HHsearch alignment for GI: 254780725 and conserved domain: pfam02399
>pfam02399 Herpes_ori_bp Origin of replication binding protein. This Pfam family represents the herpesvirus origin of replication binding protein, probably involved in DNA replication.
Probab=91.30 E-value=0.62 Score=24.90 Aligned_cols=162 Identities=14% Similarity=0.196 Sum_probs=74.5
Q ss_pred HHCCCCCEEEEEE-----ECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHH
Q ss_conf 6401873059998-----38989999999886411002022373069989999998618998499998059876778899
Q gi|254780725|r 22 SMCSLPRISVHVF-----CVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSAL 96 (427)
Q Consensus 22 ~~~~~~~~~~~~f-----~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l 96 (427)
T Consensus 128 QiESLHRV~~~ll~~YDvLILDEVMSti~QlySp-TM~~L------~~VDall~~LLr-~CprIIAMDAT~N-aqlVd~L 198 (829)
T pfam02399 128 QIESLHRVDENLLNNYDVLILDEVMSTIGQLYSP-TMRRL------KEVDALLLRLLR-NCPRIIAMDATVN-AQLVDFL 198 (829)
T ss_pred EEECCCCCCHHHCCCCCEEEEHHHHHHHHHHHCH-HHHHH------HHHHHHHHHHHH-CCCCEEEECCHHH-HHHHHHH
T ss_conf 8511113883342566779857788888876068-88999------999999999985-4982798402042-8999999
Q ss_pred HHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCC---------------------
Q ss_conf 98885328998089981687189999999765626431899989999976310233222---------------------
Q gi|254780725|r 97 EPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEE--------------------- 155 (427)
Q Consensus 97 ~~la~~~~p~~~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~--------------------- 155 (427)
T Consensus 199 a~lRG--~~nvhvIv~-~yas~GF------S~R~c~~l~~LG~d~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (829)
T pfam02399 199 AGLRG--EENVHVIVN-TYASPGF------SNRRCTFLRTLGTDVLASVLRDEDEGAESSATPPHSPSGEPSAAISLRGA 269 (829)
T ss_pred HHHCC--CCCEEEEEE-CCCCCCC------CCCEEEEHHHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 97268--880689981-4526665------66638756433648899872872212234678888876654333566556
Q ss_pred -------CCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCH
Q ss_conf -------3456753799974698877568999999999962699499997879898603
Q gi|254780725|r 156 -------GKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTAN 207 (427)
Q Consensus 156 -------~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~ 207 (427)
T Consensus 270 tFF~eL~~rL~~G~NiCiFsS------TvsFSe~vArFc~~ft~sVLvLnS~rp~~DV~ 322 (829)
T pfam02399 270 TFFGELEARLEAGKNVCLFSS------TVSFSEIVARFCARFTDSVLLLNSTRPKCDVN 322 (829)
T ss_pred CHHHHHHHHHHCCCEEEEEEC------HHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
T ss_conf 579999999847980799944------47699999999984589089970899985502