HHsearch alignment for GI: 254780727 and conserved domain: TIGR02515

>TIGR02515 IV_pilus_PilQ type IV pilus secretin PilQ; InterPro: IPR013355 A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with the uptake of exogenous DNA, rather than with formation of a type IV pilus - the surface structure required for this may be considered an unusual, incomplete type IV pilus structure.; GO: 0009297 pilus biogenesis, 0009306 protein secretion.
Probab=100.00  E-value=0  Score=400.31  Aligned_cols=267  Identities=22%  Similarity=0.387  Sum_probs=212.6

Q ss_pred             HHC-CCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf             857-8771699983894999997199999999999999861223455555665443035543277722799999999850
Q gi|254780727|r  129 RFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR  207 (474)
Q Consensus       129 ~~~-p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~vvn~l~v~~~~QV~lev~i~EVs~  207 (474)
T Consensus       152 ~~LS~RGSvt~D~RTN~Liv~D~---~~~l~~~r~---------------------li~~lD~P-v~QV~IEARIVea~~  206 (464)
T TIGR02515       152 AVLSERGSVTVDPRTNTLIVTDI---PEKLARIRE---------------------LIAELDIP-VKQVLIEARIVEATD  206 (464)
T ss_pred             HHCCCCCCEEEECCCCEEEEEEC---HHHHHHHHH---------------------HHHHCCCC-CCCEEEEEEEEEEEC
T ss_conf             20389860897424253878621---578999999---------------------99961898-433899647999830


Q ss_pred             HHHHHCCCEEEECCCCCCCCCCC---------------CCCC-----------------CCCCCCC------CCCCEEEE
Q ss_conf             01442261210014543364435---------------4556-----------------6666666------54303342
Q gi|254780727|r  208 DILKQIGFQHSITGSSSGPSKSF---------------AADF-----------------GGKFVSE------GGDFSVKG  249 (474)
Q Consensus       208 ~~~~~lGi~w~~~~~~~~~~~~~---------------~~~~-----------------~~~~~~~------~~~~~~~~  249 (474)
T Consensus       207 ~f~r~LGv~wG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~nv~l~~~t~~~gsgGa~~~~~~~~~  286 (464)
T TIGR02515       207 SFARELGVRWGIADKTTNGNGTLGGIGSSTGTGATGVVSSTLAGGTMNPPIGDNLNVNLATATTAGGSGGAAAISFALGK  286 (464)
T ss_pred             CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             61100606723435643246531013625666121642477877654777788763466356656544245788777654


Q ss_pred             ECC-CCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCC----CCCEEEEEEEEEEEEEEEEEEEC
Q ss_conf             037-7414311023773597589842238987594675752473000001367----76204689887589999989815
Q gi|254780727|r  250 VLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLS  324 (474)
Q Consensus       250 ~~~-~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~----~~~~~v~~~~~Gi~L~vtP~V~~  324 (474)
T Consensus       287 ~~~g~~~LdLELSAle~e~~~eiissPrv~T~d~~~A~I~qG~EIPY~~~s~~G~~~~~~~~v~FKeAvL~LeVTP~ITp  366 (464)
T TIGR02515       287 LGSGGVLLDLELSALESEGKGEIISSPRVVTADNKKAKIEQGTEIPYQQTSSSGTGASSATSVEFKEAVLSLEVTPQITP  366 (464)
T ss_pred             HHCCCCHHHHHHHHHHHHCCCCEEECCEEEEECCCEEEEECCEEECEEEECCCCCCCCCEEEEEEEEEEEECCCCCEECC
T ss_conf             40454014689999986188138765818720685557731546041898066200674217999998750531311656


Q ss_pred             CCEEEEEEEEEECCCC--CCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCC
Q ss_conf             9849998612320344--55556653216789999999985899899997665310132125711201761200016564
Q gi|254780727|r  325 PGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR  402 (474)
Q Consensus       325 ~g~I~L~i~~evS~~~--~~~~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~  402 (474)
T Consensus       367 Dg~i~M~~~v~kd~~g~~~~~a~~~~~~I~k~ei~T~VlV~nGeTvViGGIY~~~~~~~~~kVPfLGDIP~lG~LFk~~~  446 (464)
T TIGR02515       367 DGRIIMDLKVSKDSPGAVVSQAGGGVPAIDKREINTQVLVKNGETVVIGGIYEQTQTNSVNKVPFLGDIPVLGNLFKKTA  446 (464)
T ss_pred             CCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCEECCCCCEEHEEECCC
T ss_conf             99389998871077875034678701504402677899972588899812898515644245511134560111011166


Q ss_pred             CCCCEEEEEEEEECEECC
Q ss_conf             552115999999051503
Q gi|254780727|r  403 FNREETEIFIAATPFLVK  420 (474)
Q Consensus       403 ~~~~~tELvI~iTP~iV~  420 (474)
T Consensus       447 ~~~~K~ELLIFiTPri~~  464 (464)
T TIGR02515       447 KSDEKSELLIFITPRIVN  464 (464)
T ss_pred             CEEECEEEEEEECCEECC
T ss_conf             311110431887565749