Query gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 474 No_of_seqs 232 out of 2174 Neff 7.2 Searched_HMMs 33803 Date Wed Jun 1 14:28:32 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780727.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1f1s_A Hyaluronate lyase; the 94.6 0.16 4.7E-06 26.7 6.9 66 46-118 11-76 (78) 2 >2ksm_A Uncharacterized protei 88.3 1.3 4E-05 21.3 6.8 67 116-193 59-125 (131) 3 >3ec1_A YQEH GTPase; atnos1, a 51.8 6.6 0.0002 17.3 1.4 25 358-382 15-39 (135) 4 >3h2y_A GTPase family protein; 50.9 7 0.00021 17.2 1.4 24 358-381 16-39 (136) 5 >1b35_D CRPV, protein (cricket 49.4 5.9 0.00017 17.6 0.8 23 381-403 21-43 (57) 6 >2bbk_H Methylamine dehydrogen 43.1 18 0.00052 14.9 4.3 37 75-111 50-87 (104) 7 >1toa_A Tromp-1, protein (peri 40.0 7.7 0.00023 16.9 0.2 33 1-33 3-35 (195) 8 >2woz_A Kelch repeat and BTB d 36.4 20 0.00059 14.6 1.9 25 358-382 5-29 (52) 9 >3gld_A Pilin; all-beta, cell 29.2 30 0.00088 13.6 3.3 20 357-376 60-79 (136) 10 >2voz_A FUTA2, periplasmic iro 27.6 15 0.00043 15.3 -0.0 23 196-218 126-148 (346) 11 >2vx5_A Cellvibrio japonicus m 26.1 21 0.00062 14.4 0.6 28 1-28 1-28 (396) 12 >2nvp_A Hypothetical protein; 24.9 2.4 7E-05 19.9 -4.5 45 357-401 1-50 (155) 13 >1ghh_A DINI, DNA-damage-induc 20.1 45 0.0013 12.5 6.4 46 120-167 22-70 (81) No 1 >>1f1s_A Hyaluronate lyase; the structure consists of three distinct structural domains: two beta domains at two terminals and one alpha domain in the middle of the sequence.; 2.10A {Streptococcus agalactiae} (A:1-78) Probab=94.59 E-value=0.16 Score=26.72 Aligned_cols=66 Identities=17% Similarity=0.295 Sum_probs=54.3 Q ss_pred CCCEEEEEECCEEEEECCCCHHHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCC Q ss_conf 5402799507259995377633078537343799971698799995267227999988999778999873045 Q gi|254780727|r 46 KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 (474) Q Consensus 46 ~~~~l~l~~g~s~~l~~~~~~~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~v~~ 118 (474) --..++++.|+-.++..+. ...-|.|+.||.+. .=.|...+.|.|++.+.+.+|+.+..+-+.|.. T Consensus 11 lE~~I~l~l~K~yv~~~~d--Y~Y~i~n~sia~ve-----nG~i~Plk~G~T~v~V~dk~Gk~i~~ipL~Vt~ 76 (78) T 1f1s_A 11 IEKSVNTALNKNYVFNKAD--YQYTLTNPSLGKIV-----GGILYPNATGSTTVKISDKSGKIIKEVPLSVTA 76 (78) T ss_dssp CCSCEEEETTSCEECSSTT--SEEEESSGGGEEEE-----TTEEEECSCEEEEEEEECTTCCEEEEEEEEEEC T ss_pred HHHHEECCCCCEEEECCCC--EEEEECCCCEEEEE-----CCEEEECCCCEEEEEEECCCCCEEEEEEEEECC T ss_conf 3441323447656632674--27997387506775-----537861368807999984799689999768616 No 2 >>2ksm_A Uncharacterized protein RV0899/MT0922; membrane protein, BON domain, cell membrane, membrane, transmembrane; NMR {Mycobacterium tuberculosis} (A:) Probab=88.30 E-value=1.3 Score=21.34 Aligned_cols=67 Identities=15% Similarity=0.243 Sum_probs=54.2 Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCC Q ss_conf 045414789999985787716999838949999971999999999999998612234555556654430355432777 Q gi|254780727|r 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193 (474) Q Consensus 116 v~~d~~~l~~~l~~~~p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~vvn~l~v~~~ 193 (474) ..-|.+..+-...+-.|-.+.......+++.|+|++.++.+.+.+.+-|...-++ -+++|++.|.++ T Consensus 59 raldfsnaepvfta~~~ipdf~lkverdtvtltgta~s~dqkdav~~aats~wp~-----------vki~nnievkg~ 125 (131) T 2ksm_A 59 RSLDFSSAEPVFTASVPIPDFGLKVERDTVTLTGTAPSSEHKDAVKRAATSTWPD-----------MKIVNNIEVTGQ 125 (131) T ss_dssp CCCCGGGHHHHHHHTTTCTTEEEEECSSEEEEEECCSSSTHHHHHHHHHHHHCSS-----------SEEEECCCCSSS T ss_pred EEECCCCCCCEEECCCCCCCCEEEEEEEEEEEECCCCCCCHHHHHHHHHHCCCCC-----------CEEEEEEEEECC T ss_conf 5401466771254477578835688740588851568930567887765246888-----------457776788467 No 3 >>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} (A:235-369) Probab=51.85 E-value=6.6 Score=17.34 Aligned_cols=25 Identities=24% Similarity=0.313 Sum_probs=20.4 Q ss_pred EEEEECCCCEEEEEEEEEEEECCCC Q ss_conf 9999858998999976653101321 Q gi|254780727|r 358 TTVELPSGGTIVLAGLLKDDIQQLK 382 (474) Q Consensus 358 T~V~l~~Get~vIgGL~~~~~~~~~ 382 (474) .+..|++|||+.||||.+-+.-+.. T Consensus 15 ~t~~Lk~gqsl~iGGL~rid~~~~~ 39 (135) T 3ec1_A 15 RVYQLNEGQTLFFGGLARLDYIKGG 39 (135) T ss_dssp EEEEECTTEEEEETTTEEEEEEESS T ss_pred EEEEECCCCEEEECCEEEEEECCCC T ss_conf 5999769947997227999845899 No 4 >>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} (A:233-368) Probab=50.90 E-value=7 Score=17.20 Aligned_cols=24 Identities=21% Similarity=0.247 Sum_probs=18.5 Q ss_pred EEEEECCCCEEEEEEEEEEEECCC Q ss_conf 999985899899997665310132 Q gi|254780727|r 358 TTVELPSGGTIVLAGLLKDDIQQL 381 (474) Q Consensus 358 T~V~l~~Get~vIgGL~~~~~~~~ 381 (474) -+..|++|||+.||||.+-+.-+. T Consensus 16 ~t~~lk~gqsl~iGGL~rid~~~~ 39 (136) T 3h2y_A 16 XVFQLNEEQTLFFSGLARFDYVSG 39 (136) T ss_dssp EEEEECTTEEEEETTTEEEEEEES T ss_pred EEEEECCCCEEEECCEEEEEEECC T ss_conf 499977996799722799985338 No 5 >>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} (D:) Probab=49.44 E-value=5.9 Score=17.63 Aligned_cols=23 Identities=39% Similarity=0.869 Sum_probs=16.7 Q ss_pred CCCCCCCEECCCCEEECCCCCCC Q ss_conf 21257112017612000165645 Q gi|254780727|r 381 LKEGIPLLSKIPILGALFRNSRF 403 (474) Q Consensus 381 ~~~~vP~LgdIPilG~LF~s~~~ 403 (474) -..|+--++.||+||+.|..-.. T Consensus 21 iseglst~s~ipilgn~fs~paw 43 (57) T 1b35_D 21 ISEGLTTLSHIPVLGNIFSTPAW 43 (57) T ss_dssp CGGGCCCTTCCCCSCCSSSSCTT T ss_pred HHHHHHHHHCCCCCCCCCCCHHH T ss_conf 64413332236400121365499 No 6 >>2bbk_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 1.75A {Paracoccus denitrificans} (H:1-49,H:301-355) Probab=43.09 E-value=18 Score=14.88 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=25.5 Q ss_pred CEEEEEECCCCEEEEEECCCCEEEEEEECC-CCCEEEE Q ss_conf 437999716987999952672279999889-9977899 Q gi|254780727|r 75 TKADVVVHSPRTMYLFGKNVGQANVILIGH-DGKQMLN 111 (474) Q Consensus 75 ~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~-~g~~~~~ 111 (474) +|-.+.|-.+..=++||...|...|.++|+ .|++... T Consensus 50 ~IDSI~VSqDdkPlLYalsag~~~L~v~DA~tGK~~~~ 87 (104) T 2bbk_H 50 EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 87 (104) T ss_dssp EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE T ss_pred CEEEEEECCCCCEEEEEEECCCCEEEEEECCCCCEEEE T ss_conf 74489998999979999978999899999999989999 No 7 >>1toa_A Tromp-1, protein (periplasmic binding protein TROA); zinc binding protein, ABC transporter; 1.80A {Treponema pallidum} (A:1-195) Probab=40.04 E-value=7.7 Score=16.95 Aligned_cols=33 Identities=3% Similarity=-0.063 Sum_probs=20.5 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC Q ss_conf 933578999999999998545411465455434 Q gi|254780727|r 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEAN 33 (474) Q Consensus 1 ~~~~~r~~~~~~~~~L~~~~~~~a~~~~~~~~~ 33 (474) |++|++.+..++++++++++.....+....... T Consensus 3 m~~mk~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (195) T 1toa_A 3 YHHHHHHDYDIPTTENLYFQGAMGSFGSKDAAA 35 (195) T ss_dssp --------------------------------- T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCC T ss_conf 544454335773169999999975447853000 No 8 >>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} (A:46-97) Probab=36.37 E-value=20 Score=14.57 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=19.2 Q ss_pred EEEEECCCCEEEEEEEEEEEECCCC Q ss_conf 9999858998999976653101321 Q gi|254780727|r 358 TTVELPSGGTIVLAGLLKDDIQQLK 382 (474) Q Consensus 358 T~V~l~~Get~vIgGL~~~~~~~~~ 382 (474) ..+.-+..|.+|+|||.-+++++.. T Consensus 5 ~Slvtk~NqifV~GGL~~dEenKd~ 29 (52) T 2woz_A 5 SSIVTQQNQVYVVGGLYVDEENKDQ 29 (52) T ss_dssp EEEECSSSCEEEEESSCC------- T ss_pred EEEEEECCEEEEEECCCCCCCCCCC T ss_conf 8999989989999684468899986 No 9 >>3gld_A Pilin; all-beta, cell adhesion, structural protein, isopeptide, cell WALL, fimbrium, isopeptide bond, membrane; 2.03A {Streptococcus pyogenes serotype M1} PDB: 3b2m_A 3gle_A (A:160-295) Probab=29.17 E-value=30 Score=13.55 Aligned_cols=20 Identities=20% Similarity=0.172 Sum_probs=15.9 Q ss_pred EEEEEECCCCEEEEEEEEEE Q ss_conf 99999858998999976653 Q gi|254780727|r 357 DTTVELPSGGTIVLAGLLKD 376 (474) Q Consensus 357 ~T~V~l~~Get~vIgGL~~~ 376 (474) ..++.|++||+++|-||-.. T Consensus 60 ~~tf~Lk~gesi~i~~LP~g 79 (136) T 3gld_A 60 LYHFTLKDGESIKVTNLPVG 79 (136) T ss_dssp CEEEEECTTCEEEEEEEETT T ss_pred CEEEEECCCCEEEEECCCCE T ss_conf 16999658966999368860 No 10 >>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* (A:) Probab=27.63 E-value=15 Score=15.34 Aligned_cols=23 Identities=13% Similarity=0.150 Sum_probs=17.1 Q ss_pred EEEEEEEEEEECHHHHHCCCEEE Q ss_conf 79999999985001442261210 Q gi|254780727|r 196 VTLKVTIAEVRRDILKQIGFQHS 218 (474) Q Consensus 196 V~lev~i~EVs~~~~~~lGi~w~ 218 (474) .......+=.+++..++.|+... T Consensus 126 ~~~~~~~l~Ynkd~~~~~g~~~~ 148 (346) T 2voz_A 126 FTQRARVLYYSRDRVNPADLSTY 148 (346) T ss_dssp EEEEEEEEEEETTTCCGGGCCCS T ss_pred EEECCEEEEECCCCCCCCCCCHH T ss_conf 00022146620111356786314 No 11 >>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* (A:) Probab=26.14 E-value=21 Score=14.41 Aligned_cols=28 Identities=11% Similarity=-0.040 Sum_probs=19.8 Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCC Q ss_conf 9335789999999999985454114654 Q gi|254780727|r 1 MRYLQRTFFTMMSIFLFSSNPSVAKLPP 28 (474) Q Consensus 1 ~~~~~r~~~~~~~~~L~~~~~~~a~~~~ 28 (474) |+.+|+++..+++++++++......... T Consensus 1 M~~~k~~~~~~~~~~~~~~~~~~~~~~~ 28 (396) T 2vx5_A 1 MSEKPAESAAAVADSATTTAPQSGKPET 28 (396) T ss_dssp ---------------------------- T ss_pred CCCCHHHHHHHHHHCCCCCCCCCCCCCC T ss_conf 9966256677776034434677899988 No 12 >>2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} (A:41-195) Probab=24.88 E-value=2.4 Score=19.93 Aligned_cols=45 Identities=36% Similarity=0.642 Sum_probs=35.2 Q ss_pred EEEEEECCCCEEEEEE-----EEEEEECCCCCCCCCEECCCCEEECCCCC Q ss_conf 9999985899899997-----66531013212571120176120001656 Q gi|254780727|r 357 DTTVELPSGGTIVLAG-----LLKDDIQQLKEGIPLLSKIPILGALFRNS 401 (474) Q Consensus 357 ~T~V~l~~Get~vIgG-----L~~~~~~~~~~~vP~LgdIPilG~LF~s~ 401 (474) +|+|...+|+||||-| -++++..+-..-+|++.+-|-|..|++.- T Consensus 1 DTTv~~~~~~tFViTGDI~AMWLRDSa~Ql~pYl~l~~~d~~L~~li~G~ 50 (155) T 2nvp_A 1 DTTVEVSEGDAFVITGDIPAXWLRDSTSQVEHYLPFVKEYPELKAIFTGL 50 (155) T ss_dssp HHTEEEETTEEEECCSSSCSEEHHHHHHHHHTTGGGTTTCGGGHHHHHHH T ss_pred HHCEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH T ss_conf 31054379985899378317887603988877698862498999999999 No 13 >>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} (A:) Probab=20.13 E-value=45 Score=12.53 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHCCCC--CEEEEEEC-CEEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 147899999857877--16999838-9499999719999999999999986 Q gi|254780727|r 120 IAHLEMTLRRFIADS--NIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETF 167 (474) Q Consensus 120 ~~~l~~~l~~~~p~~--~i~v~~~~-~~vvl~G~v~~~~~~~~~~~ia~~~ 167 (474) ..+|.+.|+..||+. +|+|.... +.+-++|. +..+.+++.++.+.- T Consensus 22 ~~EL~kRi~~~yPd~~~~v~Vr~~s~n~lsv~g~--~k~dKe~i~eiLqE~ 70 (81) T 1ghh_A 22 AGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGA--TKEDKQRISEILQET 70 (81) T ss_dssp HHHHHHHHHHHCSSSCCEEEEEEESSCEEEEESC--CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCC--CHHHHHHHHHHHHHH T ss_conf 9999999987688864435552234577456677--787899999999999 Done!