HHsearch alignment for GI: 254780725 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=95.18  E-value=0.23  Score=27.52  Aligned_cols=111  Identities=15%  Similarity=0.176  Sum_probs=71.4

Q ss_pred             CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf             28889973888889--8999998620125435787-76889999999999998198767538999565898752005999
Q gi|254780725|r  274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD  350 (427)
Q Consensus       274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~  350 (427)
T Consensus        48 ~~~l~iwDt~G~e~~~~l~~~~~~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e  127 (164)
T smart00175       48 RVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREE  127 (164)
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHH
T ss_conf             99999996799446647799883366536884368998999999999999998679998255116456856518799999


Q ss_pred             HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHC
Q ss_conf             9998489537990687999999884796189888999--899999999999852
Q gi|254780725|r  351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMG  402 (427)
Q Consensus       351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~g  402 (427)
T Consensus       128 ~~------------------~~a~~~~~~~~e~SAk~~~~v~e~F~~l~~~i~k  163 (164)
T smart00175      128 AE------------------AFAEEHGLPFFETSAKTNTNVEEAFEELAREILK  163 (164)
T ss_pred             HH------------------HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHC
T ss_conf             99------------------9999849979998316690889999999999971