Query         gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 474
No_of_seqs    232 out of 2174
Neff          7.2 
Searched_HMMs 13730
Date          Wed Jun  1 07:19:58 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780727.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 d1f1sa2 b.1.18.2 (A:171-248) H  93.8    0.12 8.6E-06   25.2   6.9   67   45-118    10-76  (78)
  2 d1ghha_ d.57.1.1 (A:) DNA dama  27.5      13 0.00094   13.4   6.4   46  120-167    22-70  (81)
  3 d1f00i2 b.1.14.1 (I:753-841) I  24.8      15  0.0011   13.1   4.4   46   67-116    41-86  (89)
  4 d2nvpa1 a.102.1.8 (A:2-427) Hy   9.4     5.7 0.00042   15.4  -3.8   15  384-398   301-315 (426)
  5 d2gycb1 b.43.3.2 (B:1-209) Rib   5.6      62  0.0045    9.4   1.6   26   89-116     4-29  (209)
  6 d1k6da_ c.124.1.2 (A:) Acetate   5.5      62  0.0045    9.4   0.8   27  141-167    17-43  (219)
  7 d1poia_ c.124.1.2 (A:) Glutaco   5.1      68  0.0049    9.2   0.7   20  257-276    83-102 (317)
  8 d1wkya1 b.18.1.31 (A:340-490)    4.9      72  0.0052    9.1   1.9   35  378-412   111-145 (151)
  9 d1ygya1 c.2.1.4 (A:99-282) Pho   4.8      74  0.0054    9.0   0.8   13  256-268   141-153 (184)
 10 d1qupa2 d.58.17.1 (A:2-73) Cop   4.5      80  0.0058    8.8   2.7   44  120-163    20-63  (72)

No 1  
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}
Probab=93.80  E-value=0.12  Score=25.20  Aligned_cols=67  Identities=16%  Similarity=0.299  Sum_probs=54.4

Q ss_pred             CCCCEEEEEECCEEEEECCCCHHHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCC
Q ss_conf             65402799507259995377633078537343799971698799995267227999988999778999873045
Q gi|254780727|r   45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER  118 (474)
Q Consensus        45 ~~~~~l~l~~g~s~~l~~~~~~~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~v~~  118 (474)
                      +-.+.+++++|+-.++...+  ....|-||.|+.+.    +. ++...+.|.|++.+.|.+|+.+..+-+.+.+
T Consensus        10 ~lE~~i~lpL~K~yvf~~aD--Y~Y~iens~i~~V~----nG-il~Pl~eG~T~vkVsdkdGk~vk~iPl~v~a   76 (78)
T d1f1sa2          10 QIEKSVNTALNKNYVFNKAD--YQYTLTNPSLGKIV----GG-ILYPNATGSTTVKISDKSGKIIKEVPLSVTA   76 (78)
T ss_dssp             CCCSCEEEETTSCEECSSTT--SEEEESSGGGEEEE----TT-EEEECSCEEEEEEEECTTCCEEEEEEEEEEC
T ss_pred             HHHHHHCCCCCCEEEEEECC--EEEEECCCCEEEEE----CC-EEEECCCCCEEEEEECCCCCEEEEEEEEEEE
T ss_conf             57776134456102765031--58896078624663----42-5777336845899863589699997248870


No 2  
>d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]}
Probab=27.54  E-value=13  Score=13.38  Aligned_cols=46  Identities=20%  Similarity=0.317  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHCCCC--CEEEEEEC-CEEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             147899999857877--16999838-9499999719999999999999986
Q gi|254780727|r  120 IAHLEMTLRRFIADS--NIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETF  167 (474)
Q Consensus       120 ~~~l~~~l~~~~p~~--~i~v~~~~-~~vvl~G~v~~~~~~~~~~~ia~~~  167 (474)
                      ..+|.+.|+..||+.  +|+|.... +.+-++|.  +..+.+++.++.+.-
T Consensus        22 ~~EL~kRl~~~fpD~~~~v~Vr~~sa~~lsv~g~--~k~dK~~i~~iLqE~   70 (81)
T d1ghha_          22 AGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGA--TKEDKQRISEILQET   70 (81)
T ss_dssp             HHHHHHHHHHHCSSSCCEEEEEEESSCEEEEESC--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCC--CHHHHHHHHHHHHHH
T ss_conf             9999998873589975407986558896153488--741399999999999


No 3  
>d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]}
Probab=24.82  E-value=15  Score=13.09  Aligned_cols=46  Identities=17%  Similarity=0.160  Sum_probs=33.3

Q ss_pred             HHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEC
Q ss_conf             30785373437999716987999952672279999889997789998730
Q gi|254780727|r   67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI  116 (474)
Q Consensus        67 ~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~v  116 (474)
                      -.-.-+||+||.+.   .+.=.+.+++.|.+.+.+-..+|+ ...+.|.+
T Consensus        41 ~twsSsd~~VAtVd---~~~G~vta~~~G~a~Itat~~~g~-~at~tvt~   86 (89)
T d1f00i2          41 YTWRSANPAIASVD---ASSGQVTLKEKGTTTISVISSDNQ-TATYTIAT   86 (89)
T ss_dssp             EEEEESCTTTEEEC---TTTCEEEECSSSCEEEEEEETTTE-EEEEEECC
T ss_pred             EEEEECCCCEEEEE---CCCCEEEEEEEEEEEEEEEECCCC-EEEEEEEC
T ss_conf             89997999999997---898899996608999999979999-99999985


No 4  
>d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]}
Probab=9.42  E-value=5.7  Score=15.44  Aligned_cols=15  Identities=33%  Similarity=0.348  Sum_probs=11.3

Q ss_pred             CCCCEECCCCEEECC
Q ss_conf             571120176120001
Q gi|254780727|r  384 GIPLLSKIPILGALF  398 (474)
Q Consensus       384 ~vP~LgdIPilG~LF  398 (474)
                      -||-|=.+|+||..-
T Consensus       301 NvPSLLSlPylG~~~  315 (426)
T d2nvpa1         301 NVPSLLSIPYLEYKG  315 (426)
T ss_dssp             SSSCGGGHHHHTSSC
T ss_pred             CCCHHHHHHHCCCCC
T ss_conf             974476556508987


No 5  
>d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]}
Probab=5.55  E-value=62  Score=9.44  Aligned_cols=26  Identities=31%  Similarity=0.461  Sum_probs=17.2

Q ss_pred             EEECCCCEEEEEEECCCCCEEEEEEEEC
Q ss_conf             9952672279999889997789998730
Q gi|254780727|r   89 LFGKNVGQANVILIGHDGKQMLNLDILI  116 (474)
Q Consensus        89 i~gk~~G~T~l~v~~~~g~~~~~~~v~v  116 (474)
                      ++|++.|-|.+  |+.+|+.+-...+.+
T Consensus         4 lig~KiGMT~v--~~~~G~~vpVTVle~   29 (209)
T d2gycb1           4 LVGKKVGMTRI--FTEDGVSIPVTVIEV   29 (209)
T ss_dssp             CEEEEEEEEEC--CCSSSCCCEEEEEEC
T ss_pred             EEEEECCCCEE--ECCCCCEEEEEEEEE
T ss_conf             76996388368--889996998899993


No 6  
>d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]}
Probab=5.50  E-value=62  Score=9.41  Aligned_cols=27  Identities=19%  Similarity=0.084  Sum_probs=12.4

Q ss_pred             ECCEEEEEEEECCHHHHHHHHHHHHHH
Q ss_conf             389499999719999999999999986
Q gi|254780727|r  141 VSDTVVLHGMVRTIQDSQRAVELSETF  167 (474)
Q Consensus       141 ~~~~vvl~G~v~~~~~~~~~~~ia~~~  167 (474)
                      .|+.+.++|-...-....-+.+|+++.
T Consensus        17 dGd~V~~gGf~~~g~P~al~~aL~~~~   43 (219)
T d1k6da_          17 DGMTIMVGGFMGIGTPSRLVEALLESG   43 (219)
T ss_dssp             TTCEEEECCBTTBTCCHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCCCHHHHHHHHHHHC
T ss_conf             989999868267587999999999847


No 7  
>d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]}
Probab=5.15  E-value=68  Score=9.20  Aligned_cols=20  Identities=5%  Similarity=-0.105  Sum_probs=8.2

Q ss_pred             HHHHHHHHHCCCEEEEECCE
Q ss_conf             31102377359758984223
Q gi|254780727|r  257 ETVLHALERATAIRTLAEPT  276 (474)
Q Consensus       257 ~~~l~aL~~~g~a~iLa~P~  276 (474)
                      ...++-+.++|...+---|.
T Consensus        83 ~p~~~~~~~~g~ie~~~~~~  102 (317)
T d1poia_          83 SRRFRKWFEAGKLTMEDYSQ  102 (317)
T ss_dssp             CHHHHHHHHHTCSEEEECCH
T ss_pred             CHHHHHHHHCCCEEEEECCH
T ss_conf             88999986347659999345


No 8  
>d1wkya1 b.18.1.31 (A:340-490) Endo-beta-1,4-mannanase C-terminal domain {Bacillus sp. JAMB-602 [TaxId: 244966]}
Probab=4.91  E-value=72  Score=9.05  Aligned_cols=35  Identities=20%  Similarity=0.331  Sum_probs=21.0

Q ss_pred             ECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEE
Q ss_conf             01321257112017612000165645521159999
Q gi|254780727|r  378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI  412 (474)
Q Consensus       378 ~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI  412 (474)
                      -+-..++||-|+++-=||-=|+....+..++-+.+
T Consensus       111 Lsl~Ls~v~nl~~VrEiGVef~a~~nssG~taIY~  145 (151)
T d1wkya1         111 LSLDLSNVQNLSQVREIGVQFQSESNSSGQTSIYI  145 (151)
T ss_dssp             EEEECTTCSCGGGEEEEEEEEEECTTCCEEEEEEE
T ss_pred             EEEEECCCCCHHHHHEEEEEEECCCCCCCCEEEEE
T ss_conf             99981488741022000268854679988258998


No 9  
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=4.81  E-value=74  Score=8.99  Aligned_cols=13  Identities=8%  Similarity=0.056  Sum_probs=6.0

Q ss_pred             HHHHHHHHHHCCC
Q ss_conf             4311023773597
Q gi|254780727|r  256 FETVLHALERATA  268 (474)
Q Consensus       256 ~~~~l~aL~~~g~  268 (474)
                      -.+.++||++...
T Consensus       141 e~aL~~aL~~~~i  153 (184)
T d1ygya1         141 EAALADAITGGHV  153 (184)
T ss_dssp             HHHHHHHHHTSSE
T ss_pred             HHHHHHHHHCCCE
T ss_conf             4899998753937


No 10 
>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.50  E-value=80  Score=8.78  Aligned_cols=44  Identities=5%  Similarity=0.078  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCHHHHHHHHHH
Q ss_conf             14789999985787716999838949999971999999999999
Q gi|254780727|r  120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL  163 (474)
Q Consensus       120 ~~~l~~~l~~~~p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~i  163 (474)
                      ...+++.|..+-+-..+.++...+.+.+.|.++...-.+.+.++
T Consensus        20 ~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~   63 (72)
T d1qupa2          20 VNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNC   63 (72)
T ss_dssp             HHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHH
T ss_conf             99999998669980499998889999997548999999999974


Done!