HHsearch alignment for GI: 254780725 and conserved domain: pfam02492

>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=93.24  E-value=0.61  Score=24.97  Aligned_cols=156  Identities=14%  Similarity=0.155  Sum_probs=70.4

Q ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf             99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r  164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN  243 (427)
Q Consensus       164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g  243 (427)
T Consensus         2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~--g~~~--------------------iD~~ll~~~----~~~   53 (174)
T pfam02492         2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDF--GETG--------------------IDAELLRET----GAE   53 (174)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECC--CCHH--------------------HHHHHHHHC----CCE
T ss_conf             69993488788999999999844--4898479999336--5302--------------------079998706----961


Q ss_pred             EEEEECCCCCCC-HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH---HHCCCCCCCCCCCH-HHHHH-HHHH
Q ss_conf             068724876120-320799999998999851288899738888898999998---62012543578776-88999-9999
Q gi|254780725|r  244 LSILTAPAMLSR-TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVL---TLSDKVVITTSLDL-AGLRN-SKNL  317 (427)
Q Consensus       244 L~lL~a~~~~~~-~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L---~~AD~vviV~~p~~-~slr~-a~~l  317 (427)
T Consensus        54 v~el~~GciCc~~~~d~-~~~l~~l~~~~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~  132 (174)
T pfam02492        54 IVELNNGCICCTIREDL-SMVLEALLELKLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKA  132 (174)
T ss_pred             EEEECCCCCCCCCCHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHH
T ss_conf             89974886645433369-99999998557899999999587667707777653202654599999723433002007899


Q ss_pred             HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf             99999819876753899956589875200599999984
Q gi|254780725|r  318 IDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPL  355 (427)
Q Consensus       318 l~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~l  355 (427)
T Consensus       133 ~~---Qi~~AD---~vvlNK~Dl~~~~~~-l~~~~~~i  163 (174)
T pfam02492       133 PD---QIAFAD---LIVINKTDLAPAVGA-LEKLEADL  163 (174)
T ss_pred             HH---HHHHCC---EEEEEHHHCCCCHHH-HHHHHHHH
T ss_conf             99---998769---999846653782769-99999999