HHsearch alignment for GI: 254780727 and conserved domain: TIGR02519
>TIGR02519 pilus_MshL pilus (MSHA type) biogenesis protein MshL; InterPro: IPR013358 Proteins containing this region are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from the periplasm to the outside of the cell. Related proteins include the GspD type II secretion family, the YscC/HrcC family type III secretion family, and the PilQ type IV pilus formation family. These proteins are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system..
Probab=100.00 E-value=0 Score=333.09 Aligned_cols=258 Identities=25% Similarity=0.341 Sum_probs=197.5
Q ss_pred EEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEE
Q ss_conf 99838949999971999999999999998612234555556654430355432777227999999998500144226121
Q gi|254780727|r 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217 (474)
Q Consensus 138 v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w 217 (474)
T Consensus 3 iN~~~G~l~~~A~---p~~~~~V~~yl~~l~---------------------~~~~rQV~ie~~ileV~L~D~~~~GiDW 58 (311)
T TIGR02519 3 INKEAGLLTVRAT---PAQIRRVEEYLESLK---------------------ERIHRQVLIEAKILEVTLSDNYQQGIDW 58 (311)
T ss_pred CCCCCCEEEEEEC---HHHHHHHHHHHHHHH---------------------HHCCCCEEEEEEEEEEEECCCCEECCCH
T ss_conf 4777357999852---589999999999988---------------------8508638999799999857880015128
Q ss_pred EECCCCCCCCCCCCCC------CCCCCCC----------------CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECC
Q ss_conf 0014543364435455------6666666----------------65430334203774143110237735975898422
Q gi|254780727|r 218 SITGSSSGPSKSFAAD------FGGKFVS----------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275 (474)
Q Consensus 218 ~~~~~~~~~~~~~~~~------~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~aL~~~g~a~iLa~P 275 (474)
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~sg~~~l~~i~~~~~~~G~A~G~G~~i~~a~Gsf~~~v~~L~~~G~~~VLSnP 138 (311)
T TIGR02519 59 SNFNGSLLGRYKLGGAATSNDSSGNIFSSGLGFLDNISLPTTVNGAAAGLGSNISIANGSFDAIVNFLATFGDVKVLSNP 138 (311)
T ss_pred HHHHCCCCCHHCCCCCEEECCCCCCCCCCCCCCHHHCCCCCCCCEEEEECCCEEEEECCHHHHHHHHHHHCCCEEEEECC
T ss_conf 99630221010578620313557740557765510334222341244321522674035488999999962973673177
Q ss_pred EEEEECCCEEEEEECCCEEEEECCCC-------CC-CE-------EEEEEEEEEEEEEEEEEECCCEEEEEEEEEECCCC
Q ss_conf 38987594675752473000001367-------76-20-------46898875899999898159849998612320344
Q gi|254780727|r 276 TLTAISGQSASFTSGGQHLYKTVSSS-------TG-AT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340 (474)
Q Consensus 276 ~l~t~sgq~A~~~~G~e~pi~~~~~~-------~~-~~-------~v~~~~~Gi~L~vtP~V~~~g~I~L~i~~evS~~~ 340 (474)
T Consensus 139 k~~a~NnQ~A~isVG~~~~Y~~~~~~~Gss~~~~ggtt~~~~~~~~~~s~f~G~~l~VtP~I~dDg~v~L~v~P~~s~v~ 218 (311)
T TIGR02519 139 KVMALNNQPAVISVGDSITYVTEISSTGSSTTTSGGTTSTASSDVEVDSVFSGIVLGVTPQIKDDGKVILNVHPSISEVK 218 (311)
T ss_pred EEEEECCCEEEEEECCEEEEEEEEEEECCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCEEECCCEEEEEEECCEEEEE
T ss_conf 28853585789993461368987786424356888640355442357735401261420028618879999842287787
Q ss_pred CC-------------C-CCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCC
Q ss_conf 55-------------5-566532167899999999858998999976653101321257112017612000165645521
Q gi|254780727|r 341 IG-------------V-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 (474)
Q Consensus 341 ~~-------------~-~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~ 406 (474)
T Consensus 219 ~~~~Ge~~~~~~~~~~g~~~~lP~~~~Ke~ss~~~~~~G~~~vlGGLi~~~~s~~~~~~P~LgdiP~lG~LF~~~~~~~~ 298 (311)
T TIGR02519 219 PQKDGESLELIEVGNEGAEVALPEISVKEMSSVVRVKDGDTVVLGGLIDKKKSNTKSGLPLLGDIPGLGYLFSYKSKSKK 298 (311)
T ss_pred ECCCCCCCCCCCCCCCCCEECCCCEEEEEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCE
T ss_conf 30267641001357767524077023323567999517979997134236501311355531147634331277513521
Q ss_pred EEEEEEEEECEEC
Q ss_conf 1599999905150
Q gi|254780727|r 407 ETEIFIAATPFLV 419 (474)
Q Consensus 407 ~tELvI~iTP~iV 419 (474)
T Consensus 299 ~~ElVI~l~P~v~ 311 (311)
T TIGR02519 299 KTELVIILRPSVV 311 (311)
T ss_pred EEEEEEEECCEEC
T ss_conf 3689999133669