BLAST/PSIBLAST alignment of GI: 254780727 and GI: 241207157 at iteration 1
>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499
>gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%)
Query: 22 SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
S A L EA A +++ IS +++ +GLNK +++ +P D D+LVSDPT AD
Sbjct: 29 SFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 88
Query: 79 VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
V + R +YLFGK VGQ N+ + G G++++NLDI IERD++ LE+ LRRFI DSNI V
Sbjct: 89 AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIPDSNINV 148
Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181
E+VSD +VL G VRT QD+ +A +L++ FL + R + A+ + S
Sbjct: 149 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 208
Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238
+V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS S +AD
Sbjct: 209 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSAAST 268
Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
V G K + ++ T L+ALE+A ++TLAEPTLTAISGQ+A+F SGGQ LY T
Sbjct: 269 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 327
Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
+ S G +V +YG+ L F P VLS GRI L+I+T VSEPV G +G+ +Y+ R A+T
Sbjct: 328 TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 384
Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
+VELPSGG+I LAGL++D++ Q G P +SKIP+LG LFR F R+ETE+ I ATP+L
Sbjct: 385 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 444
Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
V+PVA L+RPDD++S E+D FF NRVNK+YG +EA + Q + G+IGFIYK
Sbjct: 445 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 499