BLAST/PSIBLAST alignment of GI: 254780727 and GI: 241207157 at iteration 1
>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499
>gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 499
 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 231/476 (48%), Positives = 315/476 (66%), Gaps = 28/476 (5%)

Query: 22  SVAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S A L    EA A   +++ IS       +++ +GLNK +++ +P D  D+LVSDPT AD
Sbjct: 29  SFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILVSDPTMAD 88

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ LRRFI DSNI V
Sbjct: 89  AVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFIPDSNINV 148

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFL---SQSGRNQYANSS--------------S 181
           E+VSD +VL G VRT QD+ +A +L++ FL     + R + A+ +              S
Sbjct: 149 EIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVALFAEGRQS 208

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---GPSKSFAADFGGKF 238
            +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS        S +AD     
Sbjct: 209 SQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPSADSAAST 268

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F SGGQ LY T 
Sbjct: 269 VGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGGQQLYST- 327

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G  +G+  +Y+ R A+T
Sbjct: 328 TDSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAG--SGNA-TYQRRSAET 384

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP+L
Sbjct: 385 SVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPYL 444

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           V+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 445 VRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 499