HHsearch alignment for GI: 254780725 and conserved domain: pfam06745
>pfam06745 KaiC KaiC. This family represents a conserved region within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria.
Probab=94.52 E-value=0.11 Score=29.45 Aligned_cols=45 Identities=16% Similarity=0.221 Sum_probs=35.2
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCC
Q ss_conf 5675379997469887756899999999996269949999787989
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~ 203 (427)
T Consensus 16 i~~gs~~LI~G-~pGsGKT~la~qfl~~ga~~~ge~~lYis~ee~~ 60 (231)
T pfam06745 16 IPEGRVVLITG-GPGTGKTIFGLQFLYNGALEYGEPGVYVTLEEPP 60 (231)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCH
T ss_conf 82996999985-8972599999999999998658968999813799