HHsearch alignment for GI: 254780725 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.18 E-value=0.23 Score=27.52 Aligned_cols=111 Identities=15% Similarity=0.176 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 28889973888889--8999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
T Consensus 48 ~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e 127 (164)
T smart00175 48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREE 127 (164)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHH
T ss_conf 99999996799446647799883366536884368998999999999999998679998255116456856518799999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf 9998489537990687999999884796189888999--899999999999852
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG 402 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g 402 (427)
T Consensus 128 ~~------------------~~a~~~~~~~~e~SAk~~~~v~e~F~~l~~~i~k 163 (164)
T smart00175 128 AE------------------AFAEEHGLPFFETSAKTNTNVEEAFEELAREILK 163 (164)
T ss_pred HH------------------HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf 99------------------9999849979998316690889999999999971