HHsearch alignment for GI: 254780727 and conserved domain: COG4796
>COG4796 HofQ Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].
Probab=98.62 E-value=4.3e-07 Score=59.35 Aligned_cols=208 Identities=18% Similarity=0.138 Sum_probs=144.7
Q ss_pred EEEEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEEC
Q ss_conf 27999999998500144226121001454336443545566666666543033420377414311023773597589842
Q gi|254780727|r 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274 (474)
Q Consensus 195 QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~aL~~~g~a~iLa~ 274 (474)
T Consensus 310 n~v~~~~V~~~~tl~L~dvp~-~~q~L~l~l~~------~~~l~~~~~~--~v~~i~~~~~~~~~~~~--~~~~~~~~a~ 378 (709)
T COG4796 310 NLVLEDEVLGTLTLRLTDVPI-WPQALDLVLRS------AKGLDLRKHG--NVVRIGPSSELNKNERA--ELEATNLIAN 378 (709)
T ss_pred CEEEECCCCEEEEEECCCCCC-HHHHHHHHHHC------CCCEEECCCC--CEEEEECCCHHHHHHHH--HHHHHHHHCC
T ss_conf 414220001167752345873-56677775311------5550133688--56896054355554565--5300233316
Q ss_pred CEEEEECCCEEEEEECCCEEEEECCCCCCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEECCC----CCCCCCCCCC-
Q ss_conf 23898759467575247300000136776204689887589999989815984999861232034----4555566532-
Q gi|254780727|r 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMP- 349 (474)
Q Consensus 275 P~l~t~sgq~A~~~~G~e~pi~~~~~~~~~~~v~~~~~Gi~L~vtP~V~~~g~I~L~i~~evS~~----~~~~~~~~~P- 349 (474)
T Consensus 379 ~~~~~~~~~~~l~y~~~~~~~-~~~a~s~~~g~~~~~~--~ls~~~sv~~D~~tn~~~i~d~~~~i~~i~~~~~~~d~p~ 455 (709)
T COG4796 379 PRIRLRNKEKALIYAGAAEPF-LSLATSLTTGGVYNDV--LLSVRGSVTFDNRTNILLILDVPSIIQQIRTLVAQIDIPV 455 (709)
T ss_pred CCCCCHHHHHHHHHCCCCCCH-HHHCCCCCCCCCCCCC--CCCCCCCEEECCCCCEEEEECCHHHHHHHHHHHHHCCCCH
T ss_conf 331112344444413567620-0000003567544553--2333673556277766896073889999974201116754
Q ss_pred --EEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEECEECCCCC
Q ss_conf --16789999999985899899997665310132125711201761200016564552115999999051503468
Q gi|254780727|r 350 --SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423 (474)
Q Consensus 350 --~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~iV~p~~ 423 (474)
T Consensus 456 ~qv~i~a~ivtv~~~~~~elgv~~gl~~~~~~~-------~~~~~~l~~~~~~~~d~~~~~~~~l~~~~~~~~~~~ 524 (709)
T COG4796 456 NQVIIEARIVTVLKLSLRELGVLWGLIQTTDRE-------LGGIGALGRLFFSQGDNAVKNEIVLNITLPVTTPTV 524 (709)
T ss_pred HHEEEEEEEEEEEECCCCCCCEEEEECCCCCCC-------CCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCC
T ss_conf 560677545677523576555576311235555-------567763234543346775224421430357756665