RPS-BLAST 2.2.22 [Sep-27-2009]
Database: CddA
21,609 sequences; 6,263,737 total letters
Searching..................................................done
Query= gi|254780725|ref|YP_003065138.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(427 letters)
>gnl|CDD|34570 COG4963, CpaE, Flp pilus assembly protein, ATPase CpaE
[Intracellular trafficking and secretion].
Length = 366
Score = 228 bits (583), Expect = 2e-60
Identities = 110/286 (38%), Positives = 166/286 (58%), Gaps = 7/286 (2%)
Query: 123 ALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNC 182
A I N V D ++ S + ++G+ ++F+G++GGVG+ST+AHN
Sbjct: 71 ADIKNIKENLAAIRAGVNDCVDIESDSISIAQQGR-----ELAFLGAKGGVGTSTLAHNL 125
Query: 183 AFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242
A +A + LL DLDL GTA + D+DP I++A+ R+D+ + L A
Sbjct: 126 AKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSLLTRLAS 185
Query: 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVI 302
L +L AP L++ YD + +LD+L F V++D+P++W WT++VL+ SD++VI
Sbjct: 186 GLKLLAAPTELAKNYDLKTGAVERLLDLLRGSFDFVVVDLPNIWTDWTRQVLSGSDEIVI 245
Query: 303 TTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI 362
LA LRN+K L+D LK+LRP D P LVLN+V PK+PE SD LGI +
Sbjct: 246 VAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRPE--PSDLEEILGIESLLV 303
Query: 363 IPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSK 408
+PFD A+FG +AN+G+M+ EVDP S A L ++ L GR++ +
Sbjct: 304 LPFDPALFGDAANNGRMLSEVDPGSPAAKALAQLAQSLGGRISGER 349
>gnl|CDD|30803 COG0455, COG0455, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 262
Score = 72.2 bits (177), Expect = 2e-13
Identities = 57/263 (21%), Positives = 111/263 (42%), Gaps = 7/263 (2%)
Query: 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFD-KDPINSISDA 221
I+ + +GGVG +TI N ++A++ LL D DL G ++ + ++ D
Sbjct: 4 VIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDV 63
Query: 222 IYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILD 281
+ I+ P L +L + L D + + V+ LE+++ +++D
Sbjct: 64 LAGEASIEDIIY-ETPQD---GLYVLPGGSGLEDLAKLDPEDLEDVIKELEELYDYILID 119
Query: 282 VPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTP 341
+ T + SD++VI T+ + + ++ I +L KL +VLN+V++
Sbjct: 120 TGAGLSRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRST 179
Query: 342 K-KPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVL 400
K +++ + +IPFD V + GK I P S + + + + L
Sbjct: 180 KEGVDVAALLIQVVKQVPVLQVIPFDPEV-RRALAEGKPIVLYSPNSKASQAIKELAAKL 238
Query: 401 MGRVTVSKPQSAMYTKIKKIFNM 423
G P+ +KIK++
Sbjct: 239 AGLPEPKAPRRGFISKIKRLLKR 261
>gnl|CDD|31385 COG1192, Soj, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 259
Score = 57.9 bits (139), Expect = 5e-09
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 17/240 (7%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDP-INSISDAI 222
I+ +GGVG +T A N A ++A + LL DLD P G+ P + +
Sbjct: 5 IAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLD-PQGSLTSWLGLRPDLEGDLYNL 63
Query: 223 YPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFD------EKMIVPVLDILEQIFP 276
+ + V E L ++ + L+ + + E ++ +LD ++ +
Sbjct: 64 LSGLKERPDILDYTVVI--EGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVKDDYD 121
Query: 277 LVILDVPHVWNSWTQEVLTLSDKVVI---TTSLDLAGLRNSKNLIDVLKKLRPADKPPY- 332
+I+D P T L +D V+I LDL GL N ++ L KLR
Sbjct: 122 YIIIDTPPSLGVLTLNALAAADHVLIPVQPEFLDLEGLEQLLNTLEDLLKLRRNKLIVVG 181
Query: 333 LVLNQVKTPKKPEISISDFCAPLGITP--SAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390
+++ + + K + L P IP + +A GK ++E DPKS A
Sbjct: 182 ILITRFDSRTKLADEVLQELKQLLGDPVLKTKIPRR-VAYREAAAEGKPLYEYDPKSKAA 240
>gnl|CDD|73340 cd03111, CpaE_like, This protein family consists of proteins
similar to the cpaE protein of the Caulobacter pilus
assembly and the orf4 protein of Actinobacillus pilus
formation gene cluster. The function of these proteins
are unkown. The Caulobacter pilus assembly contains 7
genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF.
These genes are clustered together on chromosome..
Length = 106
Score = 53.0 bits (127), Expect = 2e-07
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFD 211
I+FIG++GGVG++T+A N A ++A LL DLDL +G + D
Sbjct: 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGDDYVVVD 49
Score = 46.4 bits (110), Expect = 2e-05
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 276 PLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADK-PPYLV 334
V++D+ + + L +D+V + T DL +RN+K L+++L+ L + LV
Sbjct: 44 DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELV 103
Query: 335 LNQ 337
LN+
Sbjct: 104 LNR 106
>gnl|CDD|32719 COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell
division and chromosome partitioning].
Length = 272
Score = 51.0 bits (122), Expect = 7e-07
Identities = 62/277 (22%), Positives = 118/277 (42%), Gaps = 42/277 (15%)
Query: 170 RGGVGSSTIAHNCAFSIAS------VFAMETLLADLDLPYGTAN-INFDKDPINSISDAI 222
+GGVG +T N ++A + + L +LDL G N I +D + D I
Sbjct: 11 KGGVGKTTTTANIGTALAQLGKKVVLIDFDIGLRNLDLIMGLENRIVYD------LVDVI 64
Query: 223 YPVGRIDKAFVS--RLPVFYAENLSILTAPAMLSRTYDFD----EKMIVPVLDILEQIFP 276
+++A + RL ENL +L A S+T D D E + V ++ F
Sbjct: 65 EGEATLNQALIKDKRL-----ENLFLLPA----SQTRDKDALTPEGVKKVVNELKAMDFD 115
Query: 277 LVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL-----KKLRPADKPP 331
+I+D P + + +D+ ++ T+ +++ +R+S +I +L + +
Sbjct: 116 YIIIDSPAGIEQGFKNAVYFADEAIVVTNPEVSSVRDSDRIIGLLESKSRRAEIGEEPKE 175
Query: 332 YLVLNQVKT---PKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSA 388
+L+LN+ + + +S+ D L I +IP D V ++N G+ + +D S
Sbjct: 176 HLLLNRYRPEMVKRGEMLSVEDVLEILSIPLIGVIPEDQDVL-RASNKGEPV-ILDDNSD 233
Query: 389 IANLLVDFSRVLMGR----VTVSKPQSAMYTKIKKIF 421
D +R L+G + + + ++K F
Sbjct: 234 AGKAYRDIARRLLGEEVPFRFLEEEKKGFLARLKGGF 270
>gnl|CDD|73299 cd02036, MinD, Bacterial cell division requires the formation of a
septum at mid-cell. The site is determined by the min
operon products MinC, MinD and MinE. MinC is a
nonspecific inhibitor of the septum protein FtsZ. MinE
is the supressor of MinC. MinD plays a pivotal role,
selecting the mid-cell over other sites through the
activation and regulation of MinC and MinE. MinD is a
membrane-associated ATPase, related to nitrogenase iron
protein. More distantly related proteins include
flagellar biosynthesis proteins and ParA chromosome
partitioning proteins. MinD is a monomer..
Length = 179
Score = 40.5 bits (95), Expect = 0.001
Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 56/229 (24%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIY 223
I +GGVG +T N T LA L Y I+ D
Sbjct: 2 IVVTSGKGGVGKTTTTANLG----------TALAQLG--YKVVLIDAD------------ 37
Query: 224 PVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVP 283
NL ++ + +++ + D+L +++D P
Sbjct: 38 ---------------LGLRNLDLIL---------GLENRVVYTLHDVLAG--DYILIDSP 71
Query: 284 HVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK 343
+ +D+ ++ T+ +++ LR++ + +L+ L K +++N+V P
Sbjct: 72 AGIERGFITAIAPADEALLVTTPEISSLRDADRVKGLLEAL--GIKVVGVIVNRV-RPDM 128
Query: 344 PEIS--ISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIA 390
E + D LG+ +IP D AV + N G+ + PKS A
Sbjct: 129 VEGGDMVEDIEEILGVPLLGVIPEDPAVI-RATNRGEPVVLNKPKSPAA 176
>gnl|CDD|30835 COG0489, Mrp, ATPases involved in chromosome partitioning [Cell
division and chromosome partitioning].
Length = 265
Score = 38.9 bits (90), Expect = 0.003
Identities = 46/208 (22%), Positives = 87/208 (41%), Gaps = 14/208 (6%)
Query: 125 ISNHVSEYLIEPLSVADIINSISAIFTP---QEEGKGSSGCSISFIGSRGGVGSSTIAHN 181
I +++ L L + ++ A+ T + + I+ +GGVG ST+A N
Sbjct: 18 IPELLAKALAALLPKSTASEALRALRTNLKFAKVLRKGVKNVIAVTSGKGGVGKSTVAVN 77
Query: 182 CAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241
A ++A + LL D DL + + + +++ + +A +
Sbjct: 78 LAAALAQL-GKRVLLLDADLRGPSIPRMLGLENLPGLTELL-----AGEALEPVIQHDGI 131
Query: 242 ENLSILTA--PAMLSRTYDFDEKMIVPVL-DILEQIFPLVILDVPHVW-NSWTQEVLTLS 297
+ LSIL ++ R K ++ +L D+L + VI+D P ++ + +
Sbjct: 132 KVLSILPLGPVPVIPRGL-LGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQRIP 190
Query: 298 DKVVITTSLDLAGLRNSKNLIDVLKKLR 325
D VVI T+ L + K ID+L+K
Sbjct: 191 DGVVIVTTPGKTALEDVKKAIDMLEKAG 218
>gnl|CDD|31343 COG1149, COG1149, MinD superfamily P-loop ATPase containing an
inserted ferredoxin domain [Energy production and
conversion].
Length = 284
Score = 36.4 bits (84), Expect = 0.016
Identities = 28/130 (21%), Positives = 53/130 (40%), Gaps = 9/130 (6%)
Query: 262 KMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVL 321
K++ + +++ L+I+D L +D ++ T GL + K ++++
Sbjct: 151 KLVTALKKHAKELADLLIIDSAAGTGCPVIASLKGADLAILVTEPTPFGLHDLKRALELV 210
Query: 322 KKLRPADKPPYLVLNQVKTPKKPEIS-ISDFCAPLGITPSAIIPFDGAVFGMSANSGKMI 380
+ P +V+N+ S I ++C GI IP+D + N G+
Sbjct: 211 EHFG---IPTGIVINR----YNLGDSEIEEYCEEEGIPILGEIPYDKDIPEAYVN-GEPF 262
Query: 381 HEVDPKSAIA 390
E D K A A
Sbjct: 263 VEPDSKEAEA 272
Score = 29.1 bits (65), Expect = 2.5
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLD 200
++ +GG G +T+A N A + + + +LAD D
Sbjct: 4 VAVASGKGGTGKTTVAANLAVLLGDKY--KLVLADCD 38
>gnl|CDD|73301 cd02038, FleN-like, FleN is a member of the Fer4_NifH superfamily.
It shares the common function as an ATPase, with the
ATP-binding domain at the N-terminus. In Pseudomonas
aeruginosa, FleN gene is involved in regulating the
number of flagella and chemotactic motility by
influencing FleQ activity..
Length = 139
Score = 35.5 bits (82), Expect = 0.028
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFD 211
I+ +GGVG + I+ N A ++A + LL D DL G AN+++D
Sbjct: 2 IAVTSGKGGVGKTNISANLALALAKL-GKRVLLLDADL--GLANLDYD 46
>gnl|CDD|34367 COG4753, COG4753, Response regulator containing CheY-like receiver
domain and AraC-type DNA-binding domain [Signal
transduction mechanisms].
Length = 475
Score = 35.3 bits (81), Expect = 0.031
Identities = 17/95 (17%), Positives = 43/95 (45%), Gaps = 2/95 (2%)
Query: 67 EAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALIS 126
EA+ ++ PD++I + + L ++ + E T+ I++ ++ + +
Sbjct: 39 EALELIQETQ-PDIVITDINMPGMDGLDLIKAIKEQ-SPDTEFIILSGYDEFEYAKKAMK 96
Query: 127 NHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSG 161
V +YL++P+ A++ ++ I EE +
Sbjct: 97 LGVKDYLLKPVDKAELEEALKKIIGKLEEQQKVKQ 131
>gnl|CDD|145019 pfam01656, CbiA, CobQ/CobB/MinD/ParA nucleotide binding domain.
This family consists of various cobyrinic acid
a,c-diamide synthases. These include CbiA and CbiP from
S.typhimurium, and CobQ from R. capsulatus. These
amidases catalyse amidations to various side chains of
hydrogenobyrinic acid or cobyrinic acid a,c-diamide in
the biosynthesis of cobalamin (vitamin B12) from
uroporphyrinogen III. Vitamin B12 is an important
cofactor and an essential nutrient for many plants and
animals and is primarily produced by bacteria. The
family also contains dethiobiotin synthetases as well as
the plasmid partitioning proteins of the MinD/ParA
family.
Length = 212
Score = 35.1 bits (81), Expect = 0.041
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 15/185 (8%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIY 223
I+ G++GGVG +T+A N A ++A LL DLD + + D +
Sbjct: 1 IAIAGTKGGVGKTTLAANLARALAK-RGYRVLLIDLDPQANLTSSLGKG---PDLIDVLK 56
Query: 224 PVGRIDKAFVSR------LPVFYAENLSILTAPAMLSRT-YDFDEKMIVPVLDILEQIFP 276
I A + +P + L L P+ LS ++ + + +++ +
Sbjct: 57 EGLEIVDAQPLQHIAAAIVPSRNLDPL--LLIPSNLSLANFESELILEGGEEGLIKLAYD 114
Query: 277 LVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLN 336
VI+D T L +D +V+ + + ++ L++++++L K +VLN
Sbjct: 115 YVIIDGAPGLGELTANALVAADILVVPIEPEGVAVLGAQRLLELVERLG--LKILGVVLN 172
Query: 337 QVKTP 341
+V
Sbjct: 173 KVDRG 177
>gnl|CDD|73302 cd02042, ParA, ParA and ParB of Caulobacter crescentus belong to a
conserved family of bacterial proteins implicated in
chromosome segregation. ParB binds to DNA sequences
adjacent to the origin of replication and localizes to
opposite cell poles shortly following the initiation of
DNA replication. ParB regulates the ParA ATPase activity
by promoting nucleotide exchange in a fashion
reminiscent of the exchange factors of eukaryotic G
proteins. ADP-bound ParA binds single-stranded DNA,
whereas the ATP-bound form dissociates ParB from its DNA
binding sites. Increasing the fraction of ParA-ADP in
the cell inhibits cell division, suggesting that this
simple nucleotide switch may regulate cytokinesis. ParA
shares sequence similarity to a conserved and widespread
family of ATPases which includes the repA protein of the
repABC operon in R. etli Sym plasmid. This operon is
involved in the plasmid replication and partition..
Length = 104
Score = 34.1 bits (78), Expect = 0.080
Identities = 18/75 (24%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
Query: 265 VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVI---TTSLDLAGLRNSKNLIDVL 321
V ++D+ Q + +I+D P T+ L +D V+I + LDL GL + +
Sbjct: 31 VLLIDLDPQ-YDYIIIDTPPSLGLLTRNALAAADLVLIPVQPSPLDLDGLEKLLETLILE 89
Query: 322 KKLRPADKPPYLVLN 336
+L P ++
Sbjct: 90 DRLNPDLDILGILPT 104
Score = 31.0 bits (70), Expect = 0.61
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPY 203
I+ +GGVG +T A N A ++A LL DLD Y
Sbjct: 2 IAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQY 40
>gnl|CDD|31832 COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel
fold [General function prediction only].
Length = 240
Score = 31.0 bits (70), Expect = 0.63
Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 6/74 (8%)
Query: 85 TKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVS------LYRALISNHVSEYLIEPLS 138
T +D + A E ++GT I+IG ++ V+ + A+ ++ P S
Sbjct: 20 TLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGS 79
Query: 139 VADIINSISAIFTP 152
+ I A+F P
Sbjct: 80 PSGISPYADAVFFP 93
>gnl|CDD|32386 COG2204, AtoC, Response regulator containing CheY-like receiver,
AAA-type ATPase, and DNA-binding domains [Signal
transduction mechanisms].
Length = 464
Score = 30.3 bits (68), Expect = 0.99
Identities = 16/87 (18%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 60 ITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVS 119
+T S EA+ S DL+++ ++ + L L+ + D VIV+ D+
Sbjct: 32 VTAESAEEAL-EALSESPFDLVLLDIRMPGMDGLELLKEIKSR-DPDLPVIVMTGHGDID 89
Query: 120 LYRALISNHVSEYLIEPLSVADIINSI 146
+ ++L +P + ++ +
Sbjct: 90 TAVEALRLGAFDFLEKPFDLDRLLAIV 116
>gnl|CDD|73339 cd03110, Fer4_NifH_child, This protein family's function is unkown.
It contains nucleotide binding site. It uses NTP as
energy source to transfer electron or ion..
Length = 179
Score = 30.2 bits (68), Expect = 1.1
Identities = 16/73 (21%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 292 EVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDF 351
LT +D ++ T +GL + + +++++ P +V+N+ + I D+
Sbjct: 110 ASLTGADAALLVTEPTPSGLHDLERAVELVRHFG---IPVGVVINKYDLNDEIAEEIEDY 166
Query: 352 CAPLGITPSAIIP 364
C GI IP
Sbjct: 167 CEEEGIPILGKIP 179
>gnl|CDD|34203 COG4565, CitB, Response regulator of citrate/malate metabolism
[Transcription / Signal transduction mechanisms].
Length = 224
Score = 29.8 bits (67), Expect = 1.3
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 19/101 (18%)
Query: 50 DPRMSQVNMRI-----------TRGSIAEAVSCFSDSSTPDLIIVQ---TKVDSREVLSA 95
DP +++++ R T G++ EA + PDLI++ + E+L
Sbjct: 9 DPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEFK-PDLILLDIYMPDGNGIELLPE 67
Query: 96 LEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEP 136
L D VIVI +D+ + + V +YLI+P
Sbjct: 68 LRSQHYPVD----VIVITAASDMETIKEALRYGVVDYLIKP 104
>gnl|CDD|33502 COG3707, AmiR, Response regulator with putative antiterminator
output domain [Signal transduction mechanisms].
Length = 194
Score = 29.8 bits (67), Expect = 1.6
Identities = 15/70 (21%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Query: 74 DSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYL 133
+ PD++I+ ++ R+++ AL +E + ++ + +D +L A I V Y+
Sbjct: 47 ERLQPDVVILDIEMPRRDIIEALLLASE--NVARPIVALTAYSDPALIEAAIEAGVMAYI 104
Query: 134 IEPLSVADII 143
++PL + ++
Sbjct: 105 VKPLDESRLL 114
>gnl|CDD|145605 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalysed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyses the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via the
APB biosynthetic pathway.
Length = 150
Score = 29.5 bits (67), Expect = 1.7
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 66 AEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112
A S + DL+IV K + + ALE LA + T V+++
Sbjct: 55 PVATSASEELGPADLVIVAVK--AYQTAEALEDLAPLLGPNTVVLLL 99
>gnl|CDD|164554 CHL00175, minD, septum-site determining protein; Validated.
Length = 281
Score = 29.4 bits (66), Expect = 2.2
Identities = 58/286 (20%), Positives = 123/286 (43%), Gaps = 27/286 (9%)
Query: 151 TPQEEGKGSSGCSISFIGS-RGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANIN 209
T +++ K ++ I I S +GGVG +T N SIA + L D D+ G N++
Sbjct: 4 TTEDKEKSATMSRIIVITSGKGGVGKTTTTANLGMSIARL-GYRVALIDADI--GLRNLD 60
Query: 210 ----FDKDPINSISDAIYPVGRIDKAFV--SRLPVFYAENLSILTAPAMLSRTYDFDEKM 263
+ + + D + R+D+A + R NLS+L R + M
Sbjct: 61 LLLGLENRVLYTAMDVLEGECRLDQALIRDKRWK-----NLSLLAISKNRQRYNVTRKNM 115
Query: 264 IVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKK 323
+ V + + + +++D P + + + + ++ T+ ++ +R++ + +L+
Sbjct: 116 NMLVDSLKNRGYDYILIDCPAGIDVGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEA 175
Query: 324 LRPADKPPYLVLNQVKT---PKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMI 380
L++N+V+ +S+ D LGI IP D V +S N G+ +
Sbjct: 176 --NGIYNVKLLVNRVRPDMIQANDMMSVRDVQEMLGIPLLGAIPEDENVI-ISTNRGEPL 232
Query: 381 HEVDPKSAIANL-LVDFSRVLMGR----VTVSKPQSAMYTKIKKIF 421
++ K ++ + + +R L+G+ + + P +++K F
Sbjct: 233 -VLNKKLTLSGIAFENAARRLVGKQDYFIDLDSPSKGPLKRLQKFF 277
>gnl|CDD|38881 KOG3677, KOG3677, KOG3677, RNA polymerase I-associated factor -
PAF67 [Translation, ribosomal structure and biogenesis,
Transcription].
Length = 525
Score = 28.9 bits (64), Expect = 2.6
Identities = 9/35 (25%), Positives = 25/35 (71%), Gaps = 1/35 (2%)
Query: 15 NEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKI 49
N+D + E++ S+ + +++ + + L+S+V++S+I
Sbjct: 171 NKDEI-ENLQSIFSNNWNIYWILNILHSLVDKSQI 204
>gnl|CDD|73254 cd01295, AdeC, Adenine deaminase (AdeC) directly deaminates adenine
to form hypoxanthine. This reaction is part of one of
the adenine salvage pathways, as well as the degradation
pathway. It is important for adenine utilization as a
purine, as well as a nitrogen source in bacteria and
archea..
Length = 422
Score = 28.6 bits (64), Expect = 3.0
Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 293 VLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLR----------PADKPPYLVLNQVKTPK 342
V+ + KV+ L +AGL + + +V ++L+ A P++ L+ + P
Sbjct: 350 VVVKNGKVLAELPLPIAGLMSDEPAEEVAEELKKLREALRELGYALDDPFMTLSFLSLPV 409
Query: 343 KPEISISD 350
PE+ I+D
Sbjct: 410 IPELKITD 417
>gnl|CDD|133256 cd00880, Era_like, Era (E. coli Ras-like protein)-like. This
family includes several distinct subfamilies (TrmE/ThdF,
FeoB, YihA (EngG), Era, and EngA/YfgK) that generally
show sequence conservation in the region between the
Walker A and B motifs (G1 and G3 box motifs), to the
exclusion of other GTPases. TrmE is ubiquitous in
bacteria and is a widespread mitochondrial protein in
eukaryotes, but is absent from archaea. The yeast member
of TrmE family, MSS1, is involved in mitochondrial
translation; bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 163
Score = 28.4 bits (64), Expect = 3.4
Identities = 32/144 (22%), Positives = 59/144 (40%), Gaps = 24/144 (16%)
Query: 262 KMIVPVLDILEQIFPLVILDVPHV---------WNSWTQEVLTLSDKVVITTSLDLAGLR 312
V + L + P+V++D P + + VL +D ++ A LR
Sbjct: 32 TDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVD---ADLR 88
Query: 313 NSKNLIDVLKKLRPADKPPYLVLNQV-KTPKKPEISISDFCA--PLGITPSAIIPFDGAV 369
+ +L+ LR KP LVLN++ P++ E + + L + +I
Sbjct: 89 ADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIA----- 143
Query: 370 FGMSANSGKMIHEVDPKSAIANLL 393
+SA +G+ I E+ + A+ L
Sbjct: 144 --VSALTGEGIDEL--REALIEAL 163
>gnl|CDD|38232 KOG3022, KOG3022, KOG3022, Predicted ATPase, nucleotide-binding
[Cell cycle control, cell division, chromosome
partitioning].
Length = 300
Score = 28.3 bits (63), Expect = 3.7
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Query: 170 RGGVGSSTIAHNCAFSIASV-FAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGR 227
+GGVG ST+ N A ++AS + L ADL P + + + ++ + PV
Sbjct: 56 KGGVGKSTVTVNLALALASEGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVVV 114
>gnl|CDD|153252 cd07990, LPLAT_LCLAT1-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
LCLAT1-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
Lysocardiolipin acyltransferase 1 (LCLAT1) or
1-acyl-sn-glycerol-3-phosphate acyltransferase and
similar proteins.
Length = 193
Score = 28.0 bits (63), Expect = 5.5
Identities = 18/35 (51%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 99 LAEVCDSGTKVIVIGDTNDVSLYRAL-ISNHVSEY 132
L E SG KV+V GD + RAL ISNH SE
Sbjct: 3 LFEWL-SGVKVVVYGDEPKLPKERALIISNHRSEV 36
>gnl|CDD|133294 cd01894, EngA1, EngA1 subfamily. This CD represents the first
GTPase domain of EngA and its orthologs, which are
composed of two adjacent GTPase domains. Since the
sequences of the two domains are more similar to each
other than to other GTPases, it is likely that an
ancient gene duplication, rather than a fusion of
evolutionarily distinct GTPases, gave rise to this
family. Although the exact function of these proteins
has not been elucidated, studies have revealed that the
E. coli EngA homolog, Der, and Neisseria gonorrhoeae
EngA are essential for cell viability. A recent report
suggests that E. coli Der functions in ribosome assembly
and stability.
Length = 157
Score = 27.4 bits (62), Expect = 8.5
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 318 IDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGI 357
++ K LR + KP LV+N+V K+ E ++F + LG
Sbjct: 95 EEIAKYLRKSKKPVILVVNKVDNIKE-EDEAAEFYS-LGF 132
>gnl|CDD|73300 cd02037, MRP-like, MRP (Multiple Resistance and pH adaptation) is a
homologue of the Fer4_NifH superfamily. Like the other
members of the superfamily, MRP contains a ATP-binding
domain at the N-termini. It is found in bacteria as a
membrane-spanning protein and functions as a Na+/H+
antiporter..
Length = 169
Score = 27.4 bits (61), Expect = 8.8
Identities = 10/19 (52%), Positives = 14/19 (73%)
Query: 170 RGGVGSSTIAHNCAFSIAS 188
+GGVG ST+A N A ++A
Sbjct: 8 KGGVGKSTVAVNLALALAK 26
>gnl|CDD|34971 COG5412, COG5412, Phage-related protein [Function unknown].
Length = 637
Score = 27.2 bits (60), Expect = 9.1
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 244 LSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVIT 303
I LS ++ + +I + +I+ QIF V + VWN+ ++ + I
Sbjct: 263 AGISVVKDSLSGIWNAIKPLIGFLFNIIAQIFQNVKSLLSGVWNNIKSVIVGAAHSAFIG 322
Query: 304 TSLDLAGLRNS 314
+ GL N
Sbjct: 323 LITKITGLVNQ 333
Database: CddA
Posted date: Feb 4, 2011 9:38 PM
Number of letters in database: 6,263,737
Number of sequences in database: 21,609
Lambda K H
0.319 0.135 0.386
Gapped
Lambda K H
0.267 0.0709 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 4,960,120
Number of extensions: 260629
Number of successful extensions: 636
Number of sequences better than 10.0: 1
Number of HSP's gapped: 631
Number of HSP's successfully gapped: 39
Length of query: 427
Length of database: 6,263,737
Length adjustment: 97
Effective length of query: 330
Effective length of database: 4,167,664
Effective search space: 1375329120
Effective search space used: 1375329120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)