Query gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 474 No_of_seqs 232 out of 2174 Neff 7.2 Searched_HMMs 13730 Date Wed Jun 1 07:19:58 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780727.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 d1f1sa2 b.1.18.2 (A:171-248) H 93.8 0.12 8.6E-06 25.2 6.9 67 45-118 10-76 (78) 2 d1ghha_ d.57.1.1 (A:) DNA dama 27.5 13 0.00094 13.4 6.4 46 120-167 22-70 (81) 3 d1f00i2 b.1.14.1 (I:753-841) I 24.8 15 0.0011 13.1 4.4 46 67-116 41-86 (89) 4 d2nvpa1 a.102.1.8 (A:2-427) Hy 9.4 5.7 0.00042 15.4 -3.8 15 384-398 301-315 (426) 5 d2gycb1 b.43.3.2 (B:1-209) Rib 5.6 62 0.0045 9.4 1.6 26 89-116 4-29 (209) 6 d1k6da_ c.124.1.2 (A:) Acetate 5.5 62 0.0045 9.4 0.8 27 141-167 17-43 (219) 7 d1poia_ c.124.1.2 (A:) Glutaco 5.1 68 0.0049 9.2 0.7 20 257-276 83-102 (317) 8 d1wkya1 b.18.1.31 (A:340-490) 4.9 72 0.0052 9.1 1.9 35 378-412 111-145 (151) 9 d1ygya1 c.2.1.4 (A:99-282) Pho 4.8 74 0.0054 9.0 0.8 13 256-268 141-153 (184) 10 d1qupa2 d.58.17.1 (A:2-73) Cop 4.5 80 0.0058 8.8 2.7 44 120-163 20-63 (72) No 1 >d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]} Probab=93.80 E-value=0.12 Score=25.20 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=54.4 Q ss_pred CCCCEEEEEECCEEEEECCCCHHHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCC Q ss_conf 65402799507259995377633078537343799971698799995267227999988999778999873045 Q gi|254780727|r 45 GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118 (474) Q Consensus 45 ~~~~~l~l~~g~s~~l~~~~~~~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~v~~ 118 (474) +-.+.+++++|+-.++...+ ....|-||.|+.+. +. ++...+.|.|++.+.|.+|+.+..+-+.+.+ T Consensus 10 ~lE~~i~lpL~K~yvf~~aD--Y~Y~iens~i~~V~----nG-il~Pl~eG~T~vkVsdkdGk~vk~iPl~v~a 76 (78) T d1f1sa2 10 QIEKSVNTALNKNYVFNKAD--YQYTLTNPSLGKIV----GG-ILYPNATGSTTVKISDKSGKIIKEVPLSVTA 76 (78) T ss_dssp CCCSCEEEETTSCEECSSTT--SEEEESSGGGEEEE----TT-EEEECSCEEEEEEEECTTCCEEEEEEEEEEC T ss_pred HHHHHHCCCCCCEEEEEECC--EEEEECCCCEEEEE----CC-EEEECCCCCEEEEEECCCCCEEEEEEEEEEE T ss_conf 57776134456102765031--58896078624663----42-5777336845899863589699997248870 No 2 >d1ghha_ d.57.1.1 (A:) DNA damage-inducible protein DinI {Escherichia coli [TaxId: 562]} Probab=27.54 E-value=13 Score=13.38 Aligned_cols=46 Identities=20% Similarity=0.317 Sum_probs=34.7 Q ss_pred HHHHHHHHHHHCCCC--CEEEEEEC-CEEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 147899999857877--16999838-9499999719999999999999986 Q gi|254780727|r 120 IAHLEMTLRRFIADS--NIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETF 167 (474) Q Consensus 120 ~~~l~~~l~~~~p~~--~i~v~~~~-~~vvl~G~v~~~~~~~~~~~ia~~~ 167 (474) ..+|.+.|+..||+. +|+|.... +.+-++|. +..+.+++.++.+.- T Consensus 22 ~~EL~kRl~~~fpD~~~~v~Vr~~sa~~lsv~g~--~k~dK~~i~~iLqE~ 70 (81) T d1ghha_ 22 AGELSRRIQYAFPDNEGHVSVRYAAANNLSVIGA--TKEDKQRISEILQET 70 (81) T ss_dssp HHHHHHHHHHHCSSSCCEEEEEEESSCEEEEESC--CHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCCCCCEECCC--CHHHHHHHHHHHHHH T ss_conf 9999998873589975407986558896153488--741399999999999 No 3 >d1f00i2 b.1.14.1 (I:753-841) Intimin {Escherichia coli [TaxId: 562]} Probab=24.82 E-value=15 Score=13.09 Aligned_cols=46 Identities=17% Similarity=0.160 Sum_probs=33.3 Q ss_pred HHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEEC Q ss_conf 30785373437999716987999952672279999889997789998730 Q gi|254780727|r 67 QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116 (474) Q Consensus 67 ~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~v 116 (474) -.-.-+||+||.+. .+.=.+.+++.|.+.+.+-..+|+ ...+.|.+ T Consensus 41 ~twsSsd~~VAtVd---~~~G~vta~~~G~a~Itat~~~g~-~at~tvt~ 86 (89) T d1f00i2 41 YTWRSANPAIASVD---ASSGQVTLKEKGTTTISVISSDNQ-TATYTIAT 86 (89) T ss_dssp EEEEESCTTTEEEC---TTTCEEEECSSSCEEEEEEETTTE-EEEEEECC T ss_pred EEEEECCCCEEEEE---CCCCEEEEEEEEEEEEEEEECCCC-EEEEEEEC T ss_conf 89997999999997---898899996608999999979999-99999985 No 4 >d2nvpa1 a.102.1.8 (A:2-427) Hypothetical protein CPF0428 {Clostridium perfringens [TaxId: 1502]} Probab=9.42 E-value=5.7 Score=15.44 Aligned_cols=15 Identities=33% Similarity=0.348 Sum_probs=11.3 Q ss_pred CCCCEECCCCEEECC Q ss_conf 571120176120001 Q gi|254780727|r 384 GIPLLSKIPILGALF 398 (474) Q Consensus 384 ~vP~LgdIPilG~LF 398 (474) -||-|=.+|+||..- T Consensus 301 NvPSLLSlPylG~~~ 315 (426) T d2nvpa1 301 NVPSLLSIPYLEYKG 315 (426) T ss_dssp SSSCGGGHHHHTSSC T ss_pred CCCHHHHHHHCCCCC T ss_conf 974476556508987 No 5 >d2gycb1 b.43.3.2 (B:1-209) Ribosomal protein L3 {Escherichia coli [TaxId: 562]} Probab=5.55 E-value=62 Score=9.44 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=17.2 Q ss_pred EEECCCCEEEEEEECCCCCEEEEEEEEC Q ss_conf 9952672279999889997789998730 Q gi|254780727|r 89 LFGKNVGQANVILIGHDGKQMLNLDILI 116 (474) Q Consensus 89 i~gk~~G~T~l~v~~~~g~~~~~~~v~v 116 (474) ++|++.|-|.+ |+.+|+.+-...+.+ T Consensus 4 lig~KiGMT~v--~~~~G~~vpVTVle~ 29 (209) T d2gycb1 4 LVGKKVGMTRI--FTEDGVSIPVTVIEV 29 (209) T ss_dssp CEEEEEEEEEC--CCSSSCCCEEEEEEC T ss_pred EEEEECCCCEE--ECCCCCEEEEEEEEE T ss_conf 76996388368--889996998899993 No 6 >d1k6da_ c.124.1.2 (A:) Acetate:CoA transferase alpha {Escherichia coli [TaxId: 562]} Probab=5.50 E-value=62 Score=9.41 Aligned_cols=27 Identities=19% Similarity=0.084 Sum_probs=12.4 Q ss_pred ECCEEEEEEEECCHHHHHHHHHHHHHH Q ss_conf 389499999719999999999999986 Q gi|254780727|r 141 VSDTVVLHGMVRTIQDSQRAVELSETF 167 (474) Q Consensus 141 ~~~~vvl~G~v~~~~~~~~~~~ia~~~ 167 (474) .|+.+.++|-...-....-+.+|+++. T Consensus 17 dGd~V~~gGf~~~g~P~al~~aL~~~~ 43 (219) T d1k6da_ 17 DGMTIMVGGFMGIGTPSRLVEALLESG 43 (219) T ss_dssp TTCEEEECCBTTBTCCHHHHHHHHHHT T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHC T ss_conf 989999868267587999999999847 No 7 >d1poia_ c.124.1.2 (A:) Glutaconate:CoA transferase alpha {Acidaminococcus fermentans [TaxId: 905]} Probab=5.15 E-value=68 Score=9.20 Aligned_cols=20 Identities=5% Similarity=-0.105 Sum_probs=8.2 Q ss_pred HHHHHHHHHCCCEEEEECCE Q ss_conf 31102377359758984223 Q gi|254780727|r 257 ETVLHALERATAIRTLAEPT 276 (474) Q Consensus 257 ~~~l~aL~~~g~a~iLa~P~ 276 (474) ...++-+.++|...+---|. T Consensus 83 ~p~~~~~~~~g~ie~~~~~~ 102 (317) T d1poia_ 83 SRRFRKWFEAGKLTMEDYSQ 102 (317) T ss_dssp CHHHHHHHHHTCSEEEECCH T ss_pred CHHHHHHHHCCCEEEEECCH T ss_conf 88999986347659999345 No 8 >d1wkya1 b.18.1.31 (A:340-490) Endo-beta-1,4-mannanase C-terminal domain {Bacillus sp. JAMB-602 [TaxId: 244966]} Probab=4.91 E-value=72 Score=9.05 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=21.0 Q ss_pred ECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEE Q ss_conf 01321257112017612000165645521159999 Q gi|254780727|r 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412 (474) Q Consensus 378 ~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI 412 (474) -+-..++||-|+++-=||-=|+....+..++-+.+ T Consensus 111 Lsl~Ls~v~nl~~VrEiGVef~a~~nssG~taIY~ 145 (151) T d1wkya1 111 LSLDLSNVQNLSQVREIGVQFQSESNSSGQTSIYI 145 (151) T ss_dssp EEEECTTCSCGGGEEEEEEEEEECTTCCEEEEEEE T ss_pred EEEEECCCCCHHHHHEEEEEEECCCCCCCCEEEEE T ss_conf 99981488741022000268854679988258998 No 9 >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Probab=4.81 E-value=74 Score=8.99 Aligned_cols=13 Identities=8% Similarity=0.056 Sum_probs=6.0 Q ss_pred HHHHHHHHHHCCC Q ss_conf 4311023773597 Q gi|254780727|r 256 FETVLHALERATA 268 (474) Q Consensus 256 ~~~~l~aL~~~g~ 268 (474) -.+.++||++... T Consensus 141 e~aL~~aL~~~~i 153 (184) T d1ygya1 141 EAALADAITGGHV 153 (184) T ss_dssp HHHHHHHHHTSSE T ss_pred HHHHHHHHHCCCE T ss_conf 4899998753937 No 10 >d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Probab=4.50 E-value=80 Score=8.78 Aligned_cols=44 Identities=5% Similarity=0.078 Sum_probs=0.0 Q ss_pred HHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCHHHHHHHHHH Q ss_conf 14789999985787716999838949999971999999999999 Q gi|254780727|r 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163 (474) Q Consensus 120 ~~~l~~~l~~~~p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~i 163 (474) ...+++.|..+-+-..+.++...+.+.+.|.++...-.+.+.++ T Consensus 20 ~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~ 63 (72) T d1qupa2 20 VNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNC 63 (72) T ss_dssp HHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHT T ss_pred HHHHHHHHHCCCCEEEEEEECCCCEEEEEEECCHHHHHHHHHHH T ss_conf 99999998669980499998889999997548999999999974 Done!