HHsearch alignment for GI: 254780725 and conserved domain: pfam01656
>pfam01656 CbiA CobQ/CobB/MinD/ParA nucleotide binding domain. This family consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from S.typhimurium, and CobQ from R. capsulatus. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria. The family also contains dethiobiotin synthetases as well as the plasmid partitioning proteins of the MinD/ParA family.
Probab=99.98 E-value=5.5e-31 Score=209.66 Aligned_cols=202 Identities=19% Similarity=0.209 Sum_probs=148.3
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCH-HHHHHHHHH--HCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561-243376532--024
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRI-DKAFVSRLP--VFY 240 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rl-D~~~l~~~l--~~~ 240 (427)
T Consensus 1 Iav~s~KGGVGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (212)
T pfam01656 1 IAIAGTKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKGPDLIDVLKEGLEIVDAQPLQHIAAAIVPSRN 79 (212)
T ss_pred CEEECCCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCCCCCCHHHHCCCCCCCCCCCCCCHHCCCCCHHHHHHEEECCCC
T ss_conf 9897689980699999999999997-899789983899996258865876434444441010112100245642224555
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 89806872487612032079999999899985128889973888889899999862012543578776889999999999
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427)
T Consensus 80 ~~~l~l~p~~~~~~~~~-~~~~~~~~~~~~~~~~~D~viiD~pp~~~~~~~~al~~ad~vivv~~p~~~sl~~~~~l~~~ 158 (212)
T pfam01656 80 LDPLLLIPSNLSLANFE-SELILEGGEEGLIKLAYDYVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGAQRLLEL 158 (212)
T ss_pred CCCEEEECCCHHHHHHH-HHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHH
T ss_conf 58746533501566777-77799999987666049989994799755999999983998999948976999999999999
Q ss_pred HHHCCCCCCCCEEEEECCCCCCCCHH--HHHHHHHHHCCCE---EEEECCCHHH
Q ss_conf 99819876753899956589875200--5999999848953---7990687999
Q gi|254780725|r 321 LKKLRPADKPPYLVLNQVKTPKKPEI--SISDFCAPLGITP---SAIIPFDGAV 369 (427)
Q Consensus 321 l~~~~~~~~~~~iVlNr~~~~~~~~i--~~~~~~~~lg~~~---~~~IP~D~~~ 369 (427)
T Consensus 159 ~~~l~~--~~~gvV~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ip~d~~v 210 (212)
T pfam01656 159 VERLGL--KILGVVLNKVDRGDERHLDKEIEALERKTGIPVLLLLGVIPRDLAL 210 (212)
T ss_pred HHHCCC--CCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCC
T ss_conf 998599--6229999148899836630789999999789975140411687766