HHsearch alignment for GI: 254780725 and conserved domain: pfam02492
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=93.24 E-value=0.61 Score=24.97 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=70.4
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~--~~~~~~avI~Ne~--g~~~--------------------iD~~ll~~~----~~~ 53 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDN--REGLKIAVIVNDF--GETG--------------------IDAELLRET----GAE 53 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHC--CCCCCEEEEEECC--CCHH--------------------HHHHHHHHC----CCE
T ss_conf 69993488788999999999844--4898479999336--5302--------------------079998706----961
Q ss_pred EEEEECCCCCCC-HHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHH---HHCCCCCCCCCCCH-HHHHH-HHHH
Q ss_conf 068724876120-320799999998999851288899738888898999998---62012543578776-88999-9999
Q gi|254780725|r 244 LSILTAPAMLSR-TYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVL---TLSDKVVITTSLDL-AGLRN-SKNL 317 (427)
Q Consensus 244 L~lL~a~~~~~~-~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L---~~AD~vviV~~p~~-~slr~-a~~l 317 (427)
T Consensus 54 v~el~~GciCc~~~~d~-~~~l~~l~~~~~~~~d~iiIE~sGla~p~~i~~~~~~~~~~~~i~vvDa~~~~~~~~~~~~~ 132 (174)
T pfam02492 54 IVELNNGCICCTIREDL-SMVLEALLELKLPRLDLLFIETTGLACPAPVLDLRSDLGLDGVVTVVDVKNFTEGEDIPEKA 132 (174)
T ss_pred EEEECCCCCCCCCCHHH-HHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCEEEEEEECHHHHHCCCCHHHH
T ss_conf 89974886645433369-99999998557899999999587667707777653202654599999723433002007899
Q ss_pred HHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
Q ss_conf 99999819876753899956589875200599999984
Q gi|254780725|r 318 IDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPL 355 (427)
Q Consensus 318 l~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~l 355 (427)
T Consensus 133 ~~---Qi~~AD---~vvlNK~Dl~~~~~~-l~~~~~~i 163 (174)
T pfam02492 133 PD---QIAFAD---LIVINKTDLAPAVGA-LEKLEADL 163 (174)
T ss_pred HH---HHHHCC---EEEEEHHHCCCCHHH-HHHHHHHH
T ss_conf 99---998769---999846653782769-99999999