>pfam07015 VirC1 VirC1 protein. This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon which enhances T-DNA processing probably does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA.

Probab=99.90 E-value=3.4e-21 Score=149.49 Aligned_cols=207 Identities=15% Similarity=0.092 Sum_probs=136.9 Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248 Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427) Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427) T Consensus 2 ~vi~~~~~KGG~GKtT~a~~la~~~~~-~g~~V~liD~Dpq~s-~~~W~---------~~a~~~~~~~------------ 58 (231) T pfam07015 2 QLITFCSFKGGAGKTTALMGLCSALAS-DGKRVALFEADENRP-LTKWR---------ENALRKGTWD------------ 58 (231) T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCC-HHHHH---------HHHHHCCCCC------------ T ss_conf 379996179986599999999999996-899599996899868-89999---------9876468888------------ Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH Q ss_conf 9806872487612032079999999899985-128889973888889899999862012543578776889999999999 Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDV 320 (427) Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~ 320 (427) T Consensus 59 ~~~~v~~~---------~~~~~l~~~~~~~~~~~yD~VIIDtpg~~s~~~~~AI~~ADlVLIP~qpSplD~~~a~~t~~~ 129 (231) T pfam07015 59 PACEIFNA---------DELPLLEQAYEHAEGSGFDYALADTHGGSSELNNTIIASSDLLLIPTMLTPLDIDEALATYRY 129 (231) T ss_pred CCCCEECC---------CCHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHCCEEEECCCCCHHHHHHHHHHHHH T ss_conf 76522205---------660158999998865799989983998575899999997898997789982339999999999 Q ss_pred HHHC---CCCCCCCEEEEECCCCCCCCHHHHHHHHHHHC-CCEEEEECCCHHHHHHHHHCCCCEEEECCCC------HHH Q ss_conf 9981---98767538999565898752005999999848-9537990687999999884796189888999------899 Q gi|254780725|r 321 LKKL---RPADKPPYLVLNQVKTPKKPEISISDFCAPLG-ITPSAIIPFDGAVFGMSANSGKMIHEVDPKS------AIA 390 (427) Q Consensus 321 l~~~---~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg-~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s------~~a 390 (427) T Consensus 130 i~~~~~~~~~~ip~avl~tRv~~~-~~~~~~~~i~e~le~lpvl~t~i~eR~AF~~if~~G~l~~~l~~~~~~~~~~~a~ 208 (231) T pfam07015 130 VIELLLTENLAIPTAILRQRVPVG-RLTSSQRFCSDMLEQLPVFDCPMHERDAFAAMKERGMLHITLENLSQIPSMRLAL 208 (231) T ss_pred HHHHHHHHCCCCCEEEEEEECCCC-CCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCHHCCCCCCCCCHHHHH T ss_conf 999999737899803345511400-0217899999999649854354202899999998046200026877785112899 Q ss_pred HHHHHHHHHHH Q ss_conf 99999999985 Q gi|254780725|r 391 NLLVDFSRVLM 401 (427) Q Consensus 391 ~~~~~La~~i~ 401 (427) T Consensus 209 ~n~~~~~~e~~ 219 (231) T pfam07015 209 RNLRTAMEDLD 219 (231) T ss_pred HHHHHHHHHHH T ss_conf 99999999999

HHsearch alignment for GI: 254780725 and conserved domain: pfam07015