789999999999407096569997289993688869
No 342
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=93.91 E-value=0.47 Score=25.68 Aligned_cols=112 Identities=15% Similarity=0.192 Sum_probs=74.0
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--9899999862012543578-77688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-++|++... .......+..+|.+++|.+ -+..|+.+...+++.+.+......++.+|-|+.+......++.+
T Consensus 49 ~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~~~ 128 (166)
T cd01869 49 KTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYS 128 (166)
T ss_pred EEEEEEEEECCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHH
T ss_conf 99999999899982346267888563267799711799899999999999999867877744886132011314667999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 99998489537990687999999884796189888999--899999999999852
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
+ ...-|...|.+..|.+.+. -+.+.|..|++.|..
T Consensus 129 ~------------------~~~~a~~~~~~~~E~SAk~g~nI~e~F~~l~~~i~k 165 (166)
T cd01869 129 E------------------AQEFADELGIPFLETSAKNATNVEQAFMTMAREIKK 165 (166)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 9------------------999999839969998768780689999999999971
No 343
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.88 E-value=0.14 Score=28.82 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 753799974698877568999999999
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
.|.+++++| ..|+||||+.--+|-..
T Consensus 22 ~ge~~~iiG-pSGsGKSTll~~i~GL~ 47 (214)
T cd03297 22 NEEVTGIFG-ASGAGKSTLLRCIAGLE 47 (214)
T ss_pred CCCEEEEEC-CCCCHHHHHHHHHHCCC
T ss_conf 997999999-99735999999998499
No 344
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=93.85 E-value=0.11 Score=29.53 Aligned_cols=65 Identities=22% Similarity=0.297 Sum_probs=43.2
Q ss_pred CCEEEECCCCCCCH----------HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 88899738888898----------999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 275 FPLVILDVPHVWNS----------WTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 275 yd~VIiD~p~~~~~----------~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
+.++++|+|..... .+...+..+|.+++|.+.+-..-..-..+++.++..+ .++.+|+|+++.-.
T Consensus 51 ~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~---~~~iivlNK~Dl~~ 125 (168)
T cd04163 51 AQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSK---TPVILVLNKIDLVK 125 (168)
T ss_pred EEEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECEEECC
T ss_conf 7899995898665145677899999998651365589999789898667799999999809---98599997887047
No 345
>PRK13409 putative ATPase RIL; Provisional
Probab=93.79 E-value=0.49 Score=25.55 Aligned_cols=140 Identities=16% Similarity=0.208 Sum_probs=69.5
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCC-CCHHHHHHHHHH
Q ss_conf 6753799974698877568999999999962699499997879898603343899878988863184-561243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPV-GRIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~-~rlD~~~l~~~l 237 (427)
..|.+|+++| .-|+||||++--||-.+.-..| .+ . .+..-+-...++..++..++.+.+... ..++...+...+
T Consensus 363 ~~GEiigIvG-~NGaGKTTLlKiLaG~lkPd~G-~V-~--~~~~isY~pQ~i~~d~~~tV~~~L~~~~~~~~~~~~~~el 437 (590)
T PRK13409 363 RKGEVIGIVG-PNGIGKTTFVKLLAGVLKPDEG-EV-D--TDLKISYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEI 437 (590)
T ss_pred ECCCEEEEEC-CCCCCHHHHHHHHHCCCCCCCC-EE-E--ECCEEEECCHHCCCCCCCCHHHHHHHHCCCCCHHHHHHHH
T ss_conf 0474899988-8888789999998288778874-47-5--4774873360014686881999998624422538999999
Q ss_pred HCCCCCEEEEECCCCCC-CHHCCCHHHHHH--HHHHHHHCCCEEEECCCCCCCH-HH--------HHHHHHCCCCCCCCC
Q ss_conf 02489806872487612-032079999999--8999851288899738888898-99--------999862012543578
Q gi|254780725|r 238 VFYAENLSILTAPAMLS-RTYDFDEKMIVP--VLDILEQIFPLVILDVPHVWNS-WT--------QEVLTLSDKVVITTS 305 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~-~~~~~~~~~l~~--ll~~l~~~yd~VIiD~p~~~~~-~~--------~~~L~~AD~vviV~~ 305 (427)
.+ .|.+ ..-++ ....++.+...+ +...+....|+.|+|=|...-+ .. ...+.......+|++
T Consensus 438 l~---~L~l---~~lldk~v~~LSGGEkQRvaLA~~L~~~anvLLLDEPTn~LDvE~R~~~~k~i~~~~~~~~~t~~vV~ 511 (590)
T PRK13409 438 IK---PLNL---EKLLDRNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAYLDVEQRLAVARAIRRIAEEKEKAALVVD 511 (590)
T ss_pred HH---HHCC---HHHHCCCHHHCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 98---8788---86764962440989999999999866799999994898877889999999999999986697599994
Q ss_pred CCHH
Q ss_conf 7768
Q gi|254780725|r 306 LDLA 309 (427)
Q Consensus 306 p~~~ 309 (427)
-|..
T Consensus 512 HD~~ 515 (590)
T PRK13409 512 HDIY 515 (590)
T ss_pred CCHH
T ss_conf 7099
No 346
>PRK00139 murE UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase; Provisional
Probab=93.75 E-value=0.34 Score=26.48 Aligned_cols=35 Identities=20% Similarity=0.100 Sum_probs=26.8
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 675379997469887756899999999996269949999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
...++|+|+|+ .||||++.-++..|.. .|.++.++
T Consensus 98 ~~l~vIgITGT---nGKTTt~~~l~~iL~~-~g~~~~~i 132 (481)
T PRK00139 98 DKLKLIGVTGT---NGKTTTAYLIAQILRL-LGKKAALI 132 (481)
T ss_pred HCCCEEEEECC---CCCHHHHHHHHHHHHH-CCCCCEEE
T ss_conf 31808999589---9843499999999987-49863143
No 347
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; InterPro: IPR013454 Rhamnose is a methyl-pentose sugar which is found as a constituent of pectin within the cell walls of dicotyledonous plants and has also been found in the mucilage of a number of legume plants . RhaD from Rhizobium leguminosarum bv. trifolii is encoded by a gene occurring in a rhamnose utilisation cluster, and is necessary for growth on this compound . This protein is predicted to be a bifunctional NAD-dependent aldolase/dehydrogenase..
Probab=93.72 E-value=0.061 Score=31.09 Aligned_cols=248 Identities=18% Similarity=0.210 Sum_probs=123.8
Q ss_pred CEEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH-HHHHH-----
Q ss_conf 305999838989999999886411002022373069989999998618998499998059876778899-98885-----
Q gi|254780725|r 28 RISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSAL-EPLAE----- 101 (427)
Q Consensus 28 ~~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l-~~la~----- 101 (427)
|-.|-.|-+++.+.+.+... +-+||+.-+.- +++ ||..+= -.=++||.... ..-+++| ..|.+
T Consensus 257 r~~i~~f~D~d~vL~Fvns~-e~~~La~LGts-----CPD---HflrTK-~~PL~iD~~P~-a~d~e~~~~~l~~~~~~Y 325 (709)
T TIGR02632 257 RRKIGTFDDSDAVLEFVNSK-EAPRLAALGTS-----CPD---HFLRTK-IRPLVIDWAPD-APDLEELVAKLKEGLEAY 325 (709)
T ss_pred CCEEEEECCCHHHHHHHHHH-CCCCHHHCCCC-----CCC---CHHHCC-CCCEEEECCCC-CCCHHHHHHHHHHHHHHH
T ss_conf 20035323747888876202-13105650676-----653---012315-35525732688-765899999999999987
Q ss_pred ---------H---------CCCCCEEEEE--------EC-----CCCHHHHHHHHH-----CCCCEEECCCCCHH-----
Q ss_conf ---------3---------2899808998--------16-----871899999997-----65626431899989-----
Q gi|254780725|r 102 ---------V---------CDSGTKVIVI--------GD-----TNDVSLYRALIS-----NHVSEYLIEPLSVA----- 140 (427)
Q Consensus 102 ---------~---------~~p~~~Vivi--------g~-----~~d~~l~r~l~r-----~Gv~dyl~~P~~~~----- 140 (427)
. -+|...||.| |. .-.-.+|.+++. .-+++|...|....
T Consensus 326 r~dY~~YYe~~~~p~Sp~Mr~a~P~v~LvPGvGm~SfGkdk~~arva~efY~~AI~VMRGA~Av~~Y~~L~e~E~F~IEY 405 (709)
T TIGR02632 326 REDYARYYERHRRPDSPTMRDANPAVLLVPGVGMISFGKDKETARVAAEFYVNAINVMRGAEAVSEYAALPEQEAFDIEY 405 (709)
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCCCH
T ss_conf 89999997503788648888868738970771345346666667888999999997415611121025875110334101
Q ss_pred HHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHH
Q ss_conf 99997631023322234567537999746988775689999999999626994999978798986033438998789888
Q gi|254780725|r 141 DIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISD 220 (427)
Q Consensus 141 ~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d 220 (427)
+.++ ...+...+. ++.-.+||+.|+|+-||+|+- +|..|+.+ |-.|+++|+|...-..
T Consensus 406 W~LE-eaKL~rmP~-ek~LA~~Va~VtGGasGIG~~-----~A~rL~~e-GAhvV~aD~d~~~a~~-------------- 463 (709)
T TIGR02632 406 WALE-EAKLRRMPK-EKELARRVAFVTGGASGIGRE-----TARRLVDE-GAHVVLADLDAEAAEA-------------- 463 (709)
T ss_pred HHHH-HHHHHCCCC-CCCCCCEEEEEECCCCCHHHH-----HHHHHHHC-CCEEEEECCCHHHHHH--------------
T ss_conf 1679-998724765-967157068897388652689-----99999736-9779996236578999--------------
Q ss_pred HHCCCCCHHHHHHHHHHHCCCCCEE-----EEEC-CCCCCCHHCCCHHHHHHHHHHHHHCC---CEEEECCCCCCCHHHH
Q ss_conf 6318456124337653202489806-----8724-87612032079999999899985128---8899738888898999
Q gi|254780725|r 221 AIYPVGRIDKAFVSRLPVFYAENLS-----ILTA-PAMLSRTYDFDEKMIVPVLDILEQIF---PLVILDVPHVWNSWTQ 291 (427)
Q Consensus 221 ~l~~~~rlD~~~l~~~l~~~~~gL~-----lL~a-~~~~~~~~~~~~~~l~~ll~~l~~~y---d~VIiD~p~~~~~~~~ 291 (427)
.-+.+..+++.+-- +-++ |.---..+-.+++.+...++.....| |.||..-+-..+....
T Consensus 464 -----------va~~~~~~fG~d~a~AGsdisaCGPaiGl~~DvT~e~~v~~~f~~v~~~yGGvD~vv~nAGi~~S~p~~ 532 (709)
T TIGR02632 464 -----------VAAEIVDKFGADKAVAGSDISACGPAIGLKLDVTDEEAVKAAFAEVALAYGGVDIVVNNAGIAVSSPLE 532 (709)
T ss_pred -----------HHHHHHHHCCCCCEECCCCHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHCCEEEEEECCCHHCCCCCH
T ss_conf -----------999986313888121143200046710027631758999999999999749847876525301057702
Q ss_pred H---HHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 9---986201254357877688999999999
Q gi|254780725|r 292 E---VLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 292 ~---~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
. .=...=.+=|.++...---|.+-|+++
T Consensus 533 ~t~r~~~W~l~~di~atG~FLVareA~r~~~ 563 (709)
T TIGR02632 533 ETERLEEWDLNLDILATGYFLVAREAARLMR 563 (709)
T ss_pred HHHHHHHHHHCCEEEEECCHHHHHHHHHHHH
T ss_conf 3221554320120101200358889999997
No 348
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=93.71 E-value=0.29 Score=26.91 Aligned_cols=83 Identities=12% Similarity=0.161 Sum_probs=57.1
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHH-HHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--8989999986201254357877-688999999999-999819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLID-VLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~-~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++.. ........+..+|-+++|.+.+ ..++.++...+. .++.......++.++.|+.+.+. .++.+
T Consensus 57 ~~~~~lwD~~G~~~~~~~~~~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~--a~~~~ 134 (173)
T cd04155 57 GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLAT--AAPAE 134 (173)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCHH
T ss_conf 9999998558751012689976555637999996675688999999999997413006983899997666777--89999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
++.+.++..
T Consensus 135 eI~~~l~l~ 143 (173)
T cd04155 135 EIAEALNLH 143 (173)
T ss_pred HHHHHHCHH
T ss_conf 999985876
No 349
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=93.70 E-value=0.51 Score=25.45 Aligned_cols=109 Identities=13% Similarity=0.156 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCCC---HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHH
Q ss_conf 28889973888889---899999862012543578-776889999999999998198-7675389995658987520059
Q gi|254780725|r 274 IFPLVILDVPHVWN---SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 274 ~yd~VIiD~p~~~~---~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
.+.+-|+|++..-. .........+|-+++|.+ -+..|+.+.+.+++.+++... +.-++.+|-|+.+......++.
T Consensus 50 ~v~l~iwDtaG~e~~~~s~~~~~~~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~ 129 (170)
T cd04115 50 RIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPT 129 (170)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCH
T ss_conf 99999997788530567778998457735799950474767999999999999865888997999999821341178799
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC-----HHHHHHHHHHHHH
Q ss_conf 999998489537990687999999884796189888999-----8999999999998
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS-----AIANLLVDFSRVL 400 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s-----~~a~~~~~La~~i 400 (427)
+ +.-.-|...|.+..|.+.+. -+-+.|..||++|
T Consensus 130 ~------------------e~~~~a~~~~~~~~E~SAK~~~~~~nV~~~F~~la~~i 168 (170)
T cd04115 130 D------------------LAQRFADAHSMPLFETSAKDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred H------------------HHHHHHHHCCCEEEEECCCCCCCCCCHHHHHHHHHHHH
T ss_conf 9------------------99999997799999988899851708899999999996
No 350
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=93.69 E-value=0.51 Score=25.43 Aligned_cols=111 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 128889973888889--8999998620125435787-7688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+.++|++.... ......+..+|.+++|.+. +..|+.+...+.+.+++......++.+|-|+.+.+....++.+
T Consensus 47 ~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v~~~ 126 (162)
T cd04123 47 KRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKS 126 (162)
T ss_pred EEEEEEEEECCCCCCCCCCCHHHEECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCHH
T ss_conf 99999999589973035563133011445799963899899999999999999876999746866332132540888999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
+. -.-|...|-+..|.+.++ -+.+.|..|+++|.
T Consensus 127 e~------------------~~~a~~~~~~y~e~Sak~g~nV~e~F~~l~~~il 162 (162)
T cd04123 127 EA------------------EEYAKSVGAKHFETSAKTGKGIEELFLSLAKRMI 162 (162)
T ss_pred HH------------------HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 99------------------9999982998999812788198999999999869
No 351
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.69 E-value=0.2 Score=27.97 Aligned_cols=237 Identities=14% Similarity=0.088 Sum_probs=95.4
Q ss_pred HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCC-----------CCCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 899999997656264318999899999763102332223-----------456753799974698877568999999999
Q gi|254780725|r 118 VSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEG-----------KGSSGCSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 118 ~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~-----------~~~~grvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
...+++|.+.|.+. ++.+++.+....+.....+. ....-..|-++|+-.||||||||..+|.-|
T Consensus 39 ~~i~e~L~~~~~~~-----v~~~eir~~~~~l~~k~~~e~a~rY~lwR~ir~~~~p~IILIGGasGVGkStIA~ElA~rL 113 (299)
T COG2074 39 IEIQEELKKEGIRL-----VTKDEIREVYQKLLEKGDPEVAKRYLLWRRIRKMKRPLIILIGGASGVGKSTIAGELARRL 113 (299)
T ss_pred HHHHHHHHHCCCEE-----EEHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99999997579727-----6199999999999873287999999999998615787599961788777257999999972
Q ss_pred HHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHH
Q ss_conf 96269949999787989860334389987898886318456124337653202489806872487612032079999999
Q gi|254780725|r 187 ASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVP 266 (427)
Q Consensus 187 A~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ 266 (427)
|-+-+ +--|.----+--.++-+-.++|..-. ...++.+-.+..++. ++++-. ++...+ ...+..
T Consensus 114 ----gI~~v-isTD~IREvlR~ii~~~l~PtLh~Ss-------y~Awkalr~~~~~~p-iiaGF~--dqa~~V-~~GI~~ 177 (299)
T COG2074 114 ----GIRSV-ISTDSIREVLRKIISPELLPTLHTSS-------YDAWKALRDPTDENP-IIAGFE--DQASAV-MVGIEA 177 (299)
T ss_pred ----CCCEE-ECCHHHHHHHHHHCCHHHCCHHHHHH-------HHHHHHHCCCCCCCC-HHHHHH--HHHHHH-HHHHHH
T ss_conf ----98610-04247999999737977455356757-------799998368999961-313178--776799-988999
Q ss_pred HHHHHHHCCCEEEECCCCCCCHH-HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCH
Q ss_conf 89998512888997388888989-99998620125435787768899999999999981987675389995658987520
Q gi|254780725|r 267 VLDILEQIFPLVILDVPHVWNSW-TQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPE 345 (427)
Q Consensus 267 ll~~l~~~yd~VIiD~p~~~~~~-~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~ 345 (427)
+++.+-+.-.-+|+..=+..... -...+......+++.-+|.--.+ .|+.+-. +... .|+- +.
T Consensus 178 VI~RAi~eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr--~RF~~R~---~~t~------~~rp-----~~ 241 (299)
T COG2074 178 VIERAIEEGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHR--ERFYDRI---RYTH------ASRP-----GG 241 (299)
T ss_pred HHHHHHHCCCCEEEEEEEECCCCCCHHHHCCCEEEEEEEECCHHHHH--HHHHHHH---HHHH------CCCC-----HH
T ss_conf 99999853753588742115002167661355178999838878999--9999988---8876------0596-----56
Q ss_pred HHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHC
Q ss_conf 059999998489537990687999999884796189888999899999999999852
Q gi|254780725|r 346 ISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMG 402 (427)
Q Consensus 346 i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~~~~La~~i~g 402 (427)
--.+-|.+.-.. .|. ++..|-..|.|+.+ +..+....+++.+.+..
T Consensus 242 Ryl~yf~EiR~I-------~Dy-l~~~Are~gVPvI~---n~di~etv~~il~~i~~ 287 (299)
T COG2074 242 RYLEYFKEIRTI-------HDY-LVERAREHGVPVIE---NDDIDETVDRILEDIRK 287 (299)
T ss_pred HHHHHHHHHHHH-------HHH-HHHHHHHCCCCEEC---CCCHHHHHHHHHHHHHH
T ss_conf 799999999999-------999-99988865998112---53199999999999999
No 352
>PRK05480 uridine kinase; Provisional
Probab=93.66 E-value=0.14 Score=28.83 Aligned_cols=182 Identities=15% Similarity=0.118 Sum_probs=78.0
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH-HHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 53799974698877568999999999962699499997879898603-34389987898886318456124337653202
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN-INFDKDPINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~-~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
--+|++.| -.|+||||+|-.|+..|. +..+.++.+|-.+-+.. .........+ ...|+.+|-.++...+..
T Consensus 6 P~iIgIaG-~SgSGKTT~a~~L~~~l~---~~~v~vi~~D~Yy~~~~~~~~~e~~~~n----fD~P~a~d~~ll~~~L~~ 77 (209)
T PRK05480 6 PIIIGIAG-GSGSGKTTVASTIYEELG---DESIAVISQDSYYKDQSHLSMEERVKTN----YDHPDAFDHDLLIEHLKA 77 (209)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHCC---CCCEEEEECCCCCCCCCCCCHHHHCCCC----CCCCHHHHHHHHHHHHHH
T ss_conf 88999989-997789999999999808---6875999554412473407886812368----788267669999999999
Q ss_pred CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 48980687248761203207999999989998512888997388888989999986201254357877688999999999
Q gi|254780725|r 240 YAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 240 ~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
...|-.+- -..+++.......-...+ ..-++||++--..+.... .-...|.-+.+-.+ ..+|-.+|+..
T Consensus 78 L~~G~~v~------~P~Ydf~t~~r~~~~~~i-~~~~iiIvEGi~~l~~~~--lr~~~DlkIfid~~--~d~rl~RRi~R 146 (209)
T PRK05480 78 LKAGKAIE------IPVYDYTEHTRSKETIHV-EPKDVIILEGILLLEDER--LRDLMDIKIFVDTP--LDIRLIRRLKR 146 (209)
T ss_pred HHCCCCCC------CCCCCCCCCCCCCCEEEE-CCCCEEEEECHHHCCCHH--HHHHHCEEEEEECC--HHHHHHHHHHH
T ss_conf 97499875------675445566557863896-698769993456406787--88652657999667--77899999997
Q ss_pred HHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCC
Q ss_conf 99981987675389995658987520059999998489537990687
Q gi|254780725|r 320 VLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFD 366 (427)
Q Consensus 320 ~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D 366 (427)
-..+.+...+ -|++++....+ -..+.|-.......+.+||..
T Consensus 147 D~~eRGr~~e---~vi~q~~~~v~--p~~~~yI~P~k~~ADlII~~~ 188 (209)
T PRK05480 147 DVNERGRSLE---SVINQYLSTVR--PMHLQFIEPSKRYADIIIPEG 188 (209)
T ss_pred HHHHHCCCHH---HHHHHHHHHHH--HHHHHHCHHHHHCCEEEECCC
T ss_conf 8999788999---99999999765--769976845274240898899
No 353
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.64 E-value=0.19 Score=28.07 Aligned_cols=44 Identities=20% Similarity=0.259 Sum_probs=30.8
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5675379997469887756899999999996269949999787989
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
-+.|.+++++| ..|+||||+.--++-.+.- ....+.+-+-|...
T Consensus 28 i~~Ge~~~iiG-~sGsGKSTLl~~i~Gl~~p-~~G~I~~~g~~i~~ 71 (228)
T cd03257 28 IKKGETLGLVG-ESGSGKSTLARAILGLLKP-TSGSIIFDGKDLLK 71 (228)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCCEEEECCEECCC
T ss_conf 86998999999-9998699999999728987-88669989964677
No 354
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.64 E-value=0.16 Score=28.59 Aligned_cols=53 Identities=19% Similarity=0.290 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 137 LSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 137 ~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
....|+-+.+..-+. .|- +..+|..-|+||||+...+|..|++ .+.+|++|-.
T Consensus 66 Tgi~ElDRVLGGGiV--------pGS-vvLlgGePGIGKSTLLLQia~~la~-~~~~vLYvSG 118 (372)
T cd01121 66 TGIEELDRVLGGGLV--------PGS-VILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSG 118 (372)
T ss_pred CCCHHHHHHHCCCCC--------CCE-EEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEC
T ss_conf 783666540057730--------671-7998259988688999999999986-3993899824
No 355
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.63 E-value=0.52 Score=25.36 Aligned_cols=119 Identities=13% Similarity=0.136 Sum_probs=58.3
Q ss_pred CHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHH---H-C-------CCCCEEEEEECCC------CHHHHHHHHH
Q ss_conf 98999999861899849999805987677889998885---3-2-------8998089981687------1899999997
Q gi|254780725|r 64 SIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAE---V-C-------DSGTKVIVIGDTN------DVSLYRALIS 126 (427)
Q Consensus 64 ~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~---~-~-------~p~~~Vivig~~~------d~~l~r~l~r 126 (427)
+..+++.++.... -.+.+.|.+..+ +-+..++..-. . + -.+..+||++.-- ...++..+.+
T Consensus 18 sG~a~a~~L~~~G-~~V~~~D~~~~~-~~~~~l~~~~~~~~~~~g~~~~~~~~~~d~vV~SPGI~p~~p~~~~~l~~A~~ 95 (501)
T PRK02006 18 SGLAMARWCARHG-CRLRVADTREAP-PNLAALQAEGIDAEFVGGAFDPALLDGVELVALSPGLSPLEPALAALLAAARE 95 (501)
T ss_pred HHHHHHHHHHHCC-CEEEEEECCCCC-CCHHHHHHCCCCCEEECCCCCHHHHCCCCEEEECCEECCCCCCHHHHHHHHHH
T ss_conf 8999999999789-849999899998-61999986089818977889867846899999899008888543199999998
Q ss_pred CCCCEEECCCCCHHHH-HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 6562643189998999-9976310233222345675379997469887756899999999996269949999
Q gi|254780725|r 127 NHVSEYLIEPLSVADI-INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 127 ~Gv~dyl~~P~~~~~l-~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
.|+. .+ +..|+ .+.+..+ ........|+|+|.|+. ||||++.=+++.|.. .|.++.+.
T Consensus 96 ~gi~-i~----~eiel~~~~~~~~----~~~~~~~~~iIaVTGTn---GKTTTt~li~~iL~~-~g~~~~~~ 154 (501)
T PRK02006 96 RGIP-VW----GELELFAQALAAL----GASRGYAPKVLAITGTN---GKTTTTSLTGLLCER-AGKKVAVA 154 (501)
T ss_pred CCCC-EE----EHHHHHHHHHHHC----CCCCCCCCCEEEEECCC---CHHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 7995-87----6899999887630----22235687489993899---668799999999997-69974652
No 356
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=93.60 E-value=0.09 Score=30.05 Aligned_cols=42 Identities=26% Similarity=0.335 Sum_probs=29.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67537999746988775689999999999626994999978798
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
+.|+.|+++| +.|+||||++-.+.-.+.-. ..++.+=+.|+.
T Consensus 497 ~~Ge~vaIvG-~SGsGKSTL~KLL~gly~p~-~G~I~~dg~dl~ 538 (709)
T COG2274 497 PPGEKVAIVG-RSGSGKSTLLKLLLGLYKPQ-QGRILLDGVDLN 538 (709)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCEEHH
T ss_conf 7998899987-99998899999983678888-855999987278
No 357
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=93.59 E-value=0.31 Score=26.79 Aligned_cols=79 Identities=23% Similarity=0.331 Sum_probs=37.4
Q ss_pred CCCEEEECCCCCC--CH------HHHHHH--HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC
Q ss_conf 2888997388888--98------999998--6201254357877688999999999999819876753899956589875
Q gi|254780725|r 274 IFPLVILDVPHVW--NS------WTQEVL--TLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK 343 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~------~~~~~L--~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~ 343 (427)
.+.++++|+|... .. .....+ ..||.++.|.+.+-.. |+. .+...+... ..++.+|+|+++..++
T Consensus 45 ~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~~~aDlvl~vvDa~~~e-r~l-~l~~~l~~~---~~p~IvVlNK~Dl~~~ 119 (188)
T pfam02421 45 GYEIEIVDLPGTYSLSPYSEEEKVARDYLLEEKPDVIINVVDATNLE-RNL-YLTLQLLEL---GIPVVVALNMMDEAEK 119 (188)
T ss_pred CEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCHH-HHH-HHHHHHHHC---CCCEEEEECCCHHCCC
T ss_conf 16799996888501465327899999998623687369997676245-448-999999976---9988999617020100
Q ss_pred CHH--HHHHHHHHHCC
Q ss_conf 200--59999998489
Q gi|254780725|r 344 PEI--SISDFCAPLGI 357 (427)
Q Consensus 344 ~~i--~~~~~~~~lg~ 357 (427)
..+ ..+.+.+.+|.
T Consensus 120 ~~~~~~~~~l~~~lg~ 135 (188)
T pfam02421 120 KGIKIDIKKLSELLGV 135 (188)
T ss_pred CCCHHHHHHHHHHCCC
T ss_conf 3652039999987399
No 358
>KOG0635 consensus
Probab=93.56 E-value=0.28 Score=27.05 Aligned_cols=108 Identities=24% Similarity=0.252 Sum_probs=59.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHH---HHHH
Q ss_conf 6753799974698877568999999999962699499997879898603343899878988863184561243---3765
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKA---FVSR 235 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~---~l~~ 235 (427)
..|-+|=+.| -.|.||||+|+.|..+|-+ +|+-+-.+|-|----.++..|+- .-.|-..+..|+.++ +.+
T Consensus 29 qkGcviWiTG-LSgSGKStlACaL~q~L~q-rgkl~Y~LDGDNvRhGLN~DL~F----~a~dR~ENIRRigeVaKLFAD- 101 (207)
T KOG0635 29 QKGCVIWITG-LSGSGKSTLACALSQALLQ-RGKLTYILDGDNVRHGLNKDLGF----KAEDRNENIRRIGEVAKLFAD- 101 (207)
T ss_pred CCCCEEEEEC-CCCCCCHHHHHHHHHHHHH-CCCEEEEECCCCCCCCCCCCCCC----CHHHHHHHHHHHHHHHHHHHC-
T ss_conf 8996899742-5778802599999999986-58658985485401043445676----503344657888999998732-
Q ss_pred HHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCC
Q ss_conf 3202489806872487612032079999999899985128889973888
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPH 284 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~ 284 (427)
.++-.++ .+-.++....++.+.++..- .|=-|.+|+|-
T Consensus 102 ------ag~icia---SlISPYR~dRdacRel~~~~--~FiEvfmdvpl 139 (207)
T KOG0635 102 ------AGVICIA---SLISPYRKDRDACRELLPEG--DFIEVFMDVPL 139 (207)
T ss_pred ------CCEEEEE---HHCCCHHCCHHHHHHHCCCC--CEEEEEECCCH
T ss_conf ------5403100---21580020579999736689--85888752868
No 359
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.56 E-value=0.54 Score=25.29 Aligned_cols=45 Identities=13% Similarity=0.101 Sum_probs=33.4
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC-CCCHH
Q ss_conf 5379997469887756899999999996269949999787989-86033
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY-GTANI 208 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~-g~~~~ 208 (427)
-+.|.|.| --|.|||++--.+-..|..+ .+..+|-.|... -++..
T Consensus 13 ~~~i~v~G-p~GSGKTaLie~~~~~L~~~--~~~aVI~~Di~t~~Da~~ 58 (202)
T COG0378 13 MLRIGVGG-PPGSGKTALIEKTLRALKDE--YKIAVITGDIYTKEDADR 58 (202)
T ss_pred EEEEEECC-CCCCCHHHHHHHHHHHHHHH--CCEEEEECEEECHHHHHH
T ss_conf 48999617-99867899999999999752--776899640400655999
No 360
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=93.54 E-value=0.54 Score=25.27 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=71.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCC-CCCEEEEECCC-CCCCCHHHH
Q ss_conf 2888997388888--98999998620125435787-7688999999999999819876-75389995658-987520059
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPAD-KPPYLVLNQVK-TPKKPEISI 348 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~-~~~~iVlNr~~-~~~~~~i~~ 348 (427)
.+.+-|+|++... ......-+..||.+++|.+- +..|+.++..+++.+.+..... -++.+|-|+++ ......++.
T Consensus 46 ~v~l~i~DtaG~e~~~~l~~~~~r~a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~ 125 (198)
T cd04147 46 SLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPA 125 (198)
T ss_pred EEEEEEEECCCCCCCHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCH
T ss_conf 99999997877513014555541588668999616977999999999999999628889828999878765010478489
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHH-HCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 99999848953799068799999988-4796189888999--899999999999852
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSA-NSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~-~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
++.+ ..|. ..+.+..|.+.+. -+-+.|..|++.+.-
T Consensus 126 ~e~~------------------~~a~~~~~~~f~EtSAktg~nV~e~F~~l~r~i~~ 164 (198)
T cd04147 126 KDAL------------------STVELDWNCGFVETSAKDNENVLEVFKELLRQANL 164 (198)
T ss_pred HHHH------------------HHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHCC
T ss_conf 9999------------------99985599789987799994989999999999773
No 361
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=93.53 E-value=0.16 Score=28.49 Aligned_cols=38 Identities=24% Similarity=0.321 Sum_probs=30.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 9997469887756899999999996269949999787989
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
|.++ +-.|+||||++.++|...+. .+.+|+++|..-..
T Consensus 2 ~li~-g~~g~GKttl~~~~~~~~~~-~~~~~~~~~~ee~~ 39 (165)
T cd01120 2 ILVF-GPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEI 39 (165)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCH
T ss_conf 8999-89999899999999999876-39979999866644
No 362
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.50 E-value=0.44 Score=25.80 Aligned_cols=74 Identities=22% Similarity=0.262 Sum_probs=45.7
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCCC-------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCC---CCEEEEECCCCC
Q ss_conf 189998999997631023322234-------5675379997469887756899999999996269---949999787989
Q gi|254780725|r 134 IEPLSVADIINSISAIFTPQEEGK-------GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFA---METLLADLDLPY 203 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~~~~~~~~~-------~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~---~~VlLvDlDl~~ 203 (427)
..|++...+...+.++|....... ....+-++|+++-.|+||||+.+.+-..|.+... .++.|+ -+.
T Consensus 127 ~~~~~~~~~~~~L~~lf~~~~~~dwQk~A~a~Al~~~~~vIsGGPGTGKTttV~~lLa~l~~~~~~~~l~I~La---APT 203 (607)
T PRK10875 127 AIEVDEALLAQTLDALFPPGDEVNWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLA---APT 203 (607)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEE---CCH
T ss_conf 88899899999999857998885189999999875577899679998778899999999999645899708998---822
Q ss_pred CCCHHHC
Q ss_conf 8603343
Q gi|254780725|r 204 GTANINF 210 (427)
Q Consensus 204 g~~~~~l 210 (427)
|-++.-|
T Consensus 204 GKAAaRL 210 (607)
T PRK10875 204 GKAAARL 210 (607)
T ss_pred HHHHHHH
T ss_conf 8999999
No 363
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=93.50 E-value=0.55 Score=25.23 Aligned_cols=111 Identities=14% Similarity=0.139 Sum_probs=72.6
Q ss_pred CCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCHHHHHH
Q ss_conf 888997388888--98999998620125435787-7688999999999999819876-7538999565898752005999
Q gi|254780725|r 275 FPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPAD-KPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 275 yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~-~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
+.+-++|++..- .......+..|+-+++|.+. +..|+.+.+.+++.++...... .++.+|-|+++......++.++
T Consensus 63 v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e 142 (180)
T cd04127 63 IHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQ 142 (180)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHH
T ss_conf 99999989886304788899987543658999689889999899999999985466898578750323667508889999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCC
Q ss_conf 9998489537990687999999884796189888999--8999999999998522
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGR 403 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr 403 (427)
...-|...|.+..|.+.+. -+.+.|..|++.+..|
T Consensus 143 ------------------~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~~~ 179 (180)
T cd04127 143 ------------------AKALADKYGIPYFETSAATGTNVEKAVERLLDLVMKR 179 (180)
T ss_pred ------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHH
T ss_conf ------------------9999998499799980377919899999999999972
No 364
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.47 E-value=0.23 Score=27.61 Aligned_cols=79 Identities=11% Similarity=0.127 Sum_probs=43.7
Q ss_pred CCCEEEECCCCCC---------C----HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 2888997388888---------9----89999986201254357877688999999999999819876753899956589
Q gi|254780725|r 274 IFPLVILDVPHVW---------N----SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 274 ~yd~VIiD~p~~~---------~----~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
...++++|+|... . ..+..++..+|.+++|++.+-.-...-..+++.+...+ .++.+|+|+++.
T Consensus 49 ~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~---~p~iiv~NK~Dl 125 (174)
T cd01895 49 GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEG---KALVIVVNKWDL 125 (174)
T ss_pred CEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECEEC
T ss_conf 98899985788421344210688999999999998428658997589899889999999999859---986999856752
Q ss_pred CCCCHHHHHHHHHHH
Q ss_conf 875200599999984
Q gi|254780725|r 341 PKKPEISISDFCAPL 355 (427)
Q Consensus 341 ~~~~~i~~~~~~~~l 355 (427)
-.......+.+.+.+
T Consensus 126 i~~~~~~~~~~~~~~ 140 (174)
T cd01895 126 VEKDSKTMKEFKKEI 140 (174)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 676477899999999
No 365
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=93.44 E-value=0.36 Score=26.37 Aligned_cols=146 Identities=15% Similarity=0.122 Sum_probs=73.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCC-HHH----HH
Q ss_conf 67537999746988775689999999999626994999978798986033-4389987898886318456-124----33
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGR-IDK----AF 232 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~r-lD~----~~ 232 (427)
+.|-.|+++| .-|+||||+.--++-.+.-..| + +-+.-++..+-... .-.+++..++.+.+..... +.. ..
T Consensus 343 ~~Ge~ialvG-~NGsGKSTLlk~l~G~l~p~~G-~-i~~g~~~~i~y~~Q~~~~l~~~~tv~~~l~~~~~~~~~~~~~r~ 419 (632)
T PRK11147 343 QRGDKIALIG-PNGCGKTTLLKLMLGQLQADSG-R-IHCGTKLEVAYFDQYRAELDPEKTVMDNLAEGKQEVMVNGKPRH 419 (632)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCCCC-E-EEECCCCEEEEEHHHHHHCCCCCCHHHHHHHCCHHCCCCHHHHH
T ss_conf 7887799988-9884277999986066689987-7-99899870775515476459768699999732321011558999
Q ss_pred HHHHHHCCCCCEEEEECCCCCCCHHCCCHHH--HHHHHHHHHHCCCEEEECCCCC-CCHHHHHH----HHHCCCCCCCCC
Q ss_conf 7653202489806872487612032079999--9998999851288899738888-89899999----862012543578
Q gi|254780725|r 233 VSRLPVFYAENLSILTAPAMLSRTYDFDEKM--IVPVLDILEQIFPLVILDVPHV-WNSWTQEV----LTLSDKVVITTS 305 (427)
Q Consensus 233 l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~--l~~ll~~l~~~yd~VIiD~p~~-~~~~~~~~----L~~AD~vviV~~ 305 (427)
+...+.. .++.+.........++.+. --.+...+....+++|+|=|.. .+-.+..+ |..-+-.+++++
T Consensus 420 ~~~~L~~-----f~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~~y~Gtvl~VS 494 (632)
T PRK11147 420 VLGYLQD-----FLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTLLLVS 494 (632)
T ss_pred HHHHHHH-----HCCCHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEEE
T ss_conf 9999998-----57798896391553999999999999985779978999898765799999999999985898399997
Q ss_pred CCHHHHH
Q ss_conf 7768899
Q gi|254780725|r 306 LDLAGLR 312 (427)
Q Consensus 306 p~~~slr 312 (427)
-|..=+.
T Consensus 495 HDr~fl~ 501 (632)
T PRK11147 495 HDRQFVD 501 (632)
T ss_pred CCHHHHH
T ss_conf 9899998
No 366
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=93.38 E-value=0.58 Score=25.11 Aligned_cols=207 Identities=16% Similarity=0.169 Sum_probs=111.5
Q ss_pred CEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHHCCCCEEEC----CCCCHHHHHHHHHHC
Q ss_conf 49999805987-6778899988853289980899816871----89999999765626431----899989999976310
Q gi|254780725|r 79 DLIIVQTKVDS-REVLSALEPLAEVCDSGTKVIVIGDTND----VSLYRALISNHVSEYLI----EPLSVADIINSISAI 149 (427)
Q Consensus 79 ~~iivd~~~~~-~~~~~~l~~la~~~~p~~~Vivig~~~d----~~l~r~l~r~Gv~dyl~----~P~~~~~l~~ai~~~ 149 (427)
=+.+||..... .+-..-.+-|.. -+-+||++-.--| -..+-+.-+.|..+.+. .-....+|.+.+...
T Consensus 85 IlfVvD~~~git~~D~~i~~~Lrk---~~k~vilviNK~D~~~~~~~~~ef~~LGf~~~i~iSA~h~~Gi~~L~~~i~~~ 161 (438)
T PRK00093 85 ILFVVDGRAGLTPADEEIAKILRK---SNKPVILVVNKVDGKKMEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEL 161 (438)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 999983776898789999999997---39978999975566320345999998368981888530566989999999854
Q ss_pred CCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHH
Q ss_conf 23322234567537999746988775689999999999626994999978798986033438998789888631845612
Q gi|254780725|r 150 FTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRID 229 (427)
Q Consensus 150 ~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD 229 (427)
+....... ...-.||++| |--|||||+-=.| +.+ .++ +++- ..|++- |.+...
T Consensus 162 l~~~~~~~-~~~iriaiiG-rpNvGKStl~N~l---l~~---~r~-ivs~--~~GtTr------------D~i~~~---- 214 (438)
T PRK00093 162 LPEEEEEE-EDPIKIAIIG-RPNVGKSTLINAL---LGE---ERV-IVSD--IAGTTR------------DSIDTP---- 214 (438)
T ss_pred CCCCCCCC-CCCEEEEEEC-CCCCCHHHHHHHH---HHH---HHH-HCCC--CCCCCC------------CCEEEE----
T ss_conf 88554344-5560599955-8886556788876---543---332-0479--998511------------232679----
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-------------CHHHHHHHHH
Q ss_conf 433765320248980687248761203207999999989998512888997388888-------------9899999862
Q gi|254780725|r 230 KAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-------------NSWTQEVLTL 296 (427)
Q Consensus 230 ~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-------------~~~~~~~L~~ 296 (427)
+ .. ....|.++|++.-- ...+..++..
T Consensus 215 --~------~~--------------------------------~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~~~i~~ 254 (438)
T PRK00093 215 --F------ER--------------------------------DGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTLKAIER 254 (438)
T ss_pred --E------EE--------------------------------CCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf --9------98--------------------------------9967999989898765642137889999999999864
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCC
Q ss_conf 01254357877688999999999999819876753899956589875200599999984895
Q gi|254780725|r 297 SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGIT 358 (427)
Q Consensus 297 AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~ 358 (427)
||.+++|++.+..--..=.+++..+.+.+ +++.+++|+++.-.......+++.+.+...
T Consensus 255 ~dvvilviDa~~~~~~qD~~i~~~i~~~g---k~~ii~vNKwDLv~~~~~~~~~~~~~i~~~ 313 (438)
T PRK00093 255 ADVVLLVIDATEGITEQDLRIAGLALEAG---RALVIVVNKWDLVEKDSKTMEEVKEELRRR 313 (438)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECHHCCCCCHHHHHHHHHHHHHH
T ss_conf 46699999766588488899999999819---966999970222566389999999999975
No 367
>pfam02702 KdpD Osmosensitive K+ channel His kinase sensor domain. This is a family of KdpD sensor kinase proteins that regulate the kdpFABC operon responsible for potassium transport. The aligned region corresponds to the N-terminal cytoplasmic part of the protein which may be the sensor domain responsible for sensing turgor pressure.
Probab=93.37 E-value=0.36 Score=26.37 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=35.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
++.||.--|+|..-|||||--..+=|..+.+ .|.+|++-=...+
T Consensus 1 ~~rG~LkIylG~apGVGKTy~ML~eA~~l~~-~G~DVViG~vEth 44 (211)
T pfam02702 1 GRRGKLKIFLGAAPGVGKTYAMLSEAHELLE-RGVDVVIGYVETH 44 (211)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC
T ss_conf 9976168985359987789999999999997-8995699995379
No 368
>PRK08233 hypothetical protein; Provisional
Probab=93.31 E-value=0.59 Score=25.05 Aligned_cols=156 Identities=13% Similarity=0.117 Sum_probs=76.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
..||++.| --|.||||+|-.|...+ .+..++..|.+. +...+ ..+.++...+...|
T Consensus 3 p~IIgIaG-gSgSGKTtla~~l~~~l---~~~~~~~~D~y~--------~~~~~-~~~~~~~~~~~~~d----------- 58 (182)
T PRK08233 3 TKIITIAA-VSGGGKTTLTERLTHKL---KNSKALYFDRYD--------FDNCP-EDICKWIDDGANYS----------- 58 (182)
T ss_pred CEEEEEEC-CCCCCHHHHHHHHHHHC---CCCEEEEECCCC--------CCCCH-HHHHHHHCCCCCCC-----------
T ss_conf 88999968-88678999999999974---677589966655--------54687-88998740677866-----------
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH--HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89806872487612032079999999899985--1288899738888898999998620125435787768899999999
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILE--QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLI 318 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~--~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll 318 (427)
.+....+..-+..++ ..+|+||+|.+-.+... ..-..-|.-+.|-+| ..+|=++|+.
T Consensus 59 -----------------~~d~~~l~~~l~~l~~~~~~d~iIvEgil~l~~~--~lr~l~D~kIfVdtp--~Dirl~RRi~ 117 (182)
T PRK08233 59 -----------------EWVLTPLIKDIQELIAKSNVDYIIVDYPFAYLNS--EMRQYIDVTIFIDTP--LDIAMARRIL 117 (182)
T ss_pred -----------------HHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHCCH--HHHHHHCEEEEECCC--HHHHHHHHHH
T ss_conf -----------------6669999999999855998728999644362689--899771878997286--8999999888
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECC
Q ss_conf 99998198767538999565898752005999999848953799068
Q gi|254780725|r 319 DVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPF 365 (427)
Q Consensus 319 ~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~ 365 (427)
.-+++.+. +.+.-|++++....++ ....|.+......+..||.
T Consensus 118 RDi~Er~g--r~i~svl~qY~~~VrP--m~~~fvePsk~~ADiIId~ 160 (182)
T PRK08233 118 RDFKEDTG--NEIHNDLKHYLNYARP--LYLEALDTVKPNADIVLDG 160 (182)
T ss_pred HHHHHHCC--CCHHHHHHHHHHHHHH--HHHHHHCHHHHCCCEEEEC
T ss_conf 88777618--8789999999998788--9999857003219689858
No 369
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.30 E-value=0.48 Score=25.62 Aligned_cols=33 Identities=12% Similarity=0.257 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 718999999976562643189998999997631
Q gi|254780725|r 116 NDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 116 ~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
.|+.||-+..-.|-+|.=..|....-+.=.+-|
T Consensus 322 e~~Ql~Yqi~l~gr~dl~~ap~~~~g~eM~lLR 354 (704)
T PRK08691 322 EQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLR 354 (704)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 999999999982202255699702539999999
No 370
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.24 E-value=0.32 Score=26.68 Aligned_cols=39 Identities=23% Similarity=0.053 Sum_probs=30.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHC-CCCEEEEECCCC
Q ss_conf 7999746988775689999999999626-994999978798
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVF-AMETLLADLDLP 202 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~-~~~VlLvDlDl~ 202 (427)
+|++.| .-|+||||+|-.|...|.+.. +.+|.++-.|-.
T Consensus 1 IIGIaG-~sgSGKST~a~~l~~~l~~~~~~~~v~ii~~D~f 40 (220)
T cd02025 1 IIGIAG-SVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 989788-9987799999999998600269994899978787
No 371
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.24 E-value=0.38 Score=26.25 Aligned_cols=75 Identities=15% Similarity=0.215 Sum_probs=46.6
Q ss_pred HHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 9999976562643189998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 121 ~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
=++...+...||-..+.+..+.+.++......-. .+..+|=+-++| .-|+|||.++..+|..|++ .|.+|+++-.
T Consensus 119 pk~i~~as~~d~~~~d~~R~~a~~~a~~F~~~y~--~~~~~kGlyl~G-~~G~GKTyL~~aian~La~-~g~~v~~v~~ 193 (306)
T PRK08939 119 PKDLLQATLADIDLDDLDRLDALMAALDFLEAYK--PGEKVKGLYLYG-DFGVGKTYLLAAIANELAK-KGVSSTLVHF 193 (306)
T ss_pred CHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHC--CCCCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEH
T ss_conf 7999809898648897789999999999999737--698887788989-9999899999999999998-6992999875
No 372
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=93.24 E-value=0.61 Score=24.97 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=70.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|.++++==|.||||+--++.... ..+.++.++=-|. |... +|..++.+. ...
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~--g~~~--------------------iD~~ll~~~----~~~ 53 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDF--GETG--------------------IDAELLRET----GAE 53 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECC--CCHH--------------------HHHHHHHHC----CCE
T ss_conf 69993488788999999999844--4898479999336--5302--------------------079998706----961
Q ss_pred EEEEECCCCCCC-HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH---HHCCCCCCCCCCCH-HHHHH-HHHH
Q ss_conf 068724876120-320799999998999851288899738888898999998---62012543578776-88999-9999
Q gi|254780725|r 244 LSILTAPAMLSR-TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVL---TLSDKVVITTSLDL-AGLRN-SKNL 317 (427)
Q Consensus 244 L~lL~a~~~~~~-~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L---~~AD~vviV~~p~~-~slr~-a~~l 317 (427)
+.-+..+--.-. ..++ ...+..+.+.-...+|+|+|.+...+.+....-+ ...+.++.++++.. ..-.+ ...+
T Consensus 54 v~el~~GciCc~~~~d~-~~~l~~l~~~~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~ 132 (174)
T pfam02492 54 IVELNNGCICCTIREDL-SMVLEALLELKLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKA 132 (174)
T ss_pred EEEECCCCCCCCCCHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHH
T ss_conf 89974886645433369-99999998557899999999587667707777653202654599999723433002007899
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999819876753899956589875200599999984
Q gi|254780725|r 318 IDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPL 355 (427)
Q Consensus 318 l~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~l 355 (427)
.+ +....+ .+|+|+.+.-...+. .+.+++.+
T Consensus 133 ~~---Qi~~AD---~vvlNK~Dl~~~~~~-l~~~~~~i 163 (174)
T pfam02492 133 PD---QIAFAD---LIVINKTDLAPAVGA-LEKLEADL 163 (174)
T ss_pred HH---HHHHCC---EEEEEHHHCCCCHHH-HHHHHHHH
T ss_conf 99---998769---999846653782769-99999999
No 373
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=93.21 E-value=0.26 Score=27.25 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=50.6
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 1288899738888--89899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
..|-+.++|+|.. +.......+..+|..++|+..+-.-..++++.+..++..+. ++.+++|+++.-
T Consensus 66 ~~~~i~~IDtPGH~df~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~---~~iv~iNK~D~v 133 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCK---KLIVVLNKIDLI 133 (192)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCC---CEEEEEECCCCC
T ss_conf 74589998779838899888888743265279998788887899999999998589---979999741278
No 374
>PRK10419 nikE nickel transporter ATP-binding protein; Provisional
Probab=93.20 E-value=0.1 Score=29.68 Aligned_cols=43 Identities=23% Similarity=0.203 Sum_probs=27.8
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-..|.+++++| ..|+||||++--++-.+.- ....+.+-+-|+.
T Consensus 35 i~~GE~l~ivG-eSGsGKSTL~r~i~gl~~p-~sG~I~~~g~~l~ 77 (266)
T PRK10419 35 LKSGETVALLG-RSGCGKSTLARLLVGLESP-SQGNISWRGEPLA 77 (266)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCEEEEECCEECC
T ss_conf 88998999999-9997799999999669999-9629988999567
No 375
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=93.17 E-value=0.62 Score=24.91 Aligned_cols=118 Identities=14% Similarity=0.214 Sum_probs=75.3
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--89899999862012543578-77688999999999999819-876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++.. +......-...||-+++|.+ .+..++.+++..+..+.+.. ....++.+|.|+.+.+. ..+..
T Consensus 51 ~v~l~iwDtaGqe~~r~l~~~Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~--~~~~~ 128 (183)
T cd04152 51 GITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN--ALSVS 128 (183)
T ss_pred EEEEEEEECCCCCCCCEEHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCC--CCCHH
T ss_conf 6799999789873451008767467867899996776889999999999997321237962999986677766--87889
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHCCCC
Q ss_conf 999984895379906879999998847961898889--99899999999999852212
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i~gr~~ 405 (427)
++++.++..- -+...+-.+.+.+. +.-+.++|..|++.|..+..
T Consensus 129 ei~~~l~l~~------------~~~~~~~~i~~tSA~tG~gI~e~f~~L~~~i~~r~~ 174 (183)
T cd04152 129 EVEKLLALHE------------LSASTPWHVQPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred HHHHHHHHHH------------HHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999971999------------866699899972799796989999999999999998
No 376
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=93.14 E-value=0.52 Score=25.39 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=19.5
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 379997469887756899999999996269949999
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
-|+-|+-++ .|-|..=..+|..|-+ .+++|+||
T Consensus 120 ~IlfVvD~~--~glt~~D~eia~~LRk-~~kpviLV 152 (474)
T PRK03003 120 AVLFVVDAT--VGATATDEAVARLLRR-SGKPVFLA 152 (474)
T ss_pred EEEEEEECC--CCCCHHHHHHHHHHHH-CCCCEEEE
T ss_conf 999999689--8988789999999875-39977998
No 377
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=93.08 E-value=0.23 Score=27.52 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=44.2
Q ss_pred CCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 88899738888--898999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 275 FPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 275 yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
..+.++|+|.. +...+...+..+|.+++|+..+-.-.......+..++..+. +++.+|+|+++.-.
T Consensus 51 ~~i~~iDtPGh~~~~~~~~~~~~~aD~~llVvda~~g~~~q~~e~~~~~~~~~i--~~~ivvlNK~D~v~ 118 (164)
T cd04171 51 KRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGI--KRGLVVLTKADLVD 118 (164)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCC--CCEEEEEECCCCCC
T ss_conf 899999487879999999998742672589986177888889999999987388--72787346342579
No 378
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=93.07 E-value=0.64 Score=24.82 Aligned_cols=186 Identities=12% Similarity=0.121 Sum_probs=82.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCC-EEEEECCCCCCCCHHHCCCCC
Q ss_conf 899999763102332223456753799974698877568999999999962---6994-999978798986033438998
Q gi|254780725|r 139 VADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV---FAME-TLLADLDLPYGTANINFDKDP 214 (427)
Q Consensus 139 ~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~---~~~~-VlLvDlDl~~g~~~~~l~~~~ 214 (427)
..++..+|+.+.. |+..+ .=|-++| |-|+|||.++-++.-.|.+. ++.+ +..+-.|++.-++...
T Consensus 26 I~~l~~~L~~~l~---PG~~P--~Ni~iYG-kTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~----- 94 (383)
T TIGR02928 26 IEELAKALRPILR---PGSRP--SNIFIYG-KTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQ----- 94 (383)
T ss_pred HHHHHHHHHHHHC---CCCCC--CCEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH-----
T ss_conf 9999999887506---74898--7258878-88987889999999999998622699715899977854684699-----
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHH
Q ss_conf 7898886318456124337653202489806872487612032079999999899985-128889973888889899999
Q gi|254780725|r 215 INSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEV 293 (427)
Q Consensus 215 ~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~ 293 (427)
.+..++ ..+- +...+..+-.. ..-..+.+..+.+.+. ..++.+|| +
T Consensus 95 --~~~~L~-----------~~ln-~~~~~~~vP~t-------G~s~~~~~~~l~~~l~~~~~~~~~i------------v 141 (383)
T TIGR02928 95 --VLVELA-----------NQLN-RRGSGEEVPTT-------GLSTSEVFRELYKELNRERGDSLII------------V 141 (383)
T ss_pred --HHHHHH-----------HHHC-CCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCCEEEE------------E
T ss_conf --999999-----------9851-57788889887-------7878999999999983201887999------------8
Q ss_pred HHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCEEE--EECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 8620125435787768899-9999999999819876753899--956589875200599999984895379906879999
Q gi|254780725|r 294 LTLSDKVVITTSLDLAGLR-NSKNLIDVLKKLRPADKPPYLV--LNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVF 370 (427)
Q Consensus 294 L~~AD~vviV~~p~~~slr-~a~~ll~~l~~~~~~~~~~~iV--lNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~ 370 (427)
|+.-|.++ --..+-++.. -.+.|.+.=........++.+| -|-... +..++ .+++..|.-+-...=|||-.-.
T Consensus 142 LDEiD~Lv-~~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvIgISND~~f--~~~Ld-~RVkSsL~~eei~FpPYdA~eL 217 (383)
T TIGR02928 142 LDEIDKLV-RKDDDDPAYSKLLYQLSRARENGDLENAKVGVIGISNDLKF--RENLD-PRVKSSLCEEEIVFPPYDAEEL 217 (383)
T ss_pred ECCCCHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHH--HHHCC-CCEECCCCCCCCEECCCCHHHH
T ss_conf 62310221-58888807878853433100035778853489998657143--64457-5301324874004079886999
Q ss_pred HH
Q ss_conf 99
Q gi|254780725|r 371 GM 372 (427)
Q Consensus 371 ~~ 372 (427)
.+
T Consensus 218 ~~ 219 (383)
T TIGR02928 218 RD 219 (383)
T ss_pred HH
T ss_conf 99
No 379
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=93.07 E-value=0.22 Score=27.72 Aligned_cols=37 Identities=14% Similarity=0.148 Sum_probs=26.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 567537999746988775689999999999626994999
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLL 196 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlL 196 (427)
-+.|.+++++| +-|+||||+.--++-.+.-. ..++.+
T Consensus 24 i~~Ge~~~IvG-~sGsGKSTLl~~l~g~~~~~-~G~I~~ 60 (218)
T cd03290 24 IPTGQLTMIVG-QVGCGKSSLLLAILGEMQTL-EGKVHW 60 (218)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEE
T ss_conf 86999999999-99980999999985556567-764998
No 380
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=93.06 E-value=0.64 Score=24.81 Aligned_cols=115 Identities=15% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 288899738888--898999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++.. +...+..-+..|+-+++|.+. +..|+.+...+++.+++......++.+|-|+++......++.++
T Consensus 48 ~v~l~IWDTaGqe~f~sl~~~yyr~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e 127 (202)
T cd04120 48 KIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQ 127 (202)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHH
T ss_conf 99999997988612452357887641445899856888999999999999997466887189876536505317879999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEECCCC--HHHHHHHHHHHHHHCCCCC
Q ss_conf 9998489537990687999999884-796189888999--8999999999998522122
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSAN-SGKMIHEVDPKS--AIANLLVDFSRVLMGRVTV 406 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~-~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~ 406 (427)
.++ -|.. +|....|.+.+. -+.+.|..|++.|..+...
T Consensus 128 ~~~------------------~A~~~~~~~f~EtSAkt~~nV~e~F~~l~~~i~~~~~~ 168 (202)
T cd04120 128 GEK------------------FAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMPL 168 (202)
T ss_pred HHH------------------HHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 999------------------99827998899925899969899999999999985876
No 381
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=92.99 E-value=0.66 Score=24.75 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=10.9
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 877568999999999962699499
Q gi|254780725|r 172 GVGSSTIAHNCAFSIASVFAMETL 195 (427)
Q Consensus 172 GvGkTTiA~nLA~~LA~~~~~~Vl 195 (427)
|+..+--... -..|++..+.+|+
T Consensus 230 G~~~~~a~~~-l~~lae~lg~PV~ 252 (568)
T PRK08327 230 GGRRAEAFAS-LDRLAEELGIPVV 252 (568)
T ss_pred CCCHHHHHHH-HHHHHHHCCCCEE
T ss_conf 7335789999-9999875499679
No 382
>PRK06526 transposase; Provisional
Probab=92.99 E-value=0.18 Score=28.16 Aligned_cols=116 Identities=13% Similarity=0.137 Sum_probs=68.3
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCE--------
Q ss_conf 306998999999861899849999805987677889998885328998089981687189999999765626--------
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSE-------- 131 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~d-------- 131 (427)
.+..|++.+.+.+..++.- ......+.|..|.+.. +....+-..-|.+.++|...
T Consensus 12 LrL~~ma~~~~~~~~~a~~---------~~~s~~e~L~~Lle~E--------~~~R~~rr~~rrlk~A~fp~~ktLe~fd 74 (254)
T PRK06526 12 LKAPSLAGAVERLAERARA---------ESWSHEEFLAACLQRE--------VAARESHGGEGRIRAARFPSRKSLEEFD 74 (254)
T ss_pred CCHHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCCCCCCHHHCC
T ss_conf 3837899999999988876---------5999999999999999--------9999998999999977979988987678
Q ss_pred EECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 431899989999976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 132 YLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 132 yl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
|-..|--....+..+..+ .--..+.=|.++| ..|+|||.+|+.++....+ .|.+|..+-++
T Consensus 75 ~~~~~~l~~~~i~~La~~------~fi~~~~Nvil~G-~~GtGKThLA~Alg~~A~~-~G~~v~f~~~~ 135 (254)
T PRK06526 75 FDHQRSLKRDTIAHLGTL------DFVTGKENVVFLG-PPGTGKTHLAIGLGIRACQ-AGHRVLFATAA 135 (254)
T ss_pred CCCCCCCCHHHHHHHHCC------CHHHCCCCEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEEHH
T ss_conf 656789899999998637------1776588789989-9998689999999999998-69967998779
No 383
>KOG2004 consensus
Probab=92.98 E-value=0.11 Score=29.45 Aligned_cols=32 Identities=31% Similarity=0.554 Sum_probs=27.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 567537999746988775689999999999626
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVF 190 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~ 190 (427)
.-.|+|++|+| --|||||+|+-++|.+|.+..
T Consensus 435 s~qGkIlCf~G-PPGVGKTSI~kSIA~ALnRkF 466 (906)
T KOG2004 435 SVQGKILCFVG-PPGVGKTSIAKSIARALNRKF 466 (906)
T ss_pred CCCCCEEEEEC-CCCCCCCCHHHHHHHHHCCCE
T ss_conf 67883799868-998773218999999848746
No 384
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=92.94 E-value=0.41 Score=26.04 Aligned_cols=70 Identities=14% Similarity=0.116 Sum_probs=43.1
Q ss_pred EECCCCCHH-HHHHHHHHC-CCCC-CCCCCCCCEEEEEEE-CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 431899989-999976310-2332-223456753799974-6988775689999999999626994999978798
Q gi|254780725|r 132 YLIEPLSVA-DIINSISAI-FTPQ-EEGKGSSGCSISFIG-SRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 132 yl~~P~~~~-~l~~ai~~~-~~~~-~~~~~~~grvIav~g-~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
|+.+|++.- .++-.+++. +... .......-.||+|.+ .-||+|||-++.-||-.|.+ .|.++.++==...
T Consensus 17 ~lL~PlS~ly~~~~~lr~~~y~~~~~~~~~~~vpVI~VGNitvGGtGKTP~v~~la~~l~~-~g~~~~IlSRGYg 90 (334)
T PRK00652 17 RLLLPLSWLYGLVSGLIRLSYRLGLARPYRFPVPVISVGNLTVGGNGKTPVVIWLAEQLQA-RGVKVGVVSRGYG 90 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECEEECCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf 9999999999999999999986056765558998999908887887779999999999997-6993678734667
No 385
>PTZ00301 uridine kinase; Provisional
Probab=92.93 E-value=0.26 Score=27.19 Aligned_cols=184 Identities=11% Similarity=0.123 Sum_probs=84.7
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCC-CCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHHHHC
Q ss_conf 379997469887756899999999996269-94999978798986033-4389987898886318456124337653202
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFA-METLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRLPVF 239 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~-~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~ 239 (427)
-||++.| -.|+||||+|.++...|-...+ .+|.++-.|...-+... -+......+ ...|+.+|-.++...+..
T Consensus 4 ~iIgIaG-gSgSGKTT~a~~i~~~l~~~~~~~~v~ii~~D~Yy~d~~~~~~~~~~~~N----fDhP~a~D~dLl~~~L~~ 78 (210)
T PTZ00301 4 TVIGISG-ASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTN----YDHPKSLEHDLLTTHLRE 78 (210)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCHHHCCCCC----CCCCCCCCHHHHHHHHHH
T ss_conf 8999968-87678999999999998761499807998367667787658865627889----998230369999999999
Q ss_pred CCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 48980687248761203207999999989998512888997388888-98999998620125435787768899999999
Q gi|254780725|r 240 YAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLI 318 (427)
Q Consensus 240 ~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll 318 (427)
...|-.+-- ..+++.......-...+ .-.++||++--..+ .+..+..+.. .|++=+.. .+|-.+|+.
T Consensus 79 Lk~Gk~I~~------P~Ydf~~h~R~~~~~~i-~p~~vIIvEGi~~l~~~~lr~l~Dl--kIFvd~~~---dirl~RRi~ 146 (210)
T PTZ00301 79 LKSGKTVQI------PQYDYVHHTRSDTAVTM-TPKSVLIVEGILLFTNAELRNEMDC--LIFVDTPL---DICLIRRAK 146 (210)
T ss_pred HHCCCCEEC------CCCCCCCCCCCCCEEEE-CCCCEEEEEEEHHCCCHHHHHHHCE--EEEECCCH---HHHHHHHHH
T ss_conf 976996344------66555677667970896-6885699971043078989977424--57734872---378899888
Q ss_pred HHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 9999819876753899956589875200599999984895379906879
Q gi|254780725|r 319 DVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 319 ~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~ 367 (427)
.-+.+.+.... -|+.|+....++ ..+.|-+......+.+||+.+
T Consensus 147 RDv~eRGr~~e---~Vi~qy~~~V~P--~~~~fI~P~k~~ADiIIp~~~ 190 (210)
T PTZ00301 147 RDMRERGRTFE---SVIEQYEATVRP--MYYAYVEPSKVYADIIVPSWK 190 (210)
T ss_pred HHHHHHCCCHH---HHHHHHHHHHCC--CHHHHCCHHHHCCCEEECCCC
T ss_conf 77887588999---999999966230--588768051633618978999
No 386
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=92.86 E-value=0.12 Score=29.35 Aligned_cols=24 Identities=38% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 799974698877568999999999
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~L 186 (427)
.|-++|+-.||||||+|..||..|
T Consensus 4 ~iiligG~sGvGKStla~~lA~rl 27 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHR 27 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 799985799887899999999974
No 387
>pfam01695 IstB IstB-like ATP binding protein. This protein contains an ATP/GTP binding P-loop motif. It is found associated with IS21 family insertion sequences. The function of this protein is unknown, but it may perform a transposase function.
Probab=92.85 E-value=0.23 Score=27.56 Aligned_cols=40 Identities=15% Similarity=0.260 Sum_probs=33.0
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 675379997469887756899999999996269949999787
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..++-|.++| .-|+|||-+|+.++..+.+ .|.+|+.+-..
T Consensus 45 ~~~~Nlll~G-~~GtGKThLA~Ai~~~~~~-~g~~v~f~~~~ 84 (178)
T pfam01695 45 EQAENLLLLG-PPGVGKTHLACALGHQACR-AGYSVLFTRTP 84 (178)
T ss_pred HCCCCEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECH
T ss_conf 1587689989-9998789999999999998-69859999616
No 388
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=92.85 E-value=0.69 Score=24.62 Aligned_cols=142 Identities=20% Similarity=0.157 Sum_probs=66.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC------CCCCCHHHHHCCC-CCHHHH
Q ss_conf 675379997469887756899999999996269949999787989860334389------9878988863184-561243
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK------DPINSISDAIYPV-GRIDKA 231 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~------~~~~~l~d~l~~~-~rlD~~ 231 (427)
+.|..|+++| .-|+||||+.--|+-.+.-..| .+-+ .-....| ||.+ ++..++.+.+... ......
T Consensus 336 ~~GeriaIvG-~NGsGKSTLlk~L~G~l~p~~G-~i~~-~~~v~ig----y~~Q~~~~~l~~~~t~l~~~~~~~~~~~~~ 408 (638)
T PRK10636 336 VPGSRIGLLG-RNGAGKSTLIKLLAGELAPVSG-EIGL-AKGIKLG----YFAQHQLEFLRADESPLQHLARLAPQELEQ 408 (638)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHCCCCCCCCC-EEEE-CCCCCCC----CCHHHHHHHCCCHHHHHHHHHHHCHHHHHH
T ss_conf 3784799974-7871388999997288788885-6998-4444334----110767765061124999998857254699
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHH--HHHHHHHHHCCCEEEECCCCC-CCHHHHHHH----HHCCCCCCCC
Q ss_conf 376532024898068724876120320799999--998999851288899738888-898999998----6201254357
Q gi|254780725|r 232 FVSRLPVFYAENLSILTAPAMLSRTYDFDEKMI--VPVLDILEQIFPLVILDVPHV-WNSWTQEVL----TLSDKVVITT 304 (427)
Q Consensus 232 ~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l--~~ll~~l~~~yd~VIiD~p~~-~~~~~~~~L----~~AD~vviV~ 304 (427)
.+..++... .+.+..-......++.+.- -.+...+....++.|+|=|.. .+..+..+| ..-.-.++++
T Consensus 409 ~~r~~L~~f-----~f~~~~~~~~v~~LSGGEk~Rl~LA~~l~~~pnlLiLDEPTNhLDi~s~e~Le~aL~~y~Gtvl~V 483 (638)
T PRK10636 409 KLRDYLGGF-----GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVV 483 (638)
T ss_pred HHHHHHHHC-----CCCHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCEEEEE
T ss_conf 999999866-----889778639113399999999999999825998899858876688899999999998489839999
Q ss_pred CCCHHHHH
Q ss_conf 87768899
Q gi|254780725|r 305 SLDLAGLR 312 (427)
Q Consensus 305 ~p~~~slr 312 (427)
+-|..=+.
T Consensus 484 SHDr~fl~ 491 (638)
T PRK10636 484 SHDRHLLR 491 (638)
T ss_pred ECCHHHHH
T ss_conf 78999999
No 389
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=92.83 E-value=0.7 Score=24.60 Aligned_cols=69 Identities=12% Similarity=0.168 Sum_probs=54.8
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHC
Q ss_conf 49999805987677889998885328998089981687189999999765626431899989999976310
Q gi|254780725|r 79 DLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAI 149 (427)
Q Consensus 79 ~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~ 149 (427)
.+-.+|+.+..-+.+..++.|++.. |+--.|=.|...+..-.++++.+|++ |++.|....++++...+.
T Consensus 35 Gi~~iEVTl~tp~a~~~I~~l~~~~-~~~~~iGAGTVlt~e~~~~ai~aGA~-FiVSP~~~~~vi~~a~~~ 103 (206)
T PRK09140 35 GFRAIEIPLNSPDPFDSIAALVKAL-GDDALIGAGTVLSPEQVDRLADAGGR-LIVTPNIDPEVIRRAVAY 103 (206)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHC-CCCEEEEEEECCCHHHHHHHHHCCCC-EEECCCCCHHHHHHHHHC
T ss_conf 9988999179976999999999967-98659986204679999999985999-999999989999999982
No 390
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=92.82 E-value=0.076 Score=30.51 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=60.4
Q ss_pred ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCC----CEEEEEEC-C-CCHHHHHHHHHCCCCEEEC
Q ss_conf 0699899999986189984999980598767788999888532899----80899816-8-7189999999765626431
Q gi|254780725|r 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSG----TKVIVIGD-T-NDVSLYRALISNHVSEYLI 134 (427)
Q Consensus 61 ~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~----~~Vivig~-~-~d~~l~r~l~r~Gv~dyl~ 134 (427)
..|++.+=+.....-..|===+.+++.+=|.++...+.+-+..|.. +.=..+.. . .++. -++|+ + .
T Consensus 298 T~G~f~~~~~am~~l~~PlK~Ltnv~~~~Q~gl~aAe~~F~~lD~~~E~D~G~~~~~RPv~G~~e------FR~v~-~-~ 369 (603)
T TIGR02203 298 TVGDFVAFITAMILLIKPLKQLTNVSAPMQKGLAAAESVFTLLDSPPEKDTGTRALERPVRGRVE------FRNVT-F-R 369 (603)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEE------EEEEE-E-E
T ss_conf 63389999999999998887678765888777888877853127885434788268885112488------87666-6-5
Q ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 89998999997631023322234567537999746988775689999999999626994999978
Q gi|254780725|r 135 EPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 135 ~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
.|-+..+.++.+.- .-+.|++||.+| +.|.||||++.=+-...--..| + .|+|-
T Consensus 370 Yp~~~~~aL~~i~l--------~~~~G~~vALVG-RSGSGKsTlv~LlPRFy~p~~G-~-IllDG 423 (603)
T TIGR02203 370 YPGRDRPALDSISL--------VVEPGETVALVG-RSGSGKSTLVNLLPRFYEPDSG-Q-ILLDG 423 (603)
T ss_pred ECCCCHHHHCCCCC--------EECCCCEEEEEC-CCCCHHHHHHHHCCCCCCCCCC-C-EEECC
T ss_conf 37887241236665--------115873599870-6885389998552366045888-5-65278
No 391
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=92.79 E-value=0.7 Score=24.58 Aligned_cols=41 Identities=24% Similarity=0.180 Sum_probs=28.4
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|..++++| +-|+||||++--|...+--..| ++.+=+-|+
T Consensus 365 ~~Ge~vaIVG-~SGsGKSTL~~LL~rly~p~~G-~I~idG~di 405 (593)
T PRK10790 365 PSRNFVALVG-HTGSGKSTLASLLMGYYPLTEG-EIRLDGRPL 405 (593)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHCCCCCC-CCCCCCEEC
T ss_conf 8997899879-9988689999999985567899-416599324
No 392
>pfam09818 ABC_ATPase Predicted ATPase of the ABC class. Members of this family include various bacterial predicted ABC class ATPases.
Probab=92.78 E-value=0.17 Score=28.35 Aligned_cols=118 Identities=17% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCC-
Q ss_conf 9849999805987677889998885328998089981687189999999765626431899989999976310233222-
Q gi|254780725|r 77 TPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEE- 155 (427)
Q Consensus 77 ~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~- 155 (427)
+|.=+=+++..+....+..+.- ..|+-+||-|..--=++..+++..||.+ .-|-+-.|++-+-.....-..+
T Consensus 220 SP~sL~v~~~lP~~g~v~GMGI-----p~GITlIvGGGyHGKSTLL~Ale~GVYn--HipGDGRE~VvT~~~avKiRAED 292 (447)
T pfam09818 220 SPESLEVEIELPNGGTVSGMGI-----PKGITLIVGGGYHGKSTLLEALERGVYD--HIPGDGREFVVTDPDAVKIRAED 292 (447)
T ss_pred CCCCEEEEEECCCCCEEEECCC-----CCCEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCEEEEEECCCEEEEEECC
T ss_conf 9850389998899985564564-----7766999789877678899999827777--78899807999659658888458
Q ss_pred -------------CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf -------------345675379997469887756899999999996269949999787989
Q gi|254780725|r 156 -------------GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 156 -------------~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
..-+.|+--.-++..-..|.|+-|+|+.-+| ..|.+++|||-|...
T Consensus 293 GR~V~~vDIS~FI~~LP~G~dT~~FsT~~ASGSTSqAAnI~Eal--EaGa~~lLIDEDTsA 351 (447)
T pfam09818 293 GRSVHGVDISPFINNLPPGKDTTDFSTEDASGSTSQAANIQEAL--EAGASLLLIDEDTSA 351 (447)
T ss_pred CCEEECEECHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCC
T ss_conf 84462412338784099999877312589871699999999999--748978998356431
No 393
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=92.74 E-value=0.71 Score=24.53 Aligned_cols=42 Identities=26% Similarity=0.229 Sum_probs=28.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 67537999746988775689999999999626994999978798
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
+.|+.++++| .-|+||||++.=|...+--. ..++.+=+-|+.
T Consensus 347 ~~Ge~vaiVG-~SGsGKSTL~~LL~r~y~p~-~G~I~idG~di~ 388 (547)
T PRK10522 347 KRGELLFLIG-GNGSGKSTLAMLLTGLYQPQ-SGEILLDGKPVT 388 (547)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCEECC
T ss_conf 5998899989-99997799999982896699-986989999999
No 394
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=92.73 E-value=0.66 Score=24.76 Aligned_cols=83 Identities=17% Similarity=0.197 Sum_probs=57.6
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--989999986201254357877-68899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++... .......+..+|.+++|.+.+ ..++..++..+..+ ........++.++.|+.+.+. ..+.+
T Consensus 57 ~~~l~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~--~~~~~ 134 (173)
T cd04154 57 GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPG--ALSEE 134 (173)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC--CCCHH
T ss_conf 9999999668860200589997226653899985565788999999999998635415984799987656777--88999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
++.+.++..
T Consensus 135 ei~~~l~l~ 143 (173)
T cd04154 135 EIREALELD 143 (173)
T ss_pred HHHHHHHHH
T ss_conf 999998687
No 395
>KOG1805 consensus
Probab=92.73 E-value=0.41 Score=26.00 Aligned_cols=129 Identities=16% Similarity=0.179 Sum_probs=66.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCC----------CCCCHHHHHCCCC----
Q ss_conf 53799974698877568999999999962699499997879898603343899----------8789888631845----
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKD----------PINSISDAIYPVG---- 226 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~----------~~~~l~d~l~~~~---- 226 (427)
++-++.+=+=.|+||||+-+.|=..|.. .|++|||.-.-.. .--++...+. ....+.+.++...
T Consensus 684 aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsyThs-AVDNILiKL~~~~i~~lRLG~~~kih~~v~e~~~~~~ 761 (1100)
T KOG1805 684 AEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSYTHS-AVDNILIKLKGFGIYILRLGSEEKIHPDVEEFTLTNE 761 (1100)
T ss_pred CCCHHEEECCCCCCCHHHHHHHHHHHHH-CCCEEEEEEHHHH-HHHHHHHHHHCCCCCEEECCCCCCCCHHHHHHHCCCC
T ss_conf 0332203269989812259999999997-3881899850567-8899999875067110344872224468998712344
Q ss_pred -CH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC-CHHHHHHHHHCCCCCCC
Q ss_conf -61-2433765320248980687248761203207999999989998512888997388888-98999998620125435
Q gi|254780725|r 227 -RI-DKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW-NSWTQEVLTLSDKVVIT 303 (427)
Q Consensus 227 -rl-D~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~-~~~~~~~L~~AD~vviV 303 (427)
.. +-..++..+ +...+.+.-- ..+. ..+ .-++.|||+|||=..+. -+.....|..+...|+|
T Consensus 762 ~s~ks~~~l~~~~----~~~~IVa~TC-----lgi~----~pl--f~~R~FD~cIiDEASQI~lP~~LgPL~~s~kFVLV 826 (1100)
T KOG1805 762 TSEKSYADLKKFL----DQTSIVACTC-----LGIN----HPL--FVNRQFDYCIIDEASQILLPLCLGPLSFSNKFVLV 826 (1100)
T ss_pred CCHHHHHHHHHHH----CCCCEEEEEC-----CCCC----CHH--HHCCCCCEEEECCCCCCCCCHHHHHHHHCCEEEEE
T ss_conf 5453399999972----8976799971-----5788----655--52142678998651111434212102112358996
Q ss_pred CCC
Q ss_conf 787
Q gi|254780725|r 304 TSL 306 (427)
Q Consensus 304 ~~p 306 (427)
-++
T Consensus 827 GDh 829 (1100)
T KOG1805 827 GDH 829 (1100)
T ss_pred CCC
T ss_conf 463
No 396
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.72 E-value=0.23 Score=27.51 Aligned_cols=36 Identities=17% Similarity=0.226 Sum_probs=29.7
Q ss_pred EEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 9746988775689999999999626994999978798
Q gi|254780725|r 166 FIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 166 v~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
.+.+.-|+||||+|.++++..++ .|.+|+.+-++-.
T Consensus 3 Li~G~pGsGKT~~a~qfl~~~a~-~ge~~lyis~eE~ 38 (187)
T cd01124 3 LLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEES 38 (187)
T ss_pred EEEECCCCCHHHHHHHHHHHHHH-CCCCEEEEEECCC
T ss_conf 58768999999999999999987-6997899995079
No 397
>PRK08904 consensus
Probab=92.64 E-value=0.74 Score=24.45 Aligned_cols=86 Identities=10% Similarity=0.126 Sum_probs=60.6
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
++..+.+.|.+....--.-.+=++|+.+...+.++.++.+++.. |+. +|=.|...+..-.++++.+|++ |++.|..-
T Consensus 16 ir~~~~~~a~~~a~al~~~Gi~~iEiTlrtp~a~~~i~~l~~~~-p~~-~vGaGTVl~~e~~~~a~~aGA~-FiVSP~~~ 92 (207)
T PRK08904 16 MAIDDLSTAVDLSRALVEGGIPTLEITLRTPVGLDAIRLIAKEV-PNA-IVGAGTVTNPEQLKAVEDAGAV-FAISPGLH 92 (207)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CCC-EEEEEECCCHHHHHHHHHCCCC-EEECCCCC
T ss_conf 97699999999999999879988999579913999999999868-987-6855313689999999984999-99848998
Q ss_pred HHHHHHHHH
Q ss_conf 999997631
Q gi|254780725|r 140 ADIINSISA 148 (427)
Q Consensus 140 ~~l~~ai~~ 148 (427)
.++++...+
T Consensus 93 ~~v~~~a~~ 101 (207)
T PRK08904 93 ESLAKAGHN 101 (207)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 398
>PRK09183 transposase/IS protein; Provisional
Probab=92.62 E-value=0.25 Score=27.36 Aligned_cols=112 Identities=11% Similarity=0.115 Sum_probs=65.0
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
.+..|++++.+.+..++.- +.....+.|..|.+.. +.....-.+-|.+.+++.. .+-+.
T Consensus 15 LkL~~m~~~~~~~~~~a~~---------~~~s~~e~L~~Ll~~E--------~~~R~~rr~~r~lk~A~fp----~~ktl 73 (258)
T PRK09183 15 LQLESLISAAPALAQQAVD---------QEWSYMDFLEHLLHEE--------KLARHQRKQAMYTRMAAFP----AVKTF 73 (258)
T ss_pred CCCHHHHHHHHHHHHHHHH---------CCCCHHHHHHHHHHHH--------HHHHHHHHHHHHHHHCCCC----CCCCH
T ss_conf 7831899999999998876---------3999999999999999--------9999999999999977999----98777
Q ss_pred HHH------------HHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 999------------9976310233222345675379997469887756899999999996269949999787
Q gi|254780725|r 140 ADI------------INSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 140 ~~l------------~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
+++ +..+..+ .--..+.-|.++| .-|+|||-+|+.||....+ .|.+|..+.+.
T Consensus 74 e~fDf~~~~~l~~~~i~~La~~------~fi~~~~Nvil~G-~~GtGKThLA~Alg~~A~~-~G~~v~f~~~~ 138 (258)
T PRK09183 74 EEYDFTFATGAPQKQLQSLRSL------SFIERNENIVLLG-PSGVGKTHLAIALGYEAVR-AGIKVRFTTAA 138 (258)
T ss_pred HHCCCCCCCCCCHHHHHHHHCC------CHHHCCCCEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEHH
T ss_conf 5556546886238999988258------1665588679989-9998689999999999998-79939997899
No 399
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=92.61 E-value=0.74 Score=24.42 Aligned_cols=107 Identities=11% Similarity=0.210 Sum_probs=75.6
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 1288899738888--898999998620125435787-7688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
..+.+-|.|++.. +.......+..|+-+++|.+- +..|+.+.+.+++.+++..+ +.++.+|-|+++...+ ..
T Consensus 47 ~~~~l~iwDtaG~e~f~~~~~~y~~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~-~~p~ilVgNK~DL~~~--~~-- 121 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRP-EIPCIVVANKIDLDPS--VT-- 121 (161)
T ss_pred EEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCH--HH--
T ss_conf 999999997999843432469973568767999968977889999999999998686-9989999997117742--58--
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
. +....|..+|.+..|.+.+. -+.+.|.+|++.+.
T Consensus 122 ---------------~--~~~~~a~~~~~~f~etSAk~g~nV~e~F~~l~~~~i 158 (161)
T cd04124 122 ---------------Q--KKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKLAV 158 (161)
T ss_pred ---------------H--HHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf ---------------9--999999986991999907838097999999999998
No 400
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.60 E-value=0.6 Score=25.01 Aligned_cols=53 Identities=23% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC---CCCCCHHHCCCC
Q ss_conf 56753799974698877568999999999962699499997879---898603343899
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL---PYGTANINFDKD 213 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl---~~g~~~~~l~~~ 213 (427)
-..|..++++| ..||||||+---+|-... ...-.+.+|-.. +..+.++.|...
T Consensus 26 v~~GEfvsilG-pSGcGKSTLLriiAGL~~--p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 26 VEKGEFVAILG-PSGCGKSTLLRLIAGLEK--PTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHCCCC--CCCCEEEECCCCCCCCCCCEEEEECCC
T ss_conf 77997999989-997889999999968787--777559988821578998779992667
No 401
>PRK08118 topology modulation protein; Reviewed
Probab=92.60 E-value=0.2 Score=27.88 Aligned_cols=94 Identities=19% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
+-|.|+| ..|+||||+|..|+.. .+.+++-+|- +...
T Consensus 2 ~rI~IiG-~~GsGKSTlAr~L~~~----~~ip~~~LD~-l~w~------------------------------------- 38 (167)
T PRK08118 2 KKIILIG-SGGSGKSTLARQLGEK----LNIPVHHLDA-LFWK------------------------------------- 38 (167)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHH----HCCCEEECCC-EEEC-------------------------------------
T ss_conf 6799988-9998799999999998----8969796443-4766-------------------------------------
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 980687248761203207999999989998512888997388888989999986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~ 313 (427)
++ ....+.+.+...++.+-.. |-=|+|- ..+.....-+..||.|+..--|-..++..
T Consensus 39 ------~~------w~~~~~~e~~~~~~~~~~~-~~WIidG--ny~~~~~~r~~~aD~iI~Ld~p~~~~~~r 95 (167)
T PRK08118 39 ------PN------WEGVPKEEQRTVQNELVKE-DEWIIDG--NYGGTMDIRLNAADTIIFLDIPRTICLYR 95 (167)
T ss_pred ------CC------CCCCCHHHHHHHHHHHHHC-CCEEEEC--CCHHHHHHHHHHCCEEEEECCCHHHHHHH
T ss_conf ------89------9468889999999999838-9879947--71779987797699999985989999999
No 402
>KOG1534 consensus
Probab=92.57 E-value=0.75 Score=24.39 Aligned_cols=104 Identities=15% Similarity=0.105 Sum_probs=61.9
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
+-|+| --|.||||...++-...- ..|+.+-+|.||+.. ..|+-+..-.+.|++. +|.+.-+ +.-.+.|
T Consensus 6 ~lV~G-pAgSGKSTyC~~~~~h~e-~~gRs~~vVNLDPAa----e~f~y~~~iDiRdlIs----vdDVmEd--l~~GPNG 73 (273)
T KOG1534 6 QLVMG-PAGSGKSTYCSSMYEHCE-TVGRSVHVVNLDPAA----EHFNYPVTIDIRDLIS----VDDVMED--LDLGPNG 73 (273)
T ss_pred EEEEC-CCCCCCCHHHHHHHHHHH-HHCCEEEEEECCHHH----HHHCCCCCCCHHHHCC----HHHHHHH--HCCCCCC
T ss_conf 89874-678884307899999998-628545886268788----8608962002887521----8888888--6349986
Q ss_pred EEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCC
Q ss_conf 06872487612032079999999899985-128889973888889
Q gi|254780725|r 244 LSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWN 287 (427)
Q Consensus 244 L~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~ 287 (427)
.+--..+.-.+.+.++.+..- -.-||.|+|||.+..
T Consensus 74 --------gLv~cmEyl~~NldwL~~~~Gd~eddylifDcPGQIE 110 (273)
T KOG1534 74 --------GLVYCMEYLLENLDWLEEEIGDVEDDYLIFDCPGQIE 110 (273)
T ss_pred --------CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCEEE
T ss_conf --------5203899999778887754067567779984798167
No 403
>KOG4658 consensus
Probab=92.56 E-value=0.2 Score=27.92 Aligned_cols=44 Identities=16% Similarity=0.325 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 998999997631023322234567537999746988775689999999999
Q gi|254780725|r 137 LSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 137 ~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
+..++.++.+-+.+..... .+++++| -||+||||+|..+=....
T Consensus 161 VG~e~~~ekl~~~L~~d~~------~ivgi~G-MGGvGKTTL~~qi~N~~~ 204 (889)
T KOG4658 161 VGLETMLEKLWNRLMEDDV------GIVGIYG-MGGVGKTTLARQIFNKFD 204 (889)
T ss_pred CCHHHHHHHHHHHHCCCCC------CEEEEEC-CCCCCHHHHHHHHHHCCH
T ss_conf 4688999999998404799------6899988-970349999999841331
No 404
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.54 E-value=0.76 Score=24.37 Aligned_cols=87 Identities=11% Similarity=0.138 Sum_probs=59.7
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
++.-....|......--.-.+=++|+.....+.++.++.|++.. |+. .|=.|..-|..-.++++.+|+. |++.|...
T Consensus 19 lr~~~~~~a~~~~~al~~gGi~~iEiTl~t~~a~~~I~~l~~~~-p~~-~iGaGTV~~~e~~~~a~~aGA~-FiVSP~~~ 95 (210)
T PRK07455 19 IRAPDLELGLQMAEAVAAGGMRLIEITWNSDQPAELISQLREKL-PEC-IIGTGTLLTLEDLEEAIAAGAQ-FCFTPHVD 95 (210)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC-CCC-EEEEEECCCHHHHHHHHHCCCC-EEECCCCC
T ss_conf 97599999999999999879988999689988999999999878-996-8988818789999999986999-99868888
Q ss_pred HHHHHHHHHC
Q ss_conf 9999976310
Q gi|254780725|r 140 ADIINSISAI 149 (427)
Q Consensus 140 ~~l~~ai~~~ 149 (427)
.++++...+.
T Consensus 96 ~~vi~~a~~~ 105 (210)
T PRK07455 96 LELIQAAVAA 105 (210)
T ss_pred HHHHHHHHHC
T ss_conf 9999999982
No 405
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=92.42 E-value=0.39 Score=26.12 Aligned_cols=67 Identities=9% Similarity=0.020 Sum_probs=49.6
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 28889973888889--8999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
.+.+.++|+|.... ..+...+..+|.+++|+...-.-..+++..+..++.++. .++.+++|+++...
T Consensus 64 ~~~~~~IDtPGH~dF~~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi--~~iiV~iNK~D~~~ 132 (195)
T cd01884 64 NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGV--PYIVVFLNKADMVD 132 (195)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCC--CCEEEEEECCCCCC
T ss_conf 8169962689607788899863511362689985277874789999999998099--96279996877898
No 406
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=92.42 E-value=0.39 Score=26.16 Aligned_cols=65 Identities=11% Similarity=0.077 Sum_probs=45.9
Q ss_pred CCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 88899738888--8989999986201254357877688-9999999999998198767538999565898
Q gi|254780725|r 275 FPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAG-LRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 275 yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~s-lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
+.|.++|+|.. +..........||..++|+..+-.. --++++-+..++.++. +.+-+++|+++..
T Consensus 83 r~~tiiD~PGH~df~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv--~~iIV~vNKmDlv 150 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGL--KHIIIVQNKIDLV 150 (203)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEEECCCCC
T ss_conf 4799986898799999999766434766898643667750779999999998499--8636775077778
No 407
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.42 E-value=0.79 Score=24.27 Aligned_cols=49 Identities=22% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC
Q ss_conf 45675379997469887756899999999996269949999787989860334389
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK 212 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~ 212 (427)
..+.|..+.|+|+ ||+|- ++.++|+..|.+|..+|.+..--..+.-||.
T Consensus 163 ~v~~g~~V~V~G~-G~iGl------~a~~~ak~~Ga~Vi~vd~~~~rle~a~~~Ga 211 (349)
T TIGR03201 163 GLKKGDLVIVIGA-GGVGG------YMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCCCCEEEEECC-CHHHH------HHHHHHHHCCCEEEEEECCHHHHHHHHHCCC
T ss_conf 7899988999897-48999------9999999859979999499999999996499
No 408
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=92.37 E-value=0.63 Score=24.88 Aligned_cols=59 Identities=22% Similarity=0.282 Sum_probs=29.0
Q ss_pred HHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCC--HHHHHHHHHHHCCC
Q ss_conf 62012543578776889999999999998198767538999565898752--00599999984895
Q gi|254780725|r 295 TLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKP--EISISDFCAPLGIT 358 (427)
Q Consensus 295 ~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~--~i~~~~~~~~lg~~ 358 (427)
..+|.+++|.+.+- +..-..+...+... ..++.+|+|+++..+.. .+..+.+++.++.+
T Consensus 73 ~~~d~vl~vvD~~~--~~~~l~~~~~l~~~---~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~~ 133 (158)
T cd01879 73 EKPDLIVNVVDATN--LERNLYLTLQLLEL---GLPVVVALNMIDEAEKRGIKIDLDKLSELLGVP 133 (158)
T ss_pred CCCCCEEEEEECCH--HHHHHHHHHHHHHC---CCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCCC
T ss_conf 17871799977740--67768999999865---998899940277655225466799999871994
No 409
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.34 E-value=0.16 Score=28.58 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 56753799974698877568999999999
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
-+.|.+++++| +-|+||||+.--++-.+
T Consensus 28 i~~Ge~~~IvG-~sGsGKSTLl~~i~G~~ 55 (204)
T cd03250 28 VPKGELVAIVG-PVGSGKSSLLSALLGEL 55 (204)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHCCCC
T ss_conf 76998999999-99985899999981895
No 410
>PRK07261 topology modulation protein; Provisional
Probab=92.33 E-value=0.23 Score=27.52 Aligned_cols=32 Identities=31% Similarity=0.386 Sum_probs=23.8
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7999746988775689999999999626994999978
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
-|.|+| -+|.||||+|-.|+. ..+.+++-+|.
T Consensus 2 rI~IiG-~sGsGKSTlAr~L~~----~~~ip~~~LD~ 33 (171)
T PRK07261 2 KIAIIG-YSGSGKSTLARFLGQ----HYNCPVLHLDQ 33 (171)
T ss_pred EEEEEC-CCCCCHHHHHHHHHH----HHCCCEEEECC
T ss_conf 899988-999868999999999----87979797022
No 411
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=92.31 E-value=0.54 Score=25.28 Aligned_cols=216 Identities=18% Similarity=0.191 Sum_probs=112.2
Q ss_pred HHHHHHCCCCCCEEEEECCCCC-CCHHHHHHHHHHHCCCCCEEEEEECCCC----HHHHHHHHHCCCCEEEC----CCCC
Q ss_conf 9999861899849999805987-6778899988853289980899816871----89999999765626431----8999
Q gi|254780725|r 68 AVSCFSDSSTPDLIIVQTKVDS-REVLSALEPLAEVCDSGTKVIVIGDTND----VSLYRALISNHVSEYLI----EPLS 138 (427)
Q Consensus 68 A~~~~~~~~~P~~iivd~~~~~-~~~~~~l~~la~~~~p~~~Vivig~~~d----~~l~r~l~r~Gv~dyl~----~P~~ 138 (427)
+..+...+ --=+.++|..... ..-..-++-|.. -+.+|+++-.--| -...-+.-+.|..+.+. .-..
T Consensus 72 ~~~ai~~a-DlIlfVvD~~~git~~D~~i~~~Lrk---~~k~vilviNK~D~~~~~~~~~ef~~LG~~~~i~iSA~h~~G 147 (429)
T TIGR03594 72 AEIAIEEA-DVILFVVDGREGLTPEDEEIAKWLRK---SGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRG 147 (429)
T ss_pred HHHHHHHC-CEEEEEEECCCCCCHHHHHHHHHHHH---CCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 99999867-99999985776898679999999987---199789999834675314569999983689868874204679
Q ss_pred HHHHHHHHHHCCCCCCCC--CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCC
Q ss_conf 899999763102332223--456753799974698877568999999999962699499997879898603343899878
Q gi|254780725|r 139 VADIINSISAIFTPQEEG--KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPIN 216 (427)
Q Consensus 139 ~~~l~~ai~~~~~~~~~~--~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~ 216 (427)
.++|.+.+...+...... .....-.||++| |--|||||+-=.| + |.+-++++- ..|++-
T Consensus 148 i~~L~~~i~~~l~~~~~~~~~~~~~iriaivG-rPNvGKSTl~N~l---l----~~~r~ivs~--~~GtTr--------- 208 (429)
T TIGR03594 148 IGDLLDAILELLPEEEEEEEEEDGPIKIAIIG-RPNVGKSTLVNAL---L----GEERVIVSD--IAGTTR--------- 208 (429)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEC-CCCCCHHHHHHHH---H----HHHHHHCCC--CCCCCC---------
T ss_conf 99999999965886655543455652699974-8876546777776---5----433321479--998631---------
Q ss_pred CHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC----------
Q ss_conf 9888631845612433765320248980687248761203207999999989998512888997388888----------
Q gi|254780725|r 217 SISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW---------- 286 (427)
Q Consensus 217 ~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~---------- 286 (427)
|.+...- . .....|.++|++.--
T Consensus 209 ---D~i~~~~-------------------------------~-------------~~~~~~~~iDTaGirkk~k~~~~~e 241 (429)
T TIGR03594 209 ---DSIDIPF-------------------------------E-------------RNGKKYLLIDTAGIRRKGKVTEGIE 241 (429)
T ss_pred ---CCEEEEE-------------------------------E-------------ECCEEEEEEECCCCCCCCCCCHHHH
T ss_conf ---0268799-------------------------------9-------------9990899998988763664230477
Q ss_pred ---CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCC
Q ss_conf ---98999998620125435787768899999999999981987675389995658987520059999998489
Q gi|254780725|r 287 ---NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGI 357 (427)
Q Consensus 287 ---~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~ 357 (427)
...+..++..||.++++.+.+-.--+.=.+++..+.+.+ +++.+++|+++.-+.. ...+++.+.+..
T Consensus 242 ~~s~~~t~~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~---k~~ii~~NK~Dli~~~-~~~~~~~~~i~~ 311 (429)
T TIGR03594 242 KYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLALEAG---KALIIVVNKWDLVKDE-KTREEFKKELRR 311 (429)
T ss_pred HHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEEHHHCCCCH-HHHHHHHHHHHH
T ss_conf 999999999987447799999766588488899999898739---9769999722303799-999999999998
No 412
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=92.28 E-value=0.75 Score=24.42 Aligned_cols=83 Identities=14% Similarity=0.234 Sum_probs=56.9
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--898999998620125435787-768899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++.. ........+..+|-+++|.+. +..++..++..+..+ ........++.+|.|+.+.+.. ....
T Consensus 42 ~~~l~iwDt~G~~~~~~~~~~y~~~a~~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~--~~~~ 119 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGA--LSVS 119 (158)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC--CCHH
T ss_conf 89999998899722144899872768776899837988899999999999986605576538987605476657--8999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
++.+.++..
T Consensus 120 ei~~~l~~~ 128 (158)
T cd00878 120 ELIEKLGLE 128 (158)
T ss_pred HHHHHHHHH
T ss_conf 999998587
No 413
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.26 E-value=0.21 Score=27.86 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC--CCC----
Q ss_conf 99999763102332223456753799974698877568999999999962699499997879898603343--899----
Q gi|254780725|r 140 ADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF--DKD---- 213 (427)
Q Consensus 140 ~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l--~~~---- 213 (427)
+.++++|.+... .+|.+.-+-|.|.| ||||||+|==||-+|--. + .|.+|- |...... +..
T Consensus 20 ~~iv~tL~NAi~-----~~ri~HAYLF~GpR-GtGKTS~ARIfAKaLNC~-~-----~~~~PC-n~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 20 EHIVKTLKNAIK-----NGRIAHAYLFSGPR-GTGKTSIARIFAKALNCQ-G-----PDGEPC-NECESCKEINSGSSLD 86 (363)
T ss_pred HHHHHHHHHHHH-----HCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCC-C-----CCCCCC-CCCCHHHHHHCCCCCC
T ss_conf 799999999997-----18966234502859-976355899999986588-7-----877877-7750227765289866
Q ss_pred -------CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCC-----CCCHHCCCHHHHHHHHHHHHHCCCEEEE-
Q ss_conf -------878988863184561243376532024898068724876-----1203207999999989998512888997-
Q gi|254780725|r 214 -------PINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAM-----LSRTYDFDEKMIVPVLDILEQIFPLVIL- 280 (427)
Q Consensus 214 -------~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~-----~~~~~~~~~~~l~~ll~~l~~~yd~VIi- 280 (427)
+..|+.|+= .++ +.+.+.|.... .|+.-.++.++|-.||.+|.+-=.+||+
T Consensus 87 viEiDAASN~gVD~IR--------~l~--------e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FI 150 (363)
T TIGR02397 87 VIEIDAASNNGVDDIR--------ELR--------ENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 150 (363)
T ss_pred EEEECCCCCCCHHHHH--------HHH--------HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 6886486568788999--------998--------730368755443358873230286568999876522798762888
Q ss_pred --------------------CCCCCCCHHHHHHHH---------H-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf --------------------388888989999986---------2-0125435787768899999999999981987
Q gi|254780725|r 281 --------------------DVPHVWNSWTQEVLT---------L-SDKVVITTSLDLAGLRNSKNLIDVLKKLRPA 327 (427)
Q Consensus 281 --------------------D~p~~~~~~~~~~L~---------~-AD~vviV~~p~~~slr~a~~ll~~l~~~~~~ 327 (427)
|...-.......-|. . -..+-+++...-.|+|+|-.+++.+-....+
T Consensus 151 lATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~ 227 (363)
T TIGR02397 151 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNG 227 (363)
T ss_pred EECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73487112055402100031267899899999999999870883177899999996289610688999999982688
No 414
>PRK12338 hypothetical protein; Provisional
Probab=92.22 E-value=0.15 Score=28.65 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=23.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 7999746988775689999999999626994999
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLL 196 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlL 196 (427)
.|.++|+-.||||||+|.-||..| |-++++
T Consensus 5 liILiGGtSGvGKSTlAseLAsRL----gI~tvI 34 (320)
T PRK12338 5 YVILIGSASGIGKSTIASEVARRL----NIKHLI 34 (320)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHC----CCCEEE
T ss_conf 799970688876888999999851----987110
No 415
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.22 E-value=0.83 Score=24.12 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=78.2
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 1288899738888--898999998620125435787-768899999-999999981987675389995658987520059
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSK-NLIDVLKKLRPADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~-~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
..+.+-|+|++.. +..........+|.+++|-.- +..|+.+.. ++++.+++..+ ..++.+|-|+++.....+
T Consensus 46 ~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~-~~piiLVgnK~DL~~~~~--- 121 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARN--- 121 (189)
T ss_pred EEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECHHCCCCHH---
T ss_conf 9999999847785000035567643786459999789878999999999999997497-997899998800465323---
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999998489537990687999999884-796189888999--899999999999852212232
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSAN-SGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSK 408 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~-~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~ 408 (427)
....+.......+.++ +....|.. ++.+..|.+.+. -+-+.|.++|+.++....+.+
T Consensus 122 --~~~~~~~~~~~~is~~-eg~~~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~l~~~~~~~ 181 (189)
T cd04134 122 --ERDDLQRYGKHTISYE-EGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHP 181 (189)
T ss_pred --HHHHHHHHCCCCCCHH-HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf --5677766304665899-99999998299789996806794989999999999973589899
No 416
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=92.19 E-value=0.84 Score=24.10 Aligned_cols=52 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred HHHHHHCCCCCCCCCCCHHH-HHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 99986201254357877688-99999999999981987675389995658987
Q gi|254780725|r 291 QEVLTLSDKVVITTSLDLAG-LRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 291 ~~~L~~AD~vviV~~p~~~s-lr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
...+..||.+++|++.+-.. ........+.++..+....++.+|+|+++...
T Consensus 115 le~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NKiDl~~ 167 (204)
T cd01878 115 LEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLD 167 (204)
T ss_pred HHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 99997398999999799853667799999999980655576078886704799
No 417
>KOG2968 consensus
Probab=92.19 E-value=0.84 Score=24.10 Aligned_cols=57 Identities=18% Similarity=0.242 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHH-HHHHHHH
Q ss_conf 99998999851288899738888898999998620125435787768899-9999999
Q gi|254780725|r 263 MIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLR-NSKNLID 319 (427)
Q Consensus 263 ~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr-~a~~ll~ 319 (427)
.+..-+......|+.|+.-+-...+.|++..+..||.+++|...+...-. ...+++.
T Consensus 696 rl~~wL~~qEd~y~ivlY~~D~~~s~WtrrClrqaD~ILiva~g~~~pe~g~~er~l~ 753 (1158)
T KOG2968 696 RLMSWLAQQEDRYRIVLYQCDFVLSNWTRRCLRQADCILIVALGDQSPEIGELERELL 753 (1158)
T ss_pred HHHHHHHHHHHHHEEEEEEECCCCCHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 3777887753433289999447557899999865078999963888830769999998
No 418
>COG1160 Predicted GTPases [General function prediction only]
Probab=92.18 E-value=0.49 Score=25.55 Aligned_cols=18 Identities=39% Similarity=0.543 Sum_probs=9.3
Q ss_pred CEEEEEECCCC--HHHHHHH
Q ss_conf 80899816871--8999999
Q gi|254780725|r 107 TKVIVIGDTND--VSLYRAL 124 (427)
Q Consensus 107 ~~Vivig~~~d--~~l~r~l 124 (427)
.+|-+||.-|. ..|...+
T Consensus 179 ikiaiiGrPNvGKSsLiN~i 198 (444)
T COG1160 179 IKIAIIGRPNVGKSSLINAI 198 (444)
T ss_pred EEEEEEECCCCCCHHHHHHH
T ss_conf 08999927878705888775
No 419
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=92.18 E-value=0.23 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 75379997469887756899999999996269949999787
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
..+-+-++| --|+|||++|..+|+.+.. .+..++.+++.
T Consensus 18 ~~~~ill~G-ppGtGKT~la~~ia~~~~~-~~~~~~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYG-PPGTGKTTLARAIANELFR-PGAPFLYLNAS 56 (151)
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHHHHCC-CCCCEEEEEHH
T ss_conf 998089989-9998865999999997121-37982785477
No 420
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.18 E-value=0.39 Score=26.16 Aligned_cols=42 Identities=21% Similarity=0.248 Sum_probs=27.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 56753799974698877568999999999962699499997879
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
-..|.+++++| ..|+||||+.-.++..+.- ...++.+=+-|.
T Consensus 47 i~~GE~~~ivG-~SGsGKSTLLr~i~GL~~p-~~G~I~~~G~~i 88 (269)
T cd03294 47 VREGEIFVIMG-LSGSGKSTLLRCINRLIEP-TSGKVLIDGQDI 88 (269)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCEEEEECCEEC
T ss_conf 88999999998-9984899999999759999-975999999999
No 421
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=92.17 E-value=0.84 Score=24.09 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=72.3
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHH-CCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--898999998620125435787-76889999999999998-19876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKK-LRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~-~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.|.+-|+|++.. +......-...++-+++|.+. +..|+.+...+.+.+.. .....-++.+|-|+.+......++.+
T Consensus 48 ~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~ 127 (180)
T cd04137 48 DYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTE 127 (180)
T ss_pred EEEEEEEECCCCCCCCHHHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHH
T ss_conf 99999998998701006679998635578999743887889999999999999758888867977653462440788999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 99998489537990687999999884796189888999--89999999999985221223211
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSKPQ 410 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~~k 410 (427)
+. + .-|...|-+..|.+.+. -+.+.|..|++.|.....+.+|+
T Consensus 128 e~----------------~--~~a~~~~~~f~EtSAk~g~nV~e~F~~l~~~i~k~~~~~~~~ 172 (180)
T cd04137 128 EG----------------K--ELAESWGAAFLESSARENENVEEAFELLIEEIEKVENPLDPG 172 (180)
T ss_pred HH----------------H--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99----------------9--999983998999776889198999999999998863899999
No 422
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=92.06 E-value=0.87 Score=24.01 Aligned_cols=41 Identities=22% Similarity=0.334 Sum_probs=28.7
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 6753799974698877568999999999962699499997879
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
+.|..|+++| +-|+||||+.--+.-.+--. ...+.+=+-|+
T Consensus 32 ~~Ge~v~ivG-~sGsGKSTLl~ll~g~~~p~-~G~I~idg~di 72 (207)
T cd03369 32 KAGEKIGIVG-RTGAGKSTLILALFRFLEAE-EGKIEIDGIDI 72 (207)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHHCCCC-CCEEEECCEEC
T ss_conf 6999999999-99987999999999872888-87899999995
No 423
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=92.02 E-value=0.88 Score=23.98 Aligned_cols=89 Identities=15% Similarity=0.244 Sum_probs=61.3
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCC--HHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCC-CCCCCCCCEEEEEEE--
Q ss_conf 899988853289980899816871--899999997656264318999899999763102332-223456753799974--
Q gi|254780725|r 94 SALEPLAEVCDSGTKVIVIGDTND--VSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQ-EEGKGSSGCSISFIG-- 168 (427)
Q Consensus 94 ~~l~~la~~~~p~~~Vivig~~~d--~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~-~~~~~~~grvIav~g-- 168 (427)
..-.++.+.|...+|.+|++..-+ ..++-.+.+.++- .|..+....++...+...+... .+...-.|-.+.++|
T Consensus 69 ~r~~~i~~~~~~~~P~iI~sk~~~~p~~l~~~a~~~~~p-il~s~~~ts~l~~~l~~yL~~~lA~~~~vHGvl~~I~GvG 147 (308)
T COG1493 69 ERKKRIGKLFSLDTPALIVSKGLPIPEELLDAAKKYNIP-ILTSKLSTSELSFTLTNYLSRPLAERVNVHGVLLDIFGVG 147 (308)
T ss_pred HHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHCCCC-EEEECCHHHHHHHHHHHHHHHHCCCCEEEEEEEEEEEEEE
T ss_conf 589999997476997799978999978999998870996-6985331899999999986131052025546899994258
Q ss_pred ----CCCCCCHHHHHHHHH
Q ss_conf ----698877568999999
Q gi|254780725|r 169 ----SRGGVGSSTIAHNCA 183 (427)
Q Consensus 169 ----~KGGvGkTTiA~nLA 183 (427)
+..|+|||.+|..|=
T Consensus 148 VLItG~SG~GKSElALeLi 166 (308)
T COG1493 148 VLITGPSGAGKSELALELI 166 (308)
T ss_pred EEEECCCCCCHHHHHHHHH
T ss_conf 9998789887768999999
No 424
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=92.01 E-value=0.27 Score=27.17 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=6.7
Q ss_pred HCCCCCEEEEEECC
Q ss_conf 32899808998168
Q gi|254780725|r 102 VCDSGTKVIVIGDT 115 (427)
Q Consensus 102 ~~~p~~~Vivig~~ 115 (427)
.+.++.-++||...
T Consensus 106 as~aD~ailvVdA~ 119 (443)
T PTZ00141 106 TSQADVALLVVPAE 119 (443)
T ss_pred HCCCCEEEEEEECC
T ss_conf 41077589999867
No 425
>PRK05855 short chain dehydrogenase; Validated
Probab=91.98 E-value=0.22 Score=27.62 Aligned_cols=155 Identities=17% Similarity=0.167 Sum_probs=75.2
Q ss_pred CCCEEEEEECCCC----HHHHHHHHHCCCCEEEC--------CCCC-HHHHHHHHHHCCCC----C-----------CCC
Q ss_conf 9980899816871----89999999765626431--------8999-89999976310233----2-----------223
Q gi|254780725|r 105 SGTKVIVIGDTND----VSLYRALISNHVSEYLI--------EPLS-VADIINSISAIFTP----Q-----------EEG 156 (427)
Q Consensus 105 p~~~Vivig~~~d----~~l~r~l~r~Gv~dyl~--------~P~~-~~~l~~ai~~~~~~----~-----------~~~ 156 (427)
..+||-+|-...| ..+|..+-+ =+.+|-. .|.+ ++.+.+.+...... + .+.
T Consensus 232 ~~vPVq~iv~~~D~~v~p~l~~~~~~-w~~~l~rr~i~a~HW~p~s~P~~iA~~~~efv~~~~~~~~~~~~~~~~~~~~~ 310 (582)
T PRK05855 232 THVPVQLIVPTGDPYVRPALYDDLAR-WVPRLWRREIKAGHWLPMSHPQVLAAAVAELIDAVEGGPPPRALLRARVGRPR 310 (582)
T ss_pred CCCCEEEEEECCCCCCCHHHHCCHHH-CCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCC
T ss_conf 88877997517887769777441444-17860898603785376679899999999999863578898667335458998
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCC-HHHC---CCCCCCCHHHHHCCCCCHHHHH
Q ss_conf 45675379997469887756899999999996269949999787989860-3343---8998789888631845612433
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTA-NINF---DKDPINSISDAIYPVGRIDKAF 232 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~-~~~l---~~~~~~~l~d~l~~~~rlD~~~ 232 (427)
....||++.|+|+.+|+|+. +|..||+ .|.+|++.|.|...... ...+ |.+...-..|+ .+.+.+ ..+
T Consensus 311 ~rFsGKvAvVTGA~sGIGrA-----~A~~fA~-~GA~Vvl~Dr~~~~l~eta~ei~~~G~~a~~~~~DV-td~~av-~al 382 (582)
T PRK05855 311 GRFGGKLVVVTGAGSGIGRA-----TALAFAR-EGAEVVASDIDEAAAERTAALIRAAGAVAHAYRVDV-SDADAM-EAL 382 (582)
T ss_pred CCCCCCEEEEECCCCHHHHH-----HHHHHHH-CCCEEEEECCCHHHHHHHHHHHHHCCCEEEEEECCC-CCHHHH-HHH
T ss_conf 87499589995875789999-----9999997-799999960799999999999995198489997558-999999-999
Q ss_pred HHHHHHCCCCCEEEEECCCCC---CCHHCCCHHHHHHHHH
Q ss_conf 765320248980687248761---2032079999999899
Q gi|254780725|r 233 VSRLPVFYAENLSILTAPAML---SRTYDFDEKMIVPVLD 269 (427)
Q Consensus 233 l~~~l~~~~~gL~lL~a~~~~---~~~~~~~~~~l~~ll~ 269 (427)
.+..... -.++++|--.... ....+.+.+.++.+++
T Consensus 383 ~~~v~~~-~G~iDILVNNAGI~~~g~~~d~s~e~w~~v~d 421 (582)
T PRK05855 383 AEWVGAE-HGVPDIVVNNAGIGMAGGFLDTSAEEWDRVLD 421 (582)
T ss_pred HHHHHHH-CCCCCEEEECCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999997-69999999898758997803299999999998
No 426
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=91.95 E-value=0.89 Score=23.93 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=30.1
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHH
Q ss_conf 999997631023322234567537999746988775689999999999
Q gi|254780725|r 140 ADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIA 187 (427)
Q Consensus 140 ~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA 187 (427)
+.+.+.+.+... .++.+.-+-|.| ..|+|||++|-.+|..+-
T Consensus 10 ~~i~~~L~~~i~-----~~rl~HAyLF~G-p~G~GK~~~A~~~A~~ll 51 (313)
T PRK05564 10 ENIKNRIDNSII-----KGKFSHASLIVG-EDGIGKSILAKEIANKIL 51 (313)
T ss_pred HHHHHHHHHHHH-----CCCCCCEEEEEC-CCCCCHHHHHHHHHHHHH
T ss_conf 999999999998-----799875043279-998509999999999982
No 427
>pfam05729 NACHT NACHT domain. This NTPase domain is found in apoptosis proteins as well as those involved in MHC transcription activation. This family is closely related to pfam00931.
Probab=91.93 E-value=0.2 Score=27.97 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=22.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 3799974698877568999999999962
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASV 189 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~ 189 (427)
|.|.+.| ..|+||||++..+|+.+++.
T Consensus 1 r~i~i~G-~aG~GKTtll~kl~~~wa~g 27 (165)
T pfam05729 1 RTVILQG-EAGSGKTTLLQKLALLWAQG 27 (165)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHCC
T ss_conf 9899982-79898999999999999869
No 428
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.91 E-value=0.46 Score=25.69 Aligned_cols=43 Identities=26% Similarity=0.258 Sum_probs=28.3
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-+.|.+++++| ..|+||||+.--++....- ....+.+-+-|..
T Consensus 28 i~~Ge~~~ivG-~SGsGKSTllr~i~gL~~p-~sG~I~~~g~~i~ 70 (233)
T cd03258 28 VPKGEIFGIIG-RSGAGKSTLIRCINGLERP-TSGSVLVDGTDLT 70 (233)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCCEEEECCEECC
T ss_conf 99999999988-9805899999999679999-9808999999989
No 429
>PRK12377 putative replication protein; Provisional
Probab=91.86 E-value=0.33 Score=26.58 Aligned_cols=68 Identities=9% Similarity=0.087 Sum_probs=41.8
Q ss_pred HCCCCEEE------CCCCCHHHHHHHHH--HCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 76562643------18999899999763--10233222345675379997469887756899999999996269949999
Q gi|254780725|r 126 SNHVSEYL------IEPLSVADIINSIS--AIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 126 r~Gv~dyl------~~P~~~~~l~~ai~--~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
|+|++++- -+++.-+....++. +-++. .-...+.-+.|+| .-|+|||-+|+.++..+.+ .|++|+.+
T Consensus 61 rs~i~~~h~~~~f~ny~~~~~~~~~a~~~a~~~~~---~F~~~~~NlIf~G-~pGtGKTHLA~AIg~~a~~-~G~sVlF~ 135 (248)
T PRK12377 61 RSGIQPLHRKCSFANYQVQNDGQRYALSQAKSIAD---ELMTGCTNFVFSG-KPGTGKNHLAAAIGNRLLA-KGRSVIVV 135 (248)
T ss_pred CCCCCHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH---HHHCCCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 04685376438634564578789999999999999---8731886089989-9998788999999999998-79969998
Q ss_pred E
Q ss_conf 7
Q gi|254780725|r 198 D 198 (427)
Q Consensus 198 D 198 (427)
-
T Consensus 136 t 136 (248)
T PRK12377 136 T 136 (248)
T ss_pred E
T ss_conf 8
No 430
>PRK06872 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=0.92 Score=23.87 Aligned_cols=32 Identities=13% Similarity=0.202 Sum_probs=18.3
Q ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 18999999976562643189998999997631
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
|+.||-+..-.|-+|.=..|....-+-=++-|
T Consensus 319 ~~ql~Yqi~l~g~~dl~~apd~~~g~eM~lLR 350 (696)
T PRK06872 319 DVQFFYQVMVSGRKELAFAPNRRIGVEMTLLR 350 (696)
T ss_pred HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
T ss_conf 99999999984120045699646749999999
No 431
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.86 E-value=0.61 Score=24.95 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=29.3
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
-..|.+++++| ..|+||||+.-.++-.+.-. ..++.+-+-|..
T Consensus 24 i~~Ge~~~iiG-psGsGKSTLl~~i~gl~~p~-~G~I~~~g~~i~ 66 (241)
T cd03256 24 INPGEFVALIG-PSGAGKSTLLRCLNGLVEPT-SGSVLIDGTDIN 66 (241)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CEEEEECCEECC
T ss_conf 99998999999-99833999999997499998-559999999989
No 432
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=91.84 E-value=0.44 Score=25.80 Aligned_cols=52 Identities=8% Similarity=0.077 Sum_probs=37.8
Q ss_pred CCCCCEEEEEEE---CCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCC
Q ss_conf 456753799974---69887756899999999996269949999787989860334389
Q gi|254780725|r 157 KGSSGCSISFIG---SRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDK 212 (427)
Q Consensus 157 ~~~~grvIav~g---~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~ 212 (427)
..+.||.|.|.+ ..-|-||||++..|+.+|.+ .|+++++. +...+++..||+
T Consensus 50 ~~~~gklilVTaitPTP~GEGKTTttIGL~~aL~~-lgk~~~~~---lRePSlGP~FGi 104 (577)
T PRK13506 50 DQPKGKLVIVTAVTPTPLGEGKTVTTIGLTQGLNA-LGQKVCAC---IRQPSMGPVFGV 104 (577)
T ss_pred CCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHH-HCCCEEEE---EECCCCCCCCCC
T ss_conf 38996499998568988989841109879999987-19845899---726887874066
No 433
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=91.83 E-value=0.19 Score=28.04 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=22.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHH
Q ss_conf 53799974698877568999999999
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSI 186 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~L 186 (427)
-.+|..+|+-.||||||+|..||.-|
T Consensus 261 ~PiiILIGGaSGvGKSTlAseLA~RL 286 (492)
T PRK12337 261 RPLHVLLGGVSGTGKSVLAAELAYRL 286 (492)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 87699960788866888999999960
No 434
>PRK08116 hypothetical protein; Validated
Probab=91.83 E-value=0.33 Score=26.59 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=30.6
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7537999746988775689999999999626994999978
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
.++=+-++| .-|+|||.+|+.+|..|.+ .|.+|+.+..
T Consensus 107 ~~~GLll~G-~~GtGKThLa~aIa~~l~~-~g~~V~~~~~ 144 (262)
T PRK08116 107 ESVGLLLWG-SPGNGKTYLAAAIANELIE-KGVPVVFVNV 144 (262)
T ss_pred CCCEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEEH
T ss_conf 686189989-8999899999999999998-7993999889
No 435
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.81 E-value=0.93 Score=23.84 Aligned_cols=86 Identities=12% Similarity=0.200 Sum_probs=57.9
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
++.-+...|.+....--.-.+=++|+.....+.++.++.+++.+ |+. .|=.|..-+....++++.+|++ |++.|...
T Consensus 21 lr~~~~~~a~~i~~al~~gGi~~iEiTl~tp~a~~~I~~l~~~~-p~~-~vGaGTV~~~e~~~~a~~aGA~-FiVSP~~~ 97 (212)
T PRK05718 21 IVINKLEDAVPLAKALVAGGLPVLEVTLRTPAALEAIRAIRKEV-PEA-LIGAGTVLNPEQLAQAIEAGAQ-FIVSPGLT 97 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CCC-EEEEEEECCHHHHHHHHHCCCC-EEECCCCC
T ss_conf 97489999999999999879978999578961999999999758-981-7965331348899999984998-99848998
Q ss_pred HHHHHHHHH
Q ss_conf 999997631
Q gi|254780725|r 140 ADIINSISA 148 (427)
Q Consensus 140 ~~l~~ai~~ 148 (427)
.++++...+
T Consensus 98 ~~v~~~a~~ 106 (212)
T PRK05718 98 PPLLKACQD 106 (212)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 436
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=91.80 E-value=0.93 Score=23.83 Aligned_cols=110 Identities=18% Similarity=0.215 Sum_probs=67.6
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHH
Q ss_conf 12888997388888--9899999862012543578-776889999999999998198-7675389995658987520059
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
..+.+-++|++... .......+..||.+++|.+ -+..|+.+...+++.+.+... ...++.+|-|+.+......++.
T Consensus 45 ~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~ 124 (160)
T cd00876 45 ETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSK 124 (160)
T ss_pred EEEEEEEEECCCCHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCH
T ss_conf 99999999799962355788999764368999732898789999999999999972878862999997456223078999
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 999998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
++..+ -|...|.+..|.+.++ -+.+.|..|++.|
T Consensus 125 ~e~~~------------------~a~~~~~~y~e~Sak~g~nV~e~F~~i~~~i 160 (160)
T cd00876 125 EEGKA------------------LAKEWGCPFIETSAKDNINIDEVFKLLVREI 160 (160)
T ss_pred HHHHH------------------HHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 99999------------------9998499799984798949899999999729
No 437
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=91.79 E-value=0.93 Score=23.82 Aligned_cols=36 Identities=28% Similarity=0.350 Sum_probs=27.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEE
Q ss_conf 67537999746988775689999999999626994999
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLL 196 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlL 196 (427)
..|..++++| +-|+||||+.--+.-.+.-.. .++.+
T Consensus 26 ~~Ge~~aivG-~sGsGKSTLl~~l~G~~~p~~-G~i~i 61 (178)
T cd03247 26 KQGEKIALLG-RSGSGKSTLLQLLTGDLKPQQ-GEITL 61 (178)
T ss_pred CCCCEEEEEC-CCCCHHHHHHHHHHHCCCCCC-CEEEE
T ss_conf 6999999999-998759999999986176678-86999
No 438
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=91.63 E-value=0.65 Score=24.80 Aligned_cols=64 Identities=13% Similarity=0.182 Sum_probs=28.7
Q ss_pred CCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCH--HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 88899738888--89899999862012543578776--88999999999999819876753899956589
Q gi|254780725|r 275 FPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDL--AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 275 yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~--~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
+.|.++|+|.. +-..+......+|..++|+..+- .-...+++-+..++.++. +.+.+++|+++.
T Consensus 85 ~~~~iiD~PGH~~fi~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi--~~iiV~vnKmD~ 152 (426)
T PRK12317 85 YYFTIIDCPGHRDFVKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGI--NQLIVAINKMDA 152 (426)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCC
T ss_conf 16999878963667877874534677279999636566764778999999998099--839999953335
No 439
>PRK10490 sensor protein KdpD; Provisional
Probab=91.62 E-value=0.97 Score=23.71 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=11.4
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEEC
Q ss_conf 30699899999986189984999980
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQT 85 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~ 85 (427)
...-++++++.. -|++++||=
T Consensus 90 ~~e~dlda~l~r-----~P~~~lvDe 110 (895)
T PRK10490 90 ISEFDLDAALAR-----RPALILMDE 110 (895)
T ss_pred CCCCCHHHHHHC-----CCCEEEEEC
T ss_conf 341689899853-----998899733
No 440
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=91.60 E-value=0.98 Score=23.69 Aligned_cols=96 Identities=16% Similarity=0.140 Sum_probs=57.3
Q ss_pred CHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCC-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 18999999976562643189998999997631023322-23456753799974698877568999999999962699499
Q gi|254780725|r 117 DVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQE-EGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETL 195 (427)
Q Consensus 117 d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~-~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~Vl 195 (427)
+..-..++++.|.+ .+++.+.-....+-.+ .-.-..|.+++++| ..|+||||+.--++..+-- ...++.
T Consensus 17 ~~~~a~~~~~~g~~--------k~ei~~~tg~~vAv~dVsl~I~~GEi~~ivG-~SGsGKSTLlr~i~gL~~P-t~G~I~ 86 (400)
T PRK10070 17 HPQRAFKYIEQGLS--------KEQILEKTGLSLGVKDASLAIEEGEIFVIMG-LSGSGKSTMVRLLNRLIEP-TRGQVL 86 (400)
T ss_pred CHHHHHHHHHCCCC--------HHHHHHHHCCEEEEECCEEEECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCCEEE
T ss_conf 98999999876999--------8999986499998974076887999999999-9984699999999759998-981899
Q ss_pred EEECCCCCC-----------CCHH---HCCCCCCCCHHHHH
Q ss_conf 997879898-----------6033---43899878988863
Q gi|254780725|r 196 LADLDLPYG-----------TANI---NFDKDPINSISDAI 222 (427)
Q Consensus 196 LvDlDl~~g-----------~~~~---~l~~~~~~~l~d~l 222 (427)
+-+-|...- ..++ .+++-|..++.+-+
T Consensus 87 i~G~di~~~~~~~l~~~rrr~igmVFQ~~aL~P~~TV~eNi 127 (400)
T PRK10070 87 IDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNT 127 (400)
T ss_pred ECCEECCCCCHHHHHHHHCCCEEEEECCCCCCCCCCHHHHH
T ss_conf 99999998997898765146559995797414388888878
No 441
>PRK08782 consensus
Probab=91.58 E-value=0.98 Score=23.68 Aligned_cols=87 Identities=15% Similarity=0.158 Sum_probs=63.0
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
++.-+.+.|.+....--.-.+=++|+.+.....++.++.|++.. |+ -.|=.|...|....++++.+|++ |++.|...
T Consensus 23 ir~~~~~~a~~~~eal~~gGi~~iEiTlrt~~a~~~i~~l~~~~-p~-~~vGaGTV~~~e~~~~a~~aGA~-FiVSP~~~ 99 (219)
T PRK08782 23 VTVDTLDQARRVADALLEGGLPAIELTLRTPVAIEALAMLKREL-PN-IVIGAGTVLSERQLRQSVDAGAD-FLVTPGTP 99 (219)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHC-CC-CEEEEEEECCHHHHHHHHHCCCC-EEECCCCC
T ss_conf 97599999999999999879987999679933999999999868-99-47999970589999999984998-99878997
Q ss_pred HHHHHHHHHC
Q ss_conf 9999976310
Q gi|254780725|r 140 ADIINSISAI 149 (427)
Q Consensus 140 ~~l~~ai~~~ 149 (427)
.++++...+.
T Consensus 100 ~~v~~~a~~~ 109 (219)
T PRK08782 100 APLARLLADA 109 (219)
T ss_pred HHHHHHHHHC
T ss_conf 9999999981
No 442
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=91.56 E-value=0.99 Score=23.67 Aligned_cols=72 Identities=21% Similarity=0.043 Sum_probs=40.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCC-EEEEECCCC-CCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 7999746988775689999999999626994-999978798-98603343899878988863184561243376532024
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAME-TLLADLDLP-YGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~-VlLvDlDl~-~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
||++.| .-|+||||+|-.|...+++....+ |-+|-.|-- .++. .|+ ++|+.+-=..|+..|-..+-+.+...
T Consensus 84 IIgiaG-svavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~--~L~---~~glm~rKGfPeSyD~~~ll~fl~~v 157 (283)
T COG1072 84 IIGIAG-SVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNA--VLD---ERGLMARKGFPESYDVAALLRFLSDV 157 (283)
T ss_pred EEEECC-CCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH--HHH---HCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 999605-766557789999999996388987337871454546767--752---21220018998535689999999999
No 443
>pfam02572 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin adenosyltransferase, EC:2.5.1.17, involved in cobalamin (vitamin B12) biosynthesis. These enzymes catalyse the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=91.55 E-value=0.84 Score=24.09 Aligned_cols=37 Identities=27% Similarity=0.389 Sum_probs=29.1
Q ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 7537999746988775689999999999626994999978
Q gi|254780725|r 160 SGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 160 ~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
.|.+...+| -|=||||-|..+|.-.+. .|.+|+++-+
T Consensus 3 ~G~i~iytG--~GKGKTTAAlGlalRA~G-~G~rV~ivQF 39 (172)
T pfam02572 3 KGLLIVYTG--NGKGKSTAAFGMALRALG-HGMRVGVVQF 39 (172)
T ss_pred CCEEEEEEC--CCCCHHHHHHHHHHHHHC-CCCEEEEEEE
T ss_conf 637999957--999718899999999825-9988999999
No 444
>TIGR01846 type_I_sec_HlyB type I secretion system ATPase; InterPro: IPR010132 Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This entry contains one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N terminus, but rather carry signals located toward the extreme C terminus to direct type I secretion.; GO: 0005524 ATP binding, 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane.
Probab=91.51 E-value=0.24 Score=27.48 Aligned_cols=107 Identities=16% Similarity=0.159 Sum_probs=56.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
+.|.+|.++| ..|+||||++==+=...-=++| +||+=..|+.. .|++.|+|-+.
T Consensus 489 ~~Ge~IGIvG-pSGSGKSTLTKL~QRLYtP~~G-qVLVDG~DLA~------------------------~DP~wLRRQ~g 542 (703)
T TIGR01846 489 KPGEVIGIVG-PSGSGKSTLTKLLQRLYTPEHG-QVLVDGVDLAI------------------------ADPAWLRRQVG 542 (703)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHCCCCCC-EEEECCCCCCC------------------------CCCCHHHHCCE
T ss_conf 7865799872-7898678999998861488887-47770300010------------------------18520102230
Q ss_pred CC-----------CCCEEEEECCCCCCCHHCC-CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHH
Q ss_conf 24-----------8980687248761203207-99999998999851288899738888898999
Q gi|254780725|r 239 FY-----------AENLSILTAPAMLSRTYDF-DEKMIVPVLDILEQIFPLVILDVPHVWNSWTQ 291 (427)
Q Consensus 239 ~~-----------~~gL~lL~a~~~~~~~~~~-~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~ 291 (427)
.+ .||+++--...+.+..-.. +=..-...+..+++.|+..|.-=+...+..-+
T Consensus 543 VVLQEn~LFsrSirdNI~l~~P~~~~E~Vi~AA~LAGA~dFI~~Lp~GY~T~vgE~G~~LSGGQR 607 (703)
T TIGR01846 543 VVLQENVLFSRSIRDNIALCNPGASVEHVIAAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR 607 (703)
T ss_pred EEEECCHHHCCCHHHHHHHCCCCCCHHHHHHHHHHCCHHHHHHHCCCCCCCCCEEECCCCCCHHH
T ss_conf 23400021012278898517777698999999862185899973637677400124156673378
No 445
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=91.41 E-value=0.29 Score=26.94 Aligned_cols=37 Identities=27% Similarity=0.251 Sum_probs=26.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 6753799974698877568999999999962699499997
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
+.|..|+++| +.|+||||++--++-.+.-.. .. +.+|
T Consensus 489 ~~Ge~vaIvG-~sGsGKSTL~kll~Gl~~p~~-G~-i~id 525 (694)
T TIGR03375 489 RPGEKVAIIG-RIGSGKSTLLKLLLGLYQPTE-GS-VLLD 525 (694)
T ss_pred CCCCEEEEEE-CCCCCHHHHHHHHCCCCCCCC-CE-EEEC
T ss_conf 7997899980-589878899998556758998-87-9989
No 446
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.40 E-value=0.62 Score=24.91 Aligned_cols=39 Identities=23% Similarity=0.232 Sum_probs=26.4
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE
Q ss_conf 56753799974698877568999999999962699499997
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD 198 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD 198 (427)
-..|.+++++| ..|+||||+.-.++-.+.- ...++.+-.
T Consensus 23 i~~Ge~~~iiG-~SGsGKSTll~~i~gL~~p-~~G~I~~~g 61 (235)
T cd03261 23 VRRGEILAIIG-PSGSGKSTLLRLIVGLLRP-DSGEVLIDG 61 (235)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCC-CCCEEEECC
T ss_conf 87998999999-9997299999999759998-985899999
No 447
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=91.38 E-value=0.15 Score=28.77 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=56.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
|-++|+-.|.||||+|-.||-.|+ .+- ...|.. .++... .|
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls----l~~------iSaG~i------------RelA~~-----------------~G 42 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS----LKL------ISAGDI------------RELAEK-----------------MG 42 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC----CCE------ECCCHH------------HHHHHH-----------------CC
T ss_conf 788735896864789999998639----831------202007------------889864-----------------29
Q ss_pred EEEEECCCCCCCHHCCCHHHHHH-HHHHHHHCCCEEEECCCCCCCHHHHH-HHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 06872487612032079999999-89998512888997388888989999-9862012543-5787768899999
Q gi|254780725|r 244 LSILTAPAMLSRTYDFDEKMIVP-VLDILEQIFPLVILDVPHVWNSWTQE-VLTLSDKVVI-TTSLDLAGLRNSK 315 (427)
Q Consensus 244 L~lL~a~~~~~~~~~~~~~~l~~-ll~~l~~~yd~VIiD~p~~~~~~~~~-~L~~AD~vvi-V~~p~~~slr~a~ 315 (427)
|+|.-... .++..++... +++ +.+.++..-|+||= .....|... --..||.-+. -+.+++.+-|=++
T Consensus 43 ldl~E~~~-aee~~eIDk~-iD~~~~E~A~~~~nvvlE---srlagW~~~~nG~yaD~~iyL~A~levRA~RIA~ 112 (173)
T TIGR02173 43 LDLAESKY-AEENPEIDKK-IDRRIREIAEKEKNVVLE---SRLAGWILKKNGEYADVKIYLKAPLEVRARRIAK 112 (173)
T ss_pred CCHHHHHH-HCCCCCCCHH-HHHHHHHHHCCCCCEEEE---EHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 88777344-3058631167-537885543048966885---2054331157889675678860883332433211
No 448
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=91.37 E-value=0.056 Score=31.35 Aligned_cols=126 Identities=17% Similarity=0.268 Sum_probs=78.8
Q ss_pred CCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC-CCHHHHHHH
Q ss_conf 88899738888--898999998620125435787768899999999999981987675389995658987-520059999
Q gi|254780725|r 275 FPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDF 351 (427)
Q Consensus 275 yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~-~~~i~~~~~ 351 (427)
+-.=|||||.. ++.....+|.+.|-|+++++..---+-+|+=.++.- +..+ -+|-+|+|+.+.|. |++...+++
T Consensus 70 ~~INIvDTPGHADFGGEVERvL~MVDGvlLlVDA~EGPMPQTrFVL~KA--L~~g-LkPIVViNKiDrp~ARP~eV~d~v 146 (609)
T TIGR01394 70 TKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKA--LELG-LKPIVVINKIDRPSARPDEVVDEV 146 (609)
T ss_pred EEEEEEECCCCCCCCCEEEEECEEEEEEEEEEECCCCCCCCCHHHHHHH--HHCC-CCEEEEECCCCCCCCCHHHHHHHH
T ss_conf 8997781689887886588733024058999857888988534789999--9568-936999713478878837887578
Q ss_pred HH---HHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99---84895379906879999998847961898889--998999999999998522122
Q gi|254780725|r 352 CA---PLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVLMGRVTV 406 (427)
Q Consensus 352 ~~---~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i~gr~~~ 406 (427)
-+ .||..=. .+ |...+-.|..+|..=.+... ...-++.+.-|=+.|....++
T Consensus 147 FDLF~~LgA~de-QL--DFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPa 203 (609)
T TIGR01394 147 FDLFIELGADDE-QL--DFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPA 203 (609)
T ss_pred HHHHHHCCCCCC-CC--CHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 788885388800-10--1256766523672014466577887220178999898640688
No 449
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=91.36 E-value=0.2 Score=27.92 Aligned_cols=115 Identities=25% Similarity=0.311 Sum_probs=61.6
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 56753799974698877568999999999962699499997879898603343899878988863184561243376532
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
-|.| .|+++| +--|||||+-=.|. |.++..+---+ ||+- +++..
T Consensus 6 ~ksG-~VaivG-~PNvGKSTL~N~l~-------~~k~siVS~k~--~TTR------------------~~i~g------- 49 (296)
T PRK00089 6 FKSG-FVAIVG-RPNVGKSTLLNALV-------GQKISIVSPKP--QTTR------------------HRIRG------- 49 (296)
T ss_pred CCEE-EEEEEC-CCCCCHHHHHHHHH-------CCCEEEECCCC--CCCC------------------CCEEE-------
T ss_conf 8379-999998-99988899999996-------89617614959--9872------------------83899-------
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCC----------CHHHHHHHHHCCCCCCCCCCC
Q ss_conf 0248980687248761203207999999989998512888997388888----------989999986201254357877
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVW----------NSWTQEVLTLSDKVVITTSLD 307 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~----------~~~~~~~L~~AD~vviV~~p~ 307 (427)
++. ...+.++++|+|... ...+..++..||.++++++.+
T Consensus 50 --------i~~-----------------------~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~~ai~~aDlil~viD~~ 98 (296)
T PRK00089 50 --------IVT-----------------------EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDAD 98 (296)
T ss_pred --------EEE-----------------------ECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECC
T ss_conf --------999-----------------------7997999998998667467787899999999997599999998578
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 68899999999999981987675389995658987
Q gi|254780725|r 308 LAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 308 ~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
-.--..-..+++.++.. ..+..+|+|+.+.-+
T Consensus 99 ~~~~~~d~~i~~~l~~~---~kp~ilviNKiDlv~ 130 (296)
T PRK00089 99 EKIGPGDEFILEKLKKV---KTPVILVLNKIDLVD 130 (296)
T ss_pred CCCCHHHHHHHHHHHHC---CCCEEEEEEHHHHCC
T ss_conf 89898899999988874---998899954788428
No 450
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=91.36 E-value=1 Score=23.54 Aligned_cols=109 Identities=17% Similarity=0.241 Sum_probs=66.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--98999998620125435787-768899999999999981-9876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKL-RPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~-~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+-|+|++... .......+..||-+++|... +..|+.+.+.+.+.+.+. .....++.+|-|+++......++.+
T Consensus 48 ~~~l~iwDtaG~e~~~~~~~~y~~~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~ 127 (163)
T cd04136 48 QCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSRE 127 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHH
T ss_conf 99998645765445556789883468769997048988999999999999998618888867876235472640789999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
+.+ .-|...|.+..|.+.+. .+.+.|..|++.|
T Consensus 128 ----------------~~~--~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i 162 (163)
T cd04136 128 ----------------EGQ--ALARQWGCPFYETSAKSKINVDEVFADLVRQI 162 (163)
T ss_pred ----------------HHH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----------------999--99998499899974487805899999999963
No 451
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=91.30 E-value=0.62 Score=24.90 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHCCCCCEEEEEE-----ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 6401873059998-----38989999999886411002022373069989999998618998499998059876778899
Q gi|254780725|r 22 SMCSLPRISVHVF-----CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSAL 96 (427)
Q Consensus 22 ~~~~~~~~~~~~f-----~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l 96 (427)
++.++.|++...- --=+|....|.+--.. -|.+- .-+++-.-.+.. .+|.+|-.|...+ .++++.|
T Consensus 128 QiESLHRV~~~ll~~YDvLILDEVMSti~QlySp-TM~~L------~~VDall~~LLr-~CprIIAMDAT~N-aqlVd~L 198 (829)
T pfam02399 128 QIESLHRVDENLLNNYDVLILDEVMSTIGQLYSP-TMRRL------KEVDALLLRLLR-NCPRIIAMDATVN-AQLVDFL 198 (829)
T ss_pred EEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHCH-HHHHH------HHHHHHHHHHHH-CCCCEEEECCHHH-HHHHHHH
T ss_conf 8511113883342566779857788888876068-88999------999999999985-4982798402042-8999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCC---------------------
Q ss_conf 98885328998089981687189999999765626431899989999976310233222---------------------
Q gi|254780725|r 97 EPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEE--------------------- 155 (427)
Q Consensus 97 ~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~--------------------- 155 (427)
..|+. +..+.|||- ....... +.=+=|+..-+..+.+..++...-.....
T Consensus 199 a~lRG--~~nvhvIv~-~yas~GF------S~R~c~~l~~LG~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (829)
T pfam02399 199 AGLRG--EENVHVIVN-TYASPGF------SNRRCTFLRTLGTDVLASVLRDEDEGAESSATPPHSPSGEPSAAISLRGA 269 (829)
T ss_pred HHHCC--CCCEEEEEE-CCCCCCC------CCCEEEEHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97268--880689981-4526665------66638756433648899872872212234678888876654333566556
Q ss_pred -------CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf -------3456753799974698877568999999999962699499997879898603
Q gi|254780725|r 156 -------GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN 207 (427)
Q Consensus 156 -------~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~ 207 (427)
..-..|+-|+++++ |..-.++...+......+|+++.-.-+-+++.
T Consensus 270 tFF~eL~~rL~~G~NiCiFsS------TvsFSe~vArFc~~ft~sVLvLnS~rp~~DV~ 322 (829)
T pfam02399 270 TFFGELEARLEAGKNVCLFSS------TVSFSEIVARFCARFTDSVLLLNSTRPKCDVN 322 (829)
T ss_pred CHHHHHHHHHHCCCEEEEEEC------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 579999999847980799944------47699999999984589089970899985502
No 452
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=91.22 E-value=0.23 Score=27.54 Aligned_cols=49 Identities=31% Similarity=0.397 Sum_probs=39.9
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
Q ss_conf 567537999746988775689999999999626994999978798986033
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI 208 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~ 208 (427)
-+.|..++|+| +-|.||||+|--+|-.+.- .+.+.+.=|--+++|+...
T Consensus 36 L~~~QTlaiIG-~NGSGKSTLakMlaGmi~P-TsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 36 LREGQTLAIIG-ENGSGKSTLAKMLAGMIEP-TSGEILINDHPLHFGDYSF 84 (267)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHCCCCC-CCCEEEECCCCCCCCCHHH
T ss_conf 60796799982-6997475899998355589-8854878884131234676
No 453
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein; InterPro: IPR005670 This is a family of phosphate transport system permease proteins.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0015114 phosphate transmembrane transporter activity, 0006817 phosphate transport, 0016020 membrane.
Probab=91.18 E-value=1.1 Score=23.43 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=33.3
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHH----CCCCEEEEECCCCCCCCHHH
Q ss_conf 6753799974698877568999999999962----69949999787989860334
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASV----FAMETLLADLDLPYGTANIN 209 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~----~~~~VlLvDlDl~~g~~~~~ 209 (427)
+..+|.|++| ..||||||+-=.|=..--.. ...+|++-+-|......+..
T Consensus 25 ~~n~vTAlIG-PSGCGKSTlLR~lNRMnDl~~~~r~~G~v~f~G~dIy~~~~D~~ 78 (248)
T TIGR00972 25 PKNQVTALIG-PSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (248)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCHH
T ss_conf 3770589877-88986789999988776407881688889864511456566878
No 454
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=91.17 E-value=1.1 Score=23.42 Aligned_cols=70 Identities=10% Similarity=0.211 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHCCCC----CCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC
Q ss_conf 899989999976310233----2223456753799974698877568999999999962699499997879898603343
Q gi|254780725|r 135 EPLSVADIINSISAIFTP----QEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF 210 (427)
Q Consensus 135 ~P~~~~~l~~ai~~~~~~----~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l 210 (427)
.|+....+.+.+...... ..+..++.||.|||+|+ |-.-+++ |+.|++ .|.+|-+.+-....|..- .+
T Consensus 107 ~pV~I~~lkR~~~d~~~~~~~~~~~~~~~tgkkVAVIGa----GPAGLsa--A~~La~-~G~~VtVfE~~~~~GGml-~~ 178 (560)
T PRK12771 107 EAVGINAVERFLGDYAIENGWQFPPPAPDTGKRVAVIGG----GPAGLSA--AYQLRR-LGHAVTIFEAGPKLGGMM-RY 178 (560)
T ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECC----CHHHHHH--HHHHHH-CCCEEEEECCCCCCCCEE-EC
T ss_conf 982027899999999997599789887778998999897----7899999--999997-698589967678889888-35
Q ss_pred CC
Q ss_conf 89
Q gi|254780725|r 211 DK 212 (427)
Q Consensus 211 ~~ 212 (427)
|+
T Consensus 179 GI 180 (560)
T PRK12771 179 GI 180 (560)
T ss_pred CC
T ss_conf 68
No 455
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=91.11 E-value=1.1 Score=23.39 Aligned_cols=108 Identities=12% Similarity=0.169 Sum_probs=68.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCC-CCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--9899999862012543578-77688999999999999819876-753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPAD-KPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~-~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+-++|++... .......+..+|.+++|.+ -+..|+.+.+.+++.++...... .++.+|-|+.+...+ .
T Consensus 48 ~~~l~iwDt~g~~~~~~~~~~~~~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~-~---- 122 (161)
T cd01863 48 KVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR-E---- 122 (161)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCC-C----
T ss_conf 99999999999842353422441321534899767826569999999999998568888737887310440006-8----
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
++.+ ....-|...|.+..|.+.++ -+.+.|..|+++|
T Consensus 123 -------------v~~~-~~~~~a~~~~~~y~e~Sak~g~nV~~~F~~l~~~i 161 (161)
T cd01863 123 -------------VTRE-EGLKFARKHNMLFIETSAKTRDGVQQAFEELVEKI 161 (161)
T ss_pred -------------CCHH-HHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf -------------9999-99999998699999971586815999999999709
No 456
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=91.09 E-value=1.1 Score=23.38 Aligned_cols=108 Identities=21% Similarity=0.279 Sum_probs=68.6
Q ss_pred CCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 8889973888889--8999998620125435787-7688999999999999819-8767538999565898752005999
Q gi|254780725|r 275 FPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 275 yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
+.+-|+|++.... ......+..||-+++|.+. +..|+.+.+++.+.+.+.. ....++.+|-|+.+......++.++
T Consensus 49 ~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e 128 (163)
T cd04176 49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE 128 (163)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf 99999989885425678899855786568971279889999999999999997389996399974313400127699999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--8999999999998
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i 400 (427)
.+ .-|...|.+..|.+.+. .+-+.|.+|+++|
T Consensus 129 ----------------~~--~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i 162 (163)
T cd04176 129 ----------------GR--ALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162 (163)
T ss_pred ----------------HH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf ----------------99--99998599899985687817799999999953
No 457
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.08 E-value=0.47 Score=25.64 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=26.8
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 999746988775689999999999626994999978
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
+..+|+.-|+||||+...+|..+|+ +.+|++|-.
T Consensus 92 ~iLlgGePGIGKSTLlLQ~a~~la~--~~~vLYvSG 125 (454)
T PRK11823 92 VVLIGGDPGIGKSTLLLQVAAALAA--GGKVLYVSG 125 (454)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHC--CCCEEEECC
T ss_conf 8995079988899999999999855--995799815
No 458
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=91.05 E-value=0.94 Score=23.79 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=56.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHH-HHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--989999986201254357877-6889999999999-99819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDV-LKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~-l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++... ......-...+|-+++|.+.+ ..++..++..+.. +........++.++.|+.+.+. .++.+
T Consensus 58 ~~~~~iwD~~G~e~~~~~~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~--~~~~~ 135 (174)
T cd04153 58 NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG--AMTPA 135 (174)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCC--CCCHH
T ss_conf 8899999899986566226777057753799997678889999999999997261016982899995555655--78999
Q ss_pred HHHHHHCC
Q ss_conf 99998489
Q gi|254780725|r 350 DFCAPLGI 357 (427)
Q Consensus 350 ~~~~~lg~ 357 (427)
++.+.++.
T Consensus 136 ei~~~l~l 143 (174)
T cd04153 136 EISESLGL 143 (174)
T ss_pred HHHHHHHH
T ss_conf 99999747
No 459
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=91.04 E-value=0.85 Score=24.06 Aligned_cols=83 Identities=12% Similarity=0.185 Sum_probs=57.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHH-HHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--98999998620125435787-7688999999999-999819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLID-VLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~-~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++... ......-+..|+-++.|.+. +..++..++..+. .++.......++.++.|+.+.+.. ++.+
T Consensus 43 ~~~l~iwD~~G~~~~r~l~~~Y~~~a~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~--~~~~ 120 (159)
T cd04150 43 NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNA--MSAA 120 (159)
T ss_pred CEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC--CCHH
T ss_conf 89999997899721465678647687389999977777899999999999962353369829999975667789--8999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
++.+.++..
T Consensus 121 ei~~~l~l~ 129 (159)
T cd04150 121 EVTDKLGLH 129 (159)
T ss_pred HHHHHHCHH
T ss_conf 999996866
No 460
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=91.04 E-value=0.73 Score=24.46 Aligned_cols=109 Identities=14% Similarity=0.189 Sum_probs=69.0
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|+|++... .......+..||.+++|.. -+..|+.+.+.+++.+++...+..++.+|-|+.+.....+++.++
T Consensus 51 ~~~l~iwDtaG~e~~~~l~~~~~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~~ 130 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEE 130 (165)
T ss_pred EEEEEEEECCCCCCCCCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHH
T ss_conf 99999998999834453507552215666997138998999999999999998769998438887723768628999999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCC-EEEECCCC--HHHHHHHHHHHHH
Q ss_conf 99984895379906879999998847961-89888999--8999999999998
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKM-IHEVDPKS--AIANLLVDFSRVL 400 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~p-i~e~~p~s--~~a~~~~~La~~i 400 (427)
. ..-|...|.+ ..|.+.+. -+-+.|..||+.|
T Consensus 131 ~------------------~~~a~~~~~~~~~E~SAk~~~nV~e~F~~la~~i 165 (165)
T cd01864 131 A------------------CTLAEKNGMLAVLETSAKESQNVEEAFLLMATEL 165 (165)
T ss_pred H------------------HHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHC
T ss_conf 9------------------9999983997699978885819899999999849
No 461
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=90.88 E-value=0.59 Score=25.03 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHCCCEEEEECCC---------HHHHHHHHHC----CC
Q ss_conf 99999999998198767538999565898752005-9999998489537990687---------9999998847----96
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEIS-ISDFCAPLGITPSAIIPFD---------GAVFGMSANS----GK 378 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~-~~~~~~~lg~~~~~~IP~D---------~~~~~~A~~~----G~ 378 (427)
|..+-++-+++.+ -++.+.+|++......|+. .+++++..|.+....=.|. -+.+.++..+ -+
T Consensus 359 NL~~Hi~N~~~fg---~pvVVAIN~F~~Dt~~Ei~~i~~~~~~~g~~~~~s~~wa~GG~Ga~eLA~~Vv~~~e~~~~~f~ 435 (556)
T PRK13505 359 NLERHIENIKKFG---VPVVVAINKFVTDTDAEIAAVKELCEELGVEVALTEVWAKGGEGGVDLAEKVVELIENQPSNFK 435 (556)
T ss_pred HHHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEHHHCCCCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 9999999999719---9769995478998899999999999986998999403431576789999999999856888765
Q ss_pred CEEEECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 18988899989999999999985221223
Q gi|254780725|r 379 MIHEVDPKSAIANLLVDFSRVLMGRVTVS 407 (427)
Q Consensus 379 pi~e~~p~s~~a~~~~~La~~i~gr~~~~ 407 (427)
++ +...-++.+-+..+|++|.|.....
T Consensus 436 ~L--Y~~~~~l~eKIe~IA~~IYgA~~V~ 462 (556)
T PRK13505 436 PL--YDLEDSLEEKIEKIATKIYGAKGVE 462 (556)
T ss_pred CC--CCCCCCHHHHHHHHHHHCCCCCCEE
T ss_conf 65--7999999999999998736888677
No 462
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=90.85 E-value=0.42 Score=25.98 Aligned_cols=12 Identities=8% Similarity=0.196 Sum_probs=4.5
Q ss_pred HCCCCCCCCCCC
Q ss_conf 201254357877
Q gi|254780725|r 296 LSDKVVITTSLD 307 (427)
Q Consensus 296 ~AD~vviV~~p~ 307 (427)
.+|..++|+..+
T Consensus 108 ~aD~aiLVVdA~ 119 (449)
T PTZ00336 108 QADAAILMIDST 119 (449)
T ss_pred CCCEEEEEEECC
T ss_conf 067679999878
No 463
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.65 E-value=0.92 Score=23.85 Aligned_cols=81 Identities=12% Similarity=0.143 Sum_probs=52.9
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--98999998620125435787-768899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++... ..........++-+++|.+. +..++.+++..+..+ +.......++.++.|+.+.+.. ++.+
T Consensus 49 ~~~l~iwD~~Gqe~~~~l~~~y~~~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~--~~~~ 126 (167)
T cd04160 49 NARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA--LSVE 126 (167)
T ss_pred CEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCC--CCHH
T ss_conf 99999996898788878998742898789999866867889999999999751102489629999706676657--7899
Q ss_pred HHHHHHC
Q ss_conf 9999848
Q gi|254780725|r 350 DFCAPLG 356 (427)
Q Consensus 350 ~~~~~lg 356 (427)
++.+.+.
T Consensus 127 ei~~~~~ 133 (167)
T cd04160 127 EIKEVFQ 133 (167)
T ss_pred HHHHHHH
T ss_conf 9999999
No 464
>PRK08104 consensus
Probab=90.63 E-value=1.2 Score=23.12 Aligned_cols=67 Identities=9% Similarity=0.223 Sum_probs=48.7
Q ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 4999980598767788999888532899808998168718999999976562643189998999997631
Q gi|254780725|r 79 DLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 79 ~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
.+-++|+.+.....++.++.|++.. |+. +|=.|..-+....++++.+|++ |++.|..-.++++...+
T Consensus 40 Gi~~iEiTlrt~~a~~~I~~l~~~~-p~~-~vGaGTV~~~e~~~~ai~aGA~-FiVSP~~~~~v~~~a~~ 106 (212)
T PRK08104 40 GVRVLEVTLRTPCALEAIRAIAKEV-PEA-IVGAGTVLNPQQLAEVTEAGAQ-FAISPGLTEELLKAATE 106 (212)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHC-CCC-EEEEEECCCHHHHHHHHHCCCC-EEECCCCCHHHHHHHHH
T ss_conf 9988999688814999999999868-985-6854202679999999985999-99848999999999998
No 465
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=90.56 E-value=1.1 Score=23.27 Aligned_cols=118 Identities=14% Similarity=0.106 Sum_probs=74.1
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 12888997388888--98999998620125435787-768899999999999-981987675389995658987520059
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
..+.+.+.|++... ......-...++-++.|.+. +..++..++..+..+ ........++.++.|+.+.+. .++.
T Consensus 41 ~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~--~~~~ 118 (169)
T cd04158 41 KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSV 118 (169)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--CCCH
T ss_conf 98899999899972446367875557627999998630677999999999997127537984999973556777--9899
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHCCC
Q ss_conf 9999984895379906879999998847961898889--9989999999999985221
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVLMGRV 404 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i~gr~ 404 (427)
+++.+.++..-.. ....-.+.+.+. +.-+-++|.-|++.|...+
T Consensus 119 ~ei~~~l~l~~~~------------~~~~~~i~~~SA~tG~Gi~e~~~WL~~~ii~~~ 164 (169)
T cd04158 119 EEMTELLSLHKLC------------CGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred HHHHHHHCCHHHC------------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999985705452------------699629995557279598999999999998657
No 466
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=90.53 E-value=1.2 Score=23.06 Aligned_cols=85 Identities=18% Similarity=0.228 Sum_probs=59.4
Q ss_pred CCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888898--99999862012543578-7768899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVWNS--WTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++..... .-.+-+..+|-++.|++ .|...+..++..++.+ ........++.++.|+.+.+.. .+.+
T Consensus 62 ~~~~~~wDvgG~~~~R~lW~~Y~~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a--~~~~ 139 (190)
T cd00879 62 NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA--VSEE 139 (190)
T ss_pred CEEEEEEECCCCCCCCCCHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCC--CCHH
T ss_conf 99999998999845554388884311379999977677899999999999985550069808999866677679--8999
Q ss_pred HHHHHHCCCEE
Q ss_conf 99998489537
Q gi|254780725|r 350 DFCAPLGITPS 360 (427)
Q Consensus 350 ~~~~~lg~~~~ 360 (427)
++.+.++..-.
T Consensus 140 ei~~~L~L~~~ 150 (190)
T cd00879 140 ELRQALGLYGT 150 (190)
T ss_pred HHHHHCCCCCC
T ss_conf 99988398420
No 467
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=90.42 E-value=0.7 Score=24.58 Aligned_cols=43 Identities=23% Similarity=0.344 Sum_probs=28.9
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC-CCCC
Q ss_conf 67537999746988775689999999999626994999978-7989
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL-DLPY 203 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl-Dl~~ 203 (427)
+.|+.++++| +.|+||||+..=|-...--. ...+++-|- |+..
T Consensus 409 ~~G~t~AlVG-~SGsGKSTii~LL~RfYdP~-~G~I~i~Dg~di~~ 452 (1467)
T PTZ00265 409 KEGKTYAFVG-ESGCGKSTILKLIERLYDPT-EGDIIINDSHNLKD 452 (1467)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCCCCCHH
T ss_conf 3897799866-88875667999996326889-98699789978020
No 468
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.39 E-value=1.3 Score=22.99 Aligned_cols=33 Identities=15% Similarity=0.189 Sum_probs=16.4
Q ss_pred CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHH
Q ss_conf 718999999976562643189998999997631
Q gi|254780725|r 116 NDVSLYRALISNHVSEYLIEPLSVADIINSISA 148 (427)
Q Consensus 116 ~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~ 148 (427)
.|+.||-+..-.|-+|.=..|....-+-=.+-|
T Consensus 322 e~~Ql~Yqi~l~gr~dl~~ap~~~~g~em~llR 354 (816)
T PRK07003 322 EQVQLFYQIATVGRAELGLAPDEYAGFTMTLLR 354 (816)
T ss_pred HHHHHHHHHHHHCHHHCCCCCCCHHHHHHHHHH
T ss_conf 999999999970344313498811309999999
No 469
>PRK07952 DNA replication protein DnaC; Validated
Probab=90.39 E-value=0.56 Score=25.16 Aligned_cols=33 Identities=21% Similarity=0.309 Sum_probs=27.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 79997469887756899999999996269949999
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
-+-|+| .-|+|||.+|+.+|..|-. .|..|+.+
T Consensus 98 gLlF~G-~~GTGKThLA~aIan~Li~-~G~sVlf~ 130 (242)
T PRK07952 98 SFIFSG-KPGTGKNHLAAAICNELLL-RGKSVLII 130 (242)
T ss_pred EEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEE
T ss_conf 179978-9999789999999999998-79949997
No 470
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=90.38 E-value=0.54 Score=25.26 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=31.9
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 7999746988775689999999999626994999978798
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
||+|.| ..|+||||+...+...+.+ .+.+..+|.+|-.
T Consensus 1 IIaVtG-sSGAGtsTv~r~f~~IF~r-e~v~a~vIegD~f 38 (277)
T cd02029 1 VIAVTG-SSGAGTTTVKRAFEHIFAR-EGIHPAVVEGDSF 38 (277)
T ss_pred CEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCC
T ss_conf 989933-8888478799999998720-5885289967866
No 471
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=90.37 E-value=1.1 Score=23.34 Aligned_cols=112 Identities=12% Similarity=0.130 Sum_probs=70.5
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHH-HHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--8989999986201254357877-6889999999999-99819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDV-LKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~-l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++.. .......-...||-+++|.+.+ ..++..++..+.. +........++.++.|+.+.+. .+...
T Consensus 56 ~~~l~iwD~~Gqe~~r~l~~~Yy~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~--~~~~~ 133 (175)
T smart00177 56 NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPD--AMKAA 133 (175)
T ss_pred CEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCC--CCCHH
T ss_conf 8999999899985455367775577618999986687789999999999996315316986999984566767--88999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHH
Q ss_conf 999984895379906879999998847961898889--998999999999998
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVL 400 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i 400 (427)
++.+.++..... ++.-.+.+.+. +.-+-++|.-|++.|
T Consensus 134 ei~~~l~l~~~~-------------~~~~~i~~~SA~tG~GI~e~f~wL~~~i 173 (175)
T smart00177 134 EITEKLGLHSIR-------------DRNWYIQPTCATSGDGLYEGLTWLSNNL 173 (175)
T ss_pred HHHHHHCHHHHC-------------CCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 999996866540-------------7975999826878969899999999984
No 472
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=90.33 E-value=0.69 Score=24.64 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHH-HHHHHHHHCCCEEEEECCC---------HHHHHHHHHCCCCE-E
Q ss_conf 99999999998198767538999565898752005-9999998489537990687---------99999988479618-9
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEIS-ISDFCAPLGITPSAIIPFD---------GAVFGMSANSGKMI-H 381 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~-~~~~~~~lg~~~~~~IP~D---------~~~~~~A~~~G~pi-~ 381 (427)
|..+-++-+++.+ -++.+.+|++......|+. .+++++..|.+....=.|. -+.+.++.+....+ .
T Consensus 389 NL~~HI~n~~~fg---~pvVVAIN~F~tDT~~Ei~~i~~~~~~~Gv~~a~s~~~a~GG~Ga~eLA~~Vv~~~~~~~~f~~ 465 (587)
T PRK13507 389 NMLHHINTVKKSG---INPVVCINAFATDTHEEIAIVRRTAEQAGARVAVSEHWAKGGEGALELADAVIDACNEPNDFHF 465 (587)
T ss_pred HHHHHHHHHHHCC---CCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEECHHHCCCCCHHHHHHHHHHHHCCCCCCCC
T ss_conf 8999999998518---9849983478888778999999999976998999445541662489999999998617888642
Q ss_pred EECCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 88899989999999999985221223
Q gi|254780725|r 382 EVDPKSAIANLLVDFSRVLMGRVTVS 407 (427)
Q Consensus 382 e~~p~s~~a~~~~~La~~i~gr~~~~ 407 (427)
.+...-++.+-+..+|++|.|.....
T Consensus 466 lY~~~~si~eKIe~IA~~IYgA~~V~ 491 (587)
T PRK13507 466 LYPLEMPLRERIETIAREVYGADGVS 491 (587)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 57999999999999999715998677
No 473
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.32 E-value=1.3 Score=22.95 Aligned_cols=118 Identities=14% Similarity=0.219 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCC---CCH
Q ss_conf 99899999986189984999980598767788999888532899808998168718999999976562643189---998
Q gi|254780725|r 63 GSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEP---LSV 139 (427)
Q Consensus 63 g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P---~~~ 139 (427)
++..+++.++... .-++.+.|.+. ..+.+..++++ .++..+ ..|...+ ....++.-.+.-| .+.
T Consensus 15 ~sG~s~a~~L~~~-G~~v~~~D~~~-~~~~~~~~~~~----~~~i~~-~~g~~~~------~~~~~~d~vV~SPgI~~~~ 81 (445)
T PRK04308 15 GTGISMIAYLRKN-GAEVAAYDAEL-KAERVAQIGKM----FDGLVF-YTGRLKD------ALDNGFDILALSPGISERQ 81 (445)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCC-CCCHHHHHHHC----CCCCEE-EECCCHH------HHCCCCCEEEECCCCCCCC
T ss_conf 9999999999978-99199997999-95318999743----699689-9378636------5015999999899538999
Q ss_pred HHHHHHHHH---CCCCCC----CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 999997631---023322----2345675379997469887756899999999996269949999
Q gi|254780725|r 140 ADIINSISA---IFTPQE----EGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 140 ~~l~~ai~~---~~~~~~----~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
.++..+..+ +....+ --..+..++|+|.|+. ||||++.=+++.|.. .|.++.+.
T Consensus 82 p~l~~a~~~gi~i~~~~el~~~~~~~~~~~~IaVTGTn---GKTTTtsli~~iL~~-~g~~~~~~ 142 (445)
T PRK04308 82 PDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSN---GKTTVTSLVGYLCIK-CGLDTVIA 142 (445)
T ss_pred HHHHHHHHCCCCEECHHHHHHHHHHCCCCCEEEEECCC---CCHHHHHHHHHHHHH-CCCCEEEE
T ss_conf 99999997599571599999999841699579994899---837799999999997-59962998
No 474
>KOG0448 consensus
Probab=90.20 E-value=1.3 Score=22.89 Aligned_cols=76 Identities=13% Similarity=0.206 Sum_probs=55.4
Q ss_pred CEEEECCCCC-----CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 8899738888-----89899999862012543578776889999999999998198767538999565898752005999
Q gi|254780725|r 276 PLVILDVPHV-----WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 276 d~VIiD~p~~-----~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
|.+++|.|.. .+.|.......+|.+|+|+..+-.-....++++....+. ...+.++.||++.......-.++
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~---KpniFIlnnkwDasase~ec~e~ 283 (749)
T KOG0448 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE---KPNIFILNNKWDASASEPECKED 283 (749)
T ss_pred CCEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHCC---CCCEEEEECHHHHHCCCHHHHHH
T ss_conf 501205888888602459999764407758999617638689899999985404---88479996401220263778999
Q ss_pred HHHH
Q ss_conf 9998
Q gi|254780725|r 351 FCAP 354 (427)
Q Consensus 351 ~~~~ 354 (427)
+.+.
T Consensus 284 V~~Q 287 (749)
T KOG0448 284 VLKQ 287 (749)
T ss_pred HHHH
T ss_conf 9998
No 475
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=90.20 E-value=0.46 Score=25.70 Aligned_cols=185 Identities=16% Similarity=0.161 Sum_probs=80.6
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH-HCCCCCCCCHHHHHCCCCCHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033-43899878988863184561243376532
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI-NFDKDPINSISDAIYPVGRIDKAFVSRLP 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~-~l~~~~~~~l~d~l~~~~rlD~~~l~~~l 237 (427)
....+|++.| -+|.||||+|-.|...+.. .++.+|-+|-..-+... .+....... ...|+-+|-.++...+
T Consensus 6 ~~~iiIgIaG-~SgSGKTTv~~~l~~~~~~---~~~~~I~~D~YYk~~~~~~~~~~~~~n----~d~p~A~D~dLl~~~L 77 (218)
T COG0572 6 EKVIIIGIAG-GSGSGKTTVAKELSEQLGV---EKVVVISLDDYYKDQSHLPFEERNKIN----YDHPEAFDLDLLIEHL 77 (218)
T ss_pred CCEEEEEEEC-CCCCCHHHHHHHHHHHHCC---CCCEEEECCCCCCCHHHCCHHHCCCCC----CCCHHHHCHHHHHHHH
T ss_conf 7669999867-9877889999999998286---752476522320253016675537857----4482343689999999
Q ss_pred HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 02489806872487612032079999999899985128889973888889899999862012543578776889999999
Q gi|254780725|r 238 VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNL 317 (427)
Q Consensus 238 ~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~l 317 (427)
...- .+..-....+++....... -..--...++||++-=..+.+ ..+-...|.-+.|-++ ...|-.+++
T Consensus 78 ~~L~------~g~~v~~P~yd~~~~~r~~-~~i~~~p~~VIIvEGi~~l~d--~~lr~~~d~kIfvdt~--~D~RliRri 146 (218)
T COG0572 78 KDLK------QGKPVDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYD--ERLRDLMDLKIFVDTD--ADVRLIRRI 146 (218)
T ss_pred HHHH------CCCCCCCCCCCHHCCCCCC-CCCCCCCCCEEEEECCCCCCC--HHHHHHCCEEEEEECC--CCHHHHHHH
T ss_conf 9997------6992245642031363257-733138972899942300150--7677660678999778--327889988
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCH
Q ss_conf 99999819876753899956589875200599999984895379906879
Q gi|254780725|r 318 IDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDG 367 (427)
Q Consensus 318 l~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~ 367 (427)
..-+...+.. +--|++++....++ ....|-+..+...+..||.-+
T Consensus 147 ~RD~~~rg~~---~~~vi~qy~~~vkp--~~~~fIeptk~~ADiiip~~~ 191 (218)
T COG0572 147 KRDVQERGRD---LESVIEQYVKTVRP--MYEQFIEPTKKYADIIIPSGG 191 (218)
T ss_pred HHHHHHHCCC---HHHHHHHHHHHHCH--HHHHCCCCCCCCCEEEEECCC
T ss_conf 8779881999---89999999986174--146015745111607851588
No 476
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.19 E-value=1.3 Score=22.88 Aligned_cols=86 Identities=9% Similarity=0.188 Sum_probs=61.8
Q ss_pred EECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCH
Q ss_conf 30699899999986189984999980598767788999888532899808998168718999999976562643189998
Q gi|254780725|r 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSV 139 (427)
Q Consensus 60 v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~ 139 (427)
++..+...|.+....--.-.+=++|+.+...+.++.++.+++.. |+.. |=.|..-|....++++.+|++ |++.|...
T Consensus 21 lr~~~~~~a~~~~~al~~gGi~~iEITlrt~~a~~~I~~l~~~~-p~~~-vGaGTVl~~e~~~~a~~aGA~-FiVSP~~~ 97 (212)
T PRK06015 21 LLIDDVEHAVPLARALARGGLPAIEITLRTPAALDAIRAVAAEV-EEAI-VGAGTILNAKQFEDAAKAGSR-FIVSPGTT 97 (212)
T ss_pred EECCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHC-CCCE-EEEEECCCHHHHHHHHHCCCC-EEECCCCC
T ss_conf 97799999999999999879988999689951999999999869-9967-954211569999999984998-99858999
Q ss_pred HHHHHHHHH
Q ss_conf 999997631
Q gi|254780725|r 140 ADIINSISA 148 (427)
Q Consensus 140 ~~l~~ai~~ 148 (427)
.++++...+
T Consensus 98 ~~v~~~a~~ 106 (212)
T PRK06015 98 QELLAAAND 106 (212)
T ss_pred HHHHHHHHH
T ss_conf 999999998
No 477
>pfam07279 DUF1442 Protein of unknown function (DUF1442). This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=90.19 E-value=1.3 Score=22.88 Aligned_cols=73 Identities=12% Similarity=0.093 Sum_probs=48.7
Q ss_pred EEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 99816871899999997656264318999899999763102332223456753799974698877568999999999962
Q gi|254780725|r 110 IVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV 189 (427)
Q Consensus 110 ivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~ 189 (427)
+|=+.++-...|..-++.+-++ +--+..|++.|++ ++-.+|.|....+.|+...||||...|. ++
T Consensus 3 lvWSpE~A~KAYl~Tvk~~~~~---~ep~vaEfiSAlA---------AG~nAkLiVe~~s~~~~~~tsiaLaaAA---~~ 67 (218)
T pfam07279 3 LVWSPETASKAYIDTVKSCENL---GTPGAAELLAAMA---------AGWNARLIVETWSEGDPIATSVGLNVAS---RH 67 (218)
T ss_pred CEECHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHH---------CCCCCEEEEEEECCCCCCHHHHHHHHHH---HH
T ss_conf 1567158899999999861245---8977899999985---------7666459999713788502589999998---74
Q ss_pred C-CCCEEEE
Q ss_conf 6-9949999
Q gi|254780725|r 190 F-AMETLLA 197 (427)
Q Consensus 190 ~-~~~VlLv 197 (427)
. |+-||++
T Consensus 68 TgGR~VCIl 76 (218)
T pfam07279 68 TNGRHICIV 76 (218)
T ss_pred CCCEEEEEC
T ss_conf 398289983
No 478
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=90.18 E-value=1.3 Score=22.88 Aligned_cols=114 Identities=15% Similarity=0.215 Sum_probs=72.6
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--898999998620125435787-7688999999999999819-876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+-|+|++.. +.......+..+|-+++|.+- +..|+.+...+.+.+.+.+ ....++.+|-|+++.....+++.+
T Consensus 49 ~~~l~iwDtaGqe~~~~l~~~~~r~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~ 128 (172)
T cd04141 49 PALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTE 128 (172)
T ss_pred EEEEEEEECCCCCCCCCCHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHH
T ss_conf 99999997888513574515564278656887316888899999999999999728899868998504566761888999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 99998489537990687999999884796189888999--899999999999852212
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~ 405 (427)
+ ...-|...|-+..|.+.+. -+-+.|..|++.|..+..
T Consensus 129 e------------------~~~~a~~~~~~f~EtSAk~~~nV~e~F~~l~~~i~~k~~ 168 (172)
T cd04141 129 E------------------GRNLAREFNCPFFETSAALRHYIDDAFHGLVREIRRKES 168 (172)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9------------------999999859979997478882889999999999986357
No 479
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=90.05 E-value=1.4 Score=22.81 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=31.2
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 45675379997469887756899999999996269949999787989
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
.-+.|.+++++| .-|+||||+.--++-.+.-. ..++.+-+-|...
T Consensus 22 ~v~~GEi~~liG-~nGaGKSTll~~l~G~~~p~-~G~I~~~G~~~~~ 66 (182)
T cd03215 22 EVRAGEIVGIAG-LVGNGQTELAEALFGLRPPA-SGEITLDGKPVTR 66 (182)
T ss_pred EECCCCEEEEEC-CCCCCCCHHHHHHCCCCCCC-CCEEEECCEECCC
T ss_conf 985996999988-89999263778766986788-7759999999886
No 480
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=90.04 E-value=1.3 Score=22.85 Aligned_cols=83 Identities=11% Similarity=0.128 Sum_probs=56.3
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 288899738888--8989999986201254357877-68899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++.. .......-...++-+++|.+.+ ..++..++..+..+ ........++.++.|+.+.+. .++.+
T Consensus 52 ~~~l~iwD~~Gqe~~r~l~~~y~~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~--~~~~~ 129 (168)
T cd04149 52 NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPD--AMKPH 129 (168)
T ss_pred CEEEEEEECCCCCCCCCHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCC--CCCHH
T ss_conf 8899999899997466065764378866899983776789999999999997145227986999997566777--88999
Q ss_pred HHHHHHCCC
Q ss_conf 999984895
Q gi|254780725|r 350 DFCAPLGIT 358 (427)
Q Consensus 350 ~~~~~lg~~ 358 (427)
++.+.++..
T Consensus 130 ei~~~l~l~ 138 (168)
T cd04149 130 EIQEKLGLT 138 (168)
T ss_pred HHHHHHCHH
T ss_conf 999997876
No 481
>PRK04213 GTP-binding protein; Provisional
Probab=90.04 E-value=1.4 Score=22.80 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=27.9
Q ss_pred HHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCE
Q ss_conf 999999998198767538999565898752005999999848953
Q gi|254780725|r 315 KNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITP 359 (427)
Q Consensus 315 ~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~ 359 (427)
..+++++++.+ .++.+|+|+++.-+..+.....+++.++...
T Consensus 112 ~~i~~~l~~~~---~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~ 153 (195)
T PRK04213 112 VEMFDFLRELG---INPIVAVNKMDKIKNSEEVLDEIAERLGLYP 153 (195)
T ss_pred HHHHHHHHHCC---CCEEEEEECHHHCCCHHHHHHHHHHHHHCCC
T ss_conf 99999998749---9879999873305877888999999982576
No 482
>PRK00049 elongation factor Tu; Reviewed
Probab=90.03 E-value=0.82 Score=24.18 Aligned_cols=66 Identities=11% Similarity=0.042 Sum_probs=44.7
Q ss_pred CCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
Q ss_conf 288899738888--89899999862012543578776889999999999998198767538999565898
Q gi|254780725|r 274 IFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341 (427)
Q Consensus 274 ~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~ 341 (427)
.+.|.++|+|.. +-..+..-...+|..++|+..+-.-...++.-+..++.++. ..+.+++|+++.-
T Consensus 75 ~~~~~~iD~PGH~~fiknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv--~~~iV~vnK~D~v 142 (397)
T PRK00049 75 KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGV--PYIVVFLNKCDMV 142 (397)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCC--CEEEEEEECCCCC
T ss_conf 8149995178638889998730121567999997488866528999999998099--8279999866888
No 483
>pfam01935 DUF87 Domain of unknown function DUF87. The function of this prokaryotic domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=90.00 E-value=0.61 Score=24.97 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=33.5
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCC
Q ss_conf 53799974698877568999999999962699499997879898
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYG 204 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g 204 (427)
.|-++|+| +-|.|||.++..|...+.+..+..++++|..--.+
T Consensus 23 ~rH~aIlg-~TGsGKS~tv~vLl~~l~~~~~~~vlVfDpHgEY~ 65 (218)
T pfam01935 23 SRHFAILG-STGSGKSNTVAVLLEELLEKKGATVLIFDPHGEYG 65 (218)
T ss_pred HHHEEEEC-CCCCCHHHHHHHHHHHHHHCCCCCEEEECCCCCCH
T ss_conf 42147872-69997699999999999854799789982886363
No 484
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.98 E-value=1.4 Score=22.78 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=31.0
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 9999976310233222345675379997469887756899999999996
Q gi|254780725|r 140 ADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIAS 188 (427)
Q Consensus 140 ~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~ 188 (427)
+.+..++.+... .+|.+..+-|.|. -|+||||+|--+|.+|--
T Consensus 24 e~Vv~tL~nAI~-----~gRIaHAYLF~GP-RGvGKTT~ARIfAKaLNC 66 (718)
T PRK07133 24 DHIIETLKNIIK-----SGKISHAYLFSGP-HGTGKTSVAKIFANALNC 66 (718)
T ss_pred HHHHHHHHHHHH-----CCCCCCEEEEECC-CCCCHHHHHHHHHHHHCC
T ss_conf 999999999997-----4997505862389-986889999999999679
No 485
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=89.95 E-value=1.4 Score=22.76 Aligned_cols=77 Identities=14% Similarity=0.228 Sum_probs=28.3
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHC-CCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 83898999999988641100202237306998999999861-89984999980598767788999888532899808998
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSD-SSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~-~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
|.---.+...+-.+..+.++.-...+ |.++-.-|.+.|.. +--|-+.++-.+....+++. .|++.---++|+|+|
T Consensus 21 FGiPG~~i~~~~dal~~~~i~~I~~R-HEq~Aa~mAdgyar~TGkpgV~~~tsGPGatN~~t---gla~A~~d~~Pll~i 96 (550)
T COG0028 21 FGIPGGSILPLYDALYDSGIRHILVR-HEQGAAFAADGYARATGKPGVCLVTSGPGATNLLT---GLADAYMDSVPLLAI 96 (550)
T ss_pred EECCCCCHHHHHHHHHHCCCCEEEEC-CHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHH---HHHHHHHCCCCEEEE
T ss_conf 95878127899999987698089867-58999999999999829987999767976888899---999998719988999
Q ss_pred EC
Q ss_conf 16
Q gi|254780725|r 113 GD 114 (427)
Q Consensus 113 g~ 114 (427)
+.
T Consensus 97 tG 98 (550)
T COG0028 97 TG 98 (550)
T ss_pred EC
T ss_conf 57
No 486
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=89.95 E-value=0.7 Score=24.58 Aligned_cols=64 Identities=27% Similarity=0.493 Sum_probs=43.1
Q ss_pred CEEEECCCCCCC---------HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 889973888889---------8999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 276 PLVILDVPHVWN---------SWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 276 d~VIiD~p~~~~---------~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
.++++|+|.... ..+...+..+|.+++|++.+......-..++..+... ..++.+|+|+++.-.
T Consensus 46 ~i~lvDtpG~~~~~~~~~~~~~~~~~~~~~~D~il~viD~~~~~~~~~~~~l~~l~~~---~~p~i~v~NK~D~~~ 118 (163)
T cd00880 46 PVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRER---GKPVLLVLNKIDLLP 118 (163)
T ss_pred EEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHH---CCCEEEEEECEECCC
T ss_conf 5999727985222310168999999999868989999878999755669999999971---974278853420678
No 487
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=89.95 E-value=0.99 Score=23.65 Aligned_cols=85 Identities=15% Similarity=0.178 Sum_probs=56.3
Q ss_pred HCCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 128889973888889--899999862012543578-7768899999999999-981987675389995658987520059
Q gi|254780725|r 273 QIFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
..+.+.+.|++.... +.-.+-...++-++.|++ -|...+..++..+..+ ........++.++.|+.+.+.. ++.
T Consensus 41 ~~~~l~~~DlgG~~~~R~lW~~Y~~~~~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a--~~~ 118 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNA--LLG 118 (167)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCC--CCH
T ss_conf 999999998998778889999873477657999855758899999999999965887789959999886576158--999
Q ss_pred HHHHHHHCCCE
Q ss_conf 99999848953
Q gi|254780725|r 349 SDFCAPLGITP 359 (427)
Q Consensus 349 ~~~~~~lg~~~ 359 (427)
.++.+.|+..-
T Consensus 119 ~ei~~~L~L~~ 129 (167)
T cd04161 119 ADVIEYLSLEK 129 (167)
T ss_pred HHHHHHHCCHH
T ss_conf 99998819742
No 488
>pfam01081 Aldolase KDPG and KHG aldolase. This family includes the following members: 4-hydroxy-2-oxoglutarate aldolase (KHG-aldolase) Phospho-2-dehydro-3-deoxygluconate aldolase (KDPG-aldolase)
Probab=89.93 E-value=1.4 Score=22.75 Aligned_cols=85 Identities=9% Similarity=0.142 Sum_probs=55.8
Q ss_pred ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHH
Q ss_conf 06998999999861899849999805987677889998885328998089981687189999999765626431899989
Q gi|254780725|r 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVA 140 (427)
Q Consensus 61 ~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~ 140 (427)
+......|.+....--.-.+=++|+.....+.++.++.+++.. |+. .|=.|...+..-.++++++|++ |++.|....
T Consensus 15 r~~~~~~a~~~~~al~~~Gi~~iEiTl~t~~a~~~I~~l~~~~-p~~-~iGaGTV~~~e~~~~a~~aGA~-FivSP~~~~ 91 (196)
T pfam01081 15 VIKDKEDALPLAEALAAGGIRVLEVTLRTPCALDAIRLLRKNR-PDA-LVGAGTVLNAQQLAEAAEAGAQ-FVVSPGLTA 91 (196)
T ss_pred ECCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHC-CCC-EEEEEECCCHHHHHHHHHCCCC-EEECCCCHH
T ss_conf 7799999999999999879988999479827999999999649-996-7999837689999999974999-999787639
Q ss_pred HHHHHHHH
Q ss_conf 99997631
Q gi|254780725|r 141 DIINSISA 148 (427)
Q Consensus 141 ~l~~ai~~ 148 (427)
++++...+
T Consensus 92 ~v~~~a~~ 99 (196)
T pfam01081 92 DLLKHAVD 99 (196)
T ss_pred HHHHHHHH
T ss_conf 99999997
No 489
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=89.91 E-value=0.54 Score=25.29 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=27.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEC
Q ss_conf 67537999746988775689999999999626994999978
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADL 199 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDl 199 (427)
+.|..||++| +.|+||||+..-++-.+--+ ..++.+-+.
T Consensus 362 ~~GEkvAIlG-~SGsGKSTllqLl~~~~~~~-~G~i~~~g~ 400 (573)
T COG4987 362 AQGEKVAILG-RSGSGKSTLLQLLAGAWDPQ-QGSITLNGV 400 (573)
T ss_pred CCCCEEEEEC-CCCCCHHHHHHHHHHCCCCC-CCEEEECCC
T ss_conf 5887688877-99987899999997235878-873657886
No 490
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD; InterPro: IPR014138 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are related families..
Probab=89.85 E-value=0.31 Score=26.79 Aligned_cols=203 Identities=12% Similarity=0.117 Sum_probs=97.3
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCC-------C
Q ss_conf 56753799974698877568999999999962---6994999978798986033438998789888631845-------6
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASV---FAMETLLADLDLPYGTANINFDKDPINSISDAIYPVG-------R 227 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~---~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~-------r 227 (427)
-+.|+|++.+| +.|+|||+.+..+=-.|... ...++.+=+-++. +...-....-....+.-++++|- .
T Consensus 9 lk~G~~~aLvG-~SGSGKS~tc~A~Lg~L~~~~~~~~G~i~l~G~~~~-~~p~kemr~~Rg~~~~~imQnPr~AFNPl~t 86 (239)
T TIGR02770 9 LKRGEVLALVG-ESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLL-ALPKKEMRSIRGRHIATIMQNPRTAFNPLLT 86 (239)
T ss_pred EECCEEEEEEC-CCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCCCCC-CCCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
T ss_conf 33243788874-878758999999850358652231026677172314-5873689988666630110285000016763
Q ss_pred HHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHH-----------HHHHCCCEEEECCCCCCCHHH-HHHHH
Q ss_conf 124337653202489806872487612032079999999899-----------985128889973888889899-99986
Q gi|254780725|r 228 IDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLD-----------ILEQIFPLVILDVPHVWNSWT-QEVLT 295 (427)
Q Consensus 228 lD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~-----------~l~~~yd~VIiD~p~~~~~~~-~~~L~ 295 (427)
+...+.|++...+. +.. .++...+++ .+-+.|+| .+..++-.-. .+...
T Consensus 87 m~~h~~ETl~~~~k--------~~k--------~~A~~~~~~~l~~VgL~~~~~~L~~YPF---~LSGGMLQRvMIAlA~ 147 (239)
T TIGR02770 87 MAEHAIETLRSLGK--------LSK--------KQARALILEALEAVGLEDPEEVLKKYPF---QLSGGMLQRVMIALAL 147 (239)
T ss_pred HHHHHHHHHHHHCC--------CCC--------CCHHHHHHHHHHHCCCHHHHHHHHHCCC---CCCCCHHHHHHHHHHH
T ss_conf 99999999997217--------461--------0179999999986385227999974664---1368627899999999
Q ss_pred HCCCCCCCC-CCCHH-HHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHH
Q ss_conf 201254357-87768-8999999999999819876753899956589875200599999984895379906879999998
Q gi|254780725|r 296 LSDKVVITT-SLDLA-GLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMS 373 (427)
Q Consensus 296 ~AD~vviV~-~p~~~-slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A 373 (427)
.+.--++.+ +|+-. .+.+..++++.|++.+... -..+++=-.+.. .+.+++..+-.--.+.|-....+..
T Consensus 148 ~~~~PfLiADEPTTdLDv~~Q~~vL~~L~~l~~~~-G~giLLiTHDlg-----VvA~~AD~V~VM~~G~IvE~~~v~~-- 219 (239)
T TIGR02770 148 LLEPPFLIADEPTTDLDVVVQARVLKLLDELRQKR-GTGILLITHDLG-----VVARLADEVAVMDDGRIVERGTVKE-- 219 (239)
T ss_pred HHCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEHHHH-----HHHHHHHHHHHHHCCEEEECCCHHH--
T ss_conf 85571014179983877999999999999998751-872265200078-----9999987998876780676488788--
Q ss_pred HHCCCCEEE-ECCCCHHHHHHHH
Q ss_conf 847961898-8899989999999
Q gi|254780725|r 374 ANSGKMIHE-VDPKSAIANLLVD 395 (427)
Q Consensus 374 ~~~G~pi~e-~~p~s~~a~~~~~ 395 (427)
++. +.|+|.+++.+..
T Consensus 220 ------~F~sy~P~h~~tr~L~~ 236 (239)
T TIGR02770 220 ------LFQSYNPKHETTRKLLS 236 (239)
T ss_pred ------HHCCCCCCHHHHHHHHH
T ss_conf ------73257971279999987
No 491
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=89.84 E-value=1.3 Score=22.97 Aligned_cols=19 Identities=26% Similarity=0.214 Sum_probs=7.3
Q ss_pred CHHHHHHHHHCCCCCCCCC
Q ss_conf 9899999862012543578
Q gi|254780725|r 287 NSWTQEVLTLSDKVVITTS 305 (427)
Q Consensus 287 ~~~~~~~L~~AD~vviV~~ 305 (427)
++.|...|.++|..++|++
T Consensus 95 SEDTYRtLtAvDsAvMVID 113 (528)
T COG4108 95 SEDTYRTLTAVDSAVMVID 113 (528)
T ss_pred CHHHHHHHHHHHEEEEEEE
T ss_conf 2367899986410468986
No 492
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=89.83 E-value=1.4 Score=22.71 Aligned_cols=112 Identities=11% Similarity=0.169 Sum_probs=71.5
Q ss_pred CEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCHHHHHHH
Q ss_conf 8899738888--898999998620125435787-768899999999999981-987675389995658987520059999
Q gi|254780725|r 276 PLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKL-RPADKPPYLVLNQVKTPKKPEISISDF 351 (427)
Q Consensus 276 d~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~-~~~~~~~~iVlNr~~~~~~~~i~~~~~ 351 (427)
..-|+|++.. +...+..-...|+-+++|.+- +..|+.+...+++.++.. .+...++.+|-|+.+......
T Consensus 53 ~l~IwDTaGqe~~~si~~~yyr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~------ 126 (211)
T cd04111 53 KLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQ------ 126 (211)
T ss_pred EEEEEECCCCCCCCCCHHHHHHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCC------
T ss_conf 99999798863456442877421244689714777799999999999999974988853898874231285678------
Q ss_pred HHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 998489537990687999999884796189888999--899999999999852212
Q gi|254780725|r 352 CAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 352 ~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~ 405 (427)
++.+ +.-.-|..+|-+..|.+.++ -+-+.|..|++.|..+..
T Consensus 127 -----------Vs~e-e~~~~A~~~~~~f~EtSAK~g~nV~e~F~~la~~i~~~~~ 170 (211)
T cd04111 127 -----------VTRE-EAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERIK 170 (211)
T ss_pred -----------CCHH-HHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf -----------8999-9999999839979997599981989999999999999987
No 493
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=89.83 E-value=1.4 Score=22.70 Aligned_cols=46 Identities=17% Similarity=0.233 Sum_probs=17.4
Q ss_pred CCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf 9980899816871899999997656264318999899999763102
Q gi|254780725|r 105 SGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 105 p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
|--.|+.|=...|+.-+-.-+-.-..-|-.++++..++...+..+.
T Consensus 146 Pp~hv~filaTT~~~k~p~TilSRC~~f~~~~~~~~~i~~~l~~i~ 191 (643)
T PRK07994 146 PPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (643)
T ss_pred CCHHCEEEEECCCHHHCCHHHHHHHHHEECCCCCHHHHHHHHHHHH
T ss_conf 8610089986077454847899777650016699999999999999
No 494
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=89.83 E-value=1.4 Score=22.70 Aligned_cols=42 Identities=17% Similarity=0.173 Sum_probs=28.9
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCC
Q ss_conf 56753799974698877568999999999962699499997879
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDL 201 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl 201 (427)
-+.|.+++++| .-|+||||+---++-.+.-. ..++.+-+.|+
T Consensus 23 i~~Gei~gl~G-~NGaGKSTLl~~i~Gl~~p~-~G~i~i~g~~~ 64 (173)
T cd03230 23 VEKGEIYGLLG-PNGAGKTTLIKIILGLLKPD-SGEIKVLGKDI 64 (173)
T ss_pred ECCCCEEEEEC-CCCCCHHHHHHHHHCCCCCC-CCEEEECCEEC
T ss_conf 87993999987-89979999999997685778-78899999998
No 495
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=89.80 E-value=1.4 Score=22.69 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=74.5
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--98999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
.+.+-|.|++..- .......+..||-+++|.+. +..|+.+..++++.+.+..+ ..++.+|-|+++...+. ..
T Consensus 48 ~v~l~iwDtaGqe~~~~l~~~y~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~-~~piilVgNK~Dl~~~~-~~--- 122 (166)
T cd00877 48 KIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-NIPIVLCGNKVDIKDRK-VK--- 122 (166)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCC-CCCEEEEEECCCCCCCC-CC---
T ss_conf 99999997578715666878874006579984378988899999999999998689-99899999862175036-67---
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCC
Q ss_conf 9998489537990687999999884796189888999--899999999999852212
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVT 405 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~ 405 (427)
.+....+...+.+..|.+.+. -+-+.|..|++.|...+.
T Consensus 123 ----------------~~~~~~~~~~~~~~~EtSAk~~~nV~e~F~~la~~il~~~~ 163 (166)
T cd00877 123 ----------------AKQITFHRKKNLQYYEISAKSNYNFEKPFLWLARKLLGNPN 163 (166)
T ss_pred ----------------HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf ----------------99999999789989998458990989999999999842899
No 496
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=89.79 E-value=1.4 Score=22.68 Aligned_cols=111 Identities=15% Similarity=0.155 Sum_probs=66.0
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCC-HHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 2888997388888--989999986201254357877-68899999999999-9819876753899956589875200599
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLD-LAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~-~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
.+.+.+.|++... .......+..+|-+++|.+.+ ..++..++..+..+ ........++.+|.|+.+.+. ..+.+
T Consensus 57 ~~~~~iwDt~Gqe~~~~~~~~y~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~--~~~~~ 134 (174)
T pfam00025 57 NVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPG--AMSEA 134 (174)
T ss_pred CEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC--CCCHH
T ss_conf 9999998279870232679988417826899986786787999999999987542358970899872566767--89999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--899999999999
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRV 399 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~ 399 (427)
++.+.++.... .+..-++.+.+.++ -+-+.|..|++.
T Consensus 135 ei~~~~~~~~~-------------~~~~~~~~~~SAktG~gI~e~f~~L~~~ 173 (174)
T pfam00025 135 EIRELLGLHEL-------------KSRPWEIQGCSAVTGEGLDEGLDWLSNY 173 (174)
T ss_pred HHHHHHHHHHC-------------CCCCCEEEEEECCCCCCHHHHHHHHHHH
T ss_conf 99999978644-------------1799689999886795989999999953
No 497
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=89.76 E-value=0.78 Score=24.29 Aligned_cols=41 Identities=22% Similarity=0.258 Sum_probs=28.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECC
Q ss_conf 5675379997469887756899999999996269949999787
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlD 200 (427)
-..|.+++++| .-|+||||+.--++-.+.-.. .+|.+-.-|
T Consensus 31 i~~Gei~~iiG-pnGsGKSTLlk~i~Gl~~p~~-G~I~~~G~~ 71 (269)
T PRK11831 31 VPRGKITAIMG-PSGIGKTTLLRLIGGQIAPDH-GEILFDGEN 71 (269)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCCCC-CEEEECCEE
T ss_conf 87998999993-999759999999967988898-669999988
No 498
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=89.76 E-value=1.4 Score=22.67 Aligned_cols=72 Identities=18% Similarity=0.223 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHC-CC----CCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHH
Q ss_conf 1899989999976310-23----322234567537999746988775689999999999626994999978798986033
Q gi|254780725|r 134 IEPLSVADIINSISAI-FT----PQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANI 208 (427)
Q Consensus 134 ~~P~~~~~l~~ai~~~-~~----~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~ 208 (427)
-.|++...+.+.+... +. .+.....+.||.|||+|+ | =.-++ .|+.|++ .|.+|.+.|-....|.+-
T Consensus 111 ~~pV~I~~ler~~~d~~~~~~~~~p~~~~~~~gkkVAVIGs-G---PAGLs--aA~~Lar-~G~~VtVfE~~~~~GGll- 182 (472)
T PRK12810 111 DGAVTIKNIERYIIDKAFAEGWVRPDPPKVKTGKKVAVVGS-G---PAGLA--AADQLAR-AGHKVTVFERDDRIGGLL- 182 (472)
T ss_pred CCCEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC-C---HHHHH--HHHHHHH-CCCEEEEEECCCCCCCEE-
T ss_conf 99837318899999999973995788886668998999897-7---89999--9999986-697589972577777546-
Q ss_pred HCCCC
Q ss_conf 43899
Q gi|254780725|r 209 NFDKD 213 (427)
Q Consensus 209 ~l~~~ 213 (427)
.+|+.
T Consensus 183 ~yGIP 187 (472)
T PRK12810 183 RYGIP 187 (472)
T ss_pred EECCC
T ss_conf 53178
No 499
>TIGR01054 rgy reverse gyrase; InterPro: IPR005736 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis , . DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA . Type I topoisomerases are ATP-independent enzymes (except for reverse gyrase), and can be subdivided according to their structure and reaction mechanisms: type IA (bacterial and archaeal topoisomerase I, topoisomerase III and reverse gyrase) and type IB (eukaryotic topoisomerase I and topoisomerase V). These enzymes are primarily responsible for relaxing positively and/or negatively supercoiled DNA, except for reverse gyrase, which can introduce positive supercoils into DNA. Reverse gyrase is a type IA topoisomerase that is unique among these enzymes in its requirement for ATP. Reverse gyrase is a hyperthermophile-specific enzyme that acts as a renaturase by positively supercoiling DNA, and by annealing complementary single-strand circles . Hyperthermophilic organisms must protect themselves against heat-induced degradation, and reverse gyrase acts to reduce the rate of double-strand DNA breakage, a function that does not require ATP hydrolysis and which is independent of its positive supercoiling abilities. Reverse gyrase achieves this by recognising nicked DNA and recruiting a protein coat to the site of damage . More information about this protein can be found at Protein of the Month: DNA Topoisomerase .; GO: 0003677 DNA binding, 0003916 DNA topoisomerase activity, 0006265 DNA topological change, 0006268 DNA unwinding during replication, 0005694 chromosome.
Probab=89.75 E-value=0.41 Score=25.99 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=83.2
Q ss_pred HHHHHHHHHCC-----CCEEECCCCCHHHHHHHHHHCCCC-CCCCC----C--CCCEEEEEEECCCCCCHHHHHHHHHHH
Q ss_conf 89999999765-----626431899989999976310233-22234----5--675379997469887756899999999
Q gi|254780725|r 118 VSLYRALISNH-----VSEYLIEPLSVADIINSISAIFTP-QEEGK----G--SSGCSISFIGSRGGVGSSTIAHNCAFS 185 (427)
Q Consensus 118 ~~l~r~l~r~G-----v~dyl~~P~~~~~l~~ai~~~~~~-~~~~~----~--~~grvIav~g~KGGvGkTTiA~nLA~~ 185 (427)
..+++.|-+.| ..||+..-....++.+.+...... +-.-+ . -.|+..|++-. =||||||+-...|..
T Consensus 44 ~~vc~~Lr~~~TL~~~~K~~~~~~~~~k~f~~FF~~~~G~~pws~Qk~WAKRv~~~~SFai~AP-TGVGKttFG~~mslf 122 (1843)
T TIGR01054 44 LKVCRALRKEKTLKAYLKEYCSLDEELKEFEEFFKKAVGSEPWSIQKSWAKRVLKGDSFAIVAP-TGVGKTTFGLVMSLF 122 (1843)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEECC-CCCCHHHHHHHHHHH
T ss_conf 9999999605872112155433789999999999997188843567999999641796489805-887677999999999
Q ss_pred HHHHCCCCEEEEECCCCCCCCHHH-------CCCCCCCCHHH-HHCCCCCHHHHHHHHHHHCCCC-CEEEEECCCCCCCH
Q ss_conf 996269949999787989860334-------38998789888-6318456124337653202489-80687248761203
Q gi|254780725|r 186 IASVFAMETLLADLDLPYGTANIN-------FDKDPINSISD-AIYPVGRIDKAFVSRLPVFYAE-NLSILTAPAMLSRT 256 (427)
Q Consensus 186 LA~~~~~~VlLvDlDl~~g~~~~~-------l~~~~~~~l~d-~l~~~~rlD~~~l~~~l~~~~~-gL~lL~a~~~~~~~ 256 (427)
||...|+|+.+| ++...+... +..+...++.. +..-.+++...-=+..+-+... ..++|-+
T Consensus 123 lA~kKGkR~y~i---lPT~lLv~Qv~~kl~~~~~k~g~~~~~l~~~yhS~L~~~~kke~~Eri~~GDfdilit------- 192 (1843)
T TIGR01054 123 LAKKKGKRSYII---LPTTLLVKQVAEKLSSLAEKEGVGIVRLLGAYHSKLSTKEKKEVKERIENGDFDILIT------- 192 (1843)
T ss_pred HHHHCCCEEEEE---ECHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCEEEEHH-------
T ss_conf 865429878999---4707889999999875200257500002221011265456788999873189178612-------
Q ss_pred HCCCHHHHHHHHHHHH--HCCCEEEEC
Q ss_conf 2079999999899985--128889973
Q gi|254780725|r 257 YDFDEKMIVPVLDILE--QIFPLVILD 281 (427)
Q Consensus 257 ~~~~~~~l~~ll~~l~--~~yd~VIiD 281 (427)
+..-+..-.+.|. -.||+|+||
T Consensus 193 ---T~~FL~K~~~~L~~~y~F~liFVD 216 (1843)
T TIGR01054 193 ---TSMFLSKNFDKLKNQYKFDLIFVD 216 (1843)
T ss_pred ---HHHHHHHHHHHCCCCCEEEEEEEE
T ss_conf ---246888766517898514489971
No 500
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=89.72 E-value=0.42 Score=25.94 Aligned_cols=53 Identities=15% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHC
Q ss_conf 998999997631023322234567537999746988775689999999999626
Q gi|254780725|r 137 LSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVF 190 (427)
Q Consensus 137 ~~~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~ 190 (427)
...+++.+.+-..++-..-.....|.|++|+| --|||||+++-++|.+|.+..
T Consensus 325 yGL~~vKeRile~lAv~~~~~~~kg~IlclvG-pPGvGKTSl~~sIA~al~r~f 377 (784)
T PRK10787 325 YGLERVKDRILEYLAVQSRVNKIKGPILCLVG-PPGVGKTSLGQSIAKATGRKY 377 (784)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEC-CCCCCHHHHHHHHHHHHCCCE
T ss_conf 06577999999999999862467787799646-998772469999999858986
Done!