BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
         (474 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040404|gb|ACT57200.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 474

 Score =  421 bits (1081), Expect = e-115,   Method: Composition-based stats.
 Identities = 474/474 (100%), Positives = 474/474 (100%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL
Sbjct: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI
Sbjct: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS
Sbjct: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS
Sbjct: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS
Sbjct: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV
Sbjct: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK
Sbjct: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK
Sbjct: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474


>gi|15963894|ref|NP_384247.1| putative pilus assembly transmembrane protein [Sinorhizobium
           meliloti 1021]
 gi|307315791|ref|ZP_07595305.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|307320426|ref|ZP_07599843.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|15073069|emb|CAC41528.1| Pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306893992|gb|EFN24761.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|306898559|gb|EFN29232.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 511

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 209/508 (41%), Positives = 307/508 (60%), Gaps = 37/508 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           +  + +    +S  L  S  ++  LP  + A+++V+ I D   G  K I++GLNK +++ 
Sbjct: 6   KKFRASLAAGLSFCLTFSGMALPTLPAAEAASSSVVRIVDSGPGARKTINLGLNKAVVVD 65

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D  D+LV+DP+ AD +  + R +YLFGK+VGQ N+ + G  G+++++L++ +ERD+A
Sbjct: 66  LPSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVA 125

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------ 175
            LE  LRRFI D++I VE++SD VVL G VRT  DS RAV+L+  FL             
Sbjct: 126 GLEANLRRFIPDADINVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQ 185

Query: 176 ---------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                      +  + +++NLL I G+DQVTLKVT+AEV R +LKQ+GF   ++   SG 
Sbjct: 186 GNNGDADIFAEDRQNSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGI 245

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S    A+ G   ++ G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAISGQ A 
Sbjct: 246 SFRNPANLG-DAIAVGTNALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAISGQEAK 304

Query: 287 FTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           F  GG+                 +T    V   +YG+ L+F P VL PGRI L+I+T+VS
Sbjct: 305 FYVGGEFRLAGVQEVSTDDETGQTTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVS 364

Query: 338 EPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           EP              +        R R+A T+VELPSGG+IV+AGL++D+I+Q   G+P
Sbjct: 365 EPTYEGSVVTGNSMTAIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLP 424

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
             SKIPILG LFR+  F R ETE+ I ATP+LV+PVA   +SRPDD+++  +D ++FF  
Sbjct: 425 GASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLG 484

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           RVN+IYG  EA    G+ Y G +GFIYK
Sbjct: 485 RVNRIYGRPEAQPPAGR-YHGNVGFIYK 511


>gi|332560337|ref|ZP_08414659.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
 gi|332278049|gb|EGJ23364.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides WS8N]
          Length = 466

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 29  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 88

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 89  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 148

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 149 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 196

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
           +G        S                  G        G  S+   +    F+ +L ALE
Sbjct: 197 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGNPISTSGNGALSLGFSVGALEFQVLLEALE 256

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++    V+S     S+    +GV L+FTP V+ 
Sbjct: 257 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 315

Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V    +   + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 316 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 375

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 376 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 435

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 436 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 466


>gi|315121891|ref|YP_004062380.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495293|gb|ADR51892.1| putative pilus assembly protein [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 471

 Score =  370 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 330/474 (69%), Positives = 389/474 (82%), Gaps = 3/474 (0%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  Q+T F +  IF+ SSN  +A+   +   NA+ I+I D  IG  KKI+IGL KV+IL
Sbjct: 1   MKNFQKTLFMLFVIFISSSNFLLAQSKLVDAKNASTIHIGDSAIGTSKKINIGLGKVVIL 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P  VQDVLVSDPTKADVVVHS +T+Y+FGK+VGQANVILIGHD KQ+LN+DI IERDI
Sbjct: 61  HLPSRVQDVLVSDPTKADVVVHSSKTVYIFGKSVGQANVILIGHDEKQLLNIDIFIERDI 120

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +LEMT RRF++ SNI VEM+SD +VLHG VRTIQDSQ AVELS  FLS    N Y  +S
Sbjct: 121 RNLEMTFRRFLSGSNIHVEMLSDNLVLHGEVRTIQDSQHAVELSNMFLSNERNNLYKTAS 180

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             KV+NLLNI  EDQVTLKVTIAEVRRD+LKQIGFQH+I  SS GPSK    DF G    
Sbjct: 181 GSKVINLLNIGAEDQVTLKVTIAEVRRDVLKQIGFQHTI--SSGGPSKGKRIDFDGSLGG 238

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +G DF++  +LDRF+F++VL+ALERATAIRTLAEPTLTAISGQ+A+F SGG  LY++V  
Sbjct: 239 QGADFAMTTILDRFTFKSVLNALERATAIRTLAEPTLTAISGQNATFRSGGTRLYRSV-G 297

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           + G +++T HDYGVVL FTPTVLSPGRIGLRI+TEVSEPV+GV+    P YR+RKADTTV
Sbjct: 298 ANGTSTITPHDYGVVLTFTPTVLSPGRIGLRIETEVSEPVLGVSTTGEPEYRMRKADTTV 357

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ELPSGGTIVLAGLLKDDIQQ + G+PLLSKIPILGALFR++ F+REETEIFI+ATPFLVK
Sbjct: 358 ELPSGGTIVLAGLLKDDIQQKRGGVPLLSKIPILGALFRSNSFSREETEIFISATPFLVK 417

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           PVAM +LSRPDD+Y +E+DAKAF FNRVNKIYGPKEA++  GQNYKGAIGFIYK
Sbjct: 418 PVAMNELSRPDDNYDIENDAKAFLFNRVNKIYGPKEAAQGNGQNYKGAIGFIYK 471


>gi|146276361|ref|YP_001166520.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554602|gb|ABP69215.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 461

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 230/475 (48%), Gaps = 28/475 (5%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L     ++A +        +   +  +E      +++ +N+ ++++      ++ +
Sbjct: 3   MNHILRMGMAALAFMASAAPMAVSAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSI 62

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++P  AD+   S  ++Y+ GK  G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +
Sbjct: 63  ANPGIADISTLSETSIYVLGKAPGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQIL 122

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              NI V   +D +VL G V + +   RA++L+  +            +  +V NL+++ 
Sbjct: 123 PGENIEVRTANDGIVLSGTVTSAERLDRALDLANRY------------APDRVSNLMSVG 170

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------G 243
           G  QV LKV  AE++R + K +G        S                  G        G
Sbjct: 171 GTQQVMLKVRFAEMQRSVAKSLGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPITTAATG 230

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +   +    F  +L ALE    +RTLAEP LTA+SGQ A F +GG++    V+S   
Sbjct: 231 ALGLGFSVGALEFSVLLEALESKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDE 289

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTT 359
             ++    +GV L+FTP V+   +I L I   VS     V+       + +++ R+  TT
Sbjct: 290 KIAIEYKPFGVELNFTPVVVDGSQINLMINAAVSSIDNTVSLESAGFTINAFKRRETSTT 349

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VE+  G +  +AGLL+DD + L   +P L  IPILGALFR++ + R ++E+ I  TP LV
Sbjct: 350 VEMRDGESFAIAGLLQDDFRNLNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLV 409

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            P     L+ P D   +  + + F F RV    G   A EV  Q++ G+ G++ +
Sbjct: 410 TPTRGEALALPTDRIKLPSEKELFLFGRVT---GRGAAGEVARQDFSGSYGYVME 461


>gi|221638316|ref|YP_002524578.1| Type II and III secretion system protein [Rhodobacter sphaeroides
           KD131]
 gi|221159097|gb|ACM00077.1| Type II and III secretion system protein precursor [Rhodobacter
           sphaeroides KD131]
          Length = 461

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
           +G        S                  G        G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++    V+S     S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V    +   + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|126461331|ref|YP_001042445.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126102995|gb|ABN75673.1| type II and III secretion system protein [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 461

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
           +G        S                  G        G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGAPISTSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++    V+S     S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V    +   + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|77462453|ref|YP_351957.1| Outer membrane general secretion pathway protein, secretin
           [Rhodobacter sphaeroides 2.4.1]
 gi|77386871|gb|ABA78056.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacter sphaeroides 2.4.1]
          Length = 461

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 134/454 (29%), Positives = 225/454 (49%), Gaps = 28/454 (6%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA   +  +E      +++ +N+ ++++      ++ +++P  AD+   S  ++Y+ GK
Sbjct: 24  PAAAQTLRVMEGSASGALNVPMNRAVVVESDRPFAELSIANPGIADISTLSETSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G+  + L+G DG+ + N+D+ +  D+A  +  LR+ +   NI V   +D +VL G V 
Sbjct: 84  APGRTTLTLLGADGRLISNVDVHVTPDVAEFKERLRQILPGENIEVRTANDGIVLSGTVT 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +     RA++L+  +            +  +V NL+++ G  QV LKV  AE++R + K 
Sbjct: 144 STAKLDRALDLASRY------------APDRVSNLMSVGGTQQVMLKVRFAEMQRSVAKS 191

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFSFETVLHALE 264
           +G        S                  G        G  S+   +    F+ +L ALE
Sbjct: 192 LGSSIYARNGSGSVIGGTGTLLQNGIPPSGASIATSGNGALSLGFSVGALEFQVLLEALE 251

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +RTLAEP LTA+SGQ A F +GG++    V+S     S+    +GV L+FTP V+ 
Sbjct: 252 SKGVVRTLAEPNLTALSGQEAKFLAGGEYPIP-VASGDEKISIEYKPFGVELNFTPVVVD 310

Query: 325 PGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             +I L I   VS     V    +   + +++ R+  TTVE+  G +  +AGLL+DD + 
Sbjct: 311 GNQINLMINAAVSSIDNTVTLESSGFTINAFKRRETSTTVEMRDGESFAIAGLLQDDFRN 370

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           L   +P L  IPILGALFR++ + R ++E+ I  TP LV P     L+ P D   +  + 
Sbjct: 371 LNGQVPWLGDIPILGALFRSAEYQRSQSELVIIVTPHLVTPTRGEALALPTDRVKLPSEK 430

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F F RV    G   A+EV  Q++ G+ G++ +
Sbjct: 431 DLFLFGRVT---GRGAAAEVARQDFSGSYGYVME 461


>gi|255262444|ref|ZP_05341786.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
 gi|255104779|gb|EET47453.1| outer membrane general secretion pathway protein, Secretin
           [Thalassiobium sp. R2A62]
          Length = 480

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 137/478 (28%), Positives = 228/478 (47%), Gaps = 28/478 (5%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+   M   L     + + +P    A    +            +++ +N+ ++++  V  
Sbjct: 19  TYDRFMKAALMGLFVATSSVPAAVSAETLRVMRG----APSSALNVPMNRAVVVESDVPF 74

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P  AD+   S RT+Y+ GK  G+  + L+G DG+ + N+D+ +  DIA  +  
Sbjct: 75  AELSIANPGIADISTLSDRTIYVLGKLPGRTTLTLLGPDGRLITNVDVHVTPDIAEFKER 134

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L + +   NI V   +D +VL G+V +     RA++L+E +            +  +V N
Sbjct: 135 LSQILPGENIEVRTANDGIVLSGVVSSSARLTRALDLAERY------------APDRVSN 182

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKFVSEG 242
           L+++ G  QV L+V  AE++R + K +    +I G+    +           GG      
Sbjct: 183 LMSVGGTQQVMLRVRFAEMQRSVRKSLSSSVNIFGTGFSTAAGNINGVQAAGGGITTDAT 242

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G            F  +L ALE    +RTLAEP LTA+SGQ A F +GG++    V+   
Sbjct: 243 GAAFFGIDAGDIQFNVLLEALESKGVVRTLAEPNLTALSGQEAHFLAGGEYPVP-VAQEG 301

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-----DMPSYRVRKAD 357
           G T+V   D+GV L F P V+    I L ++  VS               + ++R R+  
Sbjct: 302 GTTTVEYKDFGVELTFLPVVVDQDLINLTLKASVSSIDTTNGVQVGSDFTIAAFRTRETS 361

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVE+  G +  +AGLL+DD   L   +P L  +P+LGALFR++ +NR ++E+ I  TP 
Sbjct: 362 TTVEMRDGESFAIAGLLQDDFTDLNGQVPWLGDVPVLGALFRSAEYNRSQSELVIIVTPH 421

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIY 473
           LV P     L+ P D      +   F F RV  +       A EV  Q++ G+ G++ 
Sbjct: 422 LVTPTRGEALALPTDRVRPPTERDLFLFGRVAASDAPQSGAAGEVAKQDFSGSYGYVM 479


>gi|260426909|ref|ZP_05780888.1| type II and III secretion system protein [Citreicella sp. SE45]
 gi|260421401|gb|EEX14652.1| type II and III secretion system protein [Citreicella sp. SE45]
          Length = 473

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 135/483 (27%), Positives = 236/483 (48%), Gaps = 38/483 (7%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +   L     +   L     A+    N+  V  G    +++ +N+ ++++      ++ +
Sbjct: 7   LKAALIGLALTAGPLVEGARAD----NLRVVRTGTESVLNVPMNRAVVVESDQPFAELSI 62

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++P  AD+   S RT+Y+ GK  G   + ++  +G+ + N+D+ +  D+   +  LR+ +
Sbjct: 63  ANPAIADISSLSERTIYVLGKTPGTTTLTILDGNGRLITNVDVRVAADVTEFKERLRQIL 122

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              +I V   +D +VL G V + Q  QRA++L++ +            + ++V NL+ + 
Sbjct: 123 PGESIEVRTANDGIVLSGTVSSAQKLQRALDLAQRY------------APERVSNLMTVG 170

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----- 246
           G  QV LKV  AE++R + K +    SI G   G  +       G +++ G  +      
Sbjct: 171 GVQQVMLKVRFAEMQRSVSKNLRSSLSIGGPIFGEDEITIGSETGTWLNSGNSYGDAVTV 230

Query: 247 --------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                   + G         +L ALE    +RTLAEP LTA+SGQ A F +GG++    V
Sbjct: 231 ADGTESALLLGFNGAIEVGILLEALESKGMVRTLAEPNLTALSGQEAKFLAGGEYPVP-V 289

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVR 354
           S   G  SVT   +GV L+F PTV+    I L+++  VS          +A  + ++R R
Sbjct: 290 SQEDGKLSVTYKPFGVELNFVPTVIDGDLINLQLEAAVSSIDSSNGITTDAISIDAFRRR 349

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  TTVE+  G +  +AGLL+DD + +   +P +  IP+LGALFR++ + R+++E+ I  
Sbjct: 350 ETSTTVEMRDGESFAIAGLLQDDFRDVNGQVPWIGDIPVLGALFRSAEYERQQSELVIIV 409

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN----KIYGPKEASEVEGQNYKGAIG 470
           TP LV P     L+ P D      +   F F R +    +      A+EV  Q++ G+ G
Sbjct: 410 TPHLVTPTRGEALALPTDRVMPPTEKDLFLFGRTSSDDARRPRTGGAAEVARQDFTGSYG 469

Query: 471 FIY 473
           ++ 
Sbjct: 470 YVM 472


>gi|56697919|ref|YP_168290.1| type II/III secretion system protein [Ruegeria pomeroyi DSS-3]
 gi|56679656|gb|AAV96322.1| bacterial type II/III secretion system protein [Ruegeria pomeroyi
           DSS-3]
          Length = 475

 Score =  364 bits (935), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 127/480 (26%), Positives = 231/480 (48%), Gaps = 33/480 (6%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++   L     + + +  + +A    +    V+ G  + + + +N+ I+++      ++ 
Sbjct: 13  LIKAALTGLALACSPMTGLAQAQDLRV----VKQGAAETLDVPMNRAIVVESETPFAELS 68

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++   AD+   S RT+Y+ GK+ G   + L    G+ + N+++ +  D+A  +  L++ 
Sbjct: 69  IANAGIADISSLSDRTIYVLGKSPGLTTLSLFDAGGRLITNVNVRVSFDVAEFKERLKQI 128

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           + +  I V   +D +VL G   +    QRA++L+E +            + ++V NL+++
Sbjct: 129 LPNEKIEVRTANDGIVLSGTASSTARLQRALDLAERY------------APERVSNLMSV 176

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVS--- 240
           AG  QV LKV  AE++R + K +     ++G +          S S     GG   +   
Sbjct: 177 AGVQQVMLKVRFAEMQRSVSKSLSASLGVSGGNIVGGLNTLNSSGSLTNAIGGSIPALND 236

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G               +L ALER   +RTLAEP L+A+SGQ A F +GG++    V+ 
Sbjct: 237 NAGAILFGFSAGSTQVRLLLEALERKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQ 295

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
             G  +V    +GV + F P V+    I L +   VS       + VN  D+ +++ R+ 
Sbjct: 296 RDGLFTVEYKPFGVEMAFIPRVVDGDLINLELLAAVSSLDPNNSVTVNGFDIAAFQRRET 355

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTVEL  G +  +AGL++D+     + +P L  +P+LGALFR++ + R +TE+ I  T 
Sbjct: 356 STTVELKDGESFAIAGLIEDEFLDNNQQLPWLGDVPVLGALFRSANYQRSQTELVIIITA 415

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIYK 474
            LV P     L+ P D      +A  F   +  +    +   ASEV  Q++ G+ G++ +
Sbjct: 416 HLVSPTRGEALALPTDRVKPPSEADLFLRGKTARTERARGGAASEVARQDFSGSYGYVLE 475


>gi|163738370|ref|ZP_02145785.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
 gi|161388291|gb|EDQ12645.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis BS107]
          Length = 484

 Score =  364 bits (934), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 125/484 (25%), Positives = 230/484 (47%), Gaps = 35/484 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            F   ++  L   +     +      N   +    V+ G    + + +N+ ++++  V  
Sbjct: 18  AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  
Sbjct: 74  SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ +    I V   +D +VL G+V +    QRA++L+E +            + ++V N
Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
           L+++ G  QV LKV  AE++R + K +     + G             ++ G   +  + 
Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                    G F        F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++
Sbjct: 242 NIPAGNDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
               V+   G  ++    +G+ L+F P V+    I L ++  VS          N   + 
Sbjct: 302 PIP-VAQEDGIITIEFKPFGIELNFVPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R+  TTVEL  G +  +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE
Sbjct: 361 AFSRRETSTTVELRDGESFAIAGLIRDEFRDSSSQLPWIGDVPVLGSLFRSANYQRAQTE 420

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           + I  +  LV P     LS P D      +++ F   RV K      ASEV  Q++ G+ 
Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479

Query: 470 GFIY 473
           G++ 
Sbjct: 480 GYVM 483


>gi|84687277|ref|ZP_01015157.1| Outer membrane general secretion pathway protein, Secretin
           [Maritimibacter alkaliphilus HTCC2654]
 gi|84664710|gb|EAQ11194.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2654]
          Length = 474

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 136/488 (27%), Positives = 227/488 (46%), Gaps = 38/488 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               +   L     S   +P    A    +       G  + +++ +N+ ++++      
Sbjct: 3   LDRYVKAALTGLALSWITVPLPGMAQTLRVMDG----GVAETLNVPMNRAVVVESDQPFA 58

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           ++ +++P  AD+   S RT+Y+ GK+ G+  + L+  DG  + N+++ +  D++  +  L
Sbjct: 59  EISIANPGIADISTLSDRTIYVLGKSQGRTTLTLLAPDGTLISNVEVQVTPDLSEFKERL 118

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+ +    I V   +D +VL G V +I    RA++L+E +            +  KV NL
Sbjct: 119 RQILPGEPIEVRTANDGIVLSGTVTSIAALDRALDLAERY------------APDKVSNL 166

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------ 241
           L++ G  QV LKV  AE++R + K +        + +G   S      G   +       
Sbjct: 167 LSVGGTQQVMLKVRFAEMQRSVTKSLSSSLGFGTNINGLGGSIGTGALGNQANLDAASAG 226

Query: 242 ---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                     G F+         F  +L ALE    +RTLAEP LTA+SGQ ASF +GG+
Sbjct: 227 DLISTGNDRTGAFTFGFNAGALQFAVMLEALENKGMVRTLAEPNLTALSGQEASFLAGGE 286

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDM 348
           +   +V    GA  +    +GV L FTP V+    I L++   VS        G  A  +
Sbjct: 287 YPIPSV-QENGAVVIDYKPFGVELTFTPRVVDQDIINLQMTASVSGLDNSVTYGDGAISV 345

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  +PILGALFR++ + R ++
Sbjct: 346 NAFKRRETSTTVEMRDGQSFAIAGLLQDDFRDLNGQVPWLGDVPILGALFRSADYERSQS 405

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYK 466
           E+ I  TP LV P     L+ P D      +A  F          P    A EV  Q++ 
Sbjct: 406 ELVIIVTPHLVTPTRGEALALPTDRVRPPSEADLFLRGNTAAPNRPTTGAAGEVARQDFT 465

Query: 467 GAIGFIYK 474
           G+ G++ +
Sbjct: 466 GSYGYVME 473


>gi|254466441|ref|ZP_05079852.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
 gi|206687349|gb|EDZ47831.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium Y4I]
          Length = 468

 Score =  363 bits (931), Expect = 4e-98,   Method: Composition-based stats.
 Identities = 121/484 (25%), Positives = 226/484 (46%), Gaps = 35/484 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
                ++  L   +           A +  +    V+ G    + + +N+ ++++  +  
Sbjct: 2   AIRRFVAAALMGLSLIGVPQADGAWAQSLRV----VKKGTAATLDVPMNRAVVVESEIPF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D+   +  
Sbjct: 58  AELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDGSGRLITNVDVRVAADVTEFKQR 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + +  I V   +D +VL G V +    QRA++L+E +            + ++V N
Sbjct: 118 LRQILPNEKIEVRTANDGIVLSGTVSSSARLQRALDLAERY------------APERVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGG 236
           L+++ G  QV LKV  AE++R + K +                  ++   S + A    G
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLGFNGGTGNGRTGGYNTLNTSGALANSLAG 225

Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              +     G F             +L ALE+   +RTLAEP L+A+SGQ A F +GG++
Sbjct: 226 NIPAANENTGAFLFGFNAGSVQVSLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 285

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMP 349
               V+   G  ++    +G+ L+F P V+    I L +   VS      +       + 
Sbjct: 286 PVP-VAQEGGVITIEFKPFGIELNFIPRVIDGDLINLELNAAVSAIDPTNSLELSGLTID 344

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R+  TTVE+  G +  +AGL++D+       +P L  +P+LGALFR++ + RE+TE
Sbjct: 345 AFSRRETSTTVEMRDGESFAIAGLIRDEFLDNSSQLPWLGDVPVLGALFRSADYQREQTE 404

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           + I  +  LV P     L+ P D  +   +   F F R ++      A+EV  Q++ G+ 
Sbjct: 405 LVIIVSAHLVTPTRGEALTLPTDRVAPPSEKDLFLFGRTSR-NRAGPAAEVAKQDFNGSY 463

Query: 470 GFIY 473
           G++ 
Sbjct: 464 GYVL 467


>gi|227823971|ref|YP_002827944.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
 gi|227342973|gb|ACP27191.1| pilus assembly protein CpaC, contains signal peptide [Sinorhizobium
           fredii NGR234]
          Length = 515

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 210/517 (40%), Positives = 304/517 (58%), Gaps = 45/517 (8%)

Query: 1   MRYLQRTFFTMMSI----FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           M+    TF T ++      L  S   +  +P  + A ++V+ I +   G  +K+++GLNK
Sbjct: 1   MKRSGNTFRTCLAAGLSFSLTFSGLMLPAVPTAQAAASSVVRIVESGPGVKRKVNLGLNK 60

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G +G+++++L++ +
Sbjct: 61  AVVVDLPTDAHDILVADPVLADAVTRTSRRIYLFGKTVGQTNIFVFGPNGEEIVSLEVAV 120

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ- 175
           ERD+A LE  LRRFI +++I VE++SD VVL G VRT  DS +AV+L+  FL        
Sbjct: 121 ERDVAGLEANLRRFIPEADINVEIISDNVVLTGTVRTPLDSTKAVDLARAFLQGGEATTR 180

Query: 176 --------------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                              + +++NLL + GEDQVTLKVT+AEV R +LKQ+GF   I+ 
Sbjct: 181 NITAQGTNGDADIFAEERQTSQIVNLLTVEGEDQVTLKVTVAEVSRQVLKQLGFNGRISD 240

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             SG S    A+ G   +  G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAIS
Sbjct: 241 GESGLSFRNPANLG-DAIGVGANALIKGSIGPTTISSYINAMEQAGVMRTLAEPSLTAIS 299

Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-------------VTTHDYGVVLHFTPTVLSPGRI 328
           GQ A F  GG+     V   T                 V   +YG+ L+F P VL  GRI
Sbjct: 300 GQEAKFYVGGEFRLAGVQEITTEEDEATGESVPVVEREVEDAEYGIRLNFKPVVLGAGRI 359

Query: 329 GLRIQTEVSEPVIGVN-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            L I+TEVSEP    +                  R R+A T+VELPSGG+IV+AGL++D+
Sbjct: 360 SLAIETEVSEPTYEGSVVTGNSFRDIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDN 419

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           I+Q   G+P  SKIPILG LFR+  F R E+E+ I ATP+LV+PVA   LSRPDD+++  
Sbjct: 420 IRQAMSGLPGASKIPILGTLFRSKDFQRNESELVIIATPYLVRPVARSALSRPDDNFNPA 479

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +D ++FF  RVN+IYG  EA+   G+ Y G +GFIYK
Sbjct: 480 NDLESFFVGRVNRIYGRPEAAPPVGR-YHGNVGFIYK 515


>gi|163757627|ref|ZP_02164716.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
 gi|162285129|gb|EDQ35411.1| putative pilus assembly transmembrane protein [Hoeflea
           phototrophica DFL-43]
          Length = 496

 Score =  362 bits (928), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 213/493 (43%), Positives = 297/493 (60%), Gaps = 27/493 (5%)

Query: 5   QRTFFTMMSIFLFSSN--------PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           +    ++  I L  S         P+  +L    +A+  +I I     G  K++ +GLNK
Sbjct: 8   KSLLSSIAGIALVGSVLVTGVLVDPTTGRLATPAQASQNIIKIKKSGPGVSKRVKLGLNK 67

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            I++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G +G++++ +++ I
Sbjct: 68  AIVVDLPTDAHDILVADPALADAVTRTSRRLYLFGKTVGQTNIFVFGPNGEEIIAIELEI 127

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL-------- 168
           ERD+A LE+ L RF+ DSNI+VE++SD +VL G VRT QD+ +A  L+E FL        
Sbjct: 128 ERDVAGLEVHLARFLPDSNIQVEIISDNIVLTGSVRTPQDASQAARLAEIFLTGGEATTR 187

Query: 169 -------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                           +    K++NLL I GEDQVTLKVTIAEV R +LKQ+GF  +I+G
Sbjct: 188 VTTATSEGGDAAINAEDRQKSKIVNLLKIDGEDQVTLKVTIAEVSRQVLKQLGFNTTISG 247

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S    +  + +           SV G +        + ALERA  IRTLAEP+LTAIS
Sbjct: 248 DGSSSFGNSPSPWL-SVPGLASVGSVAGTISGARISADISALERAGVIRTLAEPSLTAIS 306

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           G+ A F+ GG    ++     G T     +YG+ L FTP VL+PGRI LRI+TEVSEP  
Sbjct: 307 GEVARFSVGGSFEIESERDEDG-TIFEEKEYGIKLEFTPVVLAPGRISLRIKTEVSEPTF 365

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              +  +PS + R+A+T+VELPSGG++VLAGL++D  +Q   G+P  SKIP+LG+LFR+ 
Sbjct: 366 EGQS-PLPSIQKREAETSVELPSGGSMVLAGLVRDSYRQTISGMPGASKIPVLGSLFRSK 424

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            F R ETE+ I ATP+LVKPVA  +LSRPDD+++   D   FF  RVN++YG  E     
Sbjct: 425 EFLRNETELVIIATPYLVKPVARNELSRPDDNFNAPSDGAGFFLGRVNRVYGQMETGLPA 484

Query: 462 GQNYKGAIGFIYK 474
           G+ Y GA+GFIYK
Sbjct: 485 GR-YHGAVGFIYK 496


>gi|163742213|ref|ZP_02149601.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
 gi|161384543|gb|EDQ08924.1| bacterial type II/III secretion system protein [Phaeobacter
           gallaeciensis 2.10]
          Length = 484

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 124/484 (25%), Positives = 231/484 (47%), Gaps = 35/484 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            F   ++  L   +     +      N   +    V+ G    + + +N+ ++++  V  
Sbjct: 18  AFRRYVAAALTGLSLVCFPVADAAWGNGLRV----VKKGTAANLEVPMNRAVVVESDVPF 73

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  
Sbjct: 74  SELSIANPSIADISSLSDRTIYVLGKSPGLTTLTLLDASGRLITNVDVRVAADVSEFKER 133

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ +    I V   +D +VL G+V +    QRA++L+E +            + ++V N
Sbjct: 134 LRQILPGEKIEVRTANDGIVLSGVVSSSARLQRALDLAERY------------APERVSN 181

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
           L+++ G  QV LKV  AE++R + K +     + G             ++ G   +  + 
Sbjct: 182 LMSVGGVQQVMLKVRFAEMQRTVSKSLSASLGVKGGNSVGVNGGTSTLNTQGALTNSLSG 241

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                    G F        F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++
Sbjct: 242 NIPAANDNTGAFVFGFNAGAFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEY 301

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
               V+   G  ++    +G+ L+F P V+    I L ++  VS          N   + 
Sbjct: 302 PIP-VAQEDGVITIEFKPFGIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIA 360

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R++ TTVE+  G +  +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE
Sbjct: 361 AFSRRESVTTVEMRDGESFAIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTE 420

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           + I  +  LV P     LS P D      +++ F   RV K      ASEV  Q++ G+ 
Sbjct: 421 LVIIVSAHLVTPTRGEALSLPTDRIRPPSESELFLMGRVAKGQ-KGPASEVAKQDFNGSY 479

Query: 470 GFIY 473
           G++ 
Sbjct: 480 GYVM 483


>gi|84501676|ref|ZP_00999848.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
 gi|84390297|gb|EAQ02856.1| bacterial type II/III secretion system protein [Oceanicola
           batsensis HTCC2597]
          Length = 474

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 132/490 (26%), Positives = 233/490 (47%), Gaps = 39/490 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+ + +   LF    +    P   +A      ++ V      ++++ +N+ ++++  V  
Sbjct: 2   TYSSYLRAALFGMTLATGSFPVTAQAE----RLTIVNRNSESRLNVAINRAVVVESDVSF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P  AD+   S  ++Y+ GK  G   + L+  +G+ + N+D+++  DI+  +  
Sbjct: 58  AELSIANPQIADISSLSDTSIYVLGKTPGITTLTLLDAEGRLISNVDVVVSADISEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + D  I V   +D +V+ G+V + Q  QRA++L+E +            + ++V N
Sbjct: 118 LRQILPDEKIEVRTANDGIVMSGVVSSSQKLQRALDLAERY------------APERVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------- 235
           L+++ G  QV LKV  AE++R + K +    +  GS  G +   +   G           
Sbjct: 166 LMSVGGVQQVMLKVRFAEMQRSVSKSLSASLAADGSIFGGNVGVSGGTGRYSNAGNQGNG 225

Query: 236 -----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    +  G   +           +L ALE    +RTLAEP LTA+SGQ A F +G
Sbjct: 226 LGGNLPTPNTNSGATLLGFNAGAVQVGVLLEALEAKGVVRTLAEPNLTALSGQEAKFLAG 285

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
           G++    V+   G  +V    +GV ++F P V+    I L +Q  VS          NA 
Sbjct: 286 GEYPVP-VAQDGGTVTVEFKPFGVEMNFIPRVVDDDIINLELQAAVSAIDPNNGFELNAF 344

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            + ++  R+  TTVEL  G +  +AGLL+DD +     +P L  IP++GALFR++ + R 
Sbjct: 345 RIDAFTRRETSTTVELRDGDSFAVAGLLQDDFRDTNSQVPWLGDIPVIGALFRSADYQRN 404

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG--PKEASEVEGQN 464
           ++E+ I  T  LV P     L+ P D      +   F F R  K        A EV  Q+
Sbjct: 405 QSELVIIITAHLVSPTRGEALALPTDRVKPPSEKDLFLFGRTAKDTRKLRGAAKEVAKQD 464

Query: 465 YKGAIGFIYK 474
           + G+ G++ +
Sbjct: 465 FNGSYGYVME 474


>gi|126729098|ref|ZP_01744912.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
 gi|126710088|gb|EBA09140.1| bacterial type II/III secretion system protein [Sagittula stellata
           E-37]
          Length = 473

 Score =  360 bits (923), Expect = 4e-97,   Method: Composition-based stats.
 Identities = 129/488 (26%), Positives = 225/488 (46%), Gaps = 38/488 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           TF   +   L      +A + P   A++  +    V  G    +S+ +N+ ++++     
Sbjct: 2   TFDGYLKAALCGLALGIATMSPPAHADSIRV----VRTGTESVLSVPMNRAVVVESDTPF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK  G   + ++   G+ + N+D+ +  D+   +  
Sbjct: 58  AELSIANPSIADISSLSDRTIYVLGKQPGTTTLTILDPQGQLITNVDVRVAADVTEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L + + +  I V   +D +VL G V +I   +RA++L++ +            +  +V N
Sbjct: 118 LTQILPEERIEVRTANDGIVLSGTVSSIARMERALDLAQRY------------APDRVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239
           L+ + G  QV LKV  AE+RR + K +    +  GS+            G          
Sbjct: 166 LMVVGGIQQVMLKVRFAEMRRSVSKALRASLATGGSTGDLGVELGTGNAGTLAERDLVAD 225

Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                     G               +L ALE    +RTLAEP LTA+SGQ ASF +GG+
Sbjct: 226 KLFPRRLGTEGAVLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEASFLAGGE 285

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348
           +   T       T V    +GV L F P V+    I L ++  VS              +
Sbjct: 286 YPVPTAQGDNSVT-VEFKPFGVELAFVPRVIDGDLINLELEAAVSSVDSANGITFQDVTI 344

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             +  R+A TTVEL  G +  +AGLL+++   L   +P +  +PILGALFR++ + RE++
Sbjct: 345 AGFARREAKTTVELRDGESFAIAGLLQENFADLNGQVPWIGDVPILGALFRSTEYQREQS 404

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQNY 465
           E+ I  TP LV P     L+ P D  ++  + + F   +++   +      A+EV  Q++
Sbjct: 405 ELVIIVTPHLVTPTRGEALALPTDRVTLPSERQLFLNGKIDGNGRRPRSGAAAEVANQDF 464

Query: 466 KGAIGFIY 473
            G+ G++ 
Sbjct: 465 NGSYGYVM 472


>gi|260574616|ref|ZP_05842619.1| type II and III secretion system protein [Rhodobacter sp. SW2]
 gi|259023033|gb|EEW26326.1| type II and III secretion system protein [Rhodobacter sp. SW2]
          Length = 470

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 138/492 (28%), Positives = 240/492 (48%), Gaps = 44/492 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
             R F+T     L     +   L P+        ++  +E    + + + LN+ ++++  
Sbjct: 2   FMRNFWT---AGLLGLALATTALSPVAAQ-----SLRVMEGSASRALEVPLNRAVVVESD 53

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V   ++ +++P  AD+   S +++Y+ GK  G+  + L+G DG+ + N+++ +  D+A  
Sbjct: 54  VPFAELSIANPGIADISTLSDKSIYVLGKAPGRTTLTLLGPDGRLISNVEVQVSPDVAEF 113

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  LR+ +    I V   +D +VL G V +     RA++L+E +            + ++
Sbjct: 114 KERLRQILPGELIEVRTANDGIVLSGTVSSTAKLDRALDLAERY------------APER 161

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------------- 227
           V NL+++ G  QV LKV  AE++R + K +    +I GS+ G +                
Sbjct: 162 VSNLMSVGGTQQVMLKVRFAEMQRSVAKNLSASLAINGSTGGGNVGVNAGSGQFTAGGTR 221

Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              FA        +  G  ++        F  +L ALE    +RTLAEP LTA+SGQ A 
Sbjct: 222 DGVFAGTSQSGADNSEGVATIGFSAGSLQFAVLLEALESKGVVRTLAEPNLTALSGQEAK 281

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
           F +GG++    V+  +G+ SV    +GV ++FTP V+    I L I   VS     V   
Sbjct: 282 FLAGGEYPIP-VADGSGSISVEYKPFGVEMNFTPVVVDGDIINLTINAAVSSIDSTVTVQ 340

Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                + +++ R+  TTVE+  G +  +AGLL+DD + L   +P L  IPILGALFR++ 
Sbjct: 341 NAGFTLNAFKRRETSTTVEMRDGESFAIAGLLQDDFRDLNGQVPWLGDIPILGALFRSAE 400

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           + R ++E+ I  TP LV P     L+ P D   +  + + F F + +   G     EV  
Sbjct: 401 YQRAQSELVIIVTPHLVTPTRGEALALPTDRIRIPTERELFLFGKTSGARG--ATGEVAR 458

Query: 463 QNYKGAIGFIYK 474
           Q++ G+ G++ +
Sbjct: 459 QDFSGSYGYVME 470


>gi|150398541|ref|YP_001329008.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150030056|gb|ABR62173.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 524

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 210/507 (41%), Positives = 308/507 (60%), Gaps = 37/507 (7%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             + +     S +L  S  ++    P + A+++V+ I +   G  K I++GLNK +++ +
Sbjct: 20  RFRASLAAGFSFWLIFSGMALPTAAPAEAASSSVVRIVNSGPGARKTINLGLNKAVVVDL 79

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P D  D+LV+DP+ AD +  + R +YLFGK+VGQ N+ + G  G+++++L++ +ERD+A 
Sbjct: 80  PSDAHDILVADPSLADAITRTSRRIYLFGKSVGQTNIFVFGPGGEEIVSLEVAVERDVAG 139

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ------- 175
           LE  LRRFI D++I+VE++SD VVL G VRT  DS RAV+L+  FL              
Sbjct: 140 LESNLRRFIPDADIKVEIISDNVVLTGTVRTPLDSTRAVDLARAFLKGGEATTRNITAQG 199

Query: 176 --------YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                     +  S +++NLL I G+DQVTLKVT+AEV R +LKQ+GF   ++   SG S
Sbjct: 200 NNGDADIFAEDRQSSQIVNLLTIEGDDQVTLKVTVAEVSRQVLKQLGFNGRVSDGESGIS 259

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
               A+ G   +  G +  +KG +   +  + ++A+E+A  +RTLAEP+LTAISGQ A F
Sbjct: 260 FRNPANLG-DMIGIGTNALIKGSIGGTTISSYINAMEQAGVMRTLAEPSLTAISGQEAKF 318

Query: 288 TSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             GG+                 +T    V   +YG+ L+F P VL PGRI L+I+T+VSE
Sbjct: 319 YVGGEFRLAGVQEVSTDDDSGETTVEREVNDVEYGIRLNFKPVVLGPGRISLQIETDVSE 378

Query: 339 PV------IGVNAGDMPS-----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           P        G    ++P       R R+A T+VELPSGG+IV+AGL++D+I+Q   G+P 
Sbjct: 379 PTYEGSVVTGNGTVNIPGNTFLGIRRREASTSVELPSGGSIVIAGLVQDNIRQAMSGLPA 438

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
            SKIPILG LFR+  F R ETE+ I ATP+LV+PVA   +SRPDD+++  +D ++FF  R
Sbjct: 439 ASKIPILGTLFRSKDFQRSETELVIIATPYLVRPVARSAISRPDDNFNPANDLESFFLGR 498

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VN+IYG  EA    G+ Y G +GFIYK
Sbjct: 499 VNRIYGRAEAQPPAGR-YHGNVGFIYK 524


>gi|114764946|ref|ZP_01444119.1| bacterial type II/III secretion system protein [Pelagibaca
           bermudensis HTCC2601]
 gi|114542658|gb|EAU45682.1| bacterial type II/III secretion system protein [Roseovarius sp.
           HTCC2601]
          Length = 471

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 132/455 (29%), Positives = 227/455 (49%), Gaps = 32/455 (7%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++  V  G    +S+ +N+ ++++      ++ +++P  AD+   S RT+Y+ GK  G  
Sbjct: 29  SLRVVRTGTESVLSVPMNRAVVVESDRPFAELSIANPAIADISSLSDRTIYVLGKTPGTT 88

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + ++  +G+ + N+D+ +  D+   +  LR+ + +  I V   +D +VL G + + Q  
Sbjct: 89  TLTILDANGRLITNVDVRVAADVTEFKERLRQILPNEPIEVRTANDGIVLSGTISSAQKL 148

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           QRA++L+E +            + ++V NL+ + G  QV LKV  AE++R + K +    
Sbjct: 149 QRALDLAERY------------APERVSNLMTVGGVQQVMLKVRFAEMQRSVAKNLRSSL 196

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGD------------FSVKGVLDRFSFETVLHALER 265
           S+TG+  G  ++  A   G  + + G+            F +           +L ALE 
Sbjct: 197 SVTGTLFGNDETTLASETGTLIGQSGNTSINVNDDAEGAFLLGFNSGALQVGILLEALES 256

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               RTLAEP LTA+SGQ A F +GG++    VS   G T V+   +GV L+F P V+  
Sbjct: 257 KGISRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDDGTTIVSYKPFGVELNFVPRVVDG 315

Query: 326 GRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             I L ++  VS              + ++R R+  TTVE+  G +  +AGLL+DD + L
Sbjct: 316 DLINLELEAAVSSIDSSNGITTGEITIDAFRRRETSTTVEMRDGESFAIAGLLQDDFRDL 375

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L  IP+LGALFR++ + RE++E+ I  TP LV P     L+ P D      +  
Sbjct: 376 NGQVPWLGDIPVLGALFRSAEYEREQSELVIIVTPHLVTPTRGEVLALPTDRVRPPTEKD 435

Query: 442 AFFFNRV---NKIYGPKEASEVEGQNYKGAIGFIY 473
            F + R     +      A+EV  Q++ G+ G++ 
Sbjct: 436 LFLYGRTASDTRRPQSGGAAEVAKQDFTGSYGYVM 470


>gi|222147182|ref|YP_002548139.1| component of type IV pilus [Agrobacterium vitis S4]
 gi|221734172|gb|ACM35135.1| component of type IV pilus [Agrobacterium vitis S4]
          Length = 525

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 213/522 (40%), Positives = 299/522 (57%), Gaps = 51/522 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLP----------PIKEANAAVINISDVEIGKGKKI 50
           MR      F MM     S   S++ LP           +     +++ I+    G  + +
Sbjct: 7   MRLSSARLFRMMITGSLSLGLSISGLPGENMLVWRADALAAGAQSLVRIAQTGPGVRRDL 66

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            +GLNK I++ +P D  D+LV+DP  AD V  + R +YLFGK VGQ N+ + G DG++++
Sbjct: 67  KLGLNKAIVVDLPEDAHDILVADPELADAVTRTSRRIYLFGKKVGQTNIFIFGADGREIV 126

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +LD+ IERDI  L+  L RFI +SNI+VE++SD VVL G VRT QDS RAV L++ FL  
Sbjct: 127 SLDLQIERDIEGLQTNLSRFIPESNIKVEIISDNVVLSGTVRTPQDSSRAVSLAKAFLQG 186

Query: 171 SGRNQYANSSSKK------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                   +++                    ++N+L I GEDQVTLKVT+AEV R +LKQ
Sbjct: 187 GEATTRGETATSNSSGDGAVAIYAEDRQTSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQ 246

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   S T  +SG S +  ++ G      GG  ++      F     ++A+E+A  +RTL
Sbjct: 247 LGVSASATDGTSGISYANPSNLGNSVD-VGGTATISKTFGSFGISAYVNAMEQAGVMRTL 305

Query: 273 AEPTLTAISGQSASFTSGGQH---------LYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           AEP+LTAISG+ A F  GG++            T    T + + +T DYG+ L+F P VL
Sbjct: 306 AEPSLTAISGEQAKFYVGGEYRLAAGQEISTDSTTGQKTVSRTTSTVDYGIQLNFRPVVL 365

Query: 324 SPGRIGLRIQTEVSEPV-----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           SPGRI L I+T VSEP              +      S R R+A TTVELPSGG+IV+AG
Sbjct: 366 SPGRISLAIETNVSEPTYEGSVVEGNSDSSIPGSTYLSIRKREASTTVELPSGGSIVIAG 425

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+++Q   G+P +SKIPI G LFR+  F R ETE+ I ATP+LV+PV    L+RPDD
Sbjct: 426 LVQDNVRQAMSGLPGISKIPIFGTLFRSKDFVRNETELVIIATPYLVRPVTRNALARPDD 485

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +++   D   +F NRVNK+YG KEA+      Y G +G+IYK
Sbjct: 486 NFNPAGDGAMYFLNRVNKVYGRKEAT--ANGAYHGTVGYIYK 525


>gi|163745846|ref|ZP_02153205.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
 gi|161380591|gb|EDQ05001.1| bacterial type II/III secretion system protein [Oceanibulbus
           indolifex HEL-45]
          Length = 478

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 127/488 (26%), Positives = 222/488 (45%), Gaps = 35/488 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               +   L         L     ++A    +  V+ G    + + +N+ ++++  +   
Sbjct: 3   IDRFLKAALLGLTLGAMPLALTLPSSAGADTLRVVKRGTNSSLDVPMNRAVVVESDIPFA 62

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           ++ +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  L
Sbjct: 63  ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAGGQLITNVDVRVAADVSEFKERL 122

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+ +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V NL
Sbjct: 123 RQILPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNL 170

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236
           +++ G  QV +KV  AE++R++ K +G   +I              S+  S   A+  GG
Sbjct: 171 MSVGGIQQVMMKVRFAEMQRNVSKSLGSSLAINGAIGGTGINGGTGSTNSSGGVASSLGG 230

Query: 237 KFVS---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              S     G               +L ALE    +R LAEP L A+SGQ A F +GG++
Sbjct: 231 TIPSSNQNAGAVLFGFNAGSTQVGILLEALEEKGVVRFLAEPNLVALSGQEAKFLAGGEY 290

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDM 348
               V+ +    +V    +GV L F P V+    I L +   VS           N  ++
Sbjct: 291 PVP-VAQTGDTIAVEFKPFGVELAFIPRVVDKDIINLEMNAAVSAIDGSNSIALGNGIEI 349

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R +T
Sbjct: 350 SAFTRRETSTTVEMRDGESFAIAGLLTDDFTDSTRQLPWIGDVPVLGALFRSADYQRSQT 409

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNY 465
           E+ I  T  LV P     L  P D      +   F   R     +      A EV  Q++
Sbjct: 410 ELVIIVTAHLVTPTRSEALVLPTDRIKPPSEKDLFLHGRTADGTRTPTRGAAGEVAKQDF 469

Query: 466 KGAIGFIY 473
           +G+ G++ 
Sbjct: 470 RGSYGYVL 477


>gi|260431084|ref|ZP_05785055.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414912|gb|EEX08171.1| bacterial type II/III secretion system protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 452

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 211/466 (45%), Gaps = 31/466 (6%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
                   A A  + +     G  + + + +N+ I+++      ++ +++   AD+   S
Sbjct: 1   MSPAGYDAARAENLRVVKK--GTAETLDVPMNRAIVVESETPFAELSIANAGIADISSLS 58

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            RT+Y+ GK  G   + L    G  + N+ + +  D+   +  LR+ + +  I V   +D
Sbjct: 59  DRTIYVLGKAPGLTTLTLFDGAGNLIANVRVRVAPDVTEFKERLRQILPNERIEVRTAND 118

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            +VL G V +     RA+EL+E +            + ++V NL+N+ G  QV LKV  A
Sbjct: 119 GIVLSGTVSSSAKLARALELAERY------------APERVSNLMNVGGVQQVMLKVRFA 166

Query: 204 EVRRDILKQIGFQHSITGS-------SSGPSKSFAADFGGKFV---SEGGDFSVKGVLDR 253
           E+ R + K +       GS       S   S S +   G       S  G          
Sbjct: 167 EMNRSVAKSLSASLGFGGSDVTGGINSLNNSFSLSNALGNNIPVSQSNTGAILFGFGAGS 226

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                +L ALE     R+LAEP L+A+SGQ A+F +GG+     V    G  ++    +G
Sbjct: 227 TQVRLLLEALEAKGLARSLAEPNLSALSGQEATFLAGGEVPIP-VPQDDGVVAIEYKSFG 285

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIV 369
           V + F P V+    I L +   VS         +N   +PS+  R+  TTVEL  G +  
Sbjct: 286 VEIDFIPRVVDGDLINLEMAASVSAIDTSSDFTINGDSVPSFVTRQTSTTVELRDGESFA 345

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGL++DD   L   IP L  +P+LGALFR++ + RE++E+ I  T  LV P     L+ 
Sbjct: 346 IAGLIQDDFTDLSNQIPWLGDVPVLGALFRSAEYQREQSELVIIITAHLVSPTRGEALAL 405

Query: 430 PDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGFIY 473
           P D      +   F   RV++    G   ASEV  Q++  + G++ 
Sbjct: 406 PTDRVKPPSEFDLFLNGRVSRTERAGNGAASEVANQDFGSSYGYVL 451


>gi|254487886|ref|ZP_05101091.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
 gi|214044755|gb|EEB85393.1| bacterial type II/III secretion system protein [Roseobacter sp.
           GAI101]
          Length = 486

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 130/489 (26%), Positives = 223/489 (45%), Gaps = 36/489 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++  LF        L            +  V  G  + + + +N+ ++++  +   
Sbjct: 10  IDRFITAALFGLTICAMPLALAAPTAVQADTLRVVNRGTNRALEVPMNRAVVVESDIPFA 69

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           ++ +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  DI+  +  L
Sbjct: 70  ELSIANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVASDISEFKERL 129

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+ +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V NL
Sbjct: 130 RQILPGEKIEVRTANDGIVLSGIVSSTQGLQRALDLAERY------------APERVSNL 177

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQ----------IGFQHSITGSSSGPSKSFA-----A 232
           +++ G  QV LKV  AE++R + K           +G   +I G ++  + S A      
Sbjct: 178 MSVGGIQQVMLKVRFAEMQRSVSKSLSASLALNGLLGSDLAINGGTNTTNGSTAIANSLN 237

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  S  G               +L ALE+  A+R LAEP L A+SGQ A+F +GG+
Sbjct: 238 GSTPTTNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGE 297

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGD 347
           +      S     SV    +GV + F P V+    I L ++  VS           N  D
Sbjct: 298 YPVPVSQSGD-RISVEYKPFGVEMSFIPRVVDKNLINLELKAAVSAIDPSNSVSLGNGFD 356

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + ++  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R +
Sbjct: 357 ISAFTRRETSTTVEMRDGESFAIAGLLTDDFTDTSRQLPWIGDVPVLGALFRSANYQRSQ 416

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN---KIYGPKEASEVEGQN 464
           TE+ I  T  LV P     L+ P D      + + F   R +   K      A EV  Q+
Sbjct: 417 TELVIIITAHLVTPTRGDALALPTDRIKPPTENELFLSGRTSSGGKAPTRGAAGEVAKQD 476

Query: 465 YKGAIGFIY 473
           + G+ G++ 
Sbjct: 477 FSGSYGYVL 485


>gi|254510970|ref|ZP_05123037.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221534681|gb|EEE37669.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 476

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 129/483 (26%), Positives = 221/483 (45%), Gaps = 33/483 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T  + +S  L   +  V+ +     A     N+  V+ G  + + + +N+ I+++     
Sbjct: 10  TIRSWISATLLGLSLVVSPIGDAAWAQ----NLRVVKKGTAESLDVPVNRAIVVESEQPF 65

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            D+ +++   AD+   S RT+Y+ G+  G   + +    G  + N+ + +  D+   +  
Sbjct: 66  ADISIANAGIADISTLSDRTIYVLGRAPGITTLTMFDGAGNLITNVRVRVSPDVTEFKER 125

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           LR+ + +  I V   +D +VL G V +     RA+EL+E +            + ++V N
Sbjct: 126 LRQILPNEQIEVRTANDGIVLSGTVSSSARLARALELAERY------------APERVSN 173

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGG 236
           LLN+ G  QV LKV  AE+ R + K +       G          ++ G   +  A+   
Sbjct: 174 LLNVGGVQQVMLKVRFAEMNRSVAKNLSASLGFGGGDATGGFNSLNNQGALNNALANNIP 233

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G               +L ALE    +R+LAEP L+A+SGQ A F +GG+    
Sbjct: 234 FVQTNSGAVLFGFGAGSTQVRLLLEALETKGLVRSLAEPNLSALSGQEAEFLAGGEVPIP 293

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYR 352
            V    G  ++    +GV L F P V+    I L +   VS         +N   +PS+ 
Sbjct: 294 -VPQGDGVVAIEYRQFGVQLLFVPRVVDGNLINLELGASVSSIDQSSDFTINGDSVPSFI 352

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  TT+EL  G +  +AGL++DD   L   +P L  +P+LGALFR++++ RE++E+ I
Sbjct: 353 TRQTRTTIELRDGESFAIAGLIQDDFTDLNTQVPWLGDVPVLGALFRSAQYQREQSELII 412

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIG 470
             T  LV P     L+ P D      +   F   +V +    G   ASEV  Q++  + G
Sbjct: 413 IITAHLVSPTRGEALALPTDRVKPPSEFDLFVNGKVARTERAGNGAASEVAKQDFGTSYG 472

Query: 471 FIY 473
           ++ 
Sbjct: 473 YVL 475


>gi|92116013|ref|YP_575742.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91798907|gb|ABE61282.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 486

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 172/486 (35%), Positives = 269/486 (55%), Gaps = 28/486 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           LQ      +S    ++      L P+  ++  V   +       + +S+G+ K +++ +P
Sbjct: 10  LQAIVARSLSFAAIAAFTLNPALTPVFASDYRVPAATAGAKMHAQSLSLGIGKSVVVDLP 69

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            DV+DVLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L
Sbjct: 70  RDVKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDGSGQQISAYDIAVTRDLNGL 129

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L++ + +++I+++ + D VVL G  ++  +SQ+A +L+                + K
Sbjct: 130 RAALKQILPNADIKIDGLGDGVVLSGWAQSPVESQQAADLAARLAGG----------ADK 179

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------- 235
           V+N + + G DQV LKV +AEV+RDI+KQ+G   S   S      +F             
Sbjct: 180 VVNSIAVRGRDQVMLKVVVAEVQRDIIKQLGVDLSANLSYGTAVVNFNNSNPFLATGSAL 239

Query: 236 --GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G  V  G   S+   +   + +  L A+E +  IRTLAEP+LTAISG+SA+F +GG+ 
Sbjct: 240 VPGNSVVGGFGKSIINGVTMPTVQATLRAMENSGVIRTLAEPSLTAISGESANFLAGGEF 299

Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAG 346
              +  S    T   +VT   +G+ L+FTP VLS GRI LR+ TE SE      I ++  
Sbjct: 300 PIPSGVSCTNGTCTPTVTFKKFGISLNFTPVVLSEGRISLRVATEASEVNNENAIQISGT 359

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS + R+ADTT+E+PSGG++V+AGL+K   +Q   G+P +S+IP+LG LFR+  +   
Sbjct: 360 AVPSIKTRRADTTLEIPSGGSMVMAGLIKQQTKQSISGMPGVSQIPVLGTLFRSRDYVNN 419

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            TE+ I  TP++V+ VA +DLSRPDD ++   D +A     +N+IYG    +E   Q Y+
Sbjct: 420 NTELMILVTPYVVRAVAQKDLSRPDDGFADASDPQADLLGSINRIYGVPGRAEPARQ-YR 478

Query: 467 GAIGFI 472
           G  GFI
Sbjct: 479 GTYGFI 484


>gi|85859139|ref|YP_461341.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
 gi|85722230|gb|ABC77173.1| flp pilus assembly protein, secretin [Syntrophus aciditrophicus SB]
          Length = 503

 Score =  355 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 134/509 (26%), Positives = 229/509 (44%), Gaps = 49/509 (9%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKL-PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            R    +   F+     S+A          AA  +   V   + +K+++ + K  I++ P
Sbjct: 1   MRPCPGLKVHFVACCLISIALCFLIALPCVAAGPDRVVVNTSRPQKLTLTVGKSTIVECP 60

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            +++ V ++ P  AD++  SPR +YL GK  G  N+ L   D   M  +D+ +  D+  L
Sbjct: 61  QNLKRVSIAAPDYADILTLSPRQIYLTGKMAGNTNLTLWRSDNSVMSVIDVEVLPDVVGL 120

Query: 124 EMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +  +   + D  +IRV    D + L G V +  +  + + L+ ++  +          + 
Sbjct: 121 KEKIHSMMPDEKDIRVTATPDAITLSGTVSSAANMNQVMSLANSYAPK------GKDKTG 174

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
            V N L + G  QV L+V ++E+ R ++K++G   +                        
Sbjct: 175 GVNNFLEVGGVHQVMLEVRVSEMSRSLIKKLGINWNYLSEGGNTFGMSMLDNLTYTVSPS 234

Query: 229 ------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                       S  A   G  VS     + +      ++   + A++    ++ LAEPT
Sbjct: 235 DANIQPMTHLSASEGAVSVGTLVSSSVGLAFRFFGGGATWTLFIDAMKDQGLLKVLAEPT 294

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L  +SG++ASF +GG+             ++    +GV L+FTPTVLS  +I +++  EV
Sbjct: 295 LLTLSGKTASFLAGGEFPIPVPQEEN--ITIEYKPFGVGLNFTPTVLSNKKISMQVSPEV 352

Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S+      + V    +PS   R+  TTVEL  G +  +AGLLKDDI+Q+   +PLL  IP
Sbjct: 353 SDLDYTNAVAVGGYAVPSITTRRVATTVELADGQSFAIAGLLKDDIRQIVRKVPLLGDIP 412

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG+LFR+S+F + ETE+ I  TP LVKP+ M   + P D Y   +D + +    +    
Sbjct: 413 VLGSLFRSSQFRKNETELVIIVTPRLVKPLDMTKQTLPTDQYVEPNDFEFYLLGSLEGKG 472

Query: 453 GPKEASEVE---------GQNYKGAIGFI 472
               A+                +G  G+I
Sbjct: 473 ENDSATPTPVSSALPGDKTGGLEGDFGYI 501


>gi|325291659|ref|YP_004277523.1| component of type IV pilus [Agrobacterium sp. H13-3]
 gi|325059512|gb|ADY63203.1| component of type IV pilus [Agrobacterium sp. H13-3]
          Length = 527

 Score =  354 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 207/494 (41%), Positives = 302/494 (61%), Gaps = 41/494 (8%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +P+  ++   +  +A+++ I++   G  K++ +GLNK +++ +P D  D+LV+DP+ AD 
Sbjct: 36  SPAFLRISEAEAQSASIVRITESGSGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V  + + +YLFGK VGQ N+ + G  G+++++LD+ +ERDI+ LE  +RRFI +S+I+VE
Sbjct: 96  VTRTSKRIYLFGKTVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182
           +VSD +VL G VRT QDS RAV+L+E FL                          N  + 
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLAEAFLKGGEATTRNISLTGGNNGGDAAIFAENRQTS 215

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240
           +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  SI+ S+S     F+  ++ G     
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSNNGFEFSNPSNLGNAISG 275

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK---- 296
                S        +F + L+A+E+A  +RTLAEP+LTAISG+ A F  GG         
Sbjct: 276 ASRIASGAIGSGSLNFASYLNAMEQAGVVRTLAEPSLTAISGEQAKFYVGGDFRLPAEQE 335

Query: 297 -----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344
                     T   +  T DYG+ L+F P VLSPGRI L+I+T VSEP    N       
Sbjct: 336 VTIDKDTGQPTITRTTNTVDYGITLNFRPVVLSPGRISLKIETNVSEPTYEGNVVTGNAG 395

Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                    S R R+  TTVELPSGG+IV+AGL++D+I+Q   G+P +SK+PI G LFR+
Sbjct: 396 RTIPGSTYMSIRKRETSTTVELPSGGSIVIAGLVQDNIRQAMSGLPGISKVPIFGTLFRS 455

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             F R ETE+ I ATP+LV+PVA   ++RPDD+++ E+DA  +F NRVNK+YG K+   V
Sbjct: 456 KDFIRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513

Query: 461 EGQNYKGAIGFIYK 474
           +   Y+G++GFIYK
Sbjct: 514 QAAPYQGSVGFIYK 527


>gi|153008059|ref|YP_001369274.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
 gi|151559947|gb|ABS13445.1| type II and III secretion system protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 507

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 192/509 (37%), Positives = 285/509 (55%), Gaps = 37/509 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
           MR  +R       + L +S  +   LP     A AA   +      + + I +GLNK ++
Sbjct: 1   MRKTKRVRPYSAKVALLTSALAAFSLPLTDMSAMAAAGVVKVGSQQRSQTIKLGLNKSVV 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61  LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGPNGEQVASIDVEIERD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177
           ++ +   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+S          
Sbjct: 121 VSGISSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQFT 180

Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                              N  +  ++N+L I GEDQVTLKVT+AEV R ++KQ+G   +
Sbjct: 181 TTASAPTDGGGVAINNPDRNRRASAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMA 240

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +G S+G S    ++     +      +  G+    +F   L A+E A  ++TLAEPTLT
Sbjct: 241 GSGVSNGISYGGISESIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299

Query: 279 AISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           AISG+ A+F  GG++                 +   +YG+ L F PTVL PGRI L+I+T
Sbjct: 300 AISGEKAAFNVGGEYNVINSVKYDDDGKRTNELAKINYGIGLEFMPTVLGPGRISLKIRT 359

Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            VSEP                 + S R R ADTTVELPSGG++++ GL++D+++Q   G 
Sbjct: 360 SVSEPTTEGAGTTNKMDGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+ +   D   +  
Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479

Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +VN++YG  E     G+ Y G +G+IYK
Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|83943939|ref|ZP_00956396.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
 gi|83954512|ref|ZP_00963223.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83840796|gb|EAP79967.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           NAS-14.1]
 gi|83845186|gb|EAP83066.1| bacterial type II/III secretion system protein [Sulfitobacter sp.
           EE-36]
          Length = 479

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 123/486 (25%), Positives = 224/486 (46%), Gaps = 36/486 (7%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
            +   L                +A    +  V+ G  + + + +N+ ++++  +   ++ 
Sbjct: 6   FIKAALLGLTIGAMPFALTAPIDAQANTLRVVKKGTNRVLEVPMNRAVVVESDIPFAELS 65

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++P  AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +  LR+ 
Sbjct: 66  IANPGIADISSLSDRTIYVLGKSPGLTTLTLLDAAGQLITNVDVRVAADVSEFKERLRQI 125

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I V   +D +VL G+V + Q  QRA++L+E +            + ++V NL+++
Sbjct: 126 LPGEKIEVRTANDGIVLSGIVSSTQRLQRALDLAERY------------APERVSNLMSV 173

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFG 235
            G  QV +KV  AE+ R + K +    ++ G               +++G   +      
Sbjct: 174 GGIQQVMMKVRFAEMSRSVSKSLSASLALNGLVGNDLAINGGTNTTNTAGAIANSLGGTT 233

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               S  G               +L ALE+  A+R LAEP L A+SGQ A+F +GG++  
Sbjct: 234 PASNSNAGAVLFGFNAGSTQVGLLLEALEQKGAVRFLAEPNLVALSGQEATFLAGGEYPV 293

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPS 350
             V+ +    SV    +GV + F P V+    I L ++  VS           N  D+ +
Sbjct: 294 P-VAQTGDQISVQYKPFGVEMSFIPRVVDKDLINLELKAAVSAIDASNSVSLGNGFDISA 352

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R+  TTVE+  G +  +AGLL DD       +P +  +P+LGALFR++ + R ++E+
Sbjct: 353 FTRRETSTTVEMRDGESFAIAGLLTDDFTDNSSQLPWIGDVPVLGALFRSANYQRSQSEL 412

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK---EASEVEGQNYKG 467
            I  T  LV P     L+ P D      +++ F   R +K         A EV  Q++ G
Sbjct: 413 VIIITAHLVTPTRGEALALPTDRIKPPTESELFLSGRTSKGSTAPTKGAAGEVAKQDFSG 472

Query: 468 AIGFIY 473
           + G++ 
Sbjct: 473 SYGYVL 478


>gi|254440636|ref|ZP_05054129.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
 gi|198250714|gb|EDY75029.1| Putative phospholipid-binding domain family [Octadecabacter
           antarcticus 307]
          Length = 474

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 135/489 (27%), Positives = 223/489 (45%), Gaps = 39/489 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T+   +   L         LP   +A    +            +++ +N+ ++++  V  
Sbjct: 2   TYDRFLKATLTGLAIMFTNLPVQLQAETLRVMRG----APSSALNVPMNRAVVVESDVPF 57

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            ++ +++P+ AD+   S RT+Y+ GK  G+  + L+G DG+ + N+++ +  DIA  +  
Sbjct: 58  TELSIANPSIADISSLSDRTIYVLGKEPGRTTLTLLGGDGRLITNVEVHVTPDIAEFKER 117

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L + +   NI V   +D +VL G V +I    RA+EL+  +            +  +V N
Sbjct: 118 LEQILPGENIEVRTANDGIVLSGTVSSIARLDRALELANRY------------APDRVSN 165

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------SSGPSKSF 230
           L+++ G  QV L+V  AE++R + K +    ++ GS                 +    S 
Sbjct: 166 LMSVGGTQQVMLRVRFAEMQRSVSKSLSSSLALGGSTLGGDLGLALGTGATVGNTGRLST 225

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            +          G F             +L ALE    +RTLAEP LTA+SGQ ASF +G
Sbjct: 226 LSGATPANNDNAGAFLFGFNAGGVEVGILLEALENRGVVRTLAEPNLTALSGQEASFLAG 285

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
           G++        +  T V    +G+ L FTP V+    I L +   VS          N  
Sbjct: 286 GEYPVPISQDGSAIT-VEYKPFGISLSFTPRVIDGDIINLELHASVSSLDPTNGFSQNGF 344

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            + ++R R+  TTVE+  G +  +AGLL DD   L   +P    IP+LGALFR++ ++R+
Sbjct: 345 SIDAFRTRETSTTVEMRDGESFAIAGLLSDDFVDLSGQVPWAGDIPVLGALFRSAEYSRQ 404

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQN 464
           +TE+ I  TP LV P     L+ P D      +   F F RV          A EV  Q+
Sbjct: 405 QTELVIIVTPHLVTPTRGDALALPTDRVRPPTERDLFLFGRVTAEDAPQSGGAGEVARQD 464

Query: 465 YKGAIGFIY 473
           + G+ G++ 
Sbjct: 465 FSGSYGYVL 473


>gi|110679396|ref|YP_682403.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109455512|gb|ABG31717.1| type II/III secretion system protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 463

 Score =  353 bits (906), Expect = 4e-95,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 218/471 (46%), Gaps = 22/471 (4%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++   L     SV+ +      +A    +  +     + +++  N+ ++++  +   ++ 
Sbjct: 6   ILKAALLGLAISVSPIAFTAPLSAQAEALRIIARETSETLNVSQNRAVVVESEIPFAELS 65

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++P  AD+   S R++Y+ GK  G   + L+   G+ + N+++ +  D+   +  LR+ 
Sbjct: 66  IANPGIADISSLSDRSIYVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQI 125

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I V   +D +VL G V + Q   +A+EL+  +            +  +V NL+ +
Sbjct: 126 LPGEAIEVRTANDGIVLSGQVSSSQRLSKALELAARY------------APDRVSNLMTV 173

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--SSGPSKSFAADFGGKFVSEGGDFSVK 248
            G  QV LKV  AE+ R + KQ+     I GS   +G  +           S  G     
Sbjct: 174 GGVQQVMLKVRFAEMSRGVSKQLQSSLRIGGSDAQAGIGRGIGGIPNLAADSAQGAVFFD 233

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             L     + +L ALE   A+RTLAEP L ++SGQ A+F +GG++       S    SV 
Sbjct: 234 FGLGSTQVQLLLEALETKGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVD 291

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELP 363
              +G+ L+F P V+    I L++    S               + ++  R+A TTVE+ 
Sbjct: 292 FKPFGIELNFVPRVVDGDLINLQLSAATSSIDPSNGISVGDGFTVDAFIRREASTTVEMR 351

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G +  +AGLL+D+       +P +S +PILGALFR++ + R +TE+ I  T  LV P  
Sbjct: 352 DGESFAIAGLLEDNFNDNITQVPWISDVPILGALFRSTDYMRNQTELVIIITAHLVTPTR 411

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIY 473
              L+ P D      +   F   R +  +     A EV  Q++ G+ G++ 
Sbjct: 412 GEALALPTDRIRPPSEKDLFLNGRTIETLNARGSAGEVAKQDFSGSYGYVM 462


>gi|239833237|ref|ZP_04681566.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
 gi|239825504|gb|EEQ97072.1| type II and III secretion system protein [Ochrobactrum intermedium
           LMG 3301]
          Length = 507

 Score =  353 bits (905), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 192/509 (37%), Positives = 281/509 (55%), Gaps = 37/509 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVII 59
           MR   R       I L +   +   LP     A AA   +      + + I +GLNK ++
Sbjct: 1   MRKTNRVRPYSARIALLAGALATVSLPLADMTAMAAAGIVKVGSQQRSQTIKLGLNKSVV 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L +P D  DVLVS+PT AD V  + R +YLFGK VGQ N+ + G +G+Q+ ++D+ IERD
Sbjct: 61  LDLPQDAYDVLVSNPTIADAVTRTSRRIYLFGKQVGQTNIFVFGQNGEQVASIDVEIERD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA-- 177
           ++ L   L+R I  S+IRVE+++D VVL G V+T QDS +A +L+  F+S          
Sbjct: 121 VSGLSSQLKRLIPGSDIRVELINDNVVLTGTVQTPQDSAQAAKLAGLFVSGGEATTGQYS 180

Query: 178 -------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                                    ++N+L I GEDQVTLKVT+AEV R ++KQ+G   +
Sbjct: 181 TTASAPTDGGGVAINNPDWGRRQSAIVNMLTIVGEDQVTLKVTVAEVSRSVMKQLGVNMT 240

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +G S+G S    ++     +      +  G+    +F   L A+E A  ++TLAEPTLT
Sbjct: 241 GSGVSNGISYGGISENIAGAIGNNLSDTGFGLATS-NFSAYLRAMESAGVMKTLAEPTLT 299

Query: 279 AISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           AISG+ A+F  GG++                 +   +YG+ L F PTVL PGRI L+I+T
Sbjct: 300 AISGEKAAFNVGGEYNVINSVTYDDDGKRTNQLAKINYGIGLEFMPTVLGPGRISLKIRT 359

Query: 335 EVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            VSEP                 + S R R ADTTVELPSGG++++ GL++D+++Q   G 
Sbjct: 360 SVSEPTTEGAGTTNKMEGVGASVLSLRKRVADTTVELPSGGSMMIGGLIRDEVRQSVSGF 419

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L+KIP+LGALFR+  F R E+E+ +  TP+L +PVA + L+RPDD+ +   D   +  
Sbjct: 420 PGLTKIPVLGALFRSKDFIRNESELVVIVTPYLARPVARQQLARPDDNLNPASDGAGYIL 479

Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +VN++YG  E     G+ Y G +G+IYK
Sbjct: 480 GKVNRVYGTMETKLPPGR-YNGVVGYIYK 507


>gi|254463467|ref|ZP_05076883.1| bacterial type II/III secretion system protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206680056|gb|EDZ44543.1| bacterial type II/III secretion system protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 474

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 137/492 (27%), Positives = 230/492 (46%), Gaps = 42/492 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            +   T+ + FL  +    A + P       ++       G    + I +N+ ++++  V
Sbjct: 1   MKKLNTLRAAFLGCAVLFTASVAPAHADTLRIVRS-----GSSSTLPIPMNRAVVVESDV 55

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
              ++ +++P+ AD+   S RT+Y+ GK+ G   + L+   G+ + N+D+ +  D++  +
Sbjct: 56  PFAELSIANPSIADISTLSDRTVYVLGKSPGLTTLTLLDDAGRLITNVDVRVSADVSEFK 115

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             LR+ +    I V   +D +VL G V +     RA++L++ +            + ++V
Sbjct: 116 ERLRQILPGEKIEVRTANDGIVLSGTVSSAGKVDRAMDLAQRY------------APERV 163

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------- 236
            NLL+++G  QV LKV  AE++R + K +    ++ GS+ G + S               
Sbjct: 164 TNLLSVSGVQQVMLKVRFAEMQRSVSKSLSSSLALGGSALGGNLSVRGGTNTLASGAASS 223

Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      +  G               +L ALE    +RTLAEP LTA+SGQ A F 
Sbjct: 224 AAIAGTAPANNANNGATLFGFNAGGLEVGILLEALESKGMVRTLAEPNLTALSGQEAKFL 283

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
           +GG++     SSS     +    +GV L F P VL    I L +  EVS           
Sbjct: 284 AGGEYPIPVQSSSG--VQIQFKPFGVQLAFIPRVLDDKVINLELNAEVSSLDAANGIVSD 341

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +   +VR+  TTVE+  G +  +AGLL+DD   L   +P L  IP+LGALFR++ + 
Sbjct: 342 GFAISGLKVRRTSTTVEMRDGESFAIAGLLQDDFTDLSGQVPWLGDIPVLGALFRSADYK 401

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV---NKIYGPKEASEVE 461
           RE++E+ I  TP LV P     L+ P D  S   +   F F RV   ++      A+EV 
Sbjct: 402 REQSELVIIVTPHLVTPTRGEALALPTDRISPPTEKDLFLFGRVTGDSRRPKKGAAAEVA 461

Query: 462 GQNYKGAIGFIY 473
            Q++ G+ G++ 
Sbjct: 462 RQDFTGSYGYVM 473


>gi|149200847|ref|ZP_01877822.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
 gi|149145180|gb|EDM33206.1| bacterial type II/III secretion system protein [Roseovarius sp.
           TM1035]
          Length = 472

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 126/466 (27%), Positives = 213/466 (45%), Gaps = 35/466 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
             + A A  I +          +S+ +N+ ++++      ++ +++P  AD    S RT+
Sbjct: 21  APQPAQAESIRVVRNGTSSA--LSVAMNRAVVVESDSPFAELSIANPAIADFSTLSERTI 78

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ GK  G+  + L    GK + N+D+ +  DI   +  L++ +    I V   +D +V+
Sbjct: 79  YVLGKTPGRTTLSLFDGLGKLITNIDVHVSTDIEEFKERLKQILPGEPIEVRSANDGIVI 138

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +    QRA++L+E +            + ++V NL++++G+ QV LKV  AE++R
Sbjct: 139 SGTVSSTSRMQRALDLAERY------------APERVSNLMSVSGKQQVMLKVRFAEMQR 186

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------EGGDFSVKGVLD 252
            + K +    SI    +                                   F+    + 
Sbjct: 187 SVSKALSSSLSIDARGANSVGVIGGTNTTNTQGGVLGTLAGAIPGTNENNAAFAFGFDVG 246

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                 +L ALE    +RTLAEP LTA+SGQ A F +GG+     V+     TS+    +
Sbjct: 247 SVEVGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEFPVP-VAQDNDTTSIEFKPF 305

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368
           GV L+F P V+  G I L +   VS          N   +P++R R   TTV L  G + 
Sbjct: 306 GVELNFVPRVVDDGIINLEMAAAVSSIDTANSLVSNGFAIPAFRRRDTSTTVALRDGESF 365

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            +AGLL+DD +     +P L  +P+LGALFR++ + R +TE+ I  +  LV P     L+
Sbjct: 366 AIAGLLQDDFRDNAGQVPWLGDVPVLGALFRSADYQRSQTELVIIVSAHLVSPSRGEALA 425

Query: 429 RPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAIGFIY 473
            P D   +  +   F   RV + +       EV  Q++ G+ G++ 
Sbjct: 426 LPTDRVKLPSEKDLFLNGRVARGVSDKGPVGEVAKQDFTGSYGYVM 471


>gi|86137993|ref|ZP_01056569.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
 gi|85825585|gb|EAQ45784.1| bacterial type II/III secretion system protein [Roseobacter sp.
           MED193]
          Length = 459

 Score =  352 bits (902), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 128/476 (26%), Positives = 226/476 (47%), Gaps = 32/476 (6%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L   +     +P +  AN   +    V+ G    + + +N+ ++++      ++ +
Sbjct: 1   MAAALTGLSLLSIAVPEMGLANGLRV----VKRGTSVTLDVPMNRAVVVESDDPFAELSI 56

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++P  AD+   S RT+Y+ GK+ G   + L+   GK + N+++ +  D++  +  LR+ +
Sbjct: 57  ANPNIADISSLSDRTIYVLGKSPGLTTLTLLDASGKLITNVNVRVAADVSEFKERLRQIL 116

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               I V   +D +VL G V +    QRA++L+E +            + ++V NL+++ 
Sbjct: 117 PGEQIEVRTANDGIVLSGNVSSAARLQRALDLAERY------------APERVSNLMSVG 164

Query: 192 GEDQVTLKVTIAEVRRDILKQI------GFQHSITGSSSGPSKSFAADFGGKFV----SE 241
           G  QV LKV  AE++R + K +      G Q+      +G         G   +      
Sbjct: 165 GVQQVMLKVRFAEMQRSVSKALHSSVALGSQNGNASGETGQWLFGNNGLGNTPIEVKDGI 224

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  + +  +       +L ALE+   +RTLAEP L+A+SGQ A F +GG++        
Sbjct: 225 AGALAFQFGVGSLQVGLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIPVSQDG 284

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKAD 357
              T V    +G+ L+F P V+    I L ++  VS       +  N   + ++  R+  
Sbjct: 285 GTVT-VEFKPFGIELNFIPRVVDGDVINLELKAAVSAIDTSNTVTANGLSIAAFSRRETS 343

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G +  +AGL++DD       IP +  +P+LGALFR++ + RE+TE+ I  +  
Sbjct: 344 TTVELRDGESFAVAGLVQDDFLDNTSQIPWIGDVPVLGALFRSADYQREQTELVIIVSAH 403

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           LV P     LS P D      +++ F   R         ASEV  Q++ G+ G++ 
Sbjct: 404 LVTPTRGEALSLPTDRIKPPSESELFLLGRTVHSQ-KGPASEVAKQDFNGSYGYVM 458


>gi|149915642|ref|ZP_01904168.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
 gi|149810534|gb|EDM70377.1| bacterial type II/III secretion system protein [Roseobacter sp.
           AzwK-3b]
          Length = 467

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 127/479 (26%), Positives = 225/479 (46%), Gaps = 32/479 (6%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           +    L       +      +A     N+  V  G  + +++ +N+ ++++  V   ++ 
Sbjct: 6   LFKAALLGLAVVFSGFVTELQAE----NLQVVRNGAARDLNVTMNRAVVVESDVPFAELS 61

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +++P+ AD    S RT+Y+ GK  G+  + L+   G+ + N++I +  D++  +  L++ 
Sbjct: 62  IANPSIADFSTLSDRTIYVLGKAPGRTTLTLLDDSGRLITNVEIHVSTDVSEFKERLQQI 121

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           + +  I V   +D +VL G V +    +RA+ L++ +            +  +V NL+ +
Sbjct: 122 LPNERIEVRTANDGIVLSGSVSSTARMERALSLAQRY------------APDRVSNLMVV 169

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF----------GGKFVS 240
           AG  QV LKV  AE++R + KQ+    ++       + +  A            G    +
Sbjct: 170 AGNQQVMLKVRFAEMQRSVSKQLSTSLAVDALGVSGNGAALAGSNLPSAGANRVGITANN 229

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G       +       +L ALE    +RTLAEP LTA+SGQ A F +GG++    V+ 
Sbjct: 230 NAGVAFFGFDIGSVEIGILLEALETKGVVRTLAEPNLTALSGQEAKFLAGGEYPVP-VAQ 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
               TS+    +GV L+F P V+    I L +   VS           A ++ ++R R  
Sbjct: 289 DNNTTSIEFKPFGVELNFIPRVVDGDIINLEMAAAVSSIDPTNGINTGAFNVDAFRRRDT 348

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV+L  G +  +AGLL+DD +     +P L  +PILGALFR++ + R +TE+ I  + 
Sbjct: 349 STTVQLRDGESFAIAGLLQDDFRDTNAQVPWLGDVPILGALFRSADYARAQTELVIIVSA 408

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474
            LV P     L+ P D   +  +   F   R +N       A EV  Q++ G+ G++ +
Sbjct: 409 HLVTPTRGEALALPTDRVRLPSEMDLFLNGRVLNSNIPSGTAGEVARQDFTGSYGYVME 467


>gi|222084469|ref|YP_002542998.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
 gi|221721917|gb|ACM25073.1| pilus assembly secretion protein [Agrobacterium radiobacter K84]
          Length = 505

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 219/487 (44%), Positives = 307/487 (63%), Gaps = 26/487 (5%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           F++    L  +   V     + +A+ A   ++   +   + + +GLNK +++ +P D  D
Sbjct: 24  FSVAFAGLPIAEAPVFLRTAVAKADGADSIVTISGLNTKRTLKLGLNKALVVDLPADAHD 83

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           +LVSDP  AD V  + R +YLFGK VGQ N+ + G +G+++++LD+ IERDI+ L+  L+
Sbjct: 84  ILVSDPKMADAVTRTSRRIYLFGKTVGQTNIFVFGANGQEIVSLDLQIERDISGLQANLK 143

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------ 182
           RFI DS+I VE+VSD +VL G VRT QDS RA +L+  FL          ++S       
Sbjct: 144 RFIPDSDINVEIVSDNIVLTGSVRTPQDSSRAQQLAGAFLKGGEATTRTETASGTGGDSS 203

Query: 183 -----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                      +++NLL I GEDQVTLKVT+AEV+R +LKQIGF  ++  +SSG + +  
Sbjct: 204 VALFAEGRQTSQIVNLLQIEGEDQVTLKVTVAEVKRSVLKQIGFD-NLVSNSSGLTVAQL 262

Query: 232 ADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            +      +  G+  +  +      +++  + L+A+E+A A+RTLAEPTLTAISGQ+A+F
Sbjct: 263 GNISSDSTAATGNGGLSALFKTALGKYNVSSYLNAMEQAGAVRTLAEPTLTAISGQAATF 322

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SGGQ LY  V  S G  ++T + YG+ L FTP VLS GRI L +QT+VSEP     A  
Sbjct: 323 NSGGQTLYS-VIDSDGNVTITPYTYGISLAFTPVVLSAGRISLHVQTQVSEPTGTTGAAT 381

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              Y  R ADT+VELPSGG+I LAGLL D++QQ   G P  SKIPILGALFR   F R+E
Sbjct: 382 ---YNRRAADTSVELPSGGSIALAGLLSDNVQQSTTGTPGASKIPILGALFRQKTFQRDE 438

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           +E+ I ATP+LV+PVA   ++RPDD++S  +DA  FF NRVNKIYG K+A  V   ++ G
Sbjct: 439 SELVIIATPYLVRPVARNQIARPDDNFSPTNDAGVFFMNRVNKIYGRKDAPPVADADFHG 498

Query: 468 AIGFIYK 474
            +GFIYK
Sbjct: 499 TVGFIYK 505


>gi|99082186|ref|YP_614340.1| type II and III secretion system protein [Ruegeria sp. TM1040]
 gi|99038466|gb|ABF65078.1| Hypothetical 443 kDa protein y4xJ [Ruegeria sp. TM1040]
          Length = 497

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 124/461 (26%), Positives = 222/461 (48%), Gaps = 32/461 (6%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            + A    IS ++ G    + + +N+ ++++  V   ++ +++P+ AD+   S RT+Y+ 
Sbjct: 50  PSPAVAQGISVLKKGTNAVLDVPMNRAVVVEADVPFAELSIANPSIADISSLSDRTIYVL 109

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK+ G   + L+   G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G 
Sbjct: 110 GKSPGLTTLTLLDGSGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGT 169

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V + Q  QRA++L+E +            +  +V NL+ + G  QV LKV  AE+ R + 
Sbjct: 170 VSSAQRLQRALDLAERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVS 217

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------------GDFSVKGVLDRFSF 256
           K +G    I  S    +     + GG     G              G       +    F
Sbjct: 218 KSLGGSMLIRSSDGAIATGSFQNRGGNGNIFGDSVTSPVQLQSETLGAALFGFDIGAVQF 277

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             +L ALE+   +RTLAEP L+A+SGQ A+F +GG++    V+   G  +V    +G+ L
Sbjct: 278 NVLLEALEQKGLVRTLAEPNLSALSGQEANFLAGGEYPVP-VAQEDGVITVEFKPFGIEL 336

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +F P V+    I L ++  VS      +       + ++  R+  TTVEL  G +  +AG
Sbjct: 337 NFIPRVVDGDLINLELKAAVSAIDTTNSATFDGFSINAFSRRETATTVELRDGESFAIAG 396

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+ +     +P L  +P+LGALFR++ + R ++E+ I  +  LV P     L+ P D
Sbjct: 397 LIEDEFRDGAAQVPWLGDVPVLGALFRSADYARNQSELVIIVSAHLVTPTRGEALALPTD 456

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 +   F F +  +      A EV  Q++ G+ G++ 
Sbjct: 457 RIRPPSEKNLFLFGQTERAQ-AGAAGEVANQDFNGSYGYLL 496


>gi|126737254|ref|ZP_01752989.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
 gi|126721839|gb|EBA18542.1| bacterial type II/III secretion system protein [Roseobacter sp.
           SK209-2-6]
          Length = 446

 Score =  350 bits (898), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 125/462 (27%), Positives = 217/462 (46%), Gaps = 29/462 (6%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
             LP  + A A  + +     G    + + +N+ I+++      ++ +++P  AD+   S
Sbjct: 1   MALPVAEPAQANGLRVVKQ--GTSITLDVPMNRAIVVESDAPFAELSIANPNIADISSLS 58

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            RT+Y+ GK+ G   + L+   GK + N+++ +  D++  +  LR+ +    I V   +D
Sbjct: 59  DRTIYVLGKSPGLTTLTLLDGAGKLITNVNVRVAADVSEFKERLRQILPGEKIEVRTAND 118

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            +VL G V +    QRA++L+E +            + ++V NL+++ G  QV LKV  A
Sbjct: 119 GIVLSGTVSSSARLQRALDLAERY------------APERVSNLMSVGGVQQVMLKVRFA 166

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------GDFSVKGVLDRFS 255
           E+ R + K +    +   S     ++     G   +           G  ++      F 
Sbjct: 167 EMERSVSKTLSSSLAFGNSGDVIGETGTWLDGNNGLGNPVQVTQGTEGAVAISFGAGSFR 226

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              +L ALE+   +RTLAEP L+A+SGQ ASF +GG++    V +      +    +G+ 
Sbjct: 227 VGVLLEALEQKGIVRTLAEPNLSALSGQEASFLAGGEYPIPVVDADG--IGIEYKPFGIE 284

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLA 371
           L F P V+    I L ++  VS          N   +  +  R   TTVEL  G +  +A
Sbjct: 285 LDFIPRVVDQDVINLELEAVVSAIDPTTTVVQNGLTINGFTRRATSTTVELRDGESFAIA 344

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D+       +P +  IPI+GALFR++ + RE+TE+ I  +  LV P     L+ P 
Sbjct: 345 GLVQDEFTDSNGQVPWVGDIPIIGALFRSASYQREQTELVIIVSAHLVTPTRGEALTLPT 404

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           D      + + F F R          +EV GQ+Y G+ G++ 
Sbjct: 405 DRVKPPSENELFLFGRTEH-NRSGPVNEVAGQDYNGSYGYVL 445


>gi|126725970|ref|ZP_01741812.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
 gi|126705174|gb|EBA04265.1| Outer membrane general secretion pathway protein, Secretin
           [Rhodobacterales bacterium HTCC2150]
          Length = 466

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 128/482 (26%), Positives = 230/482 (47%), Gaps = 42/482 (8%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
              + +V+  P    A    +            +++ +N+ I+++      +V V++P+ 
Sbjct: 1   MGLSLAVSTAPLSGYAETLKVVKGS----PSNSLNVPMNRAIVVETETSFGEVSVANPSI 56

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+   S +T+Y+ GK  G+  + L+   G+ + N+D+ +  D+A  +  L++ +    I
Sbjct: 57  ADISTLSDKTIYVLGKAPGRTTLTLLDGTGRLISNVDVHVTPDVAEFKERLQQILPGEPI 116

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   +D +V+ G V +I    RA++L+  +            +  +V NL+++ G  QV
Sbjct: 117 EVRTANDGIVMSGTVSSIGKLDRALDLANRY------------APNRVSNLMSVGGTQQV 164

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------------ 244
            LK+  AE++R + K +    + +GS  G + +  A       S   +            
Sbjct: 165 MLKIRFAEMQRSVAKNLTGSLAFSGSLGGNAGATGASQTFSDGSNLANLYDGDSSTSATS 224

Query: 245 -------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  FS+        F+ +L ALE    +RTLAEP LTA+SGQ A F +GG++    
Sbjct: 225 SQDRDGLFSIGFSNGTIGFQVLLEALETKGVVRTLAEPNLTALSGQKADFLAGGEYPTPA 284

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYR 352
           +    G+  +    +G+ + FTPTV+    I L+++T VS     ++        +  ++
Sbjct: 285 I-DDNGSPIIEYKPFGIEMEFTPTVVDGDLINLQLKTSVSSLDTSISAQNSAGFTVFGFK 343

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            RKA TTVE+  G +  +AGLL+DD       +P L  +PI+GALFR+S + R+++E+ +
Sbjct: 344 TRKASTTVEMRDGQSFAIAGLLQDDFTDQSGQVPWLGDVPIIGALFRSSEYERKQSELVV 403

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG-PKEASEVEGQNYKGAIGF 471
             TP LV P     L+ P D   +  + + F F  V         A EV  Q++ G+ G+
Sbjct: 404 IVTPHLVTPTRGEALALPTDRVQIPTERELFLFGNVAGKKKIKGAAGEVARQDFSGSYGY 463

Query: 472 IY 473
           + 
Sbjct: 464 VM 465


>gi|15887573|ref|NP_353254.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
 gi|15155110|gb|AAK86039.1| component of type IV pilus [Agrobacterium tumefaciens str. C58]
          Length = 527

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 209/494 (42%), Positives = 300/494 (60%), Gaps = 41/494 (8%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +P   +    +  +A+++ I++   G  K++ +GLNK +++ +P D  D+LV+DP+ AD 
Sbjct: 36  SPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADA 95

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V  + R +YLFGK VGQ N+ + G  G+++++LD+ +ERDI+ LE  +RRFI +S+I+VE
Sbjct: 96  VTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVE 155

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSK 182
           +VSD +VL G VRT QDS RAV+L++ FL                               
Sbjct: 156 IVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVS 215

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVS 240
           +++N+L I GEDQVTLKVT+AEV R +LKQ+GF  SI+ S+SG    FA  ++ G     
Sbjct: 216 QIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDG 275

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH------- 293
                S         F + L+A+E+A  +RTLAEP+LTAISG+ A F  GG         
Sbjct: 276 ASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQE 335

Query: 294 --LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------- 344
             + K     T   +  T DYG+ L+F P VLSPGRI L+I+T VSEP    N       
Sbjct: 336 VDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGG 395

Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                    S R R+  TTVELPSGG+IV+AGL++D+++Q   G+P +SKIPI G LFR+
Sbjct: 396 RTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRS 455

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             F R ETE+ I ATP+LV+PVA   ++RPDD+++ E+DA  +F NRVNK+YG K+   V
Sbjct: 456 KEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQ--V 513

Query: 461 EGQNYKGAIGFIYK 474
           +   Y+G++GFIYK
Sbjct: 514 QAAPYQGSVGFIYK 527


>gi|146338123|ref|YP_001203171.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146190929|emb|CAL74934.1| putative Pilus assembly protein cpaC; putative signal peptide
           [Bradyrhizobium sp. ORS278]
          Length = 500

 Score =  350 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 163/493 (33%), Positives = 265/493 (53%), Gaps = 32/493 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R L     ++ +    + NP++A +       AA    +       + +++G+ K +++
Sbjct: 17  LRTLMVRALSLSAAAALTLNPALAPVIAADYRPAAAAPPAADGQINARFLALGVGKSVVI 76

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+
Sbjct: 77  DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDAQGQQIAAYDIAVKRDL 136

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                 L++ + +++I++E + D +VL G   +  ++Q+A EL+                
Sbjct: 137 NGARAALKQLLPNADIQIEGLGDGIVLTGSASSQIEAQQAGELAARLAGG---------- 186

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           ++KV+N + + G DQV LKVT+AEV+R ++KQ+G   S   +       FA         
Sbjct: 187 AEKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 246

Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 +          S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+     
Sbjct: 247 SNLVSNNAVSAAFGSTPSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 306

Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339
             S    T V         +G+ L+FTP VLS GRI +R+ TEVSE              
Sbjct: 307 GYSCDPTTHVCTTQISFKKFGISLNFTPIVLSEGRISMRVMTEVSELSNENSITLSQAVS 366

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              VN+  +PS + R+A+TT+E+PSGG + +AGL++   +Q   G+P L ++P+LGALFR
Sbjct: 367 STTVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGALFR 426

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  +   +TE+ +  TPF+V+ V+ +DLSRPDD ++   D +A     +N+IYG    +E
Sbjct: 427 SRDYVNNQTELMVLVTPFVVRAVSQKDLSRPDDGFAAASDPQADLLGSINRIYGVPGRTE 486

Query: 460 VEGQNYKGAIGFI 472
             G+NY+G  GFI
Sbjct: 487 P-GRNYRGTYGFI 498


>gi|84516633|ref|ZP_01003992.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
 gi|84509669|gb|EAQ06127.1| Outer membrane general secretion pathway protein, Secretin
           [Loktanella vestfoldensis SKA53]
          Length = 476

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 131/478 (27%), Positives = 218/478 (45%), Gaps = 35/478 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +       +     A A    +  +       + + +N+ ++++  V   ++ +++P  A
Sbjct: 10  ALAGVALSMTAAAPAMAQDSTLRVLRGAASNALDVPMNRAVVVESDVPFTELSIANPGIA 69

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D+   S RT+Y+ GK  G+  + L+  DG+ + N+++ +  D+A  +  L + +   NI 
Sbjct: 70  DISSLSDRTIYVLGKEPGRTTLTLLSADGRLITNVEVHVSPDMAEFKERLTQILPGENIE 129

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V   +D +VL G V +     RA++L++ +            +  +V NL+++ G  QV 
Sbjct: 130 VRTANDGIVLSGTVSSTARLDRALDLAQRY------------APDRVSNLMSVGGTQQVM 177

Query: 198 LKVTIAEVRR-------------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---E 241
           LKV  AE++R                 Q G       +++               +    
Sbjct: 178 LKVRFAEMQRSVSKALSSSLSLNGTSLQNGRNIRGGSNTTVGQAGITNTLNNIVPTANDN 237

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G F             +L ALE    +R+LAEP LTA+SGQ A+F +GG++    VSS 
Sbjct: 238 NGAFLFGFGAGGVEVGVLLEALESRGVVRSLAEPNLTALSGQQATFLAGGEYPVP-VSSE 296

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357
            GA SV    +GV L+FTP V+    I L +   VS          N  ++ ++  R+  
Sbjct: 297 DGAISVEYKPFGVELNFTPRVVDGDVINLELLAAVSAIDPSNSFSANGFEISAFSRRETS 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVE+  G +  +AGLL DD   L   +P +  +PILGALFR++ + R +TE+ I  TP 
Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLSGQVPWIGDVPILGALFRSAEYARRQTELVIIVTPH 416

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473
           LV P     L+ P D      +   F F RV     P    A EV  Q++ G+ G++ 
Sbjct: 417 LVSPTRGTALALPTDRVRPPSEQDLFLFGRVTAASAPTRGGAGEVARQDFMGSYGYVM 474


>gi|254501806|ref|ZP_05113957.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
 gi|222437877|gb|EEE44556.1| Putative phospholipid-binding domain family [Labrenzia alexandrii
           DFL-11]
          Length = 483

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 166/482 (34%), Positives = 273/482 (56%), Gaps = 21/482 (4%)

Query: 2   RYLQRTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           + ++R+     +   +      +A     +EA  + I+++  E    + +++G+ + +++
Sbjct: 14  KSIRRSGLRFCAFAAVMGLVSFMAPASWSQEAFPSQIHVAAGERATDRILNVGIGRSVVI 73

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +  D  DVLVS+P  AD V+ +PR +++ G   GQA ++L G  G+++ + DI +E+D 
Sbjct: 74  NLAEDAADVLVSNPQIADAVLRTPRRIFVLGNTAGQARLVLFGRSGRELASFDIRVEKDT 133

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           + +   +RR I  ++++ E ++  VVL G  ++  ++Q+A +++  F      +      
Sbjct: 134 SDITRIIRRLIPGTSVQAESINGKVVLSGTAKSTLEAQQAADIAAKFQGDETGSA----- 188

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
              ++NL+ ++G DQV LKVT+AEV R I+KQ+G         +G    F ++F    V+
Sbjct: 189 ---IVNLIAVSGSDQVHLKVTVAEVERSIIKQLGVSFQA-NLGAGNFFPFGSNFPNFNVN 244

Query: 241 EG----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     V       S    + AL+R   IRTLAEPTLTA SG++ASF +GG+    
Sbjct: 245 PSIVNQATGGVTFSSGTSSLTAQVEALQRDGVIRTLAEPTLTATSGENASFLAGGEFPIP 304

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
                    SV    +GV L FTP VL+ GRI LR++TEVSE      +      + + +
Sbjct: 305 IA-QEDNQISVEFKKFGVGLDFTPIVLTGGRISLRVKTEVSELSNEGAVSAGGITISALK 363

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+A++T+ELPSGGT+V+AGLL++  QQ  EG+P L +IP+LGALF++  F +++TE+ +
Sbjct: 364 VRRAESTMELPSGGTLVMAGLLEESYQQAVEGVPGLMQIPVLGALFKSRDFLKQQTELAV 423

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++VKPVA + + RPD +     DA+A F NR+NKI+    A E     Y G +GFI
Sbjct: 424 FVTPYVVKPVAAQKMVRPDKNLFAPSDAEAIFLNRLNKIF--NPAGEQAQGTYHGQVGFI 481

Query: 473 YK 474
           YK
Sbjct: 482 YK 483


>gi|27376550|ref|NP_768079.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
 gi|27349691|dbj|BAC46704.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110]
          Length = 496

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 261/493 (52%), Gaps = 34/493 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR       +  +      NP++  +       AA +  +       + +S+G+ K I++
Sbjct: 15  MRTSMVRALSFSAALALVLNPALTPVVAADYRPAAPV--AADGQMNARFLSLGVGKSIVI 72

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+
Sbjct: 73  DLPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSAGQQIAAYDIAVKRDL 132

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   L++ + +S+I+++ + + +VL G      ++Q+A +L+                
Sbjct: 133 NGVRAALKQILPNSDIQIDGLGEGIVLTGTAANPMEAQQANDLAARLAGG---------- 182

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           + KV+N + + G DQV LKVT+AEV R I+KQ+G   +   +      +F+       + 
Sbjct: 183 ADKVVNSIVVRGRDQVMLKVTVAEVARSIVKQLGIDLTANLNYGTSVVTFSNSNPFTALG 242

Query: 241 EG---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           +    G+          S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+     
Sbjct: 243 KNLVDGNSLTTKFGATPSVQATLRAMETAGVIRTLAEPNLTAISGESATFIAGGEFPVPA 302

Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------- 339
             +    T V         +G+ L+FTP VL+ G+I LR+ TEVSE              
Sbjct: 303 GYACDPTTHVCTTQISFKKFGISLNFTPVVLTEGKISLRVMTEVSELSNENAITLSQAVT 362

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              VN+  +PS + R+A+T++E+PSGG + +AGL++   +Q   G+P L ++PILG LFR
Sbjct: 363 STSVNSLTVPSIKTRRAETSLEIPSGGAMAMAGLIQQQTKQAVSGLPGLMQLPILGTLFR 422

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  F    TE+ +  TP++V+ VA +DLSRPDD +S   D +      +N+IYG    +E
Sbjct: 423 SRDFVNNATELVVIVTPYIVRAVAQKDLSRPDDGFSAPADPQVELLGNINRIYGVPGRTE 482

Query: 460 VEGQNYKGAIGFI 472
             G+NY+G  GFI
Sbjct: 483 P-GRNYRGTYGFI 494


>gi|126733573|ref|ZP_01749320.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
 gi|126716439|gb|EBA13303.1| bacterial type II/III secretion system protein [Roseobacter sp.
           CCS2]
          Length = 476

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 130/478 (27%), Positives = 219/478 (45%), Gaps = 35/478 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +       L     + A    +  +       +S+ +++ ++++  V   ++ +++P  A
Sbjct: 10  AIAGLTLSLTAAAPSIAPAETLRVLRGAASSALSVPMSRAVVVESDVPFTELSIANPGIA 69

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D+   S RT+Y+ GK  G+  + L+G +G+ + N++I +  D+A  +  L + +   NI 
Sbjct: 70  DISSLSDRTIYVLGKEPGRTTLTLLGENGRLITNVEIHVSPDMAEFKERLTQILPGENIE 129

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V   +D +VL G V +I    RA++L+E +            + ++V NL+ + G  QV 
Sbjct: 130 VRTANDGIVLSGTVSSIARLDRALDLAERY------------APERVSNLMMVGGTQQVM 177

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------------GKFVSE 241
           LKV  AE++R + K +    +++G       S                          + 
Sbjct: 178 LKVRFAEMQRSVSKALSTSVALSGLGFDDDVSITGGTNRTIGQSAINGALSGSVPGSNAN 237

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G               +L ALE    +R+LAEP LTA+SGQ A+F +GG++   T +  
Sbjct: 238 NGAVLFGFGAGGLEVGILLEALETRGVVRSLAEPNLTALSGQEATFLAGGEYPVPTANDG 297

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKAD 357
            G  SV    +GV L F P V+    I L +   VS          N   + ++  R+  
Sbjct: 298 -GTISVEFRPFGVELSFVPRVVDHDIINLELSAAVSAIDPSNGFQANGFSVDAFTRRETS 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVE+  G +  +AGLL DD   L   +P +  IP+LGALFR++ + R +TE+ I  TP 
Sbjct: 357 TTVEMRDGESFAIAGLLSDDFTDLNGQLPWVGDIPVLGALFRSAEYARRQTELVIIVTPH 416

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP--KEASEVEGQNYKGAIGFIY 473
           LV P     L+ P D      +   F F +V    GP    A EV  Q++ G+ G++ 
Sbjct: 417 LVSPTRGEALALPTDRVRPPTEQGLFLFGQVANEGGPSSGGAGEVARQDFSGSYGYVL 474


>gi|154250689|ref|YP_001411513.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154639|gb|ABS61856.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 491

 Score =  349 bits (895), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 162/470 (34%), Positives = 256/470 (54%), Gaps = 29/470 (6%)

Query: 23  VAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           V+        +A ++ I    IG   + I +GLNK  I+++P+  +DVLVS+P   D VV
Sbjct: 31  VSPAGGAFAGDARLVKIDQGGIGQSSRSIVLGLNKAAIVELPIAARDVLVSNPAIVDAVV 90

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
            + +  YL G  VGQ N       G+Q+LNL+I + RD+  L  +LR++   + I VE +
Sbjct: 91  RTNKRTYLIGLAVGQTNAFFFNEAGQQILNLEIRVARDLTGLRESLRQYFPKARIDVESI 150

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           +D VVL GMV +  D+ +A + +  ++             + V+N+L I G++QV LKVT
Sbjct: 151 NDHVVLSGMVASATDASKAQDFAARYIGGDK---------EHVLNMLGIEGKEQVMLKVT 201

Query: 202 IAEVRRDILKQIGFQHSITGS---------SSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +AE++R+++KQ+G   S   +         +S          GG   +       +    
Sbjct: 202 VAEMQRNVIKQLGVDLSTAANFGDFALRLATSNSFSVQGGSLGGLTTAADAADPTRYQSG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             + ++ + ALER   +RTLAEP LTAISG+SA F +GG+    T     G   +    +
Sbjct: 262 DVTVDSAIRALERDGILRTLAEPNLTAISGESAKFLAGGEFPVPTSRDRDGNVQLEFKPF 321

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTTVELP 363
           GV L+FTP VLS GRI L+I TEVSE              +   +P  +VR+A+TT+ELP
Sbjct: 322 GVGLNFTPVVLSEGRISLKISTEVSELTSEGAFVFQSTSADGVTVPGLKVRRAETTLELP 381

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGG++V+AGLL D ++Q  +G+P +  +P+LG LFR+  + + ETE+ +  TP+LV P +
Sbjct: 382 SGGSLVMAGLLSDTMRQNIDGVPGVKDVPVLGQLFRSRDYQKNETELVVIVTPYLVDPTS 441

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            ++L  P D ++   D       R+N  YG + A+  +  + +G +GFI 
Sbjct: 442 RKNLVLPTDGFAPASDMDTILMGRLNATYGARGAAPGD-HSLQGPVGFIV 490


>gi|159043678|ref|YP_001532472.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
 gi|157911438|gb|ABV92871.1| type II and III secretion system protein [Dinoroseobacter shibae
           DFL 12]
          Length = 474

 Score =  349 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 131/468 (27%), Positives = 222/468 (47%), Gaps = 37/468 (7%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A A V+ + + +      + + +N+ ++++  +   ++ V++P  AD+   S R++Y
Sbjct: 22  TAPAMAQVLRVQEGQAD--STLQVPMNRAVVVESDIPFAELSVANPGIADIATLSDRSIY 79

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           + GK+ G+  + L+G DG+ + N+D+ +  DIA  +  L + +   NI V   +D VVL 
Sbjct: 80  VLGKSQGRTTMTLLGADGRLITNVDVQVTPDIAEFKERLEQILPGENIEVRTANDGVVLS 139

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G   ++    RA++L++ +            +  +V NL++I G  QV LKV  AE++R 
Sbjct: 140 GTASSVTAMDRALDLAQRY------------APDRVSNLMSIGGSQQVMLKVRFAEMQRS 187

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGDFSVKGVLD 252
           + KQ+    +   S +  + S     GG                      G   +   + 
Sbjct: 188 VSKQLSGGLTAIYSGTDGAFSVGLGSGGLTDGGSIGGANSTEFTLNPEAAGTIGLGFNIG 247

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             S   +L ALE    +RTLAEP LT +SGQ ASF +GG++    V+   G  SV    +
Sbjct: 248 NVSLGILLEALESKGVVRTLAEPNLTTLSGQEASFLAGGEYPIP-VADGDGGISVEYKPF 306

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTI 368
           GV L F PTVL    I L +   VS          ++  +  +  R+  TTV+L  G + 
Sbjct: 307 GVELDFIPTVLDDDVINLELGAAVSALDSSASIITDSLTVQGFSRRETLTTVQLRDGDSF 366

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            +AGLL+DD +     +P L  IP+LGALFR++ + R ++E+ I  T  LV P     L 
Sbjct: 367 AIAGLLEDDFRDFAGQVPWLGDIPVLGALFRSADYARSQSELVIIVTAHLVSPTRGEALV 426

Query: 429 RPDDHYSVEDDAKAFFFNRV--NKIYGPKEASEVEGQNYKGAIGFIYK 474
            P D   +  + + F    +          A EV  Q++ G+ G++ +
Sbjct: 427 LPTDRVRIPSEREFFLNGNLVREDTPRRGAAGEVAQQDFSGSYGYVLE 474


>gi|241207157|ref|YP_002978253.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240861047|gb|ACS58714.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 499

 Score =  349 bits (894), Expect = 7e-94,   Method: Composition-based stats.
 Identities = 223/483 (46%), Positives = 307/483 (63%), Gaps = 25/483 (5%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
            S  + +S   +      +  + +++ IS       +++ +GLNK +++ +P D  D+LV
Sbjct: 22  ASGMVPASFAPLFGAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAHDILV 81

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           SDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ LRRFI
Sbjct: 82  SDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNLRRFI 141

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180
            DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++           
Sbjct: 142 PDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDSSVAL 201

Query: 181 ------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFA 231
                 S +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF +   + +G +     S +
Sbjct: 202 FAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQLGSPS 261

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           AD     V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F SGG
Sbjct: 262 ADSAASTVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATFNSGG 321

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           Q LY T   S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G        Y
Sbjct: 322 QQLYSTT-DSDGNVTVVPFNYGISLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT---Y 377

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ 
Sbjct: 378 QRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELV 437

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGF
Sbjct: 438 IIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGF 496

Query: 472 IYK 474
           IYK
Sbjct: 497 IYK 499


>gi|86748907|ref|YP_485403.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
 gi|86571935|gb|ABD06492.1| type II and III secretion system protein [Rhodopseudomonas
           palustris HaA2]
          Length = 479

 Score =  349 bits (894), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 164/481 (34%), Positives = 269/481 (55%), Gaps = 25/481 (5%)

Query: 6   RTFFTMMS-IFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKVIILQ 61
           R   T+       S+  ++  LPP     A+    +  + G     + +++G+ K +++ 
Sbjct: 8   RFIRTLTGTAMAVSAVVALTMLPPWTPVKASDYRATTTQTGGGMNARPLALGIGKSVVID 67

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+ 
Sbjct: 68  LPRDIKDVLVADPKIANAVVRSSQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDLN 127

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +   L++ I +++IRVE + D V+L G V T  ++Q+A +L+                +
Sbjct: 128 GIRAALQQSIPNADIRVEGLGDGVILMGSVATPIEAQQAADLAARLAGD----------A 177

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            KV+N + I G DQV LK+T+AEV+RDI+KQ+G   +   S      SF          +
Sbjct: 178 SKVVNNIAIRGRDQVMLKITVAEVQRDIVKQLGVDLTANLSYGTSVVSFTNTNPFTQSGQ 237

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G+       +  S    L A+E A  +RTLAEP LTAISG+ ASF +GG+    + 
Sbjct: 238 ALVSGNALTTSFGNGPSITATLKAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPSG 297

Query: 299 SSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSY 351
            + T      SV+   +GV+L+FTP VLS GRI L++ TEV    S+  + ++   +PS 
Sbjct: 298 VTCTNAVCTPSVSYKKFGVLLNFTPVVLSEGRISLKVATEVSEVSSDNSVTISGTTVPSI 357

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + R+ D+TVE+PSGG++ +AGL+++  +Q   G+P +++IPILG LFR+  +   ++E+ 
Sbjct: 358 KTRRVDSTVEIPSGGSLAMAGLIQEQTKQAINGMPGMTQIPILGTLFRSRDYINRQSELM 417

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG    +  + Q Y+G  GF
Sbjct: 418 VLVTPYVVRAVAPKDLSRPDDGFADASDPQSDLLGSINRIYGVPGRT-GQSQTYRGRFGF 476

Query: 472 I 472
           I
Sbjct: 477 I 477


>gi|86355864|ref|YP_467756.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
 gi|86279966|gb|ABC89029.1| pilus assembly secretion protein [Rhizobium etli CFN 42]
          Length = 498

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 225/498 (45%), Positives = 310/498 (62%), Gaps = 30/498 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPI-----KEANAAVINISDVEIGKGKKISIGLNK 56
           R  +      +S+ + ++  + A   P+       A  +++ IS       +++ +GLNK
Sbjct: 6   RRAKLLLTGCLSLAVGATGIAPASFGPLLVVNEARAAESLVRISQTGPDAHRRLKLGLNK 65

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI I
Sbjct: 66  AVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEVVNLDIEI 125

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           ERD++ LE  LRRFI DSNI+VE+VSD +VL G VRT QD+ +A +L++ FL        
Sbjct: 126 ERDVSGLETNLRRFIPDSNIKVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTR 185

Query: 177 ANSSS-----------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
             ++S                  +V+NLL I GEDQVTLKVTI EVRR++LKQ+GF +  
Sbjct: 186 TETASGTGGDSSVALFAEGRQTSQVVNLLQIQGEDQVTLKVTITEVRREVLKQLGFDNLV 245

Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            + +G +     S  AD     V  G     K  + ++   T L+ALE+A  +RTLAEPT
Sbjct: 246 SNSSGMTVAQLGSPNADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPT 305

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTAISGQ+A+F SGGQ LY T   + G  +V   +YG+ L F P VLS GRI L I+T V
Sbjct: 306 LTAISGQAATFNSGGQQLYSTT-DNNGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNV 364

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           SEPV G        Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG 
Sbjct: 365 SEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGT 421

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +E
Sbjct: 422 LFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRRE 481

Query: 457 ASEVEGQNYKGAIGFIYK 474
           A   + Q + G+IGFIYK
Sbjct: 482 APVADAQ-FHGSIGFIYK 498


>gi|91977985|ref|YP_570644.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
 gi|91684441|gb|ABE40743.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB5]
          Length = 480

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 158/482 (32%), Positives = 266/482 (55%), Gaps = 23/482 (4%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R L+ T   + ++   +  P++A +            + +  +   + +++G+ K +++
Sbjct: 10  IRTLKGTAMALSAVVALTLFPTLAPVQASDY-RDTPARMGNSGLN-ARPLALGIGKSVVI 67

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+
Sbjct: 68  DLPRDIKDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSTGQQIAAYDIAVTRDL 127

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   LR+ I +++I+VE + D V+L G V T  ++Q+A +L+                
Sbjct: 128 NGIRTALRQSIPNADIQVEGLGDGVMLIGSVATPIEAQQAADLAARLAGD---------- 177

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGK 237
           + KV+N + + G DQV LK+T+AEV+RDI+KQ+G   +     G+S     +        
Sbjct: 178 ASKVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLTASMNYGTSVVKFSNTNPFTQSG 237

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 +          S    L A+E A  +RTLAEP LTAISG+ ASF +GG+    +
Sbjct: 238 GPLVANNALTTSFGSGPSVSATLRAMESAGVVRTLAEPNLTAISGEPASFLAGGEFPVPS 297

Query: 298 VSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350
             + T      SVT   +GV+L+FTP VL+ GRI L++ TEVSE     +       +PS
Sbjct: 298 GVTCTNSLCTPSVTFKKFGVLLNFTPVVLTEGRISLKVSTEVSEVSSDNSIVIGGLSVPS 357

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+ ++TVE+PSGG++ +AGL+++  +Q   G+P ++++PILG LFR+  +   +TE+
Sbjct: 358 IKTRRIESTVEIPSGGSLAMAGLIQEQTKQAINGLPGMTQLPILGTLFRSRDYINRQTEL 417

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG    +    Q Y+G  G
Sbjct: 418 MVMVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGNINRIYGVPGRTGPA-QTYRGRFG 476

Query: 471 FI 472
           FI
Sbjct: 477 FI 478


>gi|39936740|ref|NP_949016.1| type II and III secretion system protein [Rhodopseudomonas
           palustris CGA009]
 gi|192292566|ref|YP_001993171.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
 gi|39650596|emb|CAE29119.1| putative exporter protein, cpaC [Rhodopseudomonas palustris CGA009]
 gi|192286315|gb|ACF02696.1| type II and III secretion system protein [Rhodopseudomonas
           palustris TIE-1]
          Length = 480

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 158/476 (33%), Positives = 260/476 (54%), Gaps = 23/476 (4%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   + +    +  PS   +       A V   S       + IS+G+ K +++ +P D+
Sbjct: 16  TAIALSAAVALTLIPSWTAVHASDYRAAPVPPASSGL--NAQSISLGIGKSMVIDLPRDI 73

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           +DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI + RD+  L   
Sbjct: 74  KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIVFFDSAGRQIAAYDIAVTRDLNGLRTA 133

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L++ + ++ I+VE + D V+L+G V +  D+Q+A +L+   + +           KKV+N
Sbjct: 134 LKQTLPNAEIQVEGLGDGVMLNGWVTSPIDAQQAYDLAVRLVGED----------KKVVN 183

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGG 243
            + + G DQV LK+T+AEV+RDI+KQ+G   S   +      +F                
Sbjct: 184 NIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNSNPFTQSGGPLVSS 243

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           +          S    L A+E A  +RTLAEP LTAISG+ A+F +GG+    +  + T 
Sbjct: 244 NALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGVTCTN 303

Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG----DMPSYRVRKA 356
                SVT   +G++L+FTP V++ GRI L++ TEVSE     +       +PS + R+ 
Sbjct: 304 GVCTPSVTFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNSVIISNMSVPSIKTRRV 363

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           ++TVE+PSGG++ +AGL+++  +Q   G+P  +++PILG LFR+  +   +TE+ +  TP
Sbjct: 364 ESTVEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMVLVTP 423

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           ++V+ VA +DLSRPDD ++   D ++     +NK+YG    +E   + Y+G  GFI
Sbjct: 424 YVVRAVAQKDLSRPDDGFADASDPQSDLLGSINKLYGVPGRTEPA-RTYRGRFGFI 478


>gi|190889881|ref|YP_001976423.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|190695160|gb|ACE89245.1| pilus assembly secretion protein [Rhizobium etli CIAT 652]
 gi|327194694|gb|EGE61540.1| pilus assembly secretion protein [Rhizobium etli CNPAF512]
          Length = 499

 Score =  348 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 225/487 (46%), Positives = 308/487 (63%), Gaps = 29/487 (5%)

Query: 12  MSIFLFSSNPSV-AKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    L  + EA A    +I I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPATFGPLLAVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
           RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 138 RRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197

Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF +   + +G +    
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLISNSSGMTVAQL 257

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            + +AD     V  G     K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F
Sbjct: 258 GTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATF 317

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SGGQ LY T   + G  +V   +YG+ L F P VLS GRI L I+T VSEPV G     
Sbjct: 318 NSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT 376

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+E
Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G
Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492

Query: 468 AIGFIYK 474
           +IGFIYK
Sbjct: 493 SIGFIYK 499


>gi|209551759|ref|YP_002283676.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537515|gb|ACI57450.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 499

 Score =  347 bits (890), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 221/487 (45%), Positives = 307/487 (63%), Gaps = 29/487 (5%)

Query: 12  MSIFLFSSNPSVAKL----PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           +++ +    P+           +  +  ++ IS       +++ +GLNK +++ +P D  
Sbjct: 18  LAVGISGIAPASFAPLLGSSEARADSENLVRISQTGRDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ L
Sbjct: 78  DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 137

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
            RFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 138 HRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197

Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF +   + +G +    
Sbjct: 198 SVALFAEGRQTSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 257

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S +AD     V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F
Sbjct: 258 GSPSADSATSVVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 317

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SGGQ LY T   S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G +   
Sbjct: 318 NSGGQQLYSTT-DSNGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSSGAT 376

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+E
Sbjct: 377 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 433

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G
Sbjct: 434 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 492

Query: 468 AIGFIYK 474
           +IGFIYK
Sbjct: 493 SIGFIYK 499


>gi|163733542|ref|ZP_02140985.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
 gi|161393330|gb|EDQ17656.1| type II/III secretion system protein, putative [Roseobacter
           litoralis Och 149]
          Length = 440

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 121/455 (26%), Positives = 213/455 (46%), Gaps = 24/455 (5%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
               A A  + I   E    + +++  N+ ++++  +   ++ +++P  AD+   S R++
Sbjct: 2   APLTAQAEALRIIARET--SETLNVSQNRAVVVESEIPFAELSIANPGIADISSLSDRSI 59

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ GK  G   + L+   G+ + N+++ +  D+   +  LR+ +    I V   +D +VL
Sbjct: 60  YVLGKVPGITTLTLLDAAGQLITNVEVRVAPDLTEFKERLRQILPGEAIEVRTANDGIVL 119

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + Q   +A+EL+  +            +  +V NL+ + G  QV LKV  AE+ R
Sbjct: 120 SGQVSSSQRLSKALELAARY------------APDRVSNLMTVGGVQQVMLKVRFAEMSR 167

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALER 265
            + KQ+     I G+ +               ++   G       L     + +L ALE 
Sbjct: 168 GVSKQLQSSLRIGGTEAQAGIGRGIGGIPNLAADTAQGAVFFDFGLGSTQVQLLLEALET 227

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
             A+RTLAEP L ++SGQ A+F +GG++       S    SV    +G+ L+F P V+  
Sbjct: 228 KGAVRTLAEPNLVSLSGQEANFLAGGEYPVPV--QSEDGISVDYKPFGIELNFVPRVVDG 285

Query: 326 GRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
             I L++    S            +  + ++  R+A TTVE+  G +  +AGLL+D+   
Sbjct: 286 DLINLQLSAATSSIDPSNGISVGDSFTVDAFIRREASTTVEMRDGESFAIAGLLEDNFND 345

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               +P LS +PILGALFR++ + R +TE+ I  T  LV P     L+ P D      + 
Sbjct: 346 NISQVPWLSDVPILGALFRSTDYMRNQTELVIIITAHLVTPTRGEALALPTDRIRPPSEK 405

Query: 441 KAFFFNR-VNKIYGPKEASEVEGQNYKGAIGFIYK 474
             F   R +  +     A EV  Q++ G+ G++ +
Sbjct: 406 DLFLNGRTIQTLNARGAAGEVAKQDFGGSYGYVME 440


>gi|294676059|ref|YP_003576674.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
 gi|294474879|gb|ADE84267.1| type II and III secretion system protein [Rhodobacter capsulatus SB
           1003]
          Length = 469

 Score =  347 bits (889), Expect = 3e-93,   Method: Composition-based stats.
 Identities = 124/470 (26%), Positives = 219/470 (46%), Gaps = 43/470 (9%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
                 A  + I          +++ +N+ ++++      ++ +++P  ADV   S +T+
Sbjct: 20  VTLPVAAETLRIVSGT--GSTPLAVPMNRAVVVESDQPFSELSIANPGIADVTTLSDKTI 77

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y+ GK  G+  + ++G DG  + N+++ +  DIA  +  L++ +   NI V   +D +VL
Sbjct: 78  YVLGKVPGRTTMTILGADGTLLSNVEVQVTPDIAEFKERLKQILPGENIEVRTANDGIVL 137

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +     RA++L+  +              ++V NL+N+ G  QV LKV  AE++R
Sbjct: 138 SGTVSSSAKLDRALDLARRYAG------------ERVSNLMNVGGTQQVMLKVRFAEMQR 185

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------------GDFSVK 248
            + K +    ++ G+  G +       G    +                     G   + 
Sbjct: 186 SVSKNLASSLAMRGTVGGGNAQTGVITGTGNFTATDAVGNAFDKGTMPISASTQGALGLG 245

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             +    F  +L ALE    +RTLAEP LTA+SGQ A F +GG++    V       ++ 
Sbjct: 246 FTVGNMEFGVLLEALESKGMVRTLAEPNLTALSGQQAKFLAGGEYPIPVV--DDDGITIE 303

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPS 364
              +GV + F P V+    I L I   VS       +  N   + +++ R+  TTVE+  
Sbjct: 304 YKPFGVEMSFIPRVVDGDLINLEIAAAVSAIDTSVTMTNNGTTVNAFKRRETSTTVEMRD 363

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G +  +AGLL+DD   L   IP L  +P+LG+LFR++ F R+++E+ I  TP LV P   
Sbjct: 364 GESFAIAGLLQDDFNDLNTQIPWLGDVPVLGSLFRSTAFERKQSELVIIITPHLVTPTHG 423

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             L+ P D   +  +++ F   +         A EV  Q++ G+ G++ +
Sbjct: 424 EALALPTDRIRLPSESELFLRGKTEG----GAAGEVARQDFSGSYGYVME 469


>gi|220922779|ref|YP_002498081.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947386|gb|ACL57778.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 494

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 151/472 (31%), Positives = 239/472 (50%), Gaps = 20/472 (4%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
                 A    +    A V+++   E    ++I +   + +++ +P D ++V V++P  A
Sbjct: 24  GLASPAAAQQRVPAMPAPVLSVGPQEADISRRIDLTQGRSLVVDLPRDAKEVFVANPKVA 83

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           + VV S R +++ G   G  ++ ++  +G+Q+  LD+ + RD+  L  TL   I      
Sbjct: 84  NAVVRSTRKVFIIGVENGATSIFVMDAEGRQIAALDVTVGRDLNVLRQTLASSIPKGRFE 143

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V    D+++L G V +  ++Q+A++++  F+   G       +    +N + I G+DQV 
Sbjct: 144 VRPAGDSILLSGSVNSAAEAQQAIDVANAFVGIGGGGVPGRGAV---INNITIRGKDQVM 200

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
           L+VT+ EV R +LKQ G   S   S+    + +  A  GG F                S 
Sbjct: 201 LRVTVVEVSRSVLKQFGVNLSGNWSNLNFANVAPLALNGGSFPIGNAISGSINFGGGASL 260

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVT 308
              L A E+A   R LAEPTLTAISG+SA FT+GGQ       + +           SVT
Sbjct: 261 TATLKAFEQAGVSRVLAEPTLTAISGESAKFTAGGQLPVPGNLACSAPSNGVQLCTPSVT 320

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTV 360
              YGV L FTP VLS  RI +R+ T+V+E     +           +P + VR ++TTV
Sbjct: 321 FKPYGVSLTFTPVVLSENRISIRVGTDVTEIDPQNSMNINFSGTTTAIPGFTVRTSETTV 380

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  TP++ K
Sbjct: 381 ELASGATMMTAGLIQQRNRAAITGLPALMNLPILGALFRSRDYQRDETELMIMVTPYIAK 440

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            +   ++ RPDD +    D +A    R N++YG   AS +  + Y G  GFI
Sbjct: 441 AMEPAEIKRPDDGFVDATDGQAVLLGRFNRLYGVVGASPLAPKAYHGRFGFI 492


>gi|89068017|ref|ZP_01155434.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
 gi|89046256|gb|EAR52313.1| Outer membrane general secretion pathway protein, Secretin
           [Oceanicola granulosus HTCC2516]
          Length = 482

 Score =  345 bits (886), Expect = 7e-93,   Method: Composition-based stats.
 Identities = 130/459 (28%), Positives = 216/459 (47%), Gaps = 43/459 (9%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              + + + +N+ ++++      +V +++P  AD+   S RT+Y+ GK  G+  + L+G 
Sbjct: 36  APSRALQVPMNRAVVVESDTPFTEVSIANPGIADISTLSDRTLYVLGKEPGRTTLTLLGA 95

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG+ + N+++ +  DI   +  L + +   +I V   ++ +VL G V +I    RA+EL+
Sbjct: 96  DGRLITNVEVQVTPDIDEFKERLAQILPGEHIEVRTAANGIVLSGTVSSIARLDRALELA 155

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           + +            +  +V NL+ + G  QV LKV  AE++R + K +    +  G++ 
Sbjct: 156 QRY------------APDRVSNLMTVGGVQQVMLKVRFAEMQRSVSKSLSSSLTARGTAL 203

Query: 225 GPSKSFAADFGG----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           G +    A  G                    +  G   +           +L ALE    
Sbjct: 204 GENLGLTAGTGTLTGNGAIGSALNGNVPAANANNGALLLGFNAGGVEIGMLLEALESRGV 263

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +RTLAEP LTA+SGQ A F +GG++    VS   G+ S+    +GV L+F P V+    I
Sbjct: 264 VRTLAEPNLTALSGQEARFLAGGEYPVP-VSQDGGSISIEYKPFGVELNFIPRVVDGDLI 322

Query: 329 GLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +Q  VS              + ++R R+  TTVE+  G +  +AGLL DD   L   
Sbjct: 323 NLELQASVSSIDPTNGFVQGGFSIDAFRRRETSTTVEMRDGESFAIAGLLSDDFIDLNSQ 382

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P +  IP+LGALFR++ + R +TE+ I  TP LV P     L+ P D      +   F 
Sbjct: 383 LPFVGDIPVLGALFRSAEYERNQTELVIIVTPHLVTPTRGEALALPTDRVRPPSERDLFL 442

Query: 445 FNRVNKIYGPK----------EASEVEGQNYKGAIGFIY 473
           F RV    G             A+EV  Q++ G+ G++ 
Sbjct: 443 FGRVTAPDGSPIPSSSAPQSGAAAEVARQDFSGSYGYVL 481


>gi|83950066|ref|ZP_00958799.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
 gi|83837965|gb|EAP77261.1| bacterial type II/III secretion system protein [Roseovarius
           nubinhibens ISM]
          Length = 429

 Score =  345 bits (885), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 131/441 (29%), Positives = 213/441 (48%), Gaps = 34/441 (7%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ I+++  V   ++ V++ + AD    S RT+YL GK  G+  + L+   G+ + N++
Sbjct: 1   MNRAIVVESDVPFAELSVANASIADFSTLSDRTIYLLGKAPGRTTLTLLDEAGRLITNVE 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I +  DI+  +  LR+ + +  I V   +D +VL G+V +    QRA++L++ +      
Sbjct: 61  IHVSADISEFKERLRQILPNEKIEVRTANDGIVLSGVVSSTPRMQRALDLAQRY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                 + ++V NL++++G+ QV LKV  AE++R + K +G    I G S+       + 
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKSLGTSLFIDGLSNAGIGGAIST 168

Query: 234 FG---------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            G               G   +  G   +           ++ ALE    +RTLAEP LT
Sbjct: 169 NGIGSSAQTPVGVQPGTGTAGTNNGAAFIGLNAGSAQVGILIQALESKGLVRTLAEPNLT 228

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQ A+F +GG++    V+   GA +V    +GV L+F P VL    I L I   VS 
Sbjct: 229 ALSGQEANFLAGGEYPIP-VAQEEGAIAVEFKPFGVQLNFVPYVLDDEVINLEIAAAVSS 287

Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +  +R R   TTV L  G +  +AGLL+DD +     +P L  +PIL
Sbjct: 288 IDPSNGYSDGTITIAGFRTRSTSTTVSLRDGDSFAIAGLLQDDFEDTNGQVPWLGDLPIL 347

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK--IY 452
           GALFR++ + R +TE+ I  T  LV P     L+ P D      +A  F   RV +    
Sbjct: 348 GALFRSANYQRSQTELVIIVTAHLVTPTRGEALALPTDRVLPPSEADLFLNGRVARQVRN 407

Query: 453 GPKEASEVEGQNYKGAIGFIY 473
                 EV  Q++ G+ G++ 
Sbjct: 408 SKGSVGEVAKQDFNGSYGYVM 428


>gi|75674499|ref|YP_316920.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
 gi|74419369|gb|ABA03568.1| type II and III secretion system protein [Nitrobacter winogradskyi
           Nb-255]
          Length = 493

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 161/489 (32%), Positives = 262/489 (53%), Gaps = 35/489 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIILQVPVDV 66
               ++     +    A L P+  ++  V   +        + +S+G+ K +++ +P DV
Sbjct: 14  VARSLAFAAIGAFTLDAALTPVFASDYRVSGAATAGANMHAQSLSLGIGKSVVVDLPRDV 73

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           +DVLV+DP  A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L   
Sbjct: 74  KDVLVADPKIANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRTA 133

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L++ + ++ I+V+ + D V+L G V    ++Q+A +L+                ++KV+N
Sbjct: 134 LKQLLPNAAIKVDGLGDGVMLSGWVSNPIEAQQAGDLAARLTDG----------AQKVVN 183

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAADFGGK 237
            + + G DQV LKVT+AEV R ++KQ+G   S            +++ P  +        
Sbjct: 184 NIAVRGRDQVMLKVTVAEVARTVIKQMGIDLSASMNYGTAVVNFTNANPFTALGRPLTNN 243

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +     ++ G     +    L A+E A  IRTLAEP LTAISG+SA+F SGG+     
Sbjct: 244 SAAASFGSTMVGGAPVPAVTATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPA 303

Query: 298 VSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--------- 343
             S   AT V         +G+ L+FTP VL+ GRI LR+ TEVSE              
Sbjct: 304 GFSCDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSNENSMTLNQSVG 363

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N+  +PS R R+A+TT+E+PSGG++ +AGL+    +Q+  G+P ++++P+LGALFR+  +
Sbjct: 364 NSLTVPSIRTRRAETTLEIPSGGSMAMAGLIHQQTKQVINGLPGIAQVPVLGALFRSRDY 423

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
              +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG     E   +
Sbjct: 424 VNGQTELMVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNRIYGAPGRVEPA-R 482

Query: 464 NYKGAIGFI 472
           +Y+G  GFI
Sbjct: 483 HYRGTYGFI 491


>gi|259417373|ref|ZP_05741292.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
 gi|259346279|gb|EEW58093.1| type II and III secretion system protein [Silicibacter sp.
           TrichCH4B]
          Length = 442

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 217/445 (48%), Gaps = 30/445 (6%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + +N+ ++++  V   ++ +++P  AD+   S RT+Y+ GK+ G   + L+  
Sbjct: 11  GTNAVLDVPMNRAVVVEADVPFAELSIANPGIADISSLSDRTIYVLGKSPGMTTLTLLDG 70

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G  + N+D+ +  D++  +  L++ + +  I V   +D +VL G V + Q  QRA++L+
Sbjct: 71  SGGLITNVDVRVAADVSEFKQRLQQILPNEKIEVRTANDGIVLSGTVSSAQRLQRALDLA 130

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           E +            +  +V NL+ + G  QV LKV  AE+ R + K +G    I  S  
Sbjct: 131 ERY------------APDRVSNLMTVGGIQQVMLKVRFAEMERSVSKSLGGSMLIGSSDG 178

Query: 225 GPSKSFAAD---FGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
             S     +    GG F ++          G       +    F  +L ALE+   +RTL
Sbjct: 179 NVSTGTFLNRPEGGGVFGTDSPVNLKADTLGAAIFGFDIGAVQFNVLLEALEQKGLVRTL 238

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           AEP L+A+SGQ ASF +GG++    V+   G  +V    +G+ L+F P V+    I L +
Sbjct: 239 AEPNLSALSGQEASFLAGGEYPVP-VAQEEGVVTVEFKPFGIELNFIPRVVDGDLINLEL 297

Query: 333 QTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  VS          +   + ++  R+  TTVEL  G +  +AGL++D+ +     +P L
Sbjct: 298 KAAVSAIDTTNAATFDGFSINAFSRRETATTVELRDGESFAIAGLIEDEFRDGAAQVPWL 357

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             +P+LGALFR++ + R ++E+ I  +  LV P     L+ P D      +   F F R 
Sbjct: 358 GDVPVLGALFRSADYERNQSELVIIVSAHLVTPTRGEALALPTDRIRPPSEKNLFLFGRT 417

Query: 449 NKIYGPKEASEVEGQNYKGAIGFIY 473
            +      A EV  Q++ G+ G++ 
Sbjct: 418 ERAQ-SGAAGEVANQDFNGSYGYLL 441


>gi|148258235|ref|YP_001242820.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146410408|gb|ABQ38914.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 497

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 163/491 (33%), Positives = 266/491 (54%), Gaps = 31/491 (6%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R       +  +    + NP++A +       A     +D +I   + +++G+ K +++
Sbjct: 17  LRTAMVRALSFSAAAALTLNPALAPVIAADYHPAVTAAAADGQIN-ARFLALGVGKSVVI 75

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D++DVLV+DP  A+ VV S +  Y+ G  VGQ N++     G+Q+   DI ++RD+
Sbjct: 76  DLPRDIKDVLVADPKIANAVVRSSQRAYIIGATVGQTNIVFFDAQGQQIAAYDIAVKRDL 135

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                 L++ + +S+I++E + D++VL G   +  ++Q+A EL+                
Sbjct: 136 NGARAALKQLLPNSDIQIEGLGDSIVLSGSAASQIEAQQAGELAARLAGG---------- 185

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFV 239
           + KV+N + + G DQV LKVT+AEV+R ++KQ+G   S   +       F  ++    + 
Sbjct: 186 ADKVVNSITVRGRDQVMLKVTVAEVQRSVVKQLGIDLSGQLNYGTAVVKFANSNPFTAYG 245

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S     +        S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+       
Sbjct: 246 SNLVSNNAINASFGSSVQATLRAMENAGVIRTLAEPNLTAISGESATFIAGGEFPVPAGY 305

Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------------- 341
           S    T V         +G+ L+FTP VL+ GRI LR+ TEVSE                
Sbjct: 306 SCDPTTHVCTTQISFKKFGISLNFTPVVLAEGRISLRVMTEVSELSNENSITLSQAVTSS 365

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            VN+  +PS + R+A+TT+E+PSGG + +AGL++   +Q   G+P L ++P+LG LFR+ 
Sbjct: 366 TVNSLTVPSIKTRRAETTLEIPSGGAMAMAGLIQQQTKQAISGMPGLMQLPVLGTLFRSR 425

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            +   +TE+ +  TPF+V+ VA +DLSRPDD ++   D +A     +N+IYG     E  
Sbjct: 426 DYVNNQTELMVLVTPFVVRAVAQKDLSRPDDGFAAASDRQADLLGSINRIYGVPGRVEP- 484

Query: 462 GQNYKGAIGFI 472
           G++Y+G  GFI
Sbjct: 485 GRSYRGTYGFI 495


>gi|170740621|ref|YP_001769276.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
 gi|168194895|gb|ACA16842.1| type II and III secretion system protein [Methylobacterium sp.
           4-46]
          Length = 501

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 145/460 (31%), Positives = 243/460 (52%), Gaps = 16/460 (3%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
           +        A V++I   E    ++I +   + +++ +P D ++V V++P  A+ VV S 
Sbjct: 44  RAEKAPAIAAPVLSIGPQEAEIARRIDLTQGRSLVIDLPRDAKEVFVANPKVANAVVRST 103

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           R +++ G   G  ++ ++  +G+Q+ +LD+ + RD+  L  TL   +  +   V    D+
Sbjct: 104 RKVFIIGVENGATSIFVMDAEGRQIASLDVTVGRDLNILRQTLATSLPSARFEVRPAGDS 163

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           ++L G V +  ++Q+A++++  F+           +   V+N + I G+DQV L+VT+ E
Sbjct: 164 ILLSGTVNSATEAQQALDIANAFVG----IAGGTVTRGAVINNITIRGKDQVMLRVTVVE 219

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V R +LKQ G   S + S    + +      G                  S +  L A E
Sbjct: 220 VSRTVLKQFGVSLSGSWSGLNLTNATQFALNGDRGLGNLIEGTINGGAGASLKATLKAFE 279

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTP 320
           +A   R LAEPTLTAISG+SA FT+GG+    +  S    +     +T   YGVVL+FTP
Sbjct: 280 QAGVSRILAEPTLTAISGESAKFTAGGEIAVPSGLSCTTANNCIPGITFKQYGVVLNFTP 339

Query: 321 TVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            VLS  RI +R+ T+V+E           G  +  +P + +RK++TT+EL SG TI+ AG
Sbjct: 340 VVLSENRISIRVGTDVTEIDQQNAYSYNIGTTSTSVPGFTIRKSETTIELASGATIMTAG 399

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++   +    G+P L  +P+LGALFR+  + R+ETE+ I  TP++ K +   ++ RPDD
Sbjct: 400 LIQQKNKAAVMGLPALMNLPVLGALFRSRDYQRDETELMIMVTPYIAKAMDPGEVKRPDD 459

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
            +    D +A    R N++YG   A+ +  + Y+G  GFI
Sbjct: 460 GFVDATDGQAILLGRFNRLYGVVGAAPLAPKAYRGKFGFI 499


>gi|116249981|ref|YP_765819.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254629|emb|CAK05703.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 501

 Score =  345 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 223/487 (45%), Positives = 309/487 (63%), Gaps = 29/487 (5%)

Query: 12  MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    +      +  + +++ IS       +++ +GLNK +++ +P D  
Sbjct: 20  LAIGVSGMVPASFATLFAAGEARADSDSLVRISQTGSNAHRRLKLGLNKAVVVDLPEDAH 79

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE+ L
Sbjct: 80  DILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVNLDIEIERDVSGLEVNL 139

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
           RRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 140 RRFIRDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 199

Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPS 227
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF +   + +G +    
Sbjct: 200 SVALFAEGRQSSQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSSGMTVAQL 259

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S +AD     V  G     K  + ++   T L+ALE+A  ++TLAEPTLTAISGQ+A+F
Sbjct: 260 GSPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVKTLAEPTLTAISGQAATF 319

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            SGGQ LY T   S G  +V   +YG+ L F P VLS GRI L+I+T VSEPV G     
Sbjct: 320 NSGGQQLYSTT-DSDGNVTVVPFNYGINLAFKPVVLSSGRISLQIKTNVSEPVAGSGNAT 378

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+E
Sbjct: 379 ---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQE 435

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G
Sbjct: 436 TELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHG 494

Query: 468 AIGFIYK 474
           +IGFIYK
Sbjct: 495 SIGFIYK 501


>gi|85705151|ref|ZP_01036251.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
 gi|85670473|gb|EAQ25334.1| bacterial type II/III secretion system protein [Roseovarius sp.
           217]
          Length = 428

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 123/440 (27%), Positives = 208/440 (47%), Gaps = 33/440 (7%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +N+ ++++      ++ +++P  AD    S RT+Y+ GK  G+  + L    G+ + N+D
Sbjct: 1   MNRAVVVESDSPFAELSIANPAIADFSTLSDRTIYVLGKTPGRTTLSLFDGAGQLITNID 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           + +  DI   +  L++ +    I V   +D +V+ G V +    QRA++L+E +      
Sbjct: 61  VHVSTDIEEFKERLKQILPGEPIEVRSANDGIVISGTVSSSSRMQRALDLAERY------ 114

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                 + ++V NL++++G+ QV LKV  AE++R + K +    SI    +     F   
Sbjct: 115 ------APERVSNLMSVSGKQQVMLKVRFAEMQRSVSKALSTSLSIDARGANQVGVFGGT 168

Query: 234 FGGKFVS---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                +                  G F+    +       +L ALE    +RTLAEP LT
Sbjct: 169 NTTNTLGGVLGSTAGTIPGANDNNGVFNFGFDVGSVEVGILLEALETKGVVRTLAEPNLT 228

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQ A F +GG+     V+     T+V    +GV L+F P V+  G I L +   VS 
Sbjct: 229 ALSGQEAKFLAGGEFPVP-VAQDNDTTTVEFKPFGVELNFVPRVVDDGIINLEMAAAVSS 287

Query: 339 PVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                +       +P++R R   TTV L  G +  +AGLL+DD +     +P L  +P+L
Sbjct: 288 IDTSNSLVSDGFSIPAFRRRDTSTTVALRDGESFAIAGLLQDDFRDNAGQVPWLGDVPVL 347

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV-NKIYG 453
           GALFR++ + R +TE+ I  +  LV P     L+ P D   +  +   F   RV N +  
Sbjct: 348 GALFRSADYQRSQTELVIIVSAHLVSPSRGEALALPTDRVKLPSEKDLFLNGRVANGVSD 407

Query: 454 PKEASEVEGQNYKGAIGFIY 473
                EV  Q++ G+ G++ 
Sbjct: 408 RGAVGEVAKQDFTGSYGYVM 427


>gi|254475652|ref|ZP_05089038.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
 gi|214029895|gb|EEB70730.1| type II and III secretion system protein:Transport-associated
           [Ruegeria sp. R11]
          Length = 452

 Score =  344 bits (883), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 122/465 (26%), Positives = 223/465 (47%), Gaps = 33/465 (7%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +P  + A A  + +     G    + + +N+ ++++  V   ++ +++P+ AD+   S R
Sbjct: 3   MPSAQGAWAEGLRVVKK--GTSSNLEVPMNRAVVVESDVPFSELSIANPSIADISSLSDR 60

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
           T+Y+ GK+ G  +    G  G+ + N+D+ +  D++  +  LR+ +    I V   +D +
Sbjct: 61  TIYVLGKSPGPDHPHAFGCVGRLITNVDVRVAADVSEFKERLRQILPGEKIEVRTANDGI 120

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G+V +    QRA++L+E +            +  +V NL+++ G  QV LKV  AE+
Sbjct: 121 VLSGVVSSSARLQRALDLAERY------------APDRVSNLMSVGGVQQVMLKVRFAEM 168

Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +R + K +     + G             ++ G   +             G F       
Sbjct: 169 QRTVSKSLSASLGVNGGNSVGVNGGTSTLNTQGALTNSLTGNIPAANDNTGAFVFGFNAG 228

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            F    +L ALE+   +RTLAEP L+A+SGQ A F +GG++    V+   G  ++    +
Sbjct: 229 AFQVNLLLEALEQKGVVRTLAEPNLSALSGQEAKFLAGGEYPIP-VAQEDGVITIEFKPF 287

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTI 368
           G+ L+F P V+    I L ++  VS          N   + ++  R++ TTVE+  G + 
Sbjct: 288 GIELNFIPRVVDADVINLEMKAAVSAIDPTNSIELNGLSIAAFSRRESVTTVEMRDGESF 347

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            +AGL++D+ +     +P +  +P+LG+LFR++ + R +TE+ I  +  LV P     LS
Sbjct: 348 AIAGLIRDEFRDNSSQLPWIGDVPVLGSLFRSANYQRAQTELVIIVSAHLVTPTRGEALS 407

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            P D      +   F F  V +      ASEV  Q++ G+ G++ 
Sbjct: 408 LPTDRIRPPSETDLFLFGNVAR-ERKGPASEVAKQDFNGSYGYVL 451


>gi|110636321|ref|YP_676529.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110287305|gb|ABG65364.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 516

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 191/495 (38%), Positives = 277/495 (55%), Gaps = 50/495 (10%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P I  + A    + +V     +++ +GLNK ++L +P D  D+LV++P  AD V  + R 
Sbjct: 25  PVIIPSAARGEGVIEVSGAGTERLKLGLNKTLVLDLPSDAYDILVANPAVADAVTRTARR 84

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           +YLFGK VG+ N+ + G  G+Q+  +D+ +ERD+A LE  L+RFI +SNI VE+++D VV
Sbjct: 85  IYLFGKQVGETNIFVFGAGGEQIARIDVAVERDVAGLEQYLKRFIPNSNIDVELINDNVV 144

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQY---------------------ANSSSKKVM 185
           L G V T  D+ RA +L+  F++                            +     K++
Sbjct: 145 LTGTVETPLDASRAAQLATIFVTGGEATTGQYSQTAAAPTDGGGVAISNPDSARQVSKIV 204

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N+L I GEDQVTLKVT+AEV R ++KQ+G     +GS  G S     D      +     
Sbjct: 205 NMLQIIGEDQVTLKVTVAEVSRSVMKQLGVNMIGSGSLDGISWGAIVDSPYGLGAPASAS 264

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----------- 294
            +   L     +  L+A+E+A  ++TL+EPTLTAISG+ A+F  GG+             
Sbjct: 265 QLA--LGGSLLQGYLNAMEQAGVMKTLSEPTLTAISGEKATFKVGGEFNLVTGQKVEQGD 322

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344
                +      V   DYG+ L FTPTVLSPGRI L+++T VSEP    +          
Sbjct: 323 ASKGQADQLTYEVEKIDYGIGLEFTPTVLSPGRISLKVRTSVSEPTFEGSFSLGSPSIGG 382

Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                  +  S R R ADTTVELPSGG++++AGL++DD++Q   G+P LSKIPILG LFR
Sbjct: 383 RFNSPGMNALSIRKRLADTTVELPSGGSMMIAGLVRDDVRQTINGLPGLSKIPILGTLFR 442

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           +  F R ETE+ I  TP+L +PVA   L+RPDD+++   D    F  RVN+IYG  + + 
Sbjct: 443 SRDFVRNETELVIIITPYLARPVARTALARPDDNFNPPSDGAGIFLGRVNRIYGAMKTNL 502

Query: 460 VEGQNYKGAIGFIYK 474
            +G+ Y G +G+IYK
Sbjct: 503 PKGR-YHGVVGYIYK 516


>gi|90419764|ref|ZP_01227673.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
 gi|90335805|gb|EAS49553.1| Flp pilus assembly protein, secretin CpaC (type II and type III
           secretion system) [Aurantimonas manganoxydans SI85-9A1]
          Length = 540

 Score =  344 bits (883), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 190/535 (35%), Positives = 279/535 (52%), Gaps = 70/535 (13%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R   R    +M+    +  P    LP   +A   V+N+        + I++GLNK  ++
Sbjct: 15  LRARLRKLVVVMAAASTALAPLATTLP--AQAEQTVVNVRQG----SQSINLGLNKTKVI 68

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +  D  D+LV++P  AD V    R +Y+FGK +GQ N+++     +Q+ ++D+ IERDI
Sbjct: 69  VLEADAHDILVANPAVADAVTRDARRIYIFGKQIGQTNIVVFDRQNRQIASIDLKIERDI 128

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY---- 176
             LE T+R+++  S ++VEM++D VVL+G V+T QD+ +   L+  F++           
Sbjct: 129 NGLEATIRKYVPSSVVQVEMLNDNVVLNGTVQTPQDAAKVERLARLFVTGGEGTTGQYIQ 188

Query: 177 -------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                               +    +++NLL I GEDQVTLKVT+AEV+R ++KQ+G   
Sbjct: 189 QATASGGAGGGDGDVGFAQEDRRQSQIVNLLQIQGEDQVTLKVTVAEVQRSVVKQLGINS 248

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +     +          G    S     +  G +  F     L+A+E+A  +RTLAEP+L
Sbjct: 249 TAGKGVTYGQTDSPFALGKALSS--SMLASAGSIGGFDITAQLNAMEQAGVMRTLAEPSL 306

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV-----------------------------T 308
           TAISG+ ASF  GG+       S    T                               T
Sbjct: 307 TAISGEKASFKVGGEFTVPDAQSYDPGTPARREFQGYDGSGQAIYDTIPAEPPTRSIDKT 366

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMPSYRVRKADTT 359
             +YG+ L FTP VLSPGRI L+I+T VSEP                     R R ADTT
Sbjct: 367 RVEYGIGLDFTPVVLSPGRISLKIRTAVSEPTFEMPFNISGGKDGGVGTVGIRKRLADTT 426

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VELPSGG++V+AGL++D+++Q+  G P LSKIP+LG LFR+  F R ETE+ I  TP+LV
Sbjct: 427 VELPSGGSLVIAGLVRDEVRQVMSGFPGLSKIPVLGTLFRSRDFQRYETELVIIVTPYLV 486

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +PV  + L+RPDD +++  D  A F  RVN++YG  E     G+ Y G +GFIYK
Sbjct: 487 RPVPRQALARPDDGFALSSDGAANFLGRVNRVYGHMETKLPPGR-YHGVVGFIYK 540


>gi|299132286|ref|ZP_07025481.1| type II and III secretion system protein [Afipia sp. 1NLS2]
 gi|298592423|gb|EFI52623.1| type II and III secretion system protein [Afipia sp. 1NLS2]
          Length = 490

 Score =  343 bits (879), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 162/482 (33%), Positives = 259/482 (53%), Gaps = 23/482 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK--GKKISIGLNKVIILQVPVD 65
               +S    S+    + L P+   +  V + S         + + +G++K +++ +P D
Sbjct: 13  IARALSFVAVSALILNSSLSPVLATDYQVASASTASADSLNARSLRLGISKSLVVDLPRD 72

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V+DVLV+DP  A+ VV S R  Y+ G  VGQ N+I    DG+QM   D+ + RD+  +  
Sbjct: 73  VKDVLVADPKIANAVVRSSRRAYIIGAAVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRT 132

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            + + +  S+I+VE + D VVL G      ++Q+A EL+   +         + ++  V+
Sbjct: 133 AIHQALPQSDIQVEGLGDGVVLTGSAANQAEAQQAYELAARLIGGP------SKANDLVV 186

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EG 242
           N + + G DQV LKVT+AEV+R+I+KQ+G   S   S       F        +      
Sbjct: 187 NNITVRGRDQVMLKVTVAEVQRNIVKQLGVDLSGKFSYGTAVVDFNNANQFSALGHALAP 246

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---- 298
            +          S +  L A+E A  +RTLAEP LTAISG+SA+F +GG+    T     
Sbjct: 247 DNAISTSFGSAPSVKATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPIPTGITCQ 306

Query: 299 ----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPS 350
               +SS    S+    +G+ L+FTP VL+ GRI LR+ TEVSE        V+   +PS
Sbjct: 307 TAAGTSSNCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEISNDNSLTVSGMTIPS 366

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LG LFR+  F   +TE+
Sbjct: 367 IKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLAQLPVLGTLFRSRDFINNQTEL 426

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            +  TP++V+ VA +DLSRPDD ++   D +      + +IYG          +Y+G  G
Sbjct: 427 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQTVLLGNITRIYGVPRREGQASSSYRGKYG 486

Query: 471 FI 472
           FI
Sbjct: 487 FI 488


>gi|85713505|ref|ZP_01044495.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
 gi|85699409|gb|EAQ37276.1| type II and III secretion system protein [Nitrobacter sp. Nb-311A]
          Length = 477

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 163/486 (33%), Positives = 260/486 (53%), Gaps = 41/486 (8%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
             +      L P+  ++  V   +       + +S+G+ K +++ +P DV+DVLV+DP  
Sbjct: 1   MGAFTLNPALAPVFASDYRVSAATTGAKMHTQSLSLGIGKSVVVDLPRDVKDVLVADPKI 60

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           A+ VV S +  Y+ G  VGQ N+I     G+Q+   DI + RD+  L   L++ + ++ I
Sbjct: 61  ANAVVRSAQRAYIIGAAVGQTNIIFFDSSGQQISAYDIAVTRDLNGLRAALKQLLPNAAI 120

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +V+ + D V+L G V +  ++Q+A +L+                 +KV+N + + G DQV
Sbjct: 121 KVDGLGDGVMLSGWVSSPIEAQQAGDLAARLADGV----------QKVVNNIAVRGRDQV 170

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVLDRF 254
            LKVT+AEV R I+KQ+G   S   +      +F+    F           ++ G     
Sbjct: 171 MLKVTVAEVARTIIKQMGIDLSANMNYGTAVVNFSNSNPFTALGRPLVSGNNLSGSAGLT 230

Query: 255 SF--------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           +               +  L A+E A  IRTLAEP LTAISG+SA+F SGG+       S
Sbjct: 231 NLLPGQAGYPGVVPSVQATLRAMESAGVIRTLAEPNLTAISGESATFISGGEFPIPAGYS 290

Query: 301 STGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAG 346
              AT V         +G+ L+FTP VL+ GRI LR+ TEVSE              N+ 
Sbjct: 291 CDPATRVCLTQIRFKKFGISLNFTPVVLTEGRISLRVMTEVSELSTENAMTITQTIGNSL 350

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LGALFR+  +   
Sbjct: 351 TVPSIRTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGLTQLPVLGALFRSRDYVNG 410

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           +TE+ +  TP++V+ VA +DLSRPDD ++   D ++     +N+IYG     E   ++Y+
Sbjct: 411 QTELVVLVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSINRIYGAPGRVEPA-RHYR 469

Query: 467 GAIGFI 472
           G  GFI
Sbjct: 470 GTYGFI 475


>gi|302037439|ref|YP_003797761.1| putative pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
 gi|300605503|emb|CBK41836.1| putative Pilus assembly protein CpaC [Candidatus Nitrospira
           defluvii]
          Length = 485

 Score =  342 bits (878), Expect = 6e-92,   Method: Composition-based stats.
 Identities = 135/487 (27%), Positives = 220/487 (45%), Gaps = 41/487 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L      +  L  +  A A  +   D++    + +S+   K ++L  P+      +++P
Sbjct: 11  TLRGIGSGLFALFLVTVAQAHEVASPDIQTRVPRSLSLITGKSLVLDSPIPFSRASIANP 70

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             AD +V SP+ +Y+ GK  G  N+ L   +G      D+ +  D+  L+  L +   D 
Sbjct: 71  DIADTLVLSPKQLYVIGKAAGTTNLTLWDAEGSVYALYDLAVSPDLTRLKEHLHQLFPDE 130

Query: 135 N-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           N ++V    D + L G V +      AV+++ET+            + +KV+NLL + G 
Sbjct: 131 NDLQVMAAHDRLTLTGTVSSATHVSEAVDVAETY------------ARQKVINLLRVGGL 178

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----------------PSKSFAADFGG 236
            QV L+V +AE+ R +L+++G   +                        PS +  A   G
Sbjct: 179 HQVMLEVRVAEMERTLLRRLGVNLAAASGGQSFGVSSLKNLATVLPPTDPSAALVAGPVG 238

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             VS+  +  ++      S+   + AL+    ++ LAEPTL A+SGQ A F +GG+    
Sbjct: 239 LGVSQAVNALLRFQTGSTSWTGFIDALKEENLVKVLAEPTLVALSGQEAHFLAGGEFPIP 298

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYR 352
            V  + G T++    +G+ L+F P VLSP RI + +  EVS+             +P+  
Sbjct: 299 -VPQAFGVTTIQFKKFGIQLNFNPVVLSPTRISVTVAPEVSDLDFANGLSLQGFVVPAIT 357

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T VEL  G +  +AGLL+D +++     P+L  IPILGALFR+S F + ETE+ I
Sbjct: 358 TRRASTVVELEDGQSFAVAGLLRDTVRETVSKFPVLGDIPILGALFRSSSFQKNETELVI 417

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG------QNYK 466
             TP LV PV   +L  P   Y   DD   +   R+                        
Sbjct: 418 IVTPHLVTPVTEAELPLPTGQYLEPDDVDFYLMGRLQSRKDKVRTPLPPATQLPFEDRLA 477

Query: 467 GAIGFIY 473
           G +G + 
Sbjct: 478 GPVGHMM 484


>gi|157375508|ref|YP_001474108.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
 gi|157317882|gb|ABV36980.1| flp pilus assembly protein, secretin CpaC [Shewanella sediminis
           HAW-EB3]
          Length = 483

 Score =  342 bits (876), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 200/435 (45%), Gaps = 20/435 (4%)

Query: 42  VEIGKGKKIS-IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              G  + I  I + K  +L++   +  V V +P   D+ +     +Y+ GK +G  N++
Sbjct: 31  GPTGASRDIKHIPIFKSRVLKLKQAIHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + +  +DI I  D+  L+  L  F+    + V+     +++ G    +Q    A
Sbjct: 91  VWDKNEQLVDVIDIEITHDLNGLKTRLHEFLPGEKLGVQTSQGQLLISGQASNLQKMNTA 150

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           VEL++ +   +      +     V+N++ + G+ QV L+V IAEV++++ +Q   +  I 
Sbjct: 151 VELAQAYADAASV----SKVKSTVLNMMTVGGDHQVMLEVVIAEVQKEVARQFDSKFFIF 206

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
                     A   G   +        +G               L   ++    + LAEP
Sbjct: 207 NKGDKGFIGTAGAGGTFDLDPAAAIDSRGFFARYLDGNLMMNFALDVAKQHGLAKVLAEP 266

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +TA+SGQSA F SGG+     V  + G+T++   D+GV + F P+VL  G+I L +   
Sbjct: 267 NVTAMSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVKFVPSVLDSGQINLNLNVM 325

Query: 336 VSEPVIGVNAG---------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE     +            +PS   R   TTVEL  G TI ++GL+ D +++  + +P
Sbjct: 326 VSEVSNANSVTLSGGSNTALVVPSIVKRTTATTVELADGQTIAISGLISDTLRENIDKLP 385

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  IPILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +   
Sbjct: 386 GLGDIPILGQLFTSKSFQSGQSELVILVTPRLVRPFNKKQISLPTDDFVLPSDMEFYLLG 445

Query: 447 RVNKIYGPKEASEVE 461
           +++     +E  E  
Sbjct: 446 KMSHKQSEQEKHETP 460


>gi|89053488|ref|YP_508939.1| type II and III secretion system protein [Jannaschia sp. CCS1]
 gi|88863037|gb|ABD53914.1| type II and III secretion system protein [Jannaschia sp. CCS1]
          Length = 466

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 134/461 (29%), Positives = 224/461 (48%), Gaps = 29/461 (6%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
            PI  A A  + + + E      + + +N+ ++++  +   ++ V++P  AD+   S R+
Sbjct: 20  QPISGAQAQGLRVVEGE--STGTLRVPMNRAVVVEAEMLFAELSVANPAIADIATLSERS 77

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           +Y+ G+  G+  + L+G DG  + N++I +  D+A L   LR  I    + V   +D +V
Sbjct: 78  IYVLGRAPGRTTMTLLGADGSLIANVEIQVVPDVAELRERLREIIPGEPVEVRTANDGIV 137

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G V +     RA+EL+E +            +  ++ NL+ + G+ QV L+V  AE++
Sbjct: 138 LSGTVGSAFAVDRAMELAERY------------APGRISNLMMVGGQQQVMLQVRFAEMQ 185

Query: 207 RDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           R + +++     I             G+  G +     +  G      G   V       
Sbjct: 186 RTVRQELSASLGIGSTGGNFGTSVGAGNLQGGTGFGTGNLPGGLDGRNGGIGVSFAAGGL 245

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
               +L ALE    +RTLAEP LTA+SG +ASF +GGQ    T S S G T +   D+GV
Sbjct: 246 QLSVLLEALESNGMVRTLAEPNLTALSGATASFLAGGQFPVPTESESGGTT-IEFVDFGV 304

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L FTPTV+    I L +  E+S     +     P+   R A T VE+  G +  +AGLL
Sbjct: 305 QLDFTPTVVGDHVINLALDAEISSIGEIIATTGAPAINTRNASTVVEMRDGDSFAIAGLL 364

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +DD       +P L  +P+LGALFR++ ++R ++E+ I  T  LV PV    L+ P D  
Sbjct: 365 QDDFTNSVAEVPWLGDLPVLGALFRSASYSRSQSELVIIITAHLVSPVNGEALALPTDRV 424

Query: 435 SVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGFIY 473
            +  +++ FF  +V          A +V  Q++ G+ G++ 
Sbjct: 425 RIPTESELFFQGQVTGSSPRPGTAAGDVAQQDFSGSYGYVL 465


>gi|118589703|ref|ZP_01547108.1| pilus assembly protein [Stappia aggregata IAM 12614]
 gi|118437789|gb|EAV44425.1| pilus assembly protein [Stappia aggregata IAM 12614]
          Length = 483

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 172/473 (36%), Positives = 273/473 (57%), Gaps = 18/473 (3%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
               ++ L       A +   +    + ++I+  E   G+ +++G+ + +++ +  D  D
Sbjct: 22  LAATAVLLGGLMGVSAPVAQAEGNFPSQVHIAAGERATGRILNVGVGRSVVINLAEDAAD 81

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLVS+P  AD V+ +PR +++ G   GQ+ ++L    G+++ + D+ +E+D + +   +R
Sbjct: 82  VLVSNPEIADAVLRTPRRIFVIGNTAGQSRLVLFSRSGRELASFDVRVEKDTSDITRIIR 141

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + I  SNI  E ++ +VVL G  ++  ++Q+A +++  F           +S+ +V+NL+
Sbjct: 142 KLIPGSNIFAESINGSVVLSGTAKSTLEAQQAADIAAKF--------QGAASASEVVNLI 193

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           ++AG+DQV LKVT+AEV R I+KQ+G Q   T      +   ++           + +V 
Sbjct: 194 SVAGKDQVHLKVTVAEVERSIIKQLGVQFQGTIGIGNFTPFMSSLPNFTVNPTIVNQAVG 253

Query: 249 GV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           G        S    + AL+R   IRTLAEPTLTAISG++ASF +GG+          G  
Sbjct: 254 GTQLTAGATSITAQVEALQREGVIRTLAEPTLTAISGENASFLAGGEFPIPIS-QRDGEL 312

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVE 361
           SV    +GV L FTP VLS GRI LR++TEVSE      +      + + +VR+A++T+E
Sbjct: 313 SVEFKKFGVGLDFTPVVLSEGRISLRVKTEVSELSNDGAVSAGGITISALKVRRAESTME 372

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGGT+V+AGLL++  QQ  EG+P L +IPILGALF++  F RE+TE+ +  TP++V+P
Sbjct: 373 LPSGGTLVMAGLLQESYQQAIEGVPGLMQIPILGALFKSRDFLREQTELAVFVTPYVVQP 432

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA+  L RPD +     DA   F NR+NKIY P  A+      Y G +GFIYK
Sbjct: 433 VAVSKLQRPDKNLMAPSDAGTIFLNRLNKIYNPTGAA--AEGTYHGQVGFIYK 483


>gi|316933039|ref|YP_004108021.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
 gi|315600753|gb|ADU43288.1| type II and III secretion system protein [Rhodopseudomonas
           palustris DX-1]
          Length = 478

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 148/480 (30%), Positives = 259/480 (53%), Gaps = 21/480 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
              R+          ++  ++        A+      +       + +++G+ K +++ +
Sbjct: 8   RSTRSLRGTAIALSTAAVLTLIPAWTAAHASDYRAAPAASGGLNAQSVALGIGKSMVIDL 67

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P D++DVLV+DP  A+ V+ S +  Y+ G  VGQ N++     G+Q+   DI + RD+  
Sbjct: 68  PRDIKDVLVADPKIANAVIRSAQRAYIIGAAVGQTNIVFFDSTGRQIAAYDIAVTRDLNG 127

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   L++ +  ++I+VE + + V+L+G V +  ++Q+A +L+   +             K
Sbjct: 128 IRTALKQTLPTADIQVEGLGEGVMLNGSVASPIEAQQAFDLAARLVGDD----------K 177

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           KV+N + + G DQV LK+T+AEV+RDI+KQ+G   S   +      +F            
Sbjct: 178 KVVNNIAVRGRDQVMLKITVAEVQRDIVKQLGVDLSANMAYGTAVVNFNNTNPFTQSGSA 237

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
               +          S    L A+E A  +RTLAEP LTAISG+ A+F +GG+    +  
Sbjct: 238 LVPNNALTTKFGSLPSVTATLRAMESAGVVRTLAEPNLTAISGEPATFLAGGEFPVPSGV 297

Query: 300 SSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
           + T      SV    +G++L+FTP V++ GRI L++ TEVSE        +N+  +PS +
Sbjct: 298 TCTNGVCTPSVVFKKFGILLNFTPVVMTAGRISLKVMTEVSEVSSDNAVVINSLSVPSIK 357

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ ++T+E+PSGG++ +AGL+++  +Q   G+P  +++PILG LFR+  +   +TE+ +
Sbjct: 358 TRRVESTLEIPSGGSLAMAGLIQEQTKQAINGMPGAAQLPILGTLFRSRDYINRQTELMV 417

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++V+ VA +DLSRPDD ++   D ++     +NK+YG    SE   + Y+G  GFI
Sbjct: 418 LVTPYVVRAVAQKDLSRPDDGFADASDPQSDLLGSLNKLYGAPGRSEPA-RTYRGRFGFI 476


>gi|240139026|ref|YP_002963501.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
 gi|240008998|gb|ACS40224.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens AM1]
          Length = 502

 Score =  340 bits (871), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 154/494 (31%), Positives = 252/494 (51%), Gaps = 33/494 (6%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEA----NAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
             ++ I       ++   P   +A     + V+ I   E    +++ +   + +I+ +P 
Sbjct: 10  LALLLISGAGLASAMLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPR 69

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D ++V V++P  A+ VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L 
Sbjct: 70  DAKEVFVANPAVANAVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLR 129

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +L++ +      V+ V D++VL G V +  ++Q+A++++  F+  +     A   +  V
Sbjct: 130 QSLQQSLPGGRFDVKAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--V 187

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKF 238
           +N L I  +DQV ++VT+ EV R +LKQ G   S   S+  P      + +      G  
Sbjct: 188 INNLTIRNKDQVMIRVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSR 247

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-- 296
             +    +       FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+      
Sbjct: 248 SPDANALTASVQTGGFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLS 307

Query: 297 ----------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
                     T  S     ++T   YGV L FTP V++  RI +RI T+V +     +  
Sbjct: 308 CSAASTVSIGTSVSQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFT 367

Query: 345 ------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                    +P    R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALF
Sbjct: 368 YYLNDRPTPVPGTTKRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALF 427

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+  + R+ETE+ I  TP++ +P+  R + RPDD +    D +A    R+NKIYG     
Sbjct: 428 RSRDYQRDETELMIMVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGG 487

Query: 459 EVEGQNYKGAIGFI 472
            + G  Y+G +GFI
Sbjct: 488 TL-GPAYRGRVGFI 500


>gi|294140774|ref|YP_003556752.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293327243|dbj|BAJ01974.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 484

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 207/436 (47%), Gaps = 21/436 (4%)

Query: 42  VEIGKGKKISI-GLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              G  + I +  + K  IL +   V  V V +P   D+ +     +Y+ GK +G  N++
Sbjct: 31  GPTGASRDIMLIPIFKSRILNLKQTVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + +  +DI I  D+  L++ L  F+    + V+     +++ G    +Q    A
Sbjct: 91  IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLQKMNTA 150

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           VEL++ +   +  ++  ++    V+N++ + G+ QV L+V IAEV+R++ +Q   +  I 
Sbjct: 151 VELAKAYADAASVSKVNST----VLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
           G  S  S   A       +      S +G       D       L   ++    + LAEP
Sbjct: 207 GQGSKLSGGTAGGGATFDLDPAAAISNRGFFARYINDNLLMNFALDVAKQNGLAKVLAEP 266

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +TA+SGQSA F SGG+     V  + G+T++   D+GV + F PTVL  G+I L +   
Sbjct: 267 NVTALSGQSAEFLSGGEFPIP-VPGTNGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325

Query: 336 VSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           VSE     +             +PS   R   TTVEL  G TI ++GL+ D +++  + +
Sbjct: 326 VSEVSNANSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLINDTLRENIDKL 385

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IPILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +  
Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELIILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445

Query: 446 NRVNKIYGPKEASEVE 461
            +++      E SE  
Sbjct: 446 GKMSHKKQDSERSETP 461


>gi|254561621|ref|YP_003068716.1| pilus assembly protein [Methylobacterium extorquens DM4]
 gi|254268899|emb|CAX24860.1| putative pilus assembly protein; putative precursor
           [Methylobacterium extorquens DM4]
          Length = 502

 Score =  339 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 153/480 (31%), Positives = 246/480 (51%), Gaps = 29/480 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P  A         + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 24  MLPGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252
           +VT+ EV R +LKQ G   S   S+  P      + +      G    +    +      
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300
            FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+                T  S
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
                ++T   YGV L FTP V++  RI +RI T+V +     +           +P   
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|304392384|ref|ZP_07374325.1| type II and III secretion system protein [Ahrensia sp. R2A130]
 gi|303295488|gb|EFL89847.1| type II and III secretion system protein [Ahrensia sp. R2A130]
          Length = 544

 Score =  338 bits (867), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 184/498 (36%), Positives = 271/498 (54%), Gaps = 30/498 (6%)

Query: 6   RTFFTMMSIFLFSSNPS-----------VAKLPPIKEANAAVINISDVEIGKGKKISIGL 54
           R F         S  P               +     A+   I I+       K + +GL
Sbjct: 48  RGFMAWSLATALSFAPVLHPIHEMGVAKAQTVAGELRADKNHIVITARNARVPKLVRLGL 107

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
           +K +++ +P    DVLV++P  AD V+ + + +YLFGK VGQ NV +  + G Q+  L+I
Sbjct: 108 DKSLVVDLPSVANDVLVANPGVADAVMRTSQRLYLFGKQVGQTNVFVFDNGGNQIAALEI 167

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           LIERDI+ LE TL R I +S+I+ EM++D +VL G V T  DS +A  L++ F+    + 
Sbjct: 168 LIERDISGLEETLSRLIPNSDIQAEMINDNIVLTGRVSTPSDSTKAQSLAQIFVRGGEQT 227

Query: 175 QY--------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                      ++ + +++NLL I GEDQV LKV+I E++R ++KQ+G   S+T ++ G 
Sbjct: 228 TNPAQQSSIFGDAPTSEIVNLLKIDGEDQVMLKVSIVEIQRSVVKQLGITTSLTNAAEGG 287

Query: 227 SKSFAADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   G        G   S   V  + + +  L  L+    IR LAEPTLTAISG++
Sbjct: 288 FGFSTIAGGSVRNIAGAGLRGSANIVSGQNTLDAQLRVLDHTGMIRMLAEPTLTAISGEA 347

Query: 285 ASFTSGGQHLYKTV---SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
           A F +GG +          +  +       YGV L F PTVL+ GRI L+++TEV EP  
Sbjct: 348 AEFRAGGTYQAPQQIERDENGTSIEYEERQYGVSLQFIPTVLTEGRISLKLKTEVKEPSL 407

Query: 340 ---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                  +   +   R R A TTVELPSGG++ +AGL++DD++Q   G P LSK+PI GA
Sbjct: 408 HGSTGRSSDAGLFGTRERVASTTVELPSGGSMAIAGLIQDDLRQNISGFPGLSKLPIFGA 467

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LFR+  F+R ETE+ I  TP+LV+PVA   L+ PD+ +    +    F  RVN++YG K+
Sbjct: 468 LFRSREFHRSETELVIIVTPYLVRPVARAKLANPDEGFQPASEPAGIFMGRVNRVYGTKQ 527

Query: 457 ASEVEGQNYKGAIGFIYK 474
            +  +G+ Y G+IGFI K
Sbjct: 528 GNLPKGR-YTGSIGFILK 544


>gi|260461949|ref|ZP_05810194.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259032196|gb|EEW33462.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 505

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 191/514 (37%), Positives = 294/514 (57%), Gaps = 49/514 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR   +     +    F        +  + EA +  +  +       +++ +GLNK +++
Sbjct: 1   MRLSGK--LPAIVAAAFGLLLVGTNVQGVVEAKSTQVTATT----ASQRVKLGLNKSVVI 54

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D  D+LV++P+ AD V  + R +YLFGK VG+ N+ + G +G+Q+ +LD+ +ERD+
Sbjct: 55  DLPSDAYDILVANPSVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIASLDLAVERDV 114

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA--- 177
           A LE  +RRFI  S+I+VE+++D VVL G V T  DS+RAV+L+  F+S           
Sbjct: 115 AGLEDYIRRFIPTSDIKVELLNDNVVLTGTVDTPLDSKRAVDLATIFVSGGEATTGQYSQ 174

Query: 178 ------------------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
                                + K++NLL I G+DQVTLKVT+AEV R ++KQ+G     
Sbjct: 175 TAAGGSAQSGVDINNPDQERRTSKIVNLLQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVG 234

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
           +G S+G S    +D          +      ++    +  ++A+E++  ++TLAEPTLTA
Sbjct: 235 SGGSNGISYGALSDPFTGLGKPLSNAGFS--INASGLQAYINAMEQSGVMKTLAEPTLTA 292

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +SG+ A+F  GG++   T  S+             SV   +YG+ L F P VLSPGRI L
Sbjct: 293 VSGEKATFKVGGEYNMVTGVSANVSADNQTGLKTYSVDKIEYGIGLEFQPVVLSPGRISL 352

Query: 331 RIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +++T VSEP    +            +  S R R ADTTVELPSGG++++AGL++DD++Q
Sbjct: 353 KVRTSVSEPTTEGSVSSSTSNTSVGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQ 412

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
              G+P L+KIP+LGALFR+  F R ETE+ I  TP+LVKPVA  DL++PDD+++   D 
Sbjct: 413 AVNGLPGLTKIPVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDG 472

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            A F  +VN++YG  +  +  G+ Y G +G+IYK
Sbjct: 473 AAMFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 505


>gi|90425197|ref|YP_533567.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90107211|gb|ABD89248.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 492

 Score =  338 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 160/495 (32%), Positives = 263/495 (53%), Gaps = 35/495 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R ++      +     ++      L P   A+   +  +       + +++G++K +++ 
Sbjct: 7   RPMRSPLARALWFSAAAALTINPALAPALAADYRPMAAAADGQLNARFLALGVSKSVVID 66

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A+ VV S +  Y+ G  +GQ N++     G Q+   DI + RD+ 
Sbjct: 67  LPRDIKDVLVADPKIANAVVRSAQRAYIIGAAIGQTNIVFFDAAGLQIAAYDIAVTRDLN 126

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +   +++ +  ++IRVE V   +V+L G V +  ++Q+A +L+   +            
Sbjct: 127 GIRAAMKQTLPGADIRVEGVGVKSVMLTGSVSSPIEAQQAGDLAARLVDG---------- 176

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----G 235
              V+N + + G DQV LKVT+AEV+RDI+KQ+G   +   +      +F         G
Sbjct: 177 PDNVVNSIAVRGRDQVMLKVTVAEVQRDIVKQLGVDLTARMNYGTAVVNFNNSNPFTAYG 236

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              VS     +  G     S    L A+E A  +RTLAEP LTAISG+SA+F +GG+   
Sbjct: 237 SNLVSGNATTASFGGGTTPSVTATLRAMESAGVVRTLAEPNLTAISGESATFVAGGEFPV 296

Query: 296 KTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------- 339
               S    T V         +G+ L+FTP V+S GRI LR+ TEVSE            
Sbjct: 297 PAGYSCDPVTHVCTTQISFKKFGISLNFTPVVMSEGRISLRVMTEVSEISTDNSITLSQA 356

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N+  +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LGAL
Sbjct: 357 VSTTTTNSITVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAMNGLPGLAQLPVLGAL 416

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+  +    TE+ +  TP++V+ VA +DLSRPDD ++   D +A     +N+IYG +  
Sbjct: 417 FRSRDYVNRNTELLVLVTPYVVRAVAQKDLSRPDDGFAAASDPQADLIGNINRIYGVRGR 476

Query: 458 SEVEGQNYKGAIGFI 472
           +E    NY+G  GFI
Sbjct: 477 TEPAK-NYRGTYGFI 490


>gi|328545279|ref|YP_004305388.1| Pilus assembly protein [polymorphum gilvum SL003B-26A1]
 gi|326415021|gb|ADZ72084.1| Pilus assembly protein [Polymorphum gilvum SL003B-26A1]
          Length = 470

 Score =  338 bits (866), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 168/479 (35%), Positives = 269/479 (56%), Gaps = 18/479 (3%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQV 62
             R F T +   L       A      +      ++++  E    + + +GL + +++ V
Sbjct: 2   SGRRFATGLLAALAVLVTVSAMPAARADDGFPKTVHVAAGERATARLLRVGLGRSVVVNV 61

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             DV DVLVS+P  AD VV S   +++ G   GQAN++L G +G+++ + ++ +E D + 
Sbjct: 62  AEDVADVLVSNPEIADAVVRSKNRVFVLGNKAGQANLVLFGRNGRELASFNLRVEPDTSD 121

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L   L+R + +S+I  E ++  VVL G   +  D+Q A +L+  F         + + + 
Sbjct: 122 LSALLKRVLPNSDIHAESINGNVVLSGTAVSAADAQSAADLATRF-------GGSGAGAL 174

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKFV 239
            V+N++++AG+DQ+ LKVT+AEV R ++KQ+G   S     G+  G   S +       +
Sbjct: 175 PVLNMISVAGKDQIQLKVTVAEVDRSVVKQLGVNLSGSIGIGNYRGTFNSASDFPVNPGI 234

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +      +  +    +    + AL+R   IRTLAEPTLTAISG++ASF +GG+     VS
Sbjct: 235 TSQATGGIGFLAGGTNVNAEIQALQRDGVIRTLAEPTLTAISGENASFLAGGEFPVP-VS 293

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRK 355
                  V    +GV L FTP VLS GRI +R++TEVSE      +      + + +VR+
Sbjct: 294 QDNDTIGVEFKKFGVGLDFTPVVLSGGRISMRVKTEVSELTNDGAVTTGGIVISALKVRR 353

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A++TVELPSGGT+V+AGLLK+  +Q   GIP L ++P+LGALF++  F R++TE+ +  T
Sbjct: 354 AESTVELPSGGTLVMAGLLKETYKQAVNGIPGLMQLPVLGALFKSRDFLRQQTELVVFVT 413

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           P++V PVA   L+RPD ++    DA+  F NR+NK++G   A       Y G +G+IY+
Sbjct: 414 PYVVTPVAANALTRPDQNFLPPSDAETVFLNRINKLFGVSGAKVP--GTYHGQVGYIYE 470


>gi|167624205|ref|YP_001674499.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
 gi|167354227|gb|ABZ76840.1| type II and III secretion system protein [Shewanella halifaxensis
           HAW-EB4]
          Length = 478

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 115/425 (27%), Positives = 201/425 (47%), Gaps = 19/425 (4%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            I + K  +L +   +  V V +P+ AD+ +     +Y+ GK +G  N+++   + +   
Sbjct: 36  RIPIFKSRVLMLNGPIHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKNEQLAR 95

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
            +DI +  D+  L+  L +F+    + V+     ++L G    +Q    AVEL++ +   
Sbjct: 96  IMDIEVTHDLNGLKTRLHQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEA 155

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
           +      + +  KV+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S   
Sbjct: 156 A----AGDRAPSKVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFLIFNQGSNLSGGV 211

Query: 231 AA-----DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                  D G     +G     + +         L   ++    + LAEP +TA+SGQSA
Sbjct: 212 IGGGGGFDPGSIGGVDGKGLFAQYINGDLMMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 271

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
            F SGG+     V    G T++   DYGV + F PTVL  G+I L +   VSE       
Sbjct: 272 EFLSGGEFPIP-VPGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 330

Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   +  +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG 
Sbjct: 331 SISGNTSTSLVVPSLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 390

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LF +  F   ++E+ I  TP LV+    +D+S P D + +  D + +   +++      +
Sbjct: 391 LFTSKSFQSGQSELVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENTDD 450

Query: 457 ASEVE 461
            S+  
Sbjct: 451 TSDTP 455


>gi|163851903|ref|YP_001639946.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
 gi|163663508|gb|ABY30875.1| type II and III secretion system protein [Methylobacterium
           extorquens PA1]
          Length = 502

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 152/480 (31%), Positives = 245/480 (51%), Gaps = 29/480 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
                A         + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 24  MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQQSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLD 252
           +VT+ EV R +LKQ G   S   S+  P      + +      G    +    +      
Sbjct: 202 RVTVVEVARTVLKQFGISTSGNWSALNPLGGNFLTNNTGFPLTGSRSPDANALTASVQTG 261

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TVSS 300
            FSF+  L A E+A   R LAEPTLTAISG+SA FT+GG+                T  S
Sbjct: 262 GFSFKATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCSAASTVSIGTSVS 321

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPSYR 352
                ++T   YGV L FTP V++  RI +RI T+V +     +           +P   
Sbjct: 322 QGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPGTT 381

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I
Sbjct: 382 KRSSETTVELASGATMMTAGLIQQKNRAAISGLPGLMNLPILGALFRSRDYQRDETELMI 441

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             TP++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 MVTPYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 500


>gi|146342078|ref|YP_001207126.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. ORS278]
 gi|146194884|emb|CAL78909.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. ORS278]
          Length = 492

 Score =  337 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 160/493 (32%), Positives = 263/493 (53%), Gaps = 35/493 (7%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            +       +++    +      L P+K A         V   K   +S+G+ K +++  
Sbjct: 12  KMGTALMRALAMSAAIALVLNPALAPVKAAEDRDAPTVSVGSSKVHYLSLGIGKSVVVDF 71

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P DV+DVLV+DP  A+ VV S +  Y+ G  +GQ NV+    +G+Q+   DI I+RD+  
Sbjct: 72  PQDVKDVLVADPKIANAVVRSAKRAYIIGAAIGQTNVVFFDGEGQQVAAYDIAIKRDLNG 131

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   L + I    ++++ V D V+L G V +  ++Q+A E++   +            + 
Sbjct: 132 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIAARLVGG----------AD 179

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKF 238
           KV+N + + G DQV LKV ++EVRR+I+KQ+G   S + +      +F         GK 
Sbjct: 180 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNQTNPFTAYGKS 239

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           ++ G   S  G  +  S    + A+E A  ++TLAEP LTAISG+SA+F +GG+      
Sbjct: 240 LAAGNGLSAIGGGNLSSVSATMRAMETAGVVKTLAEPNLTAISGESATFIAGGEFPVPGG 299

Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------- 340
            S         TSV    +G+ L+FTP VLS GRI LR+ TEVSE               
Sbjct: 300 YSCDPKTGLCSTSVMFKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITLSYATSA 359

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              ++  +P+ R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P L+++P+LG LFR+
Sbjct: 360 NSASSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGLNQLPVLGQLFRS 419

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
             +   ETE+ +  TP++V+ VA ++LSRPDD ++   D+++    R+N++YG     + 
Sbjct: 420 QDYVNNETELMVLVTPYVVRAVAQKELSRPDDGFAPATDSESALLGRMNRLYGVAAKVDA 479

Query: 461 EGQNYKGAIGFIY 473
                 G  GFI 
Sbjct: 480 VTGQPAG-FGFII 491


>gi|157961834|ref|YP_001501868.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
 gi|157846834|gb|ABV87333.1| type II and III secretion system protein [Shewanella pealeana ATCC
           700345]
          Length = 478

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 124/472 (26%), Positives = 210/472 (44%), Gaps = 33/472 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
             R    +  + L   + + A  P     N   +              I + K  +L + 
Sbjct: 3   FLRHCSIVCLLALLQLSTAYAGGPTAGARNDVQL--------------IPIFKSRVLMLK 48

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V  V V +P+ AD+ +     +Y+ GK +G  NV++   + +    +DI +  D+  L
Sbjct: 49  GPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNVMIWDKNEQLARIMDIEVTHDLNGL 108

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  L +F+    + V+     ++L G    +Q    AVEL++ +   +        +  K
Sbjct: 109 KTRLYQFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA----AGGQAPSK 164

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N++ I G+ QV L+V +AEV+R++ +Q   +  I    S  S       GG      G
Sbjct: 165 VLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGSNLSGGLVGGGGGFDPGSIG 224

Query: 244 DFSVKGVL-----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               KG+              L   ++    + LAEP +TA+SGQSA F SGG+     V
Sbjct: 225 GIDAKGLFAQYINGDLMMNFALDIAKQNGLAKVLAEPNVTAMSGQSAEFLSGGEFPIP-V 283

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMP 349
               G T++   DYGV + F PTVL  G+I L +   VSE                  +P
Sbjct: 284 PGENGNTTIEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGFAISGNTSTTLVVP 343

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG LF +  F   ++E
Sbjct: 344 SLVKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQLFTSKSFQSGQSE 403

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           + I  TP LV+    +D+S P D + +  D + +   +++      ++S+  
Sbjct: 404 LVILVTPRLVRAFNRKDISLPTDGFVLPSDVEFYLLGKLSHKENSDDSSDTP 455


>gi|241518288|ref|YP_002978916.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240862701|gb|ACS60365.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 512

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 203/462 (43%), Positives = 287/462 (62%), Gaps = 23/462 (4%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
              VI++++  +   + +SIGLNK +I+++P D  D++VSDP  +D +V + RT++LFGK
Sbjct: 54  AENVISVTETGVNVTRHVSIGLNKTLIVELPQDAHDIVVSDPGVSDAIVRATRTIFLFGK 113

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            VGQ N+ ++  + + ++N+DI +ERDIA LE  LRR I D+ I+VE++SD +VL G VR
Sbjct: 114 KVGQTNIFILDANKRPIVNIDIAVERDIAGLETDLRRLIPDAAIKVEIISDNIVLTGTVR 173

Query: 153 TIQDSQRAVELSETFLSQSGRNQ-----------------YANSSSKKVMNLLNIAGEDQ 195
           + QDS +A +L+  F+                          +    K++NLL IA +DQ
Sbjct: 174 SAQDSAQAADLASAFVKGGEATTRTQSASSGGSQGSVALVAEDRQESKIINLLRIAADDQ 233

Query: 196 VTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           V LK+TIAEV+R+ILKQ+GF +   +  GS+     + + D        G      G   
Sbjct: 234 VMLKMTIAEVKREILKQLGFDNELKNAGGSTIAQLGTASTDATTATSGGGLSALFSGSFG 293

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           +    T L+ALE+A  +RTLAEPTLTA+SGQSASF +GG+ LY       G T+ T + Y
Sbjct: 294 KHGLSTTLNALEQAKVVRTLAEPTLTAVSGQSASFQAGGEVLYSNT-DRDGNTTQTPYSY 352

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L F P VL+ GRI L+I TEVSEPV  ++    P+Y  R   TTVELPSGG+I LAG
Sbjct: 353 GISLSFKPIVLTSGRISLQISTEVSEPVTSISGSS-PTYGKRSTSTTVELPSGGSIALAG 411

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D+  +   G P+L+KIP  GALFR + F R ETE+ I ATP+LV+PVA +DL+RPDD
Sbjct: 412 LIRDNFNRTSNGTPVLNKIPGFGALFRQTSFERNETELVIIATPYLVRPVAAKDLNRPDD 471

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           + S  DDA     +R+NK+YG  +  E   Q Y G +GFIYK
Sbjct: 472 NLSPADDASQGLLDRINKLYGNGKTLEPTAQ-YHGTVGFIYK 512


>gi|188581660|ref|YP_001925105.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
 gi|179345158|gb|ACB80570.1| type II and III secretion system protein [Methylobacterium populi
           BJ001]
          Length = 502

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 154/482 (31%), Positives = 245/482 (50%), Gaps = 29/482 (6%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            S+    A   P     + V+ I   E    +K+ +   + +I+ +P D ++V V++P  
Sbjct: 22  VSTLSGPASAQPGLPGASPVLTIGPNETAVSRKVELSKGRSLIIDLPRDAKEVFVANPAV 81

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           A+ VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L++ +     
Sbjct: 82  ANAVVRSSRKLFLIGIDNGATSIFVMDAEGRQIAALDVTIARDINVLRQSLQQSLPSGRF 141

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V+ V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV
Sbjct: 142 DVKAVGDSLVLSGSVNSASEAQQALDIANAFVGIAAGGGVATRGT--VINNLTIRNKDQV 199

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------SEGGDFSVKGV 250
            ++VT+ EV R +LKQ G   S   ++  P           F        +    +    
Sbjct: 200 MIRVTVVEVARTVLKQFGISTSGNWAALNPLGGNVFTNNTGFPLTGSRSPDANAITASVQ 259

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK------------TV 298
              FSF   L A E+A   R LAEPTLTAISG+SA FT+GG+                T 
Sbjct: 260 TGGFSFRATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPLSCAAASTVSIGTS 319

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--------AGDMPS 350
            S     ++T   YGV L FTP V++  RI +RI T+V +     +           +P 
Sbjct: 320 ISQGCVVALTYKPYGVSLSFTPVVMAENRISVRIATDVVDLDPQNSFTYYLNDRPTPVPG 379

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+
Sbjct: 380 TTRRSSETTVELASGATMMTAGLIQQKNRGAISGLPGLMNLPILGALFRSRDYQRDETEL 439

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            I  TP++ +P+  R + +PDD Y    D +A    R+NKIYG      + G  Y+G +G
Sbjct: 440 MIMVTPYIAQPMEARQVQKPDDGYVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVG 498

Query: 471 FI 472
           FI
Sbjct: 499 FI 500


>gi|319785608|ref|YP_004145084.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317171496|gb|ADV15034.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 506

 Score =  335 bits (860), Expect = 8e-90,   Method: Composition-based stats.
 Identities = 181/503 (35%), Positives = 289/503 (57%), Gaps = 43/503 (8%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +   + ++   +     ++ +     N         +++ +GLNK +++ +P D  D+LV
Sbjct: 7   LPAIVAAAFGLLLVGTNVQGSVVEAKNAQVTASTATQRVKLGLNKSVVIDLPSDAYDILV 66

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           ++P  AD V  + R +YLFGK VG+ N+ + G +G+Q+++LD+ +ERD+A LE  +RRF+
Sbjct: 67  ANPAVADAVTRTARRIYLFGKAVGETNIFVFGPNGEQIVSLDLAVERDVAGLEDYIRRFL 126

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176
             S ++VE+++D VVL G V T  D++RA +L+  F+S                      
Sbjct: 127 PTSAVKVELLNDNVVLTGTVDTPLDAKRAEQLANMFVSGGEATTGQYSQTAAGGSAQSGV 186

Query: 177 ------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                     + +++NL+ I G+DQVTLKVT+AEV R ++KQ+G     +G S+G S   
Sbjct: 187 DINNPDQERRTSQIVNLIQIIGDDQVTLKVTVAEVSRSVMKQLGVNMVGSGGSNGISYGA 246

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            +D       +  +   +  +     +  ++A+E++  ++TLAEPTLTA+SG+ A+F  G
Sbjct: 247 ISDNFTGLGKQLSNSGFQ--IGASGLQAYVNAMEQSGVMKTLAEPTLTAVSGEKATFKVG 304

Query: 291 GQHLYKTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           G++   T  S+  +           V   +YG+ L F P VLSPGRI L+++T VSEP  
Sbjct: 305 GEYNMVTGVSANVSQDNQTGLKTYSVEKIEYGIGLEFQPVVLSPGRISLKVRTSVSEPTT 364

Query: 342 GVN----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             +            +  S R R ADTTVELPSGG++++AGL++DD++Q   G+P L+KI
Sbjct: 365 EGSVSFSSGVTSPGMNALSLRKRLADTTVELPSGGSMMIAGLVRDDVRQAVNGLPGLTKI 424

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGALFR+  F R ETE+ I  TP+LVKPVA  DL++PDD+++   D    F  RVN++
Sbjct: 425 PVLGALFRSRDFVRNETELVIIITPYLVKPVARNDLAKPDDNFNAASDGAGMFLGRVNRV 484

Query: 452 YGPKEASEVEGQNYKGAIGFIYK 474
           YG  +  +  G+ Y G +GFIYK
Sbjct: 485 YGTMQTDKPNGR-YHGVVGFIYK 506


>gi|115525749|ref|YP_782660.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
 gi|115519696|gb|ABJ07680.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisA53]
          Length = 486

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 152/489 (31%), Positives = 261/489 (53%), Gaps = 33/489 (6%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R          ++   S  P+   +     A      +++        +++G++K +++ 
Sbjct: 11  RRFAVRSLAWTAVAALSLQPAALPVI----AADYRPAVANEGQMNAHFLALGISKSVVID 66

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P D++DVLV+DP  A  V+ S +  Y+ G +VGQ N++     G+Q+   DI + RD+ 
Sbjct: 67  LPRDIKDVLVADPKIATAVIRSAQRAYIIGASVGQTNIVFFDAAGQQIAAYDIAVTRDLN 126

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +   L++ + +++IRVE V    V+L G V +  ++Q+A E++                
Sbjct: 127 GIRAALKQTLPNTDIRVEGVGPKGVLLSGSVSSPVEAQQAGEVAARLAEG---------- 176

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           ++ V+N + + G DQV LKVT+AEV+RDI+KQ+G   S + +      +F          
Sbjct: 177 AENVVNSIAVRGRDQVMLKVTVAEVQRDIIKQMGIDLSASMTYGTAVVNFNNTNPFTAFG 236

Query: 241 ---EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                G+          +    L A+E A  +RTLAEP LTAISG+SA+F +GG+    +
Sbjct: 237 RQLVTGNSLATSFGGGPTVTATLRAMESAGVVRTLAEPNLTAISGESATFIAGGEFPVPS 296

Query: 298 VSSST-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344
             +       G T +    +G+ L+FTP V++ GRI LR+ TEVSE     +        
Sbjct: 297 GYNYDPVTHVGTTQIAFKKFGISLNFTPVVMTEGRISLRVMTEVSELSNDNSITLTQSNG 356

Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +PS + R+A+TT+E+PSGG++ +AGL+++  +Q   G+P +++IP+LG+LFR+  +
Sbjct: 357 DGLTVPSIKTRRAETTLEIPSGGSMAMAGLIQEQTKQAINGLPGMAQIPVLGSLFRSRDY 416

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
              +TE+ +  TP++V+ VA +DLSRPDD ++   D +      +N+IYG       + +
Sbjct: 417 VNRQTELMVLVTPYVVRAVAQKDLSRPDDGFAAVSDPQGDLLGSINRIYGVPGKPGPD-R 475

Query: 464 NYKGAIGFI 472
           NY+G  GFI
Sbjct: 476 NYRGTYGFI 484


>gi|212635453|ref|YP_002311978.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
 gi|212556937|gb|ACJ29391.1| Flp pilus assembly protein [Shewanella piezotolerans WP3]
          Length = 479

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 116/413 (28%), Positives = 195/413 (47%), Gaps = 20/413 (4%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I + K  +L +   V  V V +P+ AD+ +     +Y+ GK +G  N+++   D +    
Sbjct: 37  IPIFKSRVLMLEGPVHRVSVGNPSIADIKLLPNDELYILGKQLGSTNIMIWDKDEQLSKI 96

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           +DI +  D+  L+  L  F+    + V+     ++L G    +Q    AVEL++ +   +
Sbjct: 97  MDIEVTHDLNGLKTRLHEFLPTEKLGVQTSQGQLLLSGQASNLQKMNTAVELAQGYAEAA 156

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------G 225
                  ++  +V+N++ I G+ QV L+V +AEV+R++ +Q   +  I            
Sbjct: 157 ----AGGTAPSRVLNMMTIGGDHQVMLEVVVAEVQRNVARQFDSKFFIFNQGDHLAGGVI 212

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                    GG    +G     + V         L   ++    + LAEP +TA+SGQSA
Sbjct: 213 GGGGGGFAPGGIGGVDGKGLFAQYVNGDLLMNFALDVAKQNGLAKVLAEPNVTAMSGQSA 272

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---- 341
            F SGG+     V    G T+V   DYGV + F PTVL  G+I L +   VSE       
Sbjct: 273 EFLSGGEFPIP-VPGENGNTTVEYRDYGVGVKFVPTVLDSGQINLNLNVVVSEISTANGF 331

Query: 342 -----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   +  +PS   R   TTVEL  G TI ++GL+ D +++  + +P L  +P+LG 
Sbjct: 332 TISGNTSTSLVVPSLTKRSTATTVELADGQTIAISGLISDTLRENIDKLPGLGDVPVLGQ 391

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           LF +  F   ++E+ I  TP LV+P    D+S P D + +  D + +   +++
Sbjct: 392 LFTSKSFQNGQSELVILVTPRLVRPFNRNDISLPTDGFVLPSDVEFYLLGKLS 444


>gi|307943145|ref|ZP_07658490.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
 gi|307773941|gb|EFO33157.1| type II and III secretion system protein [Roseibium sp. TrichSKD4]
          Length = 482

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 157/471 (33%), Positives = 261/471 (55%), Gaps = 18/471 (3%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
             I L  S   V +    + A    ++++  E    + +S+G+ + +I+     V DVLV
Sbjct: 22  AGIALVLSLAGVPEPAAAQGAFEKRVHVASGERVSSRLLSVGVGRSVIIDTAEAVADVLV 81

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  AD VV +P  +++ G   GQAN++L    G+++ + ++ +E D + L   +++++
Sbjct: 82  SNPGVADAVVRTPNRIFVLGNKAGQANLVLFSRTGRELASFNLRVEPDTSDLVRFIQKYV 141

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             SNI  + ++  ++L G      D+QRA +L+  +     +          ++N++ + 
Sbjct: 142 PGSNIEAQSLNGNIILSGTAANAADAQRAADLAARYAGDGKKATD-------ILNMITVD 194

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSV 247
           GEDQV LKVT+AEV R+++KQ+G Q +           FA     + G     +    + 
Sbjct: 195 GEDQVHLKVTVAEVDREVIKQLGVQLNGEIKIGNFGFGFANDTSFNAGTSVAQQTTRLAG 254

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           + V    +    + AL+R   ++TLAEPTLTAISG++ASF +GG+            T V
Sbjct: 255 ELVSGGTTIGAEVKALQREGIVKTLAEPTLTAISGENASFLAGGEFPIPISQDGNEVT-V 313

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELP 363
               +GV L FTP VLS GRI L+I TEVSE      + +    +P+ +VR+A++T+ELP
Sbjct: 314 EFKKFGVGLDFTPIVLSGGRISLKITTEVSELSSDGAVNIGTLTIPALKVRRAESTLELP 373

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGGT+V+AGLL++  +Q   G+P L  +P+LG+LF++  F R +TE+ +  TP++V P+A
Sbjct: 374 SGGTLVMAGLLQESYRQSVNGVPGLMNLPVLGSLFKSRDFLRSQTELVVFVTPYIVNPIA 433

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
              + RPD + +  +D++  F NR+NKIY     +      Y G +GFIYK
Sbjct: 434 ASKVQRPDKNLAPANDSETLFLNRLNKIYRANGQNAQAP--YHGQVGFIYK 482


>gi|218516388|ref|ZP_03513228.1| pilus assembly secretion protein [Rhizobium etli 8C-3]
          Length = 436

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 215/441 (48%), Positives = 288/441 (65%), Gaps = 25/441 (5%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           +NK +++ +P D  D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLD
Sbjct: 1   MNKAVVVDLPEDAHDILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLD 60

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I IERD++ LE  LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL     
Sbjct: 61  IEIERDVSGLEANLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEA 120

Query: 174 NQYANSSSK-----------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
                ++S                  +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF 
Sbjct: 121 TTRTETASGTGGDSAVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFD 180

Query: 217 H---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           +   + +G +     + +AD     V  G     K  + ++   T L+ALE+A  +RTLA
Sbjct: 181 NLISNSSGMTVAQLGTPSADSATATVGGGLAALFKSSIGKYDISTYLNALEQAKVVRTLA 240

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EPTLTAISGQ+A+F SGGQ LY T   + G  +V   +YG+ L F P VLS GRI L I+
Sbjct: 241 EPTLTAISGQAATFNSGGQQLYSTT-DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIK 299

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           T VSEPV G        Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKIP+
Sbjct: 300 TNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPL 356

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+YG
Sbjct: 357 LGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYG 416

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
            +EA   + Q + G+IGFIYK
Sbjct: 417 RREAPVADAQ-FHGSIGFIYK 436


>gi|13474660|ref|NP_106229.1| exporter protein, cpaC [Mesorhizobium loti MAFF303099]
 gi|14025415|dbj|BAB52015.1| exporter protein; CpaC [Mesorhizobium loti MAFF303099]
          Length = 471

 Score =  334 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 181/473 (38%), Positives = 279/473 (58%), Gaps = 43/473 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
                 +++ +GLNK +++ +P D  D+LV++PT AD V  + R +YLFGK+VG+ N+ +
Sbjct: 2   TATTATQRVKLGLNKSVVIDLPSDAYDILVANPTVADAVTRTARRIYLFGKSVGETNIFV 61

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            G +G+Q+ +LD+ +ERD+A LE  +RRF+  S+++VE+++D VVL G V T  D++RAV
Sbjct: 62  FGPNGEQIASLDLAVERDVAGLEDYIRRFLPTSDVKVELLNDNVVLTGTVDTPLDAKRAV 121

Query: 162 ELSETFLSQSGRNQYA---------------------NSSSKKVMNLLNIAGEDQVTLKV 200
           +L+  F+S                                  K++NLL I G+DQVTLKV
Sbjct: 122 DLATIFVSGGEATTGQYSQTAAGGSAQGGVDINNPDQERRVSKIVNLLQIIGDDQVTLKV 181

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           T+AEV R ++KQ+G      G S+G S    +D       +         +   +    +
Sbjct: 182 TVAEVSRSVMKQLGVNMVGNGGSNGISYGALSDNFTGLGKQLSHSGFN--IGNSALMAYI 239

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHD 311
           +A+E++  ++TLAEPTLTA+SG+ A+F  GG++   T  S              ++   +
Sbjct: 240 NAMEQSGVMKTLAEPTLTAVSGEKATFKVGGEYNLLTGVSQNVSSDNQTGLTTYTINKIE 299

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVE 361
           YG+ L F P VLSPGRI L+++T VSEP    +            +M S R R ADTTVE
Sbjct: 300 YGIGLEFQPVVLSPGRISLKVRTSVSEPTTEGSVALSNGVTSPGANMLSLRKRLADTTVE 359

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           LPSGG++++AGL++DD++Q   G+P L+KIP+LGALFR+  F R E+E+ I  TP+L KP
Sbjct: 360 LPSGGSMMIAGLVRDDVRQAVNGLPGLTKIPVLGALFRSRDFVRNESELVIIITPYLAKP 419

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           VA  DL++PDD+++   D  A F  +VN++YG  +  +  G+ Y G +G+IYK
Sbjct: 420 VARNDLAKPDDNFNPASDGAANFLGKVNRVYGTMQTDKPNGR-YHGVVGYIYK 471


>gi|218530654|ref|YP_002421470.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
 gi|218522957|gb|ACK83542.1| type II and III secretion system protein [Methylobacterium
           chloromethanicum CM4]
          Length = 499

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 148/477 (31%), Positives = 247/477 (51%), Gaps = 26/477 (5%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
                A         + V+ I   E    +++ +   + +I+ +P D ++V V++P  A+
Sbjct: 24  MLSGPASAQAGLSGASPVLTIGANEAAVSRRVELSKGRSLIVDLPRDAKEVFVANPAVAN 83

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            VV S R ++L G + G  ++ ++  +G+Q+  LD+ I RDI  L  +L+  +      V
Sbjct: 84  AVVRSSRKLFLIGIDNGATSIFVMDGEGRQIAALDVTIARDINVLRQSLQLSLPGGRFDV 143

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           + V D++VL G V +  ++Q+A++++  F+  +     A   +  V+N L I  +DQV +
Sbjct: 144 KAVGDSLVLSGSVNSTSEAQQALDIANAFVGIAAGGGVATRGA--VINNLTIRNKDQVMI 201

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVSEGGDFSVKGV 250
           +VT+ EV R +LKQ G   +   ++  P        + +      G +  +G   S    
Sbjct: 202 RVTVVEVARTVLKQFGINVTGNWAALNPLSPTGNVLTNTTPFPLTGAYSPDGNALSASIR 261

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305
               S +  L A E+A   R LAEPTLTAISG+SA FT+GG+    +     V+ +    
Sbjct: 262 SGGVSLQATLRAFEQAGVSRILAEPTLTAISGESAKFTAGGEIPVPSNCSAGVAGAACTV 321

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRK 355
           ++    YGV L FTP V++  RI +R+ T+V+E     +             +P+   R 
Sbjct: 322 ALEFKPYGVSLAFTPIVMAENRISIRVATDVTELDRQNSYSFSFPGSNRVTPVPATTRRS 381

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+  + R+ETE+ I  T
Sbjct: 382 SETTVELASGATMMTAGLIQQKSRASISGLPGLMNLPILGALFRSRDYQRDETELMIMVT 441

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           P++ +P+  R + RPDD +    D +A    R+NKIYG      + G  Y+G +GFI
Sbjct: 442 PYIAQPMEARQVQRPDDGFVDAPDGQAVLLGRLNKIYGTVGGGTL-GPAYRGRVGFI 497


>gi|328953626|ref|YP_004370960.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453950|gb|AEB09779.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 503

 Score =  333 bits (853), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 138/493 (27%), Positives = 213/493 (43%), Gaps = 46/493 (9%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           + ++ L   + +V   P +  A A +  + D ++   + I + + +  +L+    +  + 
Sbjct: 21  LAAMVLILGSAAVYSPPSVLAAQALLERVKDEDLE--QVIRLRVGRSKVLRTSFTISRIS 78

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V+DP  AD+++ S R +Y+ G   G  N+ L G   +   +  + +E D++ L+  L + 
Sbjct: 79  VADPEVADIIMISEREVYINGNAPGVTNISLWGK--RSFSSAKVTVEADVSLLKEKLFKV 136

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I VE   DTVVL G V      + A+ L+  F               KV+NLL+I
Sbjct: 137 LPKEKIAVEAAEDTVVLSGEVSGPVAQETAISLATAFSGGKK---------DKVVNLLHI 187

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------------G 235
            G  QV + V +AE+ R + K++G   + +  +     +                     
Sbjct: 188 GGVQQVMVAVRVAEINRSVGKEMGINFAYSNKAGNFGATLLNSLSILKNIDRNLDSVTAP 247

Query: 236 GKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  V+ G            +    G+   F +      L++    R LAEP L   SGQ 
Sbjct: 248 GVLVNPGVTTSSQQFSSSVNAVFGGLYGSFFWTAFFDVLKKNGLGRILAEPNLVTTSGQE 307

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-- 342
           ASF +GG+     V S  G TS+    +GV L FTPTVL   +I LRI  EVSE      
Sbjct: 308 ASFLAGGEFPIP-VPSGLGTTSIDYKKFGVGLVFTPTVLDNDKIALRINPEVSELDFSSQ 366

Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               VN   +P  +VR+  T VE+  G T+ +AGLL D  + +    PLL  +PILG LF
Sbjct: 367 TTVVVNNFIVPGLKVRRTTTQVEMKDGQTLAIAGLLSDQHRNVVNKYPLLGDLPILGVLF 426

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R+S F + ETE+ I  TP LVK         P D Y    D + +   R        +  
Sbjct: 427 RSSSFQKSETELVILVTPHLVKSQPPGPHRLPTDKYIEPTDLEFYLLGRSEGRDKKPQPP 486

Query: 459 EVEGQNYKGAIGF 471
                      GF
Sbjct: 487 AASPAREITPPGF 499


>gi|209886530|ref|YP_002290387.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
 gi|209874726|gb|ACI94522.1| type II and III secretion system protein [Oligotropha
           carboxidovorans OM5]
          Length = 486

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 162/482 (33%), Positives = 267/482 (55%), Gaps = 28/482 (5%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
              +S+F+  S PS A       ++A+  +   +     + + +G++K +++ +P DV+D
Sbjct: 13  AAAISVFILGSAPSSALATDYSASSASTSHADSLN---ARALRLGISKSLVVDLPRDVKD 69

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           VLV+DP  A+ VV S R  Y+ G +VGQ N+I    DG+QM   D+ + RD+  +   + 
Sbjct: 70  VLVADPKIANAVVRSSRRAYIIGASVGQTNIIFFDADGQQMAAYDVAVTRDLNGIRTAIH 129

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           + +  S+I+VE + D VVL G      ++Q+A EL+   +         + + + ++N +
Sbjct: 130 QALPQSDIQVEGLGDGVVLSGTAANQAEAQQAYELAARLIGGP------SKAGELIVNNI 183

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGG 243
            + G DQV L+VT+AEV+R I+KQ+G   S + +         + +     G + V    
Sbjct: 184 AVRGRDQVMLRVTVAEVQRSIIKQLGVDLSGSFNYGTAVVDFNNTNTFTALGRRLVDNNA 243

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +  G     S +  L A+E A  IRTLAEP LTAISG+SA+F +GG+    T  +   
Sbjct: 244 VSAAFGNGTVPSVKATLRAMESAGVIRTLAEPNLTAISGESATFIAGGEFPIPTGITCQT 303

Query: 304 ---------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPS 350
                      S+    +G+ L+FTP VL+ GRI LR+ TEVS    +  I V+   +PS
Sbjct: 304 AAGGSTGPCQPSIAFKKFGISLNFTPVVLTEGRISLRVMTEVSEVSSDNSISVSGLTIPS 363

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            + R+A+TT+E+PSGG++ +AGL++D  +Q   G+P L+++P+LG LFR+  F   +TE+
Sbjct: 364 IKTRRAETTLEIPSGGSMAMAGLIQDQTKQAINGLPGLAQVPVLGTLFRSRDFINNQTEL 423

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            +  TP++V+ VA +DLSRPDD ++   D ++     + +IYG          +Y+G  G
Sbjct: 424 MVLVTPYVVRAVAQKDLSRPDDGFASASDPQSVLLGNITRIYGVPRRGGP-VASYRGKYG 482

Query: 471 FI 472
           FI
Sbjct: 483 FI 484


>gi|46580524|ref|YP_011332.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120602159|ref|YP_966559.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|46449943|gb|AAS96592.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562388|gb|ABM28132.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|311234263|gb|ADP87117.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 484

 Score =  332 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 125/457 (27%), Positives = 204/457 (44%), Gaps = 41/457 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
               ++ +   K  ++     V  + ++D   A VVV SP+ +Y+ GK  G   + L   
Sbjct: 38  AASSELQVATGKSSVVSTSRPVGRLAIADEAIAGVVVLSPQQVYVTGKKAGTTTLTLWDG 97

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            G  +   D+ +  DIA L+  L R +   N I V  V+DTV L G VR+      A+++
Sbjct: 98  GGAVIGVYDVQVTPDIAQLKEMLHRVLPGENDIMVMGVNDTVTLAGTVRSAASMTTAMDM 157

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +  +            +  KV NL+ + G  QV L+V +AE+RR++++++G   +     
Sbjct: 158 ARLY------------APDKVTNLMQVGGVHQVMLEVKVAEMRRNVMERLGIDLTYAWRG 205

Query: 224 SGPSKSFA-------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                                A   G  +S   + + +    + S    L  L++   ++
Sbjct: 206 DFIFGMLNQLFTLDSQKGVVDAGPSGAVLSPNVNGAFRITSGQVSIMGFLDVLKQNGLVK 265

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEPTL   SG+ A F +GG+     V    G  ++   ++GV L F PTV+  GRI +
Sbjct: 266 VLAEPTLVCRSGEKAEFLAGGEIPIP-VPQGLGTVAIEYKEFGVTLQFLPTVVGDGRISM 324

Query: 331 RIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++  EVSE     V+ +    +P+   R+A TTVEL  G +  +AGLL+DD++Q     P
Sbjct: 325 KVAPEVSELDYTNVVQIQGFTIPAITSRRASTTVELADGQSFAIAGLLRDDVRQAVNKYP 384

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           +L  +P+LG LFR+S + + ETE+ I  TP L KP+       P D Y      + F   
Sbjct: 385 VLGDMPVLGTLFRSSNWQKNETELVIIVTPHLAKPLEANATRLPTDAYREPSAFEYFILG 444

Query: 447 RVNKI----------YGPKEASEVEGQNYKGAIGFIY 473
           R+                           +GA G + 
Sbjct: 445 RMEGSRRADATAAAARTYGTTGAGAPSGMEGAFGHML 481


>gi|90411206|ref|ZP_01219219.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
 gi|90328052|gb|EAS44373.1| Flp pilus assembly protein [Photobacterium profundum 3TCK]
          Length = 489

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 121/447 (27%), Positives = 208/447 (46%), Gaps = 41/447 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  N
Sbjct: 27  TTNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           VI+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +     
Sbjct: 87  VIIWDSKDRLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++   +  
Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260
               S   +   A        + G                         +     F    
Sbjct: 196 FARQSGNWTWGGANGGASVPSNVGILDPILDAAVSNPLNIDDNGLFASFLSSNTLFAAAF 255

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEPTLTAISG+ A F SGG+      +      ++   ++GV L F P
Sbjct: 256 DIAKTNGLAKVLAEPTLTAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFLP 313

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVL 370
           TV+S   I L +  EVSE                   +PS   R A TT+EL +G TI +
Sbjct: 314 TVMSADSINLALNIEVSEISNQNAVSITPGGTNSQFFVPSLSKRGAKTTIELGNGQTIGI 373

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++I  + + +P L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P
Sbjct: 374 AGLLNENITDVVDKLPGLGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLP 433

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEA 457
            D++   +D + +   R++++   + A
Sbjct: 434 TDNFVEPNDWEYYLLGRMSELKRNEPA 460


>gi|78357403|ref|YP_388852.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219808|gb|ABB39157.1| type II/III secretion system protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 482

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 128/499 (25%), Positives = 220/499 (44%), Gaps = 63/499 (12%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R F  + ++ L +     A +P                      + +   K ++L+    
Sbjct: 15  RHFPVLAAVLLSAVCAQAAIVPAA--------------------VQLAAGKSVVLETASP 54

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V+ V V+ P  A V+V SP  +Y+ G   G   + L    G      DI +  DIA L+ 
Sbjct: 55  VRRVSVAAPEVAQVLVLSPTQVYVTGVKPGGTTLTLWNAAGAVSHVFDIQVSPDIARLKE 114

Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            L + +    +I V  V +++ L G V +      A++++  +            +  KV
Sbjct: 115 MLHKLLPSEKDIMVMTVGESITLAGTVSSPAHIATAMDMARMY------------APDKV 162

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------SGPSKSFA 231
            NL+ + G  Q+ L+V +AE+RR +++++G   +    +                  +  
Sbjct: 163 TNLMKVGGMHQIMLEVKVAEMRRSVMQRLGIDLAAAWGNSFAFTMLNQLFTLDNQDGTIG 222

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  +S       +  +   +    L  L+    ++ LAEPTL   SG+ ASF +GG
Sbjct: 223 VGRTAAVLSPNNTGVFQAPVGGMTLTGFLDVLKENGLVKVLAEPTLVCRSGEHASFLAGG 282

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGD 347
           +     V    G  ++   +YGV L FTPTVLSP +I L+++ EVSE     VI +N   
Sbjct: 283 EIPIP-VPQGLGTVAIEFKEYGVTLDFTPTVLSPRQISLKVEPEVSELDYANVIQINGFS 341

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+A TTVEL  G +  +AGLL+D++++  +  P L  IP+LG LFR+S + + E
Sbjct: 342 IPGISSRRASTTVELGDGQSFAIAGLLRDEVRETIKKYPGLGDIPVLGTLFRSSSWQKNE 401

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN-----------KIYGPKE 456
           TE+ I  TP L KP+ M   + P D +    + + F   ++            +  G  +
Sbjct: 402 TELVIIITPRLAKPLDMTAQTLPTDGFREPTEYEFFIQGKMEGDAPAAAPAAMRGSGDVQ 461

Query: 457 ASEVEGQ-NYKGAIGFIYK 474
           +S+       +G  G + +
Sbjct: 462 SSDGNPPSGMEGEFGHVLR 480


>gi|114705456|ref|ZP_01438364.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
 gi|114540241|gb|EAU43361.1| exporter protein, cpaC [Fulvimarina pelagi HTCC2506]
          Length = 544

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 185/523 (35%), Positives = 275/523 (52%), Gaps = 65/523 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L  +         + +   A  N+  +  G  + I +GL+K  +L +  D  D+LV++P
Sbjct: 24  ALGLTAAIALAPLALTQTAYAEQNVVQIGAGHTR-IELGLDKSKVLVLSADAHDILVANP 82

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           + AD +    R +YLFGK VGQ N+I+     +Q+ ++DI IERDIA L   + +++ DS
Sbjct: 83  SIADALTRDRRHIYLFGKQVGQTNLIVFDQANRQIASIDIQIERDIAGLSQAIAKYVPDS 142

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY------------------ 176
           +++VE+++D VVL G VRT  DS+R  +++  +L+                         
Sbjct: 143 DVKVEIMNDNVVLTGRVRTPLDSKRVSQIASAYLTGGEATTGQYIRSASAGGESEGSNGD 202

Query: 177 -----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                      +++NLL I GEDQVTLKVT+AEV+R I+KQ+G   + +    G +    
Sbjct: 203 VAFASETRRESQIINLLQIEGEDQVTLKVTVAEVQRSIIKQLGLNGATSSVIDGMTFGSL 262

Query: 232 AD--FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            D  FG    +   +F + G +        L A+++A  +RTLAEP LTAISG+SASF  
Sbjct: 263 IDNPFGLGKAASNSNFGLAGTIGDTGIRAQLSAMDQAGVMRTLAEPNLTAISGESASFKV 322

Query: 290 GGQHLYKTVSSSTG-----------------------------ATSVTTHDYGVVLHFTP 320
           GG+ L  T  S                                     T +YG+ L FTP
Sbjct: 323 GGEFLLPTGQSYDYGEEAKREFKGFDGDGRAIYEEVPATRDVRTVETKTIEYGIGLDFTP 382

Query: 321 TVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLA 371
            VLSPGRI L+++T VSEP                     R R ADTTVELPSGG++V+A
Sbjct: 383 VVLSPGRISLKVRTSVSEPTFETPFGSSGGFDGGVTGIGIRKRLADTTVELPSGGSLVIA 442

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL++D+++Q+  G P LSK+P+LG+LFR+  F R ETE+ +  TP+LV+PVA   L+RPD
Sbjct: 443 GLVRDEVRQVVSGFPGLSKLPVLGSLFRSRDFQRYETELVVIVTPYLVRPVAREALARPD 502

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           D  +   D  + F  ++N++YG  E     G+ Y G +G+IYK
Sbjct: 503 DGLAFASDGASNFLGKINRVYGHSETKLPPGR-YHGVVGYIYK 544


>gi|148256957|ref|YP_001241542.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146409130|gb|ABQ37636.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 489

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 160/492 (32%), Positives = 266/492 (54%), Gaps = 38/492 (7%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +L R F T  +I L + NP++A +   ++ +  V+++   ++     +S+G+ K +++  
Sbjct: 14  WLVRAFSTAAAIGL-AINPALAPVHAAEDRDTPVVSVGSSKV---HYLSLGIGKSVVVDF 69

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P DV+DVLV+DP  A+ VV S R  Y+ G  VGQ NV+    +G+Q+   DI I+RD+  
Sbjct: 70  PQDVKDVLVADPKIANAVVRSARRAYIIGAAVGQTNVVFFDGEGQQVAAYDIAIKRDLNG 129

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   L + I    ++++ V D V+L G V +  ++Q+A E++   +            S 
Sbjct: 130 VRQALSQSIPG--VKIDGVGDGVILTGSVSSPVEAQQAGEIASRLVGG----------SD 177

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           KV+N + + G DQV LKV ++EVRR+I+KQ+G   S + +      +F            
Sbjct: 178 KVVNSIVVRGRDQVMLKVNVSEVRREIVKQLGIDLSASMTYGTAVVNFNNTNPFTAYGKS 237

Query: 241 -EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              G+          S    + A+E A   +TLAEP LTAISG+SA+F +GG+       
Sbjct: 238 LVNGNALNVSGGGLSSVSATMRAMETAGVTKTLAEPNLTAISGESATFIAGGEFPVPGGY 297

Query: 300 SSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---------- 344
           +    T V     T   +G+ L+FTP VLS GRI LR+ TEVSE                
Sbjct: 298 NCDPTTRVCTTSITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNDNAITVSYALTST 357

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              +  +P+ R R+A+TT+E+PSGG++ +AGL+++  +Q   G+P + ++P+LG LFR+ 
Sbjct: 358 SSSSVTIPAIRTRRAETTLEIPSGGSMAMAGLIQNQTKQAINGLPGVDQLPVLGQLFRSK 417

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            +   ETE+ +  TP++V+ VA ++L+RPDD ++   D+++    R+N++YG     +  
Sbjct: 418 DYVNNETELMVLVTPYVVRAVAQKELARPDDGFAPATDSESALLGRMNRLYGIAAKVDTA 477

Query: 462 GQNYKGAIGFIY 473
                G  GFI 
Sbjct: 478 TGEPAG-FGFII 488


>gi|163751744|ref|ZP_02158962.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
 gi|161328396|gb|EDP99555.1| Flp pilus assembly protein, secretin CpaC [Shewanella benthica
           KT99]
          Length = 484

 Score =  330 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 118/436 (27%), Positives = 197/436 (45%), Gaps = 21/436 (4%)

Query: 42  VEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              G  + I  I + K  I+ +   V  V V +P   D+ +     +Y+ GK +G  N++
Sbjct: 31  GPTGASRDIMQIPIFKSRIINLKHAVHRVSVGNPNIGDIKLLPNNELYVLGKKLGSTNIM 90

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + +  +DI I  D+  L++ L  F+    + V+     +++ G    ++    A
Sbjct: 91  IWDENERLVDVIDIEITHDLNGLKLRLHEFLPGEKLGVQTSQGHLLISGQASNLKKMNTA 150

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           VEL              +     V+N++ + G+ QV L+V IAEV+R++ +Q   +  I 
Sbjct: 151 VEL----AKAYAAAASVSKVKSTVLNMMTVGGDHQVMLEVVIAEVQREVARQFDSKFFIF 206

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-----DRFSFETVLHALERATAIRTLAEP 275
              S  S   A   G   +        +G       D       L   ++    + LAEP
Sbjct: 207 NKGSKMSGGVAGRGGSFDLDPAAAIDSRGFFARYLNDNLMMNFALDVAKQNGLAKILAEP 266

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           T+TA+SGQSA F SGG+     V    G+T++   D+GV + F PTVL  G+I L +   
Sbjct: 267 TVTALSGQSAEFLSGGEFPIP-VPGINGSTTIQYRDFGVGVRFVPTVLDSGQINLNLNVI 325

Query: 336 VSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           VSE                   +PS   R   TTVEL  G TI ++GL+ D +++  + +
Sbjct: 326 VSEISNVHSVSLSGGGSNATLIVPSIVKRTTSTTVELADGQTIAISGLISDTLRENIDKL 385

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P L  IPILG LF +  F   ++E+ I  TP LV+P   + +S P D + +  D + +  
Sbjct: 386 PGLGDIPILGQLFTSKSFKSGQSELVILVTPRLVRPFNRKHISLPTDDFVLPSDMEFYLL 445

Query: 446 NRVNKIYGPKEASEVE 461
            +++      + S   
Sbjct: 446 GKMSHKKQNSQRSGTP 461


>gi|253996769|ref|YP_003048833.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983448|gb|ACT48306.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 513

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 135/480 (28%), Positives = 226/480 (47%), Gaps = 32/480 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK---------ISIGLNKVI 58
              M+ + L S  P  A  P     N  V  ++  ++              + + L +  
Sbjct: 24  LAAMLGVTLLSIAPLHAAEPQANMQNILVAAVTPKKVAARPTPSSTEIVPSVELSLGQSH 83

Query: 59  ILQVPVDV--QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ----MLNL 112
           ++++P  V  Q V V D     V V SPR + L  K +G   VI++   G+     +  +
Sbjct: 84  LVRLPAGVNLQRVKVDDDKIVQVDVTSPREVVLHAKTIGSTMVIILDKSGQSAVMDVRVV 143

Query: 113 DILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
                 D A L+  L++ + +   I+V   ++++VL G V     + +A+ L+E +    
Sbjct: 144 AAATAMDAASLQTKLQQIMPNEKGIKVSTAAESLVLSGTVSDAVKADKAMALAEAY---- 199

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     KKV+N+L +A   QV L+V +AEV +++L ++G     + S+ G + + A
Sbjct: 200 ----GGKDKDKKVINMLQVAAPQQVMLEVKMAEVSKNLLDKLGASFGASRSNGGVAYAIA 255

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           + F     ++         + + +    + A  +   ++ LAEP + AISGQ  SF +GG
Sbjct: 256 SGFLSLTGADPLSPGGLLTITKGNTAIKVDAENKDGVVKILAEPNIIAISGQEGSFLAGG 315

Query: 292 QHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           +       S+TG      ++   D+GV L FTPTVL  G I LR+  EVSE   G     
Sbjct: 316 KIFIPVPQSNTGGGSNVLTLEERDFGVGLKFTPTVLEEGMINLRVAPEVSELNQGGTTVG 375

Query: 348 M---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               PS+ VR+  TTV+L  G +  +AGL+K+++ +     P+L +IPILGALFR+S F 
Sbjct: 376 GSVFPSFTVRRVATTVQLRDGQSFAIAGLIKNNVTENVRRFPILGEIPILGALFRSSSFQ 435

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            ++TE+    TP LVKP+   D + P D ++    A+ F   ++          E   Q+
Sbjct: 436 EDKTELLFVITPRLVKPL-PPDFALPTDKFTPPSKAEFFLNGKLEGKPAEPATEESPAQS 494


>gi|116748930|ref|YP_845617.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697994|gb|ABK17182.1| type II and III secretion system protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 482

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 130/487 (26%), Positives = 207/487 (42%), Gaps = 45/487 (9%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           +++  L   + S           AA            +KI + + K +I++    V    
Sbjct: 16  VLAFSLVLISSSALH--------AAGPVKVVTGEHAARKIHLQVGKSVIVRSGAPVVRTT 67

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +  P  AD+V  SP  +Y+ GK  G  N+ L   D K     DI +  D   L+  L   
Sbjct: 68  LGSPDVADIVALSPTQIYITGKATGVTNLTLWQSDDKVSAIYDIEVAPDTMRLKEKLHEV 127

Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
           +    +I+V    D++ L G + +     +A+ L+E +              KKV+NLL 
Sbjct: 128 LPGERDIKVSASHDSLTLSGTISSSTHLAQAMTLAEAYSGG-----------KKVINLLQ 176

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------ 237
           ++G  QV L+V +AE+ R +  ++G   SI   +     S   +                
Sbjct: 177 VSGVHQVMLEVRVAEMSRTLTNRLGIN-SIWNVNGSMGASLLGNLASLDKFAGSASGSSS 235

Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               +   +     +   F++   + AL+    ++ LAEPTL A+SGQSASF +GG+   
Sbjct: 236 EFTFAPTVNSLFHILGGPFTWTAFIDALKEDGLVKVLAEPTLIAMSGQSASFLAGGEFPI 295

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSY 351
             V    G   +    +GV L FTPTVL+  R+ + +  EVSE             +P  
Sbjct: 296 P-VPQGLGTVGIEYKQFGVSLAFTPTVLNDKRMNIIVAPEVSELDYTTAINIAGVAVPGL 354

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  T +EL  G +  +AGLLKD I++  +  P+L  IP+LGALFR+  F R ETE+ 
Sbjct: 355 TTRKVSTAIELNDGQSFAIAGLLKDTIREDAKKFPILGSIPVLGALFRSVSFQRNETELI 414

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV-----EGQNYK 466
           +  TP L KP+ +     P D +    D++ FF   +                 +   + 
Sbjct: 415 VIVTPRLAKPIDVATQPLPTDKFIEPSDSEFFFLGLLQGRAPKPAPRAPLPITDKKAGFD 474

Query: 467 GAIGFIY 473
           G  G   
Sbjct: 475 GEFGHTV 481


>gi|84387245|ref|ZP_00990266.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84377892|gb|EAP94754.1| Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 484

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 118/454 (25%), Positives = 205/454 (45%), Gaps = 27/454 (5%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TASVAALQTGKTVTVPHHKSTHVVLSGKAAKVSLGDPEVLDIVILKSNELFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGQTADKSNESGSEQADATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
                    +S       A+      +     F++    D             F   L  
Sbjct: 196 FDANFHFFQTSGSDFSWGASSVPAGVLGATPIFNIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VSE     +             +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANTSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P    +PILG LF +  +   ETE+ I  TP L KP+    ++ P D
Sbjct: 374 LLSENVRDISNKMPGFGDVPILGQLFNSQEYISGETELVILVTPRLAKPIDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +   +D + +   R   I  P E+   + Q  +
Sbjct: 434 AFVDPNDLEYYLLGRGAYIAEPSESDSEQSQASQ 467


>gi|254473733|ref|ZP_05087128.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
 gi|211957119|gb|EEA92324.1| type II and III secretion system protein [Pseudovibrio sp. JE062]
          Length = 456

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 23/471 (4%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M++ L  + P +A      EA   V +   V++   +++++G  + I+L    +V+DVLV
Sbjct: 1   MALTLTVTAPQLATAQTNFEATVEVTSQHSVKV---RQLNVGEGRSIVLNTNEEVRDVLV 57

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S+P  AD VV +   +++FG   GQA+++L G+ GKQ+ + ++ ++ D + L   ++R +
Sbjct: 58  SNPKIADAVVRTRNRVFVFGNETGQASLVLFGNGGKQLASFNLNVQPDPSGLIELIQRLL 117

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +S I  ++V+++VVL G   +  ++Q+A +++  F+             KK++N + +A
Sbjct: 118 PNSAINADIVNESVVLSGTAISALEAQQAYDIALKFVGND---------DKKIVNTIAVA 168

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFVSEGGDFSVK 248
            +DQV LKVT+AEV R  +KQ+G       S       F           V   G F  +
Sbjct: 169 EKDQVQLKVTVAEVERTTIKQLGVSLQGALSIGALDVKFNTSPAYNINPSVVNAGLFQGQ 228

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             +   S    + ALER   ++TLAEPTL A+SG++ASF +GG+             S+ 
Sbjct: 229 LPIGGGSIVPTIKALERDGVMKTLAEPTLVAVSGENASFLAGGEFPIPVAYEDN-KISLE 287

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-----RKADTTVELP 363
              +GV L FTP VLS GRI LRI+TEVSE           +  V     R+A++T+ELP
Sbjct: 288 FKPFGVGLDFTPVVLSEGRIKLRIKTEVSELSSEGAVNLAGAISVSALKVRRAESTLELP 347

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SGGT+V+AGLLK +  Q  +GIP L  +PILG +F++  +  ++TE+ I  TP++V+PVA
Sbjct: 348 SGGTLVMAGLLKHNYGQEIDGIPGLKDVPILGTMFKSRDYINKQTELVIFVTPYVVRPVA 407

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
              ++RPDD+++   D    F N++++IY   +A      +Y G IG+IY+
Sbjct: 408 RSQIARPDDNFAAPSDQSTIFLNQLSRIYRSTDAPV--KGSYHGKIGYIYE 456


>gi|27375777|ref|NP_767306.1| hypothetical protein bll0666 [Bradyrhizobium japonicum USDA 110]
 gi|27348915|dbj|BAC45931.1| bll0666 [Bradyrhizobium japonicum USDA 110]
          Length = 505

 Score =  326 bits (836), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 161/503 (32%), Positives = 262/503 (52%), Gaps = 45/503 (8%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVI---------NISDVEIGKGKKISIG 53
              RTF+    + L                              ++  +   K + +S+G
Sbjct: 15  NRARTFWAGAMLTLGLLAAPGLVSAAEAPVGDQAPLQAPDLGVASVGTIAPAKTRFLSLG 74

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           + K +++ +P +V+DVLV+DP  A+ V+ S +  Y+ G  VGQ NV+    DG+Q+   D
Sbjct: 75  VGKSVVIDLPREVKDVLVADPKIANAVIRSAQRAYIIGGQVGQTNVVFFTADGQQVAAYD 134

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I ++RD+  +   LR+ +    +++E + D+V+L G V +  ++Q+A E++   +     
Sbjct: 135 IAVKRDLNGMRAALRQSLPG--VQIEGIGDSVMLTGSVSSPVEAQQAGEVAAKLVGG--- 189

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                  S+KV+N + + G DQV LKV + EVRRDI+KQ+G   S + ++     +F   
Sbjct: 190 -------SEKVVNNIVVRGRDQVMLKVVVGEVRRDIVKQLGVDLSASLNAGTAVVNFNNS 242

Query: 234 -----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                 GG  VS  G           +    + A+E A  +RTLAEP+LTAISG+SA+F 
Sbjct: 243 NPFSVSGGPLVSSNGLGVTGLAKGVATVNATMRAMETAGVMRTLAEPSLTAISGESATFI 302

Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
           +GG+       +    T V     T   +G+ L+FTP VLS GRI LR+ TEVSE     
Sbjct: 303 AGGEFPIPGGYACDPVTHVCTTQITYKKFGISLNFTPVVLSEGRISLRVMTEVSELSNQN 362

Query: 343 ------------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                        ++  +PS + R+A+TT+E+PSGG++ +AGL++   +Q   G+P + +
Sbjct: 363 AISVTQAVSASQTSSVTIPSIQTRRAETTLEIPSGGSMAMAGLIQQQTKQAINGLPGVDQ 422

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +PI+GALFR+  F   ETE+ +  TP++V+ VA ++LSRPDD ++   DA+     R+N+
Sbjct: 423 VPIIGALFRSQDFVNNETELMVIVTPYVVRAVAQKELSRPDDGFAPASDAQTALLGRMNR 482

Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
           +YG            +G  GFI 
Sbjct: 483 LYGI-ARRVDPIDGARGDFGFII 504


>gi|114568970|ref|YP_755650.1| type II and III secretion system protein [Maricaulis maris MCS10]
 gi|114339432|gb|ABI64712.1| type II and III secretion system protein [Maricaulis maris MCS10]
          Length = 491

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 147/502 (29%), Positives = 257/502 (51%), Gaps = 39/502 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVII 59
           MR        ++   L  + P  A+    +  N   + I +   G   + + + L+K  +
Sbjct: 1   MRTEMMIRTLLLLASLAMAAPVAAQPAGTERGNTMQVYIREPGNGPVSETLDLPLSKAAV 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +PVDV DVLV++P   + +V +PR  Y+ G  +GQ N      +G+ +L+LD+ +ERD
Sbjct: 61  VHLPVDVADVLVTNPAVVEAIVRTPRRAYIMGMGIGQTNAFFFDANGQLILDLDLRVERD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           ++ L+ ++ RF+ ++ I VE ++D +VL G   +  D+  A+ +++ ++           
Sbjct: 121 LSPLQESIDRFLPNARIEVEAMNDHIVLSGRAPSASDADAALRIAQRWVDN--------- 171

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
               +++++++   +QV L+V I E++R I++Q+G   S  G++       +        
Sbjct: 172 -PDNILSMISVEAREQVMLRVRIVEMQRTIVRQLGVNLSTAGTTGEFGFGVSTSPDFSRV 230

Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  S   D+         S   +L A+ER   +RTLAEP LTAI+G+SA+F +GG+
Sbjct: 231 GRFLGGTSAMLDWVSGNTGGVESVSAMLQAMERVGLVRTLAEPNLTAITGESANFLAGGE 290

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------- 344
                     G   +    +GV L FTP VLS GRI LRI TEVSE     +        
Sbjct: 291 FPVPVGRDRDGNIIIEYKPFGVGLGFTPVVLSEGRISLRISTEVSELTSQGSLTFQSNNV 350

Query: 345 ------------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                          +P+  V +A+TTVELPSGG++VLAGL++++ +Q  +G+P +  +P
Sbjct: 351 LDDDGNVIGTVPGLTIPALNVNRAETTVELPSGGSLVLAGLIQEETRQNLDGVPGVQNLP 410

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG+LFR+  +  +ETE+ +  TP+LV P     L  P D +    +A    F R+N+ Y
Sbjct: 411 VLGSLFRSRDYENQETELVVLVTPYLVDPTNPNQLQTPADGFRNASEASGLLFGRINRAY 470

Query: 453 GPKEASEVEGQNYKGAIGFIYK 474
               +   + + + G +GF+++
Sbjct: 471 SVPGSDTGD-RGWSGPVGFLFE 491


>gi|323499921|ref|ZP_08104880.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
 gi|323315162|gb|EGA68214.1| pilus assembly protein CpaC [Vibrio sinaloensis DSM 21326]
          Length = 487

 Score =  325 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 115/453 (25%), Positives = 201/453 (44%), Gaps = 30/453 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 17  SAVSATQSGKIVKVPHHKSTHVTLAAKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ +  I V    + ++L G +       
Sbjct: 77  LMAWDSRGRLIESINIEVTHDLNSLKAKLYEFLPNEEIEVHSAQNRLILSGQISNQAAMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +A+ ++ET+ +    ++   S S++V     +NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 KALRVAETYSAGQEADKENRSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG-------------DFSVKGVLDRFSFETVL 260
                   S+   S    +         GG              F    +     F   L
Sbjct: 197 DSNFHFFESNGNFSWGGTSAGAIIDDVNGGIGPIFNAPGIDNTGFLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              ++  + + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKQNGSAKVLAEPNLTALSGAKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           TVLS   I L +  +VSE                   +P    R A +T+EL  G TI +
Sbjct: 315 TVLSDKHINLNLAIDVSEIANSATLTLNPGGTNGTYVIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S P
Sbjct: 375 AGLLSENVRDVVSGVPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRSKVSLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            D +   +D + +   R   I    ++   E Q
Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPTGKSKSNESQ 467


>gi|296444395|ref|ZP_06886360.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
 gi|296258042|gb|EFH05104.1| type II and III secretion system protein [Methylosinus
           trichosporium OB3b]
          Length = 485

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 165/487 (33%), Positives = 251/487 (51%), Gaps = 19/487 (3%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M   +R     ++  L       A   P   A  +    SD +    +++++G+ K II+
Sbjct: 1   MSGSRRHLIPTLATAL---ALVGAGSLPAVAAPQSWGVESDSDAIMSRRVAMGVGKSIIV 57

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D  +++V +P  A+ VV S R +Y+ G   GQ  +  +   G+Q+ NL+I I RD+
Sbjct: 58  DLPADAAEIVVGNPKVANAVVRSTRKLYIMGVETGQTTIFALDRSGRQIANLEISIGRDV 117

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN-- 178
             L   L   + +SNI    V+D ++L G V +  ++QRAV++++ F ++S      +  
Sbjct: 118 GELGPLLHAALPNSNISARTVNDAIILTGTVDSASEAQRAVDIAKGFAARSASASAQSAG 177

Query: 179 --SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFG 235
              +   V+N L I  +DQV LKVT+AEV R +LKQ+G      G +             
Sbjct: 178 GSPADGLVVNALVIRTQDQVMLKVTVAEVERRVLKQLGISAQSGGETLLKGGWGQLVQQN 237

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              V+     S   +         L A ER    R LAEPT+TAISG+SA FT GG+   
Sbjct: 238 PFAVNSALTASSLTINGNNGSTATLQAYERYGVSRVLAEPTVTAISGESAKFTVGGEIAV 297

Query: 296 KTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NA 345
              SS         +  +    YGV L+FTP VL+ GRI L + TEV+E         N 
Sbjct: 298 PGNSSCIAGSTLCSSVGIVFKPYGVSLNFTPVVLAQGRILLHLATEVTEIDYQAAQAYNG 357

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P ++ RK +T+VELPSGG+I  AGLL     Q   G+P L  +P+LGALFR+  + R
Sbjct: 358 VTVPGFKTRKNETSVELPSGGSIATAGLLTQKSDQAINGLPGLINLPVLGALFRSRDYQR 417

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            ETE+ I  TP++ + ++ RD++RPDD ++   D +A+   RVN++Y   +  +   Q  
Sbjct: 418 NETELLIVVTPYIARALSARDVTRPDDGFADASDPQAWLLGRVNRLYANPQHPQAAPQ-L 476

Query: 466 KGAIGFI 472
           KG IGFI
Sbjct: 477 KGRIGFI 483


>gi|303248302|ref|ZP_07334564.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490327|gb|EFL50239.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 528

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 132/503 (26%), Positives = 219/503 (43%), Gaps = 75/503 (14%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
                 + AA   +  V +    ++S+ + K +ILQ   DV  V V+ P  AD V+ SPR
Sbjct: 20  CGMATLSYAAPGRMGTVAVRTAPRLSLTIGKSVILQSDADVSRVSVAQPEIADFVLLSPR 79

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDT 144
            +Y+ G+  G  N+ L     K     D+ +  DI+ L+  L   +     I V    D+
Sbjct: 80  QIYVTGRAPGITNLTLWDKGDKVRAVYDLDVAPDISRLKKMLHDVMPGESGIEVMSSQDS 139

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           + L G VR   + ++A+ L+E +            + KKV+NLL++ G  QV L+V +AE
Sbjct: 140 IALSGTVRDSANMKKALALAEVY------------APKKVLNLLSVGGVQQVMLEVRVAE 187

Query: 205 VRRDILKQIGFQHSITGSSSGPSK----------------------------SFAADFGG 236
           + + ++ ++G   +  G  +                                + + D   
Sbjct: 188 MSKSLVNRMGINLNAVGDGNFAYTLIGSLSSVASGMFDTYYPQNAYQYITMTANSGDGNS 247

Query: 237 KFVSEGGDF--------------------------SVKGVLDRFSFETVLHALERATAIR 270
            F S                               +  G     +   V+  L++   ++
Sbjct: 248 SFDSTPIQLAYREFNQPSSKATMSFNQGTAVARWNTNFGGAGNTAMTAVVDMLKQNGLVK 307

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L  ++GQSA F +GGQ     VSS  G TS+    +GV L+FTPTV++  RI L
Sbjct: 308 ILAEPNLVCLNGQSADFLAGGQIPVP-VSSGLGTTSIEWKKFGVQLNFTPTVVAGDRINL 366

Query: 331 RIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++  EVS              +P+   R+  TT+EL +G T  +AG+L +  +   +  P
Sbjct: 367 KVNPEVSNLDYTRAITLLGSTVPAINTRQTSTTIELKNGQTFAIAGMLNEQSRDSMDKYP 426

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           +L  IP+LGALF++S++ +++TE+ I  T  LVKP+  + +S P D     DD + F   
Sbjct: 427 VLGDIPVLGALFKSSQYQKDQTELVILITAHLVKPLDKKAISLPTDSAHEPDDLEFFLG- 485

Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469
                    +A   +GQ+     
Sbjct: 486 --ISRDAKSDAGAAQGQSLSTPA 506


>gi|218887827|ref|YP_002437148.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758781|gb|ACL09680.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 493

 Score =  324 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 127/478 (26%), Positives = 211/478 (44%), Gaps = 40/478 (8%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
            A    +                  + + + + K ++++       V +SD   A VVV 
Sbjct: 20  AAACAVLATVLLLAAAAQAQADATPQAVPLAVGKSMVVRTAQPAARVSMSDEAIAGVVVL 79

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMV 141
           SP+ +Y+ GK  G A + L    G      DI +  D+A L+  L R + D  +I V  V
Sbjct: 80  SPQQVYVTGKKAGGATLTLWNGAGAITQVYDIQVTPDLAQLKEMLHRVLPDEKDIMVMAV 139

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
            +++ L G VR+      A+++++ +            +  KV NL+ + G  QV L+V 
Sbjct: 140 GESITLAGTVRSAAGMTTALDVAKMY------------APDKVTNLMQVGGVHQVLLEVK 187

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPS-------------KSFAADFGGKFVSEGGDFSVK 248
           +AE+R+ +L+++G   +   ++                         G  VS       +
Sbjct: 188 VAEMRKSVLERLGIDLTYAWNNDFAFGMLNQLFTLDSQKGVVGVGPTGAVVSPNVTGMFR 247

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
               R S    L  L++   ++ LAEPTL   SG++A F +GG+     V    G  ++ 
Sbjct: 248 ATSGRASLMGFLDVLKQNGLVKVLAEPTLICRSGENADFLAGGEIPIP-VPQGLGTVAIE 306

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
              YGV L FTPTV+S   I +R+  EVSE     VI +N   +P+   R+A TTVEL  
Sbjct: 307 FKKYGVTLGFTPTVVSDKLISMRVSPEVSELDYSNVIEINGFTIPAISTRRAATTVELAD 366

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G +  +AGLL+D++++  +  P+L  +P+LG LFR+S + + ETE+ I  TP L KP+  
Sbjct: 367 GQSFAVAGLLRDEVRENIKKYPVLGDVPLLGTLFRSSNWQKNETELVIIVTPRLAKPLDG 426

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNK---------IYGPKEASEVEGQNYKGAIGFIY 473
                P D +    + + F   ++            Y     S       +G  G + 
Sbjct: 427 ATAKLPTDGFREPSEFEFFLQGKMEGAAPAITAPAAYANPRNSADAPSGMEGEFGHVL 484


>gi|218710406|ref|YP_002418027.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218323425|emb|CAV19602.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 484

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 118/455 (25%), Positives = 206/455 (45%), Gaps = 27/455 (5%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
            +S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TLSFAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVMLKSSELFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G V   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQVSNQQQM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ S    ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYSSGETADESKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
                    +S       A+      +     F +    D             F   L  
Sbjct: 196 FDANFHFFQTSGSNISWGASSVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VS          +P        +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P +  +PILG LF +  +   ETE+ I  TP L  P+    ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLASPIDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            +   +D + +   R   I  P E+   + Q  +G
Sbjct: 434 AFVDPNDLEYYLLGRSAYIAEPSESDSEQSQASQG 468


>gi|323137425|ref|ZP_08072503.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
 gi|322397412|gb|EFX99935.1| type II and III secretion system protein [Methylocystis sp. ATCC
           49242]
          Length = 504

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 163/503 (32%), Positives = 253/503 (50%), Gaps = 35/503 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQV 62
           + R    ++     +   + A       A    + +   +     ++IS+G+ K II+ +
Sbjct: 1   MSRLMQNVIGAVWATVAVATATGIAPAHAQGPGVGVESGDNAMLARRISMGVGKSIIVDL 60

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P D  +V+V +P  AD +V S R +Y+ G + GQ  +  +   G+Q+ NL+I I RD+  
Sbjct: 61  PRDATEVVVGNPKVADAIVRSARKLYIMGMDAGQTTIFAVDSSGRQVANLEISIGRDVGE 120

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171
           L   L+  +  SNI    V+D ++L G V +  ++ RAV++++ F S++           
Sbjct: 121 LAPLLKAALPKSNITARTVNDIIILTGTVSSAGEALRAVDIAKGFASRAMGGGAGGGGGV 180

Query: 172 -------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                         S+   V+N L I GE+QV LKVT+AEV R ++KQ+GF     G + 
Sbjct: 181 AGQASNSQVGGVGGSADGNVINALTIRGEEQVMLKVTVAEVERKVIKQLGFSAQAGGETI 240

Query: 225 -GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              S           ++     S   +    +    L A ER    R LAEPT+TA+SG+
Sbjct: 241 LNGSWGKLVQENPFAINPTMSNSALIINGPNNTNATLKAFERYGVSRILAEPTVTAVSGE 300

Query: 284 SASFTSGGQHLYKTVSSSTGATS----------VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +A    GG+       S T  T+          +T   YGV L+F P VLS GRI L + 
Sbjct: 301 AAKMLVGGEIAVPGSGSCTFFTNGGGQPICSPGITFKSYGVSLNFVPIVLSEGRIHLHLA 360

Query: 334 TEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EV+E  +          +P ++ RK +T+VELPSGG+I  AGLL     Q   G+P L 
Sbjct: 361 AEVTEVDLQNTFTYANVAVPGFKTRKNETSVELPSGGSIATAGLLTQKSSQAISGLPGLL 420

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            +PILGALFR+  + R ETE+ +  TP++V+P++ +D+SRPDD ++   D + +   RVN
Sbjct: 421 NLPILGALFRSRDYLRNETELLVIVTPYIVRPLSAQDVSRPDDGFADASDPQGWLLGRVN 480

Query: 450 KIYGPKEASEVEGQNYKGAIGFI 472
           +IY     +    QN+KG IGFI
Sbjct: 481 RIY-STRNNPQLMQNFKGRIGFI 502


>gi|307294424|ref|ZP_07574268.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306880575|gb|EFN11792.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 503

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 133/481 (27%), Positives = 214/481 (44%), Gaps = 45/481 (9%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M   L + +   + LP   +A A + +++        ++ + LNK  +L         LV
Sbjct: 9   MLASLLTLSAGASLLPI--QAQAQIASLNLSNANHAGQLDVPLNKSQVLTADRPFAKALV 66

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +   ADV+  + R++Y+ GK +G  ++ L       +  +D+ +  D+  L+  L   +
Sbjct: 67  GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNIMIAVVDVAVGPDVVTLKRQLSDLL 126

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               I   + +D+VVL G + +     RAV++++T+               KV+N++++ 
Sbjct: 127 PGQPIGARISNDSVVLTGTLSSAAAVDRAVQIAKTYAG------------DKVVNMMSVG 174

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-------------- 237
              QV L+V  +E+ R   KQ G   +    S                            
Sbjct: 175 ASQQVMLEVRFSEMSRGAAKQFGINTAFLSDSGKVVGGIGNAAQSSAILSDTNGRPIVDL 234

Query: 238 --FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +   G  +    +   +  T L ALER   + TLAEPTL A+SG++ASF +GG+   
Sbjct: 235 SKILDSFGIGAANFSIGSLNITTALDALERKGVVTTLAEPTLVALSGETASFLAGGEFPI 294

Query: 296 KTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----V 340
               S++G             ++    +GV L FTPTVL  G I L ++ EVS       
Sbjct: 295 PVAQSNSGGGGGGGGNSGNAITIEFKPFGVSLGFTPTVLDDGIINLVVEPEVSSIDPSAS 354

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + VN   +P  + R+A TT+EL  G +  LAGLL+ D Q      P+L  IPI+GALFR+
Sbjct: 355 VTVNGLTIPGLQTRRASTTLELRDGQSFALAGLLRKDFQDTVRQFPILGSIPIIGALFRS 414

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           S F + ETE+ I  TP LVKP+   D++ P D      +   F   R +K  G       
Sbjct: 415 SGFQKSETELVIIVTPRLVKPMRAEDVALPTDRVKPPHELDLFLMGRTDKAVGINPLDPN 474

Query: 461 E 461
            
Sbjct: 475 A 475


>gi|292491519|ref|YP_003526958.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
 gi|291580114|gb|ADE14571.1| type II and III secretion system protein [Nitrosococcus halophilus
           Nc4]
          Length = 565

 Score =  323 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 127/544 (23%), Positives = 220/544 (40%), Gaps = 80/544 (14%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-----IGKGKKISIGLNKVII 59
           +RT+ + +  FL  +      L  +  A  + +     E             + L K  +
Sbjct: 13  RRTWLSGILFFLVINIIVFFSLTSLALAQTSPLTPRQSENLIIQSDIEGDFQVPLYKSGV 72

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           +++    + + V +P  AD+++   R +Y+ GK +G  NV++   + +   + +I +  D
Sbjct: 73  IELEERAKRISVGNPGIADILMLHSRQLYVVGKALGTTNVVVWDKNERVFASFNIEVVHD 132

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS---------- 169
           +  L+  L R +    I V    + ++L G V ++   + A +L++ FL           
Sbjct: 133 LDTLKRKLHRLLPGEVIEVHSAQERIILSGQVSSVVKMKAAEDLAQGFLPECISAESNVL 192

Query: 170 -------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                               +            V+NL+ + G  QV L++ +AE+ R +L
Sbjct: 193 VRDTTQGTPIIIQQGDGGRGASGANQEGCKKGSVVNLMQVGGAHQVMLEIKVAEIARTVL 252

Query: 211 KQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------ 255
           K+        S        + S  A F       G +  + G L+               
Sbjct: 253 KRFDSNFNVFSFDSPWKFGANSGGASFPNALTPSGNEVPILGSLNGEDSPIGPVVDLFQP 312

Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                                E VL A  +    + LAEPTLT ++GQ A F SGG+   
Sbjct: 313 NTPGIQDKGVFLSYLSSKFFLEAVLEASRQKGLAKVLAEPTLTTLTGQEAQFVSGGEFPI 372

Query: 296 KTVSSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----------GVN 344
               S  TG  ++   ++GV+++F P VL  GRI L++   VSE               N
Sbjct: 373 PVPQSGITGNVTIEFKEFGVIVNFLPLVLDSGRINLKLNVAVSELSQDVPVTLGVQGTEN 432

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +PS   R A  TVEL  G TI +AGL+ D++++L   +P L  +PILGALFR+  F 
Sbjct: 433 TFVIPSLTKRSAKATVELADGQTIGIAGLINDNLRELVTKLPGLGDVPILGALFRSQEFM 492

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
             +TE+ +  TP L +P++ + +  P D +    D + +   R+        +   +G  
Sbjct: 493 SGQTELVMFVTPHLARPISPQQVKLPTDSFVPPTDLEFYLMGRMEAREMSNSSPSSQGII 552

Query: 465 YKGA 468
             G 
Sbjct: 553 DIGP 556


>gi|218680971|ref|ZP_03528868.1| putative pilus assembly protein [Rhizobium etli CIAT 894]
          Length = 434

 Score =  323 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 214/438 (48%), Positives = 288/438 (65%), Gaps = 25/438 (5%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +GLNK +++ +P D  D+LVSDPT AD V  + R +YLFGK VGQ N+ + G  G++++N
Sbjct: 2   LGLNKAVVVDLPEDAHDILVSDPTMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIVN 61

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           LDI IERD++ LE+ LRRFI DSNI VE+VSD +VL G VRT QD+ +A +L++ FL   
Sbjct: 62  LDIEIERDVSGLEVNLRRFIPDSNINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGG 121

Query: 172 GRNQYANSS-----------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                  ++                 + +V+NLL I GEDQVTLKVTIAEVRR++LKQ+G
Sbjct: 122 EATTRTETASGTGGDSSVALFAEGRQASQVVNLLQIEGEDQVTLKVTIAEVRREVLKQLG 181

Query: 215 FQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           F +   + +G +     S +AD     V  G     K  + ++   T L+ALE+A  ++T
Sbjct: 182 FDNLVSNSSGMTVAQLGSPSADSATSTVGGGLAALFKSTIGKYDISTYLNALEQAKVVKT 241

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEPTLTAISGQ+A+F SGGQ LY T   S G  +VT  +YG+ L F P VLS GRI L+
Sbjct: 242 LAEPTLTAISGQAATFNSGGQQLYSTT-DSDGNVTVTPFNYGINLAFKPVVLSSGRISLQ 300

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+T VSEPV G        Y+ R A+T+VELPSGG+I LAGL++D++ Q   G P +SKI
Sbjct: 301 IKTNVSEPVAGSGNAT---YQRRSAETSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKI 357

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LG LFR   F R+ETE+ I ATP+LV+PVA   L+RPDD++S E+D   FF NRVNK+
Sbjct: 358 PLLGTLFRQKGFERQETELVIIATPYLVRPVARNQLNRPDDNFSPENDGATFFLNRVNKV 417

Query: 452 YGPKEASEVEGQNYKGAI 469
           YG +EA   + Q + G+I
Sbjct: 418 YGRREAPVADAQ-FHGSI 434


>gi|315497465|ref|YP_004086269.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315415477|gb|ADU12118.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 476

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 142/467 (30%), Positives = 241/467 (51%), Gaps = 19/467 (4%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            + +   A   P     + +   +     + + +++   +  ++ +PVD  DV VS+P  
Sbjct: 20  MAVSGVEAAPKPYSAPVSPMTVQTQTSGARTQVLNLAKGRSAVVDLPVDAADVFVSNPAV 79

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD V+ +PR +++ G   GQ++ I     G+Q+LNL I +      L  T+++    S++
Sbjct: 80  ADAVLRTPRRIFVLGVAAGQSDAIFFDATGRQILNLQIRVGVSTDQLSDTVQKLYPQSDV 139

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +V+ V+  V+L G+V    +S+    LS  F  +           + ++N+L++AG+DQV
Sbjct: 140 QVQSVNGYVILSGVVANASESEAIQRLSVAFAEK----------PENIINMLSVAGKDQV 189

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
           +LKV I EV++  +KQ+GF  +     +G  +    +      +      +K        
Sbjct: 190 SLKVRIVEVQKSSIKQMGFNFNGLSGQTGEVQYALQNAPTYGTNGKALGGMKIGYADKLL 249

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L A ER   +RTLAEP L A+SG+SA F +GG+        + G  +V    YGV L
Sbjct: 250 SASLQAFERVGLVRTLAEPNLAAVSGESAKFLAGGEFPVPVAKDTQGRVTVEFKTYGVGL 309

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVLA 371
            FTP VLS G I L++ TEVSE V   +        +P   VR+A+TTVELPSGG++++A
Sbjct: 310 GFTPVVLSNGTISLKLSTEVSEIVNTGSFSLDDTFTIPGLSVRRAETTVELPSGGSLMIA 369

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GLL+   +Q  + +P ++ IP+LGALFR+  F  E+TE+ +  TP+++   +      P 
Sbjct: 370 GLLQSKYKQSIDALPGMTTIPVLGALFRSRDFLDEQTEMVVIVTPYIISAKSPDAFQTPA 429

Query: 432 DHYSVEDDAKAFFFNRVNKI----YGPKEASEVEGQNYKGAIGFIYK 474
           D++ V  D ++ F  R+NK      G    +     +Y+  IG++ +
Sbjct: 430 DNFQVASDLESVFLGRLNKSVRAKRGEVAEAPPLAGSYQAPIGYVIE 476


>gi|254506750|ref|ZP_05118890.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
 gi|219550331|gb|EED27316.1| Flp pilus assembly protein, secretin CpaC [Vibrio parahaemolyticus
           16]
          Length = 487

 Score =  322 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/456 (25%), Positives = 204/456 (44%), Gaps = 30/456 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 17  SATAATQSGKIVKVPHHKSTHVTLAGKAKRVSLGDPEVLDIVMLKSDEVFLIGKKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ +  I+V    + ++L G + +     
Sbjct: 77  LMAWDRRGQLIESINIEVTHDLNSLKAKLYEFLPNEEIKVHSAQNRLILSGQISSQSAMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S S++V     +NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYSAGQEVDKENKSLSEQVQKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196

Query: 214 GFQHSITGSSSGPSKSF----------AADFGGKFVSEG---GDFSVKGVLDRFSFETVL 260
                   S+   S                 G  F + G          +     F   L
Sbjct: 197 DSNFHFFESNGSFSWGGTSAGAIIDDVGGGIGPIFNTPGIDSTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              ++    + LAEP LTA+SG  A F +GG+        +    ++   +YGV L F P
Sbjct: 257 DIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDENG--ITIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVL 370
           TVLS   I L +  +VSE               +   +P    R A +T+EL  G TI +
Sbjct: 315 TVLSDKNINLNLAVDVSEIANTSSLTLSPGGTNSTYVIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +  G+P  S IP+LG +F +  +   ETE+ I  TP L KP+    +S P
Sbjct: 375 AGLLSENVRDVVSGMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRNRVSLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            D +   +D + +   R   I    ++   + Q+  
Sbjct: 435 TDSFVEPNDFEYYLLGRGAYIAPSNQSRPQDVQDTN 470


>gi|260771478|ref|ZP_05880403.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|260613604|gb|EEX38798.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio furnissii CIP 102972]
 gi|315181060|gb|ADT87974.1| Flp pilus assembly protein, secretin CpaC [Vibrio furnissii NCTC
           11218]
          Length = 489

 Score =  321 bits (823), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 114/453 (25%), Positives = 200/453 (44%), Gaps = 30/453 (6%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
                  GK +++  +K   +++      V + DP   D+V+     ++L GK +G  N+
Sbjct: 18  VYAANQSGKVVTVPHHKSTYVKLQGAASRVSLGDPEVLDIVMLKADELFLIGKRLGSTNL 77

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +     G+ + +++I +  D+  L+  L  F+ +  I V    + ++L G V + +    
Sbjct: 78  MAWDRRGQLLESINIEVTHDVNSLKAKLYEFLPNETISVHSAQNRLILSGQVSSQEKMNL 137

Query: 160 AVELSETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           A+ L+ET+ S    ++  +S +K      V+NL++I G  QV ++VT+AEV+R ++++  
Sbjct: 138 ALRLAETYASGDTADKATDSRNKEAEKTGVVNLMSIGGAQQVMIEVTVAEVQRSLVRRFD 197

Query: 215 FQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVLH 261
                   +   S    +  G                  +        +     F   L 
Sbjct: 198 SNFHFFEGNGKFSWGATSAGGYIDDITGVAGPVFNAPTIDSTGLLSTFIDGDTLFTLALD 257

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
             +     + LAEP LTA+SG  A F +GG+      +      ++   +YGV L F PT
Sbjct: 258 VAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPNRDG--ITIEYKEYGVGLKFIPT 315

Query: 322 VLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           VLS  +I L +  +VSE          P     A  +P    R A +T+EL  G TI +A
Sbjct: 316 VLSDKKINLNLAVDVSEIASSTTLTVSPSGTNAAYYIPPITRRSAASTLELADGQTIGIA 375

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GLL ++++      P +  IP+LG LF +  +   ETE+ I  TP L KP+    +  P 
Sbjct: 376 GLLSENVRDSVSKFPGIGDIPVLGQLFNSQEYVSGETELVILVTPRLAKPIDRSKVVLPT 435

Query: 432 DHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           D +    D K +   +   I GP++    +  +
Sbjct: 436 DAFVEPTDLKYYLLGQGAYIAGPRDVKRTKASD 468


>gi|51245387|ref|YP_065271.1| hypothetical protein DP1535 [Desulfotalea psychrophila LSv54]
 gi|50876424|emb|CAG36264.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
          Length = 480

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 126/490 (25%), Positives = 214/490 (43%), Gaps = 42/490 (8%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F  M+++ +      +   P   E+ A V+    +    G+ + + +N++  L+    ++
Sbjct: 7   FVRMLTVSICCLLV-MGGGPFAAESEATVL----INTKPGEPVQLTINRLAKLRSSEVIR 61

Query: 68  DVLVSDPTKADV---VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
              + +P  A++      SP  +++ GK++G   + L G   K +   +I++  D+  L+
Sbjct: 62  RAHIVNPDIAELIYSKTQSPAWVFVSGKSIGTTQLTLWGARNKILGTFEIIVRPDVLGLK 121

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             +       N+ V    D + L G V      Q+ + L+E +            +  KV
Sbjct: 122 KHIHDVFPGENVSVRDSGDFLTLTGTVAGAVRLQKILALAEAY------------APSKV 169

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---- 240
           +NLL + G  QV L+V IAE+ + +  Q+G    + GSS           G    +    
Sbjct: 170 INLLKVGGIQQVMLEVRIAEISKRVGNQLGINFGLDGSSGFGLSMLDGLSGLPGGTLPIE 229

Query: 241 --------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                     G           S+   + AL+    ++ LA+PTL A SGQSASF +GG+
Sbjct: 230 PARVLDGLNIGSGVNAVFGKSGSYIVAIDALQEDGLVKVLAKPTLIAQSGQSASFLAGGE 289

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDM 348
             +         + +    +GV L+FTPTVL  GRI L +  EVS+             +
Sbjct: 290 FPFPVAQQFDRFS-IEWKPFGVGLNFTPTVLGEGRISLLVSPEVSDLDFTNTISYAGYVV 348

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R+  T VEL    +  +AGL+K++I++  +  PLL  IPILG LFR+S++ + ET
Sbjct: 349 PSIETRRMSTVVELNDNQSFAIAGLMKNNIRESIKKFPLLGDIPILGVLFRSSKYIKNET 408

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK-----EASEVEGQ 463
           E+ +  TP LV PV   +LS P D +      +      +             A+     
Sbjct: 409 ELVVVVTPHLVTPVDGDELSLPTDSFVEPTAFELLVLGMLEGKEKQTYVENASATGANSL 468

Query: 464 NYKGAIGFIY 473
             +G  G+I 
Sbjct: 469 PLEGDFGYIV 478


>gi|258621447|ref|ZP_05716481.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|262171232|ref|ZP_06038910.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|258586835|gb|EEW11550.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|261892308|gb|EEY38294.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 488

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +   I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +   
Sbjct: 77  LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                    +   S    +  G                  E        +     F   L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434

Query: 431 DDHYSVEDDAKAFFFN 446
            D +    D K +   
Sbjct: 435 TDAFVEPSDFKYYLLG 450


>gi|258627504|ref|ZP_05722285.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258580310|gb|EEW05278.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 488

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +   I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAQGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +   
Sbjct: 77  LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                    +   S    +  G                  E        +     F   L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434

Query: 431 DDHYSVEDDAKAFFFN 446
            D +    D K +   
Sbjct: 435 TDAFVEPSDFKYYLLG 450


>gi|262165919|ref|ZP_06033656.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262025635|gb|EEY44303.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 488

 Score =  320 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 111/436 (25%), Positives = 190/436 (43%), Gaps = 30/436 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +   I  GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TARGAIQTGKVVTVPHHKSTFVVLSGKAKRVSLGDPQVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +L++ +  D+  L+  L   + D  I+V    + ++L GMV   +   
Sbjct: 77  LMAWDSRGNLIESLNVEVTHDLNSLKQKLYELLPDEPIQVHSAQNRLMLSGMVSNQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVDKNGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                    +   S    +  G                  E        +     F   L
Sbjct: 197 DSNFHFFEKNGNFSWGGTSAGGIIDDIGGVVGPVFNAPNIESTGLLGTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+             ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDKDG--VTIEYKEYGVGLKFIP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIASSNTLTLNPGTTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LFR+  +   ETE+ I  TP L KPV    ++ P
Sbjct: 375 AGLLSENVRDVTSKMPGFGDIPVLGQLFRSQNYISGETELVILVTPRLAKPVDRNKITLP 434

Query: 431 DDHYSVEDDAKAFFFN 446
            D +    D K +   
Sbjct: 435 TDAFVEPSDFKYYLLG 450


>gi|86147467|ref|ZP_01065779.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85834760|gb|EAQ52906.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 485

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 113/435 (25%), Positives = 197/435 (45%), Gaps = 27/435 (6%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             S   +  GK +++  +K   + +      V + DP   D+V+     ++L GK +G  
Sbjct: 16  TASVAALQTGKTVTVPHHKSTHVVLSGKASKVSLGDPDVLDIVILKSNEVFLIGKKLGAT 75

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N++     G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G +   Q  
Sbjct: 76  NLMAWDSRGQLIESINIEVTHDLNSLKSKLYEFLPDETIEVHSAQNRLLLSGQISNQQKM 135

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             A+ ++ET+ +    +    S S++V     +NL++I G  QV L+VT+AEV+R ++++
Sbjct: 136 NVAMRIAETYAAGQAADDSKESGSEQVAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRK 195

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHA 262
                    +S       A+      +     F +    D             F   L  
Sbjct: 196 FDANFHFFQTSGSNFSWGASSVPAGALGATPVFDIPTSTDYGILGSFIDSNTLFTFALDV 255

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTV
Sbjct: 256 AKQNGVAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTV 313

Query: 323 LSPGRIGLRIQTEVS----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           LS  +I L +  +VS          +P        +P    R A +T+EL  G TI +AG
Sbjct: 314 LSDKKINLNLAVDVSEIANSSSLTIDPGSTNATYFIPPITRRSASSTLELADGQTIGIAG 373

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LL ++++ +   +P +  +PILG LF +  +   ETE+ I  TP L KPV    ++ P D
Sbjct: 374 LLSENVRDVSNKMPGIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTD 433

Query: 433 HYSVEDDAKAFFFNR 447
            +   +D + +   R
Sbjct: 434 AFVDPNDLEYYLLGR 448


>gi|239908021|ref|YP_002954762.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
 gi|239797887|dbj|BAH76876.1| bacterial type II and III secretion system protein family protein
           [Desulfovibrio magneticus RS-1]
          Length = 528

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 124/502 (24%), Positives = 218/502 (43%), Gaps = 80/502 (15%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R      +        S   +         A      ++ V +    ++++ + K +ILQ
Sbjct: 4   RNCLPRLWARALAIALSLVLA-------APAQIVWGGVAPVAVRAAPRLALTIGKSVILQ 56

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
              D+  V V+ P  AD V+ SPR +Y+ G+  G  N+ L     K     D+ +  D +
Sbjct: 57  SDADIARVSVAQPDVADFVLLSPRQIYVTGRAPGITNLTLWDKGDKIRAVYDLDVAPDAS 116

Query: 122 HLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            L+  L   +     I V    D++ L G VR  +  ++A+ L+E +            +
Sbjct: 117 RLKKMLHDVMPGETGIEVLASQDSIALSGTVRDAESLKKALSLAEVY------------A 164

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------- 233
            KKV+NLL+++G  QV L+V +AE+ + ++ ++G   +  G  +                
Sbjct: 165 PKKVLNLLSVSGVQQVMLEVRVAEMSKSVVNRMGINLNAVGDGNFGYTLLGGLSTLADTV 224

Query: 234 ----------------FGGKFVSEGGDFSVK----------------------------- 248
                           F G   S   + +                               
Sbjct: 225 FNIDNVQNAYKYSTIKFNGSDGSSSTESATIQTRFREFNQPEQSKTVGLSQGTAAMRFST 284

Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
             G     +   VL  L++   ++ LAEP L  ++GQSA F +GG+     V S  G TS
Sbjct: 285 NWGGAGNTTMTAVLDLLKQNGLVKILAEPNLVCLNGQSAKFLAGGEIPVP-VPSGLGTTS 343

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362
           +   ++GV L FTPT ++   I L++  EVS+        +++ ++P+   R+A T+VEL
Sbjct: 344 IEWKEFGVGLKFTPT-VAGEVISLQVNPEVSDLDYTRAIKLDSFEIPAVLTRRASTSVEL 402

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T  +AGLLK++ ++  +  P +  IP+LG LF++S + ++++E+ I  T  LVKP+
Sbjct: 403 KNGQTFAIAGLLKEEGRESVDKYPWIGDIPVLGNLFKSSSYQKDQSELVILITAHLVKPL 462

Query: 423 AMRDLSRPDDHYSVEDDAKAFF 444
             +D+  P D     DD + F 
Sbjct: 463 NKKDMILPTDGVHEPDDLEFFL 484


>gi|224824213|ref|ZP_03697321.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224603632|gb|EEG09807.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 520

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 143/518 (27%), Positives = 232/518 (44%), Gaps = 68/518 (13%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
                + L +S    A   P + A           I     +++ + K   L+ PV +  
Sbjct: 19  LATCGMLLLASYSQAATTTPKRLAATPSTVAPCNAIESAPLVNVTVGKSFRLKTPVPISR 78

Query: 69  VLVSDPT-----------------------------KADVVV--HSPRTMYLFGKNVGQA 97
           +L+ +P                               ADV V   SP  +YL GK+VG  
Sbjct: 79  ILLGNPEGSQAAQPKESTDANADKGKPSAGGSTKSGVADVDVILLSPSEIYLLGKSVGST 138

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSN-IRVEMVSDTVVLHGMVRTIQ 155
           N+IL+G +G+  L  D+ +  D A L+ +L + +   +N ++V   SD++VL G V    
Sbjct: 139 NIILLGRNGQCTLV-DVAVGADTASLQASLNQLLSPGANNVKVSAASDSLVLTGTVADSA 197

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
              RA+ L+E +  +            KV+N++++    QV L+V IAE+ + +L ++G 
Sbjct: 198 KLDRAMTLAEAYAGK-----------SKVINMMSVDAPQQVLLEVKIAEISKKLLDKLGV 246

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +   +  G + S+ + F    +   G   + G+ D  +    + A      ++ LAEP
Sbjct: 247 NIAGILNHGGWTYSWNSLFANDPL---GKALLSGINDSATRAFQIDAQHDDGLLKVLAEP 303

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            L AISGQ  SF +GG+       ++T       ++   ++GV L FTPTVL  GRI L+
Sbjct: 304 NLMAISGQEGSFLAGGKIFIPVAQNNTNNGGSTITLEEKEFGVALRFTPTVLDGGRINLK 363

Query: 332 IQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE                  +PS+  R+A TTV+L  G +  + GLLK+++    
Sbjct: 364 VAPEVSELNPEGVGISAIGVAGKSILPSFTTRRAATTVQLHDGQSFAIGGLLKNNVTTNI 423

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
              P L +IPILGALFR++ F  +++E+    TP LVKP+   D   P D+Y   + A+ 
Sbjct: 424 SAFPFLGEIPILGALFRSTSFQTDKSELVFVVTPRLVKPL-PPDYKLPTDNYIPPNRAEL 482

Query: 443 FFFNRVNKIYGPK------EASEVEGQNYKGAIGFIYK 474
           F   R+             EAS     + +   GF  K
Sbjct: 483 FLGGRMEGRQPEPSASKASEASPQPEASTQAPSGFEVK 520


>gi|237678812|emb|CAQ57539.1| RhcC2 protein [Bradyrhizobium elkanii]
          Length = 484

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 128/479 (26%), Positives = 209/479 (43%), Gaps = 18/479 (3%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-KGKKISIGLNKVIIL 60
              +    + +   L       +     +              G     +++  ++   +
Sbjct: 18  SASRSAGLSRLCYVLCGFAMLFSSAAAAEIKRDGKGEPPRAAPGGTSGTLNLTSSQGKTV 77

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      + V+DPT AD    S  T+++FGK  G+ ++  +  +G+ +  L +++ + I
Sbjct: 78  HLTAAATSIFVADPTIADYQAPSNTTIFVFGKKSGRTSLFALNENGEALAELRVVVTQPI 137

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L  TLR  + D  I V       +L G     +  + A +++E FL           +
Sbjct: 138 EDLRATLRAEVGDYPIHVSYTPRGAILSGTAPNAEVVETAKKVTEQFLG----------A 187

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
              V+N + +AG  QV L V +AEV R  +K +    +   S +G       D G     
Sbjct: 188 GSLVVNKIQVAGSLQVNLSVRVAEVSRSAVKDLNIHFTA-SSPNGAFLISGKDGGSGAAG 246

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG   +       +   VL AL        LAEP LTA+SG+SASF +GG+     V  
Sbjct: 247 GGGTIGIGFSAGNTNLSAVLDALASEHLASILAEPNLTAMSGESASFLAGGEFPIP-VMQ 305

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKA 356
                SV    +GV L F PTVL+  +I +R++ EVSE        +N  ++P+   R+A
Sbjct: 306 DNRQVSVQFRQFGVSLEFVPTVLNNNQINVRVKPEVSELSSEGQVKINGMEVPALSTRRA 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T VEL SG +  + GL++ +        P L  +PILGALFR+S F + ETE+ I  TP
Sbjct: 366 STVVELASGQSFAIGGLIRRNFNNDIGEFPWLGDVPILGALFRSSSFQKRETELVIIVTP 425

Query: 417 FLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           ++V+P      +S P D  +   DA     N + +    ++A         G+ GFI +
Sbjct: 426 YIVRPGSNPSRMSAPSDRIAPPSDAGRILTNTLARPPKDRDAPRTSAPGLTGSAGFIIE 484


>gi|308050059|ref|YP_003913625.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
 gi|307632249|gb|ADN76551.1| type II and III secretion system protein [Ferrimonas balearica DSM
           9799]
          Length = 487

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 199/426 (46%), Gaps = 19/426 (4%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
              + ++K   + +    + V V +P  AD+++ +P+ +Y+ G+ +G  N+++     + 
Sbjct: 47  SFPVPIHKSKTMSLANAAERVSVGNPAIADILLINPKELYILGRQLGSTNIMVWDDQDRL 106

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +  +DI I  D+  L+  L RF+ D  I V      +V+ G V  +     A++L+  + 
Sbjct: 107 VDIVDIEITHDLNGLKEKLHRFLPDEPIEVHSSQGQLVIGGQVSNLDRMNMALDLAHGYA 166

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
             +  +   ++    V+NL+++ G  QV L+VT+ EV+R++ + +    ++     G   
Sbjct: 167 VAANNSDNTST----VLNLMSVGGGHQVMLEVTVTEVQRELARTLDSDFALVF--EGSDF 220

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                 G   +S  G F    V     F+  +   ++    R LAEP LT +SGQ A F 
Sbjct: 221 IGGLLGGDGLISNKGIFG-SYVSGDVLFDFAIDMAKQQGLARVLAEPNLTTMSGQMAEFL 279

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           SGG+            T++   ++GV + F PTVL  GRI L +   VSE       G +
Sbjct: 280 SGGEFPIPVPDRDG--TTIEYKEFGVGVKFVPTVLDSGRINLNLNVLVSELSNANAVGVI 337

Query: 349 P----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P          S   R A++T+EL  G TI +AGLL   +++  + +P L +IP+LG LF
Sbjct: 338 PEGSTTALVTPSITKRSANSTIELGDGQTIAIAGLLSSTVRESMDELPGLGEIPVLGQLF 397

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            +  +   ETE+ I  TP LV+PV    L  P D +    D   +   R++K     + +
Sbjct: 398 SSQEYRNGETELVILVTPRLVRPVDREKLVLPTDGFVDPTDLGFYLMGRLSKRDEDVQPN 457

Query: 459 EVEGQN 464
                 
Sbjct: 458 TNPNSA 463


>gi|28899193|ref|NP_798798.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153836824|ref|ZP_01989491.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|260361569|ref|ZP_05774596.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|260876726|ref|ZP_05889081.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|260898195|ref|ZP_05906691.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|260900397|ref|ZP_05908792.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|28807417|dbj|BAC60682.1| putative pilus assembly transmembrane protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149749970|gb|EDM60715.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|308089085|gb|EFO38780.1| Flp pilus assembly protein [Vibrio parahaemolyticus Peru-466]
 gi|308091468|gb|EFO41163.1| Flp pilus assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|308109123|gb|EFO46663.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ4037]
 gi|308114031|gb|EFO51571.1| Flp pilus assembly protein [Vibrio parahaemolyticus K5030]
 gi|328474270|gb|EGF45075.1| pilus assembly protein CpaC [Vibrio parahaemolyticus 10329]
          Length = 487

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 120/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           +++       G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G 
Sbjct: 16  LSVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF      ++  +++      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDIAVKIAETFALGDAADEEDDNAKDDESSVINLLSIGGAQQVTLEVTVAEVQRSLVRRF 195

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
                    S   +       GG                 F    +     F   L   +
Sbjct: 196 DSNFHFFQKSGDFTWGATTAGGGIDNIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRVTLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  K+
Sbjct: 434 VAPNDVEFYLLGKGAKL 450


>gi|27365106|ref|NP_760634.1| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|27361252|gb|AAO10161.1| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 488

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +   
Sbjct: 77  LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                   ++   S    +  G                  +        +     F   L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            D +    D K +       I      +    Q 
Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANAAAQP 468


>gi|317154605|ref|YP_004122653.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316944856|gb|ADU63907.1| type II and III secretion system protein [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 478

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 133/475 (28%), Positives = 217/475 (45%), Gaps = 32/475 (6%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R   + +  FL +   +V+ L P+  A+  V+N     +     IS+ ++K  IL     
Sbjct: 4   RPPRSFLLAFLMALAVTVSGLVPLAVADVDVLNTEAPGV-----ISLVVSKSTILTADAP 58

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V  V ++ P  A VVV SP  +Y+ G+ +G   + L    G+     D++I  D+  L+ 
Sbjct: 59  VSRVSLAQPETASVVVLSPTQIYITGRKLGTTTLTLWS-GGQVSGVYDLVITPDVTRLKR 117

Query: 126 TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +   +     ++V    +++ L G V    D    + L+E              +  KV
Sbjct: 118 MIHEILPRERSVQVLSSGESITLSGSVSNTGDLTSVLSLAEA------------EAPGKV 165

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADFGGK 237
           +NLL + G  QV L+V +AE+ R  LK++G   + T S+          S          
Sbjct: 166 VNLLRVDGVQQVMLQVRVAEMSRTALKRMGINLAATFSNFTVYSFLNNLSSLANTGSNVI 225

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +++  +  V+      +   +L AL+     R LAEP LT +SG+SA F  GG+     
Sbjct: 226 ELTDKINSVVRYNSGSTNVVGMLDALKAHGLARLLAEPNLTCVSGESADFLVGGEIPIPK 285

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
              + G  S+    +GV L FTPTVLS G I L +  EVSE            ++P+   
Sbjct: 286 -PGALGTVSIEFKPFGVGLEFTPTVLSSGAINLHVSPEVSELDYTNALRYQGYEIPAIST 344

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RKA T V+L  G +  +AGL+ + +++     P+L  IP+LG LFR+S + + +TE+ I 
Sbjct: 345 RKASTVVDLADGQSFAIAGLISESLKENNHRFPVLGDIPVLGTLFRSSDYQKNKTELVII 404

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
            T  LVKP+ M   + P D +    D + +    +    G   A+ V  Q   G+
Sbjct: 405 VTAHLVKPLDMAGQTLPGDGFKEPTDYEFYMLGLLEG-QGASPAAMVGAQARSGS 458


>gi|37680844|ref|NP_935453.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37199593|dbj|BAC95424.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 488

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/454 (24%), Positives = 195/454 (42%), Gaps = 30/454 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +   
Sbjct: 77  LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                   ++   S    +  G                  +        +     F   L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            D +    D K +       I      +    Q 
Sbjct: 435 TDAFVEPSDLKYYLLGVGAYIAESPTNANATAQP 468


>gi|320155489|ref|YP_004187868.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319930801|gb|ADV85665.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 488

 Score =  316 bits (810), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 109/436 (25%), Positives = 192/436 (44%), Gaps = 30/436 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      GK +++  +K   + +    + V + DP   D+V+     ++L G+ +G  N
Sbjct: 17  TAYGATQTGKVVTVPHHKSTFVALSGKAKRVSLGDPEVLDIVMLKSDELFLIGRKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G  + +++I +  D+  L+  L  F+ +  I+V    + ++L GMV T +   
Sbjct: 77  LMAWDSRGNLIESINIEVTHDLNSLKQKLYEFLPEEPIQVHSAQNRLILSGMVSTQEKMN 136

Query: 159 RAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S         V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYAAGQQADEATASLNSQVEKSGVINLMTIGGAQQVMLEVTVAEVQRSLVRRF 196

Query: 214 GFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRFSFETVL 260
                   ++   S    +  G                  +        +     F   L
Sbjct: 197 DSNFHFFENNGSFSWGATSAGGIIDDIGGGVGPIFNVPGIDSTGLLSTFIDGDTLFTFAL 256

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
              +     + LAEP LTA+SG  A F +GG+       S     ++   +YGV L F P
Sbjct: 257 DIAKENGVAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDSDG--VTIEYKEYGVGLKFVP 314

Query: 321 TVLSPGRIGLRIQTEVSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           T+LS  RI L +  +VSE                +  +P    R A +T+EL  G TI +
Sbjct: 315 TILSDKRINLNLAVDVSEIAASNTLTLSPGGTNASYFIPPITRRSASSTLELADGQTIGI 374

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGLL ++++ +   +P    IP+LG LF +  +   ETE+ I  TP L KP+    ++ P
Sbjct: 375 AGLLSENVRDVSSKMPGFGDIPVLGQLFSSQDYISGETELVILVTPRLAKPIDRSKITLP 434

Query: 431 DDHYSVEDDAKAFFFN 446
            D +    D K +   
Sbjct: 435 TDAFVEPSDLKYYLLG 450


>gi|260776715|ref|ZP_05885610.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260607938|gb|EEX34203.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 476

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 109/451 (24%), Positives = 195/451 (43%), Gaps = 30/451 (6%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
                 K + +  +K   + +    + V + DP   D+V+     ++L GK +G  N++ 
Sbjct: 9   AATQSSKVVKVPHHKSTHVTLVGKAKRVSLGDPEVLDIVMLKSNEVFLIGKKLGSTNLMA 68

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               G+ + +++I +  D+  L+  L  F+ D  I V    + ++L G+V +      A+
Sbjct: 69  WDSRGRLIESINIEVTHDLNSLKAKLFEFLPDEEIGVHSAQNRLILSGLVSSQSAMNIAL 128

Query: 162 ELSETFLSQSGRNQYANSSSKKV-----MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
            ++ET+ +    ++   S S++V     +NLL I G  QV L+VT+AEV+R ++++    
Sbjct: 129 RVAETYAAGQEVDKETESLSEQVSKTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKFDSN 188

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRFSFETVLHAL 263
                SS   +    +  G                           +     F   L   
Sbjct: 189 FHFFQSSGDFNWGGTSAGGSIDDVNNVVAPIFNAPTIENTGLLGTLIDSNTFFTFALDIA 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           ++    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PT+L
Sbjct: 249 KQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTIL 306

Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +  +I L +  +VSE                   +P    R A +T+EL  G TI +AGL
Sbjct: 307 TDQKINLNLAVDVSEIANSATLTLAPGGTNATYVIPPITRRSASSTLELADGQTIGIAGL 366

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L ++++     +P  S IPILG +F +  +   ETE+ I  TP L KP+    ++ P D 
Sbjct: 367 LSENVRDSVAEMPGFSDIPILGQMFNSQEYISGETELVILVTPRLAKPIDRNRVTLPTDS 426

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           +   +D + +   R   +     +     ++
Sbjct: 427 FVEPNDFEYYLLGRGAYLEPADASKPKAERS 457


>gi|153834055|ref|ZP_01986722.1| Flp pilus assembly protein [Vibrio harveyi HY01]
 gi|148869610|gb|EDL68600.1| Flp pilus assembly protein [Vibrio harveyi HY01]
          Length = 486

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 205/436 (47%), Gaps = 23/436 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++      GK +S+  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAAPAQSGKVVSVAHHQSTQLMISGKAKKVTLGDPEVLDIIVLRSNELFLVGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V T Q+
Sbjct: 76  TNVSVWDSRGRLIEQFNVEVTHDLNTLKSKLYQFLPDESIEVHSAQEKVVLRGLVSTQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              AV+++ETF +    ++  + S     V+NLL+I G  QVTL+VT+AEV+R ++++  
Sbjct: 136 MDTAVKIAETFAAGEAADEGEDDSKDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRFD 195

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALER 265
                   S   +       GG                 F    +     F   L    +
Sbjct: 196 SNFHFFQKSGDFTWGATTAGGGIDNIGPILNIPSVDDFGFLGSFIDSNTLFTFALDVARQ 255

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS 
Sbjct: 256 NGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPYILSD 313

Query: 326 GRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            RI L++   VSE                   +P    R A TT+EL  G TI +AGLL 
Sbjct: 314 KRINLKMNVNVSEIANSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLS 373

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D + 
Sbjct: 374 ENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFV 433

Query: 436 VEDDAKAFFFNRVNKI 451
             +D + +   +  ++
Sbjct: 434 SPNDVEFYLLGKGAEL 449


>gi|323491532|ref|ZP_08096711.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323314108|gb|EGA67193.1| pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 485

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 114/455 (25%), Positives = 199/455 (43%), Gaps = 30/455 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           ++      GK + +  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 17  VTYAASQSGKVVKVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDELFLIGKKLGSTN 76

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ + +I V    + ++L G +       
Sbjct: 77  LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPNESIEVHSAQNRLILSGQISNQAAMN 136

Query: 159 RAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++   S SK+     V+NL+ I G  QV L+VT+AEV+R ++++ 
Sbjct: 137 IALRVAETYSAGRQADKENKSLSKQAEKTGVINLMTIGGAQQVMLEVTVAEVQRSLVRKF 196

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----------DRFSFETVLHAL 263
               +   SS    K      G         F                    F   L   
Sbjct: 197 DANFAFFQSSGSKFKWGGTSTGATVPGATPIFEAPSTGDYGILGSFIDGNTLFTFALDVA 256

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            +    + LAEP LTA+SG  A F +GG+             ++   +YGV L F PTVL
Sbjct: 257 RQNGTAKVLAEPNLTALSGSKAEFLAGGEFPIPVPDEDG--ITIEYKEYGVGLKFIPTVL 314

Query: 324 SPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           S  +I L +  +VSE               +   +P    R A +T+EL  G TI +AGL
Sbjct: 315 SDKKINLNLAVDVSEIANSSSLTLSPGSTNSTYIIPPITRRSASSTLELADGQTIGIAGL 374

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L ++++ +   +P  S IPILG +F +  +   ETE+ I  TP L +P+    ++ P D 
Sbjct: 375 LSENVRDVANEMPGFSDIPILGQMFNSQEYVSGETELVILVTPRLAQPIDRNKVTLPTDS 434

Query: 434 YSVEDDAKAFFFNR---VNKIYGPKEASEVEGQNY 465
           +   +D + +   R   +       +A  V    Y
Sbjct: 435 FVEPNDFEYYLLGRGSYLAPASQASQAKPVAEPEY 469


>gi|149911409|ref|ZP_01900027.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
 gi|149805517|gb|EDM65522.1| Flp pilus assembly protein, secretin CpaC [Moritella sp. PE36]
          Length = 489

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 111/427 (25%), Positives = 191/427 (44%), Gaps = 20/427 (4%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + I + K   LQ+   +  V V +   AD+++   R +Y+ GK +G  N+++   D   
Sbjct: 44  SVRIPIFKSKTLQMDKAIHRVSVGNSDIADILILRSRELYIVGKRLGTTNMMVWDKDDNL 103

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +   ++ +  D+  L   L +++ + +I VE     +V+ G V ++     AVE++E + 
Sbjct: 104 VHVQNLEVTHDLNSLRKRLYKYLPNEDIGVETSQGQLVVSGQVSSLVKMNTAVEIAEGYA 163

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSS 224
           + +   +  +     V+N++++ G  QV L+VT+AEV  DI + +          +   +
Sbjct: 164 TAANVGKSNSI----VVNMMSVGGGQQVMLEVTVAEVSTDIGRNLDGNTVLGAFGSDGFA 219

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G              S   +   + +     F       +     + LAEP LTA+SGQS
Sbjct: 220 GIGTGTGNVPTNILGSIDTNIFARYLTGDMLFSVAFDVAKSKGLTKILAEPNLTALSGQS 279

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
           A F SGG++      S+    ++   D+GV + F PTVL  G+I L ++  VSE      
Sbjct: 280 AEFLSGGEYPVPV--STDDGITIEYRDFGVGVSFVPTVLDSGKINLNLKVLVSELSSVNS 337

Query: 342 -------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                     +   PS   R   TTVEL  G TIV+ GLL D +++     P L  IPIL
Sbjct: 338 VTISASDTNTSTITPSLIKRSTATTVELGDGQTIVIGGLLSDSLRESITKFPGLGDIPIL 397

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           G LF +  +   +TE+ I  TP LV+P     +  P D +    D + +   ++ +    
Sbjct: 398 GQLFTSQEYISGQTELVIMVTPRLVRPFNKDGMILPTDGFVPVSDMEFYLLGKMTQQEKG 457

Query: 455 KEASEVE 461
            +     
Sbjct: 458 SDTKNPN 464


>gi|283852073|ref|ZP_06369347.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572463|gb|EFC20449.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 527

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 143/523 (27%), Positives = 229/523 (43%), Gaps = 82/523 (15%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
            +++  L +   S           AA   ++ V +    K+S+ + K +ILQ   DV  V
Sbjct: 12  RLLAWVLVAGLASTGY--------AAPAVVAPVAVRSTPKLSLTIGKSVILQSDADVSRV 63

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V+ P  AD V+ SPR +Y+ G+  G  N+ L     K     D+ +  DI  L+  L  
Sbjct: 64  SVAQPEIADFVLLSPRQVYVTGRAPGVTNLTLWDKGDKIRAVYDLDVAPDITRLKKMLHD 123

Query: 130 FIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
            +     I V    D + L G VR  ++ ++A+ L+E +            + KKV+NL+
Sbjct: 124 VLPGEPGIEVRASQDAIALAGTVRDAENMKKALTLAEVY------------APKKVVNLM 171

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIG----------FQHSITGSSSGPSKSF-------- 230
            + G  QV L+V +AE+ + +L ++G          F +++ G  +  + S         
Sbjct: 172 AVGGVQQVMLEVRVAEMSKSVLNRMGINLNAIGDGNFAYTLIGGLTSVAGSMFNMDATQN 231

Query: 231 ----------AADFGGKFVSEGGDFSVK--------------------------GVLDRF 254
                      AD    F S     S +                          G     
Sbjct: 232 VYQYITMTAKGADGNTSFDSSPIQLSYREFNQPSNRATATMNQGTAVARWNTNWGGAGNT 291

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +   VL  L+    ++ LAEP L  ++GQ+A F +GGQ     V S  G TS+   D+GV
Sbjct: 292 AMTAVLDVLKENGLVKILAEPNLVCLNGQTADFLAGGQIPVP-VPSGLGTTSIEWKDFGV 350

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            L FTPT++   RI L++  EVS+      I +    +P+   R+  TTVEL +G T  +
Sbjct: 351 GLKFTPTIVGGDRINLQVHPEVSDLDYAHAIQLQGSTIPAINTRRTSTTVELKNGQTFAV 410

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AG+LK++ +   +  P++  IPILG LF++S+F +++TE+ I  T  L KP+  + +S P
Sbjct: 411 AGMLKEEARSTFDKYPVVGDIPILGNLFKSSQFQKDQTELVILITAHLAKPLDKKAVSLP 470

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE--VEGQNYKGAIGF 471
            D     DD + F   R +       A    V G    G  G 
Sbjct: 471 TDSAHEPDDLEFFLGIRRDGGQATPAAGPLAVSGAALDGDFGH 513


>gi|304320647|ref|YP_003854290.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
 gi|303299549|gb|ADM09148.1| putative exporter protein, cpaC [Parvularcula bermudensis HTCC2503]
          Length = 494

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 144/502 (28%), Positives = 239/502 (47%), Gaps = 42/502 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR +      +    L  + PS+A+              +       +++ + L K  I+
Sbjct: 5   MRKILSVMAGLAGAVLIGTGPSMAQPGGSTPLEFETTYDAGGNGLASREVLLPLGKAAII 64

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           ++P    D++VSDP   + V+ +P+ ++L G+  GQAN         Q+LNL+I +E+D 
Sbjct: 65  ELPRPATDIIVSDPDIVEAVIRTPQRVFLMGREAGQANAFFFDRANNQILNLEIRVEQDA 124

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   + + + ++ I VE ++  V++HG V    D+QRA E++  F  +          
Sbjct: 125 DTIRELMTKLVPNARISVESLNGNVIIHGTVDNASDAQRAGEIASRFAGE---------- 174

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFG 235
               +N+L +    QV LK+ I E++R +++Q+G   +        +  FA     A  G
Sbjct: 175 -DNFVNMLKVREPSQVLLKIKIVEMQRRLVRQLGIDLNGVAQVDRSAIEFAVQNSFAISG 233

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   + S  G  D  + +      E+   ++TLAEP++ A+SG++ASF +GG+   
Sbjct: 234 QSLGGINANLSTPGFGDITNLDFAFDIFEQNGLVKTLAEPSIVALSGRNASFLAGGEFPV 293

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------------- 341
               S+ G  SVT   +GV L F P V S  RI L + TEVS+                 
Sbjct: 294 PEA-SANGTPSVTFKPFGVQLEFQPVVYSKNRIQLTLATEVSDVSNVNGLSIAGATQAEE 352

Query: 342 ----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                           +P    R A TTVELPSGG++ LAGLL++DI ++ +G+P L + 
Sbjct: 353 DPDTGEIIEQTFEGFIVPGTVSRSAATTVELPSGGSLALAGLLQEDINEVIDGVPGLKET 412

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGALFR+  F  ++TE+ I ATP+LV+P  +  L+ P   Y+     ++    ++   
Sbjct: 413 PVLGALFRSQEFQSQQTELVIIATPYLVEPTDLAALTDPAQGYAPPSPVQSVILGQLESA 472

Query: 452 YGPKEASEVEGQNYKGAIGFIY 473
           YG +     + Q   G IGFI 
Sbjct: 473 YGVRGRKARDAQ-LSGPIGFIL 493


>gi|197295153|ref|YP_002153694.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|195944632|emb|CAR57236.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 644

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 123/439 (28%), Positives = 215/439 (48%), Gaps = 18/439 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+
Sbjct: 92  GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  +   +G           V+N+LN+    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIAHAYGDSAGDAAGGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 270

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F     A      ++ LAEP L  I
Sbjct: 271 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSIAADAQNTDNLVKILAEPNLVTI 326

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   +    +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVYATGNM 506

Query: 449 NKIYGPKEASEVEGQNYKG 467
               G ++A     Q   G
Sbjct: 507 EGRGGVRKAGAQPMQPANG 525


>gi|78060314|ref|YP_366889.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77964864|gb|ABB06245.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 652

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 118/429 (27%), Positives = 210/429 (48%), Gaps = 18/429 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 92  GAVRESTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + + +  +I V   + T+VL G V +   +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLMQLMPNERDIHVSTAAGTIVLAGTVSSSMAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           ++++  +   +G       +   V+N+LN+    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 MQIARAYGDSAGDPAGGGKAGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      +           +   F     A      ++ LAEP L  I
Sbjct: 271 GGFGSWSGALVSNLLAGVATG----IAFSKANNKPFNLAADAQNTDNLVKILAEPNLVTI 326

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EVS
Sbjct: 327 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLSNGRISLKVAPEVS 386

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G T  + GL+KD+     + +P +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMGDGETFAIGGLIKDNGTGALKALPGV 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            +IP+LGAL R++ F ++ TE+    TP LVKP+   D+  P D +S  ++   +    +
Sbjct: 447 GEIPVLGALLRSTSFQQDRTELIFVITPHLVKPLQTADVPLPTDSFSKPNEVDVYATGNM 506

Query: 449 NKIYGPKEA 457
               G ++ 
Sbjct: 507 EGRGGVRKP 515


>gi|91788411|ref|YP_549363.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91697636|gb|ABE44465.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 514

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 224/488 (45%), Gaps = 42/488 (8%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGK--------GKKISIGLNKVIILQVPVDVQ 67
           L + NP  A   P K+A  A       +             +I++   K  ++++P    
Sbjct: 40  LAAKNPPTATSGPGKQAATAQPKAVVTQARAPITGKVELAPQINLSEGKSTLMRLPSPAT 99

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V D    DV++ +P  +Y+ GK+VG  N+IL          +DI +  D   L   L
Sbjct: 100 RLSVGDARIVDVILLNPSELYMLGKSVGSTNLILWNKANDA-TIIDIAVGMDTVALRSRL 158

Query: 128 RRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------- 179
            +  A   ++++   +DT++L GMV  +  + + + ++  ++ +S R+  A         
Sbjct: 159 EQMFASEKDLKITTAADTLILSGMVSDVVKADQILSVANAYVQRSSRSGQAGGASGGSAG 218

Query: 180 ----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                S KV+N+L+IA   QV L+V +AEV + +  Q+G       ++   + +  ++  
Sbjct: 219 GQQSDSAKVVNMLSIAAPQQVMLEVQVAEVSKTLADQLGASIGGRKTTGSWTYTLLSNLL 278

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               S  G     G          + A +    ++ LAEPT+ AISGQ ASF +GG+   
Sbjct: 279 TGAASSIGAVKNSGNF------LTIDAQKGDGLLKILAEPTIMAISGQEASFLAGGKIFI 332

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAG 346
              S + G  ++   ++GV + F PTVL  GRI L++  EVS+                 
Sbjct: 333 PVKSGNNGEIALEEKEFGVSVKFLPTVLEGGRINLKVAPEVSDLNRQGVGISATGSSTTA 392

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+  R+A TTV+L  G +  + GL+K+++       PLL ++P+LGALFR+S F  +
Sbjct: 393 ILPSFTTRRASTTVQLFDGQSFAIGGLIKNNVTANINAFPLLGEVPVLGALFRSSDFQTD 452

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +E+    TP LVKP+   D   P D Y     ++ F   ++     P E ++  G    
Sbjct: 453 RSELVFIVTPHLVKPL-PADYKLPTDPYIQPSRSEFFLGGKMEGA-APPEGNKPAGPAT- 509

Query: 467 GAIGFIYK 474
              GF  K
Sbjct: 510 ---GFEVK 514


>gi|107028248|ref|YP_625343.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116687159|ref|YP_840406.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|105897412|gb|ABF80370.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116652874|gb|ABK13513.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
          Length = 642

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+
Sbjct: 92  GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  +   S  +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F     A      ++ LAEP L  I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325

Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       S +    + ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F    +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505

Query: 449 NKIYGPKEASEVEGQNYKG 467
               G ++A     Q   G
Sbjct: 506 EGRGGVRKAGAQPMQPANG 524


>gi|170734868|ref|YP_001773982.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|169820906|gb|ACA95487.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 646

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 122/439 (27%), Positives = 215/439 (48%), Gaps = 19/439 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G  VG  N+I+
Sbjct: 92  GAVRESTSVAVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLAVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + + +  +I V   + T+VL G V + Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQASLLQLMPNERDIHVSTAAGTIVLAGTVSSSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  +   S  +         V+N+LN+    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIAHAY-GDSAGDAAGGKQGGGVLNMLNVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F     A      ++ LAEP L  I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 325

Query: 281 SGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       S +    + ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSGSNGVSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 386 ELSQTGVTLSASNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGALKAIPGV 445

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP+   D++ P D +S  ++   F    +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQTADVALPTDSFSKPNEVDVFATGNM 505

Query: 449 NKIYGPKEASEVEGQNYKG 467
               G ++A     Q   G
Sbjct: 506 EGRGGVRKAGAQPMQPANG 524


>gi|300021854|ref|YP_003754465.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299523675|gb|ADJ22144.1| type II and III secretion system protein [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 550

 Score =  312 bits (800), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 177/537 (32%), Positives = 258/537 (48%), Gaps = 77/537 (14%)

Query: 11  MMSIFLFSSNPSVAKLPPIKE---------------ANAAVINISDVEIGKGKKISIGLN 55
           + +  L S+ P+ A+                       + V       +   K I IGL 
Sbjct: 18  VFAAVLTSAAPTSAQSRAADRLSVRADRGDPEFSKNTQSIVRISESEGLPVRKSIKIGLG 77

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K ++++ P  V+DV+ S+P   D VV S   ++L GK  GQ+N     + G+Q+  +++ 
Sbjct: 78  KSVLIEFPNGVRDVMASNPAVVDAVVLSSNRVFLLGKAPGQSNAFFFSNKGEQLALIELN 137

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           ++++   LEM LRR I  S I+VE ++ T +L G V++  DS RA  ++  F+SQ   N 
Sbjct: 138 VDQEGDGLEMLLRRVIPGSEIKVETLNQTAILTGRVKSPSDSARASRIAAQFMSQMIANW 197

Query: 176 YAN--------------------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
            +N                       K V+NLL +  E+QV LKVT+AEV+R +LKQ+G 
Sbjct: 198 ASNVSLTSSGSGQQNKAGEVKDADDVKSVINLLTVEAEEQVMLKVTVAEVKRTLLKQLGI 257

Query: 216 QHSITGSSSGPSKSFAA------------------------------------DFGGKFV 239
                 SS   S +                                       + G    
Sbjct: 258 NLGGVLSSGSFSTTLLTENAFPISTAQGLGSLPTFGVGTAASAACAVGQICAFNPGPATG 317

Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           + G    V G  +   + ++ + ALER   I+TLAEP LTAISG+ A F +GG+  Y T 
Sbjct: 318 AFGNSGLVSGWGNSRNNIQSAVRALERDGLIKTLAEPNLTAISGEPAEFLAGGEVPYVTG 377

Query: 299 SSS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
             + TG ++V    +GV L FTP VL+ GRI L+I T VS+    V     P +  R+A 
Sbjct: 378 VDTQTGVSAVAFKKFGVQLAFTPVVLTEGRISLKIDTSVSDISQYVAGN--PVFDTRQAK 435

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T VELPSGG++ LAGL+    QQ  +G+P    IPILG LFR+  F  +E+E+ +  TP+
Sbjct: 436 TVVELPSGGSLALAGLISTKTQQNIDGLPGAKDIPILGTLFRSRDFQNDESELVVIVTPY 495

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           LV+PVA + LS P D      D KA F   +N+IYG  E         KG  GFI +
Sbjct: 496 LVQPVARQQLSAPTDGLYPATDLKADFLGHLNRIYGKSE--VQPSGGLKGDYGFIVE 550


>gi|94309592|ref|YP_582802.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93353444|gb|ABF07533.1| Flp pilus assembly protein secretin CpaC [Cupriavidus metallidurans
           CH34]
          Length = 620

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 115/447 (25%), Positives = 215/447 (48%), Gaps = 21/447 (4%)

Query: 19  SNPSVAKLPPIKE-ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              S+A +P     A  A        I     + + + K  ++ +P  V++  + +P   
Sbjct: 60  MTISMAPVPAAPSIAADARGPNCSGAIRNESSVIVPIGKSQLIPLPEPVRNRTLGNPNVV 119

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NI 136
              + SP+T+Y+ G++VG  N+I+ G  G     +++++  D   L+ +L + +     I
Sbjct: 120 QATMVSPQTLYVLGRSVGTTNMIVQGRSGGC-SIINVVVNADSNGLQTSLAQLLPGESGI 178

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV   +D +VL G V + Q + +A+++++ + + +  +  AN     V+N++++    QV
Sbjct: 179 RVMTAADNLVLTGSVSSSQAALQAMDIAQAYANAAQGD-GANGKKGGVLNMMSVDTPQQV 237

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V +AEV + +L Q+G   +I G     +    ++     ++           +   F
Sbjct: 238 MLEVKVAEVSKTLLNQLGSAVNIQGGFGSWTGGVISNL----LTGAAAGIFGSKANNKPF 293

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDY 312
              + A +  + ++ LAEP L  ISGQ ASF +GG+       S         ++   ++
Sbjct: 294 NLAIDAQKNDSLVKVLAEPNLVTISGQEASFLAGGKIYIPVAQSNALGGASTITLQEEEF 353

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELP 363
           GV L FTPTVL+ GRI L++  EVSE                  +P    R+A TTV++ 
Sbjct: 354 GVGLKFTPTVLANGRIHLKVSPEVSELSPTGATVSGSTLTGQTILPLITTRRASTTVQMR 413

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G +  + GLL+D  +   + +P   ++P+LG LFR+++F ++ TE+    TP LVKP+ 
Sbjct: 414 DGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQFQQDLTELVFIITPHLVKPMQ 473

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
            ++   P D ++  D    +F   +  
Sbjct: 474 TQNYPLPTDGFTTPDPLSLYFMGNMEG 500


>gi|260462607|ref|ZP_05810813.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259031513|gb|EEW32783.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 478

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/484 (24%), Positives = 213/484 (44%), Gaps = 33/484 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +Q ++  M +  L      +        A+       DV      ++ + +++ + +QV 
Sbjct: 1   MQGSWLRMGAAALSCLGALLLTSLAADAAD----RFIDVSNPSVHRVFLPMSQSVTIQVN 56

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            ++ D++V D   AD    + RT+Y+ GK  G   V L   D + +  + I +  D++ +
Sbjct: 57  ANLGDIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSTDKRSLGVIQIEVGVDVSDM 116

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              +R+    S I +  ++  V L G V+     +  +++++ +                
Sbjct: 117 AQAIRQVSPRSRIEIGSINGKVRLGGHVKDGATLEAIMQVAQQY------------GPDA 164

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
           ++N + +    QV L+V + E +R+  + +G      GSS+    +  A         G 
Sbjct: 165 IINSVTVDDSQQVNLEVRVLEAKRNAGRDLGVSFRSRGSSATIFGTGIAATTPPGADPGT 224

Query: 243 ------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                            + +      + ++ ALE    +RTLA P LT +SG+ ASF +G
Sbjct: 225 LVTGLLSKTNPFASLITQIIDSNIKVDLIIEALEAKGVVRTLANPNLTTLSGEPASFNAG 284

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           GQ   ++V +  G   +    +GV L FTP VL+  +I + +  EVS+     +AGD P 
Sbjct: 285 GQVPIRSV-TKDGLIQIEYKQFGVNLQFTPIVLADDKIHISLAPEVSDLTGFTSAGD-PI 342

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  RK DT VEL  G +  + GLL     +L+  +P L ++P++G LFRNS   +EETE+
Sbjct: 343 FTNRKLDTVVELRDGQSFAVGGLLSSKTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETEL 402

Query: 411 FIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
            +  TP +V+PV     L+ P D     +D + F   ++  +          G    G  
Sbjct: 403 VVIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRKYETGDGVTGPY 461

Query: 470 GFIY 473
           G + 
Sbjct: 462 GHML 465


>gi|78062906|ref|YP_372814.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77970791|gb|ABB12170.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 460

 Score =  312 bits (799), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 141/489 (28%), Positives = 226/489 (46%), Gaps = 45/489 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +S  + A+     +A AA              +SI   K  +L
Sbjct: 1   MVRMVRWIACWCLACIVASGSAFAQGARAPDAGAA--------------LSIATGKGELL 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P     + V+DP  AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLPEPATAMFVADPAIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRKTVIVQVDT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+  L        + V     ++++ G V +  D+   ++    +L            
Sbjct: 107 ASLQGVLDSRFPQLKLSVSGAPGSLMVSGKVPSAADADAVMQSLTPYLHDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
            +K++N L ++   QV L+V + EV R+I +Q+G   S  G +             F   
Sbjct: 158 -EKIVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSSLGGAGNFVGGLFNGRTLFDPT 216

Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            G   +S  G FSV G     R+S + VL AL++   I  LAEP LTA+SG++ASF +GG
Sbjct: 217 NGLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276

Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           +         SSTGA +V    +GV L FTPTVL+  RI L+++ EVSE      +    
Sbjct: 277 EIPIPVAQAGSSTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDTNNSVTTGG 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ DTTVEL SG +  + GLL+         IP L ++PI+G LF +  F  
Sbjct: 337 VKVPGLTVRRVDTTVELSSGQSFAIGGLLQSQTADTVSQIPGLGRLPIIGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVE-DDAKAFFFNRVNKIYGPKEASEVEGQN 464
            +TE+ +  TP++V+P     L +  D  +    D +    + +       +        
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQAIDTVARPSSDLEFAVQHNLGLDLLSGDT-----PR 451

Query: 465 YKGAIGFIY 473
             GA GF+Y
Sbjct: 452 LVGAAGFVY 460


>gi|16127175|ref|NP_421739.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|221235976|ref|YP_002518413.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
 gi|7208425|gb|AAF40192.1|AF229646_4 CpaC [Caulobacter crescentus CB15]
 gi|13424571|gb|AAK24907.1| pilus assembly protein CpaC [Caulobacter crescentus CB15]
 gi|220965149|gb|ACL96505.1| outer membrane pilus secretion channel cpaC [Caulobacter crescentus
           NA1000]
          Length = 560

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 142/502 (28%), Positives = 236/502 (47%), Gaps = 70/502 (13%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A   V  I          + +   K  I+++P +V+D+LV++P  AD V+   R +Y+ G
Sbjct: 70  AEDQVARIVMTADQTAATLELAKGKSAIVELPSEVRDLLVTNPQIADAVLRDKRRIYIVG 129

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
              G  +       G+++L+L I + + +  L   L + + D+ I V  + D+VVL G V
Sbjct: 130 LAEGTTDAAFFDTAGRRILSLSIRVSQPVDQLAAMLGKILPDAKITVSPIRDSVVLSGTV 189

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           RT  +++ A  ++  F+             +KV+N++++AG+DQV L+V I EV+R+++K
Sbjct: 190 RTASEAESAARIAAQFVGS----------PEKVLNMISVAGKDQVMLQVRIVEVQRNVIK 239

Query: 212 QIGFQHSI-------------TGSSSGPSKSFAADF------------------------ 234
           Q+G   +                   G + S                             
Sbjct: 240 QLGVDLNAVIGQLGETQYTFGMAPGYGVNGSLLGGVTGGYKMDTTKQPVMQTPCTGPGWT 299

Query: 235 ----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                     GG         S  G     S + ++ A ER   +RTLAEP L A+SG+S
Sbjct: 300 AGSLCPVVARGGGNSDTATIQSTAGDPGLNSAKGMIQAFERVGLVRTLAEPNLAAVSGES 359

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
             F  GG+    T S ++G  ++    YGV L +TP VLS GRI L++ TEVSE      
Sbjct: 360 GKFLVGGEFPVPTGSDTSGKVTIEFKPYGVGLGYTPVVLSGGRISLKLSTEVSELSSLGA 419

Query: 342 ---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                    G     +P   VR+ ++TVELPSGG+++LAGLL+   ++  + +P ++ +P
Sbjct: 420 FSMSTGTSSGSTNLTVPGLSVRRVESTVELPSGGSLMLAGLLQQTTKETIDSLPGMTSMP 479

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           ILG+LFR+  F   +TE+ +  TP+++ P   ++L  P D      D       R+NK+ 
Sbjct: 480 ILGSLFRSRDFLNNQTELVVIITPYIIDPTRPQNLQTPADGLQFASDMGTVLLGRLNKVV 539

Query: 453 GPKEASEVEGQNYKGAIGFIYK 474
               A    G+ Y+G +G++ +
Sbjct: 540 KAP-AGANAGRAYQGPVGYVIE 560


>gi|83312840|ref|YP_423104.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
 gi|82947681|dbj|BAE52545.1| Flp pilus assembly protein, secretin CpaC [Magnetospirillum
           magneticum AMB-1]
          Length = 495

 Score =  312 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 144/461 (31%), Positives = 245/461 (53%), Gaps = 24/461 (5%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
                      ++  +     + + + + K I L +P  V++V++ +   ADV+V +P  
Sbjct: 46  AAPSPRPGTPQSLRGLSSAAAESMQVPVGKSIDLPLPGAVKEVVIGNSDIADVIVRTPHM 105

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145
           +++ G+ VGQ NV L+   G+ M  +D+ +  D   ++  LR  + +   I VE V+D++
Sbjct: 106 VHITGRAVGQTNVFLMDRSGRVMRRIDLAVAIDSQAVKDALRAVLPEERAITVEAVADSL 165

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G V+    ++ A  ++  F++  G          K++N++ +  E QV L V +AE+
Sbjct: 166 YLSGSVKNDGAARDAKMVARRFVADDG----------KLVNMIRVVNEQQVLLHVKVAEI 215

Query: 206 RRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           +R +LK++GF        S+ G++S  S + ++  G    S    F    V    +    
Sbjct: 216 QRTVLKELGFGLTANKSISLPGTASLSSFTTSSTVGLIDSSSTAIFGTATVTGLGALAAN 275

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
            + LE    IRTL EP LTA+SG++A+  +GG+     VS++ G+ SV    YGV+L FT
Sbjct: 276 FNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIP-VSTTNGSISVEFKPYGVLLSFT 334

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           P VL PGR+ L++ TEVS               +P+++VR+A +TVELPSGG+I++AGLL
Sbjct: 335 PVVLDPGRLSLKMSTEVSAIDTANKTAITTTISVPAFKVRRAGSTVELPSGGSIMIAGLL 394

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++DI     G+P L  +P+LGALFR++ F R ETE+ +  + ++++PV   +LS P+D +
Sbjct: 395 QNDITANIAGLPGLMDLPVLGALFRSNAFQRNETELVVILSAYVIRPVDQPNLSTPNDGF 454

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEV-EGQNYKGAIGFIYK 474
           +   D K F   R+   Y  +   E       +G  G I +
Sbjct: 455 APSSDLKRFLLGRLQDTYTTRGKGEPAAPPALQGPYGHIVQ 495


>gi|82703477|ref|YP_413043.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411542|gb|ABB75651.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 574

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/503 (25%), Positives = 216/503 (42%), Gaps = 49/503 (9%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG-------KGKKISIGLNKVIIL 60
              ++ I L  S    A              ++  +             + +   K  +L
Sbjct: 41  ITVLLGITLGLSGELSAANQTAAGQAMGRPMVAAAKPAGPVEGLLAASDMDVTYGKSALL 100

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG----KQMLNLDILI 116
           ++P  V  + V +P  ADV + SP  +Y+ GK++G  NVIL    G     Q   +++ +
Sbjct: 101 RLPAPVTRISVGNPDVADVTLISPGEIYVLGKSIGTTNVILWTRGGLAGSSQTAVINVTV 160

Query: 117 ERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ----- 170
             D A L+  LR  +    +I+V    D++VL G V     + RAV L++ ++       
Sbjct: 161 ILDAAALQAKLRELMPGETDIKVTAAGDSLVLSGTVSDTLKADRAVALADAYVRAAAGGQ 220

Query: 171 --------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                                 +       S +V+NLL +    QV L+V +AE+ R + 
Sbjct: 221 GGQRGGKQGGDASGGQGGGDEPKGAGQGLGSVQVVNLLQVGSNQQVMLEVKVAEINRKVA 280

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           +++GF        +G + +      G      G               ++ A ++     
Sbjct: 281 ERLGFDFQRAARKAGSAWTQI--MTGIIGGAPGMLFQSRGTPEIGDAFLIDAEKKDELFH 338

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP + AISGQ ASF  GG+ +      +   T + +  +GV L FTPTVL  GRI L
Sbjct: 339 ILAEPNIVAISGQEASFLVGGEVMIPIPQYAGVIT-LQSRQFGVGLRFTPTVLEEGRINL 397

Query: 331 RIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            +  EV+E V               +P++  R+  TTV+L  G ++ + GLL+D+I++  
Sbjct: 398 VVSPEVTELVKFDTIATTGLGGVLAVPTFTTRRVSTTVQLRDGQSLAIGGLLQDNIKETI 457

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           +  P+L +IPILGALFR+S F +++TE+ +  TP L+KP+   D + P D +   D    
Sbjct: 458 KRFPVLGEIPILGALFRSSDFQKDKTELMVVVTPRLIKPLQP-DYALPTDAFVQPDRPDF 516

Query: 443 FFFNRVNKIYGPKEASEVEGQNY 465
            F  R+           +    Y
Sbjct: 517 LFDGRMEGSPTGLLPKGMPASEY 539


>gi|46201037|ref|ZP_00207939.1| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 480

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 146/468 (31%), Positives = 238/468 (50%), Gaps = 26/468 (5%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
             A   P +   A              + + + + K + L +P  V++V++ +   ADV+
Sbjct: 24  LGAPSGPGQAQRAGTPRSLLGATAASAESMQVPVGKSVDLTLPGAVREVVIGNSDIADVM 83

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVE 139
           V SP  +++ G+ VGQ NV L+   G+ M  +D+ +  D   +   LR  + D   I VE
Sbjct: 84  VRSPNLVHITGRAVGQTNVFLVDRAGRVMRRIDLNVSIDSQAVRDALRAVLPDERAINVE 143

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            V+D++ L G V+    ++ A  L+  F+++            K++NLL +  E QV L 
Sbjct: 144 AVADSLYLSGSVKNDAAARDAKMLARRFVAEDA----------KLVNLLRVVNEQQVLLH 193

Query: 200 VTIAEVRRDILKQIGFQHSIT-------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           V +AE++R +LK++GF  +          S  G     ++  G    S    F    +  
Sbjct: 194 VKVAEIQRTVLKELGFGLTANKGIPLIGSSVLGSGSKTSSTVGLIDSSSTAIFGTATITG 253

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +    L+ LE    IRTL EP LTA+SG++A+  +GG+        + GA SV    Y
Sbjct: 254 IGALAANLNILENQGLIRTLVEPNLTAVSGETATMLAGGELPIPIS-QTNGAVSVEFKPY 312

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGT 367
           GV+L FTPTVL PGR+ L++ TEVS           ++  +P+++VR+A +TVELPSGG+
Sbjct: 313 GVLLSFTPTVLDPGRLSLKMSTEVSAIDNNNKTAISSSISVPAFKVRRAGSTVELPSGGS 372

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           I++AGLL++DI     G+P L  +P+LG LFR++ F R ETE+ +  + ++V+PV    L
Sbjct: 373 IMIAGLLQNDITSNITGLPGLMDLPVLGLLFRSNAFQRNETELVVILSAYVVRPVEQPVL 432

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE-GQNYKGAIGFIYK 474
             P+D ++   D K F   R+   Y  +         + +G  G I +
Sbjct: 433 GTPNDGFAPSSDLKRFLLGRLQDTYTKRSRELPATPPSLQGPYGHIVQ 480


>gi|114799376|ref|YP_761691.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
 gi|114739550|gb|ABI77675.1| pilus assembly protein CpaC [Hyphomonas neptunium ATCC 15444]
          Length = 535

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 148/541 (27%), Positives = 250/541 (46%), Gaps = 77/541 (14%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            RT   +    + +  P+   L                +    +++++G++K +I+ +  
Sbjct: 1   MRTIKALTCAAIVAILPAPFALAQTIPNGMGTSITKPGDQAVSRRVTLGVDKSMIVDLEA 60

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
              DV++S+P  AD VV + + +   G   GQ N ++    G  +L+L+I++E D+A LE
Sbjct: 61  PAADVVISNPEIADAVVQTAQRIIFRGIKFGQTNALIFDRAGNTLLDLNIMVETDLAALE 120

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            T+ R I D+ +++E  + +V+L GMV  +  S +  +L + F  +S           ++
Sbjct: 121 ETISRHIPDARVKIESFNGSVILTGMVDNLSQSDQVSQLVKAFFPESAGGGEL-----QI 175

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219
           +N+LN+   DQV L+V I E++R ++KQ+G   S                          
Sbjct: 176 VNMLNVNAADQVMLEVRIVEMQRSVIKQLGINLSGATSFGELANQTLQQVFQGGLPLFFD 235

Query: 220 ---------------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
                                         S+    +      G    E G  +      
Sbjct: 236 PDSGEYNTTGQGTAVEMLQPAGPSSNTISGSASSGFNVQGQALGGISLETGYTNYNNGRL 295

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           + S    + A+ER   +RTLAEP + A+SG+SA F +GG+       +  G  +V    Y
Sbjct: 296 QSSIGAAIDAMERVGIVRTLAEPNIVAMSGESAKFLAGGEFPVPVGQNQNGQITVEFKPY 355

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-------------------VNAGDMPSYRV 353
           GV L FTP VLS GRI L++ TEVSE                       +    +P+  V
Sbjct: 356 GVGLAFTPVVLSEGRISLKVSTEVSELTSQGAFQGAAQTITDGDGNTTIIQGATLPALSV 415

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A++ VELPSGG++++AGL+    +Q  + +P L K+PILG+LF++  F  EETE+ + 
Sbjct: 416 RRAESVVELPSGGSMMMAGLISVKDRQTIDQLPGLKKLPILGSLFQSRDFLSEETELVVM 475

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            TP+LV       +  P D Y+   DAK  FF ++N+ YG   A  ++  +Y+  +GF+ 
Sbjct: 476 VTPYLVGATNKASMVTPADGYANASDAKTIFFGKLNETYGRDGAP-IKPDDYRAPVGFME 534

Query: 474 K 474
           +
Sbjct: 535 E 535


>gi|325525578|gb|EGD03368.1| flp type pilus assembly protein [Burkholderia sp. TJI49]
          Length = 545

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 122/433 (28%), Positives = 214/433 (49%), Gaps = 18/433 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 91  GAVRESSSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 150

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L++ + +  +I V   + T+VL G V   Q +Q+A
Sbjct: 151 QGRSGACR-VIDVAVGADAGGLQTSLQQLMPNERDIHVSTAAGTIVLAGSVSNSQAAQQA 209

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V ++  +   +G           V+N+L++    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 210 VAIARAYGDSAGSGDAGGKPGSGVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S           +R  F+    A      ++ LAEP L  I
Sbjct: 270 GGFGSWSGALVSNLLAGVASG----IAVSKSNRRPFQIAADAQNTDNLVKILAEPNLVTI 325

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS G  +       ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGGNATTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E               A  +P    R+A TTV++  G +  + GL+KD++    + IP +
Sbjct: 386 ELSSTGVTLSATNVSGASILPLITTRRASTTVQMNDGESFAIGGLIKDNVTGALKAIPGV 445

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP+ + D+  P D +S  ++A  +    +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPMQIADVPLPTDSFSKPNEADVYATGNM 505

Query: 449 NKIYGPKEASEVE 461
               G +      
Sbjct: 506 EGRRGVRRQGAEA 518


>gi|167589424|ref|ZP_02381812.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 460

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 135/488 (27%), Positives = 226/488 (46%), Gaps = 43/488 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +   + A+   + +A A               +++   K  +L
Sbjct: 1   MVRMVRWIALWCMACVAAPGVAFAQRASVPDAGAP--------------LTLAAGKGDLL 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P     + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLPEPAATMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQADT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L+  L        ++V     ++++ G V +  D+   ++    +L            
Sbjct: 107 PSLQRVLDSRFPQWQLKVSGAPGSLMVSGKVPSGADADAVMQSLAPYLQDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
            +K++N L ++   QV L+V + EV R+I +Q+G   S  G S             F   
Sbjct: 158 -EKLVNRLTLSRPIQVNLRVRVTEVSRNITQQLGINWSGLGGSGNFIGGLFNGRTLFDPT 216

Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                +S  G FSV G     R+S + VL AL++   I  LAEP LTA+SG++ASF +GG
Sbjct: 217 TSLFNLSPTGAFSVLGGFRAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGETASFLAGG 276

Query: 292 QHLYKTVSS--STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
           +       S  +TGA +V    +GV L FTPTVL+  RI L+++ EVSE     +     
Sbjct: 277 EIPIPVAQSGTTTGAITVEFKPFGVSLDFTPTVLAENRISLKVRPEVSEIDPTNSVTTGG 336

Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+  VR+ +TTVEL SG +  + GLL+     +   IP L ++P+LG LF +  F  
Sbjct: 337 VKVPALSVRRVETTVELSSGQSFAIGGLLQSQTSDVVSQIPGLGRLPVLGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +TE+ +  TP++V+P     L +  D  +       F   R   +         +    
Sbjct: 397 NKTEVVVIVTPYIVQPAGPGQLEQAIDTVARPSSDLEFAVQRNLGLDLLSG----DTPRL 452

Query: 466 KGAIGFIY 473
            GA GF+Y
Sbjct: 453 VGAAGFVY 460


>gi|12620550|gb|AAG60826.1|AF322012_131 RhcC2 [Bradyrhizobium japonicum]
          Length = 484

 Score =  310 bits (794), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 127/476 (26%), Positives = 211/476 (44%), Gaps = 21/476 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L R  + +    L    P  A     ++    +   +         ++I  ++   + + 
Sbjct: 25  LNRLCYLLCGFALL--FPLAASAETKRDGKGEMPRAAPG--STTGTLNITSSQGKTVHLS 80

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                + V+DP  AD    S  T+++FGK  G+ ++  +  +G+ +  L I++ + +  L
Sbjct: 81  APAATIFVADPAIADYQAPSSSTIFVFGKKSGRTSLFALNENGEALAELRIVVTQPLEDL 140

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L+  + D  I+V       +L G+       + A +++E F+           +   
Sbjct: 141 RAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVEAARKVTEQFVG----------AGAP 190

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+N + +AG  QV L V +AEV R  +K +    + +G + G   +     G      GG
Sbjct: 191 VVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFTASGPN-GAFLATGKPGGSGRAGGGG 249

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +       +   VL AL        LAEP LTA+SG++ASF +GG+     V     
Sbjct: 250 TIGIGFSTGNINLSAVLDALASEHLASILAEPNLTAMSGEAASFLAGGEFPIP-VMQDNR 308

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTT 359
             SV    +GV L F PTVLS  +I +R++ EVSE        +N   +P+   R+A T 
Sbjct: 309 QVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSELSTEGEVKINGMAVPALSTRRASTV 368

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL SG +  + GL++ +        P L  +PILGALFR+S F + ETE+ I  TP++V
Sbjct: 369 VELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPILGALFRSSSFQKRETELVIVVTPYIV 428

Query: 420 KP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +P      +S P +  +   DA     N V +    ++A         G  GFI +
Sbjct: 429 RPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQGRDAPRASAPGLTGNAGFIIE 484


>gi|148976662|ref|ZP_01813349.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
 gi|145964013|gb|EDK29271.1| Flp pilus assembly protein, secretin CpaC [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 111/438 (25%), Positives = 196/438 (44%), Gaps = 27/438 (6%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +  +K   + +      V + DP   D+V+     ++L GK +G  N++     G+ + +
Sbjct: 1   MPHHKSTHVVLSGKASKVSLGDPEVLDIVILKSNEVFLIGKKLGATNLMAWDARGQLIES 60

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           ++I +  D+  L+  L  F+ D  I V    + ++L G +   Q    A+ ++ET+ +  
Sbjct: 61  INIEVTHDLNSLKAKLYEFLPDETIEVHSAQNRLLLSGQISNQQKMNVAMRIAETYAAGQ 120

Query: 172 GRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
             ++   S S++     V+NL++I G  QV L+VT+AEV+R ++++         +S   
Sbjct: 121 AADETKESGSEQAAATGVINLMSIGGAQQVMLEVTVAEVQRSLVRKFDANFHFFQTSGSN 180

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLD----------RFSFETVLHALERATAIRTLAEPT 276
                A      +     F +    D             F   L   ++    + LAEP 
Sbjct: 181 FSWGGASVPAGVLGATPIFDIPTSTDYGILGSFIDSNTLFTFALDVSKQNGVAKVLAEPN 240

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTA+SG  A F +GG+             ++   +YGV L F PTVLS  +I L +  +V
Sbjct: 241 LTALSGSKAEFLAGGEFPIPVP--DDDGITIEYKEYGVGLKFIPTVLSDQKINLNLAVDV 298

Query: 337 S----------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           S          +P        +P    R A +T+EL  G TI +AGLL ++++ +   + 
Sbjct: 299 SEIANSSSLTIDPGTTNATYFIPPITRRSASSTLELADGQTIGIAGLLSENVRDISNKML 358

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            +  +PILG LF +  +   ETE+ I  TP L KPV    ++ P D +   +D + +   
Sbjct: 359 GIGDVPILGQLFNSQEYVSGETELVILVTPRLAKPVDRSKVTLPTDAFVDPNDLEYYLLG 418

Query: 447 RVNKIYGPKEASEVEGQN 464
           R   I  P ++ +    +
Sbjct: 419 RSAYIAEPSDSEDNSSAS 436


>gi|115361033|ref|YP_778170.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115286361|gb|ABI91836.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 657

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 119/434 (27%), Positives = 211/434 (48%), Gaps = 18/434 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +     +++ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 92  GAVRDATSVTVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L++ +    +I V   + T+VL G V   Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  +   +G           V+N+L +    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIAHAYSDSAGEGAGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGTAFNIQ 270

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S G    +    +   F     A      ++ LAEP L  I
Sbjct: 271 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 326

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 386

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNASGSLKAIPGV 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D +S   +   +    +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPSEIDVYATGNM 506

Query: 449 NKIYGPKEASEVEG 462
               G ++A+    
Sbjct: 507 EGRKGVRKATMQPS 520


>gi|170750189|ref|YP_001756449.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
 gi|170656711|gb|ACB25766.1| type II and III secretion system protein [Methylobacterium
           radiotolerans JCM 2831]
          Length = 546

 Score =  309 bits (792), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 148/497 (29%), Positives = 244/497 (49%), Gaps = 55/497 (11%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            A V+ +   E    +++ +   + +I+ +P D ++V V++P  A+ VV S R +++ G 
Sbjct: 50  PAPVLTVGAAEANTTRRVELTAGRSVIVDLPRDAKEVFVANPAVANAVVRSTRKVFVIGM 109

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIA--HLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
             G  ++ ++  +G+Q+  LD+ + RD+    L   L + I      V     +V+L G 
Sbjct: 110 ADGATSIFIMDAEGRQIAALDVTVARDLNLGTLRELLSQSIPGGRFDVRSSGASVLLSGA 169

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANS----------SSKKVMNLLNIAGEDQVTLKV 200
           V +  D+Q+A++++  F+   G      +          S   V+N L I  +DQV L+V
Sbjct: 170 VNSSSDAQQAIDIANAFVGLGGGGAAGPAGAASGGVAAGSRGAVINNLTIRNKDQVMLRV 229

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------------- 241
           T+ EV R++LKQ G   +   S+  P  +          +                    
Sbjct: 230 TVVEVSRNVLKQFGINMAGNWSALNPVGNLGQTVVNGGTAAATQVPAYLPNVITNNLPFP 289

Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                  G           FS +  L A E+A   R LAEPTLTAISG++A F +GG+  
Sbjct: 290 INTNTPSGNLIQASVQGGGFSLQATLKAFEQAGVSRILAEPTLTAISGEAAKFLAGGEFA 349

Query: 295 YKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------G 342
               +        +  +T   YGV L FTPTVL+  RI +R+ T+V+E           G
Sbjct: 350 VPASATCAVGGVCSPGITYKPYGVALSFTPTVLADNRISIRVATDVTEIDTQQSFSYVIG 409

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             +  +P  RVR+++TTVELPSGG ++ AGL++   +Q   G+P L  +PILGALFR+  
Sbjct: 410 NTSVAVPGTRVRRSETTVELPSGGVMMTAGLIQQFNKQAIAGLPGLINLPILGALFRSRD 469

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE- 461
           + R+ETE+ I  TP++ +P+  + +SRPDD++    D +     ++N+IYG         
Sbjct: 470 YQRQETELMIMCTPYIARPMEPKQVSRPDDNFVDASDGQTVLLGQINRIYGKVAPPGATA 529

Query: 462 ----GQNYKGAIGFIYK 474
               G+ Y+G +GFI +
Sbjct: 530 AAPLGRAYRGRVGFIVE 546


>gi|257141104|ref|ZP_05589366.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
          Length = 826

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           V +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           ++ G     + +         ++  G+       ++      + A      ++ LAEP L
Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   TS       ++GV L FTPTVLS GRI L++  
Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388

Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q   + +
Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +  
Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508

Query: 446 NRVNKIYGPKEAS 458
             +    G ++  
Sbjct: 509 GNMEGRGGLRQHG 521


>gi|220918104|ref|YP_002493408.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955958|gb|ACL66342.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 477

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 131/491 (26%), Positives = 224/491 (45%), Gaps = 44/491 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIK-EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           M++  L +       LPP++  A A      D  +G G ++++   +  +L +  ++  V
Sbjct: 1   MIAHTLLALALFATPLPPVELAAGALPPLRIDRSVGAGSELALEAGQNRLLIISEEIGRV 60

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V+DP+ AD+ V +   + L  K+ G  ++ L     + +  + +++ R++  L   ++ 
Sbjct: 61  AVADPSVADLKVVTTNQLLLTAKSSGTTDLTLWNRSNEPL-VIALVVTRNLEPLRKQVKD 119

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                 + +    + V+L G V  ++  +R VE+++               +K+V NL+ 
Sbjct: 120 LFPGEKVTITGAGELVILSGEVSDVRIPERLVEVAK-------------LHAKQVANLVK 166

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQH-----------SITGSSSGPSKSFAADFGGKF 238
           ++G  QV L+V  AEV R  L+QIG               +TG    P+       G   
Sbjct: 167 VSGNQQVQLEVRFAEVSRSGLRQIGVNLFHQSSNGEVVTGMTGRGIIPTDLGVPGTGTAG 226

Query: 239 VS---------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                       G    V  +   F F  +L  LE+    +TLAEPTL  +SGQ A F +
Sbjct: 227 APPPIFRPQFNNGFSMFVSSLSGDFPFSAMLSLLEQNGLSKTLAEPTLVTLSGQQARFVA 286

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNA 345
           GG+        S G T V    +G++L FTPTV++   I L ++ EVS+        +  
Sbjct: 287 GGELPIPLG-GSFGQTQVEWKKFGILLDFTPTVIAGDTIHLDLKAEVSDIDQSLAITIGG 345

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P    R+++TT+ L  G +  +AGLL D ++   E +PLL  IPILGALFR++++ R
Sbjct: 346 TTIPGLTSRQSETTIRLGDGQSFAIAGLLSDRVRSQIERVPLLGSIPILGALFRSTQYKR 405

Query: 406 EETEIFIAATPFLVKPVAMRDL-SRPDDH-YSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           EE+E+ +  T  L +PVA   L   P +   +   D + F     +       ++    Q
Sbjct: 406 EESELLVVVTARLARPVAPHQLPPLPTERELNHPGDIELFLLGWDDGGKQVPRSAPSTRQ 465

Query: 464 NY--KGAIGFI 472
                GA GF+
Sbjct: 466 AGGPSGARGFV 476


>gi|261252087|ref|ZP_05944660.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260935478|gb|EEX91467.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 480

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 198/449 (44%), Gaps = 31/449 (6%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           IS      GK +++  +K   + +    + V + DP   D+V+     ++L GK +G  N
Sbjct: 10  ISFAATQSGKIVTVPHHKSTHVTLAGKAKRVSLGDPDVLDIVMLKSDEVFLIGKKLGSTN 69

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++     G+ + +++I +  D+  L+  L  F+ D  I+V      ++L G V +     
Sbjct: 70  LMAWDSRGQLIESINIEVTHDLNSLKAKLFEFLPDEEIKVHSAQHRLILSGQVSSQSVMN 129

Query: 159 RAVELSETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            A+ ++ET+ +    ++         +S  V+NLL I G  QV L+VT+AEV+R ++++ 
Sbjct: 130 IALRVAETYSAGKEADKGKSSLSNQVNSTGVINLLTIGGAQQVMLEVTVAEVQRTLVRKF 189

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG--------------DFSVKGVLDRFSFETV 259
                   +S G         GG                           +     F   
Sbjct: 190 DANFHFFQTSGGEFSWGGTSAGGVIDDVNNVIGPIFNAPGVESTGLLGTFIDSNTLFTFA 249

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L   ++    + LAEP LTA+SG  A F +GG+      S      ++   +YGV L F 
Sbjct: 250 LDIAKQNGTAKVLAEPNLTALSGAKAEFLAGGEFPIPVPSEDG--ITIEYKEYGVGLKFI 307

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----------AGDMPSYRVRKADTTVELPSGGTIV 369
           PTVLS  +I L +  +VSE                   +P    R A +T+EL  G TI 
Sbjct: 308 PTVLSDKKINLNLAVDVSELATSTTLTLNPGATNGTYVIPPITRRSASSTLELADGQTIG 367

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           +AGLL ++++ + E +P  S IP+LG +F +  +   ETE+ I  TP L KP+  R ++ 
Sbjct: 368 IAGLLSENVRDVVEEMPGFSDIPVLGQMFNSQEYISGETELVILVTPRLAKPIDRRRITL 427

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           P + +   +D + +   R   I    E  
Sbjct: 428 PTESFVEPNDFEYYLLGRGAYIAPASEQK 456


>gi|254229332|ref|ZP_04922749.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262393417|ref|YP_003285271.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
 gi|151938140|gb|EDN56981.1| putative phospholipid-binding domain family [Vibrio sp. Ex25]
 gi|262337011|gb|ACY50806.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio sp. Ex25]
          Length = 487

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 207/437 (47%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++   +  GK +++  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAATVQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF      ++  +SS      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDDSMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
                    S   +       GG                 F    +     F   L   +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450


>gi|269966892|ref|ZP_06180965.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
 gi|269828559|gb|EEZ82820.1| Flp pilus assembly protein [Vibrio alginolyticus 40B]
          Length = 487

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 121/437 (27%), Positives = 205/437 (46%), Gaps = 24/437 (5%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           ++++      GK +++  ++   L +    + V + DP   D++V     ++L GK +G 
Sbjct: 16  LSVNAATAQSGKVVTVAHHQSTQLMISGQAKKVTLGDPEVLDILVLRSNELFLIGKKLGT 75

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            NV +    G+ +   ++ +  D+  L+  L +F+ D NI V    + VVL G+V + Q+
Sbjct: 76  TNVSVWDRRGRLIEQFNVEVTHDLNTLKSKLYQFLPDENIEVHSAQEKVVLRGLVSSQQN 135

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
              AV+++ETF      ++  +SS      V+NLL+I G  QVTL+VT+AEV+R ++++ 
Sbjct: 136 MDTAVKIAETFALGEAADEEDDSSKDDESMVINLLSIGGAQQVTLEVTVAEVQRTLVRRF 195

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGG---------DFSVKGVLDRFSFETVLHALE 264
                    S   +       GG                 F    +     F   L   +
Sbjct: 196 DSNFHFFQRSGDFTWGGTTAGGGIDGIGPILNVPTVEDFGFLGSFIDSNTLFTFALDVAK 255

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +    + LAEP+LTA+SG  A F +GG+      +      ++   +YGV L F P +LS
Sbjct: 256 QNGVAKVLAEPSLTALSGTQAEFVAGGEFPIPVPNEDG--ITIDYKEYGVQLDFVPFILS 313

Query: 325 PGRIGLRIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             RI L++   VSE                   +P    R A TT+EL  G TI +AGLL
Sbjct: 314 DKRINLKLNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLL 373

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            ++ + +  GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +
Sbjct: 374 SENARNVANGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGF 433

Query: 435 SVEDDAKAFFFNRVNKI 451
              +D + +   +  ++
Sbjct: 434 VAPNDVEFYLLGKGAEL 450


>gi|83859357|ref|ZP_00952878.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
 gi|83852804|gb|EAP90657.1| pilus assembly protein CpaC [Oceanicaulis alexandrii HTCC2633]
          Length = 529

 Score =  308 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 150/540 (27%), Positives = 258/540 (47%), Gaps = 77/540 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGK---GKKISIGLNKV 57
           M    +T   +  +      P+ A+L   +      + +   E G     + + + L + 
Sbjct: 1   MARFSQTLCAVALMAAACVCPAEAQLSGGRTEANNTLQVHIREPGAGPASESLQLPLGQA 60

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            ++ +P D  DV++++   A  VV + R  ++ G+ VG+ N+     DG  +L+L++ +E
Sbjct: 61  AVIHLPEDAADVVIANDEVASAVVRTTRRAFVMGQAVGRTNIFFFNADGGLILDLNVRVE 120

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           RDIA L+  L RF+ +  I+ E ++  +VL G V +   +  A+++++ ++         
Sbjct: 121 RDIAALQDALDRFVPEGRIQAESMNANIVLSGQVPSAAAADTALQVAQRWV--------- 171

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------ 219
             + ++V++ L + G DQVTL+V I E+ R +++Q+G   S                   
Sbjct: 172 -DTPEQVVSFLTVEGRDQVTLQVRIVEMERTLVRQLGVNLSGEQAFGEFTPTVRTAATND 230

Query: 220 -----------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--RF 254
                                    +  G S +F           G   +   V    + 
Sbjct: 231 RGDPLFDQNGAPIYEVYQQGRFQNSAGWGTSNAFGVAGAALGGLTGTLGTQNLVDGVLQS 290

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           S    L+ALER   +RTLAEP +TAISG+ A F +GG+          G  ++    +GV
Sbjct: 291 SISATLNALERVGLVRTLAEPNITAISGEPAQFLAGGEFPVPVGRDRDGNVTIEFKPFGV 350

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE--------------------PVIGVNAGDMPSYRVR 354
            L FTP VLS GRI LR+ TEVSE                        V    +P+  V 
Sbjct: 351 GLGFTPVVLSEGRISLRVSTEVSELSNEGAISLNSQVITDDQGNVTGTVQGVTIPALSVN 410

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A+TTVELPSGG++V+AGL++++ +Q  + +P + ++P+LG+LFR+  F   ETE+ +  
Sbjct: 411 RAETTVELPSGGSMVIAGLIREETRQAMDSVPGIERMPVLGSLFRSRDFANNETELVVVV 470

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           TP+LV P+   D+  P + ++V   A   F  R+N++Y    A +VE + + G IGF+ +
Sbjct: 471 TPYLVDPLNPNDVESPAEGFAVSSLAAGAFLGRLNRVYAAPGA-QVENRGWSGPIGFVLE 529


>gi|13475417|ref|NP_106981.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
 gi|14026169|dbj|BAB52767.1| pilus assembly protein [Mesorhizobium loti MAFF303099]
          Length = 481

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 119/483 (24%), Positives = 207/483 (42%), Gaps = 35/483 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           F+  M+    S   ++     + +A    I++S+  +    ++ + +++ + + V   + 
Sbjct: 4   FWVRMAAVALSCFATLPTWSLVADAADRFIDVSNPSV---HRVFLPMSQSVTIAVNATLG 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D++V D   AD    + RT+Y+ GK  G   V L   + + +  + I +  D++ +   +
Sbjct: 61  DIVVGDEKIADAQPMTDRTLYVIGKGAGTTTVNLFSPEKRSLGVIQIEVGVDVSDMAQAI 120

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           R+    S I V  V+  V L G V+        +E+++ +                ++N 
Sbjct: 121 RQVAPRSRIEVASVNGRVRLGGHVKDGVTMAAILEVAKQY------------GPDDIINS 168

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------SKSFA 231
           + I    QV L+V I E +R+  + +G       S S                       
Sbjct: 169 VTIDDSQQVNLEVRILEAKRNAGRDLGVSIRSNNSRSTTIVGTGIAAVDKDNVVLGTGGF 228

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                   +  G    + + +    +  + ALE   A+RTLA P LT +SG+ ASF +GG
Sbjct: 229 LSDLLSTSTPFGALLTRVIDNNIKVDLYIEALEAKGAVRTLANPNLTTLSGEQASFNAGG 288

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +          G  S+    +GV L FTP VL  G+I + +  EVS+      AGD P +
Sbjct: 289 EVP-IRTLDKNGEISIVYKQFGVNLLFTPVVLDDGKIHMNLAPEVSDLNGFTTAGD-PIF 346

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  T VEL  G +  + GLL     +L+  +P L ++P++G LFRNS   +EETE+ 
Sbjct: 347 TNRKLSTVVELRDGQSFAVGGLLSSRTTKLQNQVPWLGQVPVIGTLFRNSSNQKEETELV 406

Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           +  TP +V+PV     L+ P D     +D + F   ++  +          G    G  G
Sbjct: 407 VIVTPHIVRPVKPGEQLATPFDKTRPANDPEFFVLGQLE-VNKDMIRRYETGDGVTGPYG 465

Query: 471 FIY 473
            + 
Sbjct: 466 HML 468


>gi|172062959|ref|YP_001810610.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171995476|gb|ACB66394.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 460

 Score =  307 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +   ++A+     +A A               +SI   K  +L
Sbjct: 1   MVRMVRWIAVWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+  L        + V     ++++ G V +  D+   ++    +L+           
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239
            ++++N L ++   QV L+V + EV R++ +Q+G   S  G++                 
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216

Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                 S  G +SV G     R+S + VL AL++   I  LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TKLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276

Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           +         ++TGA +V    +GV L FTPTVL+  RI L+++ EVSE      +    
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ +TTVEL SG +  + GLL+         IP L ++PI+G LF +  F  
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +TE+ +  TP++V+P     L +  D  +       F   R   +      +       
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452

Query: 466 KGAIGFIY 473
            GA GF+Y
Sbjct: 453 VGAAGFVY 460


>gi|167648152|ref|YP_001685815.1| type II and III secretion system protein [Caulobacter sp. K31]
 gi|167350582|gb|ABZ73317.1| type II and III secretion system protein [Caulobacter sp. K31]
          Length = 545

 Score =  307 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 150/517 (29%), Positives = 246/517 (47%), Gaps = 74/517 (14%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +   P +      V+ I     G  + +++   K  I+++PVDV+D+LV++P  AD 
Sbjct: 41  APRIIDTPTLAPPADQVLRIDLTASG-AQSLTLARGKSAIVELPVDVRDMLVTNPAVADA 99

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V+  PR +Y+ G   G  + +     G+++L+L I +++D + L+ TLRR +  +NI V+
Sbjct: 100 VLRGPRRIYVLGMGQGVTDAVFFDAAGRKILSLAIRVDQDSSALQDTLRRVLPAANIEVQ 159

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            + D+V+L GMV  + +S  A +++  F+ +             V+N+L IAG+DQV LK
Sbjct: 160 SIRDSVILTGMVANVGESTMASQIAARFVDK----------PDNVLNMLTIAGKDQVMLK 209

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------------ 235
           V I EV+R+I+KQ+G   S      G ++                               
Sbjct: 210 VRIVEVQRNIIKQLGVDSSAVLGQLGETQYAFGLSPSYGINGKLLGGLTGGYKADTTKQP 269

Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
                                     S G   ++              ++ A ER   +R
Sbjct: 270 TLQVPCNAALPDGAKCLQIVRDNSVYSNGDTATITDTAGSAGLNSAKGMIQAFERVGLVR 329

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LT +SG++  F  GG+        +TG  ++    YGV L +TP VLS GRI L
Sbjct: 330 TLAEPNLTVVSGEAGKFLVGGEFPVPVGQDATGKVTIEFKPYGVGLGYTPIVLSGGRISL 389

Query: 331 RIQTEVSEPVI-------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           ++ TEVSE                  +   +P   VR+A+TTVELPSGG++++AGLL+  
Sbjct: 390 KLSTEVSELSSLGAFTLTTSTGTSTSSNLTVPGLTVRRAETTVELPSGGSLMIAGLLQQQ 449

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +Q  + +P ++ +PILGALFR+  +   ETE+ +  TP++V P   ++L  P D     
Sbjct: 450 TRQNIDALPGMTSLPILGALFRSRDYLNGETELVVIITPYIVDPTKPQNLQTPADGLQTA 509

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            D       R+NK+          G+ Y+G +G++ +
Sbjct: 510 SDMSTALLGRLNKVVKAP-VGANSGRAYQGPVGYVIE 545


>gi|170703887|ref|ZP_02894570.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170131202|gb|EDS99846.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 460

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 132/488 (27%), Positives = 223/488 (45%), Gaps = 43/488 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  + R         + +   ++A+     +A A               +SI   K  +L
Sbjct: 1   MVRMVRWIAFWCLACIVAPGVALAQRAHAADAGAP--------------LSIATGKGEML 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      + V+DP+ AD+ V SPRT+++FGK  G   +I +G + + +L   ++++ D 
Sbjct: 47  SLSEPATAMFVADPSIADIQVPSPRTVFVFGKKAGTTTLIALGANHRPILRRTVIVQVDT 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           A L+  L        + V     ++++ G V +  D+   ++    +L+           
Sbjct: 107 ASLQTVLDSRFPQLKLAVSGAPGSLMVSGKVPSAADADAVMQSLTPYLNDK--------- 157

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV- 239
            ++++N L ++   QV L+V + EV R++ +Q+G   S  G++                 
Sbjct: 158 -ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQQLGINWSSLGAAGNFIGGLFNGRTLMDPT 216

Query: 240 ------SEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                 S  G +SV G     R+S + VL AL++   I  LAEP LTA+SGQ+ASF +GG
Sbjct: 217 TRLFNLSPTGAYSVLGGFHAGRWSIDVVLDALDQEGLITMLAEPNLTAMSGQTASFLAGG 276

Query: 292 QHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNA 345
           +         ++TGA +V    +GV L FTPTVL+  RI L+++ EVSE      +    
Sbjct: 277 EIPIPVAQAGNTTGAITVEFKPFGVSLDFTPTVLADNRISLKVRPEVSEVDANNSVTTGG 336

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P   VR+ +TTVEL SG +  + GLL+         IP L ++PI+G LF +  F  
Sbjct: 337 VTVPGLTVRRVETTVELSSGQSFAIGGLLQSQTANTVSQIPGLGRLPIIGRLFSSKNFQD 396

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
            +TE+ +  TP++V+P     L +  D  +       F   R   +      +       
Sbjct: 397 NKTEVVVIVTPYIVQPTGPGQLEQALDTVARPSSDLEFAVQRNLGLDLMSGETPRP---- 452

Query: 466 KGAIGFIY 473
            GA GF+Y
Sbjct: 453 VGAAGFVY 460


>gi|115358171|ref|YP_775309.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115283459|gb|ABI88975.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 460

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 123/457 (26%), Positives = 209/457 (45%), Gaps = 29/457 (6%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A    +      +  G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++FG
Sbjct: 18  APGVALAQRAHAVEAGATLSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K  G   +I +G + + +L   ++++ D   L+  L        + V     ++++ G V
Sbjct: 78  KKAGTTTLIALGANHRPILRKTVIVQVDTVSLQAVLDSRFPQLKLSVSGAPGSLMVSGKV 137

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +  D+   ++    +L+            ++++N L ++   QV L+V + EV R++ +
Sbjct: 138 PSAADADAVMQSLAPYLNDK----------ERIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187

Query: 212 QIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
           Q+G   S  G++                         +            R+S + VL A
Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTNRLFNLSPTGAYSVLGGFHTGRWSIDVVLDA 247

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320
           L++   I  LAEP LTA+SGQ+ASF +GG+         ++TGA +V    +GV L FTP
Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGNTTGAITVEFKPFGVSLDFTP 307

Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVL+  RI L+++ EVSE      +      +P   VR+ +TTVEL SG +  + GLL+ 
Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                   IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  + 
Sbjct: 368 QTANTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 F   R   +      +        GA GF+Y
Sbjct: 428 PSSDLEFAVQRNLGLDLMSGETPRP----VGAAGFVY 460


>gi|150377247|ref|YP_001313842.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
 gi|150031794|gb|ABR63909.1| type II and III secretion system protein [Sinorhizobium medicae
           WSM419]
          Length = 466

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 119/456 (26%), Positives = 214/456 (46%), Gaps = 18/456 (3%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
              F    +V     +  + +A  +  ++     + I +   K + ++      ++++ D
Sbjct: 9   FAFFCLVLAVFMGIGVGSSASANGDSVEISSNFSRSIRVAKGKTVTIRAVQRFDEIVIGD 68

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D   L  T+R+ +  
Sbjct: 69  PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           SN++V   +  +VL G       + +A +++  F              ++++N + I   
Sbjct: 129 SNVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEIINSVKITSS 177

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L V   E+ RD+ K++G + S   + S  S  F +       +  G      + + 
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTRISAAYAWSNGSVEFNSRPRATSNTPAGSLIGSLIGEG 237

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           +S +  + ALE     R LAEP L A SG+++SF +GG+     VS   G  +V+   +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIP-VSEDDGQIAVSYKKFG 296

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIV 369
           V L FTPTVLS G I L I+ EVS      +       +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVRNISIPGFSVRRARTSVDLKSGQSFM 356

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
           +AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP LVKP+   + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPMDPLKKVA 416

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            P D      +A+ F    ++++           Q 
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVNADDRTRTASTQA 451


>gi|113866744|ref|YP_725233.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
 gi|113525520|emb|CAJ91865.1| flp pilus assembly protein secretin [Ralstonia eutropha H16]
          Length = 618

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 207/441 (46%), Gaps = 21/441 (4%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           +  A        I     + + + K  ++ +   V++  + +P      + SP+T+Y+ G
Sbjct: 76  SGEARGPNCTGAIRSESSVMVPVGKSQLITLQEPVRNRTLGNPNVVQATMVSPQTLYVLG 135

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGM 150
           + VG  N+I+ G  G     +++++  D   L+ +L + +     IRV   +D +VL G 
Sbjct: 136 RAVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLGQLLPGEPGIRVMTAADNLVLTGS 194

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V   Q +Q+A+E+++ + + +            V+N+L++    QV L+V +AEV + +L
Sbjct: 195 VTNAQTAQQAMEIAQAYANAAQGGDGNKK--GGVLNMLSVDTPQQVMLEVKVAEVSKTLL 252

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            Q+G   ++     G   S++       ++           +   F+  + A +  + ++
Sbjct: 253 NQLGSTVNL----QGGFGSWSGGLVTSLLTGASSAIFASKANNRPFDIAIDAQKNDSLVK 308

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            LAEP L  ISGQ ASF +GG+         V +  G  ++   ++GV L FTPTVL+ G
Sbjct: 309 ILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANG 368

Query: 327 RIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           RI L++  EVSE                  +P    R+A TTV++  G +  + GLL D 
Sbjct: 369 RIHLKVSPEVSELSPTGATIRGGTLAGQSILPVITTRRASTTVQMRDGESFAIGGLLTDS 428

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +   + +P   ++P+LG LFR++++ ++ TE+    TP LVKP+   +   P D +S  
Sbjct: 429 ARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFVITPRLVKPMQTSNYPLPTDSFSTP 488

Query: 438 DDAKAFFFNRVNKIYGPKEAS 458
           +    +F   +      +   
Sbjct: 489 NPLSLYFMGNMEGSGKRQPQP 509


>gi|302343419|ref|YP_003807948.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
 gi|301640032|gb|ADK85354.1| type II and III secretion system protein [Desulfarculus baarsii DSM
           2075]
          Length = 466

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 113/485 (23%), Positives = 192/485 (39%), Gaps = 43/485 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M      +    +        A+A           +  ++ +      ++ +P  ++ V 
Sbjct: 1   MSGFCRLAVAALIVAFAVATPASAR-------AEARTGRLEVAAGHSRLVDLPAPLKRVS 53

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V+D T ADV+V +PR +Y+ G+  G  N+ +     + +    + + RD   L+    R 
Sbjct: 54  VADETVADVLVINPRQIYVNGRKPGNTNITVWDRAERVIAAYAVGVGRDYTRLKAAFARV 113

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +    I V  +   +VL G V +    ++A  ++  F              ++V NLL +
Sbjct: 114 LPGEAIEVHELEGALVLAGSVSSESAREKAESIARLF------------EKERVSNLLEV 161

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS--GPSKSFAADFGGKF---------- 238
             + QV LK+  AEV R   K++         +       +F  +  G            
Sbjct: 162 VDQKQVLLKLRFAEVNRQAAKRMNVNLGYWDPARPGNIFFTFLDNMTGPPSIDYSKGSIE 221

Query: 239 --VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +S               +   L  L++    + LAEP L  +SG+ A+F +GG+    
Sbjct: 222 FDLSANVGAWGGLNDSGRQYMAFLDILKQNGLAKILAEPNLVCVSGKKANFLAGGEFPIP 281

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
                   T++    YGV L F P VL  G+I L ++ EVSE         +   +P   
Sbjct: 282 VP--GRDYTAIVFKKYGVQLTFLPKVLPNGKISLEVEPEVSELDYSPGVVTDGFVVPGLT 339

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T +EL  G    +AGLLK D+ +     P L  +PILGALFR+S++   ETE+ I
Sbjct: 340 TRRASTQLELGDGQGFAIAGLLKQDVTRSVSKWPFLGDLPILGALFRSSQYRNRETELLI 399

Query: 413 AATPFLVKPVAMRDLSRPDDH-YSVEDDAKAFFFNRV---NKIYGPKEASEVEGQNYKGA 468
             TP +V+P             +   DD   + + +    ++  G   A        +G 
Sbjct: 400 VVTPHIVRPGDKTPDPLIGPRDFDDPDDMDFYLWGKTGGDDEPPGRAGAKAERSMEMEGR 459

Query: 469 IGFIY 473
            G   
Sbjct: 460 FGHEV 464


>gi|84386797|ref|ZP_00989822.1| type II and III secretion system protein [Vibrio splendidus 12B01]
 gi|84378325|gb|EAP95183.1| type II and III secretion system protein [Vibrio splendidus 12B01]
          Length = 465

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 109/460 (23%), Positives = 196/460 (42%), Gaps = 45/460 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                   + +N+  ++++P   + + +S+   A+    +   + +FGK  G A + ++ 
Sbjct: 21  ASTASTFDVTINEARMIRLPEKAKSIFISNTHIANYQTLTNTKVMIFGKQAGSATITVLN 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + +    I +  +       ++    ++++  E +   + L G V +   +   V L
Sbjct: 81  EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140

Query: 164 SETFLSQSGRNQYANS-----------------------SSKKVMNLLNIAGEDQVTLKV 200
           ++ +LS    +                            +  +++N L +   +QV ++V
Sbjct: 141 AKGYLSPIVGSTEQQESSNSQGNSNNSSSSTNQNQQTQLNDDELINQLVVTMPNQVNIRV 200

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            IAEV R++  ++G +        G                           + S   ++
Sbjct: 201 KIAEVSRNVSNKLGIKWGSIAGGVGQFSF-------------SKLPNVSSWGKPSITALI 247

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL     +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTP
Sbjct: 248 DALATNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTP 305

Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVLS  RI L++  EVS   I     +N  + PS+  R A TT+EL SG +  L GLLK 
Sbjct: 306 TVLSQNRISLKVNPEVSNISIESQQVINGTNFPSFTTRSASTTIELASGQSFALGGLLKS 365

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           +  +  + +PL+ +IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D    
Sbjct: 366 EDIEQLQKVPLIGEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMPLPTDGLIP 425

Query: 437 EDDAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             D +        +          ++ +     G  GF Y
Sbjct: 426 LSDVERLLAWPREQQKTSNNKATYTDNQKPRLLGDNGFYY 465


>gi|110632971|ref|YP_673179.1| type II and III secretion system protein [Mesorhizobium sp. BNC1]
 gi|110283955|gb|ABG62014.1| type II and III secretion system protein [Chelativorans sp. BNC1]
          Length = 464

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 218/470 (46%), Gaps = 25/470 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           + L R  F + ++  F               ++A  +   V + K   I +   K + ++
Sbjct: 10  KRLTRYVFAVCALAFFG-------CAFGTMDSSANGDSIQVSVAKDSAIRVARGKPLTVE 62

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +     ++++ DP  A +   +  + Y+ G+ +G   + L     + +   D+ +  D  
Sbjct: 63  IAEAFDEIVIGDPEIATINPLTDHSFYVLGQGLGTTGIALYDESKRLIGTFDVEVTLDTK 122

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L  T+R+ +  SNI+V   +  +VL G       +++A +++  F              
Sbjct: 123 MLAGTIRQSVPGSNIKVTSANGRIVLSGSAPDAVAAEKASQIAARFAGD----------- 171

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+N ++I    QV L V   E+ R + K++G + S    +SG   SF +D      + 
Sbjct: 172 EDVINTIDITSSQQVQLNVRFVEINRAVGKELGTKISAAYVTSGGGISFNSDPRASSNTP 231

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            GD     V D FS +  + ALE     R LAEP L A SG++ASF +GG+     VS  
Sbjct: 232 AGDLIGGLVSDGFSIDVAIEALEDRGVARRLAEPNLIARSGETASFLAGGEFPIP-VSEE 290

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKAD 357
            GA +V+   +GV L+FTPTVLS G I L I+ EVS         V    +P + VR+A 
Sbjct: 291 NGAVTVSYKKFGVGLNFTPTVLSDGLIALDIEPEVSSIDTTSSYRVGNIAIPGFTVRRAR 350

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+++L SG + ++AGLL+   +   + +P L ++P+LGALF +  + R ET++ I  TP 
Sbjct: 351 TSIDLRSGQSFMMAGLLQSQNEINTQRVPGLGQLPVLGALFSSKAYQRRETDLVIIVTPH 410

Query: 418 LVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           LV P+     ++ P D      D + F    V ++   +  +        
Sbjct: 411 LVSPIPPGNKVATPADRTKPARDGEVFL-GNVEEVRLQQRTAANAPSAGH 459


>gi|307300715|ref|ZP_07580490.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
 gi|306904249|gb|EFN34834.1| type II and III secretion system protein [Sinorhizobium meliloti
           BL225C]
          Length = 466

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/461 (25%), Positives = 211/461 (45%), Gaps = 18/461 (3%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
              F    ++     +    +A  +  ++     + I +   K + ++      ++++ D
Sbjct: 9   FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D   L  T+R+ +  
Sbjct: 69  PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           S+++V   +  +VL G       + +A +++  F              ++V+N + I   
Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L V   E+ RD+ K++G Q S   + S  S  F +       +  G      + + 
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           +S +  + ALE     R LAEP L A SG+++SF +GG+          G  +V+   +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L FTPTVLS G I L I+ EVS         V    +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
           +AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP LVKP+   + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
            P D      +A+ F    ++++           Q      
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQARVARA 456


>gi|193782542|ref|NP_435332.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|307319126|ref|ZP_07598556.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
 gi|193072997|gb|AAK64744.2| PilQ2 pilus assembly protein [Sinorhizobium meliloti 1021]
 gi|306895233|gb|EFN25989.1| type II and III secretion system protein [Sinorhizobium meliloti
           AK83]
          Length = 466

 Score =  305 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 118/456 (25%), Positives = 211/456 (46%), Gaps = 18/456 (3%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
              F    ++     +    +A  +  ++     + I +   K + ++      ++++ D
Sbjct: 9   FAFFCFVVALCTGIGVSPPASANGDSVEISSNFSRSIKVAKGKTVTIRAVQRFDEIVIGD 68

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A V   + R+ Y+ G  +G  +V +   +   +  +DI +  D   L  T+R+ +  
Sbjct: 69  PEIATVTPLTDRSFYILGNELGSTSVTIFDAEKNPVGIIDIEVTLDTKLLSSTIRQSVPG 128

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           S+++V   +  +VL G       + +A +++  F              ++V+N + I   
Sbjct: 129 SSVKVTSANGRIVLSGSATDAVAATQAEQIASRFAGD-----------EEVINSIKITSS 177

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L V   E+ RD+ K++G Q S   + S  S  F +       +  G      + + 
Sbjct: 178 QQVQLNVRFVEINRDVGKELGTQISAAYAWSNGSVEFNSSPRATSNTPAGSLIGSLIGEG 237

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
           +S +  + ALE     R LAEP L A SG+++SF +GG+          G  +V+   +G
Sbjct: 238 YSVDVAIDALEDRGMARRLAEPNLIARSGETSSFLAGGEFPIPISEQ-DGTITVSYKKFG 296

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L FTPTVLS G I L I+ EVS         V    +P + VR+A T+V+L SG + +
Sbjct: 297 VGLDFTPTVLSDGLIALDIEPEVSAIDNTASYRVGNIAIPGFSVRRARTSVDLKSGQSFM 356

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLS 428
           +AGLL+ +   + + +P L ++PILGALF +  + R ET++ I  TP LVKP+   + ++
Sbjct: 357 IAGLLQSENNLITQRVPGLGQLPILGALFSSKAYQRRETDLVIIVTPHLVKPIDPLKKVA 416

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            P D      +A+ F    ++++           Q 
Sbjct: 417 SPSDRTKRPTEAEFFL-GNIDEVEVNGRGRSASRQA 451


>gi|172065273|ref|YP_001815985.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171997515|gb|ACB68432.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 656

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 213/434 (49%), Gaps = 19/434 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 92  GAVRDATSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L++ +    +I V   + T+VL G V   Q +Q+A
Sbjct: 152 QGRSGACR-VIDVAVGADAGGLQSSLQQLMPGERDIHVSTAAGTIVLAGTVSNSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  + S S  +         V+N+L +    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIAHAY-SDSAGDGGGAGKGAGVLNMLAVTSPQQVMLEVKVAEVSKTLINQMGSAFNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S G    +    +   F     A      ++ LAEP L  I
Sbjct: 270 GGFGSWSGALVSNLLAGVASAG----IFNKANNKPFSVAADAQNTDNLVKILAEPNLVTI 325

Query: 281 SGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 326 SGQEATFLAGGKIFIPIPQSSGNGTSSITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 386 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 445

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D +S  ++   +    +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFLITPHLVRPLQTADVPLPTDSFSKPNEVDVYATGNM 505

Query: 449 NKIYGPKEASEVEG 462
               G ++A+    
Sbjct: 506 EGRKGVRKATMQPS 519


>gi|16520026|ref|NP_444146.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
 gi|2495099|sp|P55702|Y4XJ_RHISN RecName: Full=Uncharacterized protein y4xJ
 gi|2182718|gb|AAB91933.1| outermembrane protein RhcC2; component of type III secretion
           apparatus [Sinorhizobium fredii NGR234]
          Length = 423

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 136/446 (30%), Positives = 205/446 (45%), Gaps = 30/446 (6%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +   +   I     +S  L K   + +P     + V+DPT AD    S RT+++FGK  G
Sbjct: 1   MPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPTIADYQAPSNRTIFVFGKKFG 58

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           + ++  +  +G+ +  L +++ + IA L   LR  + D  I V       +L G     +
Sbjct: 59  RTSLFALDENGEALAELHVVVTQPIADLRAMLRDQVGDYPIHVSYTPRGAILSGTAPNAE 118

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
               A  ++E FL               ++N + +AG  QV L V +AEV R  LK +G 
Sbjct: 119 VVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVAEVSRSGLKALGI 168

Query: 216 QHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
             S  G                G     GG   +    D  S   VL AL +      LA
Sbjct: 169 NLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLDALAKEHIASVLA 228

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP LTA+SG++ASF +GG+     V    G TSV    +GV L F PTVL    I + ++
Sbjct: 229 EPNLTAMSGETASFLAGGEFPIP-VLQENGQTSVEFRRFGVSLEFVPTVLDNNLINIHVK 287

Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVSE      + VN   +P+   R+ADT VEL SG + V+ GL++ ++       P L 
Sbjct: 288 PEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRNVNNDISAFPWLG 347

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRV 448
           +IPILGALFR+S F +EE+E+ I  TP++V+P      +S P D  +            +
Sbjct: 348 RIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAPA----------L 397

Query: 449 NKIYGPKEASEVEGQNYKGAIGFIYK 474
                 + A   +  + KG +GFI +
Sbjct: 398 GTPPRARAAISTDAPSVKGDLGFIIE 423


>gi|187927687|ref|YP_001898174.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|187724577|gb|ACD25742.1| type II and III secretion system protein [Ralstonia pickettii 12J]
          Length = 663

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 118/478 (24%), Positives = 216/478 (45%), Gaps = 35/478 (7%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            R   +       S NP++A  P                +     + + + K  ++ +P 
Sbjct: 65  SRAGASAPVQMTISMNPALATAPVA----DVRGPNCTGAVRGESSVVVPVGKSSLISLPE 120

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
            V++  + +P      + SP++MYL G++VG  N+I+ G  G   +   ++   D   L+
Sbjct: 121 PVRNRTLGNPAVVQATMVSPQSMYLLGRSVGTTNMIVQGRSGACSIVNVVVNA-DAGGLQ 179

Query: 125 MTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------ 171
            +L + +   N IRV   +D++VL G V + Q +Q+A+E++  + + +            
Sbjct: 180 TSLAQLMPGENKIRVMTAADSLVLAGNVSSAQAAQQAMEIAHAYAASAQSGADKGGGAAG 239

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +    V+N++ +    QV L+V +AEV + +L Q+G   ++     G   S++
Sbjct: 240 ALGGGGAAGGANVINMMIVDTPQQVMLEVKVAEVSKTLLNQLGSALNV----QGGFGSWS 295

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  ++           +   F+  L A +  + ++ LAEP L  +SGQ ASF +GG
Sbjct: 296 GGLLTSLLTGSSTGFFANKANNRPFQVELDAQKNDSLVKILAEPNLVTLSGQEASFLAGG 355

Query: 292 QHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           +       SS+       ++   +YGV L FTPTV++ GRI L++  EVSE         
Sbjct: 356 KIYIPVAQSSSSGGAPTITLQEEEYGVGLKFTPTVMANGRINLKVAPEVSELSPTGATVT 415

Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                    +P    R+A TTV++  G +  + GLL+D+ +   + +P   +IP+LG LF
Sbjct: 416 GANTNGQTILPLITTRRASTTVQMRDGESFAIGGLLQDNARGSLKALPGAGEIPVLGTLF 475

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           R+++F  + TE+ I  TP LV+P+       P D +S  ++   +    +        
Sbjct: 476 RSTQFQHDLTELVIVITPRLVQPMQTASYPLPTDSFSTPNELAVYLTGNMEGSGAKNR 533


>gi|149912019|ref|ZP_01900613.1| putative membrane protein [Moritella sp. PE36]
 gi|149804918|gb|EDM64952.1| putative membrane protein [Moritella sp. PE36]
          Length = 473

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 120/459 (26%), Positives = 200/459 (43%), Gaps = 42/459 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + + LNK  ++++P   + + ++  + AD    +   + +FGK  G  ++ ++    
Sbjct: 25  AQTLDVVLNKARLIELPKTAKSIFIASSSIADYQTLTNTKIMVFGKKTGSTSLYVLDAKE 84

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +  + +  ++  L   + +   D+    E  +  + L G V T   +++ V LSE 
Sbjct: 85  NVIYSATVKVSHNVTELNELIHKEFPDAIFNAESTAGKLFLKGQVPTPSMAEKIVRLSEG 144

Query: 167 FLS--------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           ++S                    Q  +   +N  + +++N L +   +QV L++ IAEV 
Sbjct: 145 YVSTLASTESSDSQQSGNAQSSTQPTQPAASNVDNDELINQLQVTMPNQVNLRIRIAEVS 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R +  ++G +    G        F         + GG               ++ AL   
Sbjct: 205 RKVSNKLGIKWGSQG--------FGTGTFAFLDNYGGKLGGVNPASWADLSVIVDALATN 256

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +  LAEP LTA+SG+ ASF  GG+     V S T    V    +GV L F PTVLS  
Sbjct: 257 GMMSVLAEPNLTAMSGEEASFLVGGEIPIPLVYSDTAT--VEYKTFGVRLDFKPTVLSAN 314

Query: 327 RIGLRIQTEVSEPVIGVN--------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           RI L++ TEVS      N        +   P++  R+A TT+EL SG +  L GLL+   
Sbjct: 315 RISLKVATEVSTVSSETNVQIGGTQGSSSFPTFVTRRASTTIELASGQSFALGGLLQSKD 374

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            +  + +PLL  IP+LGALFR++ F REETE+ I AT +LV+P     L  P D      
Sbjct: 375 IEQLQKMPLLGDIPVLGALFRSNEFQREETELIIIATAYLVQPTRADILPLPTDGLIPMS 434

Query: 439 DAKAFF----FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           D +         +       +  ++       G  GF Y
Sbjct: 435 DVERLLAWPVSKQATNATDNESRTDNRQPRLLGDNGFYY 473


>gi|197106459|ref|YP_002131836.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
 gi|196479879|gb|ACG79407.1| pilus assembly protein CpaC [Phenylobacterium zucineum HLK1]
          Length = 484

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 110/430 (25%), Positives = 202/430 (46%), Gaps = 20/430 (4%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
           F++  +   +     A  + +  + V  G   ++++   K  ++++      V ++DP  
Sbjct: 4   FAAIAAALSVGAGTLAPQSALAAAAVVAGPSSELAVEAGKGRLIRLDRPAATVFIADPKI 63

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           ADV V SP  +Y+ GK  G  ++  +    + + +L + +  D A L+  L+R   +S I
Sbjct: 64  ADVQVKSPTLVYVLGKAPGATSLFALDAGERMIADLAVNVGIDTARLDQALKRHAPNSQI 123

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +VE V   ++L G   +  +    + ++  F+          + + +++N + +   +Q+
Sbjct: 124 QVESVDGALILSGKAGSAAEGADILRIAAEFVP-----GEGEARAGRLINRIVVEQPNQI 178

Query: 197 TLKVTIAEVRRDILKQIGFQHSITG----------SSSGPSKSFAADFGGKFVSEGGDFS 246
            L V +AEV +   + +G      G          +      + A+      ++      
Sbjct: 179 NLHVRVAEVSKQAREVLGVNWDAMGLLGEGMVGLATGRQIFTNPASRETFSRLNGTDTIV 238

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                       ++ AL++   ++ LAEP LTA+SG+ ASF +GG++            +
Sbjct: 239 GSYQDGDLDLNVLVDALKQKGLVKVLAEPNLTAVSGEPASFLAGGEYPIPVPQRGEDLIT 298

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVEL 362
           +    +GV L F  TVL  GRI L ++ EVS+      I V    +P+   R+A+TTVEL
Sbjct: 299 IDYKQFGVSLSFVATVLDGGRISLNVRPEVSQLSEAGAITVQGLTVPALTTRRAETTVEL 358

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG +  +AGLL++   +    +P L  IP+LG LFR+  F + E+E+ I  TP+LVKP 
Sbjct: 359 GSGQSFAIAGLLQNTSNETLRKLPGLGDIPVLGNLFRSKEFQKNESELVIIVTPYLVKPA 418

Query: 423 AMRDLSRPDD 432
           +   L+ P D
Sbjct: 419 SRT-LATPAD 427


>gi|77919345|ref|YP_357160.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
 gi|77545428|gb|ABA88990.1| Flp pilus assembly protein CpaC [Pelobacter carbinolicus DSM 2380]
          Length = 507

 Score =  304 bits (778), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 119/501 (23%), Positives = 204/501 (40%), Gaps = 49/501 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M   +     +  + LF                         +  +   + + +    ++
Sbjct: 1   MTTRRAILPAICFLGLFCLALFTGTAAA--------------DDIEHLTLDVNIGGSELV 46

Query: 61  QVPVDVQD--VLVSDPTKADVVVHSPR--TMYLFGKNVGQANVILIGHDGKQM-LNLDIL 115
           ++    Q   +L+S+          P    +Y  GK +G + V +     +Q+   +D+ 
Sbjct: 47  EIREPSQRMKILISNGDIIGARPLRPNLINVYNLGKKIGFSRVTVWDDAARQVRAIIDVS 106

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +  D+  L+  +       NI+V      VVL G V + +  ++ + L+ETFL +     
Sbjct: 107 VNLDLTPLKQKIGELYPHENIKVYASETGVVLSGTVSSPEVVEQVIRLTETFLPKKAEAS 166

Query: 176 YANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
            +   + K    + NLL++ G  QV L+V  AEV R   +         G          
Sbjct: 167 TSGKGTGKSGSGITNLLSVGGVQQVMLEVKFAEVTRSSGRDWQAALGFNGLGDNSGLVAG 226

Query: 228 ----------KSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                       F    G   ++            +    F + L  LE     R LAEP
Sbjct: 227 VGGISGDISGGDFTGKLGSVLLNFADFASNPANIFVQMGDFTSALRFLEDEGLARILAEP 286

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L  +SGQ ASF +GG+             ++   ++GV L FTP V+S G+I LR+   
Sbjct: 287 RLVTMSGQEASFLAGGEFPIPVPDEDG--ITIEFREFGVSLRFTPVVMSDGKISLRVAPS 344

Query: 336 VSEPVIG--------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           VS+                ++P+   RK +TTV+L  G T+ LAGLL+D +++    IP 
Sbjct: 345 VSDIASTSSIPSSITGTTYNVPNLTTRKLETTVQLYDGQTLALAGLLQDTLRESVSKIPG 404

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PILGALFR++ + +E+T++ IA TP LVKP     LS P ++    +  + +   R
Sbjct: 405 LGDLPILGALFRSTSYTQEKTDLLIAVTPHLVKPSKEGTLSFPGEYMRPPNRLEFYLEGR 464

Query: 448 VNKIYGPKEASEVEGQNYKGA 468
           +     P + S +   ++   
Sbjct: 465 LEGRRFPNDPSALSQHSFAAP 485


>gi|73542329|ref|YP_296849.1| type II and III secretion system protein:transport-associated
           [Ralstonia eutropha JMP134]
 gi|72119742|gb|AAZ62005.1| type II and III secretion system protein:Transport-associated
           [Ralstonia eutropha JMP134]
          Length = 633

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 110/454 (24%), Positives = 206/454 (45%), Gaps = 23/454 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK---KISIGLNKVIILQVPVDVQDVLV 71
              S  P+                      G  +    + + + K  ++ +   V++  +
Sbjct: 56  MTISMAPAGTAPVGAAAPVPVADARGPNCTGAVRQESSVIVPVGKSQLITLQEPVKNRTL 115

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +P      + S +T+Y+ G+ VG  N+I+ G  G     +++++  D   L+ +L + +
Sbjct: 116 GNPNVVQATMVSAQTLYVLGRTVGTTNMIVQGRSGSC-SIINVVVNADAGGLQTSLSQLL 174

Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLN 189
                IRV   +D +VL G V   Q + +A+++++ + + +             V+N+L+
Sbjct: 175 PGEPGIRVMTAADNLVLTGSVTNAQSALQAMDIAQAYANAAQVGAGGDAGKKGGVLNMLS 234

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +    QV L+V +AEV + +L Q+G   ++     G   S+        ++         
Sbjct: 235 VDTPQQVMLEVKVAEVSKTLLNQLGSSVNL----QGGFGSWTGGLVTSLLTGASGAIFGS 290

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----TVSSSTGAT 305
             +   F   + A +  + ++ LAEP L  ISGQ ASF +GG+         V +  G  
Sbjct: 291 KANNKPFNFAIDAQKNDSLVKILAEPNLVTISGQEASFLAGGKIYIPVAQANVLNGAGTV 350

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKA 356
           ++   ++GV L FTPTVL+ GRI L++  EVSE                  +P    R+A
Sbjct: 351 TLQEEEFGVGLKFTPTVLANGRIHLKVAPEVSELSPTGATVSGGTLAGQSVLPLITTRRA 410

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV++  G +  + GLL+D  +   + +P   ++P+LG LFR++++ ++ TE+    TP
Sbjct: 411 STTVQMRDGESFAIGGLLQDSARGSLKALPGAGEVPVLGTLFRSTQYQQDLTELVFIITP 470

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
            LVKP+A  +   P D ++  D    +F   +  
Sbjct: 471 RLVKPMATNNYPLPTDSFTTPDPFSLYFMGNMEG 504


>gi|254255254|ref|ZP_04948570.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
 gi|124900991|gb|EAY71741.1| Flp pilus assembly protein secretin CpaC [Burkholderia dolosa
           AUO158]
          Length = 682

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 120/421 (28%), Positives = 215/421 (51%), Gaps = 19/421 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 92  GAVRDSTSVSVPLGKSLLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGMSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D A L+ +L + + +  ++ V   + T+VL G V + Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAAGLQASLMQLMPNERDVHVSTAAGTIVLSGSVSSSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V ++  +   S  +         V+N+L++    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VAIARAY-GDSAGDGNGGGKPGSVLNMLSVTSPQQVMLEVKVAEVSKTLINQLGSAFNIQ 269

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F   + A      ++ LAEP L  I
Sbjct: 270 GGFGSWSGALVSNLLAGVASGA----VFNKANNRPFSVAVDAQNTDNLVKILAEPNLVTI 325

Query: 281 SGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+    + ++  + T   ++   ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 326 SGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVALKFTPTVLANGRISLKVAPEVS 385

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E               A  +P    R+A TTV++  G T  + GL+KD+     + IP +
Sbjct: 386 ELSQTGVTLSATNVSGASILPLITTRRASTTVQMSDGETFAIGGLIKDNASGALKAIPGV 445

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP++  D++ P D +S  ++A  +    +
Sbjct: 446 GEVPVLGALFRSTSFQQDRTELIFVITPHLVKPLSTADVALPTDSFSKPNEADVYATGYM 505

Query: 449 N 449
            
Sbjct: 506 E 506


>gi|114799407|ref|YP_759869.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
 gi|114739581|gb|ABI77706.1| type II/III secretion system protein [Hyphomonas neptunium ATCC
           15444]
          Length = 432

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 128/452 (28%), Positives = 201/452 (44%), Gaps = 36/452 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  ++R         L  + P++A       A A              ++ +   K  ++
Sbjct: 1   MSGIRRILIASCLAAL-CAQPALAWTQRSAPAGA-------------DQLELRRGKSAVV 46

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +       ++V+DP  A+ +  S R+ ++ GK  G   V++    G     +++ ++  +
Sbjct: 47  EADAAFATIVVADPEIAEAMPTSNRSFFVRGKKPGGTTVLIYDEAGAIAELIEVEVKLGL 106

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L   L R +    I V  V D V L G V T   +  A++L+E  +            
Sbjct: 107 DELRGDLGRLLPGEIIDVYAVHDGVYLDGKVTTAAAADMALQLAERHV------------ 154

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
              V N L++    QV L+V   E  R  +++IGF ++I  +            G    +
Sbjct: 155 PGGVANGLSVGQSQQVMLEVRFLEASRKAVREIGFGNTIDANDVVAGTEGGTVSGLLEKT 214

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                +V   +   + +  L ALE    IRTLAEP L A+SG +ASF +GG+      S 
Sbjct: 215 ----LAVFTNVGGENIDVSLRALEEKGVIRTLAEPNLVALSGDTASFLAGGEFPIPVSSR 270

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKA 356
               T V    +GV L FTPTVL  G + LR++ EVS    G     +  D+P   VR+A
Sbjct: 271 DNEVT-VEFKKFGVSLDFTPTVLGDGLVNLRVRPEVSALDRGNGIRASNIDIPGVSVRRA 329

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DTTVEL  G    +AGLL+++        P L  +PILG+LF + R+ R ETE+ I  TP
Sbjct: 330 DTTVELHDGQAFAIAGLLQNNYTNDVRQTPWLGNVPILGSLFSSKRYQRNETELVIIVTP 389

Query: 417 FLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNR 447
            LV+P +    +  P D  S   +A+ F   +
Sbjct: 390 RLVQPFSHPEAIVSPLDSVSEPTEAELFLLGK 421


>gi|167841781|ref|ZP_02468465.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 433

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 125/446 (28%), Positives = 210/446 (47%), Gaps = 27/446 (6%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                    +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   + 
Sbjct: 2   ARAAEPAPVLAVPAGGGEMVKLPEPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 61

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G + + +L   ++++ D   L+  L       ++ +     ++++ G V +  D+   
Sbjct: 62  ALGANNRTILRETVVVDVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAV 121

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            +  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  
Sbjct: 122 AQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 171

Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271
           G+S                      +S  G FSV G     R+S + VL AL++   I  
Sbjct: 172 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVLGGFHTSRYSIDGVLDALDQEGLITM 231

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+
Sbjct: 232 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 291

Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           ++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +   +P 
Sbjct: 292 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 351

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R
Sbjct: 352 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELHDALDDVTRPSSDIEFVLQR 411

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
              I         +     G  GF+Y
Sbjct: 412 SLGIDPLGG----DAPRLAGPAGFVY 433


>gi|194288836|ref|YP_002004743.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
 gi|193222671|emb|CAQ68674.1| pilus assembly secretion protein [Cupriavidus taiwanensis LMG
           19424]
          Length = 621

 Score =  303 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 111/429 (25%), Positives = 206/429 (48%), Gaps = 21/429 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              I     + + + K  ++ +   V++  + +P+     + SP+T+Y+ G+ VG  N+I
Sbjct: 84  TGAIRSESSVVVPVGKSQLITLQEPVRNRTLGNPSVVQATMVSPQTLYVLGRTVGTTNMI 143

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
           + G  G     +++++  D   L+ +L + +     IRV   +D +VL G V   Q +Q+
Sbjct: 144 VQGRSGSC-SIINVVVNADSGGLQTSLGQLLPGEPGIRVTTAADNLVLTGSVTNAQAAQQ 202

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+E+++ + + +         S  V+N++++    QV L+V +AEV + +L Q+G   ++
Sbjct: 203 AMEIAQAYANAAQGGDGNKKGS--VLNMMSVDTPQQVMLEVKVAEVSKTLLNQLGSAVNL 260

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                G   S++       ++           +   FE  L A +  + ++ LAEP L  
Sbjct: 261 ----QGGFGSWSGGLVTSLLTGASAAVFGSKANNRPFEFALDAQKNDSLVKILAEPNLVT 316

Query: 280 ISGQSASFTSGGQHLYK----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           ISGQ ASF +GG+         V +  G  ++   ++GV L FTPTVL+ GRI L++  E
Sbjct: 317 ISGQEASFLAGGKIYIPVAQANVLNGAGTVTLQEEEFGVGLKFTPTVLANGRIHLKVAPE 376

Query: 336 VSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE                  +P    R+A TTV++  G +  + GLL D  +   + +P
Sbjct: 377 VSELSPTGATIRGGTLAGQTILPVITTRRASTTVQMRDGESFAIGGLLTDSARGSLKALP 436

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
              ++P+LG LFR++++ ++ +E+    TP LVKP+   +   P D +S  +    +F  
Sbjct: 437 GAGEVPVLGTLFRSTQYQQDLSELVFIITPRLVKPMQTNNYPLPTDSFSAPNPLSLYFMG 496

Query: 447 RVNKIYGPK 455
            +       
Sbjct: 497 NMEGDGKRP 505


>gi|167719684|ref|ZP_02402920.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167902788|ref|ZP_02489993.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 448

 Score =  303 bits (775), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
                 AV          G  +++      ++++P     V V+DP  ADV V +P+ ++
Sbjct: 5   ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 64

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           + GK  G   +  +G + + +L   ++++ D   L+  L        + +     ++++ 
Sbjct: 65  VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 124

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G V +  D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+
Sbjct: 125 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 174

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259
           I +Q+G   S  G+S                      +S  G FSV G     R+S + V
Sbjct: 175 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 234

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++   I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FT
Sbjct: 235 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 294

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL+  RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+
Sbjct: 295 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 354

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                +   +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +
Sbjct: 355 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 414

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F   R   I         +     G  GF+Y
Sbjct: 415 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 448


>gi|171320618|ref|ZP_02909638.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171094131|gb|EDT39218.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score =  302 bits (774), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 131/457 (28%), Positives = 214/457 (46%), Gaps = 29/457 (6%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A    +         G  +SI   K  +L +      + V+DP+ AD+ V SPRT+++FG
Sbjct: 18  APGVALAQRAHAADAGAALSIATGKGEMLSLSEPATAMFVADPSIADIQVPSPRTVFVFG 77

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K  G   +I +G + + +L   ++++ D A L+  L        + V     ++++ G V
Sbjct: 78  KKAGTTTLIALGANHRPILRRTVIVQVDTASLQTVLDSRFPQLKLSVSGAPGSLMVSGKV 137

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +  D+   ++    +L+            +K++N L ++   QV L+V + EV R++ +
Sbjct: 138 PSAADADAVMQSLTPYLNDK----------EKIVNRLTLSRPIQVNLRVRVTEVSRNVTQ 187

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFV-------SEGGDFSVKGVL--DRFSFETVLHA 262
           Q+G   S  G++                       S  G +SV G     R+S + VL A
Sbjct: 188 QLGINWSSLGAAGNFIGGLFNGRTLMDPTTKLFNLSPTGAYSVLGGFHAGRWSIDVVLDA 247

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTP 320
           L++   I  LAEP LTA+SGQ+ASF +GG+         S+TGA +V    +GV L FTP
Sbjct: 248 LDQEGLITMLAEPNLTAMSGQTASFLAGGEIPIPVAQAGSTTGAITVEFKPFGVSLDFTP 307

Query: 321 TVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVL+  RI L+++ EVSE      +      +P   VR+ +TTVEL SG +  + GLL+ 
Sbjct: 308 TVLADNRISLKVRPEVSEVDANNSVTTGGVTVPGLTVRRVETTVELSSGQSFAIGGLLQS 367

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                   IP L ++PI+G LF +  F   +TE+ +  TP++V+P     L +  D  + 
Sbjct: 368 QTADTVSQIPGLGRLPIIGRLFSSKNFQDNKTEVVVIVTPYIVQPTGPGQLEQALDTVAR 427

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 F   R   +      +        GA GF+Y
Sbjct: 428 PSSDLEFAVQRNLGLDLLSGET----PRLVGAAGFVY 460


>gi|207744158|ref|YP_002260550.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|206595562|emb|CAQ62489.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 626

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           A        +AA        + +  ++++ + K  ++Q+P  V++  V +P     ++ S
Sbjct: 74  AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
           P+T+YL G+ VG  N+I+ G  G     +D+ +  D   L+ TLR  +  + N++V   +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
           D++VL G V     +Q+ ++++  F+                         G    A   
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           S +++N++ +    QV L+V +AEV + ++ Q+G   ++    +G   S+       F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+        
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
           +         +    +GV L FTPTV+  GRI L++  EVSE              N   
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           TE+    TP LVKP+       P D +   + A+ F    +  
Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530


>gi|167581961|ref|ZP_02374835.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 441

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 128/454 (28%), Positives = 212/454 (46%), Gaps = 27/454 (5%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AAV             +++      ++++P     V V+DP  ADV V +P+ +++ GK
Sbjct: 2   GAAVEPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGK 61

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G   +  +G + + +L   +++  D   L+  L       ++ +     ++++ G V 
Sbjct: 62  KAGTTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVP 121

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q
Sbjct: 122 SAADADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQ 171

Query: 213 IGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHAL 263
           +G   S  G+S                      +S  G FSV G      +S + VL AL
Sbjct: 172 LGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDAL 231

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           ++   I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL
Sbjct: 232 DQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVL 291

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +  RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+    
Sbjct: 292 ADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSS 351

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
            +   +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +    
Sbjct: 352 DVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSS 411

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
              F   R   I         +     G  GF+Y
Sbjct: 412 DIEFVLQRSLGIDPLGG----DAPRLTGPAGFVY 441


>gi|90406750|ref|ZP_01214943.1| RhcC2 protein [Psychromonas sp. CNPT3]
 gi|90312203|gb|EAS40295.1| RhcC2 protein [Psychromonas sp. CNPT3]
          Length = 459

 Score =  302 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 122/458 (26%), Positives = 200/458 (43%), Gaps = 43/458 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
             + K +++ L++  +L +P   + + ++    AD    +   + +FGK VG  ++ ++ 
Sbjct: 17  SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                + +  + +  ++  L   ++    ++ +  E  +  + L G V T   +++ V L
Sbjct: 77  ARENVIYSATVKVNHNVQELNALIKHEFPNAQVHSESTAGKLFLKGQVSTPSIAEKIVRL 136

Query: 164 SETFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTI 202
           +E ++S +G    +  ++                     ++++N L I    QV L+V I
Sbjct: 137 AEGYVSSNGGKSESAGAATEGGAQDDQQGGESAQSTQNTQELINQLVITMPTQVNLRVRI 196

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV R++  ++G +                   G      G  +    +       ++ A
Sbjct: 197 AEVSRNVSNKLGIKWGAQN-------------IGTISGTFGTKNWLPNVKFPDLSIMIDA 243

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L     I  LAEP LTAISG+ ASF  GG+     V   +    +    +GV L F PTV
Sbjct: 244 LASNGLISILAEPNLTAISGERASFLVGGEIPLPVVFGDSAN--IIYKPFGVRLDFKPTV 301

Query: 323 LSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           LS  RI L+I+ EVS      N       +P +  RKA TT+EL SG +  + GLL+   
Sbjct: 302 LSANRIRLQIEPEVSTIAPRTNVQIGGSSLPVFITRKASTTIELASGQSFAIGGLLQSKD 361

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            +  + IPLL  IPILGALFR+S F REETE+ I AT +LV+P      S P D      
Sbjct: 362 IEQLQKIPLLGDIPILGALFRSSEFQREETELIIIATVYLVQPTRSDKFSLPTDGLLPLS 421

Query: 439 DAKAFF---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           D +        +V        +S        G  GF Y
Sbjct: 422 DIERLLAWPHKKVTPTTMGSFSSTPSQPRLLGDNGFYY 459


>gi|121600042|ref|YP_993006.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383335|ref|YP_001026338.1| type II secretion system protein [Burkholderia mallei NCTC 10229]
 gi|126450127|ref|YP_001080388.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|237812165|ref|YP_002896616.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|254178619|ref|ZP_04885274.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|254358540|ref|ZP_04974813.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|121228852|gb|ABM51370.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291355|gb|ABN00624.1| putative type II secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126242997|gb|ABO06090.1| RhcC2 [Burkholderia mallei NCTC 10247]
 gi|148027667|gb|EDK85688.1| RhcC2 [Burkholderia mallei 2002721280]
 gi|160699658|gb|EDP89628.1| RhcC2 [Burkholderia mallei ATCC 10399]
 gi|237503093|gb|ACQ95411.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 482

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV          G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  
Sbjct: 45  AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   +  +G + + +L   ++++ D   L+  L        + +     ++++ G V + 
Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G
Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214

Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
              S  G+S                      +S  G FSV G     R+S + VL AL++
Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+ 
Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334

Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +
Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +      
Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            F   R   I         +     G  GF+Y
Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482


>gi|76811933|ref|YP_333435.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126441311|ref|YP_001058908.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126453026|ref|YP_001066150.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134282366|ref|ZP_01769071.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|217421397|ref|ZP_03452901.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226196310|ref|ZP_03791892.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242314528|ref|ZP_04813544.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254179872|ref|ZP_04886471.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188722|ref|ZP_04895233.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254197611|ref|ZP_04904033.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254261104|ref|ZP_04952158.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254297713|ref|ZP_04965166.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|76581386|gb|ABA50861.1| RhcC2 [Burkholderia pseudomallei 1710b]
 gi|126220804|gb|ABN84310.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126226668|gb|ABN90208.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|134246404|gb|EBA46493.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|157806781|gb|EDO83951.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|157936401|gb|EDO92071.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|169654352|gb|EDS87045.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210412|gb|EDU07455.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|217395139|gb|EEC35157.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225931527|gb|EEH27532.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|242137767|gb|EES24169.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254219793|gb|EET09177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 482

 Score =  301 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV          G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  
Sbjct: 45  AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 104

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   +  +G + + +L   ++++ D   L+  L        + +     ++++ G V + 
Sbjct: 105 GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 164

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G
Sbjct: 165 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 214

Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
              S  G+S                      +S  G FSV G     R+S + VL AL++
Sbjct: 215 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 274

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+ 
Sbjct: 275 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 334

Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +
Sbjct: 335 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 394

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +      
Sbjct: 395 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 454

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            F   R   I         +     G  GF+Y
Sbjct: 455 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 482


>gi|27376953|ref|NP_768482.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
 gi|27350095|dbj|BAC47107.1| RhcC2 protein [Bradyrhizobium japonicum USDA 110]
          Length = 430

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 122/441 (27%), Positives = 200/441 (45%), Gaps = 17/441 (3%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
                      ++I  ++   + +      + V+DP  AD    S  T+++FGK  G+ +
Sbjct: 2   PRAAPGSTTGTLNITSSQGKTVHLSAPAATIFVADPAIADYQAPSSSTIFVFGKKSGRTS 61

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           +  +  +G+ +  L I++ + +  L   L+  + D  I+V       +L G+       +
Sbjct: 62  LFALNENGEALAELRIVVTQPLEDLRAALKAEVGDYPIQVSYTPRGAILSGIAPNADVVE 121

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            A +++E F+           +   V+N + +AG  QV L V +AEV R  +K +    +
Sbjct: 122 AARKVTEQFVG----------AGAPVVNKIQVAGSLQVNLSVRVAEVSRTAVKDLNINFT 171

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +G + G   +     G      GG   +       +   VL AL        LAEP LT
Sbjct: 172 ASGPN-GAFLATGKPGGSGRAGGGGTIGIGFSTGNINLSAVLDALASEHLASILAEPNLT 230

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SG++ASF +GG+     V       SV    +GV L F PTVLS  +I +R++ EVSE
Sbjct: 231 AMSGEAASFLAGGEFPIP-VMQDNRQVSVQFRQFGVSLEFVPTVLSNNQIIVRVKPEVSE 289

Query: 339 PVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                   +N   +P+   R+A T VEL SG +  + GL++ +        P L  +PIL
Sbjct: 290 LSTEGEVKINGMAVPALSTRRASTVVELASGQSFAIGGLIRRNFNTDIGEFPWLGDVPIL 349

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           GALFR+S F + ETE+ I  TP++V+P      +S P +  +   DA     N V +   
Sbjct: 350 GALFRSSSFQKRETELVIVVTPYIVRPGSNPSQISIPTNRIAPPSDAGRILTNTVARPPQ 409

Query: 454 PKEASEVEGQNYKGAIGFIYK 474
            ++A         G  GFI +
Sbjct: 410 GRDAPRASAPGLTGNAGFIIE 430


>gi|148253058|ref|YP_001237643.1| putative pilus assembly protein CpaC [Bradyrhizobium sp. BTAi1]
 gi|146405231|gb|ABQ33737.1| putative Pilus assembly protein cpaC [Bradyrhizobium sp. BTAi1]
          Length = 496

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 212/495 (42%), Gaps = 38/495 (7%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
           T  ++ L ++  S+         +   + +   +    ++IS+  +K   +++       
Sbjct: 4   TWAAVALMAATISIGIYGIGPARSQ--VRVVQDDPVPARQISVTRDKSRTIKLDKPFASA 61

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           LV  P  ADV+  S R +Y+ GK +G  NV L   D   +  + + +  DI ++   +R 
Sbjct: 62  LVGAPDIADVLPMSDRIVYIQGKKIGTTNVTLFDQDKNVIGVIGLEVTIDIQNIASKIRS 121

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                 IRV   ++ +VL G  R   D+++AV ++                 K V+N + 
Sbjct: 122 GTNSPGIRVSSSNNQIVLSGEARDAVDAEKAVAIARGMA----TPPEGKDPEKYVINAMR 177

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------- 233
           +A   QV L+V   EV R   ++IG       +S     +                    
Sbjct: 178 VAASQQVMLRVRFIEVSRQAEREIGVNWFGANASGTRGINTGTGAISQAGPTATSAGVPV 237

Query: 234 -------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                   G    +  G           S + ++ ALE+    R LAEP L A+SG +AS
Sbjct: 238 FNTIGTFAGSTLSAPFGVGLFNLANKGGSVDVLITALEKKGLARRLAEPDLVALSGDTAS 297

Query: 287 FTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
           F +GG++   +V SS+G T V       +GV L F PTVL+ G I LR+   VSE     
Sbjct: 298 FLAGGEYPVPSVQSSSGTTPVITVLYKPFGVQLTFVPTVLASGIINLRLTPSVSELDYTN 357

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + ++   +P+   R+A T +EL  G +  +AGLL+ D  +    +P L  +P+LG LFR
Sbjct: 358 AVAISGTLVPALSKREARTAIELRDGQSFAIAGLLQSDNLRDVGQLPWLGSVPVLGTLFR 417

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ + ++ET++ +  TP LV P A  + L+ P D     +D   F   R        +  
Sbjct: 418 STSYQQKETDLVVIVTPHLVAPAAPGQALATPFDKQLPGNDVDLFLMGRPEVRKQYTD-Y 476

Query: 459 EVEGQNYKGAIGFIY 473
              G    G  G + 
Sbjct: 477 LTSGGANVGPYGHMM 491


>gi|167829715|ref|ZP_02461186.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 9]
          Length = 510

 Score =  300 bits (769), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 72  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 131

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 132 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 190

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 191 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 250

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 251 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 306

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 307 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 366

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 367 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 426

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 427 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 486

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 487 NMEGRGGLRQHG 498


>gi|134291857|ref|YP_001115626.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134135046|gb|ABO59371.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 647

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 121/434 (27%), Positives = 210/434 (48%), Gaps = 18/434 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +     +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 92  GAVRDSTSVSVPLGKSLLVPMPEAVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + +    +I V   + T+VL G V   Q +Q+A
Sbjct: 152 QGKSGACR-VIDVAVGADAGGLQASLLQLMPAERDIHVSTAAGTIVLAGTVSNSQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+++  +   +G  +   +    V+N+L++    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 211 VQIARAYSDSAGGGEGGTAKGGGVLNMLSVTSPQQVMLEVKVAEVSKTLINQMGSALNIQ 270

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     S +  ++      S      V    +   F     A      ++ LAEP L  I
Sbjct: 271 GGFGSWSGALVSNLLAGVASAA----VFNKANNKPFSIAADAQNTDNLVKILAEPNLVTI 326

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS    S       ++GV L FTPTVL+ GRI L++  EVS
Sbjct: 327 SGQEATFLAGGKIFIPVPQSSGTGVSTITLQQEEFGVALKFTPTVLANGRISLKVAPEVS 386

Query: 338 EPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E                  +P    R+A TTV++  G +  + GL+KD+     + IP +
Sbjct: 387 ELSQTGVTLSATNIGGTSILPLITTRRASTTVQMSDGESFAIGGLIKDNATGALKAIPGV 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LVKP+   D   P D +S  ++A  +    +
Sbjct: 447 GEVPVLGALFRSTSFQQDRTELIFLITPHLVKPLQSADQPMPTDSFSKPNEADVYATGNM 506

Query: 449 NKIYGPKEASEVEG 462
              +G +  +    
Sbjct: 507 EGRHGVRRPAAQPA 520


>gi|148976307|ref|ZP_01813031.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
 gi|145964401|gb|EDK29656.1| type II and III secretion system protein [Vibrionales bacterium
           SWAT-3]
          Length = 464

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 114/459 (24%), Positives = 204/459 (44%), Gaps = 44/459 (9%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + + +N+  ++++P   + + +S    AD    +   + +FGK  G A + ++ 
Sbjct: 21  ASAASALDVTINEAKMIRLPEKAKSIFISSTHIADYQTLTNTKVMVFGKRAGSATITVLN 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + +    I +  +       ++    ++++  E +   + L G V +   +   V L
Sbjct: 81  EQERVIYTNKIRVTHNSREFNELVKNKFPEASVNAESLGGKLWLKGRVPSPMMAHNIVSL 140

Query: 164 SETFLS----------------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
           ++ +LS                         ++Q  +S  ++++N L +   +QV ++V 
Sbjct: 141 AKGYLSPIVNQTEQKEGSNTNKNNSSDSALTQSQPTSSKEEELINQLVVTMPNQVNIRVK 200

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           IAEV R++  ++G +        G                   F       + S  T++ 
Sbjct: 201 IAEVSRNVSNKLGIKWGSLAGGVGQFYF-------------AKFPNVSSWGKPSITTLVD 247

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL     +  LAEP LTA+SG+ A F  GGQ     +++ T  T +   D+GV L+FTPT
Sbjct: 248 ALASNGMMSVLAEPNLTAMSGEDAEFLVGGQVPLPLITADT--TQIEYKDFGVKLNFTPT 305

Query: 322 VLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  RI L++  EVS   I     +   + PS+  R A TT+EL SG +  L GLLK +
Sbjct: 306 VLSQNRISLKVNPEVSNVSIDGQQVIQGANFPSFTTRSASTTIELASGQSFALGGLLKSE 365

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +  + +PL+++IP+LG+LFR++ F R ETE+ I  T +LV+P     +  P D     
Sbjct: 366 DIEQLQKVPLVAEIPVLGSLFRSTEFTRRETELIIIVTAYLVQPTRSDSMQLPTDGLIPL 425

Query: 438 DDAKAFF-FNRVNKIYGPKEASEVE--GQNYKGAIGFIY 473
            D +      R+ +     + +  +       G  GF Y
Sbjct: 426 SDVERLLALPRIQRKRTHDQDTYTDNQKPRLLGDNGFYY 464


>gi|207728106|ref|YP_002256500.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206591351|emb|CAQ56963.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 626

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 116/463 (25%), Positives = 214/463 (46%), Gaps = 42/463 (9%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
                    +AA        + +  ++++ + K  ++Q+P  V++  V +P     ++ S
Sbjct: 74  PATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
           P+T+YL G+ VG  N+I+ G  G     +D+ +  D   L+ TLR  +  + N++V   +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
           D++VL G V     +Q+ ++++  F+                         G    A   
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           S +++N++ +    QV L+V +AEV + ++ Q+G   ++    +G   S+       F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+        
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
           +         +    +GV L FTPTV+  GRI L++  EVSE              N   
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           TE+    TP LVKP+       P D +   + A+ F    +  
Sbjct: 489 TELVFVVTPHLVKPL-PAQYPLPTDSFGRANPAEIFLNGNMEG 530


>gi|53719431|ref|YP_108417.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
 gi|167815898|ref|ZP_02447578.1| RhcC2 [Burkholderia pseudomallei 91]
 gi|167845816|ref|ZP_02471324.1| RhcC2 [Burkholderia pseudomallei B7210]
 gi|52209845|emb|CAH35817.1| putative fimbriae assembly-related protein [Burkholderia
           pseudomallei K96243]
          Length = 439

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV          G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  
Sbjct: 2   AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 61

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   +  +G + + +L   ++++ D   L+  L        + +     ++++ G V + 
Sbjct: 62  GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 121

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G
Sbjct: 122 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 171

Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
              S  G+S                      +S  G FSV G     R+S + VL AL++
Sbjct: 172 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 231

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+ 
Sbjct: 232 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 291

Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +
Sbjct: 292 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 351

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +      
Sbjct: 352 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 411

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            F   R   I         +     G  GF+Y
Sbjct: 412 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 439


>gi|258405291|ref|YP_003198033.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257797518|gb|ACV68455.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 455

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 202/441 (45%), Gaps = 22/441 (4%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG--KKISIGLNKVIILQVPVDVQD 68
           ++   +      V  +P   +A    I  +         + + +   K ++L+   ++  
Sbjct: 11  LLIAAIMVLTFCVWSIPQEPQAQEFRIIPTKNSADDSIMRSLELTYGKSVVLKSNREITR 70

Query: 69  VLVSDPTKA-DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           V   DP    D ++  P  +YL     G AN+IL     +     +I ++ D++ L+  L
Sbjct: 71  VSEPDPNVLKDPLLIGPNELYLTPAGAGTANLILW-QGKEVSTVYEITVKHDLSRLKQRL 129

Query: 128 RRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
                + N +RV   ++++ L G V +     + + L+ET+  + G           + N
Sbjct: 130 HELFPEENELRVLSTNESITLSGQVSSASALDQIMALAETYAPEGG-----------IKN 178

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            + + G  QV L+V +AEV R  L ++G    +   ++  S  F            G F+
Sbjct: 179 QVTVKGIHQVMLEVKVAEVSRQSLDRLGINFDLINDAAEFSIGFLGAASAGSSGS-GSFN 237

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                D   F  +   L+R    + LAEP+L ++SGQ++SF +GG+     V  S G   
Sbjct: 238 FWRNGDNVDFNGLFDFLKREGLAKILAEPSLISMSGQTSSFLAGGEIPIPDV-DSDGNIG 296

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVEL 362
           V    YG+ L FTPTV+S  RI +++   VSE        +N   +P  +VR+A+TTVEL
Sbjct: 297 VEFKSYGIELAFTPTVMSKERIAIKVVPVVSELDEASGTVINGAQVPGLKVRRANTTVEL 356

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G +  +AGLL ++ ++     P L  +P+LG LF +  F  +ETE+ I  TP LV P+
Sbjct: 357 GDGQSFAIAGLLSENSEETVSKFPGLGDLPVLGPLFTSKSFTSDETELVIMVTPKLVTPL 416

Query: 423 AMRDLSRPDDHYSVEDDAKAF 443
                S P D +    DA+ +
Sbjct: 417 VAEKQSLPTDFFIHPTDAEFY 437


>gi|167824270|ref|ZP_02455741.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167919049|ref|ZP_02506140.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 444

 Score =  300 bits (768), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/458 (28%), Positives = 213/458 (46%), Gaps = 27/458 (5%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
                 AV          G  +++      ++++P     V V+DP  ADV V +P+ ++
Sbjct: 1   ALALGMAVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVF 60

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           + GK  G   +  +G + + +L   ++++ D   L+  L        + +     ++++ 
Sbjct: 61  VLGKKAGTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVS 120

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G V +  D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+
Sbjct: 121 GRVPSAADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRN 170

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETV 259
           I +Q+G   S  G+S                      +S  G FSV G     R+S + V
Sbjct: 171 ITQQLGINWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGV 230

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L AL++   I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FT
Sbjct: 231 LDALDQEGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFT 290

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PTVL+  RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+
Sbjct: 291 PTVLADNRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQ 350

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
                +   +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +
Sbjct: 351 SKSSDVLAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVT 410

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                  F   R   I         +     G  GF+Y
Sbjct: 411 RPSSDIEFVLQRSLGIDPLGG----DAPRLAGPAGFVY 444


>gi|83719085|ref|YP_442980.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257139204|ref|ZP_05587466.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652910|gb|ABC36973.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 492

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 126/451 (27%), Positives = 210/451 (46%), Gaps = 27/451 (5%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V             +++      ++++P     V V+DP  ADV V +P+ +++ GK  G
Sbjct: 56  VAPRLARAAEPAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAG 115

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
              +  +G + + +L   +++  D   L+  L       ++ +     ++++ G V +  
Sbjct: 116 TTTLFALGANDRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAA 175

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G 
Sbjct: 176 DADAVVQTLKPYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGI 225

Query: 216 QHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERA 266
             S  G+S                      +S  G FSV G      +S + VL AL++ 
Sbjct: 226 NWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQE 285

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  
Sbjct: 286 GLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADN 345

Query: 327 RIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     + 
Sbjct: 346 RISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVL 405

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       
Sbjct: 406 AELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIE 465

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           F   R   I         +     G  GF+Y
Sbjct: 466 FVLQRSLGIDPLGG----DAPRLTGPAGFVY 492


>gi|254182583|ref|ZP_04889177.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|184213118|gb|EDU10161.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
          Length = 690

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 509 NMEGRGGLRQHG 520


>gi|167911033|ref|ZP_02498124.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 438

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 129/452 (28%), Positives = 213/452 (47%), Gaps = 27/452 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV          G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  
Sbjct: 1   AVAPRFARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKA 60

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   +  +G + + +L   ++++ D   L+  L        + +     ++++ G V + 
Sbjct: 61  GTTTLFALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSA 120

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D+   V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G
Sbjct: 121 ADADAVVQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLG 170

Query: 215 FQHSITGSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALER 265
              S  G+S                      +S  G FSV G     R+S + VL AL++
Sbjct: 171 INWSALGASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQ 230

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              I  LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+ 
Sbjct: 231 EGLITMLAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLAD 290

Query: 326 GRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L+++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +
Sbjct: 291 NRISLKVRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDV 350

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +      
Sbjct: 351 LAELPGLARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDI 410

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            F   R   I         +     G  GF+Y
Sbjct: 411 EFVLQRSLGIDPLGG----DAPRLAGPAGFVY 438


>gi|323493503|ref|ZP_08098625.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
 gi|323312326|gb|EGA65468.1| Flp pilus assembly protein CpaC [Vibrio brasiliensis LMG 20546]
          Length = 458

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 113/453 (24%), Positives = 194/453 (42%), Gaps = 38/453 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++ 
Sbjct: 21  ASLAAPLEVTINQAKMINLPQDAKSIFISNTHVADYQPMTNTKIMVFGLQAGSATITILN 80

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              + + N  I +  D   L   +     +++++ E +   + L G V T   +   V +
Sbjct: 81  AQERVIYNNKIRVTHDTFELNSLISSQFPEASVKSESLGGKLWLKGSVPTPVMAHSIVNI 140

Query: 164 SETFLSQSGRN----------------QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
           ++ +LS                     +    S  +++N L +    QV ++V IAEV R
Sbjct: 141 AKGYLSPPTAGQSSDSSSDSESSNNTSEQQGDSGNELVNQLVVTMPTQVNIRVRIAEVSR 200

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           ++  ++G +     S  G      A                    + +   ++ AL    
Sbjct: 201 NVSNKLGIKWGSLESGMGSFLYTKA-------------WDVSSWGKPTLGALIDALASDG 247

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            +  LAEP LTA+SG+ A+F  GG+     +   T    V    +GV L+FTP VL P R
Sbjct: 248 TMSILAEPNLTAMSGEEANFLVGGEIPLPLIIGDTAT--VEYKPFGVNLNFTPVVLGPDR 305

Query: 328 IGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I LR+  EVS    +    +N    PS+  R+A TT+EL SG +  L GLL+       +
Sbjct: 306 ISLRVSPEVSSISVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQ 365

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P +  +P+LG LFR+S + R ETE+ I AT +LV+PV    +  P D      D +  
Sbjct: 366 KLPGIGDMPVLGGLFRSSDYQRRETELIIIATAYLVEPVRNDAIPLPTDSLLPLSDLERL 425

Query: 444 F---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                 R  ++ G    ++       G  GF Y
Sbjct: 426 LAIPRKRDKQVKGKATYTDNRAPRLLGDNGFYY 458


>gi|167620125|ref|ZP_02388756.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 427

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 125/441 (28%), Positives = 209/441 (47%), Gaps = 27/441 (6%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G +
Sbjct: 1   PAAVLAVPAGGGEMVKLPQPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGAN 60

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            + +L   +++  D   L+  L       ++ +     ++++ G V +  D+   V+  +
Sbjct: 61  DRTILRETVVVNVDTPSLQRILDARFPQLHLTLAGAPGSLMVSGRVPSAADADAVVQTLK 120

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
            +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S  
Sbjct: 121 PYLRQQ----------ESLVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGN 170

Query: 226 PSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPT 276
                               +S  G FSV G      +S + VL AL++   I  LAEP 
Sbjct: 171 FVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSHYSIDGVLDALDQEGLITMLAEPN 230

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EV
Sbjct: 231 LTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEV 290

Query: 337 SEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           SE     +       +P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P
Sbjct: 291 SEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLP 350

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I 
Sbjct: 351 VLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDITRPSSDIEFVLQRSLGID 410

Query: 453 GPKEASEVEGQNYKGAIGFIY 473
                   +     G  GF+Y
Sbjct: 411 PLGG----DAPRLTGPAGFVY 427


>gi|237509564|ref|ZP_04522279.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001769|gb|EEP51193.1| type II/III secretion system protein [Burkholderia pseudomallei
           MSHR346]
          Length = 690

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 509 NMEGRGGLRQ 518


>gi|187919324|ref|YP_001888355.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187717762|gb|ACD18985.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 595

 Score =  300 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 122/477 (25%), Positives = 214/477 (44%), Gaps = 45/477 (9%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
                +++              A        + +   ++I + K  ++ V   V+   V 
Sbjct: 78  VHLTIAASGMGPGAASGGAQQGARGPNCSGPVAEHSSVTIPVGKSTMVDVREPVKSRSVG 137

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           +P     ++ SP+T+YL G +VG  N+I+ G  G     +D+ +  D   L+ TL   + 
Sbjct: 138 NPAIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQTLAALMP 196

Query: 133 DS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY--------------- 176
           +   I+V+  +DT+VL G V     ++R +EL+  F+++                     
Sbjct: 197 EETGIQVKAAADTLVLTGTVSDAVKAERVLELARAFVARPTAALQGGAPMGSGPLPVGAA 256

Query: 177 -----------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                        +S ++++N++++A   QV L+V +AEV + ++ Q+G   +I G    
Sbjct: 257 PRAMGMPAPTLGGASGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAANINGGIGS 316

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            S    AD    ++S G         +       + A +    ++ LAEP L AISGQ A
Sbjct: 317 WSFGLLAD----YLSGGLSALTASKANNSPLRAAIDAQKTDQLVKILAEPNLMAISGQEA 372

Query: 286 SFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           SF +GG+       S   +     +    YGV L FTPTVL  GRI L++  EVSE    
Sbjct: 373 SFLAGGKVYIPVPQSNGANGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPEVSELSST 432

Query: 343 ---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                     N   +P    R+A TT+++  G +  + GLLK +I    +G+P  +++P+
Sbjct: 433 GVVVSAGNSNNQTILPLITTRRASTTLQVFDGQSFAIGGLLKSNITGSIKGLPGAAELPV 492

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           LGALFR++ + +++TE+    TP L KP+  +    P DH+    +A  +    +  
Sbjct: 493 LGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDHFGDASEANVYLTGHMEG 548


>gi|167738675|ref|ZP_02411449.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
          Length = 434

 Score =  300 bits (767), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 127/446 (28%), Positives = 211/446 (47%), Gaps = 27/446 (6%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                 G  +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   + 
Sbjct: 3   ARAADLGPVLAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLF 62

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G + + +L   ++++ D   L+  L        + +     ++++ G V +  D+   
Sbjct: 63  ALGANNRTILRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAV 122

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+  + +L Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  
Sbjct: 123 VQTLKPYLRQQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSAL 172

Query: 221 GSSSGPSKSFAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRT 271
           G+S                      +S  G FSV G     R+S + VL AL++   I  
Sbjct: 173 GASGNFVGGLFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITM 232

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTAISGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+
Sbjct: 233 LAEPNLTAISGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLK 292

Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           ++ EVSE     +       +P+  VR+ DTTVEL SG +  + GLL+     +   +P 
Sbjct: 293 VRPEVSEIDPTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPG 352

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L+++P+LG LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R
Sbjct: 353 LARLPVLGKLFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQR 412

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
              I         +     G  GF+Y
Sbjct: 413 SLGIDPLGG----DAPRLAGPAGFVY 434


>gi|167744175|ref|ZP_02416949.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 14]
          Length = 439

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 123/438 (28%), Positives = 219/438 (50%), Gaps = 20/438 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 6   GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 65

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 66  QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 124

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 125 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 184

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 185 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 240

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 241 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 300

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 301 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 360

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 361 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 420

Query: 447 RVNKIYGPKEASEVEGQN 464
            +    G ++        
Sbjct: 421 NMEGRGGLRQHGAAPAAA 438


>gi|260463894|ref|ZP_05812090.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259030269|gb|EEW31549.1| type II and III secretion system protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 481

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 123/478 (25%), Positives = 218/478 (45%), Gaps = 26/478 (5%)

Query: 1   MRYL-----QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55
           MR L     +  F   +++ +  +  ++        A+  ++ +S  +      I +   
Sbjct: 3   MRTLYGMTGRSCFVRALAMAVSLAAGAMLAFAGAARADNDIVYVSATKNA---SIKVAKG 59

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           K   +        +++ DP  A+V   + ++ Y+ G N+G   + L     + +  +DI 
Sbjct: 60  KPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTTGIALFDDKKQLVGTVDIE 119

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +  D   L  T+R  + D+ I+V   +  VVL G       +++A +++  F        
Sbjct: 120 VTLDTDELANTIRASVPDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSGN----- 174

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                 ++V+N +NI+   QV L V   E+ R   + +G ++S   +     +  + + G
Sbjct: 175 ------EEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLEPG 228

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               +  G+   + + +  S +  + ALE     R LAEP L A SG++ASF +GG+   
Sbjct: 229 TVPAAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPI 288

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSY 351
             VS   G  SV+   YGV L F PTVL  G + L I  EVS         +    +P +
Sbjct: 289 P-VSEENGKISVSYKKYGVSLDFKPTVLKDGLVSLDIAPEVSSIDASASYNIGNISVPGF 347

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            VR+A T+V+L +G + ++AGLL+         IP L K+P+LGALF +  + R ET++ 
Sbjct: 348 IVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLV 407

Query: 412 IAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           I  TP+LVKPV   + ++ P +      +A  +F N   ++ G      +   +   A
Sbjct: 408 IIVTPYLVKPVDPSKKMAEPTNGTQPASNAD-YFLNNTEEVKGSDTNRALAMADGGAA 464


>gi|167821374|ref|ZP_02453054.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 91]
          Length = 494

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/437 (28%), Positives = 219/437 (50%), Gaps = 20/437 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 63  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 122

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 123 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 181

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 182 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 241

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 242 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 297

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 298 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 357

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 358 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 417

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 418 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 477

Query: 447 RVNKIYGPKEASEVEGQ 463
            +    G ++       
Sbjct: 478 NMEGRGGLRQHGAAPAA 494


>gi|186474103|ref|YP_001861445.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184196435|gb|ACC74399.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 700

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/468 (26%), Positives = 218/468 (46%), Gaps = 47/468 (10%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              I   + ++I + K  ++ V   V+   V +P+    ++ SP+T+YL G +VG  N+I
Sbjct: 109 TGAIADHQTVTIPIGKSTMVNVRESVKTRTVGNPSIVQAMLVSPQTLYLLGTDVGTTNMI 168

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
           + G  G     +D+ +  D   L+ TL   + +   ++V+  +DT+VL G V     ++R
Sbjct: 169 VQGRSGSC-TVIDVAVGADPGGLQQTLAVLMPEESGVQVKAAADTLVLTGTVSDSVKAER 227

Query: 160 AVELSETFLSQSG--------------------------RNQYANSSSKKVMNLLNIAGE 193
            VEL+  ++++                                 N ++++++N++++A  
Sbjct: 228 IVELARAYVARQAAPVPVAAPANAGGAQGGAMIPAVLKPAGASGNGNNERIVNMMHVAAP 287

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V +AEV + ++ Q+G       +  G + S++      F+S G    +    + 
Sbjct: 288 QQVMLEVKVAEVSKTLIDQLGMA----ANIQGGTGSWSFGLLADFLSGGMGALLGSKANN 343

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTH 310
                 + A +    ++ LAEPTL AISGQ ASF +GG+       S+        +   
Sbjct: 344 KPLNFAIDAQKTDQLVKVLAEPTLMAISGQEASFLAGGRVFIPVPQSNGAAGSTIILQEE 403

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDMPSYRVRKADTTVE 361
            +GV L FTPTVL  GRI L++  EVSE                  +P    R+A TT++
Sbjct: 404 TFGVGLTFTPTVLDNGRINLKVSPEVSELSPTGVAVTAGTVSTTAVLPLITTRRASTTLQ 463

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G +  + GL+K ++    +G+P L ++P+LGALFR++ F  ++TE+    TP L KP
Sbjct: 464 VYDGQSFAIGGLMKSNVTGTLKGLPGLGEVPVLGALFRSTNFQEDKTELVFVVTPRLAKP 523

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           +  ++   P DH+    +A  FF   +       +A         GA 
Sbjct: 524 L-PQNYPLPTDHFGKVTEAGVFFTGNMEG--KKPQAPAEAVPPSTGAA 568


>gi|76819084|ref|YP_336469.1| phospholipid-binding domain-containing protein [Burkholderia
           pseudomallei 1710b]
 gi|254264517|ref|ZP_04955382.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|76583557|gb|ABA53031.1| Putative phospholipid-binding domain family [Burkholderia
           pseudomallei 1710b]
 gi|254215519|gb|EET04904.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 690

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 509 NMEGRGGLRQHG 520


>gi|126456485|ref|YP_001076989.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242311194|ref|ZP_04810211.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|126230253|gb|ABN93666.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|242134433|gb|EES20836.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
          Length = 690

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 509 NMEGRGGLRQ 518


>gi|167841773|ref|ZP_02468457.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 484

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 129/438 (29%), Positives = 221/438 (50%), Gaps = 26/438 (5%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 15  GEMRESTNVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 75  QGKSGAC-QIIDVAVGADADGLQTSLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133

Query: 161 VELSETFLSQSGRNQYAN--------SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           V +++ +  ++      N        SS   V+N+L +    QV L+V +AEV + ++ Q
Sbjct: 134 VAIAKAYSDRTNAGAAGNGNGNGGGGSSRADVLNMLTVTSPQQVMLEVKVAEVSKTLINQ 193

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +G   +I     G   S+        ++  G   V    ++      + A +    ++ L
Sbjct: 194 MGSAVNI----QGGFGSWTGALMTSLLTGVGSGIVASKSNKLPLSGAIDAQDTDQPVKIL 249

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           AEP L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI 
Sbjct: 250 AEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRIS 309

Query: 330 LRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L++  EVSE              N   +P    R+A TTV++  G T  + GL+KD+ Q 
Sbjct: 310 LKVAPEVSELSPTGVTLSASNVGNVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQG 369

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
             + +P + ++P+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++A
Sbjct: 370 TLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLDTADVPLPTDSFTKPNEA 429

Query: 441 KAFFFNRVNKIYGPKEAS 458
             +    +    G ++  
Sbjct: 430 DVYATGNMEGRGGLRQHG 447


>gi|296156489|ref|ZP_06839327.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295893088|gb|EFG72868.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 599

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 121/485 (24%), Positives = 216/485 (44%), Gaps = 46/485 (9%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAA-VINISDVEIGKGKKISIGLNKVIILQVPVD 65
           T  +  S+ L  +   +        A            + +   ++I + K  ++ V   
Sbjct: 75  TVASNGSVHLTIAASGMGPGAYSGGAQQGGRGPNCTGPVAEHSSVTIPVGKSAMVDVREP 134

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V+   V +P+    ++ SP+T+YL G +VG  N+I+ G  G     +D+ +  D   L+ 
Sbjct: 135 VKSRTVGNPSIVQAMLVSPQTLYLLGSDVGTTNMIVQGRSGSC-TIIDVSVGADPGGLQQ 193

Query: 126 TLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY-------- 176
           TL   + +   I+V+  +DT+VL G V     + R +EL+  F+++              
Sbjct: 194 TLAALMPEETGIQVKAAADTLVLTGTVSDAVKADRVLELARAFVARPTTALQGGAPMGSG 253

Query: 177 ------------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                               +  ++++N++++A   QV L+V +AEV + ++ Q+G   +
Sbjct: 254 PLPVGAAPRAMGMPAPSLGGAGGERIINMMHVAAPQQVMLEVKVAEVSKTLIDQLGVAAN 313

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     S    AD    ++S G         +    +  + A +    ++ LAEP L 
Sbjct: 314 INGGIGSWSFGLLAD----YLSGGLSALTASKANNSPLKAAIDAQKTDQLVKILAEPNLM 369

Query: 279 AISGQSASFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           AISGQ ASF +GG+          S      +    YGV L FTPTVL  GRI L++  E
Sbjct: 370 AISGQEASFLAGGKVYIPVPQSNGSGGTTIVLQEEQYGVGLTFTPTVLEGGRINLKVSPE 429

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE                  +P    R+A TT+++  G +  + GLLK ++    +G+P
Sbjct: 430 VSELSSTGVVVSAGNSNTTSILPLITTRRASTTLQVFDGQSFAIGGLLKSNVTGSIKGLP 489

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
             +++P+LGALFR++ + +++TE+    TP L KP+  +    P D++    +A  +   
Sbjct: 490 GAAELPVLGALFRSTSYEQDKTELVFVVTPRLAKPL-PQHYPLPTDNFGDASEANVYLTG 548

Query: 447 RVNKI 451
            +   
Sbjct: 549 HMEGT 553


>gi|261251598|ref|ZP_05944172.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938471|gb|EEX94459.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 457

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 117/449 (26%), Positives = 199/449 (44%), Gaps = 37/449 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + + +N+  ++ +P D + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  AAPLEVNINEAKMINLPQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143

Query: 167 FLS---------------QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +LS                S      + +S +++N L +    QV ++V IAEV R++  
Sbjct: 144 YLSPVIAPQQSENGSTSSDSSTQNSGSDNSDELVNQLMVTMPTQVNIRVRIAEVSRNVSN 203

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G +     +  G      A                    + +   ++ AL     +  
Sbjct: 204 KLGIKWGSLQAGMGSFLYTKA-------------WDVSSWGKPTLGALVDALASDGTMSI 250

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG+ ASF  GG+     ++  T    V    +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEDASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308

Query: 332 IQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS    +    +N    PS+  R+A TT+EL SG +  L GLL+       + +P 
Sbjct: 309 VSPEVSSVSVDNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444
              IPILG LFR+S + R+ETE+ I AT +LV+PV    L  P D+     D +      
Sbjct: 369 AGDIPILGGLFRSSEYQRKETELIIIATAYLVEPVRNDALPLPTDNLLPLSDLERLLAIP 428

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            +R  ++ G    ++       G  GF Y
Sbjct: 429 RSRGKQVKGKDTYTDNRAPRLLGDNGFYY 457


>gi|167851182|ref|ZP_02476690.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei B7210]
          Length = 449

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 125/445 (28%), Positives = 220/445 (49%), Gaps = 20/445 (4%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A          E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+Y
Sbjct: 1   AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLY 60

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
           L G +VG  N+I+ G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL
Sbjct: 61  LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
            G V + Q +Q+AV +++ + +++      +    +  V+N+L +    QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   +I G     + +         ++  G        ++      + A   
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
              ++ LAEP L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295

Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           LS GRI L++  EVSE              N   +P    R+A TTV++  G T  + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           +KD+ Q   + +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D 
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++  ++A  +    +    G ++  
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440


>gi|302381756|ref|YP_003817579.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192384|gb|ADK99955.1| type II and III secretion system protein [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 520

 Score =  299 bits (765), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 141/508 (27%), Positives = 238/508 (46%), Gaps = 68/508 (13%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
            LP    A     + +       + I++       + +P D +DV+VS+P  A+  VHSP
Sbjct: 23  TLPSAVLAQDHAGSQTVAAGSGPRLINLPRGTSFAVDLPADARDVIVSNPAVAEANVHSP 82

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           R + + G   G+ + + +   G+ +L L + ++  +  L+ TL R    + +  E V+D+
Sbjct: 83  RRITVIGIAPGETDAVFLDAAGRSILTLRVRVDAGVTALQDTLSRVAPGAQVHAEAVNDS 142

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +VL G+V +   S++  +++  F+          S+ +KV+N+L IAG DQVTLKV I E
Sbjct: 143 IVLTGLVTSAAQSEQVAQVARAFV----------SAPEKVLNMLTIAGSDQVTLKVRIIE 192

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSF--- 256
           V+R+ +KQ+GF  +      G ++   +        G  +        +     F     
Sbjct: 193 VQRNAIKQLGFDTAAALGRVGDTQFLLSQAASFGVNGSLLGGISAGVSRNTTQNFQLQGP 252

Query: 257 -----------------------------------------ETVLHALERATAIRTLAEP 275
                                                      ++ A ER   IRTLAEP
Sbjct: 253 CGPGFPADSLCPFTVDGPEDASNWDTAQPGTGPGSDDLNKGNAMIKAFERVGLIRTLAEP 312

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            LT+++G+SASF +GG+    T     G  ++    YGV L F P VLS GRI L+I  E
Sbjct: 313 NLTSVNGESASFLAGGEFPVPTGRDRDGNVTIEFKPYGVSLGFRPIVLSEGRISLQISAE 372

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE               A ++    VR+   TVE+PSGG++++AGLL++  +Q  + +P
Sbjct: 373 VSELTQTGGITLGAGTSTALNIAGLNVRRVQNTVEIPSGGSMMIAGLLQESTRQAIDSLP 432

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  +P+LG LFR+  +   ETE+ +   P++V P +   L  P D   +  DA+  FF 
Sbjct: 433 GLGGLPVLGQLFRSRDYLSGETELVVIVEPYIVTPTSPNRLQTPADGLRIATDAQTIFFG 492

Query: 447 RVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           ++N+ YG    ++     ++G +G++ +
Sbjct: 493 QLNQAYGSPAPTDTASAGWQGPVGYVIE 520


>gi|167916476|ref|ZP_02503567.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 112]
          Length = 452

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A          E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+Y
Sbjct: 1   AAAAVPLRGPSCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
           L G +VG  N+I+ G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL
Sbjct: 61  LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
            G V + Q +Q+AV +++ + +++      +    +  V+N+L +    QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   +I G     + +         ++  G        ++      + A   
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
              ++ LAEP L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295

Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           LS GRI L++  EVSE              N   +P    R+A TTV++  G T  + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           +KD+ Q   + +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D 
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++  ++A  +    +    G ++  
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440


>gi|300704930|ref|YP_003746533.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299072594|emb|CBJ43944.1| pilus assembly secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 622

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/463 (25%), Positives = 215/463 (46%), Gaps = 42/463 (9%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           A        +AA        + +  ++++ + K  ++Q+P  V++  V +P     ++ S
Sbjct: 74  AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
           P+T+YL G+ VG  N+I+ G  G     +D+ +  D   L+ TLR  +  + N++V   +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLVPGAKNVQVSAAA 192

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
           D++VL G V     +Q+ ++++  F+                         G    A   
Sbjct: 193 DSLVLSGSVSDSVQAQKVLDIANAFVMRQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           S +++N++ +    QV L+V +AEV + ++ Q+G   ++    +G   S+       F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+        
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVAQG 368

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGD 347
           +         +    +GV L FTPTV+  GRI L++  EVSE              N   
Sbjct: 369 AATNGVATIILQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNNTSI 428

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+A TT+++  G +  + GL+K+++    + IP + ++P++GAL R++ F +++
Sbjct: 429 LPLITTRRASTTLQVHDGQSFAIGGLIKNNVTGSLKAIPGIGELPVIGALARSTSFQQDQ 488

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           TE+    TP LVKP+       P D +   + A+ F    +  
Sbjct: 489 TELVFVVTPRLVKPL-PAQYPLPTDSFGQANPAEIFLNGNMEG 530


>gi|167894387|ref|ZP_02481789.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
          Length = 426

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 126/437 (28%), Positives = 210/437 (48%), Gaps = 27/437 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++      ++++P     V V+DP  ADV V +P+ +++ GK  G   +  +G + + +
Sbjct: 4   LAVPAGGGEMVKLPAPAVAVFVADPDVADVHVPTPQAVFVLGKKAGTTTLFALGANNRTI 63

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L   ++++ D   L+  L        + +     ++++ G V +  D+   V+  + +L 
Sbjct: 64  LRETVVVDVDTPSLQRILDARFPQLRLTLAGAPGSLMVSGRVPSAADADAVVQTLKPYLR 123

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           Q           + ++N L +A   QV L+V I EV R+I +Q+G   S  G+S      
Sbjct: 124 QQ----------EALVNRLTLARPIQVHLRVRITEVDRNITQQLGINWSALGASGNFVGG 173

Query: 230 FAADFG-------GKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAI 280
                           +S  G FSV G     R+S + VL AL++   I  LAEP LTAI
Sbjct: 174 LFNGRTLFDTASKAFDLSPSGAFSVVGGFHTSRYSIDGVLDALDQEGLITMLAEPNLTAI 233

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SGQ+ASF +GG+        +TGA ++    YGV L FTPTVL+  RI L+++ EVSE  
Sbjct: 234 SGQTASFLAGGEFPIPVAQDTTGAITIQFKPYGVSLDFTPTVLADNRISLKVRPEVSEID 293

Query: 341 IGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              +       +P+  VR+ DTTVEL SG +  + GLL+     +   +P L+++P+LG 
Sbjct: 294 PTNSVTTGSIKVPALTVRRVDTTVELSSGQSFAIGGLLQSKSSDVLAELPGLARLPVLGK 353

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           LF +  +  ++TE+ +  TP++V+P    +L    D  +       F   R   I     
Sbjct: 354 LFSSRNYLNDKTEVVVIVTPYIVQPANPGELRDALDDVTRPSSDIEFVLQRSLGIDPLGG 413

Query: 457 ASEVEGQNYKGAIGFIY 473
               +     G  GF+Y
Sbjct: 414 ----DAPRLAGPAGFVY 426


>gi|167574003|ref|ZP_02366877.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 548

 Score =  298 bits (764), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 90  GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 149

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V   Q +Q+A
Sbjct: 150 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 208

Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           V +++ +  ++     A + +      V+N+L +    QV L+V +AEV + ++ Q+G  
Sbjct: 209 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 268

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +I G     +    +          G+       ++  F+  L A      ++ LAEP 
Sbjct: 269 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 324

Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           L  ISGQ A+F +GG+    + ++  + T   ++   ++GV L FTPTVLS GRI L++ 
Sbjct: 325 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 384

Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q     
Sbjct: 385 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 444

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++   + 
Sbjct: 445 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 504

Query: 445 FNRVNKIYG 453
              +    G
Sbjct: 505 TGNMEGRGG 513


>gi|53723207|ref|YP_112192.1| outer membrane protein [Burkholderia pseudomallei K96243]
 gi|52213621|emb|CAH39675.1| putative outer membrane protein [Burkholderia pseudomallei K96243]
          Length = 690

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 509 NMEGRGGLRQHG 520


>gi|326388864|ref|ZP_08210446.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326206464|gb|EGD57299.1| type II and III secretion system protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 565

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 131/482 (27%), Positives = 220/482 (45%), Gaps = 38/482 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
                +   L ++ P +   P           ++       + ++I + +  ++ +P ++
Sbjct: 33  AILPGLPAALSAATPHMKAKPRALAVLHTTPPMTPGVTAPARSLAISIGRGELVTLPGNM 92

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            DV V++   ADV V S   +Y+FGK  G+  V      G  + + +I +  ++  ++  
Sbjct: 93  TDVFVANENIADVQVKSGNQLYIFGKAGGETTVYASNGRGDVIWSANIRVGNNLDSIDQM 152

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L   + +++I    +++TV+L G V   +D+  A  L + F+ +             V++
Sbjct: 153 LHMAMPEAHIATATMNNTVLLTGTVSAPEDAAEAERLVKAFVGEKT----------NVIS 202

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------- 233
            L +A   QV L V  AEV R + + I    +   ++SG                     
Sbjct: 203 RLKMATPLQVNLHVKFAEVSRTLTRSIQSNWTTADATSGLKFGLGQGRSFFPQYVPGGPL 262

Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                          VS G   ++   +   SF   L   E    + TLAEP LTA+SG+
Sbjct: 263 GMGTATTTGATAVSPVSTGTTLALASKVFGLSFLAALDLAESIGLVSTLAEPNLTALSGE 322

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
           +A F +GG++    VSS  G   V   +YGV L +TPTVL+ GRI LR++ EVSE     
Sbjct: 323 TAEFLAGGEYPIP-VSSGLGTVPVQYKNYGVSLAYTPTVLANGRISLRVRPEVSELSSDG 381

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            + +N   +P+  VR+A+TT+EL SG + ++AGLLK+  Q     +P    +PILG+LFR
Sbjct: 382 AVSLNGYSVPALSVRRAETTIELGSGQSFMIAGLLKNSSQNTIAKMPGAGDLPILGSLFR 441

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           ++ + R ETE+ I  TP+LV PV   ++  P D +      K    N  +      E  +
Sbjct: 442 STSYQRGETELVIIVTPYLVNPVDPSEIHLPTDGFKSAGALKQILGNLESDGVVDGERPK 501

Query: 460 VE 461
             
Sbjct: 502 PT 503


>gi|217424167|ref|ZP_03455666.1| outer membrane protein [Burkholderia pseudomallei 576]
 gi|217392632|gb|EEC32655.1| outer membrane protein [Burkholderia pseudomallei 576]
          Length = 673

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGVGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 509 NMEGRGGLRQHG 520


>gi|254192422|ref|ZP_04898861.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|169649180|gb|EDS81873.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
          Length = 690

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 509 NMEGRGGLRQ 518


>gi|126445563|ref|YP_001064076.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|126225054|gb|ABN88559.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
          Length = 690

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 123/436 (28%), Positives = 218/436 (50%), Gaps = 24/436 (5%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPREHDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           V +++ + +++      +           V+N+L +    QV L+V +AEV + ++ Q+G
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGNGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMG 272

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              +I G     + +         ++  G        ++      + A      ++ LAE
Sbjct: 273 SAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAE 328

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           P L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L+
Sbjct: 329 PRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLK 388

Query: 332 IQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  EVSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   
Sbjct: 389 VAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTL 448

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  
Sbjct: 449 KALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADV 508

Query: 443 FFFNRVNKIYGPKEAS 458
           +    +    G ++  
Sbjct: 509 YATGNMEGRGGLRQHG 524


>gi|167725247|ref|ZP_02408483.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei DM98]
          Length = 448

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 124/445 (27%), Positives = 220/445 (49%), Gaps = 20/445 (4%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A          E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+Y
Sbjct: 1   AAAAVPLRGPNCVGEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLY 60

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
           L G +VG  N+I+ G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL
Sbjct: 61  LVGMSVGTTNMIVQGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVL 119

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEV 205
            G V + Q +Q+AV +++ + +++      +    +  V+N+L +    QV L+V +AEV
Sbjct: 120 AGNVSSAQAAQQAVAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEV 179

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            + ++ Q+G   +I G     + +         ++  G        ++      + A   
Sbjct: 180 SKTLINQMGSAVNIQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNT 235

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTV 322
              ++ LAEP L  ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTV
Sbjct: 236 DQPVKILAEPRLVTISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTV 295

Query: 323 LSPGRIGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           LS GRI L++  EVSE              N   +P    R+A TTV++  G T  + GL
Sbjct: 296 LSNGRISLKVAPEVSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGL 355

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           +KD+ Q   + +P + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D 
Sbjct: 356 IKDNAQGTLKALPGIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDS 415

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++  ++A  +    +    G ++  
Sbjct: 416 FTKPNEADVYATGNMEGRGGLRQHG 440


>gi|86360580|ref|YP_472468.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
 gi|86284682|gb|ABC93741.1| cpaC pilus assembly Q protein [Rhizobium etli CFN 42]
          Length = 495

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 125/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S         A +A      + +G+  + +++  N+ + 
Sbjct: 1   MANGRRRIARTKSLAALAAVFSACVCLGPGFAGSASAQEKSITLGESVQHVTLPPNETLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S +++++ GK  G  N+ + G D   +  +DI +  D
Sbjct: 61  LNTGQPFGDLVIGSADMIDVVPLSDKSLFIRGKKTGATNISVYGDDKSLLGVIDIRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + +RV   +D + L G VR   + QR +E+++++            
Sbjct: 121 FSEVASAIRSAAPSARVRVINSNDRIRLTGFVRDGIELQRVMEIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
           S + V+N L ++   QV L+V + E  R   + +G   S  G+++   K+  +       
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGIAVDD 228

Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                            +  G   +    +     + V++ALE+   +R LA+P L A+S
Sbjct: 229 GSLARTLLDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEI 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  LAGLL+    +  + +P L +IP+LGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGQIPVLGALFR 408

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ F ++E+++ I  TP +V+P     DL  P D     +D + F    +  +       
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467

Query: 459 EVEGQNYKGAIGFIY 473
              G    G  G   
Sbjct: 468 FRNGVGVTGPYGHRL 482


>gi|134281876|ref|ZP_01768583.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|134246938|gb|EBA47025.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
          Length = 685

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 388

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 389 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 448

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 449 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 508

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 509 NMEGRGGLRQHG 520


>gi|167908129|ref|ZP_02495334.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
          Length = 460

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/430 (28%), Positives = 219/430 (50%), Gaps = 20/430 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K ++L +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 19  GEMRESTSVSVPLGKSLLLPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 78

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 79  QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 137

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 138 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 197

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 198 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 253

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 254 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 313

Query: 336 VSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 314 VSELSPTGVTLSAANMGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 373

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 374 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 433

Query: 447 RVNKIYGPKE 456
            +    G ++
Sbjct: 434 NMEGRGGLRQ 443


>gi|312883754|ref|ZP_07743473.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368503|gb|EFP96036.1| Flp pilus assembly protein CpaC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 460

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 115/452 (25%), Positives = 196/452 (43%), Gaps = 40/452 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + + +N+  ++ +  D + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  AEPLEVNINEAKMINLSQDAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITILNAQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + N  I +  D   L+  +     ++++  E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYNNKIRVVHDTKELDSLIAAQFPEASVHSESLGGKLWLKGNVPTPVMAHSIVSVAKG 143

Query: 167 FLSQSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +LS    N                  N +  +++N L +    QV ++V IAEV R++  
Sbjct: 144 YLSPVTANAQSEKGSTSPDSSTHSRGNENEDELINQLVVTMPTQVNIRVRIAEVSRNVSN 203

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G +    G   G      A                    + +   ++ AL     +  
Sbjct: 204 KLGIKWGSVGEGIGSFLYTKA-------------WDVSSWGKPTLSGLVDALASDGTMSI 250

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP LTA+SG+ ASF  GG+     ++  T    V    +GV L+FTP VL P RI LR
Sbjct: 251 LAEPNLTAMSGEEASFLVGGEIPLPLINGDTAT--VEYKPFGVNLNFTPVVLGPDRISLR 308

Query: 332 IQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS         +N    PS+  R+A TT+EL SG +  L GLL+       + +P 
Sbjct: 309 VSPEVSSVSVSNQTTLNGNTYPSFTSRRATTTIELASGQSFALGGLLQSSEIDQLQKLPG 368

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF--- 444
              IPILG LFR++ + R+ETE+ I AT +LV+PV    L  P D+     D +      
Sbjct: 369 AGDIPILGGLFRSNEYQRKETELIIIATAYLVEPVRNDTLPLPTDNLLPRSDLERLLVAF 428

Query: 445 ---FNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
                +  ++ G    ++       G  GF Y
Sbjct: 429 PRKRGKQKQVKGKDTYTDNRAPRLLGDNGFYY 460


>gi|167617230|ref|ZP_02385861.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis Bt4]
          Length = 468

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 15  GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 75  QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133

Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           V +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 134 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           ++ G     + +         ++  G+       ++      + A      ++ LAEP L
Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   TS       ++GV L FTPTVLS GRI L++  
Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309

Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q   + +
Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +  
Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429

Query: 446 NRVNKIYGPKEAS 458
             +    G ++  
Sbjct: 430 GNMEGRGGLRQHG 442


>gi|167579115|ref|ZP_02371989.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis TXDOH]
          Length = 462

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 15  GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 74

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 75  QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 133

Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           V +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 134 VAIAKAYSDRTNAAALGGGGGGPRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 193

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           ++ G     + +         ++  G+       ++      + A      ++ LAEP L
Sbjct: 194 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 249

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   TS       ++GV L FTPTVLS GRI L++  
Sbjct: 250 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 309

Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q   + +
Sbjct: 310 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 369

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +  
Sbjct: 370 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 429

Query: 446 NRVNKIYGPKEAS 458
             +    G ++  
Sbjct: 430 GNMEGRGGLRQHG 442


>gi|46204251|ref|ZP_00050268.2| COG4964: Flp pilus assembly protein, secretin CpaC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 472

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 132/435 (30%), Positives = 218/435 (50%), Gaps = 24/435 (5%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+     ++S       P+     P   A     +      G+ +++ +   + +I+ +
Sbjct: 6   RLRTIVLALLSAACLGQVPARRAKTPDCPAR-PRSDDRAERSGQSRRVELSKGRSLIVDL 64

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P D ++V V++P  A+ VV S R ++L G   G  ++ ++  +G+Q+  LD+ I RDI  
Sbjct: 65  PRDAKEVFVANPAVANAVVRSSRKLFLIGIENGATSIFVMDAEGRQIAALDVTIARDINV 124

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  +L++ +   +I V+ V D++VL G V +  ++Q+A++++              ++  
Sbjct: 125 LRQSLQQSLPGRHIDVKAVGDSLVLSGGVSSASEAQQAIDIANA--FVGIAGGAGGAARG 182

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADF 234
            V+N L I  +DQV ++VT+ EV R ++KQ G   +   S+  P        + +     
Sbjct: 183 AVINNLTIRNKDQVMIRVTVVEVARSVIKQFGISTTGNWSALNPLDSTGNFLTNNTGFPL 242

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G F   G   +       FS +  L A E+A   R LAEPTLTAISG++A FT+GG+  
Sbjct: 243 TGAFTPSGNALTASVRSGGFSLQATLRAFEQAGVSRILAEPTLTAISGEAAKFTAGGEIP 302

Query: 295 YKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344
                      S    S+    YGV L FTP VL+  RI +R+ T+V+E     +     
Sbjct: 303 VPANCSVGAVGSACTISLVYKPYGVSLSFTPVVLAENRISIRVATDVTELDTQNSFSYNL 362

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P+ R R ++TTVEL SG T++ AGL++   +    G+P L  +PILGALFR+ 
Sbjct: 363 NGRVVPVPATRRRNSETTVELASGATMMTAGLIQQQNKGTINGLPGLMNLPILGALFRSR 422

Query: 402 RFNREETEIFIAATP 416
            F R+E E+ I  TP
Sbjct: 423 DFQRDENELMILVTP 437


>gi|323700359|ref|ZP_08112271.1| type II and III secretion system protein [Desulfovibrio sp. ND132]
 gi|323460291|gb|EGB16156.1| type II and III secretion system protein [Desulfovibrio
           desulfuricans ND132]
          Length = 476

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/427 (26%), Positives = 199/427 (46%), Gaps = 25/427 (5%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A V     V+  K   IS+ + +  ++    +V  + +   T   +VV SP  +YL    
Sbjct: 23  ATVAWARVVKSDKPDMISMIIGESTVITTDQNVSRITLGSDTVCSIVVISPTQIYLTANE 82

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVR 152
           +G   + L   D +     DI ++ D   L+  +   +   N +RV    +++ L G V 
Sbjct: 83  IGSTTLTLWTGD-RVSEIYDIAVDPDTTRLKRMIYELLPQENNVRVLTSGNSITLSGQVS 141

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                   + L+E              +  +V+NLL++ G  QV L+V +AE+ R + K+
Sbjct: 142 NATSLSSVLSLAEAA------------APGRVVNLLSVDGIQQVMLEVRVAEMSRSVTKR 189

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKF------VSEGGDFSVKGVLDRFSFETVLHALERA 266
           +G   +  GS+                     +++  + +   V    +   ++ AL+  
Sbjct: 190 LGLNFAAIGSNFSIYSIINNLTSYNNEDNVFELTDNINLAGSYVSGNTTIHGMVDALKSN 249

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +R LAEP LT +SG++A F  GG+       S+ G   +    +G+ L FT TV+S G
Sbjct: 250 GLVRMLAEPNLTCVSGEAAEFLVGGEVPIPM-PSALGTVGIDYKPFGIALKFTATVMSSG 308

Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L++  EVSE      + V+  ++P+   R+A+T VEL  G + V+AGL+ D +++  
Sbjct: 309 RINLQVNPEVSELDYSKALSVSGYEIPTISTRRANTVVELGDGQSFVIAGLISDSLKENA 368

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
              P L ++P+LG+LF +  FN  +TE+ +  T  L KPV M   + P D +   DD + 
Sbjct: 369 HKFPGLGEVPVLGSLFSSKDFNSNKTELVVLVTAHLAKPVDMATQTLPTDGFREPDDREF 428

Query: 443 FFFNRVN 449
           + F  + 
Sbjct: 429 YLFGLLE 435


>gi|254293214|ref|YP_003059237.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
 gi|254041745|gb|ACT58540.1| type II and III secretion system protein [Hirschia baltica ATCC
           49814]
          Length = 535

 Score =  298 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 151/537 (28%), Positives = 256/537 (47%), Gaps = 78/537 (14%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIG---KGKKISIGLNKVIIL 60
           +++   +     +   + S      +    +  I +   E G     + +++  NK  +L
Sbjct: 9   IKKILLSACVAAIGFGSESAFAQNSLAGGVSETIRVRVTEPGQSATSRTLNLSQNKTAVL 68

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERD 119
           +   DV D+LV++P  ADV+  S R + +  K  G++++I     GK++L+LD+ +  + 
Sbjct: 69  EFEEDVDDILVANPEIADVLARSKRRIAVLAKGKGESSIIFTNAQGKEILSLDVIVAGQG 128

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           ++ L+  + +++  S I+ E V+  +VL G   ++ D+  A++L++ F+           
Sbjct: 129 VSELQALIEQYVPRSAIKAEFVNGAIVLAGKSPSLSDADMAIQLAQQFVVDD-------- 180

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------------- 222
               V+N+++I G+DQV LKV I E++R ++KQ+G   S + +                 
Sbjct: 181 --SPVINMISIEGKDQVLLKVRIVEMQRSVIKQLGVNLSGSMNIGELANKSVQTAYDAVT 238

Query: 223 ---------------------------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
                                       +  S   + +  G         +  G   + S
Sbjct: 239 GEVLLDAAGEALQVLAPAAPWDQSVSFGTSNSLGISGESLGGMSLSPSYNNYVGDKLQSS 298

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               +  LER   +RTLAEP LTA+SG+SA F +GG+    +   S G   +    +GV 
Sbjct: 299 AGFSVDMLERIGLVRTLAEPNLTALSGESAKFLAGGEFPVPSEVDSDGEVVLEFKPFGVG 358

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------------------AGDMPSYRVRKA 356
           L FTP VLS  RI +RI TEVSE                         A  +P+ +VR+A
Sbjct: 359 LGFTPVVLSESRISMRISTEVSELTSTGGYQIGGTTYVDGAGNTVSTPAVVIPALKVRRA 418

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DTTVE+PSGG++V+AGL+++   Q  + +P +  +P++G+LFR+  F   ETE+ +  TP
Sbjct: 419 DTTVEMPSGGSLVIAGLIQEQTSQAMDKVPGVGNLPVIGSLFRSREFQNNETELVVIVTP 478

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           +LV P   + L  PDD Y    DAKA FF ++N++Y  + A   E     G  GFI+
Sbjct: 479 YLVDPTDPKKLRSPDDGYVAAKDAKAIFFGKMNEVYAVEGADVEETAGING-AGFIF 534


>gi|260778162|ref|ZP_05887055.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260606175|gb|EEX32460.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 469

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 107/454 (23%), Positives = 199/454 (43%), Gaps = 35/454 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              + + +N+  ++++    + + +S+   AD    +   + +FG   G A + ++    
Sbjct: 24  ANALEVNINEAKMIRLSEKAKSIFISNTHIADYQPMTNTKIMVFGMQAGTATITVLNEQE 83

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + + +  I +  D   L+  ++    D+++  E +   + L G V T   +   V +++ 
Sbjct: 84  RVIYSNKIRVVHDTQELDELIKAQFPDASVNSESLGGKLWLKGSVPTPVMAHSIVNVAKG 143

Query: 167 FLSQSGRNQYANSS--------------------SKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +LS     Q +N++                      +++N L +    QV +++ IAEV 
Sbjct: 144 YLSPIVAPQESNNNDSSKSSNSSESNSENQQNSNGDELINQLVVTMPTQVNIRIRIAEVS 203

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R++  ++G +     ++    ++    F      +   +       + +   ++ AL   
Sbjct: 204 RNVSNKLGIKWGSLVTNGSTVENTVGSFLYNKPWDVSSW------GKPNLSALVDALAST 257

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +  LAEP LTA+SG+ A+F  GG+     +   T    V    +GV L+F P VL P 
Sbjct: 258 GDMSILAEPNLTAMSGEEANFLVGGEVPIPLIQGDTAT--VEYKPFGVNLNFKPVVLGPD 315

Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L+++ EVS   +      N   +PS+  R+A TT+EL SG +  L GLL+    +  
Sbjct: 316 RISLKVEPEVSSVSVDNQAVLNGNVLPSFTSRRASTTIELASGQSFALGGLLQSSEIEQL 375

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P +  IPILG LFR++ + R ETE+ I AT +LV+P    +L  P D    + D + 
Sbjct: 376 QKLPGMGDIPILGGLFRSNEYQRRETELIIIATAYLVEPTRSDNLPIPTDALIPQSDLER 435

Query: 443 FFFNRVNKIYGPKEASEVE---GQNYKGAIGFIY 473
                     G    +           G  GF Y
Sbjct: 436 LLALPDEDFVGTSGKATYTDNRKPRLLGDNGFYY 469


>gi|327189767|gb|EGE56911.1| cpaC pilus assembly Q protein [Rhizobium etli CNPAF512]
          Length = 495

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 127/490 (25%), Positives = 219/490 (44%), Gaps = 34/490 (6%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           +R+  T     L ++  +   L P     A+    S       + +++  N+ + L    
Sbjct: 6   RRSARTKSLAALAATFSACVILGPGFAGYASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
              D+++      DVV  S +++++ GK  G  N+ + G D   +  +DI +  D + + 
Sbjct: 66  PFGDLVIGSADMIDVVPLSDKSLFVRGKKTGATNISVYGDDKSLLGVIDIRVASDFSEVS 125

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             +R     + +RV   +D + L G+VR   + QR +E+++++            S + V
Sbjct: 126 AAIRSAAPTARVRVFNSNDRIRLVGVVRDSIELQRVLEIAQSY------------SEQPV 173

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------ 232
           +N L ++   QV L+V I E  R   + +G   S  G+++   K+  +            
Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGYGNNNRIGKATTSQGITVDDGNLAR 233

Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                       +  G   +    +     + V++ALE+   +R LA+P L A+SG +AS
Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293

Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           F +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE    +N
Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPSIN 353

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P +  R A TTV L  G +  LAGLL+    +  + +P L +IP+LGALFR++ F 
Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQMPGLGQIPVLGALFRSTSFQ 413

Query: 405 REETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           ++E+++ I  TP +V+P     DL  P D     +D + F    V ++          G+
Sbjct: 414 KKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALG-VMEVDKDMLRRFRNGE 472

Query: 464 NYKGAIGFIY 473
              G  G   
Sbjct: 473 GVTGPYGHRL 482


>gi|94497254|ref|ZP_01303826.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94423359|gb|EAT08388.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 486

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 125/464 (26%), Positives = 210/464 (45%), Gaps = 28/464 (6%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L     ++           + +N +   +     + + +    ++ +P  + DV+++DP 
Sbjct: 4   LAGPAIAIGLAVACAAVPTSALNAATSSMQDNAIL-LSVGGSRVINLPAKMSDVVIADPE 62

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
             DV V S   +YL  K  G+  V     +GK + +  + +  +I  ++  LR  +  +N
Sbjct: 63  VVDVHVRSQNQLYLIAKKAGETTVFATAPNGKVLFSGTVRVGNNITSIDDMLRIAMPGAN 122

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I V  ++  V+L G ++  +D+     L++ F+ +             V++ L +A   Q
Sbjct: 123 IAVNTMNGMVLLTGTIQAPEDAAEVERLTQAFVGKDVT----------VVSRLRMATPLQ 172

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------GKFVS 240
           V L+V IAEV +D+  +IG   +    S G                            + 
Sbjct: 173 VMLQVKIAEVAKDVGHKIGTNFASVDRSGGKVAGNVGGGLRDFAQYNADTNSWDFTNPID 232

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G        +        L   E +    TLA+P LTA+SG++ASF +GG++ Y   + 
Sbjct: 233 GGYSLGGVARILGMDIAGALDLAESSGLASTLAQPNLTALSGETASFLAGGEYPYTVSNG 292

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G  S+    YGV L FTPTVL+ GRI LR++  VS     +NA ++P+ + R A+TTV
Sbjct: 293 LQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSINA-NVPALKSRTAETTV 350

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL SG   ++AGLL ++       +P L  +PILG+LF++ +F R ETE+ I  TP+LVK
Sbjct: 351 ELGSGQAFMIAGLLNNEASNNVNKVPGLGNLPILGSLFKSRQFQRNETELVIVVTPYLVK 410

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           P+   D+  P D +   D  +  F  R +               
Sbjct: 411 PMNASDVRLPTDGFRNADLGEGLFLQRSHSGTSGARRPMPSRAP 454


>gi|13471032|ref|NP_102601.1| secretory protein [Mesorhizobium loti MAFF303099]
 gi|14021776|dbj|BAB48387.1| probable secretory protein [Mesorhizobium loti MAFF303099]
          Length = 461

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/462 (26%), Positives = 214/462 (46%), Gaps = 23/462 (4%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L +    +  LP + +A+  ++ +S  +      I +   K   +        +++
Sbjct: 1   MAAALVAGA--MLALPGVAKADNDIVYVSATKNA---SIKVAKGKPKTIVTNAAFYQIVI 55

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            DP  A+V   + ++ Y+ G N+G   + L     + +  +DI +  D   L  T+R  +
Sbjct: 56  GDPEIANVNPLTDKSFYVLGNNLGTTGIALFDEKKQLVGTVDIEVTLDTDQLASTIRASV 115

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            D+ I+V   +  VVL G       +++A +++  F             +++V+N +NI+
Sbjct: 116 PDAKIKVGSANGRVVLSGEADDAVAAEKANKIATRFSG-----------TEEVINSVNIS 164

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L V   E+ R   + +G ++S   +     +  + D G    +  G+   + + 
Sbjct: 165 SSQQVQLNVRFVEINRQAGQDLGAKYSANFAYGFGGRDVSLDPGTVPAAGTGEIIGRLLS 224

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +  S +  + ALE     R LAEP L A SG++ASF +GG+     VS   G  SV+   
Sbjct: 225 NGVSIDIAIKALEERGLARRLAEPNLIARSGETASFLAGGEFPIP-VSEDNGKISVSYKK 283

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367
           YGV L FTPTVL  G + L I  EVS         +    +P + VR+A T+V+L +G +
Sbjct: 284 YGVSLDFTPTVLKDGLVSLDIAPEVSSIDASSSYNIGTISVPGFIVRRAKTSVDLKNGQS 343

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RD 426
            ++AGLL+         IP L K+P+LGALF +  + R ET++ I  TP+LVKPV   + 
Sbjct: 344 FMIAGLLQSQNDITTSRIPGLGKMPVLGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKK 403

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           +  P D      +   +F N   ++        +   +   A
Sbjct: 404 MVEPTDGTRPASNVD-YFLNNTEEVKASDAGRALALADGSAA 444


>gi|167899813|ref|ZP_02487214.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei 7894]
          Length = 473

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 123/432 (28%), Positives = 219/432 (50%), Gaps = 20/432 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 36  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 95

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 96  QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 154

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 155 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 214

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 215 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 270

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ISGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  E
Sbjct: 271 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPE 330

Query: 336 VSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           VSE              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P
Sbjct: 331 VSELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALP 390

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            + ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +   
Sbjct: 391 GIGELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATG 450

Query: 447 RVNKIYGPKEAS 458
            +    G ++  
Sbjct: 451 NMEGRGGLRQHG 462


>gi|145219384|ref|YP_001130093.1| type II and III secretion system protein [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205548|gb|ABP36591.1| type II and III secretion system protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 472

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/496 (25%), Positives = 208/496 (41%), Gaps = 69/496 (13%)

Query: 1   MRYLQRTFFTM--MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
           M YL R+   M   +  L S  P      P                       + + +  
Sbjct: 5   MSYLMRSGCRMSAFAALLSSIAPVAGLAAPSTYF-------------------VPVGESR 45

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           + ++   ++ V V +P  AD ++ +   +YL GK  G  N+IL    GK   +  + + R
Sbjct: 46  VYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLILWNQQGK-FTSTLLQVSR 104

Query: 119 DIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN--- 174
           +   ++  LR  + +   I++    + +VL G V     ++ A  L + +L     +   
Sbjct: 105 NSYPIKQLLRTALPEESEIQIFSSGEALVLAGSVSNRLAAETAYRLVKAYLGGKVPDVNP 164

Query: 175 -------------------------------QYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
                                             +++   V+NLL +    QV L+V IA
Sbjct: 165 ESSLAKTTSASAASASIAGTTNGSSAVPVQASTQSTAPAGVVNLLTVRDTQQVRLEVRIA 224

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EV +  L+ +G            + +        FVS      +         E  + A 
Sbjct: 225 EVSKTYLQTLGIGWQQ------GTGNTQGSLMTGFVSNATLNVLLQTKSNPGNELSMDAE 278

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            +   I+ LAEPTL A+SG+   F  GG+    TV+S+     V    YGV L FTPTVL
Sbjct: 279 RKEGVIKILAEPTLVAMSGEEGYFLVGGKVFTPTVTSNGAIDYVERT-YGVGLRFTPTVL 337

Query: 324 SPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
             GRI L++  EVSEP    V    +  +P ++   A +TV++  G  +V+ GLL+D++ 
Sbjct: 338 DSGRISLKVAPEVSEPLKEAVTAGTSTPLPGFKTSFASSTVQMNEGENLVIGGLLRDNLT 397

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
           ++   +PLLS IPILG+LFR++  + E TE+ +   P L+K  +      P D ++    
Sbjct: 398 EVVRAVPLLSDIPILGSLFRHTEKSSETTELMVIIRPTLIKA-STTAQELPTDKFAPPSS 456

Query: 440 AKAFFFNRVNKIYGPK 455
           ++ F   ++    G K
Sbjct: 457 SELFLEGKLQGSRGSK 472


>gi|299067807|emb|CBJ39018.1| pilus assembly secretion protein [Ralstonia solanacearum CMR15]
          Length = 635

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 117/498 (23%), Positives = 223/498 (44%), Gaps = 55/498 (11%)

Query: 17  FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
            ++N  +        A+ A  N          +    ++++ + K  ++Q+   V+   V
Sbjct: 60  MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLSEPVRSRTV 119

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +P     ++ SP+T+YL G++VG  N+I+ G  G     +D+ +  D   L+ TL   +
Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178

Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182
            ++  +RV   +D++VL G V     +Q+ ++++  F+ +  R    +  +         
Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIMDIANAFVMRETRGPAQSGQAGTMGMQGMT 238

Query: 183 -----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
                                  +++N++++    QV L+V +AEV + ++ Q+G   ++
Sbjct: 239 AMSTGNAATASSGSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL 298

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
               +G   S+       F+S   D       ++  F+  L A +    ++ LAEP L A
Sbjct: 299 ----NGSFGSWTFGALANFLSGAPDIFSVDKANKLPFQLKLDAQKGDGLVKVLAEPNLMA 354

Query: 280 ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ ASF +GG+       S    T +  +    +GV L FTPTVL  GRI L++  EV
Sbjct: 355 ISGQEASFLAGGKVYIPVPQSFGSGTTSILLQEETFGVGLRFTPTVLENGRINLKVAPEV 414

Query: 337 SEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE                  +P    R+A TT+++  G +  + GL+K +I    + IP 
Sbjct: 415 SELSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNITGSLKAIPG 474

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + ++P++GAL R++ F +++TE+    TP LVKP+   +   P D +   +  + +    
Sbjct: 475 VGELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGN 533

Query: 448 VNKIYGPKEASEVEGQNY 465
           +      + A      ++
Sbjct: 534 MEGHPAQRPAPASTQGSF 551


>gi|83716099|ref|YP_440456.1| type II and III secretion system protein [Burkholderia
           thailandensis E264]
 gi|83649924|gb|ABC33988.1| Bacterial type II and III secretion system protein domain protein
           [Burkholderia thailandensis E264]
          Length = 679

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/433 (28%), Positives = 216/433 (49%), Gaps = 21/433 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +G+   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GAMGESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           V +++ +  ++               V+N+L +    QV L+V +AEV + ++ Q+G   
Sbjct: 213 VAIAKAYSDRTNAGALGGGGGGTRAGVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAV 272

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           ++ G     + +         ++  G+       ++      + A      ++ LAEP L
Sbjct: 273 NLQGGFGSWTGALVTSL----LTGVGNGIAVSKSNKLPLNGSIDAQNTDQPVKILAEPRL 328

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
             ISGQ A+F +GG+       SS   TS       ++GV L FTPTVLS GRI L++  
Sbjct: 329 VTISGQEATFLAGGKIFIPVPQSSGVGTSTITLQQEEFGVGLKFTPTVLSNGRINLKVAP 388

Query: 335 EVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q   + +
Sbjct: 389 EVSELSPTGVTLSAANVGGVSILPLITTRRASTTVQMNDGETFAIGGLIKDNAQGTLKAL 448

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P + ++P+LGALFR++ F ++ TE+    TP LVKP+A  D+  P D ++  ++A  +  
Sbjct: 449 PGIGELPVLGALFRSTSFQQDRTELVFIITPHLVKPLAAADVPLPTDSFTQPNEADVYAT 508

Query: 446 NRVNKIYGPKEAS 458
             +    G ++  
Sbjct: 509 GNMEGRGGLRQHG 521


>gi|103486617|ref|YP_616178.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98976694|gb|ABF52845.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 493

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 127/481 (26%), Positives = 217/481 (45%), Gaps = 34/481 (7%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
                 +   ++  +     A  +    +         I + + +  ++ +P  + DV V
Sbjct: 7   FKAAALARTLAIGLVAATLIAAPSRPVAAQAVQNASSSIDLSVGRGRLISLPAAMSDVFV 66

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           +D   ADV V S R +Y+F K  G+ ++      G+ + +    +  +I  ++  L   +
Sbjct: 67  ADDKVADVQVRSSRQLYVFAKAPGETSIYATDASGRVVFSTVARVGNNIETIDQMLSLAM 126

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            +++I    ++  V+L G VR+  D+  A  L + F+              KV++ L  A
Sbjct: 127 PEASIAANTMNGFVLLTGTVRSPDDAAEAERLVQAFVGDQT----------KVLSRLRTA 176

Query: 192 GEDQVTLKVTIAEVRRDILKQI---------------GFQHSITGSSSGPSKSFAADFGG 236
              QV L+V IAEV R ++K++               GF   + G     + +  A+   
Sbjct: 177 TPLQVNLQVRIAEVNRSLVKELSGNLLTRDTDGPLGNGFLGGVFGGRQAGTITTDANGNT 236

Query: 237 ----KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                        +  G L        L   ER+  + TLA+P LTAISG++A F +GG+
Sbjct: 237 IYSITTPPGTRSLAGAGRLFGLDLIASLDIGERSGLVATLAQPNLTAISGETADFLAGGE 296

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDM 348
                +  +   T++    YGV L +TPTVLS GRI LR++ EVSE             +
Sbjct: 297 FPVP-IPGNFAGTTIEYRKYGVSLAYTPTVLSNGRISLRVRPEVSELSTEGAIEMQGFQI 355

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+  +R+A+TTVEL SG + ++AGLL +      + +P L  +P+LG LF++  F R ET
Sbjct: 356 PALTIRRAETTVELGSGESFMIAGLLNNRSIGAIDKMPGLGDVPLLGTLFKSDSFRRGET 415

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           E+ I  TP+LV+PV+  D+  P D +   DD +    N+ +      +  +    +  G 
Sbjct: 416 ELVIVVTPYLVEPVSANDIKLPTDAFRDADDLQRLLLNQTSDGVTGGDRPKPRLDSNVGD 475

Query: 469 I 469
            
Sbjct: 476 A 476


>gi|241662165|ref|YP_002980525.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|240864192|gb|ACS61853.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 603

 Score =  297 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 114/488 (23%), Positives = 214/488 (43%), Gaps = 40/488 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M +                   +A         +    ++++ + K  ++Q+P  V+   
Sbjct: 59  MAASGPIQLTIGSPATAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRT 118

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V +P     ++ SP+T+Y+ G  VG  N+I+ G  G     +D+ +  D   L+ TLR+ 
Sbjct: 119 VGNPNVVQAMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKL 177

Query: 131 IADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------------------ 171
           + ++ N++V   +D++VL G V     +Q+ V+++  F+ +                   
Sbjct: 178 MPEARNVQVSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGEQNATGQGGQQ 237

Query: 172 --GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                  A   S +++N++ +    QV L+V +AEV + ++ Q+G   +  G+    S  
Sbjct: 238 LHTAGPGAPLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFG 297

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             A+    F+S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +
Sbjct: 298 AIAN----FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLA 353

Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--- 342
           GG+        +         +    +GV L FTPTV+  GRI L++  EVSE       
Sbjct: 354 GGKVFIPVAQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVA 413

Query: 343 ------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                  N   +P    R+A TT+++  G +  + GL+K++I    + +P + ++PI+G+
Sbjct: 414 VTAPNSNNTSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGS 473

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           L R++ F +++TE+    TP LVKP+       P D +   +  + +    +        
Sbjct: 474 LARSTSFQQDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPA 532

Query: 457 ASEVEGQN 464
           +       
Sbjct: 533 SQPTAVAA 540


>gi|329847253|ref|ZP_08262281.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328842316|gb|EGF91885.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 535

 Score =  297 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 147/538 (27%), Positives = 239/538 (44%), Gaps = 77/538 (14%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEA--------NAAVINISDVEIGKGKKISIGLN 55
            +          L +   + A      +            +   +     + + + +   
Sbjct: 8   SRALLPATALAGLMTLLATGAHATGEPKPYNSLKSGGGGGMAVQTQTSQARVQVLRLPKG 67

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
           +  ++ +P D  DV VS+P  AD V+ +PR +++ G   GQ++ I     G+Q+LNL I 
Sbjct: 68  RSAVVDLPTDAADVFVSNPAVADAVLRTPRRIFVLGVEGGQSDAIFFDAQGRQILNLSIR 127

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           +E     L  T+ R    S + V+ ++  VVL G+ +    + +   L+ +++++     
Sbjct: 128 VEAATDELTDTVHRLFPTSKVEVQSLNGRVVLSGLAQNNAQADQIARLAASYVTK----- 182

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                 + V+NL++IAG+DQVTLKV + EV+R  +KQ+G    I  ++   S S+     
Sbjct: 183 -----PEDVINLMSIAGKDQVTLKVRVIEVQRSAIKQLGLSSDIVYNNGSQSYSYGRGNT 237

Query: 236 GKFVS------------------------------------------------EGGDFSV 247
                                                                     + 
Sbjct: 238 YGTNGTSYGGRGLCYGQNNVVTNNFTDSNSVTDQTAVTLEDTPVVNRTLTATIGSAVNTT 297

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              L   S  T L A ER   IRTLAEP LTA+SG++A F +GG+          G  +V
Sbjct: 298 WRTLTGSSNATCLQAFERVGLIRTLAEPNLTAVSGEAAKFLAGGEFPVPVAEDDAGRITV 357

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------GVNAGDMPSYRVRKADTTVE 361
               +GV L FTP VLS GRI ++I TEVSE           +   +P   VR+A+TTVE
Sbjct: 358 EFKPFGVGLGFTPVVLSEGRISMKISTEVSEITNVGAFTSNGSNLTIPGLSVRRAETTVE 417

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SGG++++AGLL+   +Q  + +P ++ +PILG+LFR+  F  E+TE+ +  TP++V P
Sbjct: 418 MQSGGSLMIAGLLQSKYKQSIDSLPGMTSLPILGSLFRSRDFLNEDTELVVMVTPYIVDP 477

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNK-IYGPKEASEVEGQNYKGAI----GFIYK 474
           V    L  P D+    DD    F  R+NK + G   A+ V      G      G++ +
Sbjct: 478 VHPDQLQTPADNLEFADDMSTVFMGRLNKVVDGDAVAAGVPASGPTGPYVAPIGYVIE 535


>gi|87199534|ref|YP_496791.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135215|gb|ABD25957.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 517

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 133/476 (27%), Positives = 209/476 (43%), Gaps = 54/476 (11%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           NA        E      + + +NK  ++     +   LV +   ADV+  + R++Y+ GK
Sbjct: 24  NATRAQGITAENLHAGTLEVPVNKSQVVSTDRTIAKALVGNDDIADVLPVTTRSIYVLGK 83

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
            +G  ++ L    G+ +  +D+ +  D+  L   L+ F+ +  I   + +D +VL G+V 
Sbjct: 84  KMGTTSLTLYDATGRVLSIMDVAVGPDVEGLRSQLKTFVPNDKIDARLSNDAIVLSGLVN 143

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                 RAV+L+ T+               KV+NL+++    QV L+V  AEV R     
Sbjct: 144 DPGAIDRAVQLARTYAG------------DKVVNLISLGSSQQVMLEVKFAEVNRTAGFD 191

Query: 213 IGFQHSITGSSS------------GPSKSFAADFGGKFVSEG----------------GD 244
           +G     +  +             G   + + + GG   S                  G 
Sbjct: 192 VGVSGFASKGTFESAIGKGAQLVPGADVTVSGNSGGVSTSTTIPGASILKLSSITGSFGI 251

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F     +D    + VL+ALE     +TLA+PTL A+SG+ ASF +GG+     V S T  
Sbjct: 252 FRKSFSIDGLGIDAVLNALETKGMAKTLAQPTLLALSGERASFLAGGEFPVPVVQSGTTG 311

Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYR 352
           T        +V    +GV L FTPTVL    I L ++ EVS         V +  +P  R
Sbjct: 312 TGNGNGGAITVEFKPFGVSLGFTPTVLGDKTINLLVEPEVSAIDPTASLTVGSITIPGLR 371

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A TT+EL  G +  +AGLL+ D +   + +PLL  +PI+G+LFR+S F++ ETE+ I
Sbjct: 372 TRRASTTLELRDGESFAIAGLLQKDFKTSVQQLPLLGSLPIIGSLFRSSAFSKGETELLI 431

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
             TP LV P+    +  P D  +    A   F       +G K A           
Sbjct: 432 VVTPRLVSPIKPEQVRLPTDAVTDPSAASTIFLG--EPSFGKKLAPTKPQDGSAAP 485


>gi|153006805|ref|YP_001381130.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030378|gb|ABS28146.1| type II and III secretion system protein [Anaeromyxobacter sp.
           Fw109-5]
          Length = 490

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 128/503 (25%), Positives = 215/503 (42%), Gaps = 55/503 (10%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
                   L +   +       ++A A      D E+G  +++S+   +  +L +   + 
Sbjct: 2   IPHRARALLVTLLVAAGPAVAQEQAQATPALRIDREMGAAREMSLEAGQNRLLIISEQIA 61

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V++P  AD+ V +P  + L  K VG  ++ L   D + +  + + + R++  L   +
Sbjct: 62  RIAVANPDVADLKVVTPTQVLLTAKGVGTTDLTLWNRDNQPL-VIALQVGRNLEALRTQV 120

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           ++     N+++    D VVL G V  ++  +R  E++                ++KV NL
Sbjct: 121 KQLFPGENVKITASGDLVVLSGEVTDVRLPERVAEVAR-------------LHAEKVANL 167

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGK 237
           + ++G  QV L+V  AEV R  L+++G                 S+      F       
Sbjct: 168 IQVSGVQQVQLQVRFAEVARGGLRELGVNLFHKSDDFRTVGGLFSNRTLPGEFLNTNQNP 227

Query: 238 FVSEGGDFSVKGVL---------------------DRFSFETVLHALERATAIRTLAEPT 276
            +   G   + G                       D F F  +L  LE+    ++LAEPT
Sbjct: 228 SIPGTGPRGLAGNGFPPDVPAPAFQNAFSVFLSRMDDFPFSVMLSLLEQNNLAKSLAEPT 287

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L A+SGQ A F +GG+       SS G TSV    +G+ L FTPTV+    I L ++TEV
Sbjct: 288 LVALSGQGARFLAGGELPIPLA-SSFGQTSVEWKRFGIQLEFTPTVIGD-AIHLTMKTEV 345

Query: 337 SEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           S+        +    +P    R+++T++ L  G +  +AGL+ D I+     +P +  IP
Sbjct: 346 SDIDPSLAVTIAGTSVPGLTSRQSETSIRLADGQSFAIAGLVSDRIRSQVAKVPFIGSIP 405

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNK 450
           ILGALFR+  F R+E+E+ +  T  LVKPVA  +L   P +   +   D   +      K
Sbjct: 406 ILGALFRSQAFQRDESELIVVVTAHLVKPVAPHELPPLPTEYEMNDPGDLPFYLLGSQGK 465

Query: 451 IY--GPKEASEVEGQNYKGAIGF 471
                 K       +   G  GF
Sbjct: 466 SAQIAEKRQPASPERGPSGQSGF 488


>gi|167566934|ref|ZP_02359850.1| outer membrane protein [Burkholderia oklahomensis EO147]
          Length = 550

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 124/429 (28%), Positives = 216/429 (50%), Gaps = 22/429 (5%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 92  GEMREATSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGLSVGTTNMIV 151

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V   Q +Q+A
Sbjct: 152 QGRSGAC-QIIDVAVGADAGGLQTSLRQLMPAERDIRVSTAADTIVLAGNVSDAQAAQQA 210

Query: 161 VELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           V +++ +  ++     A + +      V+N+L +    QV L+V +AEV + ++ Q+G  
Sbjct: 211 VAIAKAYSDRTNVGPGAGAGAGGPRGGVLNMLTVTSPQQVLLEVKVAEVSKTLINQMGSA 270

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            +I G     +    +          G+       ++  F+  L A      ++ LAEP 
Sbjct: 271 INIQGGFGSWTGMLVSSLLAGV----GNGIAASKSNKLPFKAALDAQNTDQPVKILAEPR 326

Query: 277 LTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           L  ISGQ A+F +GG+    + ++  + T   ++   ++GV L FTPTVLS GRI L++ 
Sbjct: 327 LVTISGQEATFLAGGKIFIPVPQSSGTGTTTITLQEEEFGVGLKFTPTVLSNGRISLKVA 386

Query: 334 TEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            EVSE                  +P    R+A TTV++  G T  + GL+KD+ Q     
Sbjct: 387 PEVSELSPTGVTLSATNVSGVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLRA 446

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +P + +IP+LGALFR++ F ++ TE+    TP LVKP+   D+  P D ++  ++   + 
Sbjct: 447 LPGIGEIPVLGALFRSTSFQQDRTELVFIITPHLVKPLETADVPLPTDSFTKPNEVDVYA 506

Query: 445 FNRVNKIYG 453
              +    G
Sbjct: 507 TGNMEGRGG 515


>gi|17545374|ref|NP_518776.1| outer membrane channel protein [Ralstonia solanacearum GMI1000]
 gi|17427666|emb|CAD14185.1| probable pilus assembly protein, secretin cpac [Ralstonia
           solanacearum GMI1000]
          Length = 634

 Score =  296 bits (757), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 115/496 (23%), Positives = 222/496 (44%), Gaps = 53/496 (10%)

Query: 17  FSSNPSVAKLPPIKEANAAVINIS-----DVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
            ++N  +        A+ A  N          +    ++++ + K  ++Q+   V+   V
Sbjct: 60  MAANGPIQLTIGSARADTARENTVKGPNCTGPMRDHSEVTVPVGKSTMVQLTEPVRSRTV 119

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +P     ++ SP+T+YL G++VG  N+I+ G  G     +D+ +  D   L+ TL   +
Sbjct: 120 GNPNIVQAMLVSPQTLYLLGQDVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQATLHALM 178

Query: 132 ADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK-------- 182
            ++  +RV   +D++VL G V     +Q+ ++++  F+ +  R    +  +         
Sbjct: 179 PEASRVRVSAAADSLVLGGTVSDSVQAQKIIDIANAFVMRETRGPAQSGQTGTMGMQGMT 238

Query: 183 ---------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                                +++N++++    QV L+V +AEV + ++ Q+G   ++  
Sbjct: 239 AMSTGNAATASSGSGEAVRNPRIINMMSVEAPQQVMLEVKVAEVSKTLINQMGAALNL-- 296

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             +G   S+       F+S   D       ++  F+  + A +    ++ LAEP L AIS
Sbjct: 297 --NGSFGSWTFGALANFLSGAPDIFSADKANKLPFQLRVDAQKGDGLVKVLAEPNLMAIS 354

Query: 282 GQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ ASF +GG+       S    T    +    +GV L FTPTVL  GRI L++  EVSE
Sbjct: 355 GQEASFLAGGKVYIPVPQSFGTGTTTILLQEETFGVGLRFTPTVLENGRINLKVAPEVSE 414

Query: 339 PVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                             +P    R+A TT+++  G +  + GL+K ++    + IP + 
Sbjct: 415 LSPTGVAVTAPNVSGTSILPLITTRRASTTLQVHDGQSFAIGGLIKSNVTGSLKAIPGVG 474

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           ++P++GAL R++ F +++TE+    TP LVKP+   +   P D +   +  + +    + 
Sbjct: 475 ELPVIGALARSTSFQQDQTELLFVVTPHLVKPL-PANYPMPTDSFGPVNQGEVYLNGNME 533

Query: 450 KIYGPKEASEVEGQNY 465
                + A      ++
Sbjct: 534 GHPASRPAPAPTQGSF 549


>gi|309780760|ref|ZP_07675501.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
 gi|308920442|gb|EFP66098.1| type II and III secretion system protein:Transport-associated
           [Ralstonia sp. 5_7_47FAA]
          Length = 603

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 113/480 (23%), Positives = 212/480 (44%), Gaps = 40/480 (8%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
                         +A         +    ++++ + K  ++Q+P  V+   V +P    
Sbjct: 67  LTIGSPASAEANRDSAGKGPNCTGPMRSHSEVTVPVGKSTMVQLPEPVRSRTVGNPNVVQ 126

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIR 137
            ++ SP+T+Y+ G  VG  N+I+ G  G     +D+ +  D   L+ TLR+ + ++ N++
Sbjct: 127 AMLVSPQTLYVLGLEVGSTNMIVQGRSGSC-SVVDVAVGADPGGLQSTLRKLMPEARNVQ 185

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------------------GRNQYA 177
           V   +D++VL G V     +Q+ V+++  F+ +                          A
Sbjct: 186 VSAAADSLVLGGSVSDSVQAQKVVDIANAFVMRRTRGPNEGDQNATGQGGQQLHTAGPGA 245

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
              S +++N++ +    QV L+V +AEV + ++ Q+G   +  G+    S    A+    
Sbjct: 246 PLRSPRIINMMTVEAPQQVMLEVKVAEVSKTLIDQMGAAFNANGAFGSWSFGAIAN---- 301

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F+S   D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+     
Sbjct: 302 FLSGSSDIVNFSKANHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPV 361

Query: 298 VSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VN 344
              +         +    +GV L FTPTV+  GRI L++  EVSE              N
Sbjct: 362 AQGAAANGVATIVLQEETFGVGLRFTPTVMENGRINLKVSPEVSELSPTGVAVTAPNSNN 421

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P    R+A TT+++  G +  + GL+K++I    + +P + ++PI+G+L R++ F 
Sbjct: 422 TSILPLITTRRASTTLQVHDGQSFAIGGLIKNNITGSLKALPGIGELPIIGSLARSTSFQ 481

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           +++TE+    TP LVKP+       P D +   +  + +    +        +       
Sbjct: 482 QDQTELLFVVTPRLVKPL-PAQYPLPTDSFGTINRGELYLNGNMEGHVQAPASQPTAVAA 540


>gi|209546483|ref|YP_002278401.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537727|gb|ACI57661.1| type II and III secretion system protein [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 495

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 127/495 (25%), Positives = 218/495 (44%), Gaps = 35/495 (7%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           M   +R      S+   ++  S         A  A      V +GK  +++++  N  + 
Sbjct: 1   MANGKRRIARTKSLAALAAVFSACVCLGPGFAGCANAQEKSVTLGKSVQRVTLPPNATLT 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L       D+++      DVV  S +++++ GK +G  N+ + G D   +  +D+ +  D
Sbjct: 61  LNTGQAFGDLVIGSADMIDVVPLSDKSLFIRGKKIGATNISVYGDDKSLLGVIDVRVASD 120

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
            + +   +R     + + V   SD + L G+VR   + QR +++++++            
Sbjct: 121 FSEVAAAIRSAAPSARVIVANSSDRIRLTGIVRDGVELQRVMDIAQSY------------ 168

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
           S + V+N L ++   QV L+V + E  R   + +G   S  G++     + +   G    
Sbjct: 169 SDQPVLNQLRVSDSQQVMLEVRVIEASRQTGRDLGIGWSGRGNNGIGKATTSQGLGVDDN 228

Query: 236 --------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                            +  G   +    +     + V++ALE+   +R LA+P L A+S
Sbjct: 229 GSLVRTLVDPKGAATGALPFGQLIAKVLEISGGHIDVVINALEQKGLVRRLAQPNLIAMS 288

Query: 282 GQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +ASF +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE 
Sbjct: 289 GSTASFHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGLINLEIEPEVSEL 348

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +N    P +  R A TTV L  G +  LAGLL+    +  + +P L KIPILGALFR
Sbjct: 349 DPSINVNGNPGFISRAASTTVALRDGQSFALAGLLQSINAKDIQQLPGLGKIPILGALFR 408

Query: 400 NSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           ++ F ++E+++ I  TP +V+P     DL  P D     +D + F    +  +       
Sbjct: 409 STSFQKKESDLVIVVTPHIVRPARPGEDLYSPLDQTRSSNDVELFALGVLE-VDKDMLRR 467

Query: 459 EVEGQNYKGAIGFIY 473
              G+   G  G   
Sbjct: 468 FRNGEGVTGPYGHRL 482


>gi|87312292|ref|ZP_01094390.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
 gi|87284996|gb|EAQ76932.1| putative outer membrane channel for pilus assembly CpaC
           [Blastopirellula marina DSM 3645]
          Length = 534

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 123/471 (26%), Positives = 205/471 (43%), Gaps = 27/471 (5%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M S  +     ++A      +   AV N++       +++ + +N   I  +   +    
Sbjct: 1   MYSYGVACLLIAIATPAANAQDMGAVPNVNFKVDAPNQRLEMMVNSSRIFTLDEKIPKAQ 60

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V++P    +   SP  + +     G   V L   DG  +  +DI++  D   L++ L   
Sbjct: 61  VNNPDLLRLTPLSPNKIQVSALKPGVTQVNLWNEDG-TIHTIDIIVIGDGRELQLLLETE 119

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
             +S+I+V  ++ +VVL G V   +   R V ++E +               KV+N + +
Sbjct: 120 FPNSSIKVRPLASSVVLSGYVDRPEAVSRIVAMAEDYYP-------------KVINNITV 166

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----------FAADFGGKFVS 240
            G  QV LKV + EV R  L+++G   +  GS    S +            +       +
Sbjct: 167 GGVQQVMLKVKVYEVSRTKLRRLGIDWAAIGSDYFISSTAANVLTPAGVLTSGARDALGA 226

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G       +     F   L AL +    +  AEPTLT ISG+ ASF SGG+   + V+S
Sbjct: 227 TGQTVQFGVLGSSTQFFGFLDALRQNNVAKLSAEPTLTTISGRPASFLSGGEVPIQ-VAS 285

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TS+    YG  + F P VL  G + L ++ EVSEP   V     P +R+R  DT V
Sbjct: 286 GLGTTSIEYKQYGTRVDFVPIVLGNGNLKLEVRPEVSEPDYSVAINGTPGFRLRWVDTAV 345

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           E+ +G +  LAGL+++ I+    G+P L+ +P +GA FR +  +R E E+ I  TP LV 
Sbjct: 346 EMKAGQSFALAGLIQEKIETETRGLPYLADLPWVGAAFRRNTDSRNEVELLIIVTPELVG 405

Query: 421 PVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
            +   ++    P  +  +  D + +    V     P   + +      G  
Sbjct: 406 ALNPEEVPCEYPGSNTGITTDCELYGRGYVEVPACPPGGACISEPGMIGPY 456


>gi|329890996|ref|ZP_08269339.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
 gi|328846297|gb|EGF95861.1| bacterial type II and III secretion system family protein
           [Brevundimonas diminuta ATCC 11568]
          Length = 522

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 136/507 (26%), Positives = 248/507 (48%), Gaps = 70/507 (13%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
              +   A    +       + +++       + +P D +DV++S+P  A+ ++HSPR +
Sbjct: 26  AASDGARAQTRAAITAGSAPQMVNLPRGTSFAVDLPADARDVIISNPAVAEAMLHSPRRI 85

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            + G   G+ + + +   G+ +L L + ++  ++ L+ TL R    SN+R E V+D+++L
Sbjct: 86  TMIGLAGGETDAVFLDASGRTILALRVRVDAGVSALQDTLARVAPGSNVRAEAVNDSIIL 145

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+  +  +++RA +++  F+          S+ +KVMN++ +AG DQVTLKV + EV+R
Sbjct: 146 TGVAASPLEAERAAQVARAFV----------SAPEKVMNMIAVAGSDQVTLKVRVVEVQR 195

Query: 208 DILKQIGFQHSI-------------TGSSSGPSKSFAADFGGKFVSEGG----------- 243
           + +KQ+GF                   ++ G + SF     G    +             
Sbjct: 196 NAIKQLGFDTQAVIGRVGDTQWLLGNSATWGVNGSFLGGLAGGIARDTTKNFQMQVPCVG 255

Query: 244 ---------------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                        +  G       E +L A ER   +RTLAEP 
Sbjct: 256 PGWPEGAMCPVTVDGSPGDPSNWDTAKPGTGPGSDGLNKGEAMLKAFERVGLVRTLAEPN 315

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LT+++G++ASF +GG+          G  +V    YGV L F P VLS GRI L+++ EV
Sbjct: 316 LTSVNGEAASFLAGGEFPVPAGRDREGQITVEYKPYGVGLSFRPVVLSEGRISLQVKVEV 375

Query: 337 SEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE              ++  +P   VR+++ T+ELPSGG++++AGLL++  +Q  + +P 
Sbjct: 376 SELTPNGGLTIGAGTPSSITLPGLTVRRSENTIELPSGGSMMIAGLLQESTRQAIDALPG 435

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           ++ +P+LG LFR+  +   ETE+ +   P++V P +   +  P D   +  DA+  FF +
Sbjct: 436 MTNLPVLGQLFRSRDYVMGETELVVIVEPYIVNPTSPDRMQTPADGLRIAQDAQTIFFGQ 495

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIYK 474
           +N++YG    +   G  ++G +G++ +
Sbjct: 496 LNQVYGSPAPAAQPGAGWRGPVGYVIE 522


>gi|319782173|ref|YP_004141649.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317168061|gb|ADV11599.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 481

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 116/457 (25%), Positives = 195/457 (42%), Gaps = 32/457 (7%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
            A     DV      +I + +++ + +QV  ++ D++V D   AD    + RT+Y+ GK 
Sbjct: 27  DAADRFIDVSTPAVHRIFLPMSQSVTIQVSANLGDIVVGDEKIADAQPMTDRTLYVIGKG 86

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   V L   D + +  L I +  D++ +   +R+    S I V  V+  V L G V+ 
Sbjct: 87  AGTTTVNLFSTDKRSLGALQIEVGVDVSDMAQAIRQVAPKSRIEVGSVNGRVRLGGHVKD 146

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                  + +++ +                V+N + +    QV L+V + E +R+  + +
Sbjct: 147 GATLAAIMAVAQQY------------GPDAVINSVIVDDSQQVNLEVRVLEAKRNTGRDL 194

Query: 214 GFQHSITGSSSGPSKSFAADF----------------GGKFVSEGGDFSVKGVLDRFSFE 257
           G                                         +  G    + +      +
Sbjct: 195 GVSIKSRNGDGTTRTGTGVAAVDEDGVVLGPGGLLSGLLSNSAPFGALITRVIDSNIKVD 254

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            ++ ALE   A+RTLA P LT +SG+ ASF +GG+          G  S+    +GV L 
Sbjct: 255 LIIEALESKGAVRTLANPNLTTLSGEQASFNAGGEVP-IRTLDKDGEISIVYKQFGVNLL 313

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           FTP VL  G+I + +  EVS+      AGD P +  RK  T VEL  G +  + GLL   
Sbjct: 314 FTPVVLDDGKIHMNLAPEVSDLTGFTTAGD-PIFTNRKLATVVELRDGQSFAVGGLLSSK 372

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSV 436
             +L++ +P L ++P++G LFR+S   +EETE+ +  TP +V+PV     L+ P D    
Sbjct: 373 TTKLQDQVPWLGQVPVIGTLFRSSSNQKEETELVVIVTPHIVRPVKPGEQLATPFDKTRP 432

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            +D + F   ++          E  G+   G  G + 
Sbjct: 433 ANDPEFFVLGQLEVTKDMVRKYET-GEGVTGPYGHML 468


>gi|217978832|ref|YP_002362979.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
 gi|217504208|gb|ACK51617.1| type II and III secretion system protein [Methylocella silvestris
           BL2]
          Length = 530

 Score =  295 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 133/486 (27%), Positives = 213/486 (43%), Gaps = 38/486 (7%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
             L   + A +   +    E  + +++++   K    ++       +V     ADV+  S
Sbjct: 42  MGLAETQPAKSQAGSTIQYEPAQVRRVAVTRYKSRTFRMETPFSSAVVGSADIADVLPMS 101

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            R +Y+ GK VG  NV +   D K +  +D+ +  DI ++   +R       IRV   +D
Sbjct: 102 DRVIYIQGKRVGTTNVSIFDKDKKLIGVIDLEVTLDIQNIAAKVRSGTDSRGIRVSSNND 161

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            +VL G  R   D+ RAV ++++ +  +   +  +   K V+N +++A   QV L+V   
Sbjct: 162 QIVLSGEARNAVDADRAVSIAKSMV-TTADGKPPDDPGKFVINAMSVAAAQQVLLRVRFV 220

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------------------FGG 236
           EV R   + IG       + +  +     +                            GG
Sbjct: 221 EVNRIAERDIGVNWFGAANKTQTAGVNTGNGIASQVGQSLTPTPGGIPLFQTLATLVPGG 280

Query: 237 KFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +    F V  + L   + + ++ ALE+    R LAEP L A+SG +ASF +GG++  
Sbjct: 281 LASTGSLPFGVGLIKLAGGNVDLLISALEKKGQARRLAEPDLIALSGDTASFLAGGEYPV 340

Query: 296 KTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDM 348
            +V SS+G T V     + YGV L F PTVL+ G I LR+   VSE     V+      +
Sbjct: 341 PSVQSSSGTTPVITTQYYPYGVQLTFIPTVLANGIINLRLNPSVSELDYKNVVVTAGFAI 400

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R+A TT+EL  G +  +AGLL+ D       IP L  +P+LGALF +  + + ET
Sbjct: 401 PSITKREARTTIELRDGQSFAIAGLLQSDSTHDVNQIPWLGSVPVLGALFSSKSYQQNET 460

Query: 409 EIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           ++ +  TP LV P A    ++ P D     +D   F   R        +     G    G
Sbjct: 461 DLVVIVTPHLVAPAAPGQVVATPFDKTLPANDVDFFVMGRPEVRKQYTD-YVTSGGGLTG 519

Query: 468 AIGFIY 473
             G I 
Sbjct: 520 PYGDIM 525


>gi|295690798|ref|YP_003594491.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
 gi|295432701|gb|ADG11873.1| type II and III secretion system protein [Caulobacter segnis ATCC
           21756]
          Length = 564

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 150/521 (28%), Positives = 231/521 (44%), Gaps = 90/521 (17%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
           N  V  +          + +   K  I+++P DV+D+LV+ PT AD V+   R +Y+ G 
Sbjct: 55  NGQVARVVLTADQTAATLELAKGKSAIVELPADVRDLLVTSPTVADAVLRDRRRVYIVGL 114

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G  +       G+++L+L I + + +  L  TL R + D+ I V  + D+VVL G VR
Sbjct: 115 AEGVTDAAFFDDAGRRILSLSIKVSQPVDQLADTLSRVLPDAKIEVRPIRDSVVLSGTVR 174

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK- 211
           +   S  A  ++  ++              KV+N+L+IAG+DQV L+V I EVRR+++K 
Sbjct: 175 SPAQSDAAARIAAQYVGG----------PDKVLNMLSIAGKDQVMLQVRIVEVRRNVIKQ 224

Query: 212 ----------QIGFQHSITGSSSGPSKSFAADFGG------------------------- 236
                     Q+G      G S   S +     G                          
Sbjct: 225 LGVDLNAVLGQLGQSQYSFGLSPTYSVNGNLLGGVTGGYKLDTTKQPTLQIPCGNGVGDA 284

Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                                                 G       + ++ A ER   +R
Sbjct: 285 KCLAVVHGKVYHTGVIDPTTGREIVVGNGDTATISDTAGSTGVNQAKGMIQAFERVGLVR 344

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLAEP LTA+SG++  F  GG+    T S +TG  ++    YGV L +TP V+S GRI L
Sbjct: 345 TLAEPNLTAVSGEAGHFLVGGEFPVPTGSDATGKIAIEFKPYGVGLGYTPVVMSGGRISL 404

Query: 331 RIQTEVSEPVI-----------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +I TEVSE                          +P   VR+A+TTVELPSGG+ ++AGL
Sbjct: 405 KISTEVSELSSLGAFTISNSTTSGNTTTTSAPLTVPGLSVRRAETTVELPSGGSFMIAGL 464

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+   +Q  + +P ++ +PILG+LFR+  F   ETE+ I  TP++V P   RDL  P D 
Sbjct: 465 LQQTTKQAIDALPGMTNMPILGSLFRSRDFLNGETELVIIVTPYIVDPAKPRDLQTPADG 524

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
             +  D       R+N++          G+ Y+G +G++ +
Sbjct: 525 LRMAGDMSTVLLGRLNQVVKAPP-GANAGRAYQGPVGYVIE 564


>gi|13475294|ref|NP_106858.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
 gi|14026045|dbj|BAB52644.1| type II secretion system protein [Mesorhizobium loti MAFF303099]
          Length = 432

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 129/451 (28%), Positives = 205/451 (45%), Gaps = 26/451 (5%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
             +      +   I     +S  L K   + +P     + V+DPT AD    S  T+++F
Sbjct: 1   MQDQGAPRAASNSIDGTLNLSSSLGK--TVHLPAPATTIFVADPTIADYQAASNTTIFVF 58

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G+ ++  +   G+ +  L I++ + I  L   L   + DS+I+V       +L G 
Sbjct: 59  GKKSGRTSLFALDDKGEALAALRIVVTQPIEELRAMLMDQVGDSSIQVSYTPRGAILSGT 118

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
               + +  A  ++E +L              +V+N + +AG  QV L V +AEV R  +
Sbjct: 119 APNAEVADTAKRVTEQYLGDGA----------QVVNNIKVAGSLQVNLSVRVAEVSRSAM 168

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--SFETVLHALERATA 268
           K +G   S  G          +  G    +  G  +     +    +   VL AL +   
Sbjct: 169 KALGVNLSAFGQIDNFRVGLLSGGGTGSGAAQGGGTAGIGFNNGAVNIGAVLDALAKEHI 228

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LAEP LTA+SG++ASF +GG+     V       SV    +GV L F PTVL+  RI
Sbjct: 229 ASVLAEPNLTAMSGETASFLAGGEFPIP-VLQENKQVSVEFRHFGVSLEFVPTVLNNNRI 287

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            + ++ EVSE      + +N   +P+   R+ADT VEL SG +  + GL++ ++      
Sbjct: 288 NIHVKPEVSELSSQGAVQINGISVPAVSTRRADTVVELASGQSFAIGGLIRRNVNNNVSA 347

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSVEDDAKAF 443
            P L ++PILGALFR+S F +EE+E+ I  TP++VKP  +   +S P D  +   D    
Sbjct: 348 FPWLGEMPILGALFRSSSFQKEESELIILVTPYIVKPGSSPNQMSAPTDRMAPALDDP-- 405

Query: 444 FFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
                +   G   A        +G  GFI +
Sbjct: 406 ---PADPPRGRAAARTGAPGAKRGR-GFIIQ 432


>gi|167924333|ref|ZP_02511424.1| Putative phospholipid-binding domain family protein [Burkholderia
           pseudomallei BCC215]
          Length = 438

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 122/428 (28%), Positives = 218/428 (50%), Gaps = 20/428 (4%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+ G
Sbjct: 1   MRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIVQG 60

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+AV 
Sbjct: 61  KSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQAVA 119

Query: 163 LSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +I 
Sbjct: 120 IAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVNIQ 179

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G     + +         ++  G        ++      + A      ++ LAEP L  I
Sbjct: 180 GGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLVTI 235

Query: 281 SGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SGQ A+F +GG+       SS   T   ++   ++GV L FTPTVLS GRI L++  EVS
Sbjct: 236 SGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGLKFTPTVLSNGRISLKVAPEVS 295

Query: 338 EPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           E              N   +P    R+A TTV++  G T  + GL+KD+ Q   + +P +
Sbjct: 296 ELSPTGVTLSAANVGNVSILPLITTRRASTTVQMGDGETFAIGGLIKDNAQGTLKALPGI 355

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
            ++P+LGALFR++ F ++ TE+    TP LV+P+   D+  P D ++  ++A  +    +
Sbjct: 356 GELPVLGALFRSTSFQQDRTELVFIITPHLVQPLETADVPLPTDSFTKPNEADVYATGNM 415

Query: 449 NKIYGPKE 456
               G ++
Sbjct: 416 EGRGGLRQ 423


>gi|307726375|ref|YP_003909588.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307586900|gb|ADN60297.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 616

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 117/466 (25%), Positives = 209/466 (44%), Gaps = 27/466 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S N +  +     ++ AA            + + + + K  ++     V++  + +P
Sbjct: 56  MTISMNAAPPQPASAMQSAAARGPACTRTQSDQRTVVVPVGKSTLMPTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174

Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
            NIRV  V+  +VL G V + Q + +A E+++ +   +          N  A   +  V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPGASGGANGNGTAAGKTATVL 234

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N++++    QV L+V +AEV + +L Q+G   +I G     S +  +       S     
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----I 290

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                 +   F   +        ++ LAEP L  +SGQ A+F +GG+       S+    
Sbjct: 291 VDVNKANNRPFNVAIDGQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350

Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353
           S       ++GV L FTPTVL+ GRI L++  EVSE                  +P    
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A TTV++  G T  + GL+K++     + IP + ++P+LGALFR++ + ++ TE+   
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKNNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFI 470

Query: 414 ATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            TP LVKP+    +L  P D     ++A  +    +          
Sbjct: 471 ITPHLVKPLQTAANLPLPTDRLKTPNEADVYLMGNMEGRDPAGSTK 516


>gi|167584957|ref|ZP_02377345.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 536

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 119/435 (27%), Positives = 212/435 (48%), Gaps = 19/435 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             + +   +S+ L K +++ +P  V++  + +P  A   + SP+T+Y+ G +VG  N+I+
Sbjct: 81  GAVRESTSVSVPLGKSMLVPMPEPVRNRTIGNPAVAQATMVSPQTLYILGLSVGTTNMIV 140

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +L + +    +I V   +DT+VL G V + Q +Q+A
Sbjct: 141 QGKSGACR-IIDVAVGADAGGLQASLGQLMPGERDIHVSTAADTIVLAGNVSSAQAAQQA 199

Query: 161 VELSETFLSQSGRNQYANSSSKK-VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             +++ + +  G     ++     V+N+L +    QV L+V +AEV + ++ Q+G   +I
Sbjct: 200 AAIAKAYANAGGGGANGDNKGGGTVLNMLTVTAPQQVMLEVKVAEVSKTLINQLGSAFNI 259

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G     S +  ++      S      V    +   F   + A      ++ LAEP L  
Sbjct: 260 QGGFGSWSGALVSNLLAGVASG----IVANKANNRPFSVAVDAQNTDNLVKILAEPNLVT 315

Query: 280 ISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           ISGQ A+F +GG+       S+TG     ++   ++GV L F PTVLS GRI L++  EV
Sbjct: 316 ISGQEATFLAGGKIFIPVPQSNTGGGTTITLQEEEFGVALRFLPTVLSNGRISLKVAPEV 375

Query: 337 SEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE                  +P    R+A TTV++  G +  + GL+KD+     + +P 
Sbjct: 376 SELSQTGVTLTATNVAGASILPLITTRRASTTVQMADGESFAIGGLIKDNATGSLKAVPG 435

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           + +IP+LGAL R++ F ++ TE+    TP LVKP+   D+  P D ++  ++   F    
Sbjct: 436 IGEIPVLGALARSTSFQQDRTELIFIITPHLVKPLQTADVPLPTDSFTRTNEVDVFATGN 495

Query: 448 VNKIYGPKEASEVEG 462
           +    G ++      
Sbjct: 496 MEGRGGLRKHGRAPA 510


>gi|294139870|ref|YP_003555848.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
 gi|293326339|dbj|BAJ01070.1| Flp pilus assembly protein CpaC [Shewanella violacea DSS12]
          Length = 442

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 129/461 (27%), Positives = 201/461 (43%), Gaps = 56/461 (12%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            +++ LNK  ++Q+P   + + +S  T AD    +   + +FGK  G  ++ ++  D   
Sbjct: 2   TLAVTLNKAELVQLPKTAKSIFISSNTIADYQALTNTKIMVFGKRAGTTSLYVLDADENV 61

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +  + +  ++  L   +R    D+ +  E ++  + L G V T   +++ V LSE ++
Sbjct: 62  IYSASVKVSHNVTELNGLIRSEFPDALVSAESIAGKLFLKGRVPTPTMAEKIVRLSEGYV 121

Query: 169 SQSGRNQY----------------------------ANSSSKKVMNLLNIAGEDQVTLKV 200
           SQ   ++                                S  +++N L I    QV L+V
Sbjct: 122 SQPQSSKGKQQGGKSSGQAKGSKQQGQNGGGQESQSGTGSKGELINQLEITMSTQVNLRV 181

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            IAEV R++  ++G +    G                     G F+    L       ++
Sbjct: 182 RIAEVSRNVSNKLGIKWGSQGF------------------GTGKFAFSDGLGFSKLSVMV 223

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL     I  LAEP LTAISG+ ASF  GG+     +   T   S+    +GV L F P
Sbjct: 224 DALATNGMITVLAEPNLTAISGEKASFLVGGEVPIPLIYGDT--VSIEYKPFGVRLDFKP 281

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVLSP RI L+I+ EVS      N        P +  RKA TT+EL SG +  L GLL+ 
Sbjct: 282 TVLSPNRISLQIEPEVSTISQSTNVVMGDSSFPVFMTRKASTTIELASGQSFALGGLLQS 341

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
              +  + +P +  IPILGALFR++ F REETE+ I AT +LV+P     L  P D    
Sbjct: 342 TDIEQMQKMPWIGDIPILGALFRSNEFKREETELIIIATVYLVEPTRGDSLPLPTDGLIP 401

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK----GAIGFIY 473
             D +       + +    +       N +    G  GF Y
Sbjct: 402 MSDVERLLAWPRSGVNPSTDTQVNPNDNRQLRLLGDNGFYY 442


>gi|295700370|ref|YP_003608263.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
 gi|295439583|gb|ADG18752.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1002]
          Length = 634

 Score =  293 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 113/473 (23%), Positives = 210/473 (44%), Gaps = 36/473 (7%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P+ A    +             EI     +S+ + K I++ +    ++  + +P  A  
Sbjct: 74  MPTGATSGRMVAPAQLTGPNCTGEIRDESNVSVAVGKSILVPLVEPARNRTLGNPVVAQA 133

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRV 138
            + S RT+Y+ G +VG  N+I+ G  G     +D+ +  D   L+ TL + + +   IRV
Sbjct: 134 TLVSQRTLYVVGMSVGTTNMIVQGRSGAC-QIIDVSVGVDAEGLQRTLAQLLPNERGIRV 192

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---------------- 182
              +  +VL G V + Q +Q+A+ ++  +       Q  +S++                 
Sbjct: 193 SSAAGNLVLAGRVSSGQAAQQAMSIAGAYAGAQPTQQDQSSTASFGNGGSISQQSSSVSK 252

Query: 183 --KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             +V+N++ +    QV L+V +AEV + +L Q+G   +I G     + +  +       S
Sbjct: 253 GSEVINMMTVDSPQQVMLEVKVAEVSKTLLNQLGAAVNIQGGFGSWTGALVSSLLAGVSS 312

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                      +   F   + A +  +  + LAEP L  +SGQ ASF +GG+       S
Sbjct: 313 G----VAVSKANNRPFNIAVDAQKSDSLGKILAEPNLVTLSGQEASFLAGGRVFIPVPQS 368

Query: 301 STG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---------VNAGDM 348
           +       ++   ++GV L FTPTVL+  R+ L++  EVSE              +   +
Sbjct: 369 NGTGGSTITLQEEEFGVGLKFTPTVLAGSRVNLKVAPEVSELSPTGVTVQATGTSSTAIL 428

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+A TTV++  G +  + GL++++I    + +P + ++P+LGALFR++ F ++ T
Sbjct: 429 PLITTRRASTTVQMNDGESFAIGGLIQNNITGALKALPGIGEVPVLGALFRSTSFQQDRT 488

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           E+    T  LVKP+   D   P D ++   D   +    +         +  +
Sbjct: 489 ELIFIVTVHLVKPLPPGDYPLPTDSFTGVSDGTVYATGNMEGRRPTASPNAPQ 541


>gi|332188377|ref|ZP_08390102.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
 gi|332011606|gb|EGI53686.1| bacterial type II and III secretion system family protein
           [Sphingomonas sp. S17]
          Length = 511

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 131/496 (26%), Positives = 212/496 (42%), Gaps = 39/496 (7%)

Query: 1   MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
           M    R+  T       +      +   P       A    S         + I   +  
Sbjct: 1   MTMTMRSILTGAGRGSVVALMLAPLLLAPAPAHGAPAGPGDSADAGSGAGVLEINTGRAR 60

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++ +P  + D+ V+D T ADV V SP  +Y+FGK  G+  +      G  +    + I  
Sbjct: 61  LITLPRPMTDLFVADDTIADVQVRSPTQLYIFGKKPGETTISATARGGAVVYATTVRIGN 120

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           ++  +   LR  + ++ I    ++  ++L G V    D   A  L + ++ +        
Sbjct: 121 NLDSIGRMLRLAMPEAQIASTPMNGLILLTGTVAAPDDVAEAERLVQAYVGKDT------ 174

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAAD 233
               KV++ L  A   QV L+V IAEV R+ +K IG        + +G   G        
Sbjct: 175 ----KVISRLKTATPLQVNLQVRIAEVNRNFVKSIGVNLLNRDRNSSGFVFGIGSGRNPG 230

Query: 234 FGGKFVSEGG----------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                 +  G                   + G +        +   E    + TLA P L
Sbjct: 231 TITDLTNAAGTTIGTQYGFNQGPLRTTLGLGGRVLGMDLLGAMDLGETLGQVSTLANPNL 290

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           TA+SG++A+F +GG+       +  GA SV    YGV L +TPTVLS GRI LR++ EVS
Sbjct: 291 TALSGETATFLAGGEIPIPLS-TGLGAVSVEYKQYGVSLSYTPTVLSDGRISLRVRPEVS 349

Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +      + ++   +P+   R+A+TT+EL SG ++++ GLL +      E  P L  +P+
Sbjct: 350 QITSVGAVTISGTTIPALTTRRAETTLELGSGQSMMIGGLLSNSRDNSIEKTPWLGDLPL 409

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +GALFR++ F R ETE+ I  TP+LVKPV +  D++ P D     +DA+     R+    
Sbjct: 410 IGALFRSNAFKRNETELVIIITPYLVKPVNSPSDIALPTDGQRSPNDAERVLLGRMAAGS 469

Query: 453 GPKEASEVEGQNYKGA 468
                        +G 
Sbjct: 470 SEPRPVPTMATPVQGR 485


>gi|78186537|ref|YP_374580.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166439|gb|ABB23537.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 461

 Score =  292 bits (747), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 109/457 (23%), Positives = 191/457 (41%), Gaps = 51/457 (11%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              +       + + +  + ++   ++ V V +P  AD ++ +   +YL GK  G  N+I
Sbjct: 14  FSGLAAPSTYLVPVGESRVYRLEQPIKRVAVGNPEVADYIMLNSSELYLLGKKTGATNLI 73

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQR 159
           L    G     L + + R++  ++  L+  +    +I++      +VL G       ++ 
Sbjct: 74  LWDQKGNCTSTL-LQVSRNVYPIKKLLKTALPKETDIQIFASGPALVLAGSASNSLAAES 132

Query: 160 AVELSETFLSQ-------------------------------------SGRNQYANSSSK 182
           A  L + +L                                       +     A +   
Sbjct: 133 AYRLVKAYLGGTVPGVNPESSLSNSGSGSAAPASMSGTQNSSYAAPVIATSASTAPAGMS 192

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++NLL +    QV L+V IAEV +  ++ +G   +          +        FVS  
Sbjct: 193 GLVNLLTVRDTQQVRLEVRIAEVSKSYIETLGLGWTQ------GVGNTQGSLMTGFVSNA 246

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +            + A  +   I+ LAEPT+ A+SGQ   F  GG+       S+ 
Sbjct: 247 TLNLLLQTKSNPGNRLDMDAERKEGLIKILAEPTMVAMSGQEGYFLVGGKVYTP-TLSTN 305

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADT 358
           GA       YGV L FTP VL  GRI L++  EVSEP    V    +G +P ++   A +
Sbjct: 306 GAVDYVERTYGVGLRFTPVVLDSGRISLKVAPEVSEPLKEAVTAGTSGPLPGFKTSFASS 365

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TV++  G  +V+ GLL+D++ ++   +PLL+ IPILG+LFR++  + E TE+ +   P L
Sbjct: 366 TVQMREGENLVIGGLLRDNLTEVVRAVPLLADIPILGSLFRHTEKSSETTELMVIIRPTL 425

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           +K    +    P D +     ++ F   ++    G K
Sbjct: 426 IKASD-KAPELPTDRFVPPSSSELFIEGKLQSSRGSK 461


>gi|254418362|ref|ZP_05032086.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
 gi|196184539|gb|EDX79515.1| Putative phospholipid-binding domain family [Brevundimonas sp.
           BAL3]
          Length = 517

 Score =  292 bits (747), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 141/533 (26%), Positives = 257/533 (48%), Gaps = 75/533 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR       T+    +  +    A +  + +  AAV   +  ++     I++       +
Sbjct: 1   MRKT-PVRKTVALACVLLAGLGAAPVAGLAQTRAAVSMGAAPQL-----INLPRGTSFAV 54

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +P D +DV+V++P  A+ ++HSPR + + G   G+ + + +   G+ +L+L + ++   
Sbjct: 55  DLPADARDVIVANPQVAEAMLHSPRRITVIGIAPGETDAVFLDAAGRTILSLRVRVDAGT 114

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           + L+ TL R +  S IR E V+D+V+L G+  +   + +A +++  F+          S+
Sbjct: 115 SALQDTLSRLVPGSQIRAEAVNDSVILSGVADSPAQAVQAAQVARAFV----------SA 164

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
            +KV+N+++IAG DQVTLKV + EV+R  +KQ+GF  S      G ++    +     V+
Sbjct: 165 PEKVLNMISIAGSDQVTLKVRVVEVQRSAIKQLGFDTSAVVGQLGSTQWLLGNSATWGVN 224

Query: 241 EGGDFSVKGVLDRFSF-------------------------------------------- 256
            G    +   L R +                                             
Sbjct: 225 GGLIGGISAGLSRDTTKNYQMQRPCVGPGWTPGALCPVTVRGPDDASNWDTAQPGTGPGS 284

Query: 257 ------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    + A ER   +RTLAEP LT+++G++ASF +GG+    +     G  +V   
Sbjct: 285 NDLNKGSATVKAFERVGLLRTLAEPNLTSVNGEAASFLAGGEFPIPSGRDRDGNITVVYK 344

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVE 361
            YGV L F P VL  GRI L+++ EVSE              ++  +P   VR+++ TVE
Sbjct: 345 PYGVALSFRPVVLDAGRISLQVKVEVSELTSQGGLTIGAGTTSSVSLPGLSVRRSENTVE 404

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L SGG++++AGLL+++ +Q  + +P ++ +P+LG LFR+  +   ETE+ +   P++V P
Sbjct: 405 LSSGGSMMIAGLLQENTRQAIDALPGMTNLPVLGQLFRSRDYLNGETELVVIVEPYIVSP 464

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            +   +  P D   +  D++   F ++N+IYG    +   G  ++GA G++ +
Sbjct: 465 TSPDRMQTPADGLRIASDSQTILFGQLNQIYGSPSPTAQSGAVWQGAAGYVIE 517


>gi|319783874|ref|YP_004143350.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169762|gb|ADV13300.1| type II and III secretion system protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 482

 Score =  291 bits (745), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/434 (28%), Positives = 203/434 (46%), Gaps = 18/434 (4%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++  V   K   I +   K   +        +++ DP  A+V   + ++ Y+ G N+G  
Sbjct: 43  DVVYVSSTKNASIKVAKGKPKTIITSAAFYQIVIGDPEIANVNPLTDKSFYVLGNNLGTT 102

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            + L     + +  +DI +  D   L  T+R  + D+ I+V   +  VVL G       +
Sbjct: 103 GIALFDEKKQLVGTVDIEVTLDTDQLASTIRASVPDARIKVGSANGRVVLSGEADDAVAA 162

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++A +++  F             +++V+N +NI+   QV L V   E+ R   + +G ++
Sbjct: 163 EKANKIATRFSG-----------AEEVINSVNISSSQQVQLNVRFVEINRQAGQDLGAKY 211

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +   +     +  + D G    +  G+   + + +  S +  + ALE     R LAEP L
Sbjct: 212 AANFAYGLGGRDVSIDPGTVPTAGTGEIIGRLLSNGVSIDIAIKALEERGLARRLAEPNL 271

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A SGQ+ASF +GG+     VS   G  SV+   YGV L FTPTVL  G + L I  EVS
Sbjct: 272 IARSGQTASFLAGGEFPIP-VSEDNGKISVSYKKYGVSLDFTPTVLKDGLVSLDIAPEVS 330

Query: 338 EPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                    +    +P + VR+A T+V+L +G + ++AGLL+         IP L K+P+
Sbjct: 331 SIDASASYNIGTISVPGFIVRRARTSVDLKNGQSFMIAGLLQSQNDITTSRIPGLGKMPV 390

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           LGALF +  + R ET++ I  TP+LVKPV   + L  P D      +A  +F N   ++ 
Sbjct: 391 LGALFSSKSYQRRETDLVIIVTPYLVKPVDPSKKLVEPTDGTQPASNAD-YFLNNTEEVK 449

Query: 453 GPKEASEVEGQNYK 466
                  V   + +
Sbjct: 450 DSDAGRTVALADGR 463


>gi|288956969|ref|YP_003447310.1| pilus assembly protein [Azospirillum sp. B510]
 gi|288909277|dbj|BAI70766.1| pilus assembly protein [Azospirillum sp. B510]
          Length = 491

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 117/441 (26%), Positives = 201/441 (45%), Gaps = 32/441 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +    ++++     +V V+DP  ADV   S   +++ G+  G+  V  +    + +
Sbjct: 66  MTLDVGTSEMVRLSAPATNVYVADPEIADVQAASGTVIFVLGRKPGRTTVYALTEGDRVV 125

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L+ DI +   +A L   +        + V    + +++ G V T   ++  +EL   F  
Sbjct: 126 LHRDIRVIHSLAPLREQITARFPGMPVTVTSAPNRLIVTGEVPTPAIAESVMELVNGFAR 185

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------SITGS 222
                        KV+N + + G  QVTL+V +AEV R + +++GF             +
Sbjct: 186 ----------PDDKVVNQMAVTGPVQVTLRVQVAEVARSVTQELGFNWEGAVKIGDFAIA 235

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLT 278
                    A  G    S  G  S+ G+L     + +   ++ A++    +  LA+P L 
Sbjct: 236 PGFGRDFLNATSGAIQRSATGASSLAGILKSSNGKANIAGIVDAMQDQGLVTLLAQPNLV 295

Query: 279 AISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           A+SG+ A F +GG+         S +    V    YGV L+F PTVL+P RI L ++ EV
Sbjct: 296 AMSGKPAMFLAGGEFPIPVSAGDSGSNKIQVEFKQYGVALNFVPTVLAPDRIALTVRPEV 355

Query: 337 SEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           SE      + VN   +P+  VR+ +T+VEL SG +  + GLL++  +   +  P L  +P
Sbjct: 356 SELTDVGAVTVNGLTIPALTVRRVETSVELGSGESFAIGGLLQNSNRSSLKKFPGLGDLP 415

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LG LFR+ RF   ETE+ +  TP++V P+       P        + +     R   + 
Sbjct: 416 VLGELFRSRRFINNETELVVIVTPYVVNPIQRGPGVIPQRGTKPNREVEELLRRRQQALG 475

Query: 453 GPKEASEVEGQNYKGAIGFIY 473
            P+ A      +Y G  GFIY
Sbjct: 476 LPEPAG-----SYYGPAGFIY 491


>gi|209515951|ref|ZP_03264812.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209503609|gb|EEA03604.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 431

 Score =  291 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 112/443 (25%), Positives = 193/443 (43%), Gaps = 23/443 (5%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
             +       ++I      +L +P     V V+DP  ADV V +P T+++ GK  G   +
Sbjct: 3   GALAASGDPSLAIAAGGGEMLHLPEAAVAVFVADPDVADVHVPTPETVFVLGKKAGTTTL 62

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
             +G   + +L   +++  D   ++  L        + +     ++++ G V     +  
Sbjct: 63  FALGAHNRTILRETVVVSADTPSIQRMLDARFPQFQLTLTAAPGSLMVAGRVPDAAAADA 122

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            ++    +L             + ++N L +    QV L+V I EV R++ +Q+G   + 
Sbjct: 123 VMQSLTPYLHDK----------ETLVNRLTLTRPIQVHLRVRITEVDRNVTQQLGINWNA 172

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHALERATAIRTLAE 274
            G S            G   +         +L  F       + VL AL++   I  LAE
Sbjct: 173 LGQSGNFIGGLFNGRAGSATTTLSSTGAFSILGAFQAGKWAIDGVLDALDQEGLITMLAE 232

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LTA+SG++ASF +GG+         T + ++    YGV L FTPTVL+  RI L+++ 
Sbjct: 233 PNLTAMSGETASFLAGGEFPIPVPQGQTNSITIEFKPYGVSLDFTPTVLADNRISLKVRP 292

Query: 335 EVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE          +  +P+  VR+ +TTVEL SG +  + GLL+ +   +   +P L K
Sbjct: 293 EVSELDTTNGVTIDSIKVPALTVRRVETTVELSSGQSFAIGGLLQSNTSDVLAELPGLGK 352

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           +P+LG LF +  +   ++E+ +  TP++V+P     L +P D          +       
Sbjct: 353 LPVLGKLFSSKSYLNNKSEVVVIVTPYIVQPAEPGRLRQPIDTIVHPSSDIEYVLQSRLG 412

Query: 451 IYGPKEASEVEGQNYKGAIGFIY 473
           I               GA GF+Y
Sbjct: 413 IDPLSG----SVPRLVGAAGFVY 431


>gi|170692564|ref|ZP_02883726.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170142220|gb|EDT10386.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 614

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 122/461 (26%), Positives = 211/461 (45%), Gaps = 25/461 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S N + A+     +  AA          +   + + + K  ++Q    V++  + +P
Sbjct: 56  MTISMNAAPAQPSSAMQNAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LIAQATMVSPKTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADAGGLQTSLSQLMPDE 174

Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS------GRNQYANSSSKKVMNL 187
            NIRV  V+  +VL G V + Q + +A E+++ +   +        N   N  S  V+N+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARTTLPNPNGAANGNGNGKSATVLNM 234

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           +++    QV L+V +AEV + +L Q+G   +I G     S +  +       S       
Sbjct: 235 MSVDSPQQVMLEVKVAEVSKTVLNQLGAAMNIQGGFGSWSGALISSLLAGVSS----IVD 290

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               +   F   + A      ++ LAEP L  +SGQ A+F +GG+       S+    S 
Sbjct: 291 VNKANNRPFNVAIDAQHGDNLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGVST 350

Query: 308 ---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRK 355
                 ++GV L FTPTVL+ GRI L++  EVSE                  +P    R+
Sbjct: 351 IILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITTRR 410

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A TTV++  G T  + GL+K +     + IP + ++P+LGALFR++ + ++ TE+    T
Sbjct: 411 ASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELVFIIT 470

Query: 416 PFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           P LVKP+    +L  P DH    ++A  +    +       
Sbjct: 471 PHLVKPLQTASNLPLPTDHLKTPNEADVYLMGNMEGRDPAG 511


>gi|323529413|ref|YP_004231565.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386415|gb|ADX58505.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 616

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 120/466 (25%), Positives = 213/466 (45%), Gaps = 27/466 (5%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
              S NP+ A+     ++ AA          +   + + + K  ++Q    V++  + +P
Sbjct: 56  MTISMNPAPAQPANTMQSAAARGPACTRTQSEQSTVVVPVGKSTLMQTAEPVRNRTLGNP 115

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A   + SP+T+Y+ G  VG  N+I+ G  G     +++++  D   L+ +L + + D 
Sbjct: 116 LVAQATMVSPQTLYVVGMAVGTTNMIVQGKSGAC-EVINVVVNADSGGLQTSLSQLMPDE 174

Query: 135 -NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS--------GRNQYANSSSKKVM 185
            NIRV  V+  +VL G V + Q + +A E+++ +   +          N  A + +  V+
Sbjct: 175 PNIRVSTVAGDLVLAGRVSSAQAAAQAQEIAKAYARSTLPAANGGTNGNGGAPAKAATVL 234

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N++++    QV L+V +AEV + +L Q+G   +I G     S +  +       S     
Sbjct: 235 NMMSVDSPQQVMLEVKVAEVSKTVLNQLGSAMNIQGGFGSWSGALISSLLSGVQS----I 290

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +     +   F   +        ++ LAEP L  +SGQ A+F +GG+       S+    
Sbjct: 291 AAVSKANNRPFNVAVDGQHGDDLVKILAEPNLVTLSGQEATFLAGGKVFIPIPQSNLNGV 350

Query: 306 SV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRV 353
           S       ++GV L FTPTVL+ GRI L++  EVSE                  +P    
Sbjct: 351 STIILQEEEFGVGLKFTPTVLAGGRINLKVAPEVSELSSTGVTVGATNTNNLTVLPLITT 410

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+A TTV++  G T  + GL+K +     + IP + ++P+LGALFR++ + ++ TE+   
Sbjct: 411 RRASTTVQMNDGETFAIGGLIKSNAAGTLKAIPGVGEVPVLGALFRSTSYQQDRTELIFI 470

Query: 414 ATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            TP LVKP+    +L  P D     ++A  +    +          
Sbjct: 471 ITPHLVKPLQAVANLPLPTDRLKTPNEADVYLLGNMEGRDPAGSRK 516


>gi|300692331|ref|YP_003753326.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
 gi|299079391|emb|CBJ52062.1| pilus assembly secretion protein [Ralstonia solanacearum PSI07]
          Length = 644

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 113/446 (25%), Positives = 207/446 (46%), Gaps = 41/446 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +    ++++ + K  ++Q+P  V++  V +P     ++ SP+T+YL G+ VG  N+I+
Sbjct: 119 GAMRAHSEVTVPVGKSTMVQLPEPVRNRTVGNPNVVQAMLVSPQTLYLLGQEVGTTNMIV 178

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L  TL   + D+  +RV   +D++VL G V     +Q+ 
Sbjct: 179 QGRSGSC-SVIDVAVGADPGGLLATLHELVPDAKGVRVSAAADSLVLSGSVSDSVQAQKV 237

Query: 161 VELSETFLSQSG----------------------RNQYANSSSKKVMNLLNIAGEDQVTL 198
           V+++  F+++                            A   S +++N++ +    QV L
Sbjct: 238 VDIANAFVTRQTRGPSQHDQGGGQGANSATQGAITAPGAQPRSPRIINMMAVEAPQQVML 297

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           +V +AEV + ++ Q+G   ++  +    S    A+    F+S   D       +    + 
Sbjct: 298 EVKVAEVSKTLIDQMGAAFNLNSAFGSWSFGAIAN----FLSSSQDLVSFSKANNLPLKF 353

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVV 315
            L A      ++ LAEP+L AISGQ ASF +GG+       S TG  +        +GV 
Sbjct: 354 ALDAQRGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVPQSFTGGVTTIVLQEETFGVG 413

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGG 366
           L FTPTV+  GRI L++  EVSE                  +P    R+A TT+++  G 
Sbjct: 414 LRFTPTVMENGRINLKVAPEVSELSPTGVAVTAANTNGTTILPLITTRRASTTLQVRDGQ 473

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  + GL+K ++    + +P + ++P++G+L R++ F R++TE+    TP LVKP+    
Sbjct: 474 SFAIGGLIKSNVTGSLKALPGIGELPVIGSLARSTSFQRDQTELLFVVTPRLVKPL-PAQ 532

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIY 452
              P D +   +  + +    +    
Sbjct: 533 YPMPTDSFGPINRGELYLNGNMEGRR 558


>gi|152994347|ref|YP_001339182.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150835271|gb|ABR69247.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 463

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 119/441 (26%), Positives = 210/441 (47%), Gaps = 14/441 (3%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
               +  +FL S     A L P     E+ + +   +  ++     +++ +N+  +L +P
Sbjct: 9   VVPLLFGVFLLSGVSRAAYLEPMNNTSESQSVIGTSAYQQVEVSGNVNLVVNRGKLLTLP 68

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            +   VL+++P  A   + SP  +++F K  G  ++  +  + + +L L +    D+  L
Sbjct: 69  QNAAKVLIANPDIASFQMPSPDNVFVFAKKSGSTSLYALDDENQVILALTLNAGYDLNSL 128

Query: 124 EMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              + + +  SN++V   + + +++ G V+T Q ++R ++  E F+           S  
Sbjct: 129 TKQVAQEVPGSNVQVGPATENGLIVRGSVQTPQQAKRVIDSVEAFVGGDATGSAGAGSQT 188

Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGGKF 238
            +++N L +    Q+ + V I EV R++   +GF        G     + +   D     
Sbjct: 189 LRIVNQLKVELSSQINISVRIVEVSRNLSSSLGFSWDALFDNGKYFARNSASLFDATTGA 248

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +  G  +        +   VL AL        LAEP LTA+SG++A F  GG+     +
Sbjct: 249 FTGSGVTNAVFGGASGNLGGVLSALSNDGLASILAEPNLTAMSGETAGFAVGGEVPIVII 308

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVR 354
             +    ++    YGV++  TPT+LSP RI L I  EVS+      + +    +P+++VR
Sbjct: 309 --TNNNVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLTEEGAVELQGLTVPAFKVR 366

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +ADTTVEL SG +  LAG+L+  + Q   G+P L  IP LG LF +    +EETE+ I A
Sbjct: 367 RADTTVELASGQSFALAGMLRSSVSQTVTGVPGLRSIPGLGRLFESETNQKEETELVIIA 426

Query: 415 TPFLVKPVAMRDLSRPDDHYS 435
           T ++V P +  DL  P    S
Sbjct: 427 TAYVVAPTSSGDLQTPAKGIS 447


>gi|78186671|ref|YP_374714.1| type II secretion system protein [Chlorobium luteolum DSM 273]
 gi|78166573|gb|ABB23671.1| type II secretion system protein [Chlorobium luteolum DSM 273]
          Length = 486

 Score =  290 bits (742), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 114/454 (25%), Positives = 194/454 (42%), Gaps = 54/454 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            + + +  + ++P  V  V V DP  AD ++ +P  +YL GK  G  N+ +    GK + 
Sbjct: 38  RVPVGESRVYRLPQPVTRVAVGDPEVADYIMLNPSEIYLLGKKTGSTNLTVWDRKGK-VS 96

Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           +  + + R++A ++  LR  +     I++      +VL G       +  A  L   +  
Sbjct: 97  SRSLRVSRNVAPIQELLRVVLPGETGIQLYASGHALVLSGSASDAMAADTAYRLVIAYSG 156

Query: 170 QSGRNQYANSS--------------------------------------------SKKVM 185
            +       S+                                            + +V+
Sbjct: 157 GTVPALNPESALLAGSAGASGSVGAPGISGIHDSAPAAPSALPGAAASRSPAARDTPRVV 216

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           NLL I    QV L+V IAEV R  ++ +G   +    S+  S                  
Sbjct: 217 NLLKIRDPQQVRLEVRIAEVSRSHIESLGIGWTQGRGSTQGSLMTGFVSNATLDLLLKTG 276

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            + G  +       + A ++   ++ LAEPT+ A+SG+   F  GG+        + G+ 
Sbjct: 277 GMPGSTEGNRLT--VDAEQKKGLVKILAEPTIVAMSGEEGYFLVGGKVYTP-TLGTNGSV 333

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
                 YGV L  TPTVL  GRI L++  EVSEP    V    +  +P++++  A TTV+
Sbjct: 334 DYVERTYGVGLRCTPTVLDSGRISLKVAPEVSEPLKEAVTAGTSTSLPAFKLSYASTTVQ 393

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +V+ GLL+D++ ++K  +PLLS IP+LG+LFR++  N+E TE+ +   P LVK 
Sbjct: 394 MQEGENLVIGGLLRDNLTEVKRSVPLLSSIPVLGSLFRHTEMNKETTELMVIVRPTLVKA 453

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
                   P D +      + F   +++   G K
Sbjct: 454 GNP-APELPTDRFVPPAPLELFIEGKLDGSGGAK 486


>gi|294012433|ref|YP_003545893.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675763|dbj|BAI97281.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 499

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 126/470 (26%), Positives = 219/470 (46%), Gaps = 27/470 (5%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T  T  +  L     ++     +  A  + +N +   +     + + +    ++ +P  +
Sbjct: 5   TVHTAAAKPLLGPAIALGLAVAVAAAPTSALNAAPASMQDNAIL-LSVGGSKVINLPAKM 63

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            DV++ DP   DV V S   +YL  K  G+  V     +GK + +  + +  ++  ++  
Sbjct: 64  SDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATATNGKVLFSGTVRVGNNLTSIDDM 123

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  + +++I V  ++  V+L G +   +D+  A  L++ F+ +             V++
Sbjct: 124 LKLAMPNADIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFVGKEVT----------VVS 173

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAAD 233
            L  A   QV L+V IAEV RD+  +IG                    +    + +    
Sbjct: 174 RLRTATPLQVNLQVKIAEVSRDVGHKIGMNWKSQDLTGGKWAGGIGGGTRDAITFNSGGG 233

Query: 234 FGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               F ++GG        +       VL   E +    TLA+P LT++SG++ASF +GG+
Sbjct: 234 GTFNFTADGGYSLGGVARVLGLDIGAVLDLAESSGLATTLAQPNLTSLSGETASFLAGGE 293

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           + Y   + + G  S+    YGV L FTPTVL+ GRI LR++  VS     V++  +P+ R
Sbjct: 294 YPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRPTVSSLDFSVDS-SVPALR 351

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A+TTVEL SG   ++AGLL +D       +P +  +PILG+LF++  F R ETE+ I
Sbjct: 352 SRTAETTVELGSGQAFMIAGLLNNDTANSISKVPGIGNLPILGSLFKSRNFQRHETELVI 411

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             TP+LVKP+   D+  P D +   ++ +  F  + +       A     
Sbjct: 412 VVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGHDGISGAHAPMPSR 461


>gi|27378611|ref|NP_770140.1| hypothetical protein blr3500 [Bradyrhizobium japonicum USDA 110]
 gi|27351759|dbj|BAC48765.1| blr3500 [Bradyrhizobium japonicum USDA 110]
          Length = 550

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 132/534 (24%), Positives = 216/534 (40%), Gaps = 73/534 (13%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-----KKISIGLNK 56
           R   +T   +++  +     +VA   P   A AA    S   +        +++ + +NK
Sbjct: 5   RVSGKTVARLLAFGVMGLGAAVALCGPADRAEAADRRGSSGGVFVSEMNDVQRVRVVVNK 64

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
               +V      ++   P   DV   S   +Y+ GK  G  NVIL     KQ+  LD+ +
Sbjct: 65  SRTFKVDTAFATIIAGSPDIVDVKSLSDHMIYVQGKQTGTTNVILFDSAMKQIGVLDVEV 124

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             D  +L+  +R       +RV      VVL G       ++RA+ ++ + +++ G    
Sbjct: 125 VIDTGNLQQNIRTGTGMQGVRVSASEGQVVLSGTAVDAVAAERAMAIATSTVAKGGT--- 181

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------- 219
                  V+N +++A   QV L+V   EV R+  + +G   S                  
Sbjct: 182 -------VVNAMSVAAPQQVMLEVRFLEVSREAGRNLGVNLSAANANGTNIGNSGLGRVT 234

Query: 220 ------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------- 252
                  G  +  +    A  G    +  G   V G L                      
Sbjct: 235 AAGRTPIGGINTANGPLGAGGGPVGSAPTGSLPVLGTLGTLAGTAGGIAPAPFGTLLTSL 294

Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---GA 304
                  S + ++ ALE     R LAEP LT +SG +A F +GG+      + +T     
Sbjct: 295 IRTSNGGSVDMLISALETKGLARRLAEPNLTTLSGDAARFLAGGEFPVPIPTQTTNGFPT 354

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTV 360
            ++    +GV L F PTVLS G I LR++  VSE      + +    +P+   R A TTV
Sbjct: 355 ITIEYKKFGVELAFVPTVLSRGVINLRVEPSVSELDFANAVTIQGTTVPALTRRDARTTV 414

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G +  +AGLL+   +Q    +P +  +P++G LF +  + +EET++ I  TP LV 
Sbjct: 415 ELRDGQSFAIAGLLQTRNRQDVSQLPWIGSVPVIGTLFSSKSYQQEETDLVIIVTPRLVA 474

Query: 421 PVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           P A  + L+ P D     +D   F   ++  +    +     G + KG  G I 
Sbjct: 475 PAAPGQQLASPLDSRLPANDVDFFLNGQME-VRKRYDDYVNSGGDVKGPYGHII 527


>gi|148557761|ref|YP_001265343.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148502951|gb|ABQ71205.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 526

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 134/502 (26%), Positives = 208/502 (41%), Gaps = 67/502 (13%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR   +       I   +  P  A         AA +  + +     +  ++ +    ++
Sbjct: 1   MRASMKFLAGGALITAIALAPVAASAAVRPSRGAAAVRTATIG-KPSETTTLSIGSGQMI 59

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +   + D+ V+D   ADV V S   +YLFGK  G+  V      G  + +  + +  +I
Sbjct: 60  ALSAPISDLFVADDKIADVQVRSTTQLYLFGKGAGETAVYATDKAGNVVWSSIVRVGSNI 119

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             ++  L+  + ++ I    ++  V+L G V +  D + A +L E F+ +          
Sbjct: 120 TSVDTMLKLAMPEAAITATTMNGIVLLTGTVASPSDVEEAQKLVEQFVGKET-------- 171

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--------------- 225
             +V+N L  A   QV+L V IAEV R+  K IG       ++ G               
Sbjct: 172 --QVVNRLKSAVPLQVSLHVKIAEVSREFAKSIGINLLNRDTTGGFLFGVAQGRNFGSIG 229

Query: 226 ------------------------------------PSKSFAADFGGKFVSEGGDFSVKG 249
                                                  ++  D  GK    G  F + G
Sbjct: 230 NLDTSAFPKLDASSLYGLPAGSLSLPFNPATGQFIAGGTAYTFDKLGKGAGSGTSFGLAG 289

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     +   E    + TLA+P LTAISG++ASF +GG+          GA SV  
Sbjct: 290 KFLGMDLAAAIDLAEADGLVTTLAQPNLTAISGETASFLAGGEIPIPLA-QGLGAVSVEF 348

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSG 365
             YGV L FTPTVL  GRI +R++ EVS+         N   +P    R+A+TTVEL SG
Sbjct: 349 KQYGVSLSFTPTVLGDGRISIRVRPEVSQLTDAGSVRLNGFTIPGITTRRAETTVELGSG 408

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
              ++ GLL +      +  P L  +PILGALFR++ F R ETE+ I  TP+LVKPV+ +
Sbjct: 409 QAFMIGGLLSNAQNSNVDKAPFLGDLPILGALFRSNGFKRNETELMIVVTPYLVKPVSPQ 468

Query: 426 DLSRPDDHYSVEDDAKAFFFNR 447
            ++ P        D +     +
Sbjct: 469 QIALPTAGLRAATDGERLIAGQ 490


>gi|193213115|ref|YP_001999068.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
 gi|193086592|gb|ACF11868.1| type II and III secretion system protein [Chlorobaculum parvum NCIB
           8327]
          Length = 472

 Score =  288 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 116/451 (25%), Positives = 191/451 (42%), Gaps = 53/451 (11%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           I       +   +  + ++   ++ V V +P  AD ++ +P  +YL GK  G  N+I+  
Sbjct: 30  IAAPSTYRVSEGESRVYRMGSPIKRVAVGNPEIADYIILNPTELYLLGKKTGATNLIVWD 89

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G    +  + + R++  ++  +R  + +  +I +      +VL G V     ++ A  
Sbjct: 90  QNGNS-ASTPLQVSRNVEPIKDLIRTVLPNETDIHIYSSGPALVLAGTVSNSLAAETAYR 148

Query: 163 LSETFLSQS-------------------------------------GRNQYANSSSKKVM 185
           L + +L                                        G      S    V+
Sbjct: 149 LVKGYLGGDVPADNPEKTLTNTKPADSYAGTASLSGIVKSASLVAGGPTGAEGSGMSGVV 208

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           NLL +    QV L+V IAEV +  ++ +GF+ +      G   + +      FVS     
Sbjct: 209 NLLKVRDAQQVRLEVHIAEVSKTFMQALGFEWA------GRIGNVSGGLMTGFVSNETIN 262

Query: 246 SVKGVLDRFSFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            +    D  S    + A        I+ LAEPT+ A+SGQ   F  GG+       ++ G
Sbjct: 263 LLLK--DNTSHSQRIKAENECDNGWIKILAEPTIVAMSGQEGYFLVGGKIYVP-TITANG 319

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVE 361
           A       YGV L FTPTVL  GRI L++  EVSEP        G + +++   A TTV+
Sbjct: 320 AVDYQERTYGVGLRFTPTVLDAGRISLKVAPEVSEPPTSAADGTGTLLAFKTSYASTTVQ 379

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +V+ GLLKD I +  + +PLL  IP+LGALFR+++   E TE+ +   P LV+ 
Sbjct: 380 MNEGQNLVIGGLLKDKITETLKAVPLLGDIPLLGALFRHTKIESENTELLVVVRPTLVEA 439

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
                   P D +      + FF  ++    
Sbjct: 440 SDTPP-ELPTDRFIPPTQKELFFDGKLQGSR 469


>gi|297581608|ref|ZP_06943530.1| flp pilus assembly protein [Vibrio cholerae RC385]
 gi|297534015|gb|EFH72854.1| flp pilus assembly protein [Vibrio cholerae RC385]
          Length = 469

 Score =  287 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 115/457 (25%), Positives = 202/457 (44%), Gaps = 37/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               + + +N+  I+ V  D+QDV VSDP    V   S R + + GK++G  +++++G +
Sbjct: 21  AESPLVLHVNQNQIITVDGDIQDVFVSDPKIVVVHAPSSRHVMVSGKDIGSTDLLIMGEN 80

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            + + +  + +  D++ LE  ++    ++NIR       +V+ G V     +   + ++ 
Sbjct: 81  AQTLAHYKLNVNADLSELERAVQHAFPEANIRFAYSKGAIVVMGEVANPLQAHEVLSMAS 140

Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            F                        S + +        K V+N L   G  QV + + I
Sbjct: 141 GFARGLQKPEQQTLDMPANSASSGRDSGAAKPGGGIGDYKFVVNQLKTQGSAQVNISIRI 200

Query: 203 AEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
            E+ R   +Q+G + S  G+   G   +     G    ++    ++     +     ++ 
Sbjct: 201 VEMERATSEQLGLRWSSIGNMRWGTWDTLQTALGATPGNKFPTNTLPSGNGQHGLNVIID 260

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G  S+    +G+ L  TPT
Sbjct: 261 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVDNGDDG-VSIEFKKFGIALEVTPT 319

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  +I L +  EVS    E  + +   ++P    R+A TT+EL  G +  LAGL++  
Sbjct: 320 VLSNRQISLTVAPEVSTLSRENSVSIAGVEVPGIETRRATTTIELADGQSFALAGLVRTY 379

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436
                E +P L +IPIL   F  + F   E+E+ I AT  LV+P     +L+ P D Y  
Sbjct: 380 QDHKVEALPFLGEIPILAPFFSTNSFKNSESELVIIATARLVEPSSDPAELTTPLDRYRP 439

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  F +++         +  E     G  G+ Y
Sbjct: 440 ASRFERLFLHKM-------GETHDESTRLFGHYGYNY 469


>gi|227819321|ref|YP_002823292.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
 gi|227338320|gb|ACP22539.1| CpaC pilus assembly protein [Sinorhizobium fredii NGR234]
          Length = 496

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 113/451 (25%), Positives = 208/451 (46%), Gaps = 34/451 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
            G  +++++  N  I ++      D+++      DVV  S +++++ GK  G  N+ +  
Sbjct: 46  TGSVQQVTLAPNDTITVRTGKPFGDLVIGSAEMIDVVPLSDQSLFIRGKQTGATNISVYD 105

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            +   +  +D+ +  D + +   +R     + +RV   +D + L G VR   + QR +E+
Sbjct: 106 DNKALVGVIDVRVAADFSEVASAIRSTAPSAQVRVFNSNDRIRLTGTVRDAVELQRVMEI 165

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-- 221
           ++++            S++ V+N L +A   QV L+V + E  R   + +G   S  G  
Sbjct: 166 AQSY------------SAEPVLNQLRVAESQQVMLEVRVIEASRQTGRDLGIGWSGQGRN 213

Query: 222 ----------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                            +   +   AA         G   +    +     + V++ALE+
Sbjct: 214 GIGKATTSQGITVDDDGNLARTLGDAAGAATGMQPFGQLIAKVLEISGGQIDIVINALEQ 273

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTTHDYGVVLHFTPTVL 323
              +R LA+P L A+SG++ASF +GG+   ++   + +T AT      +GV L F+P VL
Sbjct: 274 KGLVRRLAQPNLIAMSGETASFHAGGEVPIQSTVANGATLATETDYRPFGVRLTFSPVVL 333

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G I L+I+ EVSE    ++    P +  R A TTV L  G +  +AGLL+    +  +
Sbjct: 334 DGGLISLKIEPEVSEIDPSISVNGNPGFISRAASTTVALRDGQSFAMAGLLQSVNAKDVQ 393

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKA 442
            +P L ++P++GALFR++ F + E+++ I  TP +V+P     DL  P +     +D + 
Sbjct: 394 QLPWLGQVPVIGALFRSTSFLKRESDLVIVVTPHIVRPSKPGEDLYSPLEQTRSSNDVEL 453

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           F    + ++          G+  KG  G   
Sbjct: 454 FALG-ILEVDKDMLRRFRNGEGVKGPYGHRL 483


>gi|296284552|ref|ZP_06862550.1| type II and III secretion system protein [Citromicrobium
           bathyomarinum JL354]
          Length = 502

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 131/476 (27%), Positives = 210/476 (44%), Gaps = 40/476 (8%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
               A L     +    +  +   +   + I + + K  ++ VP  + DV +++ + AD+
Sbjct: 1   MLLGAALCAAPLSIVPTMADAQSVVRPTQDIVLSIGKGELINVPGSMADVFIANDSIADI 60

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V S R +YLFGK+ G+  V      G  +   ++ +  +I  L+  L   +  + I V 
Sbjct: 61  QVKSQRQLYLFGKSGGETTVYASNAAGDVIWAANVRVGSNIGSLDQMLALAMPQAKISVA 120

Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
            +  +TV+L G V   +D+  A  L   FL               V+  L  A   QV L
Sbjct: 121 TMGSNTVLLTGTVANPEDAAEAERLVSAFLGDET----------NVIARLTTATPLQVNL 170

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------ADFGG 236
           +V  AEV R +++ IG     + +++G                            +D   
Sbjct: 171 QVRFAEVSRSLVRAIGANLLSSDATNGFQFGVTRGRNFAPQYTPGGPVGVGVTGGSDGST 230

Query: 237 KFVSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G   ++ G+           L   E    + TL++P LTA+SG++A F +GG+  
Sbjct: 231 VITGNGTGATIAGLGSLFGMDLAAALDLAETNGLVSTLSQPNLTALSGETADFLAGGEFP 290

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350
                   GATSV   +YGV L +TPTVL+ GRI +R+  EVSE         +   +P+
Sbjct: 291 IPIS-QGLGATSVEYRNYGVKLTYTPTVLANGRISIRVSPEVSELSSQGAVSLDGVQIPA 349

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+A TTVEL SG + ++AGL+ ++ Q   +  P L  +PILG LFR++ F + ETE+
Sbjct: 350 LITRRASTTVELGSGQSFMIAGLMTNNSQSTIDKAPGLGDVPILGNLFRSNSFRKGETEL 409

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            I  TP+LVKPV   D+  P D Y+  D      F       G  +       + +
Sbjct: 410 VIVITPYLVKPVDGNDIRLPTDGYNSPDTLSQLGFKETVPQGGVPDRPGPTTSDRQ 465


>gi|149186255|ref|ZP_01864569.1| type II secretion system protein [Erythrobacter sp. SD-21]
 gi|148830286|gb|EDL48723.1| type II secretion system protein [Erythrobacter sp. SD-21]
          Length = 522

 Score =  286 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 127/470 (27%), Positives = 208/470 (44%), Gaps = 51/470 (10%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  ++I + + +  ++ VP ++ DV +S+   ADV V S R +YLFGK+ G+  V 
Sbjct: 30  QSVTSPSQEIVLSIGRGELVNVPGNMADVFISNENVADVQVKSRRQLYLFGKSGGETTVY 89

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQR 159
                G  +   ++ +  +I  ++  L   + ++ I V  + +  V+L G V   +D+  
Sbjct: 90  ASNAAGDIIWAANVRVGSNIGSIDQMLSLAMPEAKINVATMGNNTVLLTGTVAAPEDAAD 149

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A  L + ++ +             V++ L +A   QV L+V IAEV R +++ IG   + 
Sbjct: 150 AQSLVQAYVGEGT----------NVISRLRMATPLQVNLQVRIAEVSRSVVRAIGVNLAT 199

Query: 220 TGSSSGPSKSFAADFGGKF-----------------------------------VSEGGD 244
             SSSG         G                                      ++ G  
Sbjct: 200 VDSSSGFQFGVGQGRGAVSQFQPSFVNPVTGERIQGPLAVGQEFEGEGATIIDQITPGST 259

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
               G L        L   E    + TL++P LTA+SG++A F +GG+          G 
Sbjct: 260 LGAFGNLLGLDIGAALDLAETQGLVTTLSQPNLTALSGETAEFLAGGEFPIPLS-QGLGT 318

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTV 360
           T++   +YGV L +TPTVL+ GRI +R++ EVSE        +N   +P+   R+A+TTV
Sbjct: 319 TTIEYKNYGVSLAYTPTVLANGRISIRVRPEVSELSSQGSITLNGFQVPALITRRAETTV 378

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL SG + ++AGLL ++ Q   E  P L  +P++G LFR++ + + ETE+ I  TP+LVK
Sbjct: 379 ELGSGQSFMIAGLLSNNSQNSIEKAPGLGDVPVIGNLFRSTTYRKGETELVIVVTPYLVK 438

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           PV   D+  P D Y    + +     R                      G
Sbjct: 439 PVNANDIRLPTDGYLKPTEMQRLIALREGDSEAGLVRPMPSANGTGANPG 488


>gi|37680194|ref|NP_934803.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
 gi|37198941|dbj|BAC94774.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus YJ016]
          Length = 462

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G
Sbjct: 20  AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79

Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G+ + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + 
Sbjct: 80  KEGEAIAHYRLNVKNSGLSQLEHHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139

Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
           L   F      ++                        S    V+N L I    QV + + 
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+ +   +++G +      +           G +F +         ++   +F  ++ 
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+  
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
            +   + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+  
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +   F  +            +     G  G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|320156053|ref|YP_004188432.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
 gi|319931365|gb|ADV86229.1| flp pilus assembly protein, secretin CpaC [Vibrio vulnificus
           MO6-24/O]
          Length = 462

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G
Sbjct: 20  AHAAKQIDLEVGQSRLIPLSQEMRSVYIVDSTIADVKTPSARSALVFGAKVGKTDLVIVG 79

Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G+ + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + 
Sbjct: 80  KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRIALQSVGDSIAVAGTVASPEMAADILS 139

Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
           L   F      ++                        S    V+N L I    QV + + 
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+ +   +++G +      +           G +F +         ++   +F  ++ 
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+  
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
            +   + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+  
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +   F  +            +     G  G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|27365651|ref|NP_761179.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
 gi|27361799|gb|AAO10706.1| Flp pilus assembly protein, secretin CpaC [Vibrio vulnificus CMCP6]
          Length = 462

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/457 (23%), Positives = 198/457 (43%), Gaps = 41/457 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K+I + + +  ++ +  +++ V + D T ADV   S R+  +FG  VG+ +++++G
Sbjct: 20  AHAAKQIDLEVGQSRLIPLSKEMRSVYIVDSTVADVKTPSARSALVFGAKVGKTDLVIVG 79

Query: 104 HDGKQMLNLDILIERD-IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G+ + +  + ++   ++ LE  L        I ++ V D++ + G V + + +   + 
Sbjct: 80  KEGEAIAHYRLNVKNSGLSQLERHLETLYPSHRITLQSVGDSIAVAGTVASPEMAADILS 139

Query: 163 LSETFLSQSGRNQ---------------------YANSSSKKVMNLLNIAGEDQVTLKVT 201
           L   F      ++                        S    V+N L I    QV + + 
Sbjct: 140 LVNNFAVGQVADKERLKEINADASRKSANPPEGPGGQSVLPLVINQLKITAAPQVNISIR 199

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+ +   +++G +      +           G +F +         ++   +F  ++ 
Sbjct: 200 MVEMAKSTSEELGIRWQSVNPNW----MLGVSPGNQFATGIDLTDPDNLIKESAFMGIID 255

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG+ A F  GG+  + ++   +    V    +GV L  TPT
Sbjct: 256 ALASKSLVNVLAEPNLTAKSGEKAEFLVGGEFPFPSIDGES--VGVEFKSFGVGLSVTPT 313

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLS  RI L +   VS    +  I +N  D+P    R A TT+EL  G +  LAGLL+  
Sbjct: 314 VLSENRISLTVTPVVSALSRQNSIKINGVDVPGLDKRTATTTIELADGQSFALAGLLRTS 373

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
            +   + IP L ++P +GALFR ++  + E E+ I AT  LV+P   +  +  P DH+  
Sbjct: 374 EENSVDAIPFLGELPGVGALFRTNKNQQIERELVIIATASLVQPTGDIESIPTPLDHFRA 433

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +   F  +            +     G  G+ Y
Sbjct: 434 PTRLERLLFGELE--------GHTDTPKLIGDYGYRY 462


>gi|162147491|ref|YP_001601952.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545598|ref|YP_002277827.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786068|emb|CAP55650.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533275|gb|ACI53212.1| type II and III secretion system protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 473

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 127/489 (25%), Positives = 212/489 (43%), Gaps = 36/489 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           + R    M +    S   + A       A +  +      +     + I      ++++ 
Sbjct: 3   ISRRVLPMAAFAGMSLCLAGADARSTHPAASGSVAHGAHAV-----LGIEEGAGKLVKLD 57

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDI 120
               ++ V+DP   +V   SP +M++FG   GQ  VI     G  +    ++        
Sbjct: 58  GIATNIFVADPKVVEVRAASPDSMFVFGVGAGQTTVIATSRSGGVVARYTVVVLPSSYRA 117

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           + L   + +      I       ++ + G   + + +++A+E +   + + GR     S 
Sbjct: 118 SALRRDVGQQNPRVRIG-TGADGSIGIEGTETSSESAEQALEGATALVGKGGRVGDYAS- 175

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAADFGGKF 238
                    + G  QV LKV I E+ R +++++G +        ++       ++     
Sbjct: 176 ---------VPGSIQVNLKVRIVEMSRSLVRELGVEWQSVNALGTAAAIGISTSNPLAAL 226

Query: 239 VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            +E   F+              ETV+ AL +   I +LAEP LT +SGQ+ASF  GG++ 
Sbjct: 227 TTEQSAFNFLSRFSAAGRPVTVETVIDALSQDGLIHSLAEPNLTTVSGQAASFIVGGEYP 286

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------VNAG 346
               S +     V    YG+ L F PTVL+ GRI L ++ EVS                 
Sbjct: 287 IPVSSYNNNIN-VQYKQYGISLAFVPTVLADGRISLHVRPEVSALSTQGAVTLSEANGNL 345

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+  VR+ADTTVEL SG +  +AGL++D       G+P L  IP+LGALF++S F + 
Sbjct: 346 QIPALTVRRADTTVELGSGQSFAIAGLMQDSTNMQGLGLPFLGDIPVLGALFKSSSFQKN 405

Query: 407 ETEIFIAATPFLVKPVAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           E+E+ I  TP+LV+PV     L  PDD+++   D    F  R N IY       V  ++ 
Sbjct: 406 ESELVIVVTPYLVRPVDNESMLHSPDDNWAPPGDLDRIFLMRQN-IYKYAGKKNVARRDV 464

Query: 466 KGAIGFIYK 474
               GF+ +
Sbjct: 465 NSDAGFMVE 473


>gi|85373131|ref|YP_457193.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
 gi|84786214|gb|ABC62396.1| type II secretion system protein [Erythrobacter litoralis HTCC2594]
          Length = 574

 Score =  281 bits (719), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 128/520 (24%), Positives = 225/520 (43%), Gaps = 72/520 (13%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           + ++R       +   ++ P  A    +  A +         +   + + + + +  ++ 
Sbjct: 25  KTMKRRLIAKALVASLAALPVAAGPAQVAHAQSI--------VKPSQDVVLSIGRGELIS 76

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           VP  + DV +++   ADV + S R +Y+FGK+ G+  +      G  +   ++ +  +I 
Sbjct: 77  VPGAMADVFIANDAVADVQIKSQRQLYVFGKSGGETTIYASNSAGDVIWAANVRVANNID 136

Query: 122 HLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            L+  L   + ++ I    +  +TV+L G V   +D+  A  L   FL            
Sbjct: 137 SLDQMLALAMPEAKIATATMGTNTVLLTGTVAAPEDAAEAERLVTAFLGDGA-------- 188

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKF 238
              V++ L +A   QV L+V IAEV R ++++IG   +   ++ G     +   +FG   
Sbjct: 189 --NVISRLKMATPLQVNLQVRIAEVSRSLVREIGSNLTTRDTTDGFLFGVNRGRNFGSIT 246

Query: 239 VSEGGDF----------------------------------------------SVKGVLD 252
             +   F                                              +  G L 
Sbjct: 247 DIDTSGFPQLDASAQFGLPPGSLSLPFNPATGQFVVGGANFPVASNNPGQTALNFAGRLF 306

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                +     ER   I TL+ P LTA+SG++A+F +GG+          G TS+   ++
Sbjct: 307 GLDIASAFDVGERLGLITTLSNPNLTALSGETATFLAGGEFPIPIS-QGLGTTSIEYRNF 365

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTI 368
           GV L ++PTVL+ GRI +R++ EVSE        +N   +P+   R+A+TTVEL SG + 
Sbjct: 366 GVSLAYSPTVLANGRISIRVRPEVSELSSQGAITLNGFQIPALTTRRAETTVELGSGQSF 425

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++AGL+ +  Q   +  P L  +PI+G LFR++ F + ETE+ I  TP+LVKPV   D+ 
Sbjct: 426 MIAGLMSNSSQNTVDKAPGLGDVPIIGNLFRSTSFRKGETELVIVVTPYLVKPVDGTDIK 485

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
            P D Y   ++ +       N      +  +   Q+  G 
Sbjct: 486 LPTDGYQTPNELQRTLGFLENDGKTGGDRPKPTAQDRDGP 525


>gi|19749313|gb|AAL98683.1| Y4xJ [Sinorhizobium fredii]
          Length = 411

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 128/458 (27%), Positives = 196/458 (42%), Gaps = 54/458 (11%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
                    + AV   +   I     +S  L K   + +P     + V+DP  AD    S
Sbjct: 1   MSAAAENNGDEAVPRAAPNSINATLNLSSSLGK--TVHLPAPAATIFVADPPIADYQAPS 58

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            RT+++FGK  G+ ++  +  +G+ +  L +++ + I  L   LR  + D  I V     
Sbjct: 59  NRTIFVFGKKFGRTSLFALDENGEALAELHVVVTQPIGDLRAMLRDQVGDYPIHVSYTPR 118

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L G     +    A  ++E FL               ++N + +AG  QV L V +A
Sbjct: 119 GAILSGTAPNAEVVDIAKRVTEQFLGDGA----------PIVNNIKVAGSLQVNLSVRVA 168

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           EV R  LK +G   S  G                G     GG   +    D  S   VL 
Sbjct: 169 EVSRSSLKALGINLSAFGQFGNFKVGVLNRGAGLGSATGSGGTAEIGFDNDAVSVGAVLD 228

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL +      LAEP LTA+SG++ASF +GG+                         F PT
Sbjct: 229 ALAKEHIASVLAEPNLTAMSGETASFLAGGE-------------------------FVPT 263

Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VL    I + ++ EVSE      + VN   +P+   R+ADT VEL SG + V+ GL++ +
Sbjct: 264 VLDNNLINIHVKPEVSELSLQGAVQVNGIAVPAVSTRRADTVVELASGQSFVIGGLIRRN 323

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSRPDDHYSV 436
           +       P L +IPILGALFR+S F +EE+E+ I  TP++V+P      +S P D  + 
Sbjct: 324 VNNDISAFPWLGRIPILGALFRSSSFQKEESELVILVTPYIVRPGSNPNQMSAPTDRMAP 383

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
                      +      + A   +  + KG +GFI +
Sbjct: 384 A----------LGTPPRARAAISTDAPSVKGDLGFIIE 411


>gi|237800794|ref|ZP_04589255.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023652|gb|EGI03709.1| type III secretion component [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 432

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 198/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    I + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 26  GAEGTIDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKTAGQTSLIALDS 85

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+    + V+  G V+ + ++     L 
Sbjct: 86  EGRETAALSLAVSSGTAAVTRPLKALHPQSRARISASGNRVIASGSVQDVGEATDLNAL- 144

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 145 ---------LSSEGQNFQSSVNSATYAGAAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 195

Query: 225 GPSKSFAADFGGKFVSEGGD---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +  G     S        + + +L AL+    +  LAEP +TA++
Sbjct: 196 TFSFGLLTGGSLAADAASGASNVISAGLTSGNVNIDAMLEALQSNGVLEVLAEPNITAMT 255

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 256 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 314

Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 315 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 374

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R  + P D                         
Sbjct: 375 FRSKRFQRNETELVILITPYLVEPVKERVAATPLDKQRATS------------------- 415

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 416 TASAGPRSGGAFGFYM 431


>gi|269105132|ref|ZP_06157826.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
 gi|268160582|gb|EEZ39081.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae
           CIP 102761]
          Length = 442

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +I+I  V       +++       + V  ++  V +SDP  AD  V     + +FGK +G
Sbjct: 13  IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 72

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             N+ +  ++G ++ N  +++ + +  ++  +     D+NI +    + VVL G V   Q
Sbjct: 73  HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 132

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
                  +  T LS+   +   N  +                 ++N + +    QV +K+
Sbjct: 133 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 192

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           +IAEV    L+QIG Q++  G + G   +   +F                       +V+
Sbjct: 193 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 235

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            A+      + LAEP L+ ISG+SASF  GG+    T+  +   T+VT  ++GV L    
Sbjct: 236 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 293

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            V    +I L +  EVS      +    D+P+ + R+A TTVEL  G + VL GLL  + 
Sbjct: 294 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 353

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++    +P +  IP+LGALFRNSR  R +TE+ I AT  LV+P+    +  P        
Sbjct: 354 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 411

Query: 439 DAKAFF 444
               FF
Sbjct: 412 TLDRFF 417


>gi|326797327|ref|YP_004315147.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326548091|gb|ADZ93311.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 464

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/445 (25%), Positives = 208/445 (46%), Gaps = 18/445 (4%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEAN--AAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            F T+ ++    S  + A     + A+  + +      E+    ++ + +N+  +L +P 
Sbjct: 6   YFLTLFAVCSVQSTLAFATYDVDQPADNNSRIAESRFEEVAVSGQVKLHVNQGTLLNLPK 65

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
               VL+++P  A   + SP  +++F K  G   +  +  +   ++ + +    D+  L 
Sbjct: 66  AASKVLIANPEVASFQMPSPDNVFVFAKAPGDTTLYALDENNDVIIAVTLTSGYDLEGLT 125

Query: 125 MTLRRFIADSNIRVEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK- 182
             + + +  + ++V   +D  +++ G V+T Q +++ +   E++L  S            
Sbjct: 126 RQVAKEVPGTEVQVGPATDKGLIVRGTVQTPQQAKQVISSVESYLGASTSANGRGGRGGQ 185

Query: 183 -----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--G 235
                +++N L +A   QV + V I EV R +   +GF       ++       +     
Sbjct: 186 SNQSLRIVNQLKVALSSQVNISVRIVEVSRSLTHALGFSWDTLFDNNTGFIRNGSSLFDA 245

Query: 236 GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
              V +G   S+  +         VL AL        LAEP LTA+SG++A F  GG+  
Sbjct: 246 STGVFDGSGISLGVLGGTIGDVGGVLSALSNDGMASILAEPNLTAMSGETAGFAVGGEVP 305

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPS 350
              V  +  + ++    YGV++  TPT+LSP RI L I  EVS+         N   +P+
Sbjct: 306 I--VIQTNNSVTIEYKQYGVIMRMTPTLLSPNRISLHIAPEVSDLSDDGSVVLNDTTIPA 363

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           ++VR+A+TTVEL SG +  LAG+L+  + Q   G+P L  IP+LG +F      +EETE+
Sbjct: 364 FKVRRANTTVELASGQSFALAGMLRSSVSQTVSGVPGLRSIPVLGRMFETEINQKEETEL 423

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYS 435
            I AT ++V+P +  +L  P    S
Sbjct: 424 VIIATAYIVEPTSANNLQSPAQGIS 448


>gi|312621080|ref|YP_003993808.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Photobacterium damselae subsp. damselae]
 gi|311872801|emb|CBX86892.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Photobacterium damselae subsp. damselae]
          Length = 438

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 115/426 (26%), Positives = 192/426 (45%), Gaps = 38/426 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +I+I  V       +++       + V  ++  V +SDP  AD  V     + +FGK +G
Sbjct: 9   IISIYSVIASAESLLNLSEGDAATVPVDTEIDSVFISDPAIADYQVIDKNKVVIFGKKIG 68

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             N+ +  ++G ++ N  +++ + +  ++  +     D+NI +    + VVL G V   Q
Sbjct: 69  HTNLFIFDNEGNELANRKVIVNKSLREIKQYISIKFPDANIDIFNFGEQVVLSGTVSNEQ 128

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKV 200
                  +  T LS+   +   N  +                 ++N + +    QV +K+
Sbjct: 129 VKDEINNIVGTLLSKKSNDFNFNLETDDQDYEVQFMKQKHFTGLVNNIEVLATRQVNVKL 188

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           +IAEV    L+QIG Q++  G + G   +   +F                       +V+
Sbjct: 189 SIAEVSHSFLEQIGVQYNSIGHAPGVFVNPLTNFSAS-----------------DILSVI 231

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            A+      + LAEP L+ ISG+SASF  GG+    T+  +   T+VT  ++GV L    
Sbjct: 232 TAIGNDGIGQVLAEPNLSVISGESASFLVGGELPVVTIVDNG--TNVTYKEFGVKLELLA 289

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            V    +I L +  EVS      +    D+P+ + R+A TTVEL  G + VL GLL  + 
Sbjct: 290 KVRKDDKITLSLMPEVSSLDTQYSNDKYDLPALKTRRARTTVELGDGQSFVLGGLLSTED 349

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++    +P +  IP+LGALFRNSR  R +TE+ I AT  LV+P+    +  P        
Sbjct: 350 KERLNKVPYIGDIPVLGALFRNSRTERNKTELIIVATVNLVQPIHPSQVQLPT--IRKTT 407

Query: 439 DAKAFF 444
               FF
Sbjct: 408 TLDRFF 413


>gi|56477528|ref|YP_159117.1| outer membrane channel protein [Aromatoleum aromaticum EbN1]
 gi|56313571|emb|CAI08216.1| probable outer membrane channel protein,probably involved in pilus
           assembly [Aromatoleum aromaticum EbN1]
          Length = 566

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 127/535 (23%), Positives = 217/535 (40%), Gaps = 91/535 (17%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---- 77
           + +  P +  A         VEI     ++I + K  +++  V V  +L+ +P  A    
Sbjct: 35  TSSATPRVAVATTNGSPCGRVEIAPM--VTIPVGKSSVIRPEVPVTRILLGNPDNAQAAR 92

Query: 78  ---------------------------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
                                      DV++ SP  +YL GK+VG  NV+L+   G    
Sbjct: 93  PSAEPAKDDKGGQQAKQSDGRPGVAQVDVLLLSPNEIYLLGKSVGSTNVVLVDRSGGC-T 151

Query: 111 NLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            LD+ +  D+  ++  L   + D   I+V    D++VL G V       RAVE++  ++ 
Sbjct: 152 ALDVTVAMDVTSVQGALTALLPDETGIKVSSAYDSLVLTGTVSDATKVDRAVEIASAYVR 211

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------------ 217
                +   ++  +V+N+L++    QV L+V +AEV + ++ + G               
Sbjct: 212 DGDGGENGRNA--RVLNMLSVGAPQQVMLEVKVAEVSKAVMDRFGIDFSRAYAAGDGTMI 269

Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-------------- 260
              S       P     +   G  V  G   S+       +    +              
Sbjct: 270 RFLSGVFGGKSPVGGQVSGTVGARVGGGIVDSISNASGTSAITAPIGDATIGGDATKVPL 329

Query: 261 -----------HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
                       A +    ++ LAEPT+ AISGQ  SF +GG+       +  G  +V  
Sbjct: 330 ISGSNSTLIGVDAQKSDGLVKILAEPTVMAISGQEGSFLAGGKIFIPVSQNDGGTRTVTL 389

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADT 358
              ++GV + FTPTVL  GRI L ++ EVSE                  +PS+  R+A T
Sbjct: 390 EEKEFGVSVKFTPTVLEGGRINLAVRPEVSELNREGVGLTAPGVNGLAILPSFTTRRAFT 449

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TV+L  G +  + GL+K++     +  P L ++P++GALFR++ F  + +E+    TP L
Sbjct: 450 TVQLRDGQSFAIGGLIKNNTTTNIKAFPFLGELPVIGALFRSTEFQTDRSELVFVITPRL 509

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE--ASEVEGQNYKGAIGF 471
           VKP+   D + P D+Y     +   +  ++             + G+      GF
Sbjct: 510 VKPL-PEDYALPTDNYVEPSRSDVIWRGKLEGKGPAPADHPDLLPGEENSARGGF 563


>gi|167836689|ref|ZP_02463572.1| RhcC2 [Burkholderia thailandensis MSMB43]
          Length = 460

 Score =  278 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 128/486 (26%), Positives = 223/486 (45%), Gaps = 43/486 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R    T  T+    L    P                         G  +++      +L
Sbjct: 5   LRADLHTCMTIACAALVGFVPGA----------------HVHADPVGPVLTVAAGGGEML 48

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           ++P     V ++DP  ADV V +P+++++ GK  G   +  +G + + +L   I++  D 
Sbjct: 49  KLPEPAGAVFIADPDVADVHVPTPQSVFVLGKKAGTTTLFALGSNNRTILRETIVVNADT 108

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             L+  L     + ++ +     ++++ G V +  D+   V+  + +L +          
Sbjct: 109 PTLQRILDARFPNLHLTLTSAPGSLMVAGHVPSPSDADAVVQTLKPYLHEK--------- 159

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAAD 233
            + ++N + +A   QV L+V + E+ R+I +Q+G   S  G+S             F   
Sbjct: 160 -ETLVNRMTLARPIQVHLRVRVTEIDRNITQQLGINWSAIGASGNFVGGLFNGRTLFDPT 218

Query: 234 FGGKFVSEGGDFSVKGVL--DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                +S  G FSV G     R+S + VL AL++   I  LAEP LT +SG++ASF +GG
Sbjct: 219 SRLFNLSPTGAFSVLGGFHTSRYSVDGVLDALDQEGLITMLAEPNLTTMSGETASFLAGG 278

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGD 347
           +        +TGA ++    +GV L FTPTVL+  RI L+++ EVSE      +  N   
Sbjct: 279 EFPIPVSQDTTGAITIEFKPFGVSLDFTPTVLADNRISLKVRPEVSEIDPVNSVTSNGIR 338

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+  VR+ +TTVEL SG +  + GLL+     +   +P L+++P+LG LF +  +  ++
Sbjct: 339 VPALTVRRVETTVELSSGQSFAIGGLLQSKTSDVLAELPGLARLPVLGKLFSSKNYLNDK 398

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           TE+ +  TP++V+PV   +L    D  +       +   R   I         +     G
Sbjct: 399 TEVVVIVTPYVVQPVGPGELRDALDSVTQPSSDIEYVLQRAIGIDPLSG----DLPRLVG 454

Query: 468 AIGFIY 473
           A GFIY
Sbjct: 455 AAGFIY 460


>gi|307293450|ref|ZP_07573296.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306881516|gb|EFN12732.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 499

 Score =  277 bits (707), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 118/428 (27%), Positives = 203/428 (47%), Gaps = 26/428 (6%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            I + +    ++ +P  + DV++ DP   DV V S   +YL  K  G+  V     +GK 
Sbjct: 46  AILLSVGGSKVINLPAKMSDVVIGDPDVVDVHVRSQNQLYLIAKKAGETTVFATAINGKV 105

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           + +  + +  ++  ++  L+  + ++ I V  ++  V+L G +   +D+  A  L++ F+
Sbjct: 106 LFSGTVRVGNNLTSIDDMLKLAMPNAEIAVNKMNGMVLLTGTIAAPEDAAEAERLTQAFV 165

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------- 221
            +             V++ L  A   QV L+V IAEV +D+  +IG              
Sbjct: 166 GKEVT----------VVSRLRTATPLQVNLQVKIAEVSKDVGHKIGMNWKSQDLTGGKWA 215

Query: 222 ------SSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 +    + +        F ++GG   +    +       VL   E +    TLA+
Sbjct: 216 GGIGGGTRDAITFNSGGGGTFNFTADGGYSLAGVARVLGLDLGAVLDLAESSGLATTLAQ 275

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LT++SG++ASF +GG++ Y   + + G  S+    YGV L FTPTVL+ GRI LR++ 
Sbjct: 276 PNLTSLSGETASFLAGGEYPYTVSNGTQG-NSIEFKQYGVQLAFTPTVLADGRISLRVRP 334

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V   +    +  +P+ R R A+TTVEL SG   ++AGLL +D       +P +  +PIL
Sbjct: 335 TV-SSLDFSVSSSVPALRSRTAETTVELGSGQAFMIAGLLNNDTANNINKVPGIGNLPIL 393

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           G+LF++  F R ETE+ I  TP+LVKP+   D+  P D +   ++ +  F  +       
Sbjct: 394 GSLFKSRNFQRHETELVIVVTPYLVKPMNASDVRLPTDGFRNANEGQGLFLQQGQDGVSG 453

Query: 455 KEASEVEG 462
             +     
Sbjct: 454 ARSPMPSR 461


>gi|123443821|ref|YP_001007792.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090782|emb|CAL13664.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 453

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/417 (25%), Positives = 192/417 (46%), Gaps = 33/417 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              + + +   +  +++   ++  V VS    AD  +    ++ ++ K  G A  IL   
Sbjct: 30  ANAEPVYLSTGESYMIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQ 89

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +   +    IL++  I      +R    +S+I +  + D+ +L G V T +  +    + 
Sbjct: 90  NHHPIKKSAILVDNTITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASII 149

Query: 165 ETFLSQSGRNQYANSSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              +         +                 +V+N + + G +QV +K+TIAEV +D  +
Sbjct: 150 GEAIGSEKTIASNSKKDSDGNSQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSE 209

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
            IG   S  G+ SG  + F  +   KF ++G                ++HA+   +  R 
Sbjct: 210 NIGMDWSTIGNFSGSFQFFKPNGLNKFNAKG-------------ISALVHAINDDSIARV 256

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP L+ +SG+SASF  GG+     V+++  +T +T   +G+ L+    V +  RI ++
Sbjct: 257 LAEPNLSVLSGESASFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIK 314

Query: 332 IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  EVS              PS+R RKA TT+EL  G + +L GL+    ++  + IP +
Sbjct: 315 LDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFI 374

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
             IPILGA FRN+   + +TE+ + AT  LV+PV+ +++  P  ++      + FF 
Sbjct: 375 GDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 429


>gi|194335913|ref|YP_002017707.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308390|gb|ACF43090.1| type II and III secretion system protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 510

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 106/502 (21%), Positives = 197/502 (39%), Gaps = 66/502 (13%)

Query: 9   FTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
            + +   L  + P  ++A   P++  + + + +          + + L +  + +    +
Sbjct: 15  MSALVALLVGTVPMATMASPEPVRRRDDSYVTVVSEMTAPSIYL-VPLGESRVYRFAQPI 73

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + V + DP  AD ++ +   +YL GK +G  N+ +   +G  + +  + + R    L+  
Sbjct: 74  KRVAMGDPKVADYIMLNRFEVYLLGKKMGSTNLAVWDQNGN-LTSSPVQVSRGTTALQAL 132

Query: 127 LRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180
           L+      N I +  +   +VL G V     ++    L  ++   S  +    S+     
Sbjct: 133 LKVLFPKENDIHLLALGPALVLSGSVSDALVAESVARLVRSYFGGSVSSGTPESALVGTD 192

Query: 181 ------------------------------------SKKVMNLLNIAGEDQVTLKVTIAE 204
                                               ++ V+NLL +    QV L+V IA+
Sbjct: 193 SKPFTGIIEEMSKDVVFSKTESHSKETTTHGGESDSTRGVVNLLKVRDSQQVRLEVCIAQ 252

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V R  ++ +G                 +     FVS     ++       +    + A  
Sbjct: 253 VSRTFIESLGISFF-----KTSGDIQGSTLLSGFVSNATLNNLLLGRLGQANGIKMVADR 307

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD----------YGV 314
           + +  + LAEPT+  +SG+   F  GG+             ++  +D          YGV
Sbjct: 308 KPSLFKVLAEPTIVTMSGKEGFFLVGGKIYVPVRVIDYSPINLQEYDKYYISYKEYLYGV 367

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVL 370
            L F P VL  GRI L++ +EVSEP            +P +++    T V++  G  +V+
Sbjct: 368 GLRFMPVVLDAGRISLKVVSEVSEPDTESATSGTKANLPLFKISTVSTNVQMNEGENLVI 427

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            GL  D+     + +PLLS+IPILGALFR+++ N E+TE+ +   P LVK  +      P
Sbjct: 428 GGLKLDNFANAIDSVPLLSEIPILGALFRDTKKNAEKTELMVIIRPTLVK-GSATMPELP 486

Query: 431 DDHYSVEDDAKAFFFNRVNKIY 452
            D        + F   ++    
Sbjct: 487 TDRVIPPTRKELFLDGKLEGSP 508


>gi|330876206|gb|EGH10355.1| type III secretion component [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 437

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 31  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 91  EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S       G    +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 201 TFSFGLLTGGGLAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319

Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 320 TSTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D                         
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKARVVATPLDKQRAAS------------------- 420

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 421 TASAGPRSGGAFGFYM 436


>gi|330953268|gb|EGH53528.1| type III secretion component [Pseudomonas syringae Cit 7]
          Length = 438

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 127/463 (27%), Positives = 205/463 (44%), Gaps = 37/463 (7%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +S   +  L       A   N   +  G    + + + +  +L     V  V+V++P  A
Sbjct: 5   ASVIRLLFLALSALLIAGGANAETIAKGAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIA 64

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           D+ V SP  +Y+FGK  GQ ++I +  +G++   L + +    A +   L+     S  R
Sbjct: 65  DLQVVSPGVIYVFGKTAGQTSLIALDSEGRETATLSLAVSSGTAAVSRPLKALHPQSQAR 124

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           +      V+  G V+ + ++     L                + +  +N    AG  QV 
Sbjct: 125 INASGSRVIASGAVQDVGEATDLNAL----------LSTEGQNFQSTVNSATYAGSAQVN 174

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---FSVKGVLDRF 254
           ++V  AEV R  L + G   +   ++   S            +  G     S        
Sbjct: 175 IRVRFAEVSRSELLRYGVNWNALFNNGTFSFGLLTGGSLAADAASGASNVISAGLTSGNV 234

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           + + +L AL+    +  LAEP +TA++GQ+ASF +GG+ +   V  +     +    YGV
Sbjct: 235 NIDAMLEALQNNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNREVVGIEYKPYGV 293

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVL 370
            L F+PT+L  GRI L+++ EVS  +       N   +PS+RVR+ADT VE+ SG T  +
Sbjct: 294 SLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAI 353

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL + +  Q  + +P+L  +PILG+LFR+ RF R ETE+ I  TP+LV+PV  R  + P
Sbjct: 354 AGLFQRESSQDMDKVPMLGDMPILGSLFRSKRFQRNETELVILITPYLVEPVKERVAATP 413

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
            D                         +   G    GA GF  
Sbjct: 414 LDKQRAAS-------------------TAAAGPRSGGAFGFYM 437


>gi|253701800|ref|YP_003022989.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776650|gb|ACT19231.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 451

 Score =  276 bits (705), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 109/431 (25%), Positives = 182/431 (42%), Gaps = 47/431 (10%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ++ +N+ ++L +    + V ++D    DV        + + GK +G  N+I+   + +  
Sbjct: 33  TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNENP 92

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              D+ +  D   +E  +R +  + +I V+   DTVVL G V      ++A E+++ + +
Sbjct: 93  TFFDVRVVGDREAIESQIRDYAPNDDISVQYAQDTVVLSGKVANEMTGKKAEEIAKAYSA 152

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                        KV+N + +    QV L+V +A+V R  LK++G    + G ++    +
Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGISAMVKGRTAEGFMN 199

Query: 230 FAADFGGKFVSEGGD---------------------------FSVKGVLDRFSFETVLHA 262
                 G                                   F+V           VL A
Sbjct: 200 LVGAPSGTSSVTNSSATRFTSTEASGIAGSIPGLGSFDPLDAFNVGVSYFPAGIGAVLQA 259

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320
           L      + LAEP L   SG+  +F +G +  Y  + S+ G   +S+     GV L F P
Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIIFETVGVKLKFKP 319

Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            VL  G I L+I   EVS     +     P    R   T VEL  G +++LAGLL+++  
Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLILAGLLQEEQI 379

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438
           +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP         P D  +  +
Sbjct: 380 KTMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPAE 439

Query: 439 DAKAFF--FNR 447
           +    +    R
Sbjct: 440 EKGYDWIPLGR 450


>gi|289624387|ref|ZP_06457341.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289646614|ref|ZP_06477957.1| type III secretion component, putative [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330868629|gb|EGH03338.1| type III secretion component [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 429

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 23  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 83  EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311

Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D                         
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 413 TASAGPRSGGAFGFYM 428


>gi|330985203|gb|EGH83306.1| type III secretion component [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 429

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 121/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     +  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 23  GAKGTVDLAIGEGRVLHFSAPLDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 83  EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311

Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 371

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D                         
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 413 TASAGPRSGGAFGFYM 428


>gi|87308911|ref|ZP_01091049.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
 gi|87288254|gb|EAQ80150.1| probable type II secretion system protein [Blastopirellula marina
           DSM 3645]
          Length = 540

 Score =  275 bits (704), Expect = 8e-72,   Method: Composition-based stats.
 Identities = 114/497 (22%), Positives = 205/497 (41%), Gaps = 55/497 (11%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK----------- 49
           MR L     T +++ L +   +  +   I  A   +  +S       +K           
Sbjct: 3   MRNLSTALAT-LAMILSAGGIAFGQAQEILPAPNQLEQLSSPNAATLQKQFDLIDEVLEP 61

Query: 50  ---ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GH 104
               S+  ++  I++    V  V +++P   +V   SP  M + G  VGQ  + L     
Sbjct: 62  ELIFSLMTSQSKIVRTKSPVFRVAITNPAVVEVNEFSPTEMEVIGSAVGQTTMTLWFNNA 121

Query: 105 DGKQ--------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           DG          + N D   + +   L+  +      S +++  ++D +++ G  R  ++
Sbjct: 122 DGTVSTLRYLIIVSNDDNRADLEYGKLQAHINEMFPYSRVQLFPIADKLIVRGQARDSKE 181

Query: 157 SQRAVELSETFLSQSGRNQYANSS----------------SKKVMNLLNIAGEDQVTLKV 200
           +   + +          N   + +                +  ++NLL + GE QV LKV
Sbjct: 182 AAEILAVIGDQAVNQNGNISGSGTVNVGSVARLPDAEDLETTSLINLLEVPGEQQVMLKV 241

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            +AE+ R   +++G   S+   S   + +            GG  ++  +LD    E  +
Sbjct: 242 RVAELSRQAARELGMDFSVMEESFSIAHTIM----------GGAGNLSAILDGGDVELFI 291

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318
            A     + + LAEPTL  +SGQSASF +GG+            GA S +   +G  + F
Sbjct: 292 RAFSSNGSAKILAEPTLMTLSGQSASFIAGGEFAVPTAVGVGGIGAVSTSFRGFGTQVQF 351

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            PTV+    I L +   VS     ++   +P   +R A TTV+L  G  + +AGL++D+ 
Sbjct: 352 MPTVMDKDMIRLSVAPSVSSINQSLSVDGVPGLDIRGAVTTVDLREGQWLAIAGLIQDEQ 411

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSV 436
           +  +  +PLL  IP +GA F +    R ETE+ I  +P LV P+    +    P    + 
Sbjct: 412 EASRSRLPLLGDIPYVGAAFGSQTTKRIETELVILVSPELVHPMERDQVPLYLPGMEVTE 471

Query: 437 EDDAKAFFFNRVNKIYG 453
             + + F   ++  + G
Sbjct: 472 PTNKEFFLHQQIEGLPG 488


>gi|197106489|ref|YP_002131866.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
 gi|196479909|gb|ACG79437.1| Flp pilus assembly protein, secretin CpaC [Phenylobacterium
           zucineum HLK1]
          Length = 438

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/424 (24%), Positives = 179/424 (42%), Gaps = 21/424 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
             E    + I +  +K +  ++      ++VS P  A V   S R+ Y+ G   G  N++
Sbjct: 31  RSEPAPRRSIHVPRDKSLSFRLAQPAARIVVSQPEIAKVTATSDRSFYVQGLEFGSTNML 90

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           + G  G+ +  LDI +  D   L+  L     +  +RV  + + ++L G V       +A
Sbjct: 91  VYGPGGRLLEVLDIRVGYDAEGLQQDLAAAFPNEPLRVRNLGEALMLTGEVTDTGVQYKA 150

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +++ +            +   +++ +++    QV L+V + E  R  L+ IG + +I 
Sbjct: 151 EAIAQRY------------APDGLISRVSVRASQQVVLEVRVLEATRSALQDIGVEGAIG 198

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            +S   +     +         G   + G       + +L ALE    +RTLA P L AI
Sbjct: 199 NNSWAVAFG---NGLIGASPAAGALGISGGWGDTRIDLMLTALEEKGVVRTLARPNLVAI 255

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            GQ A+F +GG++ Y  V       S+    YGV L FTP V   G I L ++ EVS+  
Sbjct: 256 PGQKATFHAGGEYPYP-VPQRDDLISLEFRKYGVELTFTPVVQDNGLIRLDVEPEVSQLD 314

Query: 341 IGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              +       +P   VR+  TTVEL  G ++ + GL + +       +P +  +P+LG+
Sbjct: 315 FTNSLRVQGFTVPGLIVRRTHTTVELKPGESLAIGGLFQREYTNALRQVPGIGDVPVLGS 374

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPK 455
           LFR++R+ + ETE+ +  TP            +                  R       +
Sbjct: 375 LFRSARWKKAETELVVIVTPKFASTADMAAAEAMRTPPGREPTTPDLLLRGRALDKSITE 434

Query: 456 EASE 459
           E + 
Sbjct: 435 EGAP 438


>gi|320324504|gb|EFW80581.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320328376|gb|EFW84379.1| type III secretion component, putative [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 429

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 122/436 (27%), Positives = 197/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FG+  GQ ++I +  
Sbjct: 23  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 83  DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 252

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 253 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 311

Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 312 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNL 371

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D                         
Sbjct: 372 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 412

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 413 TASAGPRSGGAFGFYM 428


>gi|284048526|ref|YP_003398865.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952747|gb|ADB47550.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 590

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 98/461 (21%), Positives = 189/461 (40%), Gaps = 31/461 (6%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
            A I     +      +S+ +N    ++    +  + V +P  ADV + S     L GK 
Sbjct: 13  TAAILGMTGQALAATTLSVAVNGSRYMEASG-ITRLAVGNPEIADVRLLSGNDFLLVGKK 71

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   +++   +G++    ++ +    A     ++  I    ++V+M++  V+L G V+ 
Sbjct: 72  PGSTTLLVWSDNGRE--EYNVFVSGSDAGTAQAIQEAIGYPEVQVQMMNGKVLLRGRVQN 129

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKV 200
             +   A+++++ +L   G       +  K             ++++L++    QV L  
Sbjct: 130 QYEHDSAIKVAQMYLGSGGGTTSTAQAGGKEGTAAQGGTTDSNIIDMLDMTEPTQVRLVA 189

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRF- 254
            I E+     K +G Q+         + +  +        G F +    +  +G    F 
Sbjct: 190 QIIEINTSAEKDLGIQYWSPTLGDNTTGNSNSTDITRGTPGLFYAGENFYKQRGSFGWFG 249

Query: 255 ----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
               +    L AL  +   R L+ P++T +SGQ A    GG+      S+  G  ++   
Sbjct: 250 SHLSNLNASLQALVTSGKARILSRPSITTMSGQKAKILIGGRIPIP-TSAGDGQIAIDWR 308

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGG 366
           DYGV L   P V +  +I  ++  EVS    G     N   +P+   R+A+  + + SG 
Sbjct: 309 DYGVKLDIEPVVDADNKITSKVHAEVSTLDYGHSVKENDFSIPAIASREAEAMINVRSGM 368

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T+ + GLL  +  +    IPLL  IPI+G  FR++   R+  E+ I  TP LV   +   
Sbjct: 369 TMAIGGLLNSEDSKSVSKIPLLGDIPIIGQFFRHTSTTRDNRELLILITPLLVGDDSPVS 428

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           +S+         +       +V+     K  ++ + ++  G
Sbjct: 429 MSQRMKENYEASERYERNAEKVDVNTPVKPGNDKQERDIWG 469


>gi|50119734|ref|YP_048901.1| hypothetical protein ECA0789 [Pectobacterium atrosepticum SCRI1043]
 gi|49610260|emb|CAG73703.1| putative membrane protein [Pectobacterium atrosepticum SCRI1043]
          Length = 478

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 124/452 (27%), Positives = 219/452 (48%), Gaps = 27/452 (5%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   +++  LF++   V     +  A    +     E+ +   + + +++  +LQ+    
Sbjct: 15  TCKRLLAAGLFNAVLPVTLTTMMLPA--TTMAAGVSEVAETNVVHLTVHQGRLLQLDALP 72

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L   
Sbjct: 73  DSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKALGER 132

Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN----------- 174
           ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S              
Sbjct: 133 MKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASAGGQGGGGGGGEKL 192

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
             ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+   + S  +  
Sbjct: 193 PGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAGSGS 252

Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                +           S      R     +L A+ +      LAEP LTA+SG++A+F 
Sbjct: 253 RLNLFNATTGRFANPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 312

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
           +GG+     +  +  + S+    YGV+L  TPT+LS  RI L I  EVSE     +    
Sbjct: 313 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 370

Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +   
Sbjct: 371 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFESEST 430

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           ++EETE+ I AT ++V+PV   DL  P     
Sbjct: 431 SQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462


>gi|197117446|ref|YP_002137873.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197086806|gb|ACH38077.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 451

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 113/429 (26%), Positives = 187/429 (43%), Gaps = 45/429 (10%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           ++ +N+ ++L +    + V ++D    DV        + + GK +G  N+I+   +  + 
Sbjct: 33  TVIVNRGVVLNLKNPARYVNITDKDVIDVPDPLRRNQLLINGKKIGSTNLIVWEENNDKP 92

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              D+ +  D   +E  +R +    +I V+   DTV+L G V      ++A E+++ + +
Sbjct: 93  TFFDVRVVGDREAIESQIRDYAPKDDISVQYAQDTVILSGKVANEMTGKKAEEIAKAYSA 152

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                        KV+N + +    QV L+V +A+V R  LK++G    + G ++    +
Sbjct: 153 -------------KVLNHITVDEPQQVLLQVKVAQVDRTSLKRLGLSAIVKGRTAEGFTN 199

Query: 230 FAADFGGK----------FVSEGGDFSVKGVLDRFSFE-----------------TVLHA 262
                 G           F S  G+  V  +     F+                  VL A
Sbjct: 200 LVGAPSGTSRNTESTPTRFTSTEGNGIVGNIPGIGGFDPLNAFNVGVSYFPAGIGAVLQA 259

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTP 320
           L      + LAEP L   SG+  +F +G +  Y  + S+ G   +S+     GV L F P
Sbjct: 260 LSSKGLAKILAEPNLLVKSGEEGNFLAGSRIPYSVLISTGGASTSSIVFETVGVKLKFKP 319

Query: 321 TVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            VL  G I L+I   EVS     +     P    R   T VEL  G ++VLAGLL+++  
Sbjct: 320 QVLQNGLINLKIDPAEVSSIAGTLAVNGYPIIDTRDVRTDVELRDGESLVLAGLLQEEQI 379

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED 438
           +    IPLL  IPILGALFR+S+ +  E ++    TP +VKP         P D  + E+
Sbjct: 380 KNMSKIPLLGDIPILGALFRSSQKDIREKDLVFFITPKIVKPTPAGVATKLPTDAVTPEE 439

Query: 439 DAKAFFFNR 447
           +    +  R
Sbjct: 440 EKGYDWIPR 448


>gi|253687068|ref|YP_003016258.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753646|gb|ACT11722.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 478

 Score =  275 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/455 (27%), Positives = 220/455 (48%), Gaps = 27/455 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            + T   +++  LF++   V     +  A      +S   I    ++ + +N+  +LQ+ 
Sbjct: 12  FRGTCKRLLAACLFNAVLPVTLTTMMLPATTLAAGVSTAPI--TDEVHLTVNQGRLLQLA 69

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L
Sbjct: 70  DTPDSVLVADPNIASFELPSPGNLFVYAKSVGVTTLYAMDENGNVINAIRLVSEHDLKAL 129

Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174
              ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S           
Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGQGGGGGGG 189

Query: 175 ---QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+   + S  
Sbjct: 190 EKLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMSAG 249

Query: 232 ADFGGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           +       +           S      R     +L A+ +      LAEP LTA+SG++A
Sbjct: 250 SGSRLNLFNATTGRFSNPTDSGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGETA 309

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
           +F +GG+     +  +  + S+    YGV+L  TPT+LS  RI L I  EVSE     + 
Sbjct: 310 AFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSV 367

Query: 345 ----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF +
Sbjct: 368 QLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFES 427

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
              ++EETE+ I AT ++V+PV   DL  P     
Sbjct: 428 EATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 462


>gi|145299828|ref|YP_001142669.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142852600|gb|ABO90921.1| flp pilus assembly protein FlpC [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 461

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V+D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 14  AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 73

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 74  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 133

Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
            F          +                             V+N L +AG DQ+ + V 
Sbjct: 134 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 193

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 194 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 249

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 250 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 308

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 309 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 368

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P      LS P DHY  
Sbjct: 369 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 428

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 429 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 461


>gi|251789646|ref|YP_003004367.1| type II and III secretion system protein [Dickeya zeae Ech1591]
 gi|247538267|gb|ACT06888.1| type II and III secretion system protein [Dickeya zeae Ech1591]
          Length = 474

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 124/432 (28%), Positives = 209/432 (48%), Gaps = 32/432 (7%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           +   +   +  +I    +I + +N+  +LQ+      VL++DP  A   + SP  +++F 
Sbjct: 27  SATTLPVAAVTQIEATSEIRLNINQGRMLQLDHIPDSVLIADPAIASFELPSPGNVFVFA 86

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGM 150
           K VG   +  +  DG+ +  + +++E D+  L+  LRR   D+ I++E  V + V++ G 
Sbjct: 87  KGVGNTTLYAMDVDGQVVSAIHLVVEHDLDALKERLRREFPDAQIQLEASVPNGVIVRGS 146

Query: 151 VRTIQDSQRAVELSETFLSQSGRN--------------QYANSSSKKVMNLLNIAGEDQV 196
           V T QD+++ ++  + ++  S  +                ++S+S  V+N L +    Q+
Sbjct: 147 VETPQDAKKVIDSVQAWVGASASSRGSAGGGGGGGSAMPASSSTSPNVVNQLKVRTPSQI 206

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----------FS 246
            ++V + EV R +  ++GF    + +    +  F +     F S   +            
Sbjct: 207 NIRVRVVEVSRKLTHELGFNWDSSLNRGRNTIGFGSGALSNFFSATSNTFSREAGSASLG 266

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   S  T+L AL        LAEP LTA+SG++A+F +GG+     +  +  + S
Sbjct: 267 YNYTGSDGSLGTLLSALNSQGMASVLAEPNLTAMSGETAAFAAGGEVPIVLI--TGNSVS 324

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVE 361
           +    YGV+L  TPT+LS  RI L I  EVSE     +        +P+  VR+ADTTVE
Sbjct: 325 IDYKSYGVILRMTPTLLSANRISLHIAPEVSELTSVGSVQLEGGSTIPALTVRRADTTVE 384

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L SG +  LAG+L+    Q   G+P LS IP+LG  F     + EETE+ I AT ++V P
Sbjct: 385 LASGQSFALAGMLRSSNSQTVAGVPGLSGIPLLGRAFERESTSSEETELVIIATAYVVAP 444

Query: 422 VAMRDLSRPDDH 433
           V+   L  P   
Sbjct: 445 VSAGTLQTPGQG 456


>gi|148259497|ref|YP_001233624.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
 gi|146401178|gb|ABQ29705.1| type II and III secretion system protein [Acidiphilium cryptum
           JF-5]
          Length = 491

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 123/466 (26%), Positives = 194/466 (41%), Gaps = 37/466 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P   + A    +   E  + + ++I      ++ +     +V V+DP    V   S  T+
Sbjct: 44  PAAASPARHATMRPAEAARARGLTIEQGSGRLITLKGSAANVFVADPGVVAVRPASAHTL 103

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDT 144
           ++FG   G   V +    G  +  L + +       A +     R    + + +   ++ 
Sbjct: 104 FVFGTAPGFTTVAVTDAQGHAVATLHVAVTPKTYPAAAIRAGATRSAPGARLSISSAANG 163

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           VV+ G V T     + ++ +                  KV+N   +    QV LKV IA+
Sbjct: 164 VVVRGNVPTPVQDYQIMQQAHLIAGTGA----------KVVNQTEVRLPQQVALKVRIAQ 213

Query: 205 VRRDILKQIGFQHSITGSS-------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + R I +Q+G      G+         G S     +         G ++    +   + +
Sbjct: 214 MSRTITQQLGINWQSAGNGISVGKFLFGFSALDVLNGSSPATPAAGSYNAGLSVGGGAID 273

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           +VL AL        LAEPTLTA+SGQSASF  GG      V    G  +V    +GV L 
Sbjct: 274 SVLDALNSDNLAHILAEPTLTALSGQSASFIDGGSFPVP-VPGQNGQVTVQYKKFGVQLK 332

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADTTVELPSGGTIV 369
           F P VL  G I L +Q  VS P             +  +PS   + A TTV + SG T+ 
Sbjct: 333 FRPVVLDNGSIILHVQPTVSSPTTQNAFQIAVAGTSIVVPSLSTQSASTTVVIGSGQTLA 392

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLS 428
           +AGLL +   Q  + +P L  +P+LGA FR+  +NR+E E+ I  TP+LVKPV     L 
Sbjct: 393 IAGLLSNSSNQTDKSVPGLGDMPVLGAAFRDDNYNRQEQELVILVTPYLVKPVNNAGQLM 452

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
            PD+ +S  +  +    +R +     +           G  GFI +
Sbjct: 453 TPDEGWSPPNQIQRIVLHRDSGGARREIVLP-------GQAGFILR 491


>gi|261820214|ref|YP_003258320.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
 gi|261604227|gb|ACX86713.1| type II and III secretion system protein [Pectobacterium wasabiae
           WPP163]
          Length = 475

 Score =  274 bits (700), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 126/452 (27%), Positives = 217/452 (48%), Gaps = 30/452 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   ++   LF++   V  + P     A V            ++ + +++  +L +    
Sbjct: 15  TCKRLLIASLFNAVLPVMLMSPAATQAAGV-----SVAPVTDEVHLTVHQGRLLHLDALP 69

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             VLV+DP  A   + SP  ++++ KNVG   +  +  +GK +  + ++ E D+  L   
Sbjct: 70  DSVLVADPNIASFELPSPGNLFVYAKNVGTTTLYAMDENGKVINAIRLVSEHDLKALSER 129

Query: 127 LRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ---------- 175
           ++R    ++I++E  +   V++ G V T QD++R ++  +T+++ S              
Sbjct: 130 IKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQTYINASSNGAQGGGGGGDQL 189

Query: 176 -YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
             ++ +S KV+N L I    Q+ ++V + EV R +  ++GF  + + S+   + +  +  
Sbjct: 190 PGSSETSGKVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTAGSGS 249

Query: 235 GGKFVSEGGD------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                +           S      R     +L A+ +      LAEP LTA+SG++A+F 
Sbjct: 250 RLNLFNATTGRFANPTDSGFLNFGRSRLGGLLTAMNQQGMATVLAEPNLTAMSGETAAFA 309

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---- 344
           +GG+     +  +  + S+    YGV+L  TPT+LS  RI L I  EVSE     +    
Sbjct: 310 AGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGSVQLE 367

Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS IP+ G LF +   
Sbjct: 368 GGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSGIPMFGRLFESEST 427

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           N EETE+ I AT ++V+PV   DL  P     
Sbjct: 428 NHEETELVIIATAYVVEPVNAGDLQTPGQGIR 459


>gi|71733713|ref|YP_274717.1| type III secretion component [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554266|gb|AAZ33477.1| type III secretion component, putative [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 437

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/401 (29%), Positives = 191/401 (47%), Gaps = 18/401 (4%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 31  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 90

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 91  DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319

Query: 342 GV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 N   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 320 TTTLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D      
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS 420


>gi|149176581|ref|ZP_01855194.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
 gi|148844694|gb|EDL59044.1| putative outer membrane channel for pilus assembly CpaC
           [Planctomyces maris DSM 8797]
          Length = 590

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 118/471 (25%), Positives = 193/471 (40%), Gaps = 39/471 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R  +      +   L + +       P     +  +     E     K+ +      IL
Sbjct: 8   IRVKRLPVLVTLVCSLIALSAYAQDEQPAPPGASEPVVQVSSEKM---KLEVTEKFSKIL 64

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           + P  ++ V   DPT   V   +P  + +     G   +++   +GK +  L+  +  D 
Sbjct: 65  KFPGKIKRVDGFDPTVLSVSALTPNELRIQALVPGVTTLVITDENGK-VYTLETFVSGDA 123

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            HL+  LR     S++    V D+VVL G V   +     VE++E F             
Sbjct: 124 RHLQAYLRELFPTSSVTAIKVQDSVVLRGWVTEPEAITEMVEIAEQFF------------ 171

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------S 224
              V+N + +AG  QV LKV I EV+R  ++Q+G        S                +
Sbjct: 172 PNGVLNQMKLAGVQQVLLKVKIMEVQRSKIRQLGVNWLFLNQSGYAYSTPGTLVPITGIN 231

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            P     A    + +  G       V     F+  + AL++   ++ LAEP L   SG+ 
Sbjct: 232 VPFGGPPALTASQNLISGTSLGFGLVDGSSIFQAFIEALKKEALLKILAEPELVTTSGRP 291

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PV 340
           A+  SGG+     V  S G  ++   ++GV +   P VL  GR+ L +Q EVSE      
Sbjct: 292 ANLLSGGEFP-ILVPQSLGTVTIEWREFGVRMEAVPIVLGNGRLRLEVQPEVSERDFSNA 350

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + V    +P   VR+A+T VE+  G T+V+AGL+           P L ++P++GA FR 
Sbjct: 351 VQVAGTTVPGLTVRRANTAVEMNFGETMVIAGLISSRKTAETSKTPFLGELPVVGAAFRR 410

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
            R+   ETE+ I  TP LV P+    +    P    +   D + +    + 
Sbjct: 411 VRYTEGETELVIMVTPELVSPLKSGQVPPGGPGLFTATPTDRELYLDGVLE 461


>gi|330830432|ref|YP_004393384.1| protein transporter, outer membrane secretin (secretin) family
           [Aeromonas veronii B565]
 gi|328805568|gb|AEB50767.1| Protein transporter, outer bacterial membrane secretin (Secretin)
           family [Aeromonas veronii B565]
          Length = 465

 Score =  273 bits (699), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 115/469 (24%), Positives = 198/469 (42%), Gaps = 38/469 (8%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A ++ +  +     + +++   +  +L     V D  V++     V   S + + ++G+ 
Sbjct: 6   AILLAMLPLWAAAAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRK 65

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           VG  ++++   DG+ + +  + +  D+A LE   R+    S +        +V+ G V +
Sbjct: 66  VGHTDLVVTALDGRTLGHYRVTVVADLAPLEQLARQHFPQSRLTFSESGGAIVVAGEVTS 125

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSS------------------------SKKVMNLLN 189
              +   + + E F         A S+                           V+N L 
Sbjct: 126 PLQAHEILSMVEGFAKGLQPQSVAQSTVMAPSPQAGNQDEGAAVAGGGSGQYANVINQLR 185

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +AG DQ+ + V I E++R   +Q+G + S  G             G +F       S  G
Sbjct: 186 LAGSDQINISVRIVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPLERGSWTG 241

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
             D      ++ AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +  
Sbjct: 242 KKDVVYINAIIDALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEF 300

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSG 365
             +G+ L  TPT+L   RI L +  EVS    E  + +    +P    R+  TT+EL  G
Sbjct: 301 KKFGISLELTPTLLDNNRISLTVSPEVSTLSRENSVTIAGVVVPGIETRRTTTTIELADG 360

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AM 424
            +  LAGL++    Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P    
Sbjct: 361 QSFALAGLVRSHRNQNNEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDP 420

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
             LS P DHY      +  FF  +    G  ++   +     G  G+ Y
Sbjct: 421 LSLSTPLDHYRAPSRFERLFFTDM----GSTQSPAAQTTRLFGNYGYSY 465


>gi|149909547|ref|ZP_01898201.1| general secretion pathway protein D [Moritella sp. PE36]
 gi|149807452|gb|EDM67403.1| general secretion pathway protein D [Moritella sp. PE36]
          Length = 432

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 113/405 (27%), Positives = 189/405 (46%), Gaps = 38/405 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             K +++   +   ++   ++  V ++DP  AD  V     + +FGK +G  ++I+   +
Sbjct: 11  AQKIVNLSEGEAKTIKSIKEIASVFIADPEIADYQVIDANKVVVFGKKIGSTSIIVFDEN 70

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G  + N  ++I + + H++  ++    ++++ +  V D VVL G+V T Q+      +  
Sbjct: 71  GDTITNNKLVINKSLVHIQQQIQLKYPNADVTIYNVGDQVVLSGIVATEQEKDDINIIVG 130

Query: 166 TFLSQ---------SGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L++                    +         ++N + +A   QV +K++IAEV   
Sbjct: 131 ELLNKKSDDYIIQWESTGTDTKYEMEFMKRRHFAGIVNNIEVAAVKQVNVKLSIAEVSHS 190

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L+  G ++S  G +SG   +    F                       +V+ A+   + 
Sbjct: 191 FLENFGIEYSSIGQTSGTFVNLVTKFSAS-----------------DIASVITAIADDSV 233

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+SASF  GG+    TV   T  T+V   +YGV L     VL   +I
Sbjct: 234 GQILAEPNLSVISGESASFLVGGELPVVTVVDGT--TNVLYKEYGVRLSLMAKVLRDDKI 291

Query: 329 GLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L +  EVS  +        ++P+ + R+A TTVEL  G + VLAGLL  +  +  + IP
Sbjct: 292 ILSLSPEVSTLDNQYSSGTYNLPALKTRRARTTVELGDGQSFVLAGLLNTEDVESIKKIP 351

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            L  IPILGALFR+S   R +TE+ I AT  LVKP+    +  P 
Sbjct: 352 FLGDIPILGALFRSSSTQRNKTELIIVATVNLVKPIHASQVQLPT 396


>gi|298487093|ref|ZP_07005143.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298158336|gb|EFH99406.1| type II/III secretion system protein [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 437

 Score =  273 bits (698), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 124/436 (28%), Positives = 199/436 (45%), Gaps = 37/436 (8%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +G 
Sbjct: 31  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALGS 90

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 91  EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 149

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 150 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 200

Query: 225 GPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             S            +        S        + + +L AL+    +  LAEP +TA++
Sbjct: 201 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMT 260

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           GQ+ASF +GG+ +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  + 
Sbjct: 261 GQTASFLAGGE-VAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMS 319

Query: 342 G----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                VN   +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG L
Sbjct: 320 TITLDVNGYQVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNL 379

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           FR+ RF R ETE+ I  TP+LV+PV  R ++ P D                         
Sbjct: 380 FRSKRFQRNETELVILITPYLVEPVKDRVVATPLDKQRAAS------------------- 420

Query: 458 SEVEGQNYKGAIGFIY 473
           +   G    GA GF  
Sbjct: 421 TASAGPRSGGAFGFYM 436


>gi|88866586|gb|ABD57354.1| FlpC [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 479

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 112/457 (24%), Positives = 192/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V+D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 32  AAESLTLTPEQSTLLNFDEPVRDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTAQD 91

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 92  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLTFSESGGAIVVAGEVTSPLQAHEILAMVE 151

Query: 166 TFLSQSGRNQYANSS------------------------SKKVMNLLNIAGEDQVTLKVT 201
            F          +                             V+N L +AG DQ+ + V 
Sbjct: 152 AFAKGIQPQGVPSGPVAPAQPQSGNQDEGAAVAGGGSGQYANVINQLRLAGSDQINISVR 211

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 212 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 267

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 268 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 326

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 327 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 386

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P      LS P DHY  
Sbjct: 387 RNQSSEALPFLGEIPGLAPFFGSNSFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 446

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 447 PSRFERRFFTDM----GSTERPGAQATRLFGNYGYSY 479


>gi|227326302|ref|ZP_03830326.1| hypothetical protein PcarcW_02904 [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 479

 Score =  273 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 121/456 (26%), Positives = 216/456 (47%), Gaps = 28/456 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            + T   +++  LF++   V     +  A    +           ++ + +N+  +L + 
Sbjct: 12  FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVRLTVNQGRLLHLN 69

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L
Sbjct: 70  ALPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129

Query: 124 EMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-------- 174
              ++R    ++I++E  +   V++ G V T QD++R ++  + ++S S           
Sbjct: 130 GERMKREFPGADIQLEASIPSGVIVRGSVDTPQDAKRVIDSIQAYISASSGGGGQGGGGG 189

Query: 175 ----QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                 ++ SS KV+N L I    Q+ ++V + EV R +  ++GF  + + S+   + + 
Sbjct: 190 GERLPGSSESSGKVINQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249

Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            +       +                  R     +L A+ +      LAEP LTA+SG++
Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A+F +GG+     +  +  + S+    YGV+L  TPT+LS  RI L I  EVSE     +
Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367

Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF 
Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +   ++EETE+ I AT ++V+PV   DL  P     
Sbjct: 428 SESTSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463


>gi|117618977|ref|YP_855991.1| protein transporter, outer bacterial membrane secretin (secretin)
           family protein [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117560384|gb|ABK37332.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Aeromonas hydrophila subsp. hydrophila ATCC
           7966]
          Length = 465

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/457 (24%), Positives = 193/457 (42%), Gaps = 38/457 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++   +  +L     V D  V++     V   S + + ++G+ VG+ ++++   D
Sbjct: 18  AAESLTLTPEQSTLLNFDEPVLDAFVANSELVRVHSPSDQQLLIYGRKVGRTDLVVTALD 77

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ + +  + +  D+A L+   R+    S +        +V+ G V +   +   + + E
Sbjct: 78  GRTLGHYRVQVVADLAPLKQLARQHFPQSRLSFSESGGAIVVAGEVTSPLQAHEILTMVE 137

Query: 166 TFLSQSGRNQYANSSSKK------------------------VMNLLNIAGEDQVTLKVT 201
            F         A  ++                          V+N L +AG DQ+ + V 
Sbjct: 138 GFAKGIQPQGSALGTTAPVPPQTGSQDEGAAVAGGGSGQYAHVINQLRLAGSDQINISVR 197

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I E++R   +Q+G + S  G             G +F       S  G  D      ++ 
Sbjct: 198 IVEMQRTTSEQLGLRWSAMGEY----LQLGVSPGNRFPKPAERGSWGGKKDVVYINAIID 253

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL   + +  LAEP LTA SG++A+F SGG+  +   +   G   +    +G+ L  TPT
Sbjct: 254 ALVENSLVNVLAEPNLTAKSGEAATFMSGGEFPFPVGNGDNG-PEIEFKKFGISLELTPT 312

Query: 322 VLSPGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +L   RI L +  EVS    E  + +    +P    R+  TT+EL  G +  LAGL++  
Sbjct: 313 LLDNNRISLTVSPEVSTLSRENSVSIAGVVVPGIETRRTTTTIELADGQSFALAGLVRTH 372

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV-AMRDLSRPDDHYSV 436
             Q  E +P L +IP L   F ++ F  +E+E+ I AT  LV+P      LS P DHY  
Sbjct: 373 RNQSSEALPFLGEIPGLAPFFGSNGFKNQESELVIIATARLVQPTSDPLSLSTPLDHYRA 432

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
               +  FF  +    G  E    +     G  G+ Y
Sbjct: 433 PSRFERLFFTDM----GSTERPGAQATRLFGNYGYSY 465


>gi|227114876|ref|ZP_03828532.1| hypothetical protein PcarbP_18025 [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 479

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 120/456 (26%), Positives = 217/456 (47%), Gaps = 28/456 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            + T   +++  LF++   V     +  A    +           ++ + +++  +LQ+ 
Sbjct: 12  FRGTCKRLLAAGLFNAVLPVTLTTMMLPA--TTLAAGVSVAPVTDEVHLTVHQGRLLQLN 69

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                VLV+DP  A   + SP  ++++ K+VG   +  +  +G  +  + ++ E D+  L
Sbjct: 70  ELPDSVLVADPNIASFELPSPGNLFVYAKSVGTTTLYAMDENGNVINAIRLVSEHDLKAL 129

Query: 124 EMTLRRFIADSNIRVE-MVSDTVVLHGMVRTIQDSQRAVELSETFLSQS----------- 171
              ++R    ++I++E  +   V++ G V T QD++R ++  +T++  S           
Sbjct: 130 GERMKREFPGADIQLEPSIPSGVIVRGSVDTPQDAKRVIDSIQTYIKSSVGGGQGGGGGG 189

Query: 172 -GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
             R   ++ +S  V+N L I    Q+ ++V + EV R +  ++GF  + + S+   + + 
Sbjct: 190 GERLPGSSETSGNVVNQLKIKTPSQINIQVRVVEVSRKLTSELGFNWAASLSTGSGNMTA 249

Query: 231 AADFGGKFVSEGGDFSVKGV------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            +       +                  R     +L A+ +      LAEP LTA+SG++
Sbjct: 250 GSGSRLNLFNATTGRFANPTDAGFLNFGRSRLSGLLTAMNQQGMATVLAEPNLTAMSGET 309

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A+F +GG+     +  +  + S+    YGV+L  TPT+LS  RI L I  EVSE     +
Sbjct: 310 AAFAAGGEVPIVLI--TNNSVSIDYKSYGVILRMTPTLLSANRISLHIAPEVSELTDVGS 367

Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P+  VR+ADTTVEL SG +  LAG+L+    Q   G+P LS +P+ G LF 
Sbjct: 368 VQLEGGSRIPALTVRRADTTVELASGQSFALAGMLRSAGSQTINGVPGLSSVPMFGRLFE 427

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +   ++EETE+ I AT ++V+PV   DL  P     
Sbjct: 428 SEATSQEETELVIIATAYVVEPVNAGDLQTPGQGVK 463


>gi|89899603|ref|YP_522074.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344340|gb|ABD68543.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 571

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 127/543 (23%), Positives = 213/543 (39%), Gaps = 97/543 (17%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISD---VEIGKGKKISIGLNKVIILQVPVDVQDV 69
              + +   + AKLP    A A     +      +     + I + K  +L+    V  +
Sbjct: 25  GATVQAGKATAAKLPAPATAPARQALSTTGLCSRVNIAPAVLIPVGKSTVLRPSSPVTRI 84

Query: 70  LVSDPTKA-------------------------------DVVVHSPRTMYLFGKNVGQAN 98
           L+ +P  A                               DV++ +P  +YL GK +G  N
Sbjct: 85  LLGNPENARAARPADTPEGKKEEGVKTPSVNTRPGVADVDVLLLAPTEVYLLGKTIGTTN 144

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDS 157
           V+++  DG      D+++  D   L+  + + +  +  I+V    D++VL GMV   +  
Sbjct: 145 VVMLDRDGTC-TAFDVVVAMDTMALQAVIGQLLPIEKEIKVTSAFDSIVLSGMVSDTEAL 203

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            R  +L+  ++        +N    +V+N+L +    QV L+V +AE+ + +L Q G   
Sbjct: 204 TRVTDLANAYVRGQDGGGQSNQ---RVVNMLEVGAPQQVMLEVKVAEISKSLLDQFGINF 260

Query: 218 S------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------- 255
           S                  G +        G   S     SV  V+              
Sbjct: 261 SRAYVPGDGSMMRFLSGIFGGAVGAMGQISGTGASGVPFSSVDAVIGGTVPIAGASGGNV 320

Query: 256 -------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                                        L+  +    ++ LAEPT+ AISGQ+ SF +G
Sbjct: 321 TVTYDATTGRPTYTTSYGTVPGRGVSNATLNMQKNDGLVKVLAEPTIMAISGQTGSFLAG 380

Query: 291 GQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340
           G+          S    T++   ++GV + FTPTVL  GRI LR++ EVSE         
Sbjct: 381 GKIFIPVSKDNGSGGSTTTLEEKEFGVSVRFTPTVLGSGRINLRVRPEVSELNVAGVQIS 440

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G     +PS+  RKA+TTV+L  G +  + GL+K++        P L ++P++GALFR+
Sbjct: 441 SGGLNAVLPSFTSRKAETTVQLMDGQSFAIGGLIKNNTTTNINAFPFLGELPVVGALFRS 500

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           + F  + +E+    TP LVKP+       P D Y     ++     ++        AS  
Sbjct: 501 TEFQTDRSELVFVITPRLVKPL-PVGYRLPTDGYVPPSRSELILGGKLEGQRTDDAASGD 559

Query: 461 EGQ 463
              
Sbjct: 560 NPA 562


>gi|328952514|ref|YP_004369848.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
 gi|328452838|gb|AEB08667.1| type II and III secretion system protein [Desulfobacca acetoxidans
           DSM 11109]
          Length = 536

 Score =  270 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 114/504 (22%), Positives = 195/504 (38%), Gaps = 61/504 (12%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
                +SI L     +  +    +  +        + I              + +    +
Sbjct: 53  YLSRWLSIVLLFFLLTSGRAVLAENESDFASKAGRIVIAPHM--------SFVKRTQRPI 104

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGK-NVGQANVILIGHDG-KQMLNLDILIERDI-AHL 123
             V++++P+ AD  + +P  +++ GK   G  ++ L   D   +   + +  +  +   +
Sbjct: 105 TRVVLANPSLADAELLTPTQLFIVGKVKQGVTSLTLWHGDNYAETYEIVVSFDDKVWNDV 164

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +  +RR +  + ++VE + + V+L G V +  D  +  ++++ F  +             
Sbjct: 165 QAAIRRLVPRARVKVERLPEGVMLDGAVESQGDLDKVDKIAKFFFGECT----------- 213

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------- 217
             N++ + G  QV L+V +AEV R  +KQ+G                             
Sbjct: 214 --NMITVMGSQQVQLEVKVAEVSRSGIKQLGLGFLLDKDYKVAVFPSGTAAGAMAGDRTT 271

Query: 218 --SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                  SS    S  A            F             ++  L+     R LA P
Sbjct: 272 VSQWPTGSSDTKTSSLASVAALASPYSSAFQALVHGLNDDILGIVSLLQGQGLTRLLASP 331

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           TL  +SGQ A F  GG+  Y+TV  STG        +GV+L FTP VL    I + +  E
Sbjct: 332 TLVTMSGQEAHFLVGGEIPYQTV-GSTGTPGTDFKKFGVMLKFTPYVLGDETITISVDPE 390

Query: 336 VSEPV-----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           VS P         +   +P    R   +T++L  G    +AGLL+DD +   + IP L  
Sbjct: 391 VSAPDYTLGTTTSSGTTVPGLITRTGHSTLQLKDGQVFAMAGLLRDDFRSTVKKIPFLGN 450

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHY-SVEDDAKAFFFNRV 448
           +PILG LF +  F R ETE+ I   P +V+ +  +++   P  +      D   F  NR 
Sbjct: 451 LPILGTLFTSKEFQRSETELMIIVKPKIVRALNPQEVPALPGSNMERDVSDLDFFILNRG 510

Query: 449 NKIYGPKEASEVE-GQNYKGAIGF 471
               G   A       ++ G IGF
Sbjct: 511 WPKTGASSAPPPAKAPSFVGEIGF 534


>gi|220922532|ref|YP_002497834.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
 gi|219947139|gb|ACL57531.1| type II and III secretion system protein [Methylobacterium nodulans
           ORS 2060]
          Length = 479

 Score =  269 bits (688), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 121/481 (25%), Positives = 192/481 (39%), Gaps = 57/481 (11%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +  E     ++ + +NK   ++V     D+L+     A+V+  S +T+Y+ GK VG  N
Sbjct: 6   PAAGETITVTRVRVPVNKSQTMRVVAPFSDILIGASKIAEVIPLSDQTLYILGKEVGTTN 65

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           V L+  + K +  +D+ +  D  ++   +        +R     D  VL G         
Sbjct: 66  VSLVDANKKVIGVVDVEVGLDAGNIGAKVLGGSGARGVRFTTEGDKAVLTGTAEDAV--- 122

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                     +       +N +   VMN+  +    QV LKV   E+ R   + +G +  
Sbjct: 123 ---------AADRAVALASNLAPGGVMNMTTVRSTQQVMLKVRFIEIDRTAGRDLGVRWE 173

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------------------- 252
            T  S        A       +  G   +  + +                          
Sbjct: 174 GTNRSVAGRSGTVAATPEALTTAPGGNGIGLLSNAIPAVAGAALSTVAAPQFGQFAARLI 233

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GAT 305
                  +  + ALE     R LAEP L A SGQ A F +GG++   T SSS        
Sbjct: 234 NSNSAKVDLFISALETQGLARRLAEPNLVASSGQPAEFLAGGEYPIPTASSSGALGVPTI 293

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVE 361
           +VT  ++GV L FTPTVLS G I L+++ EVSE    ++       +P    R+A T +E
Sbjct: 294 TVTFKEFGVRLTFTPTVLSNGLINLQLEPEVSEIDPAISVNTGLVTVPGLSKRRARTNIE 353

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G +  +AGLL+   ++  E +P L  IP+LGALF +  F + +TE+ +  TP LVKP
Sbjct: 354 MRDGQSFAIAGLLQAVNEKNLEQLPWLGSIPVLGALFSSKEFRQRDTELVVIVTPHLVKP 413

Query: 422 VAMRD-LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY-------KGAIGFIY 473
                 L+ P D     +DA  F   +               Q          G+ G + 
Sbjct: 414 SKPGQPLATPLDTRMPTNDADYFLGGQTELPKSKNPGKPSRLQELISAEGAAIGSYGHVV 473

Query: 474 K 474
           K
Sbjct: 474 K 474


>gi|87199101|ref|YP_496358.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134782|gb|ABD25524.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 539

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 121/472 (25%), Positives = 208/472 (44%), Gaps = 56/472 (11%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
               +       + ++I + +  ++ VP  + DV V+D   ADV V S   +Y+FGK  G
Sbjct: 40  APLHAQGMTSPARTVTISIGRGELVTVPGRMADVFVADERVADVQVKSTNQLYVFGKAGG 99

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           +  +      G  + + ++ +  ++  ++  L   + ++ I V  +++TV+L G V   +
Sbjct: 100 ETTIYASNAKGDVVWSANVRVGNNLDSIDQMLHLAMPEARINVATMNNTVLLTGTVAAPE 159

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D+  A  L + F+ +             V++ L +A   QV+L V  AEV R +++ +G 
Sbjct: 160 DAAEAERLVKAFVGEKT----------NVISRLKMATPLQVSLHVKFAEVSRSLVRTLGV 209

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---------FETVLHA---- 262
             +    + G             V+   +          S             + A    
Sbjct: 210 NLTTIDGTGGIKFGIGQGSTTGSVATNRNLPFGVGTSSTSGYILDPTGATSNYVSATGTS 269

Query: 263 ---------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                                       E    + TL+EP LTAISG++A F +GG++  
Sbjct: 270 VAASSSGTTIAGMGKLLGLDLLAALDAGETIGLVTTLSEPNLTAISGETAEFLAGGEYPI 329

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSY 351
             VS   G TS+    YGV L +TPTVL+ GRI +R++ E SE         ++ ++P+ 
Sbjct: 330 P-VSQGLGTTSIEYKKYGVSLAYTPTVLANGRISIRVRPEASELSSTGALKLDSVEIPAL 388

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            VR+A+TTVEL SG + ++AGLL++  Q     +P    IPILG+LFR++ + + ETE+ 
Sbjct: 389 TVRRAETTVELGSGQSFMIAGLLQNGAQNALTKMPGAGDIPILGSLFRSTSYKKGETELV 448

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           I  TP+LV PV   D+  P D +   ++ +      +              Q
Sbjct: 449 IVVTPYLVNPVNANDIKLPTDGFQSPNEIQR-LLGHMESDGVTGGDRPKPTQ 499


>gi|197337022|ref|YP_002157812.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197314274|gb|ACH63723.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 440

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++      ++    DV  V VSDP  AD  V   + + ++GK +GQ++V++   +G  +
Sbjct: 27  INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  +++ + +  ++  +     D ++ V  + + VVL G V T Q+      +    L 
Sbjct: 87  ANKKVIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146

Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +           +                ++N + +A   QV +K++IAEV +  L+ IG
Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+                      + G               +V+ A+   T  + LAE
Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ +SG+SASF  GG+    T      +T+V   +YGV L     V    +I L +  
Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305

Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS   I    ++ D+P+ + R+A TTVEL  G + VL GLL  + ++  + IP +  IP
Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ILGALFR S   R +TE+ I AT  LVKP+    +  P   
Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406


>gi|59713403|ref|YP_206178.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481651|gb|AAW87290.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 440

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 38/401 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++      ++    DV  V VSDP  AD  V   + + ++GK +GQ++V++   +G  +
Sbjct: 27  INMSEGDSQVILANKDVGSVFVSDPKIADYQVIEKKKVIVYGKKIGQSSVMVFDRNGHTL 86

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  +++ + +  ++  +     D ++ V  + + VVL G V T Q+      +    L 
Sbjct: 87  ANKKLIVNKSLDSIKQYISVKYPDVDVDVFNIGEQVVLSGTVSTEQEKDEINNIVGQLLD 146

Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +           +                ++N + +A   QV +K++IAEV +  L+ IG
Sbjct: 147 KDDEKFTFEQDMEDQDYEIQFMERTDYKGIVNNIEVATTKQVNVKISIAEVSQSFLQDIG 206

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+                      + G               +V+ A+   T  + LAE
Sbjct: 207 IQYG-------------------TDAAGVFIQPLTHFSSSDIMSVITAIGSDTVGQILAE 247

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ +SG+SASF  GG+    T      +T+V   +YGV L     V    +I L +  
Sbjct: 248 PNLSVVSGESASFLVGGELPVVTTV--NNSTNVMYKEYGVRLELMAKVKKDDKITLSLVP 305

Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS   I    ++ D+P+ + R+A TTVEL  G + VL GLL  + ++  + IP +  IP
Sbjct: 306 EVSSLDIQYENDSYDLPALKTRRARTTVELGDGQSFVLGGLLSSEDKESLQKIPFIGDIP 365

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           ILGALFR S   R +TE+ I AT  LVKP+    +  P   
Sbjct: 366 ILGALFRGSSTKRNKTELLIVATVNLVKPIHSSQIQLPMMR 406


>gi|260775653|ref|ZP_05884549.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608069|gb|EEX34238.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio coralliilyticus ATCC BAA-450]
          Length = 442

 Score =  268 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 109/414 (26%), Positives = 178/414 (42%), Gaps = 34/414 (8%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           + +      +   + + +            ++  V VS+P  AD  V     + ++ K+ 
Sbjct: 12  SPLLSVATTVAASEYLPMAEGDARPFATQQEIGTVFVSNPAVADYQVIDKHKVVIYSKST 71

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G++++I+    G  +L+  I + +    ++  LR    ++ +    V + VVL G V + 
Sbjct: 72  GKSSLIVFDQSGNTILSRRIQVNKSADSIQRYLRNHYPNAQVNAYYVGEQVVLSGTVSSE 131

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLK 199
           Q       +    L +    Q     ++                V+N + +    QV +K
Sbjct: 132 QVKDEIYIVVGEMLEKPANRQKFELETEDESYEMKFMERREYDGVVNNIEVVVTKQVNVK 191

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V+IAEV +  L+QIG  +   G   G      A                          +
Sbjct: 192 VSIAEVSQKALEQIGVSYFSKGQVPGSGVFVNA---------------INAFSADDILMM 236

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           ++A++  +  R LAEP L+  SG+SASF  GG+    T     G +SV+  ++GV L   
Sbjct: 237 INAIDNESVGRVLAEPNLSVTSGESASFLVGGELPVVTTI--DGGSSVSYKEFGVRLELM 294

Query: 320 PTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             V    +I L +  EVS        +  D+P+ + R+A TTVEL  G + VL GLL  +
Sbjct: 295 AKVKRDNKITLSLVPEVSSLDSQYENDTYDLPALKTRRARTTVELGDGQSFVLGGLLSSE 354

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             +    IPL+  IPILG LFRN+   R +TE+ I AT  LVKPV    +S P 
Sbjct: 355 DMESLSKIPLIGDIPILGTLFRNAETERNKTELIIVATVNLVKPVETSTISLPT 408


>gi|283787693|ref|YP_003367558.1| tight adherence secretin RcpA [Citrobacter rodentium ICC168]
 gi|282951147|emb|CBG90838.1| putative tight adherence secretin RcpA [Citrobacter rodentium
           ICC168]
          Length = 482

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 124/496 (25%), Positives = 215/496 (43%), Gaps = 55/496 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            R   TM+S  L ++      LP    A                 + +   +        
Sbjct: 8   SRHVLTMLSHLLLTAVLLSFSLPAAAGA-----------------LYMKHGQSRNFHFTG 50

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           D+  + +SDP  AD  V + + + ++ KN G  ++I+ G +   +L   I ++  ++ + 
Sbjct: 51  DLDTIFISDPRVADYKVVNNKNIIVYAKNTGTTDLIVYGRNNTVLLKHSISVDPFLSDIN 110

Query: 125 MTLRRFIADSNIRVE------MVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             + R    ++I V         +D VV  ++G V   +      +L  + ++ SG  + 
Sbjct: 111 QRVARLFPGNSIEVTRFMGGATAADKVVYIINGSVTDEESMDAIYQLVGSIVNSSGGEEK 170

Query: 177 ANSSSKK-------------------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
            N S+ K                   V+N + +   +QV + +T+ EV +     +G   
Sbjct: 171 DNKSANKRVVDSKINTDLIEKKKYANVINKMQLVASNQVNVHLTVVEVSKTFTDALGIDW 230

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           S    SS  +   + +  G F         KG  D  +  TV++A++  +  R +A+P L
Sbjct: 231 SSLTLSSIVNGGASINNPGTF----NLLGFKGGFDAKNISTVINAIQNDSVARIMAQPNL 286

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T +SG++A F  GG+    + +S    T+VT  +YG+ L     V    +I L +  E+S
Sbjct: 287 TVLSGETADFLVGGEIPILSKNSDNEGTTVTYKEYGIKLSIAAKVEKKSKIKLSLSNEIS 346

Query: 338 EPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                   NA  +P+   R++ +T+EL  G +  + GLL +   +    +P +  IPILG
Sbjct: 347 SISGAYSFNAYSIPTLTTRRSSSTIELADGDSFAIGGLLTEKDYETLGKVPFIGDIPILG 406

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           AL RNS   RE+TE+ I AT  LVKPVA   D+  P   Y+   + K FF   V+K  G 
Sbjct: 407 ALARNSNTQREKTELVIFATVNLVKPVASNRDIVLP--EYNKTSNNKLFFNVGVDK--GT 462

Query: 455 KEASEVEGQNYKGAIG 470
           +E    +  +   + G
Sbjct: 463 RENRLSKDTDKFLSYG 478


>gi|258620803|ref|ZP_05715838.1| Flp pilus assembly protein [Vibrio mimicus VM573]
 gi|258587001|gb|EEW11715.1| Flp pilus assembly protein [Vibrio mimicus VM573]
          Length = 444

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 183/442 (41%), Gaps = 42/442 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G
Sbjct: 23  AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            ++ N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L   
Sbjct: 83  NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142

Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            L +                        A      V+N L +   +Q+ +K+TIAEV   
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +   G                    G  ++            ++ A      
Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304

Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++ +  P+    +    + 
Sbjct: 423 RIDLSGVDEPELQRTINAGGFN 444


>gi|86159249|ref|YP_466034.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775760|gb|ABC82597.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 487

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/484 (25%), Positives = 207/484 (42%), Gaps = 54/484 (11%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M    +  +   VA      +     + I D E+G  + +S+   +  +L V   +  + 
Sbjct: 1   MSRHAVVVALMLVAGRAAAAQDVVPTMRI-DREVGAARSMSLEAGQNRLLVVSDQIGRIA 59

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V++P  AD+ V +P  + L  K +G  ++ L   D   +  + + + R++  L   L+  
Sbjct: 60  VANPDVADLKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VIALQVTRNLEGLRKQLKEL 118

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
            A   I V    D VV+ G V  ++  +R  E++                + KV NL+ +
Sbjct: 119 FAGEKIEVSSAGDLVVISGQVSDVRIPERVAEVAR-------------LHATKVANLVQV 165

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVS 240
           +G+ QV L+V  AEV R  L+++G                  +      F        + 
Sbjct: 166 SGQQQVQLEVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIP 225

Query: 241 EGGDFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             G                              +F F  +L+ LE++   +TLAEPTL A
Sbjct: 226 GTGPRGLWGPGMPPDVPNPAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVA 285

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SGQ A+F +GG+       S+ G T+V    +G+ L FTPTV+    I LR++ EVS+ 
Sbjct: 286 MSGQEAAFLAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDL 343

Query: 340 VIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                       +P    R+++TT+ L  G +  +AGL+ D ++     +P+L  IPILG
Sbjct: 344 DPTTAVTVGGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILG 403

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFNRVNKIYG 453
           ALFR+  + R+ETE+ +  T  L KPVA  +L   P D   +   DA  F          
Sbjct: 404 ALFRSQAYQRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLGSDGSAVK 463

Query: 454 PKEA 457
             + 
Sbjct: 464 QPKP 467


>gi|262164949|ref|ZP_06032687.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
 gi|262027329|gb|EEY45996.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus VM223]
          Length = 444

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 106/442 (23%), Positives = 182/442 (41%), Gaps = 42/442 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G
Sbjct: 23  AELMNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGG 82

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            ++ N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L   
Sbjct: 83  NEIYNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGE 142

Query: 167 FLSQ------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            L +                        A      V+N L +   +Q+ +K+TIAEV   
Sbjct: 143 MLKKNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +   G                    G  ++            ++ A      
Sbjct: 203 FLSELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDI 246

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I
Sbjct: 247 GQVLAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENI 304

Query: 329 GLRIQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    
Sbjct: 305 RLSLLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRK 364

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 365 IPILGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLL 422

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              +  +  P+    +    + 
Sbjct: 423 RIDLTGVDEPELQRTINAGGFN 444


>gi|325108834|ref|YP_004269902.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324969102|gb|ADY59880.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 736

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/488 (20%), Positives = 187/488 (38%), Gaps = 49/488 (10%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           +  +          +           +K+ + LN+  +++    V  + ++DPT  D+  
Sbjct: 43  APTRSAQSSRIQQRLDARIVSMPQVERKLELVLNRSQLVKTRSRVTRMAIADPTVIDIAP 102

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFI 131
                  + G  +G   + L   +    L  ++ +  D             LE  +    
Sbjct: 103 FEEDEFAIIGTAIGSTTLTLWFENDDNPLIYEVTVIDDPNVEEQLRIDYGKLERKIAILF 162

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----------- 180
            +S + +  + + +V+ G  +   ++ R +++            Y  +            
Sbjct: 163 PNSKVYLIPLHEKLVVKGQAKDAAEAARILQIVRGEFLDDYGGLYGPNGGAGRGGGGGGG 222

Query: 181 -------------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                        S  ++N+L + GE QV L VTIAE+ R  L+++G   ++  ++    
Sbjct: 223 YDDDGIRDEDDLYSSFIVNMLQVPGEYQVMLHVTIAELNRSQLRRMGVDFAVLFANGQHF 282

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                         GG  ++ G+ +      +++AL      + L+ P+LT +SG  A F
Sbjct: 283 IGSTIS--------GGVPTLTGIFNNGDISVLINALASNGTAKILSRPSLTTLSGHPAQF 334

Query: 288 TSGGQH--LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            +GG+              TS     +G  +   PTV+      LRI  E S+     + 
Sbjct: 335 LAGGEFAVPTTVGVGGVQGTSTQFRGFGTSMVVVPTVVDGDLFRLRIAPEFSQINQNNSV 394

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFN 404
           G +P    R+  TTVEL  G TIVL GLL          IPLL +IP++G L F   R  
Sbjct: 395 GGIPGLDSRRVQTTVELREGQTIVLGGLLSRQTASEVTRIPLLGEIPLIGPLMFNTKRAT 454

Query: 405 REETEIFIAATPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            +E E+ +  TP +V+ +   ++   P  + +  +D + +   R     G  +    +  
Sbjct: 455 EDELELLVLVTPEIVRAMDPDEVPPMPGYYVTHPNDRELY---RYAMTEGAPDLEVYQLA 511

Query: 464 NYKGAIGF 471
            Y   +G+
Sbjct: 512 PYGNKVGY 519


>gi|283779855|ref|YP_003370610.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283438308|gb|ADB16750.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 585

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 108/476 (22%), Positives = 199/476 (41%), Gaps = 24/476 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           RY        + + L  + P+ ++   +         +     G  +K+ + +N   +++
Sbjct: 13  RYSLLAGLPALLVALTFAAPAFSQPMSLPGVGPMPAAVKFKVQGPAEKLEMTVNTSRVVE 72

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
            P DV  +LV++P    +   SP ++ L     G   + +   D + +  LD+++  D+ 
Sbjct: 73  FPFDVPKMLVNNPDLVRITPISPNSIQLSAVKGGVTQLNVWNADDQ-VTTLDLIVIPDVQ 131

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            LEM L+    D+ IR+  ++ ++ + G V   +       ++E +              
Sbjct: 132 ELEMILKHEFPDAAIRLRPLASSLYISGFVPKAEMVASITRVAEDYFP------------ 179

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238
            K++N + + G  +V L V + EV R  L+ +GF  +        ++S +      G   
Sbjct: 180 -KIINNMTVGGVQKVLLHVKVMEVSRTKLRTMGFDWAQLNGDDFVTQSVSGLLQTPGTLT 238

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            + G       + D   F   L AL +    + LAEPTL  +SG+ A F  GG+      
Sbjct: 239 GNTGATVRFGILTDNNQFYGFLEALRQNDLAKLLAEPTLVTMSGRPAYFNVGGEVPIPM- 297

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKA 356
             S G T+V    +G  + F P VL  G I L ++ EV+E           +P +R R A
Sbjct: 298 QQSLGVTTVQYKQFGTRIDFVPIVLGNGSIRLEVRPEVTEIDPSLRDAVTGVPGFRQRGA 357

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT VE+ +G T+ +AGL+ + ++    G+P L+ +P  G  FR       E E+ I  TP
Sbjct: 358 DTAVEIKAGQTMAIAGLVYNRVEASNRGVPFLADLPWAGGAFRRVSEKVNEVELVIMVTP 417

Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN--KIYGPKEASEVEGQNYKGA 468
              + +   ++    P    +   D + +    +   K          +G  ++G 
Sbjct: 418 EFTEALDPSEVPACGPGQLTTSPTDKELYGRGYIEVPKANCNNGNCAPQGSMFQGT 473


>gi|170022934|ref|YP_001719439.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
 gi|169749468|gb|ACA66986.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis YPIII]
          Length = 423

 Score =  266 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 104/440 (23%), Positives = 191/440 (43%), Gaps = 35/440 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K+I + +    I+++  ++  V VS    AD  +    ++ ++ K  G A   
Sbjct: 10  FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   + + +    +L+   I      +R    DS I +  + ++ +L G   T +     
Sbjct: 70  LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129

Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +     +     +      ++   + V+N + +   +QV +K+TI E+ +D  + IG 
Sbjct: 130 ANIVGEATASKKEKEREEHYQSSPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 189

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +   S++G  +                       +  S  T++HA+      + LAEP
Sbjct: 190 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 230

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L+ +SG+ ASF  GG+    + + +    SV   ++G+ L+    V    RI + +  E
Sbjct: 231 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 288

Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS      N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P
Sbjct: 289 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 348

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    N   
Sbjct: 349 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTIERFF----NLTN 402

Query: 453 GPKEASEVEGQNYKGAIGFI 472
                   + +++    GFI
Sbjct: 403 IKDAKRRKQAKDFLQKGGFI 422


>gi|261251281|ref|ZP_05943855.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
 gi|260938154|gb|EEX94142.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio orientalis CIP 102891]
          Length = 441

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDDNKVVVYGVGQGSTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ T+     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141

Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +                    +  +  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINHLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G                    G   +           +V+ A      
Sbjct: 202 FLSELGVSYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+ ASF +GG+             S++  +YGV L     V     I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +P+ R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+    +E   + 
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441


>gi|332162954|ref|YP_004299531.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325667184|gb|ADZ43828.1| putative tight adherance operon protein [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 410

 Score =  266 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 106/403 (26%), Positives = 188/403 (46%), Gaps = 33/403 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
            I      +R    +S+I +  + D+ +L G V T +  +    +    +         +
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                            +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDDSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS        
Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA FRN+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
             + +TE+ + AT  LV+PV+ +++  P  ++      + FF 
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386


>gi|51597670|ref|YP_071861.1| outer membrane secretin family protein [Yersinia pseudotuberculosis
           IP 32953]
 gi|186896808|ref|YP_001873920.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
 gi|51590952|emb|CAH22610.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|186699834|gb|ACC90463.1| type II and III secretion system protein [Yersinia
           pseudotuberculosis PB1/+]
          Length = 439

 Score =  266 bits (679), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 105/440 (23%), Positives = 190/440 (43%), Gaps = 35/440 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K+I + +    I+++  ++  V VS    AD  +    ++ ++ K  G A   
Sbjct: 26  FENSANAKQIYLPIGGSHIIKMQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   + + +    +L+   I      +R    DS I +  + ++ +L G   T +     
Sbjct: 86  LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145

Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +     +     +      +N   + V+N + +   +QV +K+TI E+ +D  + IG 
Sbjct: 146 ASIVGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +   S++G  +                       +  S  T++HA+      + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L+ +SG+ ASF  GG+    + + +    SV   ++G+ L+    V    RI + +  E
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304

Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS      N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P
Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    N   
Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418

Query: 453 GPKEASEVEGQNYKGAIGFI 472
                   + + +    GFI
Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438


>gi|86144318|ref|ZP_01062650.1| Flp pilus assembly protein [Vibrio sp. MED222]
 gi|85837217|gb|EAQ55329.1| Flp pilus assembly protein [Vibrio sp. MED222]
          Length = 441

 Score =  265 bits (678), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 141

Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                    A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G                    G   +           +V+ A      
Sbjct: 202 FLTELGVTYSDSGD------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAIRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +S  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441


>gi|197123317|ref|YP_002135268.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
 gi|196173166|gb|ACG74139.1| type II and III secretion system protein [Anaeromyxobacter sp. K]
          Length = 484

 Score =  265 bits (678), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 123/465 (26%), Positives = 202/465 (43%), Gaps = 54/465 (11%)

Query: 20  NPSVAKLPPIKEANAAVINIS-DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
              +        A   V  +  D E+G  + +S+   +  +L V   +  + V++P  AD
Sbjct: 8   VALMLVGGGAAAAQDVVPTMRIDREVGAARSMSLEAGQNRLLVVSDQIGRIAVANPDVAD 67

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
           + V +P  + L  K +G  ++ L   D   +  + + + R++  L   L+   A   I V
Sbjct: 68  LKVVTPYQVLLTAKGIGSTDLTLWDRDNHPL-VVALQVTRNLEGLRKQLKELFAGEKIDV 126

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               D VV+ G V  ++  +R  E++                + KV NL+ ++G+ QV L
Sbjct: 127 SSAGDLVVISGQVSDVRIPERVAEVAR-------------LHASKVANLVQVSGQQQVQL 173

Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFS-- 246
           +V  AEV R  L+++G                  +      F        +   G     
Sbjct: 174 EVRFAEVGRTGLREMGVNFFHKSDDGKRVGGMTGNRTYPGDFLNTQSNPAIPGTGPRGLW 233

Query: 247 -------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                                    +F F  +L+ LE++   +TLAEPTL A+SGQ A+F
Sbjct: 234 GPGLPPDVPNAAFNNAFSFFLSQGGQFPFSVMLNLLEQSNLAKTLAEPTLVAMSGQEAAF 293

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            +GG+       S+ G T+V    +G+ L FTPTV+    I LR++ EVS+         
Sbjct: 294 LAGGELPIPLA-STFGQTAVEWKKFGIQLRFTPTVIGD-AIHLRLKAEVSDLDPTTAVTV 351

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P    R+++TT+ L  G +  +AGL+ D ++     +P+L  IPILGALFR+  +
Sbjct: 352 GGTTIPGLVSRQSETTIRLGDGQSFAVAGLISDKVRSQSARVPVLGSIPILGALFRSQAY 411

Query: 404 NREETEIFIAATPFLVKPVAMRDL-SRPDD-HYSVEDDAKAFFFN 446
            R+ETE+ +  T  L KPVA  +L   P D   +   DA  F   
Sbjct: 412 QRDETELLVVVTARLAKPVAPHELPPLPTDFENNDPSDAALFLLG 456


>gi|153948843|ref|YP_001399594.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
 gi|152960338|gb|ABS47799.1| type II/III secretion system protein [Yersinia pseudotuberculosis
           IP 31758]
          Length = 439

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 105/440 (23%), Positives = 189/440 (42%), Gaps = 35/440 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K+I + +    I++   ++  V VS    AD  +    ++ ++ K  G A   
Sbjct: 26  FENTATAKQIYLPIGGSHIIKTQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   + + +    +L+   I      +R    DS I +  + ++ +L G   T +     
Sbjct: 86  LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145

Query: 161 VELSETFLSQSGRNQ-----YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +     +     +      +N   + V+N + +   +QV +K+TI E+ +D  + IG 
Sbjct: 146 TSIIGEATASKKEKEREESYQSNPEYRGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +   S++G  +                       +  S  T++HA+      + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L+ +SG+ ASF  GG+    + + +    SV   ++G+ L+    V    RI + +  E
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNG--ISVEYKEFGIKLNIGAKVNEKKRIRVMLGEE 304

Query: 336 VSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS      N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  +P
Sbjct: 305 VSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDVP 364

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    N   
Sbjct: 365 LLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLTN 418

Query: 453 GPKEASEVEGQNYKGAIGFI 472
                   + + +    GFI
Sbjct: 419 IKDAKRRKQAKEFLQKGGFI 438


>gi|148974885|ref|ZP_01811865.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
 gi|145965394|gb|EDK30643.1| rough colony protein RcpA [Vibrionales bacterium SWAT-3]
          Length = 441

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASELMNLDQGAAKTINLKRQISTVFVANQEIADYKIIDENKVVVYGVGQGTTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  + D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNIGDQVVLDGIVGSEEIKQKINRLVG 141

Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L++                       A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLNKERRRAAYELKDADGEALDEIEYTAQYNYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G                    G   +            V+ A      
Sbjct: 202 FLTELGVTYSDSGE------------------PGTFVNKLLDFTAQDIVAVISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 244 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ITISYKEYGVKLAMVAKVTDTENI 301

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPILGDIPILGALFSHTSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 420 RIDLSELDEPELENTINQGGFN 441


>gi|149178342|ref|ZP_01856934.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148842868|gb|EDL57239.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 546

 Score =  265 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 103/440 (23%), Positives = 183/440 (41%), Gaps = 38/440 (8%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI--GHDG 106
           ++S+      IL++ +DV  V ++DP+K +VV    + + + GK+ G   + L       
Sbjct: 67  ELSVQQRHSKILKMKMDVFRVAIADPSKIEVVAFGSQEVEVIGKDTGTTTMTLWLGDEAN 126

Query: 107 KQMLNLDI----------LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            Q+L++ +          L   +    +  +  F  +S I++   +D +++ G  R  Q+
Sbjct: 127 PQILSVQVKVEGDNSIEDLRRMEYGEFQKMINEFFPNSKIQLVPFADKLIVRGQARDEQE 186

Query: 157 SQRAVELSETF--------------------LSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           + + + +                         +       A      V+++L + GE Q+
Sbjct: 187 AVQIITIIRARSGSGGGQGGGGGGGSLFADGAAADPFPGGAMLPEATVIDMLKVPGEKQI 246

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            LKV IA++ R   +             G ++ F      + +  GG   V         
Sbjct: 247 MLKVRIAQIDRSAARTASTNIIAQSGDFGWAQLFTGV--AQQLGNGGTGLVTASFTSSDV 304

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGV 314
           +  + AL +    + LAEP L  ISG++A+F SGG+             A + T   +G 
Sbjct: 305 DVFISALAQNGYAKILAEPNLVTISGRTANFISGGEFAVPTVVGVGGAQAATTTFKGFGT 364

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L F PTVL   RI L++    S     + +G +    V+   TTV+L  G  + +AGLL
Sbjct: 365 QLSFLPTVLDKDRIRLQVSPSFSTVNPALTSGGVLGVNVQAVTTTVDLREGQVLAIAGLL 424

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDD 432
           ++  +     +P +  IP++G LF N   +R+ETE+ I  +P LV P+   D     P  
Sbjct: 425 QEQQRGDLNRVPFIGDIPLVGPLFSNKGVSRDETELIILISPELVHPMEPEDAPTVLPGM 484

Query: 433 HYSVEDDAKAFFFNRVNKIY 452
             +   D   FF N +    
Sbjct: 485 EVTEPGDVDFFFMNNIEGKP 504


>gi|121534343|ref|ZP_01666167.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307113|gb|EAX48031.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 408

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 101/379 (26%), Positives = 173/379 (45%), Gaps = 29/379 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ +N+  +L     VQ V V++P  ADV+V S   + + GK  G   + +    G+  
Sbjct: 29  LTVAVNQSRVLGFSG-VQRVAVANPEIADVLVVSGTEVLVVGKAPGLTTMHVWTEAGR-- 85

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
              ++ +  D A +   ++  +    IRV  V+ TV+L G V T Q   RA +L+  +  
Sbjct: 86  ATYEVEVGVDDAKVAGEIKSILGYDGIRVSKVNRTVILEGAVDTQQQKARAEKLAAVY-- 143

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                        KV++LL +    QV ++  + E+ R  +K++G +   +  + G    
Sbjct: 144 -----------GDKVVSLLEVLRPVQVKIEAKVIEINRQKIKELGIKWGNSADTPGTFI- 191

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
               FG   ++         +         L AL ++ A + L++P +  +SG  AS   
Sbjct: 192 ----FGQSALNSKVGDVFGDLGGYADINAQLSALVKSGAAKVLSQPNVVTLSGDKASIMI 247

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----- 344
           GGQ        +   T +   DYG+ L   P V   G I  R++ EVS            
Sbjct: 248 GGQIPVPVAQDNNKIT-IEWKDYGIKLDIAPEVNGDGLIQSRVKAEVSSLDYNSANSIKL 306

Query: 345 --AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               ++P  R+RKA+T + L SG T+ + GL+  +  +    +P+L  +P+LG LFR++ 
Sbjct: 307 GAGMEIPPVRLRKAETAIALSSGQTMAIGGLIATETSKDVVKVPMLGDLPVLGHLFRSTS 366

Query: 403 FNREETEIFIAATPFLVKP 421
           F R ETE+ +  TP LV P
Sbjct: 367 FRRGETELLVLITPSLVNP 385


>gi|238897548|ref|YP_002923227.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465305|gb|ACQ67079.1| putative tight adherance operon protein [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 459

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 104/462 (22%), Positives = 199/462 (43%), Gaps = 55/462 (11%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
                      + +   + ++++   ++  V VS+P  AD  +    T+ ++ K  G++ 
Sbjct: 24  PGSANAANTGDLFMSEGESLVIKKKQNIDTVFVSNPAVADYKIVDHNTVIIYAKAEGKSE 83

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                 +     +  ++++  I  +   +R    +S +++E +  + +L GM  T +   
Sbjct: 84  FTFFEPNQNISYHATVMVDNIIKVVSDKIRMLYPESQVQIEKIGKSYLLTGMAPTEEVRD 143

Query: 159 RAVELSETFLSQSGRNQY--------------------------ANSSSKKVMNLLNIAG 192
             V +    +     N                             N   ++++N + +  
Sbjct: 144 NIVRMVGESIQSPKSNDKDTVSVRLDISDKGDASETTENVNSSLTNKVYERLINQIQLPV 203

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            +QV +K++I EV ++    IGF+ +  G+ S    +F AD                   
Sbjct: 204 SNQVNVKLSIVEVSKEFKDNIGFEWANLGTFSFHKFNFTAD------------------- 244

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                 +++AL+  +  R LAEP L+ +SG+SASF  GG+  Y     ++   S+   ++
Sbjct: 245 --RITHLVNALQDDSIARVLAEPNLSVLSGESASFLVGGEIPYVKDRDASNRASIDFKEF 302

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370
           G+ L  T  V    R+ + +  E+S  +    A    MPS + R+A+TTVEL  G + VL
Sbjct: 303 GIKLSVTAKVNENKRVKVMLSEEISSVIGNTKAEEFTMPSLKKRRANTTVELADGESFVL 362

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            GL+  + Q+  + +P +  IPILG+ FR+++ N    E+ + AT  LVKP+  ++++ P
Sbjct: 363 GGLMNQEEQEALQKVPFIGDIPILGSFFRHTKTNNRSIELIVVATVNLVKPIPSKEITLP 422

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
           D  +        F    V K    K+ +E     + G  GFI
Sbjct: 423 D--FMKTSSIARFLNLSVIKNISQKKEAE----AFLGKGGFI 458


>gi|209809170|ref|YP_002264708.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
 gi|208010732|emb|CAQ81123.1| type II/III secretion system protein [Aliivibrio salmonicida
           LFI1238]
          Length = 445

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 113/398 (28%), Positives = 189/398 (47%), Gaps = 36/398 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++       + V  D+  V +SDP  AD  V   R + ++GK++G ++V++ G  G  +
Sbjct: 30  INMSEGGAKTISVEQDISSVFLSDPKIADYQVIDKRKIVIYGKSIGSSSVLIFGEKGNTL 89

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N  I++ + +A ++  +     D+ + +  V + VVL+G V T Q+      +    L 
Sbjct: 90  SNKKIMVNKSLATIQQYISVKYPDTAVDIFNVGEQVVLNGTVSTEQEKDEINGIVGELLE 149

Query: 170 QSGRNQYANSSSK---------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +S ++       +                V+N + +A   QV +K++IAEV +  L+QIG
Sbjct: 150 KSRKDFQFEQDMEDQDYEIQFMERHEYEGVVNNIVVATTKQVNVKISIAEVSQSFLEQIG 209

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+  + S  G        F                       +V+ A+   +  + LAE
Sbjct: 210 IQYGTSASVPGVFVQPLTSFSSS-----------------DIMSVITAIGNDSVGQILAE 252

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG+SASF  GG+    T      +T+V   ++GV L     V    +I L +  
Sbjct: 253 PNLSVISGESASFLVGGELPVVTTV--NNSTNVVYKEFGVRLDLMAKVKKDDKITLSLVP 310

Query: 335 EVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS        ++ ++P+ + R+A TTVEL  G + VL GLL  + ++  + +P +  IP
Sbjct: 311 EVSSLDTQYENDSYNLPALKTRRARTTVELGDGQSFVLGGLLNSEDKESLQKVPFIGDIP 370

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           ILGALFRNS   R +TE+ I AT  LV+P+    +  P
Sbjct: 371 ILGALFRNSVTQRNKTELIIVATVNLVQPIHPSQIQLP 408


>gi|312883308|ref|ZP_07743034.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368924|gb|EFP96450.1| Flp pilus assembly protein [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 440

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 109/439 (24%), Positives = 190/439 (43%), Gaps = 35/439 (7%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
                 + ++I  +    + +   +  V + +PT AD  +     + +FG  VG  +VI+
Sbjct: 23  SNCSAAEILNIDQDSAKTINLKNSISTVFLVNPTIADYKIIDDNKLVIFGVGVGSTSVIV 82

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            G  G ++ N ++++ + +  L+ T+        I V  + D VVL G+V + +  +   
Sbjct: 83  YGKGGSEIYNTELIVNKSLRLLKQTILARFPGETISVSNIGDQVVLDGVVSSERVKKAVS 142

Query: 162 ELS----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            L           + +   SG N     +  +++N + +   +Q+ +K+T+AEV    L 
Sbjct: 143 RLVGEMLKKQRNVQKYSDASGGNTQLEYNYHEIINNMKVLSTEQINVKITVAEVASSFLN 202

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           +IG  +S  G  +G   +    F                        V+ A+   +    
Sbjct: 203 EIGVSYSEMGGEAGKFVNKITHFSA-----------------KDIVAVISAVGNESVGHV 245

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP L+ ISG+ ASF  GG+             S++  +YGV L     V     I L 
Sbjct: 246 LAEPNLSVISGEKASFLVGGEIPI--GVRDDKGVSISYKEYGVKLSMIAKVADSENIRLS 303

Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS         V     PS + R+A+TTV+L  G + VLAGLL+ + ++    +P 
Sbjct: 304 LFPEVSTIDENHVTKVGQLTAPSLQTRRAETTVQLKDGQSFVLAGLLRSEERESLSKVPY 363

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IPI+GALF +S+ +R +TE+ I AT  LV PV    +  P   +    D +      
Sbjct: 364 LGDIPIIGALFSHSKTDRSKTELIIVATVNLVTPVDPDKVKLP--GFHRTSDIERLLNID 421

Query: 448 VNKIYGPKEASEVEGQNYK 466
           ++++  PK    +    + 
Sbjct: 422 LSELTEPKLGDMIIQGGFN 440


>gi|325108090|ref|YP_004269158.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
 gi|324968358|gb|ADY59136.1| type II and III secretion system protein [Planctomyces brasiliensis
           DSM 5305]
          Length = 714

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 111/486 (22%), Positives = 193/486 (39%), Gaps = 39/486 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISD--VEIGKGKKISIGLNKVII 59
           R   R      +  L   +    +         A +   +    +    ++S+      +
Sbjct: 22  RVFGRVLSVNTAALLLLGSLVCVQPSSASGQTHAPVTEGEIYHVLSATNQLSLTERFSRV 81

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L++   +  V   DP    V   +P  + +   + G   ++L+    K    +++ +E D
Sbjct: 82  LELEKRITRVDGFDPAVLTVSALTPHRVRIQAVSAGVTTLVLVDEFDKT-YTIEVFVEGD 140

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           + +L+  + RF  DS+++   V D+VVL G+V       +  E++E F            
Sbjct: 141 VRYLQSYIDRFFPDSSVKAVKVKDSVVLRGVVADPSHISQITEVAEQFFP---------- 190

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---- 235
              KV+N +     +QV L+V I E +R  ++Q+GF  S    S   S +  +       
Sbjct: 191 ---KVINHMQFGAANQVRLQVRIMEAQRSRIRQLGFNWSFLNGSGYVSSNPGSLSSPLGA 247

Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                       G         S   V     F   L AL++   +R L E ++ A SG+
Sbjct: 248 NLTPGQTPGLSYGGAGLSDSSISFGVVNANSVFRGFLEALKQEGLLRILVETSVVADSGR 307

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----P 339
            AS  SGG+     V  + G  SV   ++GV L   P VL  G++ L I  E SE     
Sbjct: 308 PASLLSGGEFP-ILVPQALGTLSVEWKEFGVKLEAVPIVLGQGQVILEIAPEFSERDFAN 366

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              ++   +P+   R+A+T V +  G T+++ GL+        + +P L ++P +GA FR
Sbjct: 367 AAQLDNTTVPAITTRRANTQVRMKFGQTLMIGGLIATRYTAETDKVPFLGELPGIGAAFR 426

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
             R++  ETE+ I  TP  V P+    +    P     V  D + F+   +         
Sbjct: 427 RVRYDENETELIILVTPEYVAPLDPHQVPDGGPGQFSDVPTDRELFWQGMIEVPNYGGPM 486

Query: 458 SEVEGQ 463
               G 
Sbjct: 487 PPNAGG 492


>gi|227820510|ref|YP_002824481.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
 gi|227339509|gb|ACP23728.1| type II and III secretion system protein RhcC2 [Sinorhizobium
           fredii NGR234]
          Length = 447

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 112/435 (25%), Positives = 194/435 (44%), Gaps = 21/435 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
              R   T     L               +    ++  + ++     + + + +  IL+ 
Sbjct: 5   RSLRPVRTGKVFLLILLTVLAVHCALPSASAQVKVDAINGQV-----LELTVGEGTILRF 59

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              V+ V ++D   ADV V SP  +Y++    G  N+I +  D      + + +  +   
Sbjct: 60  DEPVESVFLADTAIADVRVVSPGVVYIYATKTGDTNLIALSADQMTRGTVQVRVSGNPRA 119

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
            E +       + + + +     V  G  R + ++     + +++          ++  +
Sbjct: 120 AEQSALALQPTTRVDISLFGGQYVGTGQTRNVGEAMDMESVLQSY----------STPDR 169

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
             +N   IAG +QV ++V  AEV R+ L + G   S+  +S   S       G     + 
Sbjct: 170 PALNNTTIAGSNQVNIRVRFAEVARNELTRFGIDWSLFVNSGSFSFGIVRTGGASNEDDT 229

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  ++    D  +   +L AL+    +  LAEP +TA++GQ+ASF +GG+     V +  
Sbjct: 230 G-IAIGARGDHVNVNVLLDALQANGILTILAEPNITAVTGQTASFLAGGEIPVP-VPAGD 287

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADT 358
           G   +    +GV L FTPT+L   RI L+++ EVS              +PS R+R+ADT
Sbjct: 288 GQIGIEYKQFGVSLQFTPTLLPNNRIALQVRPEVSSVSQDSVVSISGLVVPSLRIRRADT 347

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T  +AGL +    Q     P++  +PILG LF++ RF R ETE+ I  TP+L
Sbjct: 348 AVEVGSGQTFAIAGLFQRQESQTLNKTPVVGDVPILGELFKSKRFQRNETELVILITPYL 407

Query: 419 VKPVAMRDLSRPDDH 433
           V P + R++  P D 
Sbjct: 408 VTPTSERNMKTPLDS 422


>gi|218676249|ref|YP_002395068.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
 gi|218324517|emb|CAV25991.1| Flp pilus assembly protein [Vibrio splendidus LGP32]
          Length = 446

 Score =  263 bits (673), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 110/442 (24%), Positives = 186/442 (42%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +++       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 27  ASELMNLDQGAAKTINLKRQISTVFVANQEVADYKIIDENKVVVYGVGQGATSVIVYDRG 86

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 87  GNEIYNAELVVNQSLRLLKQTLIARFPDENVVVSNVGDQVVLDGIVGSEEIKQKINRLVG 146

Query: 166 TFLSQSGRNQY-----------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +  R                    A  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 147 EMLKKDRRRAAYELKDADGEALDELEYTAKYNYDQVINNLKVLTTEQINVKLTVAEVSSS 206

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G                    G   +           +V+ A      
Sbjct: 207 FLTELGVTYSDSGQ------------------PGTFVNKLLDFTAQDIVSVISASGDDKI 248

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+ ASF +GG+             +++  +YGV L     V     I
Sbjct: 249 GRVLAEPNLSVISGEQASFLAGGEIPIAVRDQDG--ITISYKEYGVKLAMVAKVTDTENI 306

Query: 329 GLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 307 RLTLIPEVSSIDESNKTTTGLISVPSLRTRRAQTTVHLKDGQSFVLAGLLTSEERESLTK 366

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP+L  IPILGALF +S  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 367 IPILGDIPILGALFSHSSTNRSKTELIIVATVNLVDPVEQEQVKLP--SFRRTSDLERLL 424

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+  + +    + 
Sbjct: 425 RIDLSELDEPELENTINQGGFN 446


>gi|197118220|ref|YP_002138647.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
 gi|197087580|gb|ACH38851.1| Flp pilus assembly secretin CpaC [Geobacter bemidjiensis Bem]
          Length = 494

 Score =  263 bits (672), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 118/459 (25%), Positives = 193/459 (42%), Gaps = 62/459 (13%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
            V         + +N+ +++ +    + V ++ P  A++VV SP  + + GK VG   +I
Sbjct: 23  PVAAHAAVTTEVVVNRSVLVDLHTKSERVSIASPDVAELVVISPTQLQINGKKVGSTTLI 82

Query: 101 LIGHDGKQ------MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           +    GK       +   + ++E  I  L+  +++     NI+V+  +DT+VL G     
Sbjct: 83  VWDTAGKTSFFDVRVKRNESVLESQIEALQDQIQQMAPKDNIKVDYANDTIVLSGTAANE 142

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKK---------------------------VMNL 187
           Q   +A++L++ + + +G    A ++                              V+N 
Sbjct: 143 QTVAKALQLAQAYTAGNGSKAGAPATDPPLDTSRSSYQLSETQTGRQGGDADTVITVLNH 202

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + I    QV L+V +A+V +  LK +G    I G+S+    +      G+   +  D SV
Sbjct: 203 VEIVEPQQVLLEVKVAQVDKTALKSLGISAFIRGASAEGFSNLVGAPVGELAIKNPDGSV 262

Query: 248 KGVLDR-------------------------FSFETVLHALERATAIRTLAEPTLTAISG 282
           +                                   VL AL      + LAEP L   SG
Sbjct: 263 RSQATGIAGPIPGLANFTPIDSYQLGVSSFKAGIGAVLRALVTKNLAKVLAEPNLMVQSG 322

Query: 283 QSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEP 339
           Q   F +G +  Y  VS      ATS+   D GV L+F P VL  G I L+I   EVS  
Sbjct: 323 QVGKFLAGSKIPYSIVSGVGALSATSIQFIDVGVKLNFKPEVLENGLISLKIDPAEVSSI 382

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +     P    R+  T V+L  G +++LAGLL+++  +    IP+L  IPILGALFR
Sbjct: 383 TGVLAVNGYPIIDTREVRTRVKLKDGESLILAGLLQEEAIKAMSKIPILGDIPILGALFR 442

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRD-LSRPDDHYSVE 437
           +++ + +E E+    TP LV   A    +  P D     
Sbjct: 443 STQDDIKEKELVFFITPKLVTASAPGSRILLPTDKPLTP 481


>gi|307133496|dbj|BAJ19008.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    T  ++ K  
Sbjct: 17  AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|154250526|ref|YP_001411350.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
 gi|154154476|gb|ABS61693.1| type II and III secretion system protein [Parvibaculum
           lavamentivorans DS-1]
          Length = 461

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 109/438 (24%), Positives = 191/438 (43%), Gaps = 32/438 (7%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
           P+       + +    +   + +SI +    IL++   V  + +++P+  DV V S R +
Sbjct: 22  PMLAVLLTALLLPQGPVLAAETLSISIGGQRILKLGQTVDRIAIANPSIVDVKVISSREL 81

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            + G++ G  ++ +    G    +  +++  DI  L+  L R  A ++++       VVL
Sbjct: 82  RILGQSEGTTDLDIWFAGGAS-KSYYVVVGADITGLQSELARDPALADVKATETGKGVVL 140

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V +++  QRA E++ ++L +               ++L +A    V ++V  A V  
Sbjct: 141 KGQVYSLEAQQRAREIARSYLGKDAG------------DMLTVADRRMVAVEVRFAAVST 188

Query: 208 DILKQIGFQHSITGSSS-------GPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFS 255
             LK +G       +S          S SF    G     +        F++       +
Sbjct: 189 STLKALGLNFQSLDNSFQFAAIGPNASSSFGYTPGAGLDPDTSLPLSQAFNLFLAWPGSN 248

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYG 313
              V+ AL  A   + LAEPTL   SG+ A F +GG+       S    G  ++    +G
Sbjct: 249 LLGVISALSSANLAQLLAEPTLLVRSGEDADFLAGGEIPIPVPQSGVGNGTVTIEYKKFG 308

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
           V L    TVL   RI L++  EVSE        V    +P+ R R   TT+EL  G + V
Sbjct: 309 VQLGVAATVLDNDRIVLKVSPEVSELDYTNALVVQGFRIPALRTRSTRTTIELGDGQSFV 368

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL-S 428
           LAGL+      +++ IP + ++P++G  F+ ++  RE  E+ I ATP LV P+   ++  
Sbjct: 369 LAGLMYSTSGNIEDRIPGIGELPVIGTFFKRTQNARERQELIIVATPRLVSPMEAGEVPP 428

Query: 429 RPDDHYSVEDDAKAFFFN 446
            P + +  + D      N
Sbjct: 429 LPGEGHVYDSDLGQNLLN 446


>gi|4768955|gb|AAD29695.1| rough colony protein A [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    T  ++ K  
Sbjct: 17  AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGEA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|307548787|dbj|BAJ19109.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|307548802|dbj|BAJ19123.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    T  ++ K  
Sbjct: 17  AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|8096202|dbj|BAA96101.1| unnamed protein product [Actinobacillus actinomycetemcomitans]
          Length = 460

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    T  ++ K  
Sbjct: 17  AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|318604223|emb|CBY25721.1| type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 410

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 105/403 (26%), Positives = 187/403 (46%), Gaps = 33/403 (8%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           +++   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++ 
Sbjct: 1   MIKTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDN 60

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
            I      +R    +S+I +  + D+ +L G V T +  +    +    +         +
Sbjct: 61  TITAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKETIASIIGEAIGSEKTIASNS 120

Query: 179 SSSK-------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                            +V+N + + G +QV +K+TIAEV +D  + IG   S  G+ SG
Sbjct: 121 KKDSDGNNQYFNSPEYSRVVNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSG 180

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + F  +   KF ++G                ++HA+   +  R LAEP L+ +SG+SA
Sbjct: 181 SFQFFKLNGSNKFNAKG-------------ISALVHAINDGSIARVLAEPNLSVLSGESA 227

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
           SF  GG+     V+++  +T +T   +G+ L+    V +  RI +++  EVS        
Sbjct: 228 SFLVGGELPL--VNTTANSTVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNI 285

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 PS+R RKA TT+EL  G + +L GL+    ++  + IP +  IPILGA F N+ 
Sbjct: 286 DGGDAYPSFRTRKAATTLELGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFSNAE 345

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
             + +TE+ + AT  LV+PV+ +++  P  ++      + FF 
Sbjct: 346 TRKNQTELVVVATVNLVRPVSEKEVELP--NFMHTSTLERFFN 386


>gi|323493934|ref|ZP_08099051.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
 gi|323311875|gb|EGA65022.1| Flp pilus assembly protein [Vibrio brasiliensis LMG 20546]
          Length = 441

 Score =  262 bits (669), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 107/442 (24%), Positives = 185/442 (41%), Gaps = 43/442 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +   +  V V++   AD  +     + ++G   G  +VI+    
Sbjct: 22  ASQLMSLDQGAAKTINLKRQIATVFVANQQIADYKIIDENKVVVYGVGQGSTSVIVYDRG 81

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ T+     D N+ V  V D VVL G+V + +  Q+   L  
Sbjct: 82  GNEIYNAELVVNQSLRLLKQTIIARFPDENVVVSNVGDQVVLDGIVSSEEVKQKVYRLVG 141

Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             L +                    +  +  +  +V+N L +   +Q+ +K+T+AEV   
Sbjct: 142 EMLKKERRRHTYELRDADGEEYDELDYTSRFTYDQVINNLKVLTTEQINVKLTVAEVSSS 201

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +S +G                    G   +           +V+ A      
Sbjct: 202 FLTELGVTYSDSGE------------------PGKFVNKLLDFTAQDIVSVISASGDDKI 243

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + LAEP L+ ISG+ ASF +GG+             S++  +YGV L     V     I
Sbjct: 244 GQVLAEPNLSVISGEQASFLAGGEIPIAVRDEDG--ISISYKEYGVKLAMVAKVTDSENI 301

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +P+ R R+A TTV L  G + VLAGLL  + ++    
Sbjct: 302 RLTLIPEVSSIDESNKTSTGLISVPTLRTRRAQTTVHLKDGQSFVLAGLLTSEEREALTK 361

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L  IPILGALF ++  NR +TE+ I AT  LV PV    +  P   +    D +   
Sbjct: 362 IPFLGDIPILGALFSHTTTNRSKTELIIVATVNLVDPVESEQVKLP--SFKRTSDIERLL 419

Query: 445 FNRVNKIYGPKEASEVEGQNYK 466
              ++++  P+    +E   + 
Sbjct: 420 RIDLSELNEPELEGTIEQGGFN 441


>gi|262173894|ref|ZP_06041571.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
 gi|261891252|gb|EEY37239.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Vibrio mimicus MB-451]
          Length = 419

 Score =  262 bits (669), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/439 (24%), Positives = 182/439 (41%), Gaps = 42/439 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++       + +   +  V V+D T AD  +     + ++G   G  +VI+    G ++
Sbjct: 1   MNLDQGAAKTINLKRQIDTVFVADNTVADYRIVDQNKVVVYGVGQGATSVIVYDRGGNEI 60

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            N ++++ + +  L+ TL     D +I V  V D VVL G V + +   +   L    L 
Sbjct: 61  YNSEVVVNQSLRLLKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLK 120

Query: 170 Q------------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +                        A      V+N L +   +Q+ +K+TIAEV    L 
Sbjct: 121 KNVSKVNNHVIETGENNREETLQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLS 180

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G  +   G                    G  ++            ++ A       + 
Sbjct: 181 ELGVSYGDIGGGD----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQV 224

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP L+ ISG++ASF  GG+         T   ++   +YG+ L     V     I L 
Sbjct: 225 LAEPNLSVISGETASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLS 282

Query: 332 IQTEVSEPVI----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVS          ++ + PS + RKA TTV+L  G + VLAGLL  + ++    IP+
Sbjct: 283 LLPEVSSLDSVNRSDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPI 342

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  IPILGALF +++ +R++TE+ I AT  LV PV    +  P   +    D +      
Sbjct: 343 LGDIPILGALFSSTKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRID 400

Query: 448 VNKIYGPKEASEVEGQNYK 466
           ++ +  P+    +    + 
Sbjct: 401 LSGVDEPELQRTINAGGFN 419


>gi|262275469|ref|ZP_06053279.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
 gi|262220714|gb|EEY72029.1| type II/IV secretion system secretin RcpA/CpaC associated with Flp
           pilus assembly [Grimontia hollisae CIP 101886]
          Length = 454

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 107/425 (25%), Positives = 186/425 (43%), Gaps = 33/425 (7%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +      I++G      L+    +  V +SDP  AD  V     + +FG+ +G   +I+ 
Sbjct: 25  QASAAGVINLGTGDARSLEFNAVIGTVFISDPDIADYQVIDSNKLVVFGRKLGTTTLIVF 84

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             D + + +  I++ + +  +E  L     D ++ V  + + VVL G+V T ++      
Sbjct: 85  DEDSQTLSHRKIVVNQSLTKIEQILAIRYPDVDVSVLNMGEQVVLTGVVPTQKEKNEIYA 144

Query: 163 LSETFLSQS----------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +    LS+                   +  A  + + ++N L +    QV +K+TIAEV 
Sbjct: 145 VVGELLSKKFVERRTQWKTSFDEEFDIDFMARRTYEGLVNNLEVTVTKQVNVKLTIAEVN 204

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
             ++ ++G +                 F G      G     G     +    + A+   
Sbjct: 205 SSLINELGIKW---------GTILEDGFAGNGQFFKGITGFGGRT--TNVAAYISAINDD 253

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + L+EP ++ ISG++ASF  GG+              +   ++G+ L     VL   
Sbjct: 254 NVGQVLSEPNVSVISGETASFLVGGEIPITYRIDDG--YRIEYKEFGIGLDLAAEVLRDD 311

Query: 327 RIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  +VS      G    D+PS++VR+A TT+EL  G + VLAGLL  + ++    
Sbjct: 312 KIKLSVMPQVSSVDNQYGDTLLDIPSFKVRRARTTLELGDGDSFVLAGLLSSEDEEALSK 371

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP +  +PILGALFRN+   R +TE+ I AT  LV+PV+  +++ P            FF
Sbjct: 372 IPFIGDVPILGALFRNTSTTRRKTELVIVATVSLVEPVSSANITIP--SIQRTSALSRFF 429

Query: 445 FNRVN 449
              +N
Sbjct: 430 GVNLN 434


>gi|119566857|gb|ABL84265.1| RcpA [Yersinia ruckeri]
          Length = 438

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L    
Sbjct: 31  HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++  
Sbjct: 91  NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150

Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +        +  Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G
Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + SG       + G                      T++ A+   +  R LAEP L+ +S
Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
           G++ASF  GG+    + + +T   +V+  ++G+ L+    V    RI +++  EVS    
Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 309

Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P+ R RKA TTVEL  G + +L GL+  + ++  + IPL+  IPILGALF
Sbjct: 310 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 369

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R +    + +E+ + AT  LVKP+  +D+  PD  +      + FF    N  +  +   
Sbjct: 370 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 423

Query: 459 EVEGQNYKGAIGFI 472
           E   + +    GFI
Sbjct: 424 EKLAKKFLSQGGFI 437


>gi|296124072|ref|YP_003631850.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296016412|gb|ADG69651.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 772

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 107/515 (20%), Positives = 198/515 (38%), Gaps = 64/515 (12%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAA--VINISDVEIGKGKKISIGLNKVIILQVPVD 65
              + ++ L      V  +    +++ A  +  + +      + + +   +  ++    +
Sbjct: 131 VPAVNALPLPQRAVPVRTVQDSNQSDTARQLHRLIESMPSSEEDLEVIHRRSQLIVTRAN 190

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI----------L 115
           V    ++DP   DVV + PR + + G + G   + L      + L   +           
Sbjct: 191 VIRAAIADPNVIDVVQYGPREISIIGVSRGTTTLTLWFEGAAEPLIYLVKVIRDPALDFQ 250

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR-- 173
              D   LE  L+    +S + +  +S  +V+ G  R  +++   + +    +       
Sbjct: 251 RRLDYGKLEKKLQTLFPNSKVYLIPMSYKIVVRGQARDAEEAAHILSIVRGEVINQEGSL 310

Query: 174 ---------------------------------NQYANSSSKKVMNLLNIAGEDQVTLKV 200
                                               ++ ++  ++N L + GE QV+L V
Sbjct: 311 GGPQPFLGGLGGDLGGGSSTIDNGAIGGIGNSFGGASDLAAGFIINELRVPGEFQVSLTV 370

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            IAE+ R  + + G   S+  + S   +S            GG  ++ G+ D      +L
Sbjct: 371 RIAELNRSEMFKAGADISVLFNGSQLIESSLT---------GGAATLGGIFDNGDVSILL 421

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVVLHF 318
             L+     + L EP LT +SG+ A F +GG+         +     S T   +G  +  
Sbjct: 422 DWLKTNGIGKILVEPRLTVLSGRQARFLAGGEFAVPTIIGIAGAQGQSTTFRGFGTSVLV 481

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TPTVL    I L    E S+     +   +P    R+ DTTVE+  G T+ LAGL    +
Sbjct: 482 TPTVLDRDLIRLSTIAEYSDLNQANSVQGIPGTNARRIDTTVEMREGQTLALAGLYSHLM 541

Query: 379 QQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR-PDDHYSV 436
           +     IP L  IP +G ALF      ++E E+ I  TP +V+P+   ++   P    + 
Sbjct: 542 KTNISKIPFLGDIPKIGPALFSRKEKTQDENELLILITPDIVRPMDPEEVPPVPGFEVTY 601

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNY-KGAIG 470
             D + F++NR+    G  +    +   Y  G+ G
Sbjct: 602 PGDHEFFWYNRIE---GTPDTGHYQVPPYGSGSNG 633


>gi|32473554|ref|NP_866548.1| outer membrane channel for pilus assembly CpaC [Rhodopirellula
           baltica SH 1]
 gi|32398234|emb|CAD78329.1| putative outer membrane channel for pilus assembly CpaC
           [Rhodopirellula baltica SH 1]
          Length = 589

 Score =  261 bits (667), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 113/455 (24%), Positives = 193/455 (42%), Gaps = 36/455 (7%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGK------KISIGLNKVIILQVPVDVQDV 69
           L ++   +A L   +   A          G  +      ++ + +    IL +   +   
Sbjct: 20  LLATAFGLAMLSVSQPVMAQSATTLASAAGDHQINQTVERMDLIVKSSRILSLGERIPRF 79

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V +         S   + +FGK  G   + L   + K +  +D+ +  D   +E  L  
Sbjct: 80  QVHNEEVLGATPVSENQIQVFGKTPGTTQINLWDTEDK-LYTIDVTVVADAREVEGILNS 138

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +  +++RV  + ++ ++ G V ++ D  +AV ++E F +              V+N + 
Sbjct: 139 QLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VINNIQ 185

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GKFVS 240
           + G  QV L   I EV R  L+++G   +I   +     GPS       G       F  
Sbjct: 186 VVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAGFGP 245

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                +        +FET+++AL      + LAEPT+ A  G+ A FT GG+     V  
Sbjct: 246 IPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TIVPG 304

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRVRKA 356
             G   +T  DYG  + F P V+ PGRI L ++ EVSEP       VN  ++ ++  R  
Sbjct: 305 QNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTTRYV 364

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T VE+ +G T  LAGLL+   +      P    +P +G LFR  +  R E E+ I  TP
Sbjct: 365 ETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLILVTP 424

Query: 417 FLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
            LV+ +   ++ R  P  +    DD + + +  + 
Sbjct: 425 ELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 459


>gi|254506218|ref|ZP_05118362.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219551036|gb|EED28017.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 431

 Score =  261 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 105/413 (25%), Positives = 186/413 (45%), Gaps = 34/413 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G  +   +    ++  V +SDP  AD  V     + +FGK VG  +++    + + +
Sbjct: 12  MNLGEGEAKAINTKAEIASVFISDPQIADYQVVDKNKLVIFGKKVGTVSLLAFDDNSETI 71

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           ++  +++ + + H++  ++    D +I +  + + VVL G V + +       L    L+
Sbjct: 72  ISRKLVVNQSLIHIQQQVQIRYPDVSISIYNLGEQVVLAGKVPSEKIRDEINILVGELLN 131

Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +   +                      K ++N + ++   QV +K++IAEV +  L+Q G
Sbjct: 132 KEYEDYKIEWDLGENTYEMEFMTRRHYKGIVNNIEVSTTKQVNVKLSIAEVSQSFLEQFG 191

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            ++    SS+        D    F +                 +V+ A+      + LAE
Sbjct: 192 VKYGTLDSSANFMGGTFVDQLINFSAA-------------DIVSVISAIGDDAVGQVLAE 238

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG++ASF  GG+    TV    G T+V   ++G+ L     VL   +I L +  
Sbjct: 239 PNLSVISGETASFLVGGEIPVVTVV--DGGTNVLFKEFGIRLEMMAKVLQDDKIKLSLMP 296

Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS            +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +P
Sbjct: 297 EVSSLDTQYQNDRYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLSRVPFIGDVP 356

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           ILGALFR++   R +TE+ I AT  LVKPV    +  P          + FF 
Sbjct: 357 ILGALFRHTETVRNKTELVIVATVNLVKPVNPSQIQLPT--MKRTTTMQRFFN 407


>gi|238755450|ref|ZP_04616790.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
 gi|238706291|gb|EEP98668.1| Type II/III secretion system protein [Yersinia ruckeri ATCC 29473]
          Length = 430

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/434 (24%), Positives = 191/434 (44%), Gaps = 34/434 (7%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L    
Sbjct: 23  HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++  
Sbjct: 83  NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 142

Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +        +  Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G
Sbjct: 143 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 202

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + SG       + G                      T++ A+   +  R LAEP L+ +S
Sbjct: 203 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 243

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV- 340
           G++ASF  GG+    + + +T   +V+  ++G+ L+    V    RI +++  EVS    
Sbjct: 244 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEVSSLDK 301

Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P+ R RKA TTVEL  G + +L GL+  + ++  + IPL+  IPILGALF
Sbjct: 302 MFNVDGGSSYPALRTRKAGTTVELGDGESFILGGLISREDKENLKKIPLIGDIPILGALF 361

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           R +    + +E+ + AT  LVKP+  +D+  PD  +      + FF    N  +  +   
Sbjct: 362 RKTGTQTKRSELVVIATVNLVKPMQSKDVGLPD--FMKTSTLERFF----NYTFIRESKQ 415

Query: 459 EVEGQNYKGAIGFI 472
           E   + +    GFI
Sbjct: 416 EKLAKKFLSQGGFI 429


>gi|251791991|ref|YP_003006711.1| RcpA [Aggregatibacter aphrophilus NJ8700]
 gi|247533378|gb|ACS96624.1| RcpA [Aggregatibacter aphrophilus NJ8700]
          Length = 460

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 102/430 (23%), Positives = 190/430 (44%), Gaps = 29/430 (6%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P+ AD  +    T  ++ K+ 
Sbjct: 17  AVLGAMFSLNAYAQNFSLEKGATQLVQTKEKIDTIFVSSPSVADYEILDDNTFIIYAKDE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+A V   G DG+ + +  + ++  + ++      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GKAEVTAFGADGRPLTSDTVNVDSVVTNIADTNKQLKTHFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
           RT ++S     +    L    +       ++            V++  NI    Q+ +K+
Sbjct: 137 RTQEESDEVRRIVGEALGTGRKVTETKLGNESVPFLDKYSYEGVVDHSNINDTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFET 258
           T+ EV + + + +G   S    S           GG F + GG    +GVL  D      
Sbjct: 197 TVVEVNKKLSEAMGINWSHIAGS-------GPLLGGNFSAAGGFNGTQGVLRLDAKGISA 249

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            ++AL+  +  + LAEP ++ +SG++A    GG+  +       G+ S+   ++GV L  
Sbjct: 250 FINALDNQSNGKILAEPNISMLSGETADILVGGEIPFAQ-RDKEGSPSIIYKEFGVKLAV 308

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
              +    RI L +   VS      N    G++P +  R+A +  E+ +G + ++ GL  
Sbjct: 309 AAKLQKNNRIRLVLDQSVSTLAGNYNFEGIGNIPYFDTRRAKSLFEVANGESFIIGGLFS 368

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            +  +    +PLL  +PILG+ FRN+  NRE+ E+ I AT  +VKPV  +++  PD  + 
Sbjct: 369 SNDVEGINKVPLLGDVPILGSFFRNASTNREKKELVIVATVNVVKPVEEKNIVYPD--FE 426

Query: 436 VEDDAKAFFF 445
                + FF 
Sbjct: 427 QTGTMERFFH 436


>gi|238793622|ref|ZP_04637245.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
 gi|238727037|gb|EEQ18568.1| Type II/III secretion system protein [Yersinia intermedia ATCC
           29909]
          Length = 425

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 106/420 (25%), Positives = 183/420 (43%), Gaps = 30/420 (7%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A  I  + V     K + +   +  I++   ++  V VS    AD  +    ++ ++ K 
Sbjct: 4   AIAICQTVVNQAYAKPVYLSSGESYIIKTEEEIDTVFVSTAAIADYELVGKNSIIVYAKK 63

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G A  IL   D   M+   I++   I      ++    DSN+ +  + ++ +L G   +
Sbjct: 64  EGTAEFILFNKDNHPMIKTTIMVNDIITSAYQRIKIEYPDSNVEINKIGNSYLLTGKAES 123

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKK-----VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +       +    +++       +          V+N + +   +QV +K+TIAEV +D
Sbjct: 124 EEAKDTIAAIIGEAINKKREQNREDQHFNNPNYLGVINKIKLPESNQVNVKLTIAEVTKD 183

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
             + IG   S    +S  S  F                     +     T++HA+   + 
Sbjct: 184 FSENIGVDWSSISEASVGSFKFL------------------KFNATGISTLVHAINDDSI 225

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ +SG+SASF  GG+      + ++  T +    YG+ L+    V    RI
Sbjct: 226 ARVLAEPNLSVLSGESASFLVGGEIPMFNTNQNS--TIIKYKTYGIKLNIAAKVNEKNRI 283

Query: 329 GLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + ++ EVS              PS R RKA TT+EL  G + +L GL+    ++  + I
Sbjct: 284 RISMEEEVSSVDKVFNVEGGNAYPSLRTRKAATTLELGDGESFILGGLISKSERESLKKI 343

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P +  IPILGA FRN++  +++TE+ + AT  LV PVA +D+  PD  +      +  F 
Sbjct: 344 PFIGDIPILGAFFRNAQTQKQQTELVVVATVSLVNPVAGKDVELPD--FMHTSTLERLFN 401


>gi|293391332|ref|ZP_06635666.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|32452623|gb|AAP43985.1| RcpA [Aggregatibacter actinomycetemcomitans]
 gi|290951866|gb|EFE01985.1| type II/IV secretion system secretin RcpA/CpaC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 460

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 94/428 (21%), Positives = 180/428 (42%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    +  ++ K  
Sbjct: 17  AVLGAMSSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNSFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGVDGRPLTSDTVNVDSVVTSIADTNKQLKSHFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK-----------KVMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGNGRKITETKLGEDALPFLDKYHYDGVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLLGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + LAEP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLAEPNISMLSGETADILVGGEIPFAQ-RDKDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNDRIRLALDQSVSTIAGNYNFEGVGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FRN+   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRNATTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|26000712|gb|AAN75208.1| RcpA [Aggregatibacter actinomycetemcomitans]
          Length = 460

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 93/428 (21%), Positives = 179/428 (41%), Gaps = 25/428 (5%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV+          +  S+      ++Q    +  + VS P  AD  +    T  ++ K  
Sbjct: 17  AVLGAVFSLNAYAQNFSLDKGATQLVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEE 76

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMV 151
           G+  V   G DG+ + +  + ++  +  +      L+    ++N+ V+ V    V+ G  
Sbjct: 77  GRTEVTAFGADGRPLTSDTVNVDSVVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKA 136

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK-----------VMNLLNIAGEDQVTLKV 200
           R+ ++S     +    L    +                     V++  NIA   Q+ +K+
Sbjct: 137 RSQEESDEVRRIVGEALGSGRKVTETKLGEDSLPFLDKYHYDDVVDNANIADTTQINVKL 196

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           ++ EV + + + +G   S    S           GG   ++G        LD       +
Sbjct: 197 SVVEVNKKLSEAMGINWSHVAGSGPLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFI 251

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +AL+  +  + L EP ++ +SG++A    GG+  +       G+ ++   ++G+ L    
Sbjct: 252 NALDNQSNGKVLPEPNISMLSGETADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAA 310

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            +    RI L +   VS      N    G++P +  RKA +  E+ +G + ++ GL   +
Sbjct: 311 KLQKNNRIRLALDQTVSTIAGNYNFDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSN 370

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +    +PLL  IPILG+ FR++   R++ E+ I AT  +VKPV  +D+  PD  +   
Sbjct: 371 DLEGINKVPLLGDIPILGSFFRSATTERDKKELVIVATVNVVKPVNEKDVIYPD--FEKT 428

Query: 438 DDAKAFFF 445
              + FF 
Sbjct: 429 GTMERFFH 436


>gi|238782881|ref|ZP_04626910.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
 gi|238716304|gb|EEQ08287.1| Type II/III secretion system protein [Yersinia bercovieri ATCC
           43970]
          Length = 426

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 104/409 (25%), Positives = 186/409 (45%), Gaps = 31/409 (7%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
              K + I   +  I++   ++  V VS    AD  + +  ++ ++ K+ G   +IL   
Sbjct: 17  ANAKSVYISPGESYIIKTEAEIDTVFVSSAAVADYELVNKNSIIVYAKSEGTTEIILFDD 76

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             + +    IL+   I      +     DSNI ++ + D+ +L G+V + ++      + 
Sbjct: 77  KHQVLAKKTILVNNIINAANKRVLIEYPDSNIDIDKIGDSYILTGIVESEEEKDTLATIV 136

Query: 165 ETFLSQSGRNQY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              +             +      ++N L +   +QV +K+TIAEV +D  + +G   S 
Sbjct: 137 GEAIGSQKEKTSERQYLSTPDYAHIVNKLKLPQANQVNVKLTIAEVTKDFTENVGVDWST 196

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            G + G  +    +  G                     T++HA+   +  R LAEP L+ 
Sbjct: 197 MGDAIGSFQFVKFNANG-------------------ISTLVHAINDESIARVLAEPNLSV 237

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG+SASF  GG+      S++  + +VT  ++G+ L+    V    RI + +  EVS  
Sbjct: 238 LSGESASFLVGGEIPI--ASNTENSQTVTYKEFGIKLNIGAKVNEKKRIRILLNEEVSSI 295

Query: 340 VIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                       PS + RKA TT+EL  G + +L GL+ +  ++  + IP +  IPILGA
Sbjct: 296 GKSFSMEGGDSYPSLKTRKAATTLELGDGESFILGGLISNSERESLKKIPFIGDIPILGA 355

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           LFRN++  + +TE+ + AT  LVKPV+ +++  PD  +      +  F 
Sbjct: 356 LFRNAQTEQSQTELVVIATVNLVKPVSRKEIELPD--FMHTSTLERLFN 402


>gi|312116090|ref|YP_004013686.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311221219|gb|ADP72587.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 519

 Score =  260 bits (664), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 119/494 (24%), Positives = 209/494 (42%), Gaps = 55/494 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPP--------------IKEANAAVINISDVEIGKGKKI 50
            RT   ++         S                    ++   AA          +   +
Sbjct: 15  SRTLKLLICTIFLGLGASAYATEKPPSPVPPSKQPVKKVQGFGAAAPLYHLNTQNERIDV 74

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            + LN+   ++V     + LV++   ADVV  +  ++ + GK +G   + L+  D + + 
Sbjct: 75  RVVLNRSENVKVEYPFTEALVTNSDIADVVPLTNASINILGKKIGNTRLSLLDQDKRVIG 134

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
            +DI +  D+  L   +R   + SN+RV  V+  +++ G         RA+ L+E F   
Sbjct: 135 IVDIEVSHDVDMLRRVMRDNPSFSNLRVAAVNGRIMIAGQASDAVALSRALALAEQF--- 191

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK------------------- 211
                    +  +V N + +A   QV L+V   E  R++ +                   
Sbjct: 192 ---------APGQVTNAMTVASPQQVMLEVRFIEASRNLARGVGVNVSGGGRYAGGTTGV 242

Query: 212 -QIGFQHSITGSSSGPSKSFAADFGGKFVSEG---GDFSVKGVLDRFSFETVLHALERAT 267
             +  + SIT  S+G + +  +D      S     G  + + +      +  + ALE   
Sbjct: 243 ETLKEKSSITSDSTGITTNLISDLAAGLGSNLVPFGAMTGRVIGGSAPIDVTIRALESQG 302

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R LAEP L A+SG +ASF +GG+  +  V+ +    +     +G+ L FTPTVL+  +
Sbjct: 303 LARRLAEPNLVALSGDTASFLAGGEFPFP-VAGTNNTITTEFKKFGIGLAFTPTVLARRQ 361

Query: 328 IGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L+I+ EVSE        +   ++P   VR+A TTVEL  G +  +AGL++        
Sbjct: 362 INLKIEPEVSEIDYSAAVKIGNVEVPGLSVRRASTTVELRDGQSFAIAGLMQGFHNADTR 421

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKA 442
            +P +  +PILGAL R++ F ++ET++ I  TP LV+P+   D    P  +    +D + 
Sbjct: 422 QLPWIGDVPILGALTRSTSFQKKETDLVIIVTPCLVQPMVPGDAQGSPLANRRPGNDEEF 481

Query: 443 FFFNRVNKIYGPKE 456
           F   +         
Sbjct: 482 FIAGKQEVQTSRPR 495


>gi|323495637|ref|ZP_08100708.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
 gi|323319272|gb|EGA72212.1| type ii/iv secretion system secretin rcpa/cpac,associated with flp
           pilus assembly [Vibrio sinaloensis DSM 21326]
          Length = 440

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 103/413 (24%), Positives = 181/413 (43%), Gaps = 38/413 (9%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++G  +   +    ++  V +S+P  AD  V     + +FGK VG  +++    +   +
Sbjct: 25  VNLGEGEAKAITTKQEIASVFISNPEIADYQVVDKNKLVVFGKKVGSVSLLAFDDNSNTI 84

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           ++  +++ + + H++  ++    + +I +  + + VVL G V + +       L    L 
Sbjct: 85  VSRKLVVNKSLIHIQQQIQLRYPNISISLYNLEEQVVLAGKVPSEKIRDEINILVGELLE 144

Query: 170 QSGRNQY---------------ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           +   +                        ++N + +A   QV +K++IAEV +  L++ G
Sbjct: 145 KEYEDHKIEWKIGTETYEMEFMTRRHYLGIVNNIEVATTKQVNVKLSIAEVSQSFLEEFG 204

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            Q+  +G  +G       +F                       +V+ AL   T  + LAE
Sbjct: 205 VQYGSSGQGAGTFVDQLVNFSAS-----------------DIVSVITALGDDTVGQVLAE 247

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ ISG+SA F  GG+    T+    G T+V   ++G+ L     VL   +I L +  
Sbjct: 248 PNLSVISGESAHFLVGGELPVVTII--DGGTNVLYKEFGIRLEMMAKVLEDDKIKLSLLP 305

Query: 335 EVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           EVS            +P+ + R+A TTVEL  G + VL GLL  + ++    +P +  +P
Sbjct: 306 EVSSIDSQYQNERYSLPALKTRRARTTVELGDGQSFVLGGLLSTEDRESLRRVPFIGDVP 365

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           ILGALFR+S   R  TE+ I AT  LV PV    +  P          + FF 
Sbjct: 366 ILGALFRHSETVRNRTELVIVATVNLVNPVNPSQIQLPT--MKRTTTMQRFFN 416


>gi|85707702|ref|ZP_01038768.1| type II secretion system protein [Erythrobacter sp. NAP1]
 gi|85689236|gb|EAQ29239.1| type II secretion system protein [Erythrobacter sp. NAP1]
          Length = 576

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 126/484 (26%), Positives = 213/484 (44%), Gaps = 67/484 (13%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              +    +I I + +  ++QVP  + DV V++   ADV + S R +Y+FG++ G+  + 
Sbjct: 59  QQVVSPSDEIVISIGRGELVQVPGTMTDVFVANENVADVQIKSQRQLYVFGRSGGETTIY 118

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRTIQDSQR 159
                G+ + + ++ +  +I  ++  L   + ++ + V  +  +TV+L G V   +D+  
Sbjct: 119 ASDARGEVIFSANVRVGSNIGSIDQMLALAMPEAQVNVATMGTNTVLLTGTVAAPEDAAE 178

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ------- 212
           A  L   FL +             V+  L  A   QV L+V  AEV R +++        
Sbjct: 179 AERLVTAFLGEQA----------NVITRLKTATPLQVNLQVKFAEVSRSLVRAVSGNLTT 228

Query: 213 -----------------------------IGFQHSITGSSSGPSKSFAADF--------- 234
                                        +G    +     GP                 
Sbjct: 229 FDASTGGFRGAVGTGRTLGAGEFDFRNGPLGVGSGVQNPVVGPFIDPTTGLPILDANGNP 288

Query: 235 ----GGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTAISGQSASFT 288
               G    S     ++ G+   F  + +  L   ER   I T+++P LTA+SG++A+F 
Sbjct: 289 LTFTGPGIDSGTAGTTIAGLGRLFGLDALGALDLSERLGLITTISQPNLTALSGETATFL 348

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG+          G  ++   ++GV L +TPTVLS GRI +R++ EVSE      + +N
Sbjct: 349 AGGEFPIPIS-QGLGNVAIEYRNFGVSLAYTPTVLSNGRISIRVRPEVSELSSQGAVTLN 407

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+  +R+ +TTVEL SG + ++AGLL ++ Q   +  P L  +PILG LFR+  F 
Sbjct: 408 GFQVPALTIRRTETTVELGSGQSFMIAGLLSNNAQNALDKAPGLGDVPILGNLFRSRDFR 467

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           R ETE+ I  TP+LVKPV   D++ P D Y   ++ + F   R N     +         
Sbjct: 468 RGETELVIVVTPYLVKPVNASDIALPTDGYHSANELEQFIGFRDNDGVSGERRPGPTAAE 527

Query: 465 YKGA 468
               
Sbjct: 528 PDAP 531


>gi|86147184|ref|ZP_01065500.1| general secretion pathway protein D [Vibrio sp. MED222]
 gi|85835068|gb|EAQ53210.1| general secretion pathway protein D [Vibrio sp. MED222]
          Length = 439

 Score =  259 bits (661), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
                ++   +     +  ++  V +S    AD  V     + +FGKN+G A+ I     
Sbjct: 20  AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 79

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+++ N  +L+ +    +E  +     D+ + V  + + VVL G+V   Q+     +L  
Sbjct: 80  GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 139

Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
             L ++  +     S +                 V+N + I+   QV +K+TIAEV    
Sbjct: 140 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 199

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           ++  G +    G                  + G               +V+ AL   +  
Sbjct: 200 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 241

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L     VL   +I 
Sbjct: 242 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 299

Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +  EVS      ++ +  +P+ R R+A TTVEL  G + VL GLL  + ++    IP 
Sbjct: 300 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 359

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  IPI+GALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 360 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 403


>gi|218708107|ref|YP_002415728.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
 gi|218321126|emb|CAV17076.1| putative bacterial type II secretion system protein D; rcpA, CpaC
           [Vibrio splendidus LGP32]
          Length = 435

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 109/404 (26%), Positives = 178/404 (44%), Gaps = 38/404 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
                ++   +     +  ++  V +S    AD  V     + +FGKN+G A+ I     
Sbjct: 16  AQGSTNLAQGEAKTFSIRGEIASVFISGKNIADYQVIDSNKVVVFGKNIGSASFIAFDAK 75

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+++ N  +L+ +    +E  +     D+ + V  + + VVL G+V   Q+     +L  
Sbjct: 76  GRELFNRLLLVNKSYREIEQQIDVLFPDAEVFVAGIGENVVLSGVVANEQEKDNIHQLVG 135

Query: 166 TFLSQSGRNQYANSSSK----------------KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
             L ++  +     S +                 V+N + I+   QV +K+TIAEV    
Sbjct: 136 ELLGKTANSTSFQMSDEESDDIDVGFMTQLNYAGVVNNIEISATKQVNVKLTIAEVSHSF 195

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           ++  G +    G                  + G               +V+ AL   +  
Sbjct: 196 MQDFGIKMGSNG------------------TPGIFVDQLTHFSASDIVSVISALGTDSVG 237

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L     VL   +I 
Sbjct: 238 QVLAEPNLSVISGEKASFLVGGELPVVTVI--DGATNVEYKEFGVRLELLAKVLRDDKIK 295

Query: 330 LRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +  EVS      ++ +  +P+ R R+A TTVEL  G + VL GLL  + ++    IP 
Sbjct: 296 LALTPEVSSLDGSYSSDNFDLPALRTRRAQTTVELGDGQSFVLGGLLNSEEKESLTRIPY 355

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  IPI+GALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 356 IGDIPIIGALFRHTGTERSKTELVIVATVNLVQPVKAEQIQLPT 399


>gi|302391029|ref|YP_003826849.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302203106|gb|ADL11784.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 414

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 97/375 (25%), Positives = 169/375 (45%), Gaps = 27/375 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +G  K  +L+V VD++   V+DP  AD+V  S   + + GK+ G   + L    G + 
Sbjct: 34  LQLGTGKSELLKV-VDLERAAVADPEVADIVTISQEELLINGKSEGTTTLHLWDQKGHR- 91

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
            +  + + ++ A +   ++  I    ++V  V + ++L G VR     QR  +++  F  
Sbjct: 92  -SYQVEVYKEEARVIKQIKELIGTDTVKVAKVEENIILSGKVRDQTQLQRVKKIAGVF-- 148

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                       +KV+N L +    QV L   + E+ + + +++GF           S  
Sbjct: 149 -----------GEKVINELQVTNSLQVLLAAQVFEIDKAVSEELGFDWYS-----TNSGG 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +       +    F +      +   T L AL      + LA+P L   SGQ ASF  
Sbjct: 193 VESGTATLGETTTSRFGIGHYERLYQLRTKLKALIEDGKAKLLAKPKLVTKSGQKASFNV 252

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----N 344
           GG+    T  SS   T V   +YGV     PTV   G++   +  +VS+          N
Sbjct: 253 GGEIPVVTADSSGEQTVV-WKNYGVQFEVEPTVTPTGKLETYLHPKVSQLDWANAVDYGN 311

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +G +P+ +  +  T V +  G  + + GLL+    +  + IPLLS++PILG LF++  F 
Sbjct: 312 SGQLPAIKSSEVKTQVVIKDGAALAIGGLLQQYRSEDIKRIPLLSQLPILGELFKSKSFR 371

Query: 405 REETEIFIAATPFLV 419
            E++E+ I  TP ++
Sbjct: 372 EEKSELIILVTPKII 386


>gi|294102189|ref|YP_003554047.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293617169|gb|ADE57323.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 384

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 102/423 (24%), Positives = 168/423 (39%), Gaps = 45/423 (10%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  L+R  +   ++   +       +                         + +    +L
Sbjct: 1   MACLKRKLWVFFAVVFLTVVVGALPVLAA-------------------TYHLDVGDSAVL 41

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +   +V+ + V +P   D +      + L GK  G A +I+    G  M  + +    + 
Sbjct: 42  KY-QNVKRMSVGNPDVLDAIPLDNNQVLLTGKVEGGAALIVWDAAGMHMEKILVHPSIEA 100

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
              E  L+  +   NI V +    VVL G V+T +D  RAV ++  F             
Sbjct: 101 PSWE--LKELLQAENIDVTVRGGAVVLEGKVKTPRDRLRAVAIAGAF------------- 145

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
            +KV+NLL +    Q+ L+  + EV++     +G          G   +F   F     +
Sbjct: 146 GEKVINLLEVDSAPQIKLRAVVMEVKKKDGDALG-----MKRLEGQEGTFWGIFDLTPDT 200

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                  KG          ++AL      + L+ P LT +SG+ AS   GG+        
Sbjct: 201 GHMLDYTKGAHYSAKINAWINALVENKEAKILSRPYLTTLSGEEASLNVGGEIPVPVGVD 260

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
           +     +    YGV++ FTP +   G I L  + EVSE      I      +P+ R RK 
Sbjct: 261 NN-EIKIEWKPYGVIMKFTPELDGIGEIWLTFEAEVSEIDWENAIETQGIKIPAIRTRKI 319

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V L    ++V+ GLL +   +L + IPLL  IPI+G LF++  F  +ETE+ I  TP
Sbjct: 320 ANKVRLGHNESLVVGGLLDNKQSKLVKKIPLLGDIPIIGELFKSREFTNDETELVITVTP 379

Query: 417 FLV 419
            +V
Sbjct: 380 EVV 382


>gi|239814526|ref|YP_002943436.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239801103|gb|ACS18170.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 504

 Score =  258 bits (659), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 123/453 (27%), Positives = 204/453 (45%), Gaps = 59/453 (13%)

Query: 54  LNKVIILQVPVDVQDVLVSD----------------------------PTKADVVV--HS 83
           L K +++ +   V  ++VS                                ADV V   S
Sbjct: 68  LGKSVVIPLKARVARIVVSGQPPSRAPAAAPAAAGQPAPAPATAANAGDGIADVDVTLLS 127

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVS 142
           P  ++  G+  G  NV+L   DG      D+++  D   L+  L   + + N IRV    
Sbjct: 128 PTDLFFRGRQAGSMNVVLQSVDGTC-YIKDVIVTIDPGALQSKLAELMPEENHIRVRSAE 186

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            ++VL G +         + L+  +           +  KKV+NLL +    QV L+V I
Sbjct: 187 KSIVLTGEISDALKLDDVMSLAMAY----------GADGKKVVNLLRVTAPQQVMLEVKI 236

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV + +L ++G +  +  S +G     +      F+S GG       + R S    +  
Sbjct: 237 AEVSKTLLDRLGARVGL--SRTGGGGRDSYSLISSFLSGGGGLLEAIRIGRTSVG--IDG 292

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHF 318
            +    +R LAEP + AISGQ ASF SGG+       S         ++   ++G+ + F
Sbjct: 293 QKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSAAGGGGTNITLEEKEFGIGVKF 352

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVL 370
           TPTVL+ GR+ L++ +EVS+     +           +PS  VR+ADTTV+L  G + V+
Sbjct: 353 TPTVLNGGRVNLKMISEVSDLSQTGSPFTTVTGVTAVLPSLTVRRADTTVQLNDGQSFVI 412

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+K ++ +  +  P L ++P++GALFR++ F  ++TE+    TP LV+P+A      P
Sbjct: 413 AGLIKSNVTESIKRYPGLGEVPVMGALFRSTEFQNDQTELMFVITPRLVRPLA-EAPRVP 471

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            D++ V   A+ +    +        A   + Q
Sbjct: 472 TDNHVVPSRAEVYLNGSLESATPAPVAPAGQPQ 504


>gi|171921001|gb|ACB59184.1| RcpA [Actinobacillus suis ATCC 33415]
          Length = 460

 Score =  258 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 92/424 (21%), Positives = 176/424 (41%), Gaps = 25/424 (5%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +       K  ++   +  +++    +  V VS P  AD  +    T  L+ K  G+A +
Sbjct: 20  AFSHTAAAKTFTLEQGQSQLIKTDAKIDTVFVSSPDIADYEILDDNTFMLYAKAEGRAEI 79

Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           +    DG  +            +IA     ++    +SN+ V+ +    V+ G  +   +
Sbjct: 80  VAFDVDGTPLTEDFINVNNAINNIAATNEQIQTRFPNSNLSVKKIGKAYVIEGKAKNAAE 139

Query: 157 SQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIA 203
           S+    +    L    +   A                 + ++N  N     Q+ +K+T+A
Sbjct: 140 SEEINRIVGESLGAGKKVVEAKVEGSEDAIPFLDKYQYEGIINNANEEDATQINVKLTVA 199

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           EV +    +IG   +    +   +   AA  GG   S G       +++  +   +L AL
Sbjct: 200 EVNKTFSDEIGINWNNLSGNFFRNLGSAAINGGFGKSGGQ----LALVNSNNLNVLLSAL 255

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +     + LAEP ++ +SG++A    GG+  +    +  G  +V   ++G+ L     V 
Sbjct: 256 DNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RNRDGELNVLYKEFGIKLAVGAKVQ 314

Query: 324 SPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              RI L +   VS       ++   +P +  R++ +T E+ +G + +++GLL     + 
Sbjct: 315 KSDRIRLLLSQSVSTIAGNYEIDDNHIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEG 374

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
            + +P L  +PILGA FR++  +RE  E+ + AT  LVKPV    +  P   +      +
Sbjct: 375 IKKVPFLGDVPILGAFFRSANSSRESKELVVVATVNLVKPVDGSQILYPT--FENTGTME 432

Query: 442 AFFF 445
            FF 
Sbjct: 433 RFFN 436


>gi|320158383|ref|YP_004190761.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
 gi|319933695|gb|ADV88558.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus MO6-24/O]
          Length = 441

 Score =  257 bits (657), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 104/448 (23%), Positives = 187/448 (41%), Gaps = 43/448 (9%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           + + +   + +++       + +   +  V V DP  AD  +     + ++G   G  +V
Sbjct: 16  ASLSVNSNELMNLNQGSAKTISLKRQISTVFVGDPEIADYKIIDETKVVVYGVGQGATSV 75

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           I+    G ++ N ++++ + +  ++ TL     D +I +  V + VVL G+V + +   +
Sbjct: 76  IVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSDEIKTQ 135

Query: 160 AVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
                   L ++                   +  A      ++N L +   +Q+ +K+T+
Sbjct: 136 IYRTVGEMLKKNSTRDTFTLKDANGDEVDSLDYTATYIYDNIINNLKVLTTEQINVKLTV 195

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           AEV    L ++G  +S +G                    G   +            V+ A
Sbjct: 196 AEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIVAVITA 237

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
                  R LAEP L+ ISG++ASF  GG+             +++  +YGV L     V
Sbjct: 238 SGDDQIGRVLAEPNLSVISGETASFLVGGEIPIAIRDEDG--ITISYKEYGVKLSMVAKV 295

Query: 323 LSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
                I L +  EVS             ++P+ R RKA TTV+L  G + VLAGLL  + 
Sbjct: 296 TDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGLLTSEE 355

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++    IP+L  IPILGALF +++ N+ +TE+ I AT  LV PV   D+  P   +    
Sbjct: 356 RESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--SFRRTS 413

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           D +      ++ +  P+    +    + 
Sbjct: 414 DIERLLRIDLSSMNEPELEDTLNKGGFN 441


>gi|296121060|ref|YP_003628838.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296013400|gb|ADG66639.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 622

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 111/495 (22%), Positives = 195/495 (39%), Gaps = 41/495 (8%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAK---LPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
           R+     + +     F S P +     +   +  NA V            K+ I      
Sbjct: 9   RWRAALVWGLCLCQSFLSYPGLTSSSGMAFAQNGNAPVAGEVVQITASRTKLEIAERFAR 68

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++Q P  +  V   DP    V   +   + + G   G   +++   +G  +  +D+++  
Sbjct: 69  VVQFPRKILRVDGFDPAVLSVTALAHDQLRVQGITEGITTMVITDENGA-ITTIDVMVAG 127

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L+  L R   ++++ V  + D V+L G V   Q     V++++ +           
Sbjct: 128 DARLLQAVLSREYPNTSVTVTKLKDNVLLRGWVVEPQQITEIVDIAKLYYP--------- 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------ 232
                V+N + + G  QV L+  + EV+R  L+ +G   +  G +   S +  A      
Sbjct: 179 ----NVLNQMKMGGPQQVQLRCKVMEVQRSKLRSLGLNFTYLGRNVAFSSTPGAISPLDA 234

Query: 233 ------DFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G  +++ G      S+  V D F+F  +L AL     ++  AEPT+   SG
Sbjct: 235 FTVPIGGPPGVGLAQSGFRNATMSLGIVGDDFAFGGLLEALREEGLLKIQAEPTIVTRSG 294

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
           + A   SGG+     V    G  ++   ++GV L   P +LSP R+   I  EVSE    
Sbjct: 295 EPAKIVSGGEFPIP-VPQGLGTIAIEWREFGVRLESVPMILSPNRLKQTIIAEVSERDLT 353

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             + +N+  +P    R  +T VE+  G T+ + GL+          IP L ++P +GA F
Sbjct: 354 NAVTLNSTTVPGLTKRTVETQVEMNFGQTLAIGGLISSRKTAQTSKIPFLGELPYVGAAF 413

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKI-YGPK 455
           R   ++  ETE+ +  TP  V  +    +    P    +V  D + F    +    YG  
Sbjct: 414 RRVNYDEAETELLVLITPEFVSAMDPAQVPDRLPGTASAVPTDRELFGQGIIEVPNYGDP 473

Query: 456 EASEVEGQNYKGAIG 470
             +           G
Sbjct: 474 CPNCGPRGGSSTPSG 488


>gi|33152386|ref|NP_873739.1| rough colony protein A [Haemophilus ducreyi 35000HP]
 gi|21326707|gb|AAL92467.1| RcpA [Haemophilus ducreyi]
 gi|33148609|gb|AAP96128.1| rough colony protein A [Haemophilus ducreyi 35000HP]
          Length = 456

 Score =  256 bits (654), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 84/418 (20%), Positives = 183/418 (43%), Gaps = 24/418 (5%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  + VS P  AD  +    +  L+ K  G+  +++  
Sbjct: 23  PSLAKTFNLEQGQTKLIKTKTKIDTIFVSSPEVADYQILDDNSFMLYAKGEGKTEIVVFD 82

Query: 104 HDGKQMLNLDILIER---DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G  +    + +     +I+     ++    +SN+ V+ +    V+ G  +   +++  
Sbjct: 83  FEGNALTEDVVSVNNMINNISETNQQIQTRFPNSNLTVKKIGKAYVVEGKAKNEAETEDV 142

Query: 161 VELSETFLSQSGRNQYANSSSKKV-----------MNLLNIAGEDQVTLKVTIAEVRRDI 209
           + +    L         N + ++V           +N    +   Q+ +K+T+AEV +  
Sbjct: 143 IRVVGEALGAGKNVTSKNLAGEQVPFLNNYQYEGIINNTTASDATQINVKLTVAEVNKKF 202

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
             +IG   S    +   + +  A  GG     G +     ++++ + + ++ AL+  +  
Sbjct: 203 SDEIGIHWSNLSGNFFKNLTNLAIQGG----FGPEGGKLALVNQDNLQMLVTALDNQSNG 258

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LAEP ++ +SG++A    GG+     +    G+ +V   ++G+ L     +    RI 
Sbjct: 259 KILAEPNISMLSGETADILVGGEVPI--IERKDGSPTVKYKEFGIKLAVGAKLQKNDRIR 316

Query: 330 LRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L +  EVS       ++   +P +  R++ +T E+ +G + +++GLL  +  +    +P 
Sbjct: 317 LALSQEVSTIAGSFKLDQDSLPIFNTRRSKSTFEVGNGESFIVSGLLNKEDIESITKVPG 376

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           L  IPILGA FR++  +R   E+ + AT  LVKPV   ++  P   +      + FF 
Sbjct: 377 LGDIPILGAFFRSANTSRGSKELVVIATVNLVKPVDGSEILYPT--FENTGTMERFFN 432


>gi|15602717|ref|NP_245789.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721161|gb|AAK02936.1| RcpA [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 470

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 95/424 (22%), Positives = 174/424 (41%), Gaps = 30/424 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K  ++      +++    +  + VS P+ AD  +    +  ++ K  G+A V   G DG
Sbjct: 28  SKTFNLEQGGTKLVRTDEKIDTIFVSSPSVADYEILDDNSFIIYAKEEGRAEVTAFGQDG 87

Query: 107 KQMLNLDILIERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           K +    I +   I+++         ++    +SN+ V+ V    V+ G  RT ++S+ A
Sbjct: 88  KPLTTDFINVNPLISNINDISDTNRQIKARFPNSNLSVKKVGKAYVIEGKARTQEESEEA 147

Query: 161 VELSETFLSQSGRNQYANSSS----------------KKVMNLLNIAGEDQVTLKVTIAE 204
             +    L  S +    + +                   V+N  ++A   Q+ +K+++ E
Sbjct: 148 HRIVGEALGNSKKVTETSFNRSEGVKEYIPFLDKYQFDGVINNASVADSTQINVKLSVVE 207

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V + + + +G            S               G       ++       ++AL 
Sbjct: 208 VNKKLTEALGINWGRVVGVH--SGPLLGGSVSLSGGFSGSGGSTLNINATGVSAFINALN 265

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + LAEP+++ +SG++A    GG+  +        AT +   ++GV L     V  
Sbjct: 266 NQDNGKILAEPSISLLSGETADILVGGELPFAQKDKEGSATII-YKEFGVKLIVGAKVQK 324

Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             RI L +   VS         N G +P +  R+A +  E+  G + ++ GL      + 
Sbjct: 325 NKRIRLALDQSVSTIAGSYAYDNVGTVPYFNTRRAKSIFEVADGESFIIGGLFSSQDAEG 384

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  IPILG+ FRN+R +RE+ E+ I AT  +VKPV   D+  P   +      +
Sbjct: 385 INKVPLLGDIPILGSFFRNARTDREDKELVIVATVNVVKPVHESDIVYPT--FEQTGTME 442

Query: 442 AFFF 445
            FF 
Sbjct: 443 RFFN 446


>gi|328470518|gb|EGF41429.1| rough colony protein RcpA [Vibrio parahaemolyticus 10329]
          Length = 447

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V  +    +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G
Sbjct: 13  VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++I     G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +
Sbjct: 73  ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132

Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
              +        L +S +                 +  A    + ++N L +   DQ+ +
Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           K+T+AEV    L ++G  +             A   G      G   +            
Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           V+ A    +  + LAEP L+ ISG+SASF  GG+             SVT  +YGV L  
Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
              V     I L +  EVS              +PS R RKA TTV+L  G + VLAGLL
Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
             + Q+    IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P   +
Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
               D +      ++K+   +  + ++   + 
Sbjct: 416 KRTSDLERLLKLDLSKVDDEELENTIKAGGFN 447


>gi|327538064|gb|EGF24754.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 758

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 109/496 (21%), Positives = 186/496 (37%), Gaps = 62/496 (12%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
                +   PP   A        + EI     +S+ L +  IL++      + V D    
Sbjct: 164 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 223

Query: 78  DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123
              +    S R + + G   G   ++L   D     G+ +++  + +         +  L
Sbjct: 224 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 283

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163
           E  L     +S + ++ ++D +++ G      +  + +++                    
Sbjct: 284 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 343

Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208
             +  F+          +++++             ++N + I GE QV LKVT+AEV R 
Sbjct: 344 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 403

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
             + IG    +   + G +   +              ++   LD       + AL R   
Sbjct: 404 AARSIGLNFGVDNDN-GLTVFQSLTGNLANTQNQSGANILASLDMGQVRLAIEALRRLNL 462

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325
            RTLAEP L A++GQ A F +GGQ     +SS         V+   +GV L FTP +   
Sbjct: 463 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 522

Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             I L++  EVS     +            +     R   TTV+L SG TI +AGLL+ +
Sbjct: 523 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 582

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436
                +  P    +PI+GA    +R +  E E+ I  TP LV PV   +    P      
Sbjct: 583 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 642

Query: 437 EDDAKAFFFNRVNKIY 452
             D + F  NR+    
Sbjct: 643 PSDIEFFIANRLESRR 658


>gi|238789148|ref|ZP_04632936.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
 gi|238722680|gb|EEQ14332.1| Type II/III secretion system protein [Yersinia frederiksenii ATCC
           33641]
          Length = 415

 Score =  254 bits (648), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 111/441 (25%), Positives = 197/441 (44%), Gaps = 34/441 (7%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +   +    K + +   +  I+    ++  V VS    AD  +    ++ ++ KN G A 
Sbjct: 1   MITAQGANAKPVYLSAGESYIINTQDEINTVFVSAAAIADYELIGKNSIIVYAKNEGVAE 60

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
             L  HD K +    +L+   I  +   ++    +SNI +  +  + +L G+V + +   
Sbjct: 61  FTLFNHDHKAITKSVVLVNNIIPSVHRRIQAEYPESNIDINKIGSSYILTGLVESEEVRD 120

Query: 159 RAVELSETFLSQSGRNQY----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
             V +    +     N       N++   ++N + ++  +QV +K+TIAEV +D  + IG
Sbjct: 121 TVVNIIGEAIGSKRINNDRHPVGNTNHTNIINKIKLSQSNQVNVKLTIAEVTKDFTENIG 180

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S  G S G  + F                     +     T++HA+      R LAE
Sbjct: 181 INWSTIGESVGSFQLF-------------------KFNAKGISTLVHAINDNAIARVLAE 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L+ +SG+ ASF  GG+      + +   ++V+  ++G+ L+    V    RI + +  
Sbjct: 222 PNLSVLSGEDASFLVGGEIPIVNTTQNG--SAVSYKEFGIKLNIGAKVNDKKRIRIILNE 279

Query: 335 EVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS              PS R RKA TT+EL  G + +L GL+  + ++  + IPL+  I
Sbjct: 280 EVSSIGKTFNINGGDSYPSIRTRKAATTLELGDGESFILGGLISRNERESLKKIPLMGDI 339

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGA FRN++  + +TE+ + AT  LV PVA +++  PD  +      + FF    N  
Sbjct: 340 PLLGAFFRNAQTEQSQTELVVIATVNLVNPVAEKEVELPD--FMQTSTLERFF----NFT 393

Query: 452 YGPKEASEVEGQNYKGAIGFI 472
           +  +   E   + +    GFI
Sbjct: 394 HIMEIKREKAARAFLRKGGFI 414


>gi|225872754|ref|YP_002754211.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792181|gb|ACO32271.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 480

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 106/481 (22%), Positives = 187/481 (38%), Gaps = 32/481 (6%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVII 59
             +      M++ L +  P     P         A               + + + + + 
Sbjct: 7   TRRNLLHRAMTVALIAVLPLAGARPVNAAAAAETAQGPVDFVQLNNSNFMLHLLVGRSMF 66

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           L     ++ V VSDP   +    SP  + +  K  G +++++    G+      +  + D
Sbjct: 67  LDTATPLKRVYVSDPAVLNSFTASPHQVLITAKAPGISSLVVWDESGRS-NVYTVSSDID 125

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           ++ L+  +        I    + D V L G V T  ++  A +L++ +      +     
Sbjct: 126 VSGLQAAINAAFPHDMIHASALQDRVTLTGEVATESEAAAAEKLAQGYAKTVENSIDLAP 185

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---------- 229
                          QV LKV  AEV R   +Q+GF     G ++  + +          
Sbjct: 186 Q-----------RVQQVQLKVRFAEVDRTRAQQLGFNFISAGRNAAVTGTQQFPSFSNYT 234

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              +     ++      +       +    + ALE    ++ LAEPT+T+ISG  ASF S
Sbjct: 235 LGGNSTANPITVSNPLDLLLYSSDLNLGATIQALENDQVLQILAEPTITSISGVEASFLS 294

Query: 290 GGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IG 342
           GGQ  +  V   T    + +V    YGV L FTP V   G I L++  EVS       + 
Sbjct: 295 GGQFPFPVVQGGTTGFTSVTVQFRPYGVKLDFTPYVNPDGTIRLKVAPEVSALDYTNEVQ 354

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           ++   +P+   R+A T V L +G +  ++GLL   +    E +P +S+IPILG LFR+ +
Sbjct: 355 ISGYSIPAIDTRRAKTEVVLKNGQSFAISGLLDHRLTNDYERMPGISRIPILGQLFRSYQ 414

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
                T++ +  TP +V P+    ++      +        F  R+ K    K+      
Sbjct: 415 KQASTTDLIVIVTPTIVDPLHEPTVAPKLPALAKPYLDNKLFDQRLKKHPRHKKQKGNPP 474

Query: 463 Q 463
            
Sbjct: 475 P 475


>gi|28900576|ref|NP_800231.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|153836379|ref|ZP_01989046.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|260877521|ref|ZP_05889876.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|260901740|ref|ZP_05910135.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308095456|ref|ZP_05906034.2| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308125917|ref|ZP_05777993.2| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
 gi|28808956|dbj|BAC62064.1| rough colony protein RcpA [Vibrio parahaemolyticus RIMD 2210633]
 gi|149750281|gb|EDM61026.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ3810]
 gi|308087133|gb|EFO36828.1| rough colony protein RcpA [Vibrio parahaemolyticus Peru-466]
 gi|308090527|gb|EFO40222.1| rough colony protein RcpA [Vibrio parahaemolyticus AN-5034]
 gi|308108872|gb|EFO46412.1| rough colony protein RcpA [Vibrio parahaemolyticus AQ4037]
 gi|308114419|gb|EFO51959.1| rough colony protein RcpA [Vibrio parahaemolyticus K5030]
          Length = 447

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 111/452 (24%), Positives = 189/452 (41%), Gaps = 38/452 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           V  +    +  G+ +S+       + V  ++  V V+D   AD  V +   + ++G   G
Sbjct: 13  VALLLPASVSAGELLSLDKGAAKTINVKRNIDTVFVADTQIADYKVIANGKLVIYGIGRG 72

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++I     G ++ N ++++ + +  L+ T+     D +I++  + + +V+ G+V + +
Sbjct: 73  ATSIIAYDRAGNEIYNAEVVVNKSLRLLKQTIIARYPDEDIKLTNIGEQIVIDGVVSSEE 132

Query: 156 DSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVTL 198
              +        L +S +                 +  A    + ++N L +   DQ+ +
Sbjct: 133 IKDKVYRHVGEMLKKSKQRNTFELSGANGESVDPLDYTATYVFEDIINNLKVLTTDQINV 192

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           K+T+AEV    L ++G  +             A   G      G   +            
Sbjct: 193 KLTVAEVSSSFLTELGVSY-------------AETNGKSIGGAGQFVNKILDFTAEDIVA 239

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           V+ A    +  + LAEP L+ ISG+SASF  GG+             SVT  +YGV L  
Sbjct: 240 VISASGNDSIGQVLAEPNLSVISGESASFLVGGEIPITV--RDNDGISVTYKEYGVKLSM 297

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLL 374
              V     I L +  EVS              +PS R RKA TTV+L  G + VLAGLL
Sbjct: 298 VAKVTDSENIRLSLLPEVSSIDKTNGVNSGLVSVPSLRTRKAQTTVQLKDGQSFVLAGLL 357

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
             + Q+    IP L  IPILGALF  +   R +TE+ I AT  LV PV   D+  P   +
Sbjct: 358 TSEEQESLAKIPYLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKETDIKLP--KF 415

Query: 435 SVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
               D +      ++K+   +  + ++   + 
Sbjct: 416 ERTSDLERLLKLDLSKVDDEELENTIKAGGFN 447


>gi|299532592|ref|ZP_07045981.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719395|gb|EFI60363.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 520

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 125/495 (25%), Positives = 208/495 (42%), Gaps = 50/495 (10%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L  +   +       + P              +   +   I      ++ L K +++ + 
Sbjct: 3   LASSVPVLAQSAGTPAQPGPVAAAAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVVIPLN 62

Query: 64  VDVQDVLVS--DPTK-------------------ADVVVHSPRTMYLFGKNVGQANVILI 102
             +  +LVS   P                      +V + SPR ++  G+  G  NVIL 
Sbjct: 63  SPMARILVSGQTPGVGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMNVILQ 122

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAV 161
              G      D+++  D   L+  L   + +   IRV+   + +VL G +         V
Sbjct: 123 NAQGAC-FIKDVIVTMDPGPLQTKLSELMPEERGIRVQGADNALVLSGEISNPLRLDDVV 181

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
            L+  +           S SKK++NLL      QV L+V IAEV + +L ++G   S+ G
Sbjct: 182 TLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEVSKTLLDKLGA--SLAG 228

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +          F+S GG       + + S    +   +    +R LAEP + AIS
Sbjct: 229 QRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSIS--IDGQKDDGLVRILAEPNIMAIS 286

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           GQ ASF SGG+       S+T    V      ++G+ + FTPTVL   R+ L++ +EVS+
Sbjct: 287 GQQASFLSGGKIFIPVSQSNTNGVPVMTLEEKEFGIGVKFTPTVLGSSRVNLKLVSEVSD 346

Query: 339 PVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                +           +PS  VR+ADTTV+L  G ++V+AGL+K++I +  +  P L +
Sbjct: 347 LSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDGQSLVIAGLIKNNITEAVKRFPGLGE 406

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP+LGAL R++ F  ++TE+    TP LV+ +A      P D++     A+ +    +  
Sbjct: 407 IPVLGALARSTEFQTDQTELMFIITPRLVQALA-EAPRVPTDNHVPPSRAEVYLNGALES 465

Query: 451 IYGPKEASEVEGQNY 465
                    V     
Sbjct: 466 SKPASAVKTVPAATM 480


>gi|317491683|ref|ZP_07950118.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316920117|gb|EFV41441.1| type II and III secretion system protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 467

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 99/424 (23%), Positives = 193/424 (45%), Gaps = 42/424 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           + +++ +   +  ++QV  ++  + +S P  AD  +   R + ++ K+ G+ ++I    +
Sbjct: 38  RAQELYMDAGESQVIQVNGNIDTIFISAPKVADYEIIGERGVMVYAKSEGKTDLIAFDKN 97

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G Q++   ++++  ++ L+  +   + DS I ++ +  T +L G V T +D  R  ++  
Sbjct: 98  GDQLVKTTLVVDPILSSLQKKVSSLVPDSQITLQKMGKTYILSGSVATEEDRDRVYQIVG 157

Query: 166 TFLSQSGRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAE 204
             +  +        ++                     ++V+N L +   +QV +K+++ E
Sbjct: 158 EGVGATRTTNKKEVANTNGGSGGNGENSNSWLDEVVYQEVINQLKLPMTNQVNVKLSVVE 217

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V +     +G                     G   +           +  +  +++HA+ 
Sbjct: 218 VTKTFSDNVGIDWG--------------TISGSGGNITPGTFRFVKFNADTLSSLVHAIS 263

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  R LAEP L+ +SG+SA F  GG+     V+SS   ++V   D+G+ L+    V S
Sbjct: 264 NDSVARVLAEPNLSVLSGESAEFLVGGEVPV--VTSSANGSNVQYKDFGIKLNVGAKVSS 321

Query: 325 PGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             RI + +  EVS              P+++ R+A TTVEL  G + +L GL+ ++ ++ 
Sbjct: 322 NKRIRVTLGEEVSNVDSTYSTNAGDSFPAFQTRRAKTTVELADGESFLLGGLISNNEREE 381

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +P +  +PILGALFRN++  R   E+ + AT  LVKPV MRD+  PD  +       
Sbjct: 382 LSRLPFIGDVPILGALFRNAKTERSRGELVVVATVNLVKPVTMRDIVMPD--FQRTSTLS 439

Query: 442 AFFF 445
            F  
Sbjct: 440 RFLN 443


>gi|149188863|ref|ZP_01867153.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837283|gb|EDL54230.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 456

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 113/448 (25%), Positives = 197/448 (43%), Gaps = 52/448 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +Q+ + +  V +S+P  AD  + +  T+ +F   VGQ+ +I+ G +   +L
Sbjct: 34  SITLNDGQHIQLKMPIGKVFISNPAIADYKIINDNTLVVFANGVGQSRLIVYGTNNDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D++ +   L+    D+ ++V+ V + V + G+V + Q       L  T L +
Sbjct: 94  SDRIIVDLDLSEVRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEQTRDDIYRLVATLLGR 153

Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++  +                          + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKIKKWDKTEKLEFKSEHMERKEPESMVFARNMTWEGILERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           +    LAEP LT +SG+SASF  GG+      +S+    ++T  ++G+ L  T  VLS  
Sbjct: 255 SIAEVLAEPNLTVLSGESASFLVGGEVPVIVSTSNN--VNITFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    +      +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLSPEVSEVESYVEAAGVKVPQLASRRAMTTVELADGDSFILGGLMSSSDLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP +  +P+LGA FR +   R+ TE+ I AT  LV+P+  +D+  P  +         + 
Sbjct: 373 IPFIGDVPVLGAAFRKATTQRKRTELIIVATVNLVEPMKPKDIQLP--YIKKTSTLSRWL 430

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
                   G   AS           GFI
Sbjct: 431 N---VDADGKPVASSDATIRLLSQGGFI 455


>gi|52425834|ref|YP_088971.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52307886|gb|AAU38386.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 458

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 89/423 (21%), Positives = 173/423 (40%), Gaps = 30/423 (7%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            K + +       +++   +  + VS    AD  +    +  ++GK  G  +V     +G
Sbjct: 18  AKPMYLEQGTSKYIELDKKIDTIFVSSSEVADYEIVDDYSFMVYGKQEGTTDVTAFDANG 77

Query: 107 KQMLNLDILIERDIAHL---EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             +    + +   I ++      ++    +SN++V+ +    V+ G   T  +S+    +
Sbjct: 78  NILYTDTLNVNALINNIVDTNKQIKARFPNSNLQVKKLGKAYVIEGKANTQHESEEVNRI 137

Query: 164 SETFLSQSGRNQYANSSSKK-----------------VMNLLNIAGEDQVTLKVTIAEVR 206
               +  + +                           V+N  NI    Q+ +K+T+AEV 
Sbjct: 138 VGEAIGVAPKVTETTLKRGNGMSDEKIPFLDKYEYNGVINNTNIDKTKQINVKLTVAEVN 197

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADF-GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           ++    +G +      S   + +  A+   G F    G  ++   ++       + A+  
Sbjct: 198 KNFSDSLGIKWEHLSGSVLENWTSGANGYSGGFDGTTGSIAL---INANRLSAFITAVNN 254

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
           A   + LAEP ++ +SG++A    GG+  +     S G TS+   D+GV L     V   
Sbjct: 255 ANNGKILAEPNISMLSGETADILVGGEVPFAQ-RDSDGNTSIIYKDFGVKLMVGAKVQKN 313

Query: 326 GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            ++ + +  EVS         + GD+P ++ R+A +T E+ +G + ++ GLL     +  
Sbjct: 314 DQVRIVLAQEVSTLAGNYTYTSVGDIPYFQTRRAKSTFEVGNGESFIIGGLLSSSDLEGV 373

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +PL   IPILGA FR+   +RE  E+ + AT  LV P     +  P   +      + 
Sbjct: 374 SKVPLFGDIPILGAFFRSVTTSRETKELVVVATVNLVTPNDAEKVIYP--SFEQTGTLER 431

Query: 443 FFF 445
           FF 
Sbjct: 432 FFN 434


>gi|37676253|ref|NP_936649.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|326424174|ref|NP_762071.2| type II/IV secretion system secretin RcpA/CpaC [Vibrio vulnificus
           CMCP6]
 gi|37200794|dbj|BAC96619.1| rough colony protein RcpA [Vibrio vulnificus YJ016]
 gi|319999557|gb|AAO07061.2| Type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Vibrio vulnificus CMCP6]
          Length = 441

 Score =  253 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 108/453 (23%), Positives = 189/453 (41%), Gaps = 43/453 (9%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
             I +  + +   + +++       + +   +  V V  P  AD  +     + ++G  +
Sbjct: 11  TTIGVVSLSVNSNELMNLNQGSAKTISLKRQISTVFVGAPEIADYKIIDETKVVVYGVGL 70

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G  +VI+    G ++ N ++++ + +  ++ TL     D +I +  V + VVL G+V + 
Sbjct: 71  GATSVIVYDRAGNELYNAEVVVNKSLRLVKQTLIARFPDESINITNVGEQVVLDGVVSSE 130

Query: 155 QDSQRAVELSETFLSQSGR-----------------NQYANSSSKKVMNLLNIAGEDQVT 197
           +   +        L +S                   +  A      ++N L +   +Q+ 
Sbjct: 131 EVKTQIYRTVGEMLKKSVTRNTLTLQDTSGGQVDSLDYTATYIYDNIINNLKVLTTEQIN 190

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           +K+T+AEV    L ++G  +S +G                    G   +           
Sbjct: 191 VKLTVAEVSSSFLSELGVSYSDSGQ------------------AGRFVNKLLDFTAQDIV 232

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            V+ A       R LAEP L+ ISG++ASF  GG+        S    SV+  +YGV L 
Sbjct: 233 AVITASGDDQIGRVLAEPNLSVISGETASFLVGGELPIAIRDESG--ISVSYKEYGVKLS 290

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
               V     I L +  EVS             ++P+ R RKA TTV+L  G + VLAGL
Sbjct: 291 MVAKVTDSENIRLSLLPEVSSIDEENKTANGLINVPALRTRKAQTTVQLKDGQSFVLAGL 350

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L  + ++    IP+L  IPILGALF +++ N+ +TE+ I AT  LV PV   D+  P   
Sbjct: 351 LTSEERESLSKIPVLGDIPILGALFSHTKSNQTKTELIIVATVNLVDPVKAEDIKLP--S 408

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           +    D +      ++ +  P+    +    + 
Sbjct: 409 FRRTSDIERLLRIDLSSMNEPELEDTLNKGGFN 441


>gi|152981036|ref|YP_001355006.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
 gi|151281113|gb|ABR89523.1| pilus assembly protein CpaC [Janthinobacterium sp. Marseille]
          Length = 429

 Score =  252 bits (644), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 100/424 (23%), Positives = 182/424 (42%), Gaps = 36/424 (8%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKN 93
            S   + +   +++ + + + L+ P D++ + V+DP  AD+++       P ++ L GK 
Sbjct: 14  TSFPALAEEMNLTVRVREQLQLKTPADLERIAVADPEVADILIIKGSNKRPGSIMLVGKK 73

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  +V     +G       +        ++  L+  + +    +++ SD+  L G   +
Sbjct: 74  PGSTSVTAWQRNG-PTKVWQV-------SVQSALQGLLPEEGAELQINSDSASLRGQSPS 125

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +      V      + +           +K ++   +A    V + V I E  R++LK+ 
Sbjct: 126 LLSHANTVAAGTQAVGK-----------EKFLDTSTVATSGMVQIDVQIVEFSRNVLKEA 174

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRT 271
           GF      +          +F     S           +L   S    +  +E+    R 
Sbjct: 175 GFDFIFNQNRGATFSFGLNNFSTILSSTVQTPVSQAFNLLGSTSVNARVKLIEQNGLARV 234

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A+SGQSASF +GG+          G T++    +G+ L  TPTVLS  RI L+
Sbjct: 235 LARPSLIALSGQSASFLAGGELPVPQS-GGLGTTTIIYKAFGIGLTVTPTVLSANRIALK 293

Query: 332 IQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  E S+             +P+   R+ +TT+EL  G + V+ GL+    +     +P 
Sbjct: 294 VAPEASDLDYANAIVTNNMMIPAISTRRTETTLELGDGESFVIGGLVSRTTKSNVNKVPF 353

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDD----HYSVEDDAKA 442
           L  +PILG  FR+ +++++E E+ I ATP LVKP+A    L  P D      +  +   +
Sbjct: 354 LGDLPILGPFFRSMQYSQDEKELVIIATPHLVKPIAKGAQLPLPGDDKERRDTPANAWSS 413

Query: 443 FFFN 446
           +   
Sbjct: 414 YVMG 417


>gi|32477871|ref|NP_870865.1| type II secretion system protein [Rhodopirellula baltica SH 1]
 gi|32448428|emb|CAD77943.1| probable type II secretion system protein [Rhodopirellula baltica
           SH 1]
          Length = 704

 Score =  252 bits (644), Expect = 8e-65,   Method: Composition-based stats.
 Identities = 110/496 (22%), Positives = 186/496 (37%), Gaps = 62/496 (12%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
                +   PP   A        + EI     +S+ L +  IL++      + V D    
Sbjct: 110 GLPAELILPPPSDAAKQRASRFVESEIDPEIPLSLVLGRPKILRLADTPTRIYVPDEDTI 169

Query: 78  DVVVH---SPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIER------DIAHL 123
              +    S R + + G   G   ++L   D     G+ +++  + +         +  L
Sbjct: 170 RTEIIDQESGRELAVTGVQPGTTTLMLWFKDSGAPSGQSVVSYLVRVYEDPILAKPVGDL 229

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL-------------------- 163
           E  L     +S + ++ ++D +++ G      +  + +++                    
Sbjct: 230 ETELNEKFPNSFVELDEIADRLIVRGQAPDAIEMSQILQILTGARGVRAGLTRPANPVTV 289

Query: 164 --SETFLSQSGRNQYANSSSKK-------------VMNLLNIAGEDQVTLKVTIAEVRRD 208
             +  F+          +++++             ++N + I GE QV LKVT+AEV R 
Sbjct: 290 AAAYDFVGAVDPLTSEEAAAERRRNLDPIALSQAGIINQMKIVGEQQVMLKVTVAEVNRS 349

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
             + IG    +   +                S+ G  ++   LD       + AL R   
Sbjct: 350 AARSIGLNFGVDNDNGLTVFQSLTGNLASTQSQSGA-NILASLDMGQVRLAIEALRRLNL 408

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSP 325
            RTLAEP L A++GQ A F +GGQ     +SS         V+   +GV L FTP +   
Sbjct: 409 SRTLAEPNLVAMNGQPADFQAGGQFPIPIISSGGVGNNLQGVSFVPFGVQLQFTPFIQDR 468

Query: 326 GRIGLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             I L++  EVS     +            +     R   TTV+L SG TI +AGLL+ +
Sbjct: 469 DVIRLQMNAEVSTRDESLGTSIGGGGGGTQVSGLNSRNFSTTVQLRSGQTIAVAGLLQTN 528

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSV 436
                +  P    +PI+GA    +R +  E E+ I  TP LV PV   +    P      
Sbjct: 529 YGASSDRTPFWGDLPIIGATGGVNRSSSGEQELVILVTPHLVAPVDACETPALPGSDVYE 588

Query: 437 EDDAKAFFFNRVNKIY 452
             D + F  NR+    
Sbjct: 589 PSDIEFFIANRLESRR 604


>gi|10956078|ref|NP_052165.1| exporter protein [Chlorobium limicola]
 gi|1688247|gb|AAB36938.1| exporter protein [Chlorobium limicola]
          Length = 461

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 93/461 (20%), Positives = 166/461 (36%), Gaps = 68/461 (14%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            + L +  I +    ++ V V DP  AD ++ +   +YL GK +G  N+++    G  + 
Sbjct: 8   RVPLGESRIYRFAQPIKRVAVGDPQVADYIMMNRSEIYLLGKKLGSTNLVVWDQKGN-VT 66

Query: 111 NLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           +  + + R    L+  L+      N I ++ +   +VL G V     ++  + L   +  
Sbjct: 67  STPVQVSRGTTALQAFLKALFPKENDIHIDALGPALVLSGSVSDALVAESVIRLVTAYFG 126

Query: 170 Q---------------------------------------------------SGRNQYAN 178
                                                                       
Sbjct: 127 GSVSKSSPESALIGTDAKALTGVIGELNKSTTASNAESFAFFKKTLMMGDEKGASGSAGR 186

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            S++ V+NLL +    QV L+V IA+V R  L+ +G   +                 GK 
Sbjct: 187 DSTRGVINLLKVRDPQQVRLEVRIAQVSRSYLESLGLSVTKL-------TGDLTGSLGKL 239

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     +   +L +  ++  + A  + + ++ LAEPT+  +SG+   F  GG+    + 
Sbjct: 240 STGFVSDATLDLLLKPDYDIKMGAKRKPSLLKILAEPTIVTMSGKEGYFLVGGKIYTPSR 299

Query: 299 SSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
             S   T   +        V    P+         R+           +   +     R 
Sbjct: 300 VESQLDTAKLNTKNTPTAWVYVLRPSCWMQAVFHSRLYPRFLNLTRNHSLLGLQKIGHRL 359

Query: 356 ----ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T VE+  G  +V+ GL  D++    + +PLL +IPILGALFRN+  N E+TE+ 
Sbjct: 360 NSAPVSTAVEMNEGENLVIGGLKLDNLTNAIDSVPLLGEIPILGALFRNTDKNAEKTELM 419

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
           +   P LVK         P D +      + FF  ++    
Sbjct: 420 VIVRPTLVKASNTPP-ELPTDKFVPPTRGELFFGGKLEGSR 459


>gi|319940440|ref|ZP_08014785.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
 gi|319806066|gb|EFW02815.1| type II and III secretion system protein [Sutterella wadsworthensis
           3_1_45B]
          Length = 530

 Score =  251 bits (641), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 121/498 (24%), Positives = 205/498 (41%), Gaps = 65/498 (13%)

Query: 2   RYLQRTFFTMMSI-FLFSSN--PSVAKLPPIKEANAAVINISDVE-----IGKGKKISIG 53
           R   RT F    +  L      P+ A L      +  V+  +              + + 
Sbjct: 20  RKPSRTVFAAACLGALLGLAVSPASAALKAQVPTDVKVLEGASSLKNLKLAKPTSSLRVF 79

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           L +  +LQ+P     VLV+ P  A   + SP  ++ FG   G      +   G  +  + 
Sbjct: 80  LKEGALLQLPSAAAKVLVATPGIASYQMPSPDQVFFFGTAAGSTTFYALDEAGAVIAAVQ 139

Query: 114 ILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           + +E ++  L+  ++R +  ++I  V  +++ +++ G V+T  DS+R  +L E++L  S 
Sbjct: 140 VTVEHNLEKLKADIKRAVPSASIELVPALNNRMIVRGKVKTALDSRRVTQLVESYLVSSA 199

Query: 173 RNQYANSSSK------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
                   S+                   V+N L +    QV ++V + EV R +   +G
Sbjct: 200 AAGGPGQGSQQGGQDGGGQGGSAGGQSSPVINQLKVEVSQQVNIQVRVVEVSRSLTHSLG 259

Query: 215 FQHSI-------------------------------TGSSSGPSKSFAADFGGKFVSEGG 243
           F                                      S     +          + G 
Sbjct: 260 FNWGAVLNTGRGPLFLGNGTSQGLFSTHAANNSHFNPNDSFADGNANIPGLMPDSNTAGA 319

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                  + R S   +++A+  +     LAEP LTA+SGQ A+F SGG+     +  +  
Sbjct: 320 ALGGIFNMGRMSLGVLINAMSESGFASLLAEPNLTAMSGQPAAFASGGEVPIVII--TGN 377

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADT 358
           + ++    +GV+L  TPTVLSP RI + +  EVSE              +P+ RVR+A+T
Sbjct: 378 SITIDYKSWGVILRMTPTVLSPNRIAIHVAPEVSELTSEGQVILSEGSVIPAVRVRRAET 437

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL SG +  LAG+L+ +  Q   G+P L  +P +G LF   +   E++E+ I  T  +
Sbjct: 438 TVELASGQSFALAGMLRSESSQTVNGVPGLRNLPFVGRLFEYEQTQVEDSELVILLTANI 497

Query: 419 VKPVAMRDLSRPDDHYSV 436
           V PV+  DL  P    + 
Sbjct: 498 VDPVSSGDLRVPGRGINA 515


>gi|260914312|ref|ZP_05920781.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
 gi|260631413|gb|EEX49595.1| type II/IV secretion system secretin RcpA/CpaC [Pasteurella
           dagmatis ATCC 43325]
          Length = 465

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 87/429 (20%), Positives = 171/429 (39%), Gaps = 29/429 (6%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
            I +    +   K  ++      ++Q    +  + VS P  AD  +    +  ++ K  G
Sbjct: 19  AILVLSPGVMFAKTFNLEQGGTQLIQTKEKIDTIFVSSPAIADYEILDDNSFIIYAKEQG 78

Query: 96  QANVILIGHDGKQMLNLDILIE---RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
           +A +     +GK + N  + ++     I+     ++    ++N+ V+ V    V+ G  R
Sbjct: 79  RAEISAFDANGKTLTNDVVNVDSLFTGISDTNQQIKARFPNTNLSVKKVGKAYVIEGKAR 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVT 197
           + ++S     +    L    +       +                 V+N +N+    Q+ 
Sbjct: 139 SQEESDEVHRIVGEALGNGKKVTETKFKAGESEESLPFLDKYQFDGVVNNVNVDETTQIN 198

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           +K+T+ EV + + + +G   S                G   V+          +D     
Sbjct: 199 VKLTVVEVNKKLSEAVGINWS-----RLSGGVPDLLGGVSRVTGFDGIQGLLKIDASGVS 253

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             ++AL+     R LAEP ++ +SG++A    GG+  +         T +   D+G+ L 
Sbjct: 254 AFINALDNQNNGRILAEPNISMLSGETADILVGGEIPFAQRDKEGAPTII-YKDFGIRLA 312

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
               +    RI L +   VS         + G++P +  R++ +  E+  G + ++ GL 
Sbjct: 313 VAAKLQKNNRIRLALDQRVSTIAGNYSFESVGEIPFFNTRRSKSVFEVADGESFIIGGLF 372

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
                +    +P+L  IPILGA FRN++ +RE+ E+ I AT   VKPV   ++  P   +
Sbjct: 373 NSSDLEGINKVPVLGDIPILGAFFRNAKTDREDRELVIVATVNTVKPVQEDEIVYPT--F 430

Query: 435 SVEDDAKAF 443
                 + F
Sbjct: 431 ERTGTMERF 439


>gi|59711120|ref|YP_203896.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59479221|gb|AAW85008.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 436

 Score =  251 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 108/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +++I  + +   +  ++       +    ++  V +S+P  AD  +     + LFG+ VG
Sbjct: 12  LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
            +  I     G+++LN  I++ ++ + +E  ++     S+I +  +    V+ G V   +
Sbjct: 72  DSVFIAFDVQGRELLNKKIIVSKNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131

Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
           D  +  E+  T L     +  A               + V+N + +A   QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    ++  G +    G                    G               +V+ A+ 
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L  T  V  
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291

Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             +I L +   VS        +  ++PS + R A TTVEL  G + VL GLL  + ++  
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             IP +  IPILGALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400


>gi|261867455|ref|YP_003255377.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
 gi|261412787|gb|ACX82158.1| RcpA [Aggregatibacter actinomycetemcomitans D11S-1]
          Length = 420

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 91/404 (22%), Positives = 174/404 (43%), Gaps = 25/404 (6%)

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++Q    +  + VS P  AD  +    T  ++ K  G+  V   G DG+ + +  + ++ 
Sbjct: 1   MVQTKEKIDTIFVSSPNIADYEILDDNTFIIYAKEEGRTEVTAFGADGRPLTSDTVNVDS 60

Query: 119 DIAHLE---MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
            +  +      L+    ++N+ V+ V    V+ G  R+ ++S     +    L    +  
Sbjct: 61  VVTSIADTNKQLKSRFPNTNLSVKKVGKAYVIEGKARSQEESDEVRRIVGEALGSGRKVT 120

Query: 176 YANSSSK-----------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                              V++  NIA   Q+ +K+++ EV + + + +G   S    S 
Sbjct: 121 ETKLGEDSLPFLDKYHYDGVVDNANIADTTQINVKLSVVEVNKKLSEAMGINWSHVAGSG 180

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                     GG   ++G        LD       ++AL+  +  + LAEP ++ +SG++
Sbjct: 181 PLVGGNFGFGGGFNGNQG-----VLRLDAKGISAFINALDNQSNGKVLAEPNISMLSGET 235

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A    GG+  +       G+ ++   ++G+ L     +    RI L +   VS      N
Sbjct: 236 ADILVGGEIPFAQ-RDRDGSPTIIYKEFGIKLAVAAKLQKNNRIRLALDQTVSTIAGNYN 294

Query: 345 ---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               G++P +  RKA +  E+ +G + ++ GL   +  +    +PLL  IPILG+ FR++
Sbjct: 295 FDGIGNIPFFNTRKAKSLFEVANGESFIIGGLFSSNDLEGINKVPLLGDIPILGSFFRSA 354

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
              R++ E+ I AT  +VKPV  +D+  PD  +      + FF 
Sbjct: 355 TTERDKKELVIVATVNVVKPVNEKDVVYPD--FEKTGTMERFFH 396


>gi|197335194|ref|YP_002155269.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197316684|gb|ACH66131.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 436

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 109/409 (26%), Positives = 181/409 (44%), Gaps = 33/409 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           +++I  + +   +  ++       +    ++  V +S+P  AD  +     + LFG+ VG
Sbjct: 12  LLSIVSLNVRAKEIENLSAGDAKSITTTTEIGSVFISNPKVADYKIIDKYKVVLFGREVG 71

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
            +  I     G+++LN  I++ R+ + +E  ++     S+I +  +    V+ G V   +
Sbjct: 72  DSVFIAFDVQGRELLNKKIIVSRNYSGIEQQVKLRFPTSDIDIFAIGTNAVVSGTVLNEE 131

Query: 156 DSQRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIAE 204
           D  +  E+  T L     +  A               + V+N + +A   QV +K+TIAE
Sbjct: 132 DRDQIYEMVATLLFDDNADNNAQDDRTELTYMDKLNFEGVVNQIEVARTKQVNVKLTIAE 191

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    ++  G +    G                    G               +V+ A+ 
Sbjct: 192 VSHSFMQDFGIKVGSNGQ------------------AGIFVDQLVHFSASDIVSVITAVG 233

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             +  + LAEP L+ ISG+ ASF  GG+    TV    GAT+V   ++GV L  T  V  
Sbjct: 234 TDSVGQVLAEPNLSVISGEDASFLVGGELPVVTVI--DGATNVQYKEFGVKLDLTAKVER 291

Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             +I L +   VS        +  ++PS + R A TTVEL  G + VL GLL  + ++  
Sbjct: 292 DDKIKLALAPSVSSLDTQYANDNYNLPSLKTRSARTTVELGDGQSFVLGGLLNSEEKESL 351

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
             IP +  IPILGALFR++   R +TE+ I AT  LV+PV    +  P 
Sbjct: 352 TRIPFVGDIPILGALFRHTGTERNKTELIIVATVNLVQPVKANQIQLPT 400


>gi|221067360|ref|ZP_03543465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220712383|gb|EED67751.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 520

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 126/492 (25%), Positives = 209/492 (42%), Gaps = 64/492 (13%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--------------SIGLNKVII 59
           + L SS P +A+              +         +              ++ L K ++
Sbjct: 1   MLLASSAPVLAQSAGTAAQPGPAAAAAPAPAAPRTTLPARNCTAIHTEDPTTVTLGKSVV 60

Query: 60  LQVPVDVQDVLV-------------SDPTK--------ADVVVHSPRTMYLFGKNVGQAN 98
           + +   +  +LV               P           +V + SPR ++  G+  G  N
Sbjct: 61  IPLNSPMARILVSGQTPGAGQAAANGQPQMQVQNGMGDIEVQLLSPRDLFFRGRKSGSMN 120

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157
           VIL    G      D+++  D   L+  L   + +   IRV+   + +VL G +      
Sbjct: 121 VILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSIRVQGADNALVLSGEISNPLRL 179

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
              V L+  +           S SKK++NLL      QV L+V IAE+ + +L ++G   
Sbjct: 180 DDVVTLAGAY-----------SDSKKIVNLLRTTSPHQVMLEVKIAEISKTLLDKLGSSL 228

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           S  G     +   +      F+S GG       L R S    +   +    +R LAEP +
Sbjct: 229 S--GQRVTSNGQNSYTVLSNFLSGGGGLLNAMRLGRGSIS--IDGQKDDGLVRILAEPNI 284

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            AISGQ ASF SGG+       ++T    V      ++G+ + FTPTVL   R+ L++ +
Sbjct: 285 MAISGQQASFLSGGKIFIPVAQTNTNGVPVMTLEEKEFGIGVKFTPTVLGNSRVNLKLVS 344

Query: 335 EVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           EVS+     +           +PS  VR+ADTTV+L  G ++V+AGL+K++I +  +  P
Sbjct: 345 EVSDLSQTGSPFTSINGVTSVIPSLTVRRADTTVQLNDGQSLVIAGLIKNNITEAIKRFP 404

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L +IP+LGAL R++ F  ++TE+    TP LV+ +A      P D++ V   A+ +   
Sbjct: 405 GLGEIPVLGALARSTEFQTDQTELMFVITPRLVQALA-EAPRVPTDNHVVPSRAEVYLNG 463

Query: 447 RVNKIYGPKEAS 458
            +          
Sbjct: 464 ALESSKPAPAEK 475


>gi|170724970|ref|YP_001758996.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810317|gb|ACA84901.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 446

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 100/417 (23%), Positives = 189/417 (45%), Gaps = 46/417 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    +++  ++  V +S P  AD  +     + ++G+ +GQA + +     + +L+
Sbjct: 29  VTLNDASSIELKQEIGTVFISQPEVADYKITGNNKLVIYGRQLGQARLFVYNKANEVILS 88

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             + ++ +++ +   L+ F  D ++ +  V D V + G+V + +          TFL + 
Sbjct: 89  QLLHVDINLSQIRRQLKLFYPDLDLTLTSVGDKVAVRGIVYSEEQRNDIYRQVATFLGRE 148

Query: 172 GRNQYANSSS---------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
              ++  S                       + ++  L ++   QV +K+++A+V ++  
Sbjct: 149 KVERFDESELVEFKDSFTEANWLAYERNFIWQGIIEGLRLSQTQQVNVKISVAQVTKEFN 208

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           + +G   S  G S G                                T+++AL + +   
Sbjct: 209 ETLGVSWSTVGRSVGEFSFLD-------------------FKASDLSTIINALGKDSIAE 249

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP L+ +SG+SASF  GG+     + S+   T++T  ++G+ L  +  VL+  +I L
Sbjct: 250 VLAEPNLSVMSGESASFLVGGEIPV--IFSNNNTTNITYKEFGIRLDLSAKVLNNEKIKL 307

Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++  EVS  E  +      +P    R+A TT+EL  G + +L GL+  D  +    IPLL
Sbjct: 308 QMMPEVSAVEGFVEAAGIKIPQLTTRRAMTTIELGDGDSFLLGGLMSSDELENVSKIPLL 367

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
             IP+ GALFR +   R++TE+ I AT  LVKP++  ++  P    +       FF 
Sbjct: 368 GDIPVFGALFRQAGTTRKKTELVIVATVNLVKPLSPTEVRLP--KMTPTKSLARFFN 422


>gi|255658704|ref|ZP_05404113.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
 gi|260849091|gb|EEX69098.1| putative type II/III secretion system protein [Mitsuokella
           multacida DSM 20544]
          Length = 548

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 95/443 (21%), Positives = 177/443 (39%), Gaps = 57/443 (12%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                +   +SI LN+   L    ++  V +++P  ADV +    ++ + G + G   + 
Sbjct: 22  APAYAQFTPLSIDLNQSYYLNTGRNITRVAIANPKIADVSLLDGTSLNVIGISPGTTTLN 81

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   +G       I +    + L   ++  I   ++RV+M+   ++L G V+   +   A
Sbjct: 82  VWASNG-YRYEYRITVSDQDSGLAKIVQDAIGLPDVRVQMIGGKILLRGTVKNQYERNLA 140

Query: 161 VELSETFLSQSGRNQ---------------------------------------YANSSS 181
             +++ +   S  +                                         + S+ 
Sbjct: 141 YTIAKLYAKGSNSSPSQDQGQYVSTTESKSSMTPDGRYENKTVTNDSYQRTPRDTSGSTG 200

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             V+NLL +   DQ+ ++    E+     K +G  ++    S   S     +  G + + 
Sbjct: 201 DSVVNLLEMTNPDQINIEAMFVELGTSDAKNLGINYASQDMSDTDSSGIKMNDVGTYYAG 260

Query: 242 GGDFSVKGVLD-----------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                 +   +                  +HAL      R ++ P +T +SG++AS   G
Sbjct: 261 ESYGRQRSGGNHWYNSNWLFTHFSKINAEIHALIENGKARVISRPNVTTMSGKNASILIG 320

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVS----EPVIGVNA 345
           G+  Y+   +  G+T+ +   YG+ +    PTV   G I   ++T+VS       +  + 
Sbjct: 321 GEVPYQES-NGFGSTTTSYKTYGIGIQLWKPTVDQDGNITTELETQVSRLDWNNAVTKDG 379

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             MP    R A TTV +PSG T+V+ GLL  +     + +PLL  IPILG LF+    +R
Sbjct: 380 YRMPGIATRSAYTTVNIPSGMTMVIGGLLNSNDANTIQKVPLLGNIPILGELFKYHNKSR 439

Query: 406 EETEIFIAATPFLVKPVAMRDLS 428
           ++TEI +  TP +V       +S
Sbjct: 440 QKTEIVVLITPRVVSEETPARMS 462


>gi|165975974|ref|YP_001651567.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165876075|gb|ABY69123.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 462

 Score =  250 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 93/422 (22%), Positives = 171/422 (40%), Gaps = 27/422 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI   
Sbjct: 24  SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S   
Sbjct: 84  ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143

Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
             +    L    +                       + V+N  N     Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +    +IG   S    +   +    A   G F   GG  ++   ++  +   ++ AL+ 
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLG-NAGIQGNFNKNGGQLAL---VNSNNLNVLISALDN 259

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V   
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318

Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436

Query: 444 FF 445
           F 
Sbjct: 437 FN 438


>gi|54309660|ref|YP_130680.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46914098|emb|CAG20878.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 461

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 112/403 (27%), Positives = 181/403 (44%), Gaps = 45/403 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I LN    L+ P ++  V VS P   D  V   R + +F   +GQA VI+ G + + +L+
Sbjct: 34  ITLNDANNLEFPQEIGTVFVSQPDILDYKVIDNRKLVIFSNKIGQAKVIVYGKENQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D NI V  V + V + G V   +       +  T L + 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLNISVSSVGEQVAVRGTVNNEKQRDDIYRMVATLLGKK 153

Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y  +                        + ++  L IA   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYIWEGIVEGLVIAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G                                TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEFSFL-------------------KFKANDLSTVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+        +  +T+++  ++G+ L  +  VLS   I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKSIK 312

Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L++  EVS  E  +     ++P    R+A TT++L  G + +L GL+  D  +    IPL
Sbjct: 313 LQLAPEVSAVEGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           L  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|46143341|ref|ZP_00204447.1| COG4964: Flp pilus assembly protein, secretin CpaC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|126208037|ref|YP_001053262.1| rough colony protein A [Actinobacillus pleuropneumoniae L20]
 gi|126096829|gb|ABN73657.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 5b
           str. L20]
          Length = 462

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI   
Sbjct: 24  SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S   
Sbjct: 84  ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143

Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
             +    L    +                       + V+N  N     Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +    +IG   S    +   +   AA  G    + G       +++  +   ++ AL+ 
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V   
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318

Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436

Query: 444 FF 445
           F 
Sbjct: 437 FN 438


>gi|307245412|ref|ZP_07527500.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307254367|ref|ZP_07536205.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258825|ref|ZP_07540557.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307261005|ref|ZP_07542687.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306853753|gb|EFM85970.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306862666|gb|EFM94622.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867176|gb|EFM99032.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869307|gb|EFN01102.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 462

 Score =  249 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI   
Sbjct: 24  SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S   
Sbjct: 84  ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143

Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
             +    L    +                       + V+N  N     Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNDGEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +    +IG   S    +   +   AA  G    + G       +++  +   ++ AL+ 
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V   
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318

Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436

Query: 444 FF 445
           F 
Sbjct: 437 FN 438


>gi|190149865|ref|YP_001968390.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|307249759|ref|ZP_07531737.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307256574|ref|ZP_07538355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|307263189|ref|ZP_07544810.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914996|gb|ACE61248.1| rough colony protein A [Actinobacillus pleuropneumoniae serovar 7
           str. AP76]
 gi|306858174|gb|EFM90252.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306864984|gb|EFM96886.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306871551|gb|EFN03274.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 462

 Score =  249 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 170/422 (40%), Gaps = 27/422 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
               K  ++   +  +++    +  + VS    AD  +    +  L+ K  G++ VI   
Sbjct: 24  SAMAKTFTLEQGQSQLIKTNAKIDTIFVSSSEVADYEILDDNSFMLYAKAEGRSEVIAFD 83

Query: 104 HDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
            +G  +            +IA     ++    +SN+ V+ V    VL G  +   +S   
Sbjct: 84  ANGTPLTEDFVNVNNAINNIAATNQQIQTRFPNSNLTVKKVGKAYVLEGKAKNAAESDEI 143

Query: 161 VELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQVTLKVTIAEV 205
             +    L    +                       + V+N  N     Q+ +K+T+AEV
Sbjct: 144 NRIVGESLGAGKKVIETKLKHNNSEENVPFLDKYQYEGVINNANEENATQINVKLTVAEV 203

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +    +IG   S    +   +   AA  G    + G       +++  +   ++ AL+ 
Sbjct: 204 NKTFSDEIGINWSNLSGNFFRNLGNAAIQGNFNKNGGQ----LALVNSNNLNVLISALDN 259

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V   
Sbjct: 260 QNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKS 318

Query: 326 GRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            RI L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  +
Sbjct: 319 DRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIK 378

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + F
Sbjct: 379 KVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERF 436

Query: 444 FF 445
           F 
Sbjct: 437 FN 438


>gi|90412176|ref|ZP_01220182.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
 gi|90326900|gb|EAS43285.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           3TCK]
          Length = 461

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 109/403 (27%), Positives = 182/403 (45%), Gaps = 45/403 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + LN    L+   ++  V VS P   D  V   R + +F   +GQA VI+ G D + +L+
Sbjct: 34  VTLNDANNLEFSQEIGTVFVSQPDILDYKVIDSRKLVIFSNKIGQAKVIVYGKDNQVLLS 93

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
               ++ +++ +   L+ +  D +I V  V + V + G V   +       +  T LS+ 
Sbjct: 94  QRYHVDINLSQVRRQLKLYYPDLSISVTSVGEQVAIRGTVNNEKQRDDIYRMVATLLSKK 153

Query: 172 GRNQYANSSS----------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +Y  +                        + ++  L +A   QV +K+++A+V ++ 
Sbjct: 154 EIERYNEAEKLKFVESGFEEANWVRYSKNYTWEGIIEGLVVAQAQQVNVKISVAQVTKEF 213

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            + IG   S  G S G                                TV++A+      
Sbjct: 214 NETIGVDWSTVGRSVGEFSFLE-------------------FKANDLSTVINAIGNDNIA 254

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LAEP LT +SG+SASF  GG+        +  +T+++  ++G+ L  +  VLS  +I 
Sbjct: 255 EILAEPNLTVLSGESASFLVGGEVPVIVT--NDNSTNISFKEFGIKLELSAKVLSNKKIK 312

Query: 330 LRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           L++  EVS  +  +     ++P    R+A TT++L  G + +L GL+  D  +    IPL
Sbjct: 313 LQLAPEVSAVDGYVKAAGIEVPQLSSRRAMTTIQLADGDSFMLGGLMSSDDIEEISKIPL 372

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           L  IPILGA FR S   R++TE+ I AT  LVKPV+  D+  P
Sbjct: 373 LGDIPILGAAFRKSSTTRKKTELVIVATVNLVKPVSPTDVRLP 415


>gi|134295595|ref|YP_001119330.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
 gi|134138752|gb|ABO54495.1| type II and III secretion system protein [Burkholderia
           vietnamiensis G4]
          Length = 443

 Score =  248 bits (633), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 109/462 (23%), Positives = 175/462 (37%), Gaps = 45/462 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
                A A               I + +     +     +Q V V DP  ADV++     
Sbjct: 4   TLTAFAMALWALTFASMASASGTIELAVGAQRQIAAGRALQRVAVGDPAIADVLIMKGSR 63

Query: 87  ---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
              + L  K  G  NV++      +    ++ +      ++   +  +  S  +V+    
Sbjct: 64  AGSVLLTAKAPGTTNVMVWERGHDEPTVWNVEV------VDAAAQAVLDASTPQVKAYGG 117

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T VL G   ++   +RAV +++    +      +  + K V+ +                
Sbjct: 118 TSVLRGTAGSLDAHERAVAVAKNMSPKGAVIDRSTLAGKNVVQVDVRVV----------- 166

Query: 204 EVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           E  R +LKQ+GF                  +   + G     AA            F++ 
Sbjct: 167 EFSRSVLKQVGFNFFKQSNGFSFGSFSPGGVQSYNGGSGPGTAAYIPTLGAPVASAFNLV 226

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                      L  LE     R LAEPTL A+SGQSASF +GG+          G+T++ 
Sbjct: 227 VNAAGHGIFADLSLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQ 285

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPS 364
              YGV L  TPTVLSP RI L++  E S+      + ++   +P    R+ADTTVEL  
Sbjct: 286 WKQYGVGLSLTPTVLSPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGD 345

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G + V+ GL+          +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A 
Sbjct: 346 GESFVIGGLIDRQTMSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAK 405

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +           +        V + Y    AS      + 
Sbjct: 406 GAVLPAT-----PGELAEQHDGPVWRSYLGGAASPDAAPGFS 442


>gi|319941902|ref|ZP_08016223.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
 gi|319804555|gb|EFW01425.1| hypothetical protein HMPREF9464_01442 [Sutterella wadsworthensis
           3_1_45B]
          Length = 485

 Score =  248 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 119/450 (26%), Positives = 211/450 (46%), Gaps = 36/450 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +S+ L +   L     +  V V+ P+ A   V   R + +FG   G+ +++++G DG+ +
Sbjct: 1   MSVSLYQGKALSFNEQIGAVFVAQPSIASYQVVGNRKVVVFGSYPGKTSLMVLGTDGRTL 60

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS------------ 157
            N  + +  D++ +EM L+       +++  ++D V + G V T Q++            
Sbjct: 61  YNGLVEVAYDVSSMEMALKSSFPKLKLQLVALNDGVAVRGKVETAQEAANVVAFLDAMLQ 120

Query: 158 ---QRAVELSETFLSQSGRNQYANSSS-----------KKVMNLLNIAGEDQVTLKVTIA 203
              Q+A   +    +     Q   S +            K++N L +   +QVT++V  A
Sbjct: 121 VNPQQAQMAAADVSAAGQEGQQEKSGAATGTGTLGARIGKIINQLTVTTPNQVTVRVRFA 180

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----VKGVLDRFSFETV 259
           EV R +  Q+GF+   + S S    +F +       +             +  RF+F ++
Sbjct: 181 EVNRKLSDQLGFKWKGSYSGSRGGITFGSADNPIISNPNNSLGHLFDPATMAARFTFGSL 240

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
             A+     +  LAEP LT +SG++ASF +GGQ  +++     G   +   DYGV+L  T
Sbjct: 241 FDAMASEELVSILAEPNLTVVSGETASFLAGGQIPFQSS-DGDGGFDIEFKDYGVLLSIT 299

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           PT+LS  RI LR++ EVSE              P + VR+A++T+EL SG +  +AGLLK
Sbjct: 300 PTILSGNRISLRLRPEVSERSDSNGIQFMGSTQPGFIVRRAESTIELASGQSFAIAGLLK 359

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
           +D       IP ++ +PI+GAL R+  F R ETE+ I AT ++  P +    + P++   
Sbjct: 360 NDFSNTVNKIPGIADLPIIGALARSKAFERGETELVIVATAYISTP-SGEPYTIPNEEMY 418

Query: 436 VEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           V    + +F +   ++            ++
Sbjct: 419 VPTIFERYFMDADPQVSSGTALKTARKPSF 448


>gi|264678238|ref|YP_003278145.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262208751|gb|ACY32849.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 523

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 121/444 (27%), Positives = 199/444 (44%), Gaps = 54/444 (12%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLV------------------------SDPTKA 77
             I      ++ L K +++ +   +  +LV                              
Sbjct: 42  TAIRTEDPTTVTLGKSVVIPLSSPMARILVSGQTPGAGQAAAPMAANAQPQMQNGMGDI- 100

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-I 136
           +V + SPR ++  G+  G  NVIL    G      D+++  D   L+  L   + +   I
Sbjct: 101 EVQLLSPRDLFFRGRKSGSMNVILQNAQGAC-FIKDVIVTMDPGPLQAKLSELMPEERSI 159

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           RV+   + +VL G +         V L+  +           S SKK++NLL      QV
Sbjct: 160 RVQGADNALVLSGEISNPLRLDDVVTLAGAY-----------SDSKKIVNLLRTTSPHQV 208

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L+V IAEV + +L ++G   S+ G     +          F+S GG       + + S 
Sbjct: 209 MLEVKIAEVSKTLLDKLGA--SLAGQRITSNGMNTFSIASNFLSGGGGLLSAMRIGKGSI 266

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYG 313
              +   +    +R LAEP + AISGQ ASF SGG+       S+T    V      ++G
Sbjct: 267 S--IDGQKDDGLVRILAEPNIMAISGQQASFLSGGKIFIPVAQSNTTGVPVMTLEEKEFG 324

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSG 365
           + + FTPTVL   R+ L++ +EVS+     +           +PS  VR+ADTTV+L  G
Sbjct: 325 IGVKFTPTVLGGSRVNLKLVSEVSDLSQTGSPFTAINGVTSVIPSLSVRRADTTVQLNDG 384

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            ++V+AGL+K++I +  +  P L +IP+LGAL R++ F  ++TE+    TP LV+ +A  
Sbjct: 385 QSLVIAGLIKNNITEAVKRFPGLGEIPVLGALARSTEFQTDQTELMFIITPRLVQALA-E 443

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVN 449
               P D++ V   A+ +    + 
Sbjct: 444 APRVPTDNHVVPSRAEVYLNGALE 467


>gi|84385704|ref|ZP_00988735.1| rough colony protein RcpA [Vibrio splendidus 12B01]
 gi|84379684|gb|EAP96536.1| rough colony protein RcpA [Vibrio splendidus 12B01]
          Length = 447

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 171/406 (42%), Gaps = 36/406 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + +S+       + +  ++  V V++   AD  + +   + ++G   G  ++I     
Sbjct: 23  ASELLSLDQGGAKTINIKRNIDTVFVANSQIADYKIIANGKLVIYGIGRGATSIIAYDRA 82

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G ++ N ++++ + +  L+ TL     D NI++  + + VVL G+V + +       L  
Sbjct: 83  GNEIYNAEVVVNKSLRLLKQTLVARYPDENIKLTNIGEQVVLDGVVSSEEVKANVYRLVG 142

Query: 166 TFLSQ-----------------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             + +                    +  A    + ++N L +   +Q+ +K+T+AEV   
Sbjct: 143 EMMKKSKERHTFELSGANGESVDALDFTATYVFQDIINNLKVLTTEQINVKLTVAEVSSS 202

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++G  +             A   G      G   +            V+ A      
Sbjct: 203 FLTELGVSY-------------AESNGKSIGGAGTFVNKILDFTAQDIVAVISASGNDNI 249

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R LAEP L+ ISG+SASF  GG+             S+T  +YGV L     V     I
Sbjct: 250 GRVLAEPNLSVISGESASFLVGGEIPI--AVRDNDGVSITYKEYGVKLSMVAKVTDSENI 307

Query: 329 GLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L +  EVS              +PS R RKA TTV+L  G + VLAGLL  + Q+    
Sbjct: 308 RLSLLPEVSSIDKANGVNSGLISVPSLRTRKAQTTVQLKDGQSFVLAGLLTTEEQESLSR 367

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IPLL  IPILGALF  +   R +TE+ I AT  LV PV   ++  P
Sbjct: 368 IPLLGDIPILGALFSKTNTERRKTELIIVATVNLVDPVKEDEIKLP 413


>gi|167587316|ref|ZP_02379704.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 477

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 106/460 (23%), Positives = 176/460 (38%), Gaps = 54/460 (11%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHD 105
            I + +     +     +Q V V DP+ ADV++        + L  K  G  NV+L    
Sbjct: 29  SIDLAVGSQRQIAAGRALQRVAVGDPSVADVLIMKGSRAGAVLLVAKAPGSTNVMLWERG 88

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             + +  ++        ++      +  S    +   D  VL G   ++   +RA  + +
Sbjct: 89  RDEPMVWNV------NVVDAAAHAVLDSSTPDAKAYGDVAVLSGSAASLDAHERAAAIGQ 142

Query: 166 TFL-----------------------SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
                                       +            V++   + G + V + V +
Sbjct: 143 HMADKGGAAAGGNWGAGDAGATGKRGGGASGTLGKAGKGGAVIDASTVGGRNTVQVDVRV 202

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGV 250
            E  R +LK+ G       +        A                   +     F++   
Sbjct: 203 VEFSRSVLKEAGLNFFKQSNGFAFGAFTAGGLQSITGAATSAFQATAGIPVASAFNLVAN 262

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L  LE     R LA+PTL A+SGQSASF +GG+     V  + G+T++   
Sbjct: 263 SAGRGIFANLSILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIQWK 321

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366
            YGV L  TPTVLSP RI L++  E S+      + +N+  +P+   R+ADTTVEL  G 
Sbjct: 322 QYGVGLTLTPTVLSPRRIALKVAPESSQLDFLHGVTINSVAVPAITTRRADTTVELGDGE 381

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + V+ GL+  +       +P+L  +PI+GA F+   + + + E+ I  TP LV P+A   
Sbjct: 382 SFVIGGLIDRETMSNVNKVPVLGDLPIIGAFFKTLNYQQNDKELVIIVTPHLVAPIAKGA 441

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            S P    +   +        V + Y    AS      + 
Sbjct: 442 -SLP----ATPGELSEQRDGPVWRSYLGGIASPDAAPGFS 476


>gi|121607248|ref|YP_995055.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
 gi|121551888|gb|ABM56037.1| type II and III secretion system protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 714

 Score =  246 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 172/438 (39%), Gaps = 41/438 (9%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
             A+ P    +   +      +  +  +I + + +  +   P  V  + V +        
Sbjct: 60  LQARKPAPTPSQPYLPIRKQDDQAQVPEIEMFVGESRVFPSPG-VARIAVGNGKVLTAAA 118

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEM 140
              R + +F   VG +++ +   DG+       ++  D +     +  F++  +N +  +
Sbjct: 119 LDEREVIVFANEVGTSSLFVWNEDGRYQRVKINVVPGDTSRYAREIAAFLSTIANTKASI 178

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLK 199
           + D V++ G   +  D ++  +L + +               +++N    I  E  V + 
Sbjct: 179 IGDKVIVEGDNLSDIDLRKIEDLRKHY--------------PQIVNFTNQIGWEQMVLMD 224

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS------------------KSFAADFGGKFVSE 241
           V + E   + L+++G + +  G +S                             G  +  
Sbjct: 225 VKVVEFPVNELRELGLRWAAKGGASIGGIWSPIRRVHQDGLRIDVESPPITAADGDLIPL 284

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               ++   L+       L  L        LA+P L+A +G  A F +GG++ Y   S +
Sbjct: 285 PKGLNILSALN-MGLGAKLDLLASQGKASILAQPQLSARNGAKAEFLAGGEYPYVASSIN 343

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                V    YG+ L  TP V   G I   I +EVS     ++    P+  VR+  T   
Sbjct: 344 GPT--VMFKPYGIRLKITPRVDRNGVIRAEIDSEVSNIDPSISTAAGPALSVRRTFTEFN 401

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G T+VL+GL+     Q  + +P L  +P+LGALFR+ RF  +ETE+ +  TP ++  
Sbjct: 402 VQNGETMVLSGLMSRKTSQNIDKVPFLGDLPVLGALFRSKRFQNDETELVVFVTPTVINS 461

Query: 422 VAM---RDLSRPDDHYSV 436
            +    + + R  D    
Sbjct: 462 QSPGLVQRIERITDDLRQ 479


>gi|198284413|ref|YP_002220734.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666419|ref|YP_002427081.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248934|gb|ACH84527.1| type II and III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218518632|gb|ACK79218.1| bacterial type II/III secretion system protein [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 478

 Score =  246 bits (627), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 114/487 (23%), Positives = 189/487 (38%), Gaps = 43/487 (8%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
             ++    L +     A          A  + +  + G  + ++I +     L       
Sbjct: 6   MSSLAVATLAALGSQGAWAEGPAAEGGAHPSWAAHQSGGYRALNIPVGTQQTLSFTEPAY 65

Query: 68  DVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
            V V +P  A V        R   + G + G  ++++     K      + +   +    
Sbjct: 66  RVAVGNPKTASVAPLPRSGGRQFLITGLSTGTTSLLVWNLGHKTPKVWQLQVSVPVPGAP 125

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
           +            V    D V L G V                 +       A   + KV
Sbjct: 126 LAAPAPGMPE---VRAQGDAVTLSGAVADQVKH----------EAALEAAALAAGKTGKV 172

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFV 239
           ++   I  +D+V + V + E  +  LK +G          +  + GPS   +A++     
Sbjct: 173 IDQSVIPVDDEVQVGVKVVEFSKAQLKNVGINIFSSTGGFSLGTFGPSTLTSANYPVSLA 232

Query: 240 SEGGD-------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S G               F++ G +      + L  LE    +R LAEPTL A++GQ AS
Sbjct: 233 SGGPGALAITGVAPFTQAFNLVGGVGNSGLSSYLSLLEGNNILRVLAEPTLVAMNGQQAS 292

Query: 287 FTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
           F +GG+       SS   T   ++    YGV L  TPT+LS  RI L +   VS      
Sbjct: 293 FLAGGEIPIPVPQSSGVGTPTITIQYKKYGVQLDLTPTILSAHRIALHVAPSVSSLDYTN 352

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            I +N   +P+  VR+ADTTV L +G ++V+ GL+   +QQ    +P+L  +PILGA FR
Sbjct: 353 AITLNGYSVPALLVRQADTTVTLGNGESLVIGGLVDRQMQQNISKVPILGDLPILGAFFR 412

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
           + ++++++ E+ I  TP LV+P+A      P    +       F   +   + G      
Sbjct: 413 SIQYSKQDMELAIIVTPRLVRPIAAGAKLPPLPGAAFA--HSRFNLGKAVLLPGSDYNQP 470

Query: 460 VEGQNYK 466
             G  Y 
Sbjct: 471 DNGPGYS 477


>gi|84385684|ref|ZP_00988715.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
 gi|84379664|gb|EAP96516.1| hypothetical Flp pilus assembly protein [Vibrio splendidus 12B01]
          Length = 456

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 106/423 (25%), Positives = 189/423 (44%), Gaps = 47/423 (11%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A +I +  +        SI LN    +Q+   +  V +++P   D  + +  T+ +F   
Sbjct: 17  APLIGLLSITNAFAADRSITLNDGQHIQLKSPIGQVFINNPDIVDYKIINDNTIVVFANA 76

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           +GQ+ +I+ G DG  +L+  I+++ D+  +   L+    ++ ++++ V + V + G+V +
Sbjct: 77  IGQSRLIVYGIDGDVLLSDRIIVDLDLTDIRRQLKFHFPNAKVKIQSVGEQVAVSGLVDS 136

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS------------------------KKVMNLLN 189
                    L  T L +    ++  +                          + ++  + 
Sbjct: 137 EATRDDIYRLVATLLGREKTEKWDKTVKLEFKSDSSNYEEPESFVFARNMTWEGIIERIE 196

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +A   QV +K+++A+V     + +G   S  GSS G                     V  
Sbjct: 197 VATTQQVNVKISVAQVTESFGQTVGVDWSSVGSSVGEF-------------------VFD 237

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
             D  +  T++ AL        LAEP LT +SG+SASF  GG+      +S+    +++ 
Sbjct: 238 QFDAANLSTLITALGNDQIAEVLAEPNLTVLSGESASFLVGGEVPVIVTTSNN--VNISF 295

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPSGGT 367
            ++G+ L  T  VLS  RI +++  EVSE           +P    R+A TTVEL  G +
Sbjct: 296 KEFGIKLDLTAKVLSQDRIRMQLAPEVSEVEGYIETAGIKVPQLASRRAMTTVELADGDS 355

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            VL GL+     +  + IP +  IP+LGA FR +   R+ TE+ I AT  LV+P+  +D+
Sbjct: 356 FVLGGLMSSADLEKMQKIPFVGDIPVLGAAFRKATTERKRTELIIVATVNLVEPMKPKDI 415

Query: 428 SRP 430
             P
Sbjct: 416 QLP 418


>gi|238790280|ref|ZP_04634054.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
 gi|238721630|gb|EEQ13296.1| Flp pilus assembly protein, secretin CpaC [Yersinia frederiksenii
           ATCC 33641]
          Length = 463

 Score =  245 bits (624), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 107/440 (24%), Positives = 191/440 (43%), Gaps = 48/440 (10%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            A +     +     + I +   +   L+V   V  V +S+P  AD  V   + + +F +
Sbjct: 21  AAFIAMALMIGSAFSQDIYMEKGEARTLKVNAAVDTVFISNPDVADYEVIDEKQVVIFAR 80

Query: 93  NVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
             G+A++ + G D    ++ + I+++  + +++  +      S+I ++   +  VL G V
Sbjct: 81  ENGRASLEIYGGDNNATLMTMSIIVDPLLGNIKKEMAEEYPGSDIDIKKYGEGYVLTGTV 140

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKV------------------------MNL 187
                 +         L    +          V                        +N 
Sbjct: 141 PDEDAREGIYMTVGQALGLKRKETELKIKPGSVNSIGGDDSNDTPIDFMQKVVFEGLVNR 200

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L +   +QV +K+T+ EV +  +  +G   S                    +  G     
Sbjct: 201 LKLPTTNQVNVKLTVVEVTKTFMDNVGVDWS-----------------NAGLGAGQFNLT 243

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
           K   D  S  ++++A++  +  R LAEP L+ +SG++A F  GG+     V++S   +++
Sbjct: 244 KFRFDANSLNSLIYAIKNDSIARILAEPNLSVLSGETADFLVGGEIPI--VTTSMAGSTI 301

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSG 365
           T  ++GV L     V S  +I L +  E+S       +   ++P  R RKA TTVEL  G
Sbjct: 302 TYKEFGVKLVIAAKVESNNKIKLNLSEEISSLDGQYALGDLNIPKLRSRKARTTVELGDG 361

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + VL GLL ++ ++   GIP +S IPILGALFR +   RE TE+ + AT  LVKP++  
Sbjct: 362 DSFVLGGLLNENEKESLSGIPFISDIPILGALFRRTGAERERTELVVVATVNLVKPISFN 421

Query: 426 DLSRPDDHYSVEDDAKAFFF 445
            +  P  ++   + A+ FF 
Sbjct: 422 KVVLP--NFVRSNLAERFFN 439


>gi|148975962|ref|ZP_01812751.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
 gi|145964707|gb|EDK29960.1| hypothetical Flp pilus assembly protein [Vibrionales bacterium
           SWAT-3]
          Length = 456

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 109/456 (23%), Positives = 193/456 (42%), Gaps = 64/456 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR   R    +    L +    ++                          SI LN    +
Sbjct: 1   MRITHRVKRALFGSILVTLVGLLSTTNTFAADR-----------------SITLNDGQHI 43

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           Q    +  V +++P+  D  + +  T+ +F  +VGQ+ +I+ G D   +L+  I+++ ++
Sbjct: 44  QFKSPIGQVFINNPSIVDYKIINDNTLVVFANSVGQSRLIVYGVDDDVLLSDRIIVDLNL 103

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   L+    D+ ++V+ V + V + G+V +         L  T L +    ++  + 
Sbjct: 104 TDIRRQLKFHFPDAKVKVQSVGEQVAVSGVVDSEATRDDIYRLVATLLGRDKTEKWDKTQ 163

Query: 181 S------------------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
                                    + ++  + +A   QV +K+++A+V     + +G  
Sbjct: 164 KLEFKSDSSDYEEPESMVFARNMTWEGIIERIEVATTQQVNVKISVAQVTESFGQTVGVD 223

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S  GSS G                     V    D  +  T++ AL        LAEP 
Sbjct: 224 WSTVGSSVGEF-------------------VFDQFDAANLSTLITALGNDQIAEVLAEPN 264

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LT +SG+SASF  GG+      +SS    +++  ++G+ L  T  VLS  +I +++  EV
Sbjct: 265 LTVLSGESASFLVGGEVPVIVSTSSN--VNISFKEFGIKLDLTAKVLSQDKIRMQLAPEV 322

Query: 337 SEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           SE    +      +P    R+A TTVEL  G + VL GL+     +  + IP +  IP+L
Sbjct: 323 SEVEGYVEAAGIKVPQLASRRAMTTVELADGDSFVLGGLMSSADLEKMQKIPFVGDIPVL 382

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           GA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 383 GAAFRKATTERKRTELIIVATVNLVEPMKPKDIQLP 418


>gi|322419944|ref|YP_004199167.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320126331|gb|ADW13891.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 493

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 164/388 (42%), Gaps = 35/388 (9%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGK----QMLNLDILIERDIAHLEMTLRRFIADSN 135
            + S   + L G  +G  ++I+               D+ +  D   +E  L+       
Sbjct: 115 EILSEYVLKLDGTAIGSTSMIIWTKGEGDERPAPTFFDLKVTGDREAIENQLKEMAPKET 174

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I V+  SDTVVL G V   Q   +A E+++ F               KV+N + +    Q
Sbjct: 175 IVVQYASDTVVLSGNVANDQTKTKAFEIAKAFAP-------------KVINNMTVNVPQQ 221

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
           V L+V +A+V +  LK++G    I GS++    +  A   G     G   +         
Sbjct: 222 VLLQVKVAQVDKSSLKKLGISFLIKGSTAEGFSNLVAGPDGAVTGIGTGAATGIGDFPSL 281

Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                           VL AL      + LAEP L   S Q   F +G +     + S+ 
Sbjct: 282 DSFQAGVSYFPAGIGAVLSALSSKGLAKVLAEPNLLVRSSQEGYFLAGSKIPIAILESTG 341

Query: 303 GA--TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGDMPSYRVRKADTT 359
           G   TS+     G+ L F P VL  G I L+I   EVS     +     P    R  +T+
Sbjct: 342 GQATTSIRYEPVGIKLKFKPEVLENGMISLKINPAEVSSIQGFLPVNGYPIIDTRTVETS 401

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VEL  G +++LAGLL++D  +    IPLL  IPILGALFR+S  + +E E+    TP +V
Sbjct: 402 VELKDGESLILAGLLQEDEIKNMSKIPLLGDIPILGALFRSSSSDIKEKELVFFITPKIV 461

Query: 420 KPVAMR-DLSRPDD-HYSVEDDAKAFFF 445
           +P A    +  P D   + E + +  + 
Sbjct: 462 QPTAPGVKVEMPTDKKLTPEQEKELSWM 489


>gi|320101627|ref|YP_004177218.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
 gi|319748909|gb|ADV60669.1| type II and III secretion system protein [Isosphaera pallida ATCC
           43644]
          Length = 712

 Score =  244 bits (622), Expect = 3e-62,   Method: Composition-based stats.
 Identities = 101/536 (18%), Positives = 192/536 (35%), Gaps = 102/536 (19%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-------DV 79
           P  +     +  + ++      ++S+ + +  ++Q+       ++ +P  A       DV
Sbjct: 151 PNPRPITGQIAELFELIQDPSVELSVVVGRGKVIQLREQPLRFILGNPRIATLSFPPSDV 210

Query: 80  VVH-------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
                       R   ++G   G   + +   +        + +  D   ++  +R    
Sbjct: 211 QSLAQLDRPSDARLFVVYGIQAGTTTLTIWDKNN-VPTTFLVRVSVDTLDIQNQIRAVFP 269

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE--------------------------- 165
            +++ V   ++ ++L G V   +     + L                             
Sbjct: 270 GTDVTVRQSANQIILEGQVPDTKTMNEVIRLVNGLLVSNQAGEVRAPTGAGGGGGGQSVG 329

Query: 166 --TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217
                 ++  ++  +  S +++N L + G  Q+ LKV +AE+ R  +++IG         
Sbjct: 330 AFAAAERALGDEAPSGISPQIINRLRVPGPRQILLKVKLAELNRTAIREIGANWLRGRNN 389

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----------------------------- 248
           S+ GS  G    F  +   +  +     S                               
Sbjct: 390 SLIGSQIGGIAGFTTETNTQMTAAFAAPSFGRPGIAGGQPIPGSVTGSLIQGIDTLLNAT 449

Query: 249 ------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                       G+     F+  L+AL        LAEP LTA+ GQ A   +GG+  + 
Sbjct: 450 AGSALQPSAQLFGIFRAGEFDLFLNALRTNNLATILAEPNLTALDGQPARVIAGGEIPFP 509

Query: 297 TVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346
                          ++    +G +L F P +L    I L ++   S P  G    +N  
Sbjct: 510 VPQLGAGGGGGGAVITIQFRPFGAILTFLPQILEDDLIRLDVEPVFSTPNQGLGTSINGT 569

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P +  R A T V+L  G T+ +AGL++ + Q     IPLL   PI+G LF  +RF   
Sbjct: 570 AVPGFNTRSARTVVQLREGETLAIAGLIQKNNQAATNRIPLLGDAPIVGPLFSRNRFETL 629

Query: 407 ETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           ETE+ +  TP+L+ P+   ++   P D+    +D + F   R     G    S ++
Sbjct: 630 ETELIVIVTPYLIAPMGEGEVPKVPTDYVDEPNDIEFFILGRTEGKTGIPHRSTIQ 685


>gi|153833257|ref|ZP_01985924.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148870528|gb|EDL69443.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 456

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 109/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F   +GQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHISVKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQSRLIVYGIDEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L  T L +
Sbjct: 94  SDRIIVDLDLTEIRRQLKFHFPDAKVTVQSVGEQVAVGGVVDSEETRDEIYRLVATLLGR 153

Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++  +                          K ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWDKTYKFEFKSDYAQYEEPEGMIFARNMTWKGIVERIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IVSTNNNVNISFKEFGIKLDLTAKVLSQD 312

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    +      +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGVKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPILGAAFRKATTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|188592032|ref|YP_001796630.1| type II secretion system protein; precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|170938406|emb|CAP63393.1| putative Type II secretion system protein; putative precursor
           [Cupriavidus taiwanensis LMG 19424]
          Length = 475

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 97/463 (20%), Positives = 181/463 (39%), Gaps = 45/463 (9%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +Q+T    +++       ++A +       A        +    +++ +       L+  
Sbjct: 8   IQKTSAHAVTLRRRLLQLTLAAMIATTAWCALAPRAQAQDAATARQLRLMAGAQKELRSA 67

Query: 64  VDVQDVLVSDPTKADVVVHSPR---TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
             V+ V V +P  AD ++   R   ++ L  K  G  +V++    G +  N  +      
Sbjct: 68  QPVERVAVGNPAVADALILRTRGAPSVLLVAKQPGVTDVMVWTRGGAEPQNYSV------ 121

Query: 121 AHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                 +     D+N  ++   +  V + G       +           +++      + 
Sbjct: 122 -----QVDAIAPDANGAQLGYSAAGVTITGQSPDAYGAA-----RAQAAARAATAGKTDG 171

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
               V++   +     V + V + E+ + +LK++G       S         +       
Sbjct: 172 KPGLVVDRSTVPLSGTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGTFSPSTLNKFTF 231

Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
           + G   +                              +  LE     R LAEP+L A+SG
Sbjct: 232 TPGSGGAPGSFSADIASPMSNAFNLVAASLTHGIFANISLLEANGLARVLAEPSLVALSG 291

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           QSASF +GG+     V  + G T++    +G+ L  +PTVLS  RI L++  E S+    
Sbjct: 292 QSASFLAGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSADRIALKVAPEASDLDPS 350

Query: 343 ----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               +N   +P+   R+ADTTVEL  G + V+ GL+  +       +P+L  +P++GA F
Sbjct: 351 RGISINGAVVPAIVTRRADTTVELGDGESFVIGGLVSRNTVSNVNKVPVLGDLPVIGAFF 410

Query: 399 RNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVED 438
           +N  F++E+ E+ I  TP LVKP+A       +   D  +   
Sbjct: 411 KNLNFHQEDRELMIVVTPRLVKPMAKNSPAAQAVGADGRTSAS 453


>gi|149188846|ref|ZP_01867136.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
 gi|148837266|gb|EDL54213.1| hypothetical Flp pilus assembly protein [Vibrio shilonii AK1]
          Length = 453

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 104/415 (25%), Positives = 186/415 (44%), Gaps = 47/415 (11%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
             +    +  I +N    +++   +  V VSDP   D  V +  ++ +F K VGQA +++
Sbjct: 22  SSMAYSGETYITVNDAKNIELSERITKVFVSDPDIVDYNVINENSIVIFSKAVGQARLMI 81

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            G   K + +  I+ + D++ +   +     D+++++E V + V + G+V + ++     
Sbjct: 82  YGESEKLLYSERIIADIDLSQVRRQVALLFPDTSVKIESVGNQVAVSGIVNSERERDDIY 141

Query: 162 ELSETFLSQSGRNQYANSSS------------------------KKVMNLLNIAGEDQVT 197
            L  T L +    ++                               ++  L +A   QV 
Sbjct: 142 RLVATLLGREKLEKWDKVQKLKFQNDNISIEEPESMIFERNMTWDGIIERLEVATVQQVN 201

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           +K+++A+V     + +G   S  G++ G                     +    +     
Sbjct: 202 VKISVAQVTERFAETVGVDWSSFGANVGQF-------------------LFQQFEAADLT 242

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           T++ AL      + LAEP LT ISG+SASF  GG+     + S+    ++T  ++G+ L 
Sbjct: 243 TLITALGNENVAQVLAEPNLTVISGESASFLVGGEVPV--IVSTNNNVNITFKEFGIKLD 300

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            T  VL+  +I +++  EVSE    I     ++P    R+A TT+EL  G + VL GL+ 
Sbjct: 301 LTAKVLTEEKIRMQLFPEVSEIERYIRAAGIEVPQLATRRAMTTIELGDGDSFVLGGLMS 360

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
               +  +  PL+  IP+LGA FR S  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 361 SADFEEIQKTPLIGDIPVLGAAFRKSSTDRRRTELIIVATVNLVKPMKRKDIQLP 415


>gi|116620532|ref|YP_822688.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223694|gb|ABJ82403.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 529

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 95/418 (22%), Positives = 178/418 (42%), Gaps = 32/418 (7%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
                    G GK + + + K +I+  P+++Q + V++    + V  +P+ + + GK  G
Sbjct: 50  ASQDVQPAPGPGK-LMVTVGKSLIIDSPMNIQRISVANGELIEAVAVNPKEVLINGKAAG 108

Query: 96  QANVILIGHDGKQMLN--LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           +  +I+    G ++L      +    +  +   L R   D  I V   ++   + G V+ 
Sbjct: 109 ETTLIIWQQGGNRLLYDLTVRISPVRLDVVRQQLARDFPDDEINVTYDNEVAFVRGRVKD 168

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDIL 210
           +  + R + ++ +                K +NLL +       Q+ L V  A V R   
Sbjct: 169 LSAADRVMAIAASL--------------GKTVNLLRVDVPPVETQILLHVRFANVDRGAS 214

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----GDFSVKGVLDRFSFETVLHALER 265
             +G   +    +   + +          ++G        ++       +    + ALE 
Sbjct: 215 TDLGVSLATGAFNQSTAITTGQYPPPTVGTDGRVSISDALNILLFRKDINLGATIKALES 274

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVLHFTPTVL 323
              + TLAEP + AI+G+ A+F +GG+     V      GA S+T  ++G+ ++F P + 
Sbjct: 275 KRMLETLAEPNVMAINGKPAAFIAGGEFPVPMVQGGGLAGAVSITFREFGIRINFLPKIT 334

Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
             G I L +  EVS       +      +P+   R+  T VEL +G + V+AGLL +   
Sbjct: 335 PRGTIQLAVAPEVSSLDYSNAVTFQGYTIPALATRRIQTEVELETGQSFVIAGLLDNRTT 394

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           +    IP LS IP+LG LF++    +  TE+ +  TP +V+P+       P  + +V 
Sbjct: 395 ETLNKIPGLSNIPLLGKLFQSRAVAKNNTELMVIVTPEIVRPIQAGQ-PLPSLNMTVP 451


>gi|172060495|ref|YP_001808147.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
 gi|171993012|gb|ACB63931.1| type II and III secretion system protein [Burkholderia ambifaria
           MC40-6]
          Length = 461

 Score =  243 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 108/448 (24%), Positives = 169/448 (37%), Gaps = 45/448 (10%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQA 97
                    I + +     +     +Q V V DPT ADV++        + L  K  G  
Sbjct: 36  ASIASASGTIELAVGAQRQISAGRALQRVAVGDPTIADVLIMKGSRSGSVLLTAKAPGAT 95

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           NV+L      +     I +      ++      +  S  +V+    T VL G   T+   
Sbjct: 96  NVMLWERGHDEPTVWSIEV------VDAAAHAVLDGSMPQVKAYGGTSVLRGTSATLDAH 149

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           +RA  +++    +      +  + K V+ +                E  R +LKQ+GF  
Sbjct: 150 ERAATVAKNMSPKGTVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNF 198

Query: 218 ---------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                           +   + G     A             F++            L  
Sbjct: 199 FKQSNGFSFGSFSPGGVQSYNGGSGPGTAGYIPALGAPVASAFNLVVNAAGRGIFADLSL 258

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE     R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTV
Sbjct: 259 LEANNMARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTV 317

Query: 323 LSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L P RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+    
Sbjct: 318 LGPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQT 377

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
                 +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           
Sbjct: 378 MSNVSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PG 432

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           +        V + Y    AS      + 
Sbjct: 433 ELSEQRDGPVWRSYLGGAASPDAAPGFS 460


>gi|78066131|ref|YP_368900.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
 gi|77966876|gb|ABB08256.1| Flp pilus assembly protein secretin CpaC [Burkholderia sp. 383]
          Length = 443

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 186/469 (39%), Gaps = 49/469 (10%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L     +++ L     + AA              IS+ +     L     +Q V V DP+
Sbjct: 5   LIGLAIALSALAMPPLSGAA---------DTSGTISLAVGAQRQLATGRALQRVAVGDPS 55

Query: 76  KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
            ADV+V       + L  K+ G  NV++      +    ++ +    A      R  +  
Sbjct: 56  VADVMVVKGGRGGVLLIAKSAGATNVMIWERGHDEPTVYNVSVTSGAA------RALLDG 109

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
               V     T V+ G   ++   QRAV  ++T   + G    A++ S K +  +++   
Sbjct: 110 GTSSVNTYGGTTVIGGASGSLDGHQRAVHAAKTVSGKDGTTIDASTISGKNVVQVDVRVV 169

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
                     E  R +LKQ G       +                 S GG          
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSITGSPGGALTYNTNVPI 219

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V  S
Sbjct: 220 SSAFNLVVNSVSHGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
            G  S+    YGV L  TPTVL+P RI L++  E S+      I +N   +P+   R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLNPRRIALKVAPESSQLDFVHSITINGVQVPALTTRRAD 338

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  TP 
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQSDKELVIIVTPH 398

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           LV P+A    S P    +   +        V + Y    AS   G  + 
Sbjct: 399 LVAPIAQGA-SLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|218459699|ref|ZP_03499790.1| cpaC pilus assembly Q protein [Rhizobium etli Kim 5]
          Length = 409

 Score =  243 bits (619), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 110/416 (26%), Positives = 187/416 (44%), Gaps = 32/416 (7%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           +R   T     L +   +   L P     A+    S       + +++  N+ + L    
Sbjct: 6   RRIARTKSLAALAAVFSACVCLGPGFAGFASAQEKSVTLGKSVQHVTLPPNETLTLNTGQ 65

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
              D+++      DVV  S R++++ GK +G  N+ + G D   +  +DI +  D + + 
Sbjct: 66  PFGDLVIGSADMIDVVPLSDRSLFVRGKKIGATNISVYGDDKSLLGVIDIRVASDFSEVA 125

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             +R     + +RV   +D + L G+VR   + QR +E+++++            S + V
Sbjct: 126 SAIRSAAPSARVRVVNSNDRIRLVGVVRDGIELQRVLEIAQSY------------SEQPV 173

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------- 235
           +N L ++   QV L+V I E  R   + +G   S  GS+     + +             
Sbjct: 174 LNQLRVSDSQQVMLEVRIIEASRQTGRDLGIGWSGQGSNGIGKATTSQGITVNDDGNLAR 233

Query: 236 ---------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                       +  G   +    +   + + V++ALE+   +R LA+P L A+SG +AS
Sbjct: 234 TLLDPKGAATGMLPFGQLIAKVLQISGGNIDVVINALEQKGLVRRLAQPNLIAMSGSTAS 293

Query: 287 FTSGGQHL--YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           F +GG+      T + +T AT      +GV L F P VL  G I L I+ EVSE    +N
Sbjct: 294 FHAGGEVPILKTTNNGTTVATETDYRPFGVRLTFKPVVLDDGVINLEIEPEVSELDPAIN 353

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               P +  R A TTV L  G +  +AGLL+    +  + +P L +IP+LGALFR+
Sbjct: 354 VNGNPGFISRAASTTVALRDGQSFAMAGLLQSINAKDIQQLPGLGQIPVLGALFRS 409


>gi|163801677|ref|ZP_02195575.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174594|gb|EDP59396.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 456

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 106/406 (26%), Positives = 184/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    + V   +  V +S+P  AD  V +  T+ +F K VG + +++ G +   +L
Sbjct: 34  SITLNDGKHISVKQPIGKVFISNPDIADYKVINDTTLVVFAKGVGHSRLLVYGANEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   L+    D+ + V+ V + V + G+V + +       L    L +
Sbjct: 94  SDRIIVDLDLTQIRRQLKFHFPDAKVTVQSVGEQVAVSGVVDSEETRDAIYRLVANLLGR 153

Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++ +SS                         + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKTEKWESSSKRSFKSDHGTFEEPESMIFARNMTWEGIIEQIQVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   +  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWNSVGSSVGGF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+       ++   T+++  ++G+ L     VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPVIISDANG--TNISFKEFGIKLDLAAKVLSQD 312

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    +      +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFIGDIPILGAAFRRATTERKRTELIIVATVNLVEPIKPKDVHLP 418


>gi|261856884|ref|YP_003264167.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
 gi|261837353|gb|ACX97120.1| type II and III secretion system protein [Halothiobacillus
           neapolitanus c2]
          Length = 443

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 95/423 (22%), Positives = 159/423 (37%), Gaps = 30/423 (7%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           +V   S         +++   + ++   P  +  V V +    +V V   R M +     
Sbjct: 22  SVPVFSADAPALPDAVTMYAGQALVRSAPGSLLRVAVGNGKLVEVRVLGRRQMVIIANQA 81

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRT 153
           G  ++ L   DG +      ++  +   +   +R  +  S  + V  V   VVL G+  T
Sbjct: 82  GDTSLQLWMRDGSRRSIDLHIVSGNTDQVAELVRTLLKASKAVSVNTVGGNVVLSGVNLT 141

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            +D  +   + + +       Q              +  +  V +KV I E  +  L QI
Sbjct: 142 QEDVAQIAAIKKVYPQVLDFTQANA-----------VQMKPMVMMKVRIMEFDKSALHQI 190

Query: 214 GFQHSITGSSSGP-----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
           G +        G                  S       G   +      +        S 
Sbjct: 191 GIKWDSVIDGPGGALAHDFASNSLYRMTPSSFGGIGANGAVNLPLSLSGTPAFFGLVTSI 250

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
            + ++ + +      LA P L A SG +A F  GG+          G TSV    YG+ L
Sbjct: 251 TSKINLMMQTGNAWELATPQLAARSGGTADFLVGGEVPIPIA-QGLGQTSVEYKPYGIKL 309

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           H  P V S G I   I+ E+S     V     P +  RKA T V +  G TIV++GL+  
Sbjct: 310 HIEPVVSSTGDISTTIKAEISHIDPSVTVQGYPGFLTRKASTEVNVHEGQTIVISGLVDS 369

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
              +  + +P L +IP+LG LFR+  F  + +++ I  TP+LV P A  + +       +
Sbjct: 370 SASKTIDKVPGLGQIPVLGELFRSRDFKSKRSDLVIFVTPYLVTPDAPLNKALISKSNKL 429

Query: 437 EDD 439
            D+
Sbjct: 430 ADE 432


>gi|322434104|ref|YP_004216316.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321161831|gb|ADW67536.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 484

 Score =  241 bits (616), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 111/503 (22%), Positives = 194/503 (38%), Gaps = 64/503 (12%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVA------------KLPPIKEANAAVINISDVEIGKGK 48
           M   +R   T     L     ++                    A+ A   +   ++G  +
Sbjct: 1   MNVKKRIPLTSFVPALLLLAGTLPFNPCSAFAQSVQAPGDSPTAHEARKRMDMHDMGGDE 60

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + + +   ++L    +++ + V +PT        P  + L  K  G +++++    G+ 
Sbjct: 61  TLHLLVGHSMVLHSTSNIKRIFVGNPTVLQSYTGGPSEIVLTAKATGVSSLVVWDTQGQS 120

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
            L   I  + D   L+ ++      S I V      + L G V T + S  A +L+ ++ 
Sbjct: 121 CL-YTIAADMDPETLQRSMHDAYPKSQIDVGGHEGRIFLSGTVPTQEASDNAFKLASSYS 179

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                          V+N + +      QV LK+ I EV R  ++Q G       +S+  
Sbjct: 180 KD-------------VVNSIRVVTIHGKQVQLKLRIVEVDRTKMEQFGINLFRPTASNAV 226

Query: 227 SKSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                  F                      ++     +             +  LE+   
Sbjct: 227 GGLTTGQFPSLATYATGTPATATAPAVPATINVNNPLNFFIYSFSHEIGATIQDLEQKQI 286

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLS 324
           ++ LAEPTLTA+SGQSA F SGG+  +  V     A     +++   YGV + FTPTV  
Sbjct: 287 LQVLAEPTLTAMSGQSAKFLSGGEFPFPVVQGGGSAAGVAITISFRPYGVKVDFTPTVNE 346

Query: 325 PGRIGLRIQTEVS----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            G I L++  EVS       + ++   +P+   R+A+T VE+ +G T  L GLL     +
Sbjct: 347 DGSIHLKVAPEVSTLDFSNAVTISGFTIPALSTRRAETEVEILNGQTFALTGLLDHRTTE 406

Query: 381 LKEGIPLLSKIPILGALF-RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV--- 436
               IP +S++PILG LF     +     E+ +  T  +V P     L++P D       
Sbjct: 407 SLSQIPGISRLPILGKLFATTKSYTHSVIELVVLVTANVVDP-----LTQPTDTTQPDMA 461

Query: 437 -EDDAKAFFFNRVNKIYGPKEAS 458
             +  K+ F N ++K     +  
Sbjct: 462 VPNLDKSVFDNDLSKEQKLPKKP 484


>gi|156977409|ref|YP_001448315.1| Flp pilus assembly protein, secretin CapC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156529003|gb|ABU74088.1| hypothetical protein VIBHAR_06196 [Vibrio harveyi ATCC BAA-1116]
          Length = 456

 Score =  241 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 105/406 (25%), Positives = 183/406 (45%), Gaps = 47/406 (11%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI L+    + +   +  V +S+P  AD  V +  T+ +F   +GQA +I+ G D   +L
Sbjct: 34  SITLHDGQHISLKQPIGKVFISNPDVADYKVINDTTLVVFANGIGQARLIVYGIDEDVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ D+  +   ++    D+ + V+ + + V + G V + +       L  T L +
Sbjct: 94  SDRIIVDLDLTDVRRQIKFNFPDAKVTVQSIGEQVAVSGFVDSEETRDEIYRLVATLLGR 153

Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++  +                          + ++  + +A   QV +K+++A+V 
Sbjct: 154 EKIKKWDKADKFEFKSDYAQYEAPEGMIFARNMSWRGIVERIEVATTQQVNVKISVAQVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               K +G   S  GSS G                     V    D  +  T++ AL   
Sbjct: 214 ESFGKTVGVDWSSVGSSVGEF-------------------VFDQFDAANLSTLITALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LAEP LT +SG+SASF  GG+     + S+    +++  ++G+ L  T  VLS  
Sbjct: 255 QVAEVLAEPNLTVLSGESASFLVGGEVPV--IISTNNNVNISFKEFGIKLDLTAKVLSKD 312

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++  EVSE    +      +P    R+A TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIRMQLAPEVSEVESYVEAAGIKVPQLASRRALTTVELADGDSFILGGLMSSADLEKMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           IP +  IPILGA FR +   R+ TE+ I AT  LV+P+  +D+  P
Sbjct: 373 IPFVGDIPILGAAFRKAMTERKRTELIIVATVNLVEPIKPKDVQLP 418


>gi|116626779|ref|YP_828935.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229941|gb|ABJ88650.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 471

 Score =  241 bits (614), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 101/434 (23%), Positives = 183/434 (42%), Gaps = 42/434 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  +    A       A A    +        +  ++   +  +L    D+  V +S+P 
Sbjct: 7   LLRAALISAVWAAGCFAQATKPQV--------RDFTLLEGRGELLTFQNDITKVAISEPK 58

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            AD VV SPR + +  K  G+A +++    G   +  +I + +D    +M  +  I  + 
Sbjct: 59  IADAVVISPREVMVNAKGPGRATLVVW-ETGLDPVRYEIAVTKDTTEWDMFTKSMIDSAG 117

Query: 136 --IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I +    DT+VL G+V++  D++R   +++T          A   ++           
Sbjct: 118 VPIHITGSGDTIVLSGVVKSADDAKRLAGMAQTRAKTVINLLQAPPPAE----------P 167

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEG 242
            Q+ L+V  A + R  L QIGF    T      + S                 G+ V+  
Sbjct: 168 RQILLQVKFAAIDRVALTQIGFNLFSTNDKFIGASSTEQFSSPRFSQLQPTGTGQTVNFS 227

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              ++       +    + ALE    ++ LAEP L  + G+ A+F +GG   Y T++++ 
Sbjct: 228 DLLNLFAFRPDLNIGATIKALEERNLLQILAEPNLLCLDGKEATFLAGGTFPYPTITTTP 287

Query: 303 GAT------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYR 352
                    +V    +GV L F PTV   G I L++Q EVS       + +    +P+  
Sbjct: 288 TGGATAPVITVQFKPFGVKLDFQPTVTPQGSIDLKVQPEVSSLDYANAVTLQGFVIPALS 347

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A+T + L  G +  +AGL+ + + +    +P L  +P+LG +FR+    +   E+ +
Sbjct: 348 QRRAETEIILKDGESFAIAGLIDNRVIETLSKVPGLGDLPVLGKIFRSRSTQKSADELLV 407

Query: 413 AATPFLVKPVAMRD 426
             TP  VKP+   +
Sbjct: 408 VVTPHFVKPLTPEE 421


>gi|161524905|ref|YP_001579917.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189350345|ref|YP_001945973.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
 gi|160342334|gb|ABX15420.1| type II and III secretion system protein [Burkholderia multivorans
           ATCC 17616]
 gi|189334367|dbj|BAG43437.1| pilus assembly protein [Burkholderia multivorans ATCC 17616]
          Length = 443

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 167/445 (37%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++       ++ L  K  G  NV+
Sbjct: 21  ASASGTIELAVGAQRQISAGRPLQRVAVGDPAIADVLIMKGSRSSSVLLIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     + +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWSVEV------VDAAAHAVLDDSAPRVNAYGGTAVLRGTSASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V + +    +      +  + K V+ +                E  R +LKQ+GF     
Sbjct: 135 VAVGKNMAGKGAVIDRSTLAGKSVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183

Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +         +                           F++            L  LE 
Sbjct: 184 SNGFSFGSFLPSGVQSFGGGSGPGSAGYIPTLGSPVASAFNLVVNAAGRGIFGDLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A               +  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQRDGPVWRSYLGGVASPDAAPGFS 442


>gi|206559894|ref|YP_002230658.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
 gi|198035935|emb|CAR51827.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315]
          Length = 443

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L     +++ L     ++AA              IS+ +     +     +Q V V DP+
Sbjct: 5   LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55

Query: 76  KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
            ADV+V       + L  KN G  NV++      +    ++ +    A      R  +  
Sbjct: 56  VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           ++  V     T V+ G   T+   QRAV  ++T   + G    A++ S K +  +++   
Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
                     E  R +LKQ G       +                 + GG          
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFSFGAFAPTGLTSISGTPGGSLTYNTSVPI 219

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V  S
Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
            G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  TP 
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           LV P+A      P    +   +        V + Y    AS   G  + 
Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|187926427|ref|YP_001892772.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|241665914|ref|YP_002984273.1| type II and III secretion system protein [Ralstonia pickettii 12D]
 gi|187728181|gb|ACD29345.1| type II and III secretion system protein [Ralstonia pickettii 12J]
 gi|240867941|gb|ACS65601.1| type II and III secretion system protein [Ralstonia pickettii 12D]
          Length = 454

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 101/438 (23%), Positives = 181/438 (41%), Gaps = 41/438 (9%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +      +  +    AA ++ +  E     + + +       +++   ++ + + +P  A
Sbjct: 4   AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63

Query: 78  DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           D ++   R    ++ +  K  G ANV++    G      ++ ++             +  
Sbjct: 64  DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            +  V    DT V+ G  +          L+    S +  +         V++  ++   
Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242
             V + V + E  + +LK+ GF            +  PS      FG   +S       G
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F++            L  LE     R LAEP+L A+SGQSA+F +GG+     V  + 
Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
           G T++    +G+ L  +PT+LS  RI L++  E S+      + +N   +P+   R+ADT
Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G + V+ GL+        + +P L  +PI+G  F+   +N+EE E+ I  TP L
Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPHL 405

Query: 419 VKPVAMRDLSRPDDHYSV 436
           VKP+A      P D    
Sbjct: 406 VKPMARNA---PIDKMLP 420


>gi|107022594|ref|YP_620921.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116689543|ref|YP_835166.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|170732847|ref|YP_001764794.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
 gi|105892783|gb|ABF75948.1| type II and III secretion system protein [Burkholderia cenocepacia
           AU 1054]
 gi|116647632|gb|ABK08273.1| type II and III secretion system protein [Burkholderia cenocepacia
           HI2424]
 gi|169816089|gb|ACA90672.1| type II and III secretion system protein [Burkholderia cenocepacia
           MC0-3]
          Length = 443

 Score =  240 bits (612), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 121/469 (25%), Positives = 189/469 (40%), Gaps = 49/469 (10%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L     +++ L     ++AA              IS+ +     +     +Q V V DP+
Sbjct: 5   LIGLAIALSALAMPPLSDAA---------DTSGTISLAIGAQRQIATGRALQRVAVGDPS 55

Query: 76  KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
            ADV+V       + L  KN G  NV++      +    ++ +    A      R  +  
Sbjct: 56  VADVLVVKGGRGGVLLVAKNAGATNVMIWERGRDEPTVYNVNVTSGAA------RALLDG 109

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           ++  V     T V+ G   T+   QRAV  ++T   + G    A++ S K +  +++   
Sbjct: 110 TSPSVNTYGGTTVIGGAAGTLDGHQRAVHAAKTVGGKDGTTLDASTISGKNVVQVDVRVV 169

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--------- 244
                     E  R +LKQ G       +                 + GG          
Sbjct: 170 ----------EFSRSVLKQAGLNFFKQSNGFAFGAFAPTGLTSITGTPGGSLTYNTSVPI 219

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F++            L  LE     R LA+PTL A+SGQSA+F +GG+     V  S
Sbjct: 220 SSAFNLVVNSVSRGLFADLSILEANNLARVLAQPTLVALSGQSANFLAGGEIPVP-VPQS 278

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKAD 357
            G  S+    YGV L  TPTVLSP RI L++  E S+      I +N+  +P+   R+AD
Sbjct: 279 LGTISIEWKPYGVGLTVTPTVLSPRRIALKVAPESSQLDFVHSITINSVQVPALTTRRAD 338

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G + V+ GL+  +       +P L  +PI+GA F+N  + + + E+ I  TP 
Sbjct: 339 TTVELGDGESFVIGGLIDRETTSNVNKVPFLGDLPIIGAFFKNLSYQQNDKELVIIVTPH 398

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           LV P+A      P    +   +        V + Y    AS   G  + 
Sbjct: 399 LVAPIAQGA-PLP----ATPGELSEQRDGPVWRSYLGGMASPDAGPGFS 442


>gi|307944371|ref|ZP_07659712.1| putative type III secretion component [Roseibium sp. TrichSKD4]
 gi|307772717|gb|EFO31937.1| putative type III secretion component [Roseibium sp. TrichSKD4]
          Length = 411

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 98/398 (24%), Positives = 169/398 (42%), Gaps = 18/398 (4%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
                   I++     I+L+    V  V +     A+V   + + +Y+ G   G  N+++
Sbjct: 15  SSSNAAPPINLTKGFGILLRFNEPVASVFIGSNEIAEVQAVNEKAIYVSGLTAGTTNLLV 74

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           + +D   + +  I++          L   I + ++ V+   +T ++ G V  I D+    
Sbjct: 75  MNYDNDIIRSHAIVVHPVNNETSYLLENLIPNGDVTVQSSGNTSIIRGNVDNIDDADDIR 134

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           E+                  +KV++    +   QV+LKV I E+ R  L ++GF  S   
Sbjct: 135 EVKTRL----------EEQGRKVIDKTTTSTPVQVSLKVRIVELYRADLIKLGFDVSSVS 184

Query: 222 SSSGPSKSFAADFGGKFVSEGGD-------FSVKGVLDRFSFETVLHALERATAIRTLAE 274
           S S       +     F+S             + G  + F+   +L  LE+   I+ LAE
Sbjct: 185 SGSVFKVVTGSGIAQDFMSTLIGSVEGQTRVGISGANNSFNVNAMLDLLEKRGYIQILAE 244

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P LT ++G+ A+F SGG+    +V+   G  +    + G+ + F P +L   +I + I +
Sbjct: 245 PRLTTVTGEKATFRSGGEF-AVSVNQGNGVFTAEYKETGISIDFIPEILPGDKISIDISS 303

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E+            P+  VR   T  ++ SG T  LAGL +      K G P LSKIP+ 
Sbjct: 304 EIKFVDPQSVVNSAPALLVRSVQTNAQVASGQTFALAGLYQLTQSSSKSGPPYLSKIPVF 363

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           G L   +  +REE E+    TP+LV      +  +P D
Sbjct: 364 GNLLSKTNESREERELIFFITPYLVHSSVPIEKKQPTD 401


>gi|309778769|ref|ZP_07673542.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
 gi|308922477|gb|EFP68101.1| roadblock/LC7 domain protein [Ralstonia sp. 5_7_47FAA]
          Length = 454

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 100/438 (22%), Positives = 181/438 (41%), Gaps = 41/438 (9%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +      +  +    AA ++ +  E     + + +       +++   ++ + + +P  A
Sbjct: 4   AAMVRGWMGGLALGCAAFVSSAFAETAPTGQTLHLLTGSQREIRLGKPLERIAIGNPEIA 63

Query: 78  DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           D ++   R    ++ +  K  G ANV++    G      ++ ++             +  
Sbjct: 64  DALLLKGRGTATSVLIIAKKPGAANVMVWTQGG-VATTYNVQVDAAAP---------VPG 113

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            +  V    DT V+ G  +          L+    S +  +         V++  ++   
Sbjct: 114 -DPAVVAQGDTAVVSGQPKD------VYALARARRSAAAASGAEKPKDGNVIDTTSMNVP 166

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGPSKSFAADFGGKFVSE------G 242
             V + V + E  + +LK+ GF            +  PS      FG   +S       G
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFTFGRTRGGFDFRTFAPSSLSKVTFGSNGLSTESTMPIG 226

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F++            L  LE     R LAEP+L A+SGQSA+F +GG+     V  + 
Sbjct: 227 SAFNLLVSSVSKGLFADLSLLESNGMARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 285

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
           G T++    +G+ L  +PT+LS  RI L++  E S+      + +N   +P+   R+ADT
Sbjct: 286 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 345

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G + V+ GL+        + +P L  +P++G  F+   +N+EE E+ I  TP L
Sbjct: 346 TVELGDGESFVIGGLVSRSTLSNVDKVPFLGDVPVIGTFFKRLNYNQEERELVIIVTPHL 405

Query: 419 VKPVAMRDLSRPDDHYSV 436
           VKP+A      P D    
Sbjct: 406 VKPMARNA---PIDKMLP 420


>gi|325518465|gb|EGC98164.1| pilus assembly protein [Burkholderia sp. TJI49]
          Length = 429

 Score =  240 bits (611), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 106/445 (23%), Positives = 166/445 (37%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++        + L  K  G  NV+
Sbjct: 7   ASASGTIELAVGTQRQISAGRSLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 66

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +     + +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 67  LWERGRDEPTVWSVEV------VDAAAHAVLDDSTPRVNAYGGTAVLRGTSASLDAHERA 120

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V + +    +      +  + K V+ +                E  R +LKQ+GF     
Sbjct: 121 VAVGKNMAGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 169

Query: 221 GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +                                     F++            L  LE 
Sbjct: 170 SNGFSFGSFSPGGVQSYGGGSGPGTAGYIPTLGSPVASAFNLVVNAAGHGIFGDLSLLEA 229

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+  +       G+T++    YG+ L  TPTVLSP
Sbjct: 230 NNLARVLAEPTLVALSGQSASFLAGGEIPFP-SPQGLGSTAIQWKQYGIGLSLTPTVLSP 288

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 289 QRIALKVAPESSQLDYVNSVTISGVSVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 348

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A               +  
Sbjct: 349 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGELS 403

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 404 EQRDGPVWRSYLGGVASPDAAPGFS 428


>gi|221213139|ref|ZP_03586115.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
 gi|221167352|gb|EED99822.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD1]
          Length = 443

 Score =  240 bits (611), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
              G  I + +     +     +Q V V DP  ADV++        + +  K  G  NV+
Sbjct: 21  ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
           V + +    +      +  + K V+ +                E  R +LKQ+GF     
Sbjct: 135 VAVGKNVSGKGAVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183

Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265
               +  S  P    + + G    S G            F++            L  LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A                  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442


>gi|221197781|ref|ZP_03570827.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
 gi|221204661|ref|ZP_03577678.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221175518|gb|EEE07948.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2]
 gi|221181713|gb|EEE14114.1| bacterial type II/III secretion system protein [Burkholderia
           multivorans CGD2M]
          Length = 443

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 112/445 (25%), Positives = 173/445 (38%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
              G  I + +     +     +Q V V DP  ADV++        + +  K  G  NV+
Sbjct: 21  ASAGGTIELAVGAQRQISAGRALQRVAVGDPAIADVLIMKGSRSGAVLVIAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++      + DS  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAHAVLDDSTPRVNTYGGTSVLRGTAASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
           V + +    +      +  + K V+ +                E  R +LKQ+GF     
Sbjct: 135 VAVGKNVSGKGTVIDRSTLAGKNVVQVDVRVV-----------EFSRSVLKQVGFNFFKQ 183

Query: 218 --SITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALER 265
               +  S  P    + + G    S G            F++            L  LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYNGGAGPGSAGYLPTLGAPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 QRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A                  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLNYQQNDKELLIIVTPHLVAPIAKGAALPAT-----PGQLS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V + Y    AS      + 
Sbjct: 418 EQRDGPVWRSYLGGAASPDAAPGFS 442


>gi|116694140|ref|YP_728351.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
 gi|113528639|emb|CAJ94986.1| flp pilus assembly protein, secretin [Ralstonia eutropha H16]
          Length = 470

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 91/417 (21%), Positives = 166/417 (39%), Gaps = 40/417 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR---TMYLF 90
           A        E    +++ +       ++    V+ V V +P  AD +V   R   ++ L 
Sbjct: 33  ALAPRAQAQEAVNARQLRLLAGAQKEIRSAQPVERVAVGNPAVADALVLRTRGAPSVLLV 92

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
            K  G  +V++    G + L  ++ ++      +            ++   +    + G 
Sbjct: 93  AKQPGVTDVMVWTRGGAEPLTYNVQVDAIAPDAD----------GAKLGYSAAGATITGQ 142

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                 +           +++      +     V++   +     V + V + E+ + +L
Sbjct: 143 SPDAYAAA-----RAQAAARAATTGKTDGKPGLVVDRSTVPLSGTVQVDVKVVEISKTVL 197

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---------------- 254
           K++G       S         +       + G   +                        
Sbjct: 198 KEVGINFFRNNSGFAFGTFSPSTLNKFTFTPGSGGAPGSFSADIASPMSNAFNLVAASLT 257

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 +  LE     R LAEP+L A+SGQSASF +GG+     V  + G T++    +G
Sbjct: 258 HGIFANISLLEANGLARVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQFKPFG 316

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIV 369
           + L  +PTVLS  RI L++  E S+        +N   +P+   R+ADTTVEL  G + V
Sbjct: 317 IGLTVSPTVLSADRIALKVAPEASDLDPSRGISINGAVVPAIVTRRADTTVELGDGESFV 376

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + GL+  +       +P+L  +P++GA F+N  F++E+ E+ I  TP LVKP+A   
Sbjct: 377 IGGLVSRNTVSNVNKVPVLGDLPVIGAFFKNLNFHQEDRELMIVVTPRLVKPLAKGA 433


>gi|163857691|ref|YP_001631989.1| putative Flp pilus assembly secretin [Bordetella petrii DSM 12804]
 gi|163261419|emb|CAP43721.1| putative Flp pilus assembly secretin [Bordetella petrii]
          Length = 464

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 109/478 (22%), Positives = 185/478 (38%), Gaps = 35/478 (7%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +++      +   + ++       P   +  A     +       + IS+ +    +L +
Sbjct: 4   WMKPRMRASLLCTVLATAGVFYGAPVAGQ--ARPAEPAAAAPAASQDISLAVKGQQLLPL 61

Query: 63  PVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
           P     + V+DP  ADV V       P  + L GK+ G   V +   + +      + + 
Sbjct: 62  PGTPTRIAVADPDVADVKVLPAAAGRPAAVMLIGKSAGTTQVQVWARNSRSPATWTVHVT 121

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
             +   +  L+R        V++     V+ G   +    Q +V  +   +        A
Sbjct: 122 GPV---QAELQRRGQAGGANVDVAGTHAVVSGHAPSALSHQNSVAAAAASVGDKNVVDVA 178

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----AD 233
            + S  V+ +     E             R ++KQ+G   +      G     +    + 
Sbjct: 179 TAGSGGVVQVEVKVVEV-----------SRSVMKQVGLSMTGNAGGWGFGSRTSPDGFST 227

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G              + D   F   L  L+     R LAEPTL A+SGQSASF +GG+ 
Sbjct: 228 PGTLNPRGVLSDGFNLLFDSNHFGATLRMLQSNGMARVLAEPTLVALSGQSASFLAGGEI 287

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNA 345
                    G  +V    +G+ L  TPTVLS  RI L++  E SE           G  A
Sbjct: 288 PIPES-GGLGTQNVVFKPFGIGLTVTPTVLSRDRIALKVAPEASELDYVNGIPILNGETA 346

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+ R R+ADT +EL  G + V++GL+    +     +P L ++PI+GA FR   +++
Sbjct: 347 TLIPALRTRRADTMIELGDGESFVISGLVSRQTKASVNKVPFLGELPIIGAFFRGIEYSQ 406

Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           EE E+ I  TP LV+P+A    L  P +     D     +   +    G ++      
Sbjct: 407 EEHELVIVVTPRLVRPIARGVALPLPGERQERPDSITNAWGYYLMGPAGGQQVPGFSR 464


>gi|283778969|ref|YP_003369724.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437422|gb|ADB15864.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 684

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 105/510 (20%), Positives = 186/510 (36%), Gaps = 63/510 (12%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A   P  E +         +I     + + L +  IL      + + + D + A   V 
Sbjct: 138 MANPVPTAEVSQRFDRFIQRKIDPENTLEVILGRPRILVFNETPKRIYLPDESIAAFQVI 197

Query: 83  SPRTMYLFGKNVGQANVILI---GHDGKQMLNLDILIERDIAHLEMTL-----------R 128
             R + + G++VG   + L       GK+++   ++       L+  L            
Sbjct: 198 DDRQISIVGRSVGSTALNLWVIDPETGKEIVLSYLVKVLPEPQLKERLEAVYAGLEREIN 257

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS--------- 179
           +    S I++ ++ D + + G      ++ + +++         ++++            
Sbjct: 258 QAFPRSKIQLSLIGDQLAVRGQAHDAVEANQILQIVARHSPTKSQDEFGRPVQYVQQAAF 317

Query: 180 --------------------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                                     +   ++NLL I GE QV L+VT+AEV R   + I
Sbjct: 318 IDQQRDPLVDQDQAFLRQTVVDSALLARSGIINLLQIPGEQQVMLRVTVAEVNRTAARSI 377

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   S+  ++ G +              G   +V   LD       ++AL      +TLA
Sbjct: 378 GLNFSVQ-NNQGTTVFQNLTGQLGAAGGGNLSNVLASLDNGQVILAINALRSLRLAKTLA 436

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLR 331
           EP LT ++GQ A+F +GG      +    G          +GV + FTP V+   RI L+
Sbjct: 437 EPNLTTLNGQQATFRAGGSFPVPQIGGLGGTGLQGTVFVPFGVSIEFTPYVIDRDRIRLK 496

Query: 332 IQTEVSEPVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   VS     +              +     R  D+TVEL  G T+ +AGL++ ++   
Sbjct: 497 LSAGVSVRDESLGTSIGGSAGAGGTQVAGLNSRTFDSTVELREGQTLAVAGLIQTNMGAD 556

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS-RPDDHYSVEDDA 440
            + +P    +PI+G     SR    E E+ I  TP LV P+   D    P        D 
Sbjct: 557 SDRVPFWGDLPIIGHTGGFSRTTAGEQELVILVTPELVHPLEACDTPSLPGADVFETGDI 616

Query: 441 KAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           + +  N +         S V     +   G
Sbjct: 617 EFYLGNHLEARRMRDYRSTVRTDFARIRAG 646


>gi|91775995|ref|YP_545751.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709982|gb|ABE49910.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 453

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 104/425 (24%), Positives = 181/425 (42%), Gaps = 40/425 (9%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            ++I + + +  + +  V +Q V V++P    V + SP+TM +  K VG   + L     
Sbjct: 27  AEEIMVSMGQQRLYEHTVTLQRVAVANPEVLAVTLTSPKTMMIVPKAVGATEISLWDSQS 86

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            Q   +  +       LE    +    + ++VE   + + L G  R++++  RA+E  + 
Sbjct: 87  VQPSRVLQVSVTPSLALEGQGLKAADAAGLQVEAAGNGLALSGEARSLEEHARALESLQK 146

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--- 223
               +     +   S              V + + + EV R    + GF      S+   
Sbjct: 147 ERQGALDVTSSEFDSH-------------VQIDIKVVEVSRQNAMRFGFLMGKNNSASRD 193

Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                            S  F       F+     F+V            L  LE     
Sbjct: 194 GFGIVASPNSFSGVEAGSGGFDFSSTSGFLPVLNAFNVVFGNHGSGLLGTLSILEGNGFA 253

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGR 327
            TLAEP+L+AISGQ+A+F +GG+      +     +++T    +YGV L  TPT+LS  R
Sbjct: 254 YTLAEPSLSAISGQTATFLAGGEFPVPIRTGGGSDSAITIRYKEYGVRLMLTPTILSGER 313

Query: 328 IGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L++  EVSE      +      +P  +VR+ +T+V L +G + V++G++  +     +
Sbjct: 314 IFLKVAPEVSELDFANAVQTGGVAVPGLKVRRTETSVSLGNGESFVISGMVSRNTINNID 373

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSV--EDD 439
            +P L  IPI+GA F + RF+RE+ E+ +  TP LV+P+A      + P           
Sbjct: 374 KVPGLGNIPIIGAFFSSKRFDREDKELLMVVTPRLVRPIARNAELPALPGSELKHYKPSF 433

Query: 440 AKAFF 444
           ++ F 
Sbjct: 434 SEFFL 438


>gi|238762407|ref|ZP_04623378.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
 gi|238699392|gb|EEP92138.1| Type II/III secretion system protein [Yersinia kristensenii ATCC
           33638]
          Length = 379

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 171/372 (45%), Gaps = 25/372 (6%)

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
               ++ ++ K  G A  IL   + + +    +L+   I      ++    +S+I +  +
Sbjct: 1   MGKNSIIVYAKQEGTAEFILFNQNNQPIKKSAVLVNNTITAANKRIQIEYPESDIEINKI 60

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMNLLNIAGEDQV 196
             + +L GM  + +     V +    +         +          ++N + + G +QV
Sbjct: 61  GTSYILTGMAESEEAKDTIVSIIGEAIGSKKTIDTDSQYLNTPEYYGIINKIKLMGTNQV 120

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            +K+TIAEV +D  + IG   S  G  SG  +    +    F + G              
Sbjct: 121 NVKLTIAEVTKDFSENIGVDWSTIGDFSGSFQLVKLNSLNNFSARG-------------I 167

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
             ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +T +T  ++G+ L
Sbjct: 168 SALVHAINDDSIARVLAEPNLSVLSGESASFLVGGEIPM--VNTTQNSTVITYKEFGIKL 225

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +    V    RI + +  EVS              PS+R RKA TT+EL  G + +L GL
Sbjct: 226 NIGAKVNEKKRIRIMLDEEVSSIDKVFNIDGGNAYPSFRTRKAATTLELGDGESFILGGL 285

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           + +  ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+PV+ R++  P  +
Sbjct: 286 ISNSERESLKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRPVSEREVELP--N 343

Query: 434 YSVEDDAKAFFF 445
           +      + FF 
Sbjct: 344 FMHTSTLERFFN 355


>gi|187923645|ref|YP_001895287.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187714839|gb|ACD16063.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 468

 Score =  238 bits (607), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 111/469 (23%), Positives = 186/469 (39%), Gaps = 41/469 (8%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            S+    A      +A  A            + I + +     + V   +Q V + DP+ 
Sbjct: 21  VSAATDAAGPAQRAQAAPAAQPHQAAFAPPAQGIDLTVGAQRQIAVGHTLQRVAIGDPSV 80

Query: 77  ADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           ADV++        + L GK  G  N++L   D    L   + +    A         +  
Sbjct: 81  ADVLIIKGDKRGGVLLVGKAAGTTNLMLWSRDRDAPLQYTVNVTTPAAA------SLLGA 134

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
               V+++  T ++ G   T++  QRAV  +E  L + G     ++ + + +  +++   
Sbjct: 135 DTPAVKVLGGTAIVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQVDVRVV 194

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
                     E  R +LK++GF      +         +       + G           
Sbjct: 195 ----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSLTGVTPI 244

Query: 243 -GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F++            L  LE     R LAEPTL A+SGQSASF +GG+     V  +
Sbjct: 245 SSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPIP-VPQA 303

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357
            G+TS+    YGV L  TPTVLSP RI L++  E S+      + ++   +P++  R+AD
Sbjct: 304 LGSTSIEFKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAFTTRRAD 363

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTVEL  G + V+ GL+  +       +PLL  +P++G  F+   + + E E+ I  TP 
Sbjct: 364 TTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELVIIVTPH 423

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           LV P+A               +        V +      A+      + 
Sbjct: 424 LVSPLARGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDASPGFS 467


>gi|296158794|ref|ZP_06841623.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295890999|gb|EFG70788.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 474

 Score =  238 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 115/485 (23%), Positives = 195/485 (40%), Gaps = 49/485 (10%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGK--------KISIGLNKVIIL 60
              + + L + + +     P     AA    +       +        +I++ +     L
Sbjct: 11  AAWLGVALLAVSAATDAAGPAPRGQAAQAAQAAQAAQAAQPALAAPAQRIALTVGAQQQL 70

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            V   +Q V + DP+ ADV++        + L GK  G  N++L   D    L   + + 
Sbjct: 71  AVGHTLQRVAIGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVT 130

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
              A         +      V+++  T V+ G   T++  QRAV  +E  L + G     
Sbjct: 131 TPAAA------SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDT 184

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
           ++ + + +  +++             E  R +LK++GF      +         +     
Sbjct: 185 STVASRAVVQVDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSV 234

Query: 238 FVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             + G              F++            L  LE     R LAEPTL A+SGQSA
Sbjct: 235 SATAGQAPSMTGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSA 294

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341
           SF +GG+     V  + G+TS+    YG+ L  TPTVLSP RI L++  E S+      +
Sbjct: 295 SFLAGGEVPIP-VPQALGSTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            ++   +P++  R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+  
Sbjct: 354 TISGVSVPAFITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQL 413

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            + + E E+ I  TP LV P+A    S P    S   +        V +      A+   
Sbjct: 414 NYQQNEKELVIIVTPHLVSPLAKGA-SLP----STPGEQSEQRNGPVWRSLIGGVAARDS 468

Query: 462 GQNYK 466
              + 
Sbjct: 469 SPGFS 473


>gi|167570105|ref|ZP_02362979.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 434

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V  +VQ V V DP  ADV+V       + L  K 
Sbjct: 7   VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 66

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+    T V+ G   T
Sbjct: 67  AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 120

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ L +    + G    A++   K +  +++             E  R +LKQ 
Sbjct: 121 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 170

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261
           G       +         +                        F++            L 
Sbjct: 171 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 230

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 231 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 289

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+  +
Sbjct: 290 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 349

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 350 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 404

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 405 GELSEQRDGPVWRSYLGGALSPDAGPGFS 433


>gi|171317113|ref|ZP_02906316.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171097747|gb|EDT42574.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 443

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/450 (23%), Positives = 169/450 (37%), Gaps = 45/450 (10%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVG 95
                      I + +     +     +Q V V DP  ADV++        + L  K  G
Sbjct: 16  TVASLASASGTIELAVGAQRQISAGRTLQRVAVGDPAVADVLIMKGSRSGSVLLTAKAPG 75

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             NV+L      +     + +      ++   +  +  S  RV     T VL G   ++ 
Sbjct: 76  ATNVMLWARGRDEPTVWSVEV------VDAAAQAVLDGSTPRVNAYGGTAVLQGTAASLD 129

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
              RA  +               S+   V++   + G++ V + V + E  R +LKQ+GF
Sbjct: 130 AHARASAV-----------GKNMSAKGNVIDRSTVVGKNVVQVDVRVVEFSRSVLKQVGF 178

Query: 216 QHSITGSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVL 260
                 +                                     F++            L
Sbjct: 179 NFFKQSNGFSFGSFSPGGVQSYSGGAGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADL 238

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
             LE     R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TP
Sbjct: 239 SLLEANNLARVLAEPTLVALSGQSASFLAGGEIPVP-APQGLGSTAIQWKQYGVGLTLTP 297

Query: 321 TVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TVL+P RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+  
Sbjct: 298 TVLNPNRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDR 357

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                   +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +         
Sbjct: 358 QTMSNVSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT----- 412

Query: 437 EDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
             +        V + Y    AS      + 
Sbjct: 413 PGELSEQRDGPVWRSYLGGVASPDAAPGFS 442


>gi|167562915|ref|ZP_02355831.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 432

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 110/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V  +VQ V V DP  ADV+V       + L  K 
Sbjct: 5   VLLSFAARAAEMGTIELATGAQRQVSVGRNVQRVAVGDPNVADVLVVKGGRGSVLLVAKA 64

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+    T V+ G   T
Sbjct: 65  AGSTSLMVWERGRDEPAVYTVNVVSGAA------RALLDGGSPSVKAYGGTAVVSGSAAT 118

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ L +    + G    A++   K +  +++             E  R +LKQ 
Sbjct: 119 LDAHARALALGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 168

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLH 261
           G       +         +                        F++            L 
Sbjct: 169 GLNFFKQNNGFTFGAFAPSGLASVTGGATPSMSVSANIPISSAFNLVVGSATRGLFADLS 228

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+  +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 403 GELSEQRDGPVWRSYLGGALSPDAGPGFS 431


>gi|254245567|ref|ZP_04938888.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
 gi|124870343|gb|EAY62059.1| Flp pilus assembly protein, secretin CpaC [Burkholderia cenocepacia
           PC184]
          Length = 443

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 107/445 (24%), Positives = 170/445 (38%), Gaps = 45/445 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
                 I + +     +     +Q V V DP  ADV++        + L  K  G  NV+
Sbjct: 21  ASASATIELAVGAQRQISAGRTLQRVAVGDPAIADVLIMKGSRSGSVLLTAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++   +  +  +  RV     T VL G   +++   RA
Sbjct: 81  LWERGRDEPTIWNVEV------VDAAAQAVLDGAAPRVNAYGGTAVLQGSAASLEAHSRA 134

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             + +    +             V++   + G+  V + V + E  R +LKQ+GF     
Sbjct: 135 AAVGKNMSGKGV-----------VIDRSTVPGKSVVQVDVRVVEFSRSVLKQVGFNFFKQ 183

Query: 221 GSSSGPSKSFAADF---------------GGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            +                                     F++            L  LE 
Sbjct: 184 SNGFSFGSFSPGGVQSYSGGSGPGTGGYVPTLGSPVASAFNLVVNAAGRGIFADLSLLEA 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R LAEPTL A+SGQSASF +GG+          G+T++    YGV L  TPTVLSP
Sbjct: 244 NNLARVLAEPTLVALSGQSASFLAGGEIPVP-SPQGLGSTAIQWKQYGVGLSLTPTVLSP 302

Query: 326 GRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            RI L++  E S+      + ++   +P    R+ADTTVEL  G + V+ GL+       
Sbjct: 303 SRIALKVAPESSQLDFVNSVTISGVAVPGITTRRADTTVELGDGESFVIGGLIDRQTMSN 362

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
              +PLL  +PI+G  F+N  + + + E+ I  TP LV P+A   +           +  
Sbjct: 363 VSKVPLLGDLPIIGTFFKNLSYQQNDKELLIIVTPHLVAPIAKGAVLPAT-----PGELS 417

Query: 442 AFFFNRVNKIYGPKEASEVEGQNYK 466
                 V K Y    AS      + 
Sbjct: 418 EQRDGPVWKSYLGGAASPDAAPGFS 442


>gi|156975620|ref|YP_001446527.1| Flp pilus assembly protein secretin [Vibrio harveyi ATCC BAA-1116]
 gi|156527214|gb|ABU72300.1| hypothetical protein VIBHAR_03353 [Vibrio harveyi ATCC BAA-1116]
          Length = 449

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 112/405 (27%), Positives = 187/405 (46%), Gaps = 47/405 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           I ++    ++V   +  V VSDP   D  V +  T+ +F K VGQA  I+ G   K +L+
Sbjct: 28  ITVSDGQHIEVKEPISTVFVSDPEIVDYNVVNENTVVVFAKEVGQARFIIYGKSKKVLLS 87

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             I+++ D++ +   ++    + NI+VE V + V + G+V + Q       +  T L + 
Sbjct: 88  DRIIVDIDLSLVRRQIKLHYPELNIKVESVGNQVAVSGVVESEQQRDDIYRMVATLLGRD 147

Query: 172 GRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVRR 207
              ++  +                          + ++ L+ +A + QV +K+++A+V  
Sbjct: 148 KTEKWEETQVLEFENEAYDIEEPQSMIFARNMTWEGILELIEVATDQQVNVKISVAQVTE 207

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              + +G   S  G+  G                     +    D     T++ AL    
Sbjct: 208 TFSQTVGVDWSSVGADVGEF-------------------LFQQFDAADLTTLITALGNEN 248

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP LT ISG+SASF  GG+        +    ++T  ++G+ L  T  VL  G+
Sbjct: 249 VAQVLAEPNLTVISGESASFLVGGEVPVIVT--TNNNINITFREFGIKLDLTAKVLHEGK 306

Query: 328 IGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I +R+  EVSE    I     ++P +  R+A TT+EL  G + VL GL+     +  + I
Sbjct: 307 IRMRLMPEVSEVERYIRSAGLEVPQFATRRAMTTIELGDGDSFVLGGLMSSADLEELKKI 366

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           PLL  IP+LGA FR +  +R  TE+ I AT  LVKP+  +D+  P
Sbjct: 367 PLLGDIPVLGAAFRKASTDRRRTELIIVATVNLVKPMKKKDIQMP 411


>gi|115351456|ref|YP_773295.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281444|gb|ABI86961.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 444

 Score =  236 bits (603), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 102/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95
           +     G    I + +     +     +Q + V DP   DV+V       ++ L  K  G
Sbjct: 19  VLTEAAGTNASIDLAVGSQRQVAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             NV+L      +    ++        ++   +  +  S  +V+      VL G   ++ 
Sbjct: 79  STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGSAPKVKGYGGAAVLSGSSASLD 132

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +RAV + +    + G    A++   + +  +++             E  R +LK+ G 
Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263
                 +                      F+  G +                    +  L
Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R LA+PTL A+SGQSASF +GG+     V  + G+T++    YGV L  TPTVL
Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301

Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L++  E S+      + +N+  +P+   R+ADTTVEL  G + V+ GL+  +  
Sbjct: 302 SQHRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +P+L  +PI+GA F++  + + + E+ I  TP LV P+A      P    +   +
Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
                   V + Y    AS      + 
Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443


>gi|83718419|ref|YP_443059.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|167582062|ref|ZP_02374936.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
 gi|167620224|ref|ZP_02388855.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
 gi|257139289|ref|ZP_05587551.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83652244|gb|ABC36307.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 441

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 112/449 (24%), Positives = 175/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V   VQ V + DP+ ADVVV       + L  K 
Sbjct: 14  VLLSFAARAAEMGTIELATGAQRQIAVGRGVQRVAIGDPSVADVVVIKGGRGGVLLVAKA 73

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N+++      +     + +    A      R  +   +  V+  + T V+ G   T
Sbjct: 74  AGSTNLMVWERGRDEPSVYTVNVASGAA------RALLDGGSPSVKAYNGTAVVSGSAAT 127

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ + +    + G    A++   K +  +++             E  R +LKQ 
Sbjct: 128 LDAHARALAVGKGMAGKDGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQA 177

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
           G       +         A             SV   +                    L 
Sbjct: 178 GLNFFKQSNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+  +
Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 356

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440


>gi|299069498|emb|CBJ40767.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CMR15]
          Length = 467

 Score =  236 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 91/438 (20%), Positives = 171/438 (39%), Gaps = 40/438 (9%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           ++              A         +  G+ + +       +++   ++ + + +P  A
Sbjct: 17  AAVVRGWMGALALGWVALAPAAHAQGMPAGQVLHLLSGSQREIRLGKPLERIAIGNPEVA 76

Query: 78  DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           D ++        ++ +  K  G AN+++    G  +     +                  
Sbjct: 77  DALLLKGHGAAGSLLIIAKKPGAANILVWTQGGTALTYNVQVDAEPRGA----------- 125

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            +  + +   T VL G V+          L+    S +            +++   +A  
Sbjct: 126 GSPDLAVQGSTAVLTGQVKD------VYSLARARKSAAVAGGAEPPKGGNMIDNTTLAVP 179

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V + V + E  + +LK+ GF  + T           +      V+     +       
Sbjct: 180 GTVQVDVRVVEFSKTVLKEAGFIFTRTRGGFTFGSFSPSTLTQYTVTPTSLTTQSTTPIG 239

Query: 254 FSFETVLH-----------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +F  ++             +E     R LAEP+L A+SGQSA+F +GG+     V  + 
Sbjct: 240 TAFNLLISSFSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQAL 298

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
           G T++    +G+ L  +PT+LS  RI L++  E S+      + +N   +P+   R+ADT
Sbjct: 299 GTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADT 358

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TVEL  G + V+ GL+        + +P L  +PI+G  F+   +N+EE E+ I  TP L
Sbjct: 359 TVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPIIGTFFKRLDYNQEERELVIIVTPRL 418

Query: 419 VKPVAMRDLSRPDDHYSV 436
           V+P+A      P D    
Sbjct: 419 VRPMARNA---PIDKMLP 433


>gi|170701752|ref|ZP_02892688.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133335|gb|EDT01727.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 444

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 101/447 (22%), Positives = 176/447 (39%), Gaps = 41/447 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH---SPRTMYLFGKNVG 95
           +     G    I + +     +     +Q + V DP   DV+V       ++ L  K  G
Sbjct: 19  VLTEAAGTNASIDLAVGSQRQIAAGRTLQRIAVGDPAVVDVLVMKGSHAGSVLLVAKAPG 78

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             NV+L      +    ++        ++   +  +  +  +V+      VL G   ++ 
Sbjct: 79  STNVLLWERGRDEPTVWNV------NVVDAAAQAALDGTGPKVKAYGGAAVLSGSSASLD 132

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +RAV + +    + G    A++   + +  +++             E  R +LK+ G 
Sbjct: 133 AHERAVAVGKRMGGKDGTVIDASTVGNRSVVQVDVRVV----------EFSRSVLKEAGL 182

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHAL 263
                 +                      F+  G +                    +  L
Sbjct: 183 NFFKQSNGFAFGAFSPGGLQSVTGGATSAFAATGGIPIASAFNLVVNSAGRGIFGNISIL 242

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     R LA+PTL A+SGQSASF +GG+     V  + G+T++    YGV L  TPTVL
Sbjct: 243 EANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQALGSTAIDWKQYGVGLTLTPTVL 301

Query: 324 SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           S  RI L++  E S+      + +N+  +P+   R+ADTTVEL  G + V+ GL+  +  
Sbjct: 302 SQRRIALKVAPESSQLDFQHGVTINSVSVPAITTRRADTTVELGDGESFVIGGLIDRETM 361

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +P+L  +PI+GA F++  + + + E+ I  TP LV P+A      P    +   +
Sbjct: 362 SNISKVPVLGDLPIIGAFFKSLNYQQNDKELVIIVTPHLVAPIAKGA-PLP----ATPGE 416

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
                   V + Y    AS      + 
Sbjct: 417 LSEQRDGPVWRSYLGGIASPDAAPGFS 443


>gi|312882144|ref|ZP_07741893.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309370190|gb|EFP97693.1| pilus assembly protein CpaC [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 456

 Score =  235 bits (600), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 105/437 (24%), Positives = 188/437 (43%), Gaps = 63/437 (14%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           SI LN    +QV + +  V +S+P  AD  V +  T+ ++   VGQ+ +I+ G D   +L
Sbjct: 34  SITLNDGQHIQVNMPIGKVFISNPEVADYKVINENTLVVYANEVGQSRLIVYGTDSSVLL 93

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +  I+++ +++ +   L+    D  ++V+ +   V + G+V + +       L  T L +
Sbjct: 94  SDRIVVDLNLSEVRRQLKFHYPDVQVKVQSIGTQVAVSGVVDSEETRDDIYRLVATLLGR 153

Query: 171 SGRNQYANSSS------------------------KKVMNLLNIAGEDQVTLKVTIAEVR 206
               ++                             + ++  + +    QV +K++IA V 
Sbjct: 154 EKTEKWNQVEKLTFESENTRYEEPESMVFARNMTWEGIIERIKVTTTQQVNVKISIAHVT 213

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + +G      G+  G                     V    +  +  T++ AL   
Sbjct: 214 ESFGQTVGIDWGSIGARVGSF-------------------VFDQFNAANLGTIISALGND 254

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + LAEP LT +SG+SASF +GG+     +  +    +V+   +G+ L+ T  VLS  
Sbjct: 255 EIAQVLAEPNLTVLSGESASFLAGGEVPVIVL--NDRNLTVSFKQFGIGLNLTAKVLSRD 312

Query: 327 RIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I +++   VSE    V      +P + +RKA TTVEL  G + +L GL+     +  + 
Sbjct: 313 KIQMQLAPSVSEVEGFVEFEGLKVPQFTLRKALTTVELSDGDSFILGGLMSSADFEEMQK 372

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-------------- 430
           +P++  IP+ GA FR ++  R+ TE+ I AT  LV+PV   D+  P              
Sbjct: 373 VPVIGDIPLFGAAFRKAKTERKRTELIIVATVNLVEPVRPNDIQVPYINKTSTLERWLNI 432

Query: 431 --DDHYSVEDDAKAFFF 445
             DD +    DA     
Sbjct: 433 NSDDSFQPSSDATIRLL 449


>gi|91783011|ref|YP_558217.1| putative outer membrane channel signal peptide protein, CpaC like
           [Burkholderia xenovorans LB400]
 gi|91686965|gb|ABE30165.1| Putative outer membrane channel signal peptide protein, CpaC like
           protein [Burkholderia xenovorans LB400]
          Length = 454

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 111/475 (23%), Positives = 191/475 (40%), Gaps = 41/475 (8%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M+++   +     A+     +A  A            ++I++ +     L V   +Q + 
Sbjct: 1   MLAVSAATDAAGPAQRGQAAQAAQAAQAAQPTLAAPAQRIALTVGAQQQLAVGHTLQRIA 60

Query: 71  VSDPTKADVVVHSPRT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           + DP+ ADV++        + L GK  G  N++L   D    L   + +    A      
Sbjct: 61  IGDPSVADVLIIKGDKRGGVLLVGKAAGTTNLMLWARDRDAPLQYTVDVTTPAAA----- 115

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              +      V+++  T V+ G   T++  QRAV  +E  L + G     ++ + + +  
Sbjct: 116 -SLLGPDTPAVKVLGGTAVVSGTSATMEAHQRAVVAAEGSLGKDGAVFDTSTVASRAVVQ 174

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
           +++             E  R +LK++GF      +         +       + G     
Sbjct: 175 VDVRVV----------EFSRSVLKEVGFNFFKQNNGFTFGSFAPSALSSVSATAGQAPSM 224

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                    F++            L  LE     R LAEPTL A+SGQSASF +GG+   
Sbjct: 225 TGVTPISSAFNLIFNSATHGLFANLSLLESNNLARVLAEPTLVALSGQSASFLAGGEVPI 284

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
             V  + G TS+    YG+ L  TPTVLSP RI L++  E S+      + ++   +P++
Sbjct: 285 P-VPQALGTTSIEFKPYGIGLTLTPTVLSPQRIALKVAPEASQLDFANAVTISGVSVPAF 343

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ADTTVEL  G + V+ GL+  +       +PLL  +P++G  F+   + + E E+ 
Sbjct: 344 ITRRADTTVELGDGESFVIGGLIDRETASNVSKVPLLGDLPVIGTFFKQLNYQQNEKELV 403

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           I  TP LV P+A               +        V +      A+      + 
Sbjct: 404 IIVTPHLVSPLAKGATLPST-----PGEQSEQRNGPVWRSLIGGVAARDSAPGFS 453


>gi|332284569|ref|YP_004416480.1| putative outer membrane protein [Pusillimonas sp. T7-7]
 gi|330428522|gb|AEC19856.1| putative outer membrane protein [Pusillimonas sp. T7-7]
          Length = 474

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 109/470 (23%), Positives = 189/470 (40%), Gaps = 45/470 (9%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L      +A+      +  A+             +++ + +V +L +P DV  V V D 
Sbjct: 6   ILLGCLLMMAQHSGAAPSQEAM-------------LNLQVGEVKVLGIP-DVARVAVGDG 51

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD- 133
              + V    + + +F ++ G   + +   DG++      +    +  ++  LR  +   
Sbjct: 52  HIINAVATDEKEVIVFARHEGSTALQIWSADGQRWQYQIEVAPEGLRQIQQELRSVLERI 111

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            + ++  V D +V+ G   +  D +R  EL++ +                      +  +
Sbjct: 112 PHAQLSAVGDKLVIEGDDLSDGDRERIAELAKHYPQLLDFTG-------------QVGWD 158

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------KFVSEG 242
             V L V + EV R  L+++G + +   +  G S   A D G              +   
Sbjct: 159 RMVLLDVQVVEVPRIQLQELGLRWNT-ATDGGLSAGLAWDGGSKRLDDRPSESVMPIGFP 217

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              +             ++A+ +      LA+P L A SG +A F +GG+  Y TV  + 
Sbjct: 218 ATMAAGYFGVNALLSARINAMAQKGTAVVLAQPQLLARSGSTAEFLAGGEVPYSTV-DAN 276

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G T+     YGV L  TP +   G +  RI+ EVS     ++  + PS + R+A T   +
Sbjct: 277 GNTNTAFKPYGVSLRITPQIERNGAVRSRIEVEVSSVDNALSVPNGPSLKTRRAATEFNV 336

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV--- 419
            SG T+VLAG L  +     + +P L  IPILG LF++SRF R ETE+ I  TP LV   
Sbjct: 337 RSGQTLVLAGFLSREATHNVDKVPGLGDIPILGELFKSSRFQRHETELAIFVTPVLVGAD 396

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP-KEASEVEGQNYKGA 468
            P   R +   +D               +  +  P   A +V    ++G 
Sbjct: 397 HPGLARRVQLGEDILKTAFPQAPIINASLAPLPKPLVAADQVSWDPWQGP 446


>gi|152989020|ref|YP_001350207.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150964178|gb|ABR86203.1| probable type II secretion system protein [Pseudomonas aeruginosa
           PA7]
          Length = 408

 Score =  234 bits (596), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 92/434 (21%), Positives = 170/434 (39%), Gaps = 71/434 (16%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           +  +A+       + +  ++S+   +   L++ V ++ + + DP  ADV +    ++ + 
Sbjct: 15  QPASALPQGCLELLAQAPQVSVAQGQQNDLRLAVPIKRLAIGDPQIADVQLLDRSSLLVT 74

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           GK  G  ++++      + L   + +E                               G 
Sbjct: 75  GKEQGSTSLLIWTACSAEPLRSQVAVEG-----------------------------RGS 105

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V T          ++                            +QV   +   EV R  L
Sbjct: 106 VDTAAAPALGAGGADEL-------------------------PNQVQTDIRFVEVSRSKL 140

Query: 211 KQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           KQ        G +     +  +           G       G      +     + + ++
Sbjct: 141 KQASTSFVRRGGNLWVLGAPGSLGDIKVNADGSGLGGTFGAGASGFNLIFGGGKWLSFMN 200

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE +    TLA P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPT
Sbjct: 201 ALEGSGFAYTLARPSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPT 260

Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           V++  RI L++  EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +
Sbjct: 261 VMNNRRIALKVAPEVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSN 320

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS 435
                +  P L  IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +   
Sbjct: 321 SVSNVDKFPWLGDIPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPGLPGEGLR 380

Query: 436 --VEDDAKAFFFNR 447
                 ++ +F  R
Sbjct: 381 HYDPGFSRLYFLER 394


>gi|149173675|ref|ZP_01852304.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
 gi|148847205|gb|EDL61539.1| probable type II secretion system protein [Planctomyces maris DSM
           8797]
          Length = 744

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 105/477 (22%), Positives = 195/477 (40%), Gaps = 52/477 (10%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
            +        G   ++ I + +  ++     ++   ++DP+  + V +SP  + + G  +
Sbjct: 134 PLPTQIRSTPGIFDEMEIIIRRSQLIITNSRIRRYAIADPSIIEFVTYSPTEISIVGLEL 193

Query: 95  GQANVILIGHDGKQMLNLDILIERDIA----------HLEMTLRRFIADSNIRVEMVSDT 144
           G   + L        +   +   +D +           LE  +     +S + +  +S  
Sbjct: 194 GTTTLTLWFEGDDTPITYLVHTIQDPSLEGQRRIDYGKLERKIAVLFPNSKVYLIPLSRK 253

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS------------------------- 179
           +++ G      ++   + +    +     N                              
Sbjct: 254 IIVKGEASDATEAANILSVIRGEVINYEGNLGGPQPYGAGGAYGGGYGAAGGVLDGIGNN 313

Query: 180 --SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
             +S  ++N+L I GE QV + VTIA++ R +++Q+G   S+     G  +   +  GG 
Sbjct: 314 GYASSFIVNMLEIPGEFQVMIHVTIAQMNRTMMRQLGVDLSVLFD--GGRQFLGSSMGGV 371

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LY 295
             +      + G+ +      +++AL +    + +A PTLT +SG SASF +GG+     
Sbjct: 372 PST------LTGIFEAGEVNVLINALAQNGTTKIMARPTLTVLSGHSASFLAGGEFAVPT 425

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                    TS T   +G  +  TP V+    I +RI  E S+   G +   +P    R+
Sbjct: 426 IVGVGGAQGTSTTFRGFGTSIVVTPIVIDKDLIRMRIVPEYSQINDGNSVQGIPGLNSRR 485

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAA 414
           A TTVEL  G TIVLAGL   D       IP L +IP++G  LF + + ++ E+E+ I  
Sbjct: 486 AQTTVELREGQTIVLAGLFGHDSSTGVTRIPWLGEIPLVGSYLFSSKQSSQGESELLITV 545

Query: 415 TPFLVKPVAMRDL-SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
           TP LV+P+   ++   P    +V  D + +   +     G  + +  + Q Y    G
Sbjct: 546 TPQLVRPMEEDEVPPYPGFEVTVPQDKELY---KYAMTEGAPDTAVYQLQPYGRGAG 599


>gi|293606490|ref|ZP_06688848.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
 gi|292815113|gb|EFF74236.1| roadblock/LC7 domain protein [Achromobacter piechaudii ATCC 43553]
          Length = 458

 Score =  233 bits (594), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 107/479 (22%), Positives = 188/479 (39%), Gaps = 41/479 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R   T M   L ++      +  + +  A   N         + I++ +     L + 
Sbjct: 1   MKRYQRTTMICVLSAAVAMTYGVVSLAQTTAPGAN------AAARDIAVAVKGQQSLMLD 54

Query: 64  VDV-QDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
                 + + DP  ADV +         ++ L+GK  G   + +   +       ++ + 
Sbjct: 55  GAAPSRIAIGDPEVADVKILPASGKRAGSLLLYGKKAGTTQLQIWTGNNPTPQIWNVRV- 113

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
                ++  L          V++  D  VL G   T      A + +   +        +
Sbjct: 114 --AGSVQAALASRGIQGGPNVDIAGDKAVLSGNAETPLAQIAAAQAAAAAVGDKNVVDVS 171

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            + +  V+ +     E             R ++KQ G   + +      + + A    G 
Sbjct: 172 TAGAGGVVQVEVKVVEV-----------SRSVMKQAGINFAASNGPWAGTSATAPSGLGA 220

Query: 238 FVSEGGDFSVKGVL----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            +       +        D  +F   L  L+     R LAEPTL A++GQSASF +GG+ 
Sbjct: 221 PLGFTPGGIIASGFSLFYDSNNFSARLRLLQSNGMARVLAEPTLVALTGQSASFLAGGEL 280

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVN 344
                    G T+VT   +G+ L  TPTVLS  RI L++  E SE               
Sbjct: 281 PIPEA-GGLGTTTVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYSNGIAINTSADT 339

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +  +P+ R R+ADTTVEL  G + V++GL+    + +   +P+L  +PI+GA FR+  ++
Sbjct: 340 STIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGAFFRSVDYS 399

Query: 405 REETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           +E+TE+ I  TP LV+P+A    L  P       D     +   +    G ++      
Sbjct: 400 QEDTELVIVVTPRLVRPIARGVTLPLPGGRQEAADSTFNAWGYYLMGPVGGQQMPGFSR 458


>gi|167911136|ref|ZP_02498227.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
          Length = 432

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 109/449 (24%), Positives = 174/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V   VQ V ++DP  ADV+V       + L  K 
Sbjct: 5   VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+  + T V+ G   T
Sbjct: 65  AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ + +    + G     ++   K +  +++             E  R +LKQ 
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
           G       +         A             SV   +                    L 
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+  +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRE 347

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|78486068|ref|YP_391993.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78364354|gb|ABB42319.1| Flp (type IV) pilus assembly protein CpaC homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 520

 Score =  233 bits (593), Expect = 6e-59,   Method: Composition-based stats.
 Identities = 98/475 (20%), Positives = 200/475 (42%), Gaps = 69/475 (14%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--GKQMLNLD 113
           +  I++    ++  LV++P  A++ V + + + + GK  G+  +I+       +   ++ 
Sbjct: 37  ESQIVKFDYPIKRALVANPDLANLKVLNSKELLVSGKQAGKTELIIWYKKAPNQVGRHIV 96

Query: 114 ILIERDIA-------HLEMTLRRFIADSNI-----------------RVEMVSDTVVLHG 149
           + +  D +        +   +R+   D  +                  ++ V + +    
Sbjct: 97  LKVAPDASRREEIEQTVSTLIRQLDPDKKVKFVLKNIWIESNSSVRRELDNVGNQIDNDS 156

Query: 150 MVRTIQDSQR-------------AVELSETFLSQSGRNQYANSSSKK-----------VM 185
            +++  +  +                ++  ++          +  K+           V+
Sbjct: 157 TIKSKGNKNQDILQETQKAGSLNIKPVAGNYMVLLTGEVPNKARKKRIQSVISALGLSVV 216

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFAADFGGKF 238
           N++++ G+ Q+ L V +AEV +    + G        +  I    +  +++  +      
Sbjct: 217 NMIDVTGKSQIKLSVRVAEVVKGNPFKSGVAIRDKKDRFGIFPPGNLGTQALFSLNNSPG 276

Query: 239 VSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
            + G  F       +    +  S   VL  LE     R LA+P L   SG++A+F  GG+
Sbjct: 277 DTAGISFPHPDAFQIGFNPENGSIFGVLSLLEGHNLARVLAKPELIVQSGETATFLVGGE 336

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----M 348
                  ++   T V+  +YGV L F+P V   G I + ++ EVS+             +
Sbjct: 337 VAIPVAQNADTIT-VSYKEYGVRLRFSPIVTESGDIQMTVEPEVSDIDAANGTQTNNIII 395

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS+R RK  TT+ L  G + ++ GLL+D+I+     +P+L  IPILGALFR++ +  +++
Sbjct: 396 PSFRSRKTSTTITLAPGQSFIIGGLLQDNIRSQVSKVPVLGDIPILGALFRSNSYVHDKS 455

Query: 409 EIFIAATPFLVKPVAM-RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           E+ I  TP  V PV   + +S P ++     +  AFF  +V ++    E++  E 
Sbjct: 456 ELAIMVTPTFVAPVDAGKKVSLPGENLKRPSNMDAFFLGKVAEVLPEGESALPES 510


>gi|53719509|ref|YP_108495.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76808601|ref|YP_333341.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121598954|ref|YP_993098.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124383520|ref|YP_001026125.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126440403|ref|YP_001058807.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134282202|ref|ZP_01768907.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|167002482|ref|ZP_02268272.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|167719788|ref|ZP_02403024.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167738786|ref|ZP_02411560.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167816009|ref|ZP_02447689.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
 gi|167845916|ref|ZP_02471424.1| type II/III secretion system protein [Burkholderia pseudomallei
           B7210]
 gi|167894492|ref|ZP_02481894.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167902899|ref|ZP_02490104.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|237812067|ref|YP_002896518.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238562618|ref|ZP_00440075.2| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242315526|ref|ZP_04814542.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|254177827|ref|ZP_04884482.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254179957|ref|ZP_04886556.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|254188633|ref|ZP_04895144.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254198005|ref|ZP_04904427.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|254260610|ref|ZP_04951664.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
 gi|254358355|ref|ZP_04974628.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|52209923|emb|CAH35895.1| putative exported fimbriae assembly protein [Burkholderia
           pseudomallei K96243]
 gi|76578054|gb|ABA47529.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|121227764|gb|ABM50282.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|124291540|gb|ABN00809.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126219896|gb|ABN83402.1| type II/III secretion system protein [Burkholderia pseudomallei
           668]
 gi|134246240|gb|EBA46329.1| type II/III secretion system protein [Burkholderia pseudomallei
           305]
 gi|148027482|gb|EDK85503.1| type II/III secretion system protein [Burkholderia mallei
           2002721280]
 gi|157936312|gb|EDO91982.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160698866|gb|EDP88836.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|169654746|gb|EDS87439.1| type II/III secretion system protein [Burkholderia pseudomallei
           S13]
 gi|184210497|gb|EDU07540.1| type II/III secretion system protein [Burkholderia pseudomallei
           1655]
 gi|237503987|gb|ACQ96305.1| bacterial type II/III secretion system protein [Burkholderia
           pseudomallei MSHR346]
 gi|238522203|gb|EEP85649.1| bacterial type II/III secretion system protein [Burkholderia mallei
           GB8 horse 4]
 gi|242138765|gb|EES25167.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106b]
 gi|243061822|gb|EES44008.1| type II/III secretion system protein [Burkholderia mallei PRL-20]
 gi|254219299|gb|EET08683.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710a]
          Length = 441

 Score =  233 bits (593), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V   VQ V ++DP  ADV+V       + L  K 
Sbjct: 14  VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 73

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+  + T V+ G   T
Sbjct: 74  AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 127

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ + +    + G     ++   K +  +++             E  R +LKQ 
Sbjct: 128 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 177

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
           G       +         A             SV   +                    L 
Sbjct: 178 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 237

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 238 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 296

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + GL+  +
Sbjct: 297 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 356

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 357 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 411

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 412 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 440


>gi|307726635|ref|YP_003909848.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307587160|gb|ADN60557.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 642

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 93/467 (19%), Positives = 182/467 (38%), Gaps = 28/467 (5%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           +R  +R   +++   L           P+  A +     +D      + + +   +V IL
Sbjct: 8   VRLRRRVLPSVLVGVLLCEA------APLTLAQSIYSPAADDASAASRVLEMFRGEVRIL 61

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            VP  ++ + + +       V     + L G+  G  ++++    G  +     + + ++
Sbjct: 62  HVPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKSEV 120

Query: 121 AHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                 LR  +   S +R++ +   +VL G++      +  V + ++            +
Sbjct: 121 NASLQQLRAVLKSVSGLRIDAIGSNIVLSGVI-----HRDMVAVVKSATQDMKNVVDTTT 175

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             +        A    V  KV I EV R+  + +G              + +   G    
Sbjct: 176 VDEG------EALRKTVHFKVQIMEVTRNAQRNLGIAWDSAFRGPQIGGAASVATGAAKA 229

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              G       +   +  + ++          LA P L   SG +ASF +GGQ       
Sbjct: 230 VTAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTRSGGTASFLAGGQVPIPQS- 287

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            + G T+V   DYGV L   P V + G I   + TE+S+    V+ G +P +  R   + 
Sbjct: 288 GALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSD 347

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + +G T+ ++GL+  D     +G+P L +IP++G LFR+  F  +++++ I  TP + 
Sbjct: 348 ISMRTGETLAISGLISADAVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLIS 407

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            P    +L+   D  +  D   +     VNK   P+     E +   
Sbjct: 408 DP----ELAPNTDLLARADRIDS---GYVNKFGNPEPLVADEEKAAH 447


>gi|94312586|ref|YP_585795.1| pilus assembly protein [Cupriavidus metallidurans CH34]
 gi|93356438|gb|ABF10526.1| pilus assembly protein [Cupriavidus metallidurans CH34]
          Length = 473

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/407 (20%), Positives = 166/407 (40%), Gaps = 37/407 (9%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH----SPRTMYLFGK 92
                 +    + + +       ++    ++ V V +P  AD ++      P T+ +  +
Sbjct: 44  PPTGSFDTAGSRTLRLLAGAQQEIRPGQALERVAVGNPEVADALLLKHRGGPSTVLVVAR 103

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G  ++ +   D   +     +           +R     +++ +     ++   G   
Sbjct: 104 KPGVTDLKIWSRDVAPVSYTVRV---------DAVRPDPGGASVDLSSAGASI--SGESP 152

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
               + R +  +   +S +   +        V++   +     V + V + E+ + +LK+
Sbjct: 153 DAPAAARTLMAARAAVSSADGKRAGV-----VVDRSTVPVSGTVQVDVKVVEISKTVLKE 207

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVL 260
           IG                 +       + G              F++            L
Sbjct: 208 IGLNFYRDNGGFAFGTFSPSSLTKATFTPGVGTVVDSVSPISSAFNLIAGSVSKGIFANL 267

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
             +E    +R LAEP+L A+SGQSASF +GG+     V  + G T++    +G+ L  +P
Sbjct: 268 SLMEANGLVRVLAEPSLVALSGQSASFLAGGEIPIP-VPQALGTTTIQYKPFGIGLTVSP 326

Query: 321 TVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TV+S  RI L++  E S+        +N   +P+   R+ADTT+EL  G + V+ GL+  
Sbjct: 327 TVMSRERIALKVAPEASDLDPSRGIVLNGATVPAIVTRRADTTIELGDGESFVIGGLVSR 386

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +       +P L  +P++G+ F+N  F++E+ E+ I  TP L+KP+A
Sbjct: 387 NTVSNVSKVPFLGDLPVIGSFFKNLNFHQEDRELMIVVTPHLIKPLA 433


>gi|53723520|ref|YP_102954.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126448299|ref|YP_001080603.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|126452556|ref|YP_001066058.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|167824385|ref|ZP_02455856.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|217423417|ref|ZP_03454918.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|226199666|ref|ZP_03795219.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
 gi|254199896|ref|ZP_04906262.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|254206228|ref|ZP_04912580.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|254297793|ref|ZP_04965246.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|52426943|gb|AAU47536.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126226198|gb|ABN89738.1| type II/III secretion system protein [Burkholderia pseudomallei
           1106a]
 gi|126241169|gb|ABO04262.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147749492|gb|EDK56566.1| type II/III secretion system protein [Burkholderia mallei FMH]
 gi|147753671|gb|EDK60736.1| type II/III secretion system protein [Burkholderia mallei JHU]
 gi|157807445|gb|EDO84615.1| type II/III secretion system protein [Burkholderia pseudomallei
           406e]
 gi|217393275|gb|EEC33296.1| type II/III secretion system protein [Burkholderia pseudomallei
           576]
 gi|225928252|gb|EEH24286.1| type II/III secretion system protein [Burkholderia pseudomallei
           Pakistan 9]
          Length = 432

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V   VQ V ++DP  ADV+V       + L  K 
Sbjct: 5   VLLSFAARAAETGTIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+  + T V+ G   T
Sbjct: 65  AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ + +    + G     ++   K +  +++             E  R +LKQ 
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
           G       +         A             SV   +                    L 
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + GL+  +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|167919159|ref|ZP_02506250.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
          Length = 432

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 108/449 (24%), Positives = 173/449 (38%), Gaps = 40/449 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKN 93
           V+        +   I +       + V   VQ V ++DP  ADV+V       + L  K 
Sbjct: 5   VLLSFAARAAETGAIELAAGTQRQIAVGHGVQRVAIADPNVADVLVIKGGRGGVLLVAKA 64

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  ++++      +     + +    A      R  +   +  V+  + T V+ G   T
Sbjct: 65  AGTTSLMVWERGRDEPAAYTVNVVSGAA------RALLDGGSPSVKAYNGTAVVAGSAAT 118

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +    RA+ + +    + G     ++   K +  +++             E  R +LKQ 
Sbjct: 119 LDAHARALAVGKGMAGKDGGVLDVSTVGGKNVVQVDVRVV----------EFSRSVLKQA 168

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLH 261
           G       +         A             SV   +                    L 
Sbjct: 169 GLNFFKQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLS 228

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE     R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPT
Sbjct: 229 ILEANNLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPT 287

Query: 322 VLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           VLSP RI L++  E S+      I +N   +P+   R+ADTTVEL  G +  + GL+  +
Sbjct: 288 VLSPRRIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFAIGGLIDRE 347

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
                + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +  
Sbjct: 348 TTSNVDKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATP 402

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
            +        V + Y     S   G  + 
Sbjct: 403 GELSEQRDGPVWRSYLGGVLSPDAGPGFS 431


>gi|304311185|ref|YP_003810783.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
 gi|301796918|emb|CBL45131.1| Probable outer membrane channel protein [gamma proteobacterium
           HdN1]
          Length = 470

 Score =  231 bits (588), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 157/401 (39%), Gaps = 19/401 (4%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
            V  G    ISI   +  +L  P +V  V + +   A+        + L G   G  ++ 
Sbjct: 55  PVPPGYDDVISIVQGQTTLLPFP-NVVRVSIGEENLANAQPAGANEILLTGLKAGVTDLR 113

Query: 101 LIGHDGKQ-MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +    GK     L I+       LE++         +     +  V++ G +   QD+  
Sbjct: 114 IWPEHGKAKRYLLKIIDNTWTRVLELSNTVLADIEGVSAREDNGIVLIEGRLLREQDAAV 173

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             +L      +    +   +     + L N+     V L V + EVR+  LK++G Q   
Sbjct: 174 IADLKAKLKKEVKEGKVVFN-----VVLPNVKLAAMVMLDVHVVEVRKQDLKKLGVQWDS 228

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----------RFSFETVLHALERATA 268
             +             G F  +   F      +             S  + L+ L+    
Sbjct: 229 ATAGPAYGVLGQFRGAGNFEKDTSVFGFLMTENRSPIKVGNGYIGTSIGSKLNFLQSNGV 288

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              LA+P L   SG  ASF +GG+    TV+      ++     GV+L  +P     G I
Sbjct: 289 AHVLAQPKLVTRSGSEASFLAGGEIPIPTVTKDNQINTI-FKQVGVILKISPKADPDGFI 347

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              I  EVS+    V    +P +  RK    + + SG T+ ++G+L ++  +  + +P L
Sbjct: 348 ETAINVEVSQVDASVQVLGIPGFITRKTKMEMNVQSGQTMAISGMLSEESSKAIDKMPGL 407

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
             IPILG LF++  F +  TE+ I  TP+LV P + ++   
Sbjct: 408 GSIPILGELFKSRDFRQNTTELMIFVTPYLVDPDSEQNKEL 448


>gi|323529159|ref|YP_004231311.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323386161|gb|ADX58251.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 597

 Score =  231 bits (588), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 88/439 (20%), Positives = 172/439 (39%), Gaps = 23/439 (5%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R  +R   +++   L           P+  A  A  + +D        + +   +V IL+
Sbjct: 9   RLRRRVLPSVLIGVLLCEA------APLALAQGASASATDDASATTHVLEMFRGEVRILR 62

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +P  ++ + + +       V     + L G+  G  ++++    G  +     + + ++ 
Sbjct: 63  LPGTIKRIAIGNGKLITANVVDGN-LMLLGEQDGMTSLVVWNEKGIALQTTVRIAKAEVN 121

Query: 122 HLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                LR  +   S ++++ +   +VL G+V      +  V + ++            + 
Sbjct: 122 ASLQQLRAVLKSVSGLQIDAIGSNIVLSGVV-----HRDMVAVIKSATQDMKNVIDTTTV 176

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
            +        A    V  KV I EV R+  +++G              + +   G     
Sbjct: 177 DEG------EALRKTVHFKVQIMEVTRNTQRKLGIAWDSAFRGPQIGGAASVASGAAKAV 230

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G       +   +  + ++          LA P L   SG +ASF +GGQ        
Sbjct: 231 TAGTSYFLAGIAS-NISSQINFAVNNGDAFILAAPELNTKSGGTASFLAGGQVPIPQS-G 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           + G T+V   DYGV L   P V + G I   + TE+S+    V+ G +P +  R   + +
Sbjct: 289 ALGTTNVMYKDYGVKLSINPVVDANGIISAHLTTEISQIDPTVSYGGLPGFLTRSTSSDI 348

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +G T+ ++GL+  D     +G+P L +IP++G LFR+  F  +++++ I  TP +  
Sbjct: 349 SMRTGETLAISGLISADSVNDSDGMPFLGQIPVIGQLFRSDSFRAKKSDLVIFVTPLISD 408

Query: 421 P--VAMRDLSRPDDHYSVE 437
           P      DL    D     
Sbjct: 409 PELAPNADLLTRADGIDRA 427


>gi|319943382|ref|ZP_08017664.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319743197|gb|EFV95602.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 434

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 95/412 (23%), Positives = 170/412 (41%), Gaps = 37/412 (8%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
               A+    + +       + I++ L +  +++V   V  + +             R +
Sbjct: 8   VGAAASVLRPSSTMTSTDAIETITLSLGQGHLMEVGQ-VLRIALGSGRVLQANWLDDRQL 66

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVV 146
            L  +  G+  + L    G       ++ E +   L   +   +  +S +R   + D ++
Sbjct: 67  LLIPEAPGETTLHLWLKGGGIRKYQILVTESNSVRLAQDMNLLLGENSGVRARALGDRIL 126

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEV 205
           L G   T + + RA EL + +               +V++L++  G +Q + L+V + E+
Sbjct: 127 LEGQNPTEEGAWRAAELVKRY--------------PQVISLVSRRGYEQMINLEVKMIEI 172

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------- 258
            R+ LKQ+G +    G+        +    G F   G      G      F         
Sbjct: 173 GRNALKQLGVRWQGGGAGDWAVSGPSFGVIGDFKRSGAFLPEGGAAATRGFAVAPRIHPF 232

Query: 259 ------------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                       ++  + +      LAEP L+  SG  A F +GG+     V S+ GA +
Sbjct: 233 ATSASMVSSLSSMIDLMVQNGDAAVLAEPRLSTRSGGKARFVAGGELPIP-VLSANGAAN 291

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V   +YGV     P V + G I   + TEVS     V    +P  R + ++T V L  G 
Sbjct: 292 VDFKEYGVRFEVEPVVNAQGVISASLHTEVSSIDDEVTVMGVPGLRKQSSNTDVNLRPGE 351

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T+V+AG++++++      IP L  +PILG LFR+ RF + E+E+ +  TP L
Sbjct: 352 TLVIAGMVRNEMSGAITKIPGLGDLPILGHLFRSKRFRQRESEMVVLITPRL 403


>gi|17549308|ref|NP_522648.1| outer membrane channel signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17431560|emb|CAD18238.1| probable pilus assembly, secretin cpac signal peptide protein
           [Ralstonia solanacearum GMI1000]
          Length = 454

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 91/414 (21%), Positives = 165/414 (39%), Gaps = 40/414 (9%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGKNVGQA 97
             +   + + +       +++   ++ + + +P  AD ++        ++ +  K  G A
Sbjct: 28  QGMPADQALHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGHGAAGSLLIIAKKPGAA 87

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           N+++    G  +     +                   +  + +   T VL G V+     
Sbjct: 88  NIMVWTQGGTALTYNVQVDAEPRGA-----------GSPDLAVQGSTAVLTGQVKD---- 132

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                L+    S +            V++   +A    V + V + E  + +LK+ GF  
Sbjct: 133 --VYSLARARKSAAAAGGAEPPKGGSVIDNTTMAVPGTVQVDVRVVEFSKTVLKEAGFIF 190

Query: 218 SITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           + T           +                    G  F++            L  +E  
Sbjct: 191 TRTRGGFTFGSFSPSSLTQYTVTPSSLTTQSTTPIGTAFNLLISSFSKGIFADLSLIESN 250

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G+ L  +PT+LS  
Sbjct: 251 GLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPTILSEN 309

Query: 327 RIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L++  E S+      + +N   +P+   R+ADTTVEL  G + V+ GL+        
Sbjct: 310 RIALKVAPEASDLDFSRGVTLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRTTLSNV 369

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           + +P L  +PI+G  F+   +N+EE E+ I  TP LV+P+A      P D    
Sbjct: 370 DKVPFLGDVPIIGTFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 420


>gi|283779187|ref|YP_003369942.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283437640|gb|ADB16082.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53
           +R  Q      ++ +  S  P +++    +        +   E     ++ +        
Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465

Query: 54  -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +++  +L             VD+    V D +  DVV  +PR + + GK+ G  +V   
Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525

Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
                 Q L   + +E D             L+  +     DS I + +V+  +++ G  
Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585

Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188
           +  +++ + + +                       +   +        ++ S  +V+N+L
Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247
            + G  QV LKV IAE+ R   +  G       S S   K  +          GG   ++
Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              +D    +  +  L++   ++ LAEPTL  +SG+ A+F +GG+    TV  S G  +V
Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765

Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           T     +G ++ F PTV+   RI L +  E S+    +N G  P  RVR A TTVE+  G
Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+ +AGLL+D++         +  +P L  +F      R ETE+ I  +P LV P+   
Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880

Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467
           ++   P    +   + + F                   R+ K YG    S   G    G
Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939


>gi|160897515|ref|YP_001563097.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
 gi|160363099|gb|ABX34712.1| type II and III secretion system protein [Delftia acidovorans
           SPH-1]
          Length = 492

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/473 (19%), Positives = 164/473 (34%), Gaps = 85/473 (17%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           LQR  +T+       + P     P        +      ++  G  + +   +  ++ + 
Sbjct: 14  LQRAVWTLCGSMALLALPPAVSAPADTAGVQGMHAPGAGDMPSGDSLQLVAGRQHLMPLA 73

Query: 64  VDVQDVLVSDPTKADVVVHSPR----------TMYLFGKNVGQANVILIGHDGKQMLNLD 113
                + V DP   DV +               + L  K  G   +++    G       
Sbjct: 74  STPGRIAVGDPNVLDVKLLRATPGSGAGAGGTELLLTPKAQGSTTLVVWPQKGGAPQRW- 132

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
                                   V++    ++L   + ++ +  +AV     +      
Sbjct: 133 -----------------------EVQVRGQHLLLEKRLTSVPEHAQAVAELRQYAPAQTL 169

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                    K          + V + V + E ++  +K+IG      G ++      +  
Sbjct: 170 LVDNAQIDVK---------SNTVQVDVQVVEFKKSAMKRIGVNIYSGGRNNQGFSFGSFS 220

Query: 234 FG-------------------------------------GKFVSEGGDFSVKGVLDRFSF 256
            G                                         +     +          
Sbjct: 221 PGVVGSISTNTNGTGTGTGTGNTGTGGTGSGGVSNNTSSAIASAMSLVMTFGKAFSGAGI 280

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
            T L  LE     R LA PTL A +GQ+ASF +GG+     V +  G  ++   ++G+ L
Sbjct: 281 VTQLSILEGNGMARVLARPTLLAQTGQNASFLAGGELPIP-VPARDGNIAIQYKEFGIKL 339

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
             TPT+LS  RI L++  E S+      + ++   +P+ R R+ADT+VEL  G + V+ G
Sbjct: 340 QLTPTILSDDRIALKVSPEASDLDFNSGVTISGVTVPAIRTRRADTSVELADGESFVIGG 399

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L+          +P+L  +PILG  F+N  + +EE+E+ I  TP LV P+   
Sbjct: 400 LVSRATTSNVSKVPVLGDLPILGTFFKNLNYTQEESELVIIVTPRLVHPLPAS 452


>gi|116052338|ref|YP_792649.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115587559|gb|ABJ13574.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 416

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                   G   +   +++++ N        QV   +   EV R  LKQ        G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
                +  +    K  ++G                +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +         ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 R 447
           R
Sbjct: 402 R 402


>gi|215433395|gb|ACJ66663.1| outer bacterial membrane secretin family protein [Myxococcus fulvus
           HW-1]
          Length = 482

 Score =  230 bits (586), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/439 (21%), Positives = 175/439 (39%), Gaps = 63/439 (14%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
              G  +S+G+    ++ +P  +  V + DP+ ADV       + + G+  G+  +++  
Sbjct: 25  AQDGTNVSLGVGSQKVITIPG-LSRVALGDPSIADVKTLGSGQLLITGQAEGKTTLLVWK 83

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G+++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R  +
Sbjct: 84  SSGQRVSYLVAVRKQDPNEVITEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143

Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180
           +   + +     + A ++                                          
Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203

Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     +KV NLL +  +  +  +V   E+RR+   + G ++    +    + S  
Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTASAI 260

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           A+   +         V  +    + +            R LA+P L   SG+ A F +GG
Sbjct: 261 ANISQELFPGTFGSGVSTLALNANSDFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
           +     +  +    +V    YGV+L+  PT    G I   I+ E SE    V      + 
Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSS 378

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P +R R+  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  
Sbjct: 379 SIPGFRTRRVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIVGELFKSRGFDST 438

Query: 407 ETEIFIAATPFLVKPVAMR 425
           + E+ I  TP +V P + +
Sbjct: 439 KRELVIFVTPRIVNPDSDK 457


>gi|207724789|ref|YP_002255186.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
 gi|206590014|emb|CAQ36975.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           MolK2]
          Length = 447

 Score =  230 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 93/431 (21%), Positives = 172/431 (39%), Gaps = 48/431 (11%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMY 88
            A    +    +  G  + +       +++   ++ + + +P  AD ++   R    ++ 
Sbjct: 4   AALAPGVHAQNMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLL 63

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           +  K  G A++++    G  +   ++ ++ +               +  + +   T VL 
Sbjct: 64  IVAKKPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLT 112

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G VR          L+    + +            +++   +A    V + V + E  + 
Sbjct: 113 GQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKT 166

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------------SEGGDFSVKG 249
           +LK+ GF  S T           +                               F++  
Sbjct: 167 VLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLTVQSTQPVSTAFNLLL 226

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L  +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++  
Sbjct: 227 SSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEY 285

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSG 365
             +G+ L  +PT+LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G
Sbjct: 286 KPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDG 345

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            + V+ GL+        + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A  
Sbjct: 346 ESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARN 405

Query: 426 DLSRPDDHYSV 436
               P D    
Sbjct: 406 A---PIDKMLP 413


>gi|313106823|ref|ZP_07793035.1| RcpA [Pseudomonas aeruginosa 39016]
 gi|310879537|gb|EFQ38131.1| RcpA [Pseudomonas aeruginosa 39016]
          Length = 416

 Score =  230 bits (585), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                   G   +   +++++ N        QV   +   EV R  LKQ        G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
                +  +    K  ++G                +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +         ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 R 447
           R
Sbjct: 402 R 402


>gi|283781350|ref|YP_003372105.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439803|gb|ADB18245.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 940

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 118/539 (21%), Positives = 209/539 (38%), Gaps = 77/539 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIG------- 53
           +R  Q      ++ +  S  P +++    +        +   E     ++ +        
Sbjct: 406 LRARQAAEARTLTPYSQSIAPVISRPGYAQPGQTRPAALVQPEPIGPARVDMIPEGSPFE 465

Query: 54  -LNKVIILQ----------VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
            +++  +L             VD+    V D +  DVV  +PR + + GK+ G  +V   
Sbjct: 466 VIDESGVLTVRVRRSRLLRTKVDIYRTAVVDESICDVVQFTPREVSIIGKSQGATHVTFW 525

Query: 103 -GHDGKQMLNLDILIERDIAH----------LEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
                 Q L   + +E D             L+  +     DS I + +V+  +++ G  
Sbjct: 526 FDDPNSQPLTWLVKVEPDAEEVKKEEQTYKLLQDVINEMFPDSKIELVVVASKLIVRGQA 585

Query: 152 RTIQDSQRAVEL-----------------------SETFLSQSGRNQYANSSSKKVMNLL 188
           +  +++ + + +                       +   +        ++ S  +V+N+L
Sbjct: 586 KDSEEAAQIISIIRAQTGGQGQNGLGGGQNGLGEGAAADVLSDSATGNSSRSRLQVINML 645

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SV 247
            + G  QV LKV IAE+ R   +  G       S S   K  +          GG   ++
Sbjct: 646 RVPGVHQVALKVKIAELNRTAARGFGVDLKTDISFSESEKGSSLLLESILNMAGGQAPAL 705

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              +D    +  +  L++   ++ LAEPTL  +SG+ A+F +GG+    TV  S G  +V
Sbjct: 706 LTQIDGDEIQIGIRYLQQHGVVKLLAEPTLVTLSGRPATFIAGGEFAVPTVVGSAGLNAV 765

Query: 308 T--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           T     +G ++ F PTV+   RI L +  E S+    +N G  P  RVR A TTVE+  G
Sbjct: 766 TTDFRAFGAIISFMPTVVDKDRIRLEVAPEFSQINQDLNVGGTPGLRVRAATTTVEMREG 825

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+ +AGLL+D++         +  +P L  +F      R ETE+ I  +P LV P+   
Sbjct: 826 QTLAIAGLLEDNMNGTT-----IGDLPFLAKIFGRRGMQRNETELLILVSPELVHPMEPE 880

Query: 426 DL-SRPDDHYSVEDDAKAFFFN----------------RVNKIYGPKEASEVEGQNYKG 467
           ++   P    +   + + F                   R+ K YG    S   G    G
Sbjct: 881 EVPPLPGFDVTEPTNGQFFLHGDLEGNPTQDYRSTVWPRLRKRYGSGGPSMTSGPFGHG 939


>gi|300697742|ref|YP_003748403.1| pilus assembly protein (cpaC) [Ralstonia solanacearum CFBP2957]
 gi|299074466|emb|CBJ54016.1| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           CFBP2957]
          Length = 462

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 91/419 (21%), Positives = 173/419 (41%), Gaps = 40/419 (9%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR----TMYLFGK 92
             +    + +G  + +       +++   ++ + + +P  AD ++   R    ++ +  K
Sbjct: 31  PGVHAQSMPEGPVVHLLSGSQREIRLGKPLERIAIGNPEVADALLLKGRGAAGSLLIVAK 90

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
             G A++++    G  +   ++ ++ +               +  + +   T VL G VR
Sbjct: 91  KPGAASIMVWTQGGTAI-TYNVQVDAEARGA----------GSPDLAVQGGTAVLTGQVR 139

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                     L+    + +            +++   +A    V + V + E  + +LK+
Sbjct: 140 D------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVPGTVQVDVRVVEFSKTVLKE 193

Query: 213 IGFQHSITGSSSGPSKSFAADFGG-----------KFVSEGGDFSVKGVLDRFSFETVLH 261
            GF  + T           +                  +    F++            L 
Sbjct: 194 AGFIFTRTRGGFTFGSFSPSSLTQYTVTPSSLSTQSTTAVSSAFNLLISSFSKGIFADLS 253

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            +E     R LAEP+L A+SGQSA+F +GG+     V  + G T++    +G+ L  +PT
Sbjct: 254 LIESNGLARVLAEPSLVALSGQSANFLAGGEIPIP-VPQALGTTTIEYKPFGIGLTVSPT 312

Query: 322 VLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +LS  RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+   
Sbjct: 313 ILSENRIALKVAPEASDLDFSRGITLNGATVPAIVTRRADTTVELGDGESFVIGGLVSRT 372

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                + +P L  +PI+G+ F+   +N+EE E+ I  TP LV+P+A      P D    
Sbjct: 373 TLSNVDKVPFLGDLPIIGSFFKRLNYNQEERELVIIVTPRLVRPMARNA---PIDKMLP 428


>gi|218893396|ref|YP_002442265.1| RcpA [Pseudomonas aeruginosa LESB58]
 gi|254239026|ref|ZP_04932349.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|296391003|ref|ZP_06880478.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PAb1]
 gi|126170957|gb|EAZ56468.1| hypothetical protein PACG_05203 [Pseudomonas aeruginosa C3719]
 gi|218773624|emb|CAW29438.1| RcpA [Pseudomonas aeruginosa LESB58]
          Length = 416

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                   G   +   +++++ N        QV   +   EV R  LKQ        G +
Sbjct: 117 -------RGAPAFTAGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
                +  +    K  ++G                +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +         ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 R 447
           R
Sbjct: 402 R 402


>gi|319788661|ref|YP_004148136.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317467173|gb|ADV28905.1| type II and III secretion system protein [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 502

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 89/406 (21%), Positives = 153/406 (37%), Gaps = 29/406 (7%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +         +++   +  + +VP  ++ V V D     V       +   G   G+ NV
Sbjct: 84  ASTAQPLADALTLHAGEAAVRRVPAALRRVAVGDGEILSVHTVGRNELVFIGTQPGETNV 143

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQ 158
            L   +G Q      +       +  T+R  + +  ++ V  V   VV+ G       S 
Sbjct: 144 HLWLGNGTQRTVAVNVTGSRSDGVAATVRELLGNHPDVAVRAVGSNVVISGGELDAATSA 203

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +   L + +                      +     V + VTI E  +D ++ +G +  
Sbjct: 204 KIAALQKLYPQVLNFAGSD-----------PVGMRPMVRMDVTIMEFNKDAVEDLGIRWD 252

Query: 219 ITGSSSGPSKSFAADFGGKF----------------VSEGGDFSVKGVLDRFSFETVLHA 262
            T S               F                +               +  + ++ 
Sbjct: 253 STISGPIGGLIRDVTTNDYFRVLPEDNRTFDEIREQLPTRLPGPQGYFGIATTIGSQINL 312

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L        LAEP L+A SG +A+F  GG+     + S  G T +   +YG+ L+ +P V
Sbjct: 313 LMSRGKAWVLAEPKLSARSGSNATFLVGGEVPIV-IPSVLGQTQIEYKEYGIRLNISPNV 371

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            S   +   I  EVS     V    +P +  R+A+T + + +G TIV++GLL  +  +  
Sbjct: 372 NSAREVATSIMAEVSRIDPSVAVQGVPGFLTRRAETEINVLAGQTIVISGLLDREAAKSV 431

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +  P+L  IPILG LFR+  F    TE+ I  TP +V P +  +L 
Sbjct: 432 DKFPILGDIPILGRLFRSDGFRGNRTELVIFVTPHIVTPDSPENLE 477


>gi|300694111|ref|YP_003750084.1| pilus assembly protein (cpac) [Ralstonia solanacearum PSI07]
 gi|299076148|emb|CBJ35461.2| putative pilus assembly protein (cpaC) [Ralstonia solanacearum
           PSI07]
          Length = 462

 Score =  229 bits (584), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 93/446 (20%), Positives = 172/446 (38%), Gaps = 48/446 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           ++              A    +    +   + + +       +++   ++ + + +P  A
Sbjct: 4   AAVVRGWMGALALGCAALAPGVHAQSMPADQALHLLSGSQREIRLGKPLERIAIGNPEVA 63

Query: 78  DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           D ++        ++ +  K  G AN+++    G  +     +                  
Sbjct: 64  DALLLKGHGAAGSLLIVAKKPGAANIMVWTQGGTAITYNVQVDAAPRGA----------- 112

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            +  + +   T VL G V+          L+    + +       S S  +++   IA  
Sbjct: 113 GSPDLAVQGATAVLTGQVKD------VYSLARARKAAAVAGGAEPSKSGSMVDNTTIAVP 166

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------- 240
             V + V + E  + +LK+ GF  S T           +       +             
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGSYSPSSLSQATPAWLSSTASSSSGLT 226

Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F++            L  +E     R LAEP+L A+SGQSA+F +GG+  
Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGIFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
              V  + G T++    +G+ L  +PT+LS  RI L++  E S+      I +N   +P+
Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+ADTTVEL  G + V+ GL+        + +P L  +P++G+ F+   +N+EE E+
Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKVPFLGDVPVIGSFFKRLDYNQEEREL 405

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
            I  TP LV+P+A      P D    
Sbjct: 406 VIIVTPHLVRPMARDA---PIDKMLP 428


>gi|167836794|ref|ZP_02463677.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 423

 Score =  229 bits (583), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 109/444 (24%), Positives = 170/444 (38%), Gaps = 40/444 (9%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--MYLFGKNVGQAN 98
             +  +   I +       + V   VQ V + DP  ADV+V       + L  K  G  +
Sbjct: 1   AAQAAEMGAIELTTGAQRQIAVGRGVQRVAIGDPNVADVLVIKGGRGGVLLVAKAAGSTS 60

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           +++      +     + +    A      R  +      V     T V+ G   T+    
Sbjct: 61  LMVWERGRDEPAVYTVDVVSGAA------RALLDGGAPGVRAYDGTAVVSGSAATLDAHA 114

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           RA+ + +    + G    A++   K +  +++             E  R +LKQ G    
Sbjct: 115 RALAVGKGMAGKGGGVVDASTVGGKNVVQVDVRVV----------EFSRSVLKQAGLNFF 164

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERA 266
              +         A             SV   +                    L  LE  
Sbjct: 165 KQNNGFTFGSFAPAGLASVTGGGTSSMSVSANIPIASAFNLVVGSATRGLFADLSILEAN 224

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LA+PTL A+SGQSASF +GG+     V  S G  S+    YGV L  TPTVLSP 
Sbjct: 225 NLARVLAQPTLVALSGQSASFLAGGEIPVP-VPQSLGTISIDWKPYGVGLTLTPTVLSPR 283

Query: 327 RIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L++  E S+      I +N   +P+   R+ADTTVEL  G + V+ GL+  +     
Sbjct: 284 RIALKVAPESSQLDFVHSITINGVTVPALTTRRADTTVELGDGESFVIGGLIDRETTSNV 343

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +P L  +PI+G  F++  + + + E+ I  TP LV P+A    S P    +   +   
Sbjct: 344 DKVPFLGDLPIIGTFFKHLSYQQNDKELVIIVTPHLVAPIAKNA-SLP----ATPGELSE 398

Query: 443 FFFNRVNKIYGPKEASEVEGQNYK 466
                V + Y     S   G  + 
Sbjct: 399 QRDGPVWRSYLGGALSPDAGPGFS 422


>gi|15599500|ref|NP_252994.1| RcpA [Pseudomonas aeruginosa PAO1]
 gi|254244885|ref|ZP_04938207.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
 gi|9950526|gb|AAG07692.1|AE004846_9 RcpA [Pseudomonas aeruginosa PAO1]
 gi|126198263|gb|EAZ62326.1| hypothetical protein PA2G_05758 [Pseudomonas aeruginosa 2192]
          Length = 416

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 171/421 (40%), Gaps = 71/421 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 36  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 96  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 116

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                   G   +   +++++ N        QV   +   EV R  LKQ        G +
Sbjct: 117 -------RGAPAFTVGAAEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 161

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
                +  +    K  ++G                +     + + ++ALE +    TLA 
Sbjct: 162 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 221

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 222 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 281

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 282 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 341

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +         ++ +F  
Sbjct: 342 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 401

Query: 447 R 447
           R
Sbjct: 402 R 402


>gi|115379230|ref|ZP_01466346.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|310822227|ref|YP_003954585.1| type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
 gi|115363762|gb|EAU62881.1| type II and III secretion system protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309395299|gb|ADO72758.1| Type II and III secretion system [Stigmatella aurantiaca DW4/3-1]
          Length = 485

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 103/476 (21%), Positives = 181/476 (38%), Gaps = 75/476 (15%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T FT  +  L      V     + +               G  I++G+    ++ VP  +
Sbjct: 3   TRFTHHAAVLGVLMALVLSGTALAQERD------------GSTIALGVGTQKVITVPG-I 49

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
             + + DP  A+V       + + G+  G+  +I+    G+++  L  +  +D   +   
Sbjct: 50  ARIALGDPNVAEVKNIGNNQVLIIGQTEGKTTLIIWKSSGQRVTFLIAVRRQDPNEIISE 109

Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS----- 180
           +++ + +   + V MV D + L G   T QD+ R  ++   + +     + A ++     
Sbjct: 110 IKKLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQVVSLYPNVKSFVKIAPNAKKLVA 169

Query: 181 ----------------------------------------------SKKVMNLLNIAGED 194
                                                          +KV NLL +  + 
Sbjct: 170 QNLNAAYQKAGLRNVQANVVGSTIFLEGSVESQQDLQKAELITKAIGEKVENLLVVGIKR 229

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            +  +V   E+RR+   + G ++    S S  + +  +       +     S    L   
Sbjct: 230 MILSEVQFVEIRRNSRDRYGIRYPTDISGSATASALISKELFPG-TFSSGVSSLQFLASA 288

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F     A       R LA+P L   SG+ A F +GGQ     +  +    +V    YGV
Sbjct: 289 DFAVGFQA--NDGYGRLLAQPKLVCASGEKAEFLAGGQVPIPLI--TNNQFTVEYKPYGV 344

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIV 369
           +L+  PT    G I   I+ E SE    V      +  +P +R RK  T V +  G TIV
Sbjct: 345 ILNLRPTADRSGNIQTEIEAEASEIDTSVAVSIGGSAAVPGFRTRKVKTNVTVRHGETIV 404

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L+G+   D Q+    +P L  IPI+G LF+N  F+  + E+ I  TP +V P + +
Sbjct: 405 LSGVFSHDEQKAVSKLPGLGHIPIIGELFKNRAFDSTKRELVIFVTPRIVNPDSDK 460


>gi|168703130|ref|ZP_02735407.1| putative outer membrane channel for pilus assembly CpaC [Gemmata
           obscuriglobus UQM 2246]
          Length = 577

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 109/488 (22%), Positives = 183/488 (37%), Gaps = 37/488 (7%)

Query: 2   RYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           R  +R     + + L  +  +     P     AA       ++ K   + + L  +    
Sbjct: 5   RTSRRFLPWALVVTLGLAAVTTGAGQPPDPKGAAPA-----DLDKSGAVVVPLGGLRSFD 59

Query: 62  VP----VDVQDVLVSDPTKADVVV--HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
                 V   D+L S           + P  + L GK  G + + ++  D    L  D++
Sbjct: 60  PKLKGGVPPTDILNSREDVLGARPDPNDPTKLLLTGKTAGLSQLTIVQKD-APPLKFDVV 118

Query: 116 IERDIAHLEMTLRRFIADSNIRVEM-VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           ++ D+A L   +R  +  +++ VE  + + +VL G V +  D+     L+ + +  +   
Sbjct: 119 VKPDLAQLRKLIRDTVPTASVTVEPGLGNVIVLSGYVTSPSDADIVQRLANSAVGGANA- 177

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                    V+N + I G  QV + V +A V R+ L+  GF  ++ G  S    S  +  
Sbjct: 178 --------NVINAVQIGGVQQVQIDVVVASVDRNQLRSRGFDFALPGRGSFSFSSLVSGL 229

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETV-------LHALERATAIRTLAEPTLTAISGQSASF 287
            G   + G   +       F F  V       L AL      + LAEP +   +G+ A F
Sbjct: 230 LGVQSAGGVTTATFSPDSNFQFAVVPNRFFGALRALRTEGVAKFLAEPRVVTQTGRPAFF 289

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GV 343
            +GGQ    + SS      VT   +G  L   P V   G I L I   ++         V
Sbjct: 290 RAGGQQAIISGSSGITGPGVTLQPFGTELTVVPIVYGNGMIWLDINPRITAVSQGLGITV 349

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P +  +   +TV L SG T  + GL+++ +      +P+L  +P  G  F     
Sbjct: 350 GGSSSPGFTEQSVQSTVLLESGQTFAIGGLIQNSVNASASKVPVLGDLPFAGTYFSRVEH 409

Query: 404 NREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
              E+E+ I  TP LV P+         P       DD + F  N +    G  +     
Sbjct: 410 TVRESELVILVTPRLVHPMDQCQGPKRLPGQETRSPDDYELFLENVLEVPRG--QRKVWN 467

Query: 462 GQNYKGAI 469
           G+ Y    
Sbjct: 468 GKCYNAPY 475


>gi|33593509|ref|NP_881153.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|33572865|emb|CAE42800.1| putative secretory apparatus [Bordetella pertussis Tohama I]
 gi|332382917|gb|AEE67764.1| putative secretory apparatus [Bordetella pertussis CS]
          Length = 470

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 94/427 (22%), Positives = 158/427 (37%), Gaps = 36/427 (8%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R +   M++ L                    +            + + + +  +L     
Sbjct: 12  RGWLPWMAVLLAGGTMLWTPGGRAAPPAQPAV------------LRMEVGETQVLAAAG- 58

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V  V V +       V     + LF +  G ++V +    G +      ++      L  
Sbjct: 59  VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118

Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +   +A     R   V   +V+ G   +  D  R   L++ +                 
Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
                +  +  V L V + E+ R  L+++G +           G+    S +  A   G 
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAVGGVHAGAVWNGSSAALAPPPGP 225

Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                      G+L         L AL +      LA+P L A SG +ASF +GG+  Y+
Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T       T++    YGV L  TP + + G +  RI+ E S     +     P+ R R+A
Sbjct: 286 TTDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404

Query: 417 FLVKPVA 423
            +V P  
Sbjct: 405 TIVSPSD 411


>gi|108762925|ref|YP_631309.1| outer membrane secretin family protein [Myxococcus xanthus DK 1622]
 gi|108466805|gb|ABF91990.1| protein transporter, outer bacterial membrane secretin (secretin)
           family [Myxococcus xanthus DK 1622]
          Length = 482

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 92/439 (20%), Positives = 174/439 (39%), Gaps = 63/439 (14%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
              G  +S+G+    ++ +P  +  V + DP+ A+V       + + G+  G+  +++  
Sbjct: 25  AQDGTTVSLGVGSQKVITIPG-LSRVALGDPSVAEVKTLGSGQLLITGQAEGKTTLLVWK 83

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             G+++  L  + ++D   +   ++R + +   + V MV D + L G   T QD+ R  +
Sbjct: 84  SSGQRVSYLVAVRKQDPNEVISEIKRLLGEIEGVSVRMVGDRIYLDGQAYTTQDADRIEQ 143

Query: 163 LSETFLSQSGRNQYANSS------------------------------------------ 180
           +   + +     + A ++                                          
Sbjct: 144 VVGLYPNVKSFVKIAPNAKKLVAQNLNAAFQKAGLKNVQANVVGATIFLEGSVESQQDLQ 203

Query: 181 ---------SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     +KV NLL +  +  +  +V   E+RR+   + G ++    +    + +  
Sbjct: 204 KAELITKAIGEKVENLLVVGIKRMILSEVQFVEIRRNSRDRYGIRYP---TDITGTATAI 260

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           A    +         V  +    + +            R LA+P L   SG+ A F +GG
Sbjct: 261 ASISQELFPGTFGSGVSTLTLNANADFSFGFQGNDGYGRLLAQPKLVCASGEKAEFLAGG 320

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAG 346
           +     +  +    +V    YGV+L+  PT    G I   I+ E SE    V      + 
Sbjct: 321 EVPIPLI--TNNQFTVEFKKYGVILNLRPTADRNGNIQTEIEAEASEIDTSVAVSFGGSA 378

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P +R RK  T V +  G TIVL+G+   D Q+    +P L  IPI+G LF++  F+  
Sbjct: 379 SIPGFRTRKVKTNVTVRHGETIVLSGVFSHDEQKSVSKLPGLGHIPIIGELFKSRGFDST 438

Query: 407 ETEIFIAATPFLVKPVAMR 425
           + E+ I  TP +V P + +
Sbjct: 439 KRELVIFVTPRIVNPDSDK 457


>gi|239817412|ref|YP_002946322.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
 gi|239803989|gb|ACS21056.1| type II and III secretion system protein [Variovorax paradoxus
           S110]
          Length = 457

 Score =  228 bits (581), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/444 (23%), Positives = 170/444 (38%), Gaps = 64/444 (14%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
            S+         A       A+A  +          + + +       L +   ++ + +
Sbjct: 21  FSLIALCVLALGAWPIATNAADATPVR-----PQPQRPLILNAGTQQELLIEKGIERMAI 75

Query: 72  SDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           +D   A + V           + + GK  G+  +++            I + R       
Sbjct: 76  ADEAVAAITVTRKGPNSPAARLIITGKAAGRTTLMIWEKGNSAATTYSIEVRRR------ 129

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
                             +  L G + ++   Q+A E +       G  + A    + V+
Sbjct: 130 ------------------SATLAGTMDSVAAHQQARETAMA-----GMPEKAELIDRSVV 166

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ-HSITGSSSGPSKSFAADFGGKFVSEGGD 244
           N+      + V ++V + E  R +LKQ G    S   +S+G S            +   +
Sbjct: 167 NV----RSNTVQVEVKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFGPSSLGSTTFASN 222

Query: 245 FSVKG--------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            S+ G                 +      +  LE     R LAEPTL A+SGQSASF +G
Sbjct: 223 GSISGEYHNPLAQAFSLLFNFGKAGVGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLAG 282

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AG 346
           G+          G TS+    +G+ L  TPTVLS  RI L++  E S+     +      
Sbjct: 283 GELPVP-APQGLGTTSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSIGGV 341

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+   R+ADTTVEL  G + ++ GL+        + +PLL  +PILG  FR +++   
Sbjct: 342 AVPAITTRRADTTVELGDGESFIIGGLVSRTTTSNVDKVPLLGDLPILGTFFRQNKYQMS 401

Query: 407 ETEIFIAATPFLVKPVAMRDLSRP 430
           E E+ I  TP LVKP+A      P
Sbjct: 402 EKELVILVTPHLVKPIARGTDLTP 425


>gi|330816715|ref|YP_004360420.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327369108|gb|AEA60464.1| Type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 477

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 118/493 (23%), Positives = 195/493 (39%), Gaps = 63/493 (12%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +V+ L     A+AA         G    + + +     +    ++Q V V DP 
Sbjct: 5   LIALAIAVSALALSSWASAA---------GPEAGVDLAVGAQRQIASGRNLQRVAVGDPA 55

Query: 76  KADVVVH-SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
            AD+++      + L GK+ G  NV+L      +     + +    A         + D+
Sbjct: 56  VADILIIKGGGGVMLIGKSAGTTNVMLWERGRSEPTVYTVHVTSGAA------HALLNDA 109

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA----------------- 177
             RV+   DT V+ G   T++  QRAV+++    +     Q +                 
Sbjct: 110 TPRVDTYGDTTVISGSANTLEAHQRAVDVANAAAAARAAAQQSSSAGGGQGKGQAVGRGG 169

Query: 178 --------NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                   +S+   V++   I+G + V + V + E  R  +KQ G     + +       
Sbjct: 170 GNGGGGGGDSAGPNVVDASTISGRNVVQVDVRVVEFSRSAIKQAGLNLFKSNNGFSFGSF 229

Query: 230 FAADFGGKFVSEGGDFSVKGVL------------DRFSFETVLHALERATAIRTLAEPTL 277
             +       +     +V  V                     L  LE+    R LA+PTL
Sbjct: 230 APSSLQSSSYNPSAGLTVTAVSPITSAFNLVVGSTSRGIAGNLSVLEQNNLARILAQPTL 289

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+SGQSASF +GG+     V  S G  S+    YG+ L  TPTVL P RI L++  E S
Sbjct: 290 VALSGQSASFLAGGEIPVP-VPQSLGTISIEYKPYGIGLTVTPTVLGPNRIALKVAPEAS 348

Query: 338 EPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +      I +N+  +P+   R+ADTTVEL  G + V+ GL+  +       +P L  +PI
Sbjct: 349 QLDFLNAITINSITVPALTTRRADTTVELGDGESYVIGGLVDRETTSNVSKVPFLGDLPI 408

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
           +GA F++  + + + E+    TP LV P+A    S P    S   +        V + + 
Sbjct: 409 IGAFFKSLNYQQNDKELVFVVTPHLVSPIAAGA-SLP----STPGEQSEQRDGPVWRSFL 463

Query: 454 PKEASEVEGQNYK 466
                      + 
Sbjct: 464 GGILVPDAAPGFS 476


>gi|107100112|ref|ZP_01364030.1| hypothetical protein PaerPA_01001133 [Pseudomonas aeruginosa PACS2]
          Length = 408

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/421 (22%), Positives = 170/421 (40%), Gaps = 71/421 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           + +  ++ +   +   L++ V ++ + + DP  ADV +   R   + GK  G  ++++  
Sbjct: 28  LAQAPRVDVVQGQQRDLRLAVPIERLAIGDPKIADVQLLDRRGFLVTGKEQGSTSLLIWT 87

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
               + L   + +E                               G V T          
Sbjct: 88  GCSPEPLRSLVEVEG-----------------------------RGSVDT---------- 108

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                   G   +   + +++ N        QV   +   EV R  LKQ        G +
Sbjct: 109 -------RGAPAFTVGAVEELPN--------QVQTDIRFVEVSRSKLKQASTSFVRRGGN 153

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKG---------VLDRFSFETVLHALERATAIRTLAE 274
                +  +    K  ++G                +     + + ++ALE +    TLA 
Sbjct: 154 LWVLGAPGSLGDIKVNADGSGLGGTFGTGSSGFNLIFGGGKWLSFMNALEGSGFAYTLAR 213

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      + +    ++   ++G+ L  TPTV++  RI L++  
Sbjct: 214 PSLVAMSGQSASFLAGGEFPIPVPNGTNDNVTIEYKEFGIRLTLTPTVMNNRRIALKVAP 273

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE      I      +P+ RVR+ DT+V L  G + V++GL   +     +  P L  
Sbjct: 274 EVSELDYSAGIQSGGVAVPALRVRRTDTSVMLADGESFVISGLTSSNSVSNVDKFPWLGD 333

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+++ ++++ E+ +  TP LV+P+A        P +         ++ +F  
Sbjct: 334 IPILGAFFRSTKLDKDDRELLMIVTPHLVQPLAADAQLPDLPGEGLRHYDPGFSRLYFLE 393

Query: 447 R 447
           R
Sbjct: 394 R 394


>gi|91777217|ref|YP_552425.1| putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
 gi|91689877|gb|ABE33075.1| Putative type II and III secretion system outermembrane protein,
           secretin [Burkholderia xenovorans LB400]
          Length = 595

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 88/443 (19%), Positives = 171/443 (38%), Gaps = 19/443 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            +R   +++   L       A     + A+AA    +D      + + +   +V IL +P
Sbjct: 11  RRRVLPSVLVGMLLCEAAPAALAQTAQAAHAAYTAATDSPSASTRVLEMFRGEVRILHIP 70

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             ++ + + +       V    ++ L G+  G  ++++    G  +     + + ++   
Sbjct: 71  GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 129

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              LR  +   + +R++ +   +VL G++      +      +    +        +  +
Sbjct: 130 LEQLRAVLRSVAGLRIDAIGSNIVLSGVI-----HRDMAGTVKAATQEMKNVVDTTTFDE 184

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                   A    V  KV I EV R   + +G              + +   G       
Sbjct: 185 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFRGPQIGGAASVATGAAKAITA 238

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G       +   +  + ++          LA P L   SG +ASF +GGQ        + 
Sbjct: 239 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 296

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G TS+   DYG+ L   P V +   I   + TE+S+    V    MP +  R   + + +
Sbjct: 297 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 356

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T+ ++GL+  D      G+P LS++PI+G LFR+ RF  +++++ I  TP +  P 
Sbjct: 357 RAGETLAISGLVSADAANDSNGMPFLSQVPIIGQLFRSDRFRAKKSDLVIFVTPVISDP- 415

Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
              +LS   D  +  D     F 
Sbjct: 416 ---ELSPNTDLLARADKLDENFR 435


>gi|319779649|ref|YP_004130562.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
 gi|317109673|gb|ADU92419.1| Type II/IV secretion system secretin RcpA/CpaC [Taylorella
           equigenitalis MCE9]
          Length = 508

 Score =  228 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 167/396 (42%), Gaps = 30/396 (7%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K I + + ++ +L     +  V V +    +      + + LFG + G   + 
Sbjct: 27  AQTTNTPKAIKMEIGQIEVLNF-QSIGRVAVGNSKLLNATTSDDKELVLFGLSEGFTTLQ 85

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQR 159
           +    G       ++   +   L   ++R +    N++  +++D V++ G   +  D ++
Sbjct: 86  VWDKGGSSSSYRVVIESANQNKLLKDIQRILNKIPNVKTSVIADKVIVEGDKLSDFDREK 145

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            V+L++ +              + +     +  ++ + + V I E+ R  ++Q+G +   
Sbjct: 146 VVQLTKHY-------------PQIIDMSSQVGWDEMLMIDVQIVELPRQFVQQLGLRWGT 192

Query: 220 T------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
           T            GS++  + ++ ++     V   G  +        +      ++A+  
Sbjct: 193 TAEGGVQIGATLEGSTAKKAFAYQSNLLANSVGNAGAIANPAFFGGINAFLNASINAMAV 252

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 LA+P LTA +G +A F +GG+  Y  V     A +V    YGV L+ TP +   
Sbjct: 253 EGQAVVLAQPQLTARNGTTAEFLAGGEVPYSMVDDKGQAQTV-FKPYGVSLNITPRIQRD 311

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G +  +I  EVS     +N    P+ + R+  T     SG  IV++G +  D  Q    +
Sbjct: 312 GTVRSKINVEVSTVDTSMNLNGGPALKTRRTSTEFNTKSGEPIVISGFISRDQMQSMTKV 371

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           P +++ PILG LF++  F   ETE+ I   P++VKP
Sbjct: 372 PGIAETPILGELFKSRNFQNNETELVIIVRPYVVKP 407


>gi|190574779|ref|YP_001972624.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
 gi|190012701|emb|CAQ46329.1| putative exported fimbriae assembly protein [Stenotrophomonas
           maltophilia K279a]
          Length = 451

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 104/436 (23%), Positives = 176/436 (40%), Gaps = 43/436 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104
               + +   +     +P D++ V ++DP  AD+V+    R   L GK  G   ++L   
Sbjct: 30  AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 89

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVEL 163
              +   L + ++  +             SN  V    D   +L G   ++    +  + 
Sbjct: 90  KQAEPQRLQVRVQSAVQGAADA------GSNGLVFTQQDNQGLLQGSTDSVLSHMQEQKT 143

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +   L + G    A++ S   +  + +   +            +  LKQIG        S
Sbjct: 144 AAMALGKDGLLADASTVSSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGS 193

Query: 224 SGPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERA 266
                +                                F +     +  +   +  L+  
Sbjct: 194 FAYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSN 253

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              R LAEPTL A+SGQSASF +GG+          G T++T   +G+ L  TPTVL+P 
Sbjct: 254 GMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPN 312

Query: 327 RIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           RI L++  E S+         N   +PS   R+ADTTVEL  G + V+ GL+  ++    
Sbjct: 313 RIALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSNV 372

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--D 439
             IPLL  +PI+G+ FRN  + R++ E+ I  TP LV+P+A   +L  P +  +     +
Sbjct: 373 GKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGEREAKPHMPE 432

Query: 440 AKAFFFNRVNKIYGPK 455
             A+    +++   P 
Sbjct: 433 WGAWLLGPISQDPVPG 448


>gi|83747917|ref|ZP_00944949.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|207739458|ref|YP_002257851.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
 gi|83725450|gb|EAP72596.1| GspD-related protein; CpaC2 [Ralstonia solanacearum UW551]
 gi|206592834|emb|CAQ59740.1| pilus assembly protein, secretin cpac [Ralstonia solanacearum
           IPO1609]
          Length = 462

 Score =  227 bits (578), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 174/446 (39%), Gaps = 48/446 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           ++              A    +    +  G  + +       +++   ++ + + +P  A
Sbjct: 4   AAVVRGWMGALALGCAALAPGVHAQSMPDGPVLHLLSGSQREIRLGKPLERIAIGNPEVA 63

Query: 78  DVVVHSPR----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           D ++   R    ++ +  K  G A++++    G  +   ++ +E +              
Sbjct: 64  DALLLKGRGAAGSLLIVAKKPGAASIMVWTQGGTAI-TYNVQVEAEARGA---------- 112

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            +  + +   T VL G VR          L+    + +            +++   +A  
Sbjct: 113 GSPDLAVQGGTAVLTGQVRD------VYSLARARKAAAAAGGAEPPKGGSMIDNTAMAVP 166

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-------------- 239
             V + V + E  + +LK+ GF  S T           +                     
Sbjct: 167 GTVQVDVRVVEFSKTVLKEAGFSFSRTRGGFTFGAYSPSSLSQATPSWLSSTASSSSGLT 226

Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F++            L  +E     R LAEP+L A+SGQSA+F +GG+  
Sbjct: 227 VQSTQPVSTAFNLLLSSVSKGLFADLSLIESNGLARVLAEPSLVALSGQSANFLAGGEIP 286

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPS 350
              V  + G T++    +G+ L  +PT+LS  RI L++  E S+      I +N   +P+
Sbjct: 287 IP-VPQALGTTTIEYKPFGIGLTVSPTILSENRIALKVAPEASDLDFSRGITLNGATVPA 345

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+ADTTVEL  G + V+ GL+        + +P L  +PI+G+ F+   +N+EE E+
Sbjct: 346 IVTRRADTTVELGDGESFVIGGLVSRTTLSNVDKLPFLGDLPIIGSFFKRLNYNQEEREL 405

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
            I  TP LV+P+A      P D    
Sbjct: 406 VIIVTPRLVRPMARNA---PIDKMLP 428


>gi|311107631|ref|YP_003980484.1| type II and III secretion system family protein 2 [Achromobacter
           xylosoxidans A8]
 gi|310762320|gb|ADP17769.1| bacterial type II and III secretion system family protein 2
           [Achromobacter xylosoxidans A8]
          Length = 453

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/478 (21%), Positives = 186/478 (38%), Gaps = 41/478 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  QRT        +     + A +     + A     +       + IS+ +     L
Sbjct: 1   MKKHQRT-------TMICLLSAAAAMTLGGLSLAQTAAPAAGANAPVRDISMAVKGQQSL 53

Query: 61  QVPVDV-QDVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDI 114
            +       + + DP  ADV V         ++ L+GK  G   + +   +       ++
Sbjct: 54  VLDGGAPARIAIGDPDVADVKVLPATGKRAASVLLYGKKPGTTQLQIWTGNNAAPQIWNV 113

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            +      ++  L          V++     V+ G   +      +  ++ + +      
Sbjct: 114 RVG---GSVQGALASRGLGGGANVDIADGHAVVSGHAESQLGQIASATMAASAVGGEKNV 170

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
              +++    +  + +   +          V R ++K  G   + +        S     
Sbjct: 171 VDMSTAGTGGVVQVEVKVVE----------VSRSVMKAAGISFTASNGPWSGGSSTMPAS 220

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G  ++ G         D  +F   L  L+     R LAEPTL A++GQSASF +GG+  
Sbjct: 221 LGGALASG----FSLFYDSNNFSARLRLLQTNGMARVLAEPTLVALTGQSASFLAGGELP 276

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NA 345
                   G  +VT   +G+ L  TPTVLS  RI L++  E SE               +
Sbjct: 277 IPQA-GGLGTVNVTFKPFGIGLTVTPTVLSRDRISLKVAPEASELDYTNGIAINTSADTS 335

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+ R R+ADTTVEL  G + V++GL+    + +   +P+L  +PI+G+ FR+  +++
Sbjct: 336 TIIPALRTRRADTTVELGDGESFVISGLVSRQTKAMVNKVPMLGDLPIIGSFFRSVDYSQ 395

Query: 406 EETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           E+TE+ I  TP LV+P+A    L  P       D A   +   +    G ++      
Sbjct: 396 EDTELVIVVTPRLVRPIARGVALPLPGAKQEQTDTAFNAWGYYLTGPMGGQQMPGFSR 453


>gi|33596527|ref|NP_884170.1| putative secretory apparatus [Bordetella parapertussis 12822]
 gi|33566296|emb|CAE37209.1| putative secretory apparatus [Bordetella parapertussis]
          Length = 470

 Score =  226 bits (577), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 91/427 (21%), Positives = 156/427 (36%), Gaps = 36/427 (8%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R +   M++ L   +                +            + + + +  +L     
Sbjct: 12  RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V  V V +       V     + LF +  G ++V +    G +      ++      L  
Sbjct: 59  VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118

Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +   +A         V   +V+ G   +  D  R   L++ +                 
Sbjct: 119 EVAALLARIPRAHSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
                +  +  V L V + E+ R  L+++G +           G+      +  A   G 
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225

Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                      G+L         L AL +      LA+P L A SG +ASF +GG+  Y+
Sbjct: 226 LAGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                   T++    YGV L  TP + + G +  RI+ E S     +     P+ R R+A
Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404

Query: 417 FLVKPVA 423
            +V P  
Sbjct: 405 TIVSPSD 411


>gi|33601080|ref|NP_888640.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
 gi|33575515|emb|CAE32593.1| putative secretory apparatus [Bordetella bronchiseptica RB50]
          Length = 470

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 92/427 (21%), Positives = 157/427 (36%), Gaps = 36/427 (8%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R +   M++ L   +                +            + + + +  +L     
Sbjct: 12  RGWLPWMAVLLAGGSMLWTPGGRAASPAQPAV------------LRMEVGETQVLAAAG- 58

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           V  V V +       V     + LF +  G ++V +    G +      ++      L  
Sbjct: 59  VTRVAVGNGQVLSATVVDGAEVALFARQPGTSSVHIWSGRGARQAYAVEVLPAGRRRLRE 118

Query: 126 TLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +   +A     R   V   +V+ G   +  D  R   L++ +                 
Sbjct: 119 EVAALLARIPRARSSAVGAHIVIEGSQLSEDDHARIAALAQRYPEVLDFTG--------- 169

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGK 237
                +  +  V L V + E+ R  L+++G +           G+      +  A   G 
Sbjct: 170 ----RVGWDRMVLLDVQVVELPRQSLRELGLRWDEPAAGGVHAGAVWNGGSAALAPPPGP 225

Query: 238 FVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                      G+L         L AL +      LA+P L A SG +ASF +GG+  Y+
Sbjct: 226 LSGAAAVRHAGGLLGVNALLSARLSALAQRGEAVLLAQPQLLARSGATASFQAGGELPYR 285

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
                   T++    YGV L  TP + + G +  RI+ E S     +     P+ R R+A
Sbjct: 286 ATDKEGNGTTL-FKPYGVSLQITPRIDADGAVHARIEVEASSVDPTLALAAGPALRKRRA 344

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   + SG T+VL G L  +    ++G+P LS++P++GALF   R    ETE+ I  TP
Sbjct: 345 VTEFNVHSGQTLVLGGFLSRERSHEEKGLPWLSELPLIGALFGARRAALRETELAIFVTP 404

Query: 417 FLVKPVA 423
            +V P  
Sbjct: 405 TIVSPSD 411


>gi|149927033|ref|ZP_01915291.1| type II/III secretion system protein [Limnobacter sp. MED105]
 gi|149824254|gb|EDM83474.1| type II/III secretion system protein [Limnobacter sp. MED105]
          Length = 473

 Score =  226 bits (576), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 176/438 (40%), Gaps = 46/438 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            + ++   +A    I    A     +         +++      ++ +P     V + DP
Sbjct: 10  SVVAAISLIACAGLISPQVAVGQTPAAPSSAAPFVLTLSTGFQKVISLPGIPARVSIGDP 69

Query: 75  TKADVVVHSPR-------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           T A V V  P         + + G   G  ++++          + + +    A    TL
Sbjct: 70  TIASVTVLKPTDRGGKNAGVLVTGLKTGSTSLLIWDRGASMARVITVSVTGKAAETISTL 129

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           +      ++ +E     + L G    +   Q+A E        S     ++    ++++ 
Sbjct: 130 K------DLNLETEGQVLKLSGSTPNVSTYQQARE--------SLIKPGSDGKPAELIDQ 175

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEG 242
             I     V + V + E  R  L+++G   +   +  G + S       +  GG   +  
Sbjct: 176 ATIQTSGTVQVDVKVVEFTRSELQRLGINLTGQVNGGGFTYSIAGPASVSGSGGVSNAFS 235

Query: 243 GDFSVKGVLDRFSFETV---------------LHALERATAIRTLAEPTLTAISGQSASF 287
             F+  G +       +               L+ L+     + LAEP+L A SGQ ASF
Sbjct: 236 LAFNGAGCVGEAVIGALNPTPVGPRTCDLVSGLNILQADGYAKVLAEPSLIAQSGQDASF 295

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343
            +GG+     V S  G   +    +GV L FTPT+LS   I LR+  EVS+        +
Sbjct: 296 LAGGEIPIP-VPSGNGTIGIEYKKFGVGLSFTPTILSNKTIALRVSPEVSDLDFSRGTSI 354

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P+   R+A TTVEL    + V+ GL+  +I      +P LS+IPILGA F+ + +
Sbjct: 355 QGVLVPAILTRRASTTVELGENQSFVIGGLISRNIIANANRVPWLSEIPILGAFFKGNTY 414

Query: 404 NREETEIFIAATPFLVKP 421
           +RE+ E+ I  TP  VKP
Sbjct: 415 SREDKELLIIVTPRFVKP 432


>gi|194366097|ref|YP_002028707.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
 gi|194348901|gb|ACF52024.1| type II and III secretion system protein [Stenotrophomonas
           maltophilia R551-3]
          Length = 452

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 99/430 (23%), Positives = 172/430 (40%), Gaps = 41/430 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGH 104
               + +   +     +P D++ V ++DP  AD+V+    R   L GK  G   ++L   
Sbjct: 31  AADDLVLQAREQRPWTLPADLERVAIADPGVADIVMLRGQRQALLVGKAPGTTTLLLWHR 90

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
              +   + + ++  +     T         +      +  +L G   ++    +    +
Sbjct: 91  KQAEPQRMQVRVQSAVQGAADT-----GSGGLVFTQQDNQGLLQGSTDSVLSHMQEQRTA 145

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              L + G     ++ S   +  + +   +            +  LKQIG        + 
Sbjct: 146 AMALGKDGTLADTSTISSGGVVQVEVKVVE----------FNKTALKQIGISFQNRNGNF 195

Query: 225 GPSKSFAADFGGKFVSE-----------------GGDFSVKGVLDRFSFETVLHALERAT 267
               +                                F +     +  +   +  L+   
Sbjct: 196 AYGFARPGGQLPGNTGILPGMKEGNSGNEAESPISSAFRLVFGSTKGLWNADVDLLQSNG 255

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R LAEPTL A+SGQSASF +GG+          G T++T   +G+ L  TPTVL+P R
Sbjct: 256 MARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLTVTPTVLAPNR 314

Query: 328 IGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           I L++  E S+         N   +PS   R+ADTTVEL  G + V+ GL+  ++     
Sbjct: 315 IALKVAPEASDLDYSNAIALNGVQIPSITTRRADTTVELGDGESFVIGGLVSSNVVSSVG 374

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVED--DA 440
            IPLL  +PI+G+ FRN  + R++ E+ I  TP LVKP+A   +L  P D  +     + 
Sbjct: 375 KIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVKPLARNTELPLPGDREAKPHMPEW 434

Query: 441 KAFFFNRVNK 450
            A+    +++
Sbjct: 435 GAWLLGPISQ 444


>gi|187921506|ref|YP_001890538.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
 gi|187719944|gb|ACD21167.1| type II and III secretion system protein [Burkholderia phytofirmans
           PsJN]
          Length = 561

 Score =  225 bits (574), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 87/443 (19%), Positives = 163/443 (36%), Gaps = 25/443 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            +R   +++   L           P   A               + + +   +V IL VP
Sbjct: 11  RRRVMPSVLIGMLLCEA------APAALAQVGYSAAMASPSASTRVLEMFRGEVRILHVP 64

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             ++ + + +       V    ++ L G+  G  ++++    G  +     + + +++  
Sbjct: 65  GTIKRIAIGNGKLVTANVVDG-SLMLLGERDGITSLVVWNEKGIALQTTVRIAKAEVSAS 123

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              LR  +   S + ++ +   +VL G++      +    + +                +
Sbjct: 124 VEQLRAVLQSVSGLHIDAIGSNIVLSGVI-----HRDMTGIVKAATQDMQNVIDTTKVDE 178

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                   A    V  KV I EV R   + +G              + +   G       
Sbjct: 179 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 232

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G       +   +  + ++          LA P L   SG +ASF +GG         + 
Sbjct: 233 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGTVPIPQS-GAL 290

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G TSV   DYG+ L   P V +   I   + TE+S+    V  G MP +  R   + + +
Sbjct: 291 GTTSVEYRDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYGGMPGFLTRNTTSDISM 350

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T+ ++GL+  D      G+P LSK+PI+G LFR+  F  +++++ I  TP +  P 
Sbjct: 351 RAGETLAISGLVSADAANDTTGMPFLSKVPIIGQLFRSDAFRAKKSDLVIFVTPVISDP- 409

Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
              +LS   D  +  D     F 
Sbjct: 410 ---ELSPNADLLARADRLDKSFR 429


>gi|127511579|ref|YP_001092776.1| type II and III secretion system protein [Shewanella loihica PV-4]
 gi|126636874|gb|ABO22517.1| type II and III secretion system protein [Shewanella loihica PV-4]
          Length = 436

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 88/406 (21%), Positives = 166/406 (40%), Gaps = 32/406 (7%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           ++  +       + + + +   + L    +V+ ++V +       V   + + L G+  G
Sbjct: 14  LLLPASSMAHNNRPMKLYVG-AVELYKAANVERIVVGNGKVLSAKVVDNKGVLLIGEAPG 72

Query: 96  QANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
             ++ L   DGK +  +L +  +  +    M  +   A  ++ V      +++ G    +
Sbjct: 73  NTDLQLWQKDGKLIKLSLTVTPDNSLRTTTMVKKMLAAFPSLTVSESDGLIIVQGEA-DL 131

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
              ++  ++ E   +     +Y   +               V ++V I E  +  L  +G
Sbjct: 132 AQKEQLEKILEGDPNVVSLVKYLKFAK---------TMSPMVKMQVKIVEFNKSTLNNVG 182

Query: 215 FQH--SITGSSSGPSKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFS 255
            +   S+ G + G +K F A+      S G                        +     
Sbjct: 183 IKWETSMAGPAYGVAKGFTANPIFNVASPGQYTEAITKSITENIGVLDTRGWSSLGIVSG 242

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             + +  L      R LA+P LT  SG+SASF +GG+   ++V S  GA  V   +YG+ 
Sbjct: 243 IGSQIQLLSEKGDARLLAQPNLTTRSGESASFLAGGEFPIRSV-SGLGAVDVEYKEYGIK 301

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P V     I  R+  EVS     V    +P    R+ ++ + + +  TIV++GL+ 
Sbjct: 302 LDIEPVVDEQQNIVSRVMAEVSSIDPSVAVDGVPGMLTRRTESVINVKNNETIVISGLVN 361

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            ++ ++    PLL  IPILG LF++  F  ++TE+ I  TP +V P
Sbjct: 362 SEMSKIVNKFPLLGDIPILGELFKSRDFKDDKTELVIFVTPVVVYP 407


>gi|229588195|ref|YP_002870314.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
 gi|229360061|emb|CAY46915.1| putative type II secretion system protein [Pseudomonas fluorescens
           SBW25]
          Length = 405

 Score =  225 bits (574), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 106/452 (23%), Positives = 175/452 (38%), Gaps = 73/452 (16%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKI-------SIGLNKVIILQVPVDVQDVLVS 72
            P    +      ++  + ++    G    +        +G      LQ PV +  + + 
Sbjct: 6   APLFMHMAWALMLSSLPVGMALAAPGNCSALGQLPAVVEVGEGLQQELQSPVAITRLAIG 65

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           DP  ADV V+  R   L G   G  ++++                        T R+ + 
Sbjct: 66  DPKIADVRVNGDRHFLLTGVASGATSLMVW------------------TACASTPRQSM- 106

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
                       V + G   +                    +   + S   ++       
Sbjct: 107 ------------VFVKGRATSAL-----------------TSLSLSPSEDPLL------- 130

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVL 251
             QV   +   EV R  LK+   +   TG +    S +  +   G F       S     
Sbjct: 131 PSQVQTDIRFVEVSRTKLKEASTRLLGTGKNFFLGSPNLLSPSEGVFKLPVSTDSFNVGF 190

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  +++ALER+    TLA P+L A+SGQSASF +GG+      S+ +   S+   +
Sbjct: 191 GGGRVSAMINALERSGFAYTLARPSLVAMSGQSASFLAGGEVPVPVPSAGSDTISIEYKE 250

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGT 367
           +G+ L  TPTV+   RI L++  EVSE        +    +P+  VR+ DT+V L  G +
Sbjct: 251 FGIRLTLTPTVIDRNRITLKVAPEVSELDYSNAVIIQGIQVPALTVRRTDTSVSLADGES 310

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            V++GL+  + +      P L  IPILGA FR+S  +REE E+ +  TP LV+P+A    
Sbjct: 311 FVISGLISTNNRSTISKFPGLGDIPILGAFFRDSNISREEKELLMIVTPHLVQPLAANAQ 370

Query: 428 --SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
             S P +       +  + FF      ++  G
Sbjct: 371 LPSLPGEKLRSYDPNWFRLFFLENGNFDRRSG 402


>gi|238027562|ref|YP_002911793.1| type II and III secretion system protein [Burkholderia glumae BGR1]
 gi|237876756|gb|ACR29089.1| Type II and III secretion system protein [Burkholderia glumae BGR1]
          Length = 476

 Score =  225 bits (573), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 110/492 (22%), Positives = 190/492 (38%), Gaps = 62/492 (12%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +++ +     ANAA ++           + + +     +     +Q V + DP 
Sbjct: 5   LIALAMAMSAVMASAVANAAGLDAG---------VDLAVGAQRQIATGRSLQRVAIGDPA 55

Query: 76  KADVVVHSPRT--MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
            ADV+V       + L GK+ G  NV+L      +     + +    A      +  +  
Sbjct: 56  VADVLVVKGNGGGVLLIGKSAGTTNVMLWERGRSEPDVYPVHVTSGAA------KALLGP 109

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------ 181
              RV+   DT V+ G   T++  QRAV+++    +     Q     +            
Sbjct: 110 DTPRVDTYGDTTVIAGSATTLEAHQRAVDVANAAAAARAAAQAGGGGAAAAAGVGGKTAG 169

Query: 182 -----------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                        V++   I+G + V + V + E  R  +KQ G     + +        
Sbjct: 170 AGGMGGAGGAAPSVVDASTISGRNVVQVDVRVVEFSRSAVKQAGLNFFKSSNGFAFGSFA 229

Query: 231 AADFG------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +                        F++          + L  LE+    R LA+PTL 
Sbjct: 230 PSSLSSLGSSATSGLAVTAAQPIASAFNLVVGSASRGISSNLSILEQNNLARILAQPTLV 289

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A+SGQSA+F +GG+     V  + G  S+    YG+ L   PTVL P RI L++  E S+
Sbjct: 290 ALSGQSANFLAGGEIPVP-VPQALGTVSIEWKPYGIGLTVAPTVLGPNRIALKVAPEASQ 348

Query: 339 PV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                 I +N   +P+   R+ADTTVEL  G + V+ GL+  +       +P L  +PI+
Sbjct: 349 LDFVNAITINGVTVPALTTRRADTTVELGDGESYVIGGLVDRETTSNLSKVPFLGDLPII 408

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           GA F++  + + + E+ I  TP LV P+A    + P    +   +        V + +  
Sbjct: 409 GAFFKSLSYQQNDKELVIIVTPHLVSPIAAGT-TLP----AAPGELSEQRDGPVWRSFLG 463

Query: 455 KEASEVEGQNYK 466
                     + 
Sbjct: 464 GMLVPDAAPGFS 475


>gi|319795779|ref|YP_004157419.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598242|gb|ADU39308.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 462

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 107/466 (22%), Positives = 178/466 (38%), Gaps = 64/466 (13%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
            P I  A +   N +         + +G      L +   +  + ++D T A V +    
Sbjct: 35  APGIWPAASVAANATPPPRQSQIPLVVGAGTQQELLIQKGIDRLAIADETVAGVTITRKT 94

Query: 86  ------TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
                  + + GK  G+  +++            + + R  +                  
Sbjct: 95  PNSPAARLIITGKTAGRTTLMVWEKGSASATTYALEVRRRAS------------------ 136

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
                  L G + ++ + Q+A + +       G         + ++N+      + V ++
Sbjct: 137 ------TLTGTLDSMVEHQQARDAASA-----GAGDKTPLVDRSIVNV----RSNTVQVE 181

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------GGD 244
           V + E  R +LKQ G     T ++S           G   S                   
Sbjct: 182 VKVVEFNRSVLKQAGLNIFSTRANSNGFSFGVFSPAGLKSSTFASDGSINGEYNNPLAQA 241

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           FS+     +      +  LE     R LAEPTL A+SGQSASF SGG+     V    G 
Sbjct: 242 FSLLFNFGKAGIGLNVGFLEGNGMARVLAEPTLVAMSGQSASFLSGGELPVP-VPQGLGT 300

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTV 360
           TS+    +G+ L  TPTVLS  RI L++  E S+      + +N   +P+   R+ADTTV
Sbjct: 301 TSIEYKPFGIGLTLTPTVLSNDRIVLKVAPEASDLDYTNSLSINGIAVPAISTRRADTTV 360

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G + ++ GL+        + +PLL  +PILG+ F+ +++   E E+ I  TP LVK
Sbjct: 361 ELGDGESFIIGGLVSRTTTSNADKVPLLGDLPILGSFFKQNKYQMSEKELVILVTPHLVK 420

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           P+A      P   Y      +      V + Y    A+      + 
Sbjct: 421 PIARGTDLAP---YLPGTAEQR--DGAVWRSYFLGGAAGTAVPGFS 461


>gi|187478776|ref|YP_786800.1| pilus assembly protein [Bordetella avium 197N]
 gi|115423362|emb|CAJ49896.1| putative pilus assembly protein [Bordetella avium 197N]
          Length = 426

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 149/391 (38%), Gaps = 34/391 (8%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           + +        ++ + + +  +L  P  V  + V             + + LF +  G +
Sbjct: 21  SPAYSAARTQHELVLEVGETRVLDAPG-VTRIAVGSGQVVQAQAVDGKEVILFARKEGVS 79

Query: 98  NVILI-GHDGKQMLNLDILIERD--IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           +V +  G  G +   L ++      I      L   +    + V  V   +V+ G     
Sbjct: 80  SVHVWRGQSGVRAYALRVMPAGFGHIRAEVEQLLAAMPALRLSV--VGHHLVIEGSGLPD 137

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D QR   L++ +                      +  E  V L V + E+ R  L ++G
Sbjct: 138 HDKQRISALAQRYPEVLDLTGD-------------VGWEQMVLLDVQVVELPRARLTELG 184

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S+    S P +S A  +G    S                   L AL +      LA 
Sbjct: 185 MHWSMGAEGSHPVRSHAGVWGSLQWSGAA------------IGARLQALAQRGEAVFLAR 232

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P L A SG +ASF +GG+  Y     +    S     YGV L  TP +   G I   I+ 
Sbjct: 233 PRLLARSGSAASFLAGGEVPY---RGAESEASTVFKPYGVSLKITPRIDPRGTIRSHIEV 289

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E S     +     P+ R R+A+T   +PSG T+VL G L  ++     G+P LS IP+L
Sbjct: 290 ESSSIDPTLTVPAGPAMRTRRAETEFNVPSGQTLVLGGFLGRELSSETRGVPWLSDIPVL 349

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G LF   R    +TE+ I  TP +V+P    
Sbjct: 350 GLLFGERRQQNRDTELAIFVTPTIVRPDDPA 380


>gi|170725113|ref|YP_001759139.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
 gi|169810460|gb|ACA85044.1| type II and III secretion system protein [Shewanella woodyi ATCC
           51908]
          Length = 436

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 162/392 (41%), Gaps = 32/392 (8%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +  V +     +V+ ++V +       V   + + L  ++ G  +V L   DGK +
Sbjct: 28  LKLYMGAVELYNAK-NVERIVVGNGKVLSAKVIDDKGVLLIAESPGNTDVQLWQKDGKLI 86

Query: 110 L-NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
             ++ +  +  +   +   +   A  +I+V      +++ G    +   ++   + E   
Sbjct: 87  KLSISVTPDNSLKTTDTIKKMLAAFPSIKVTENDGLIIVQGEA-DLSQKEQLETIIEADP 145

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGP 226
           +     +Y   +               + ++V I E  +  L  IG +   S+ G + G 
Sbjct: 146 NVVSLIKYLKFAK---------TMAPMIKMQVKIVEFNKSTLNNIGIKWESSMAGPAYGA 196

Query: 227 SKSFAADFGGKFVSEGG-----------------DFSVKGVLDRFSFETVLHALERATAI 269
           +K+F+A+      S G                                + +  L      
Sbjct: 197 AKAFSANPIFSVSSPGQYSETITSAITDSIGVLDTRGWNYFGIVTGIGSQIQLLSEKGDA 256

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           R LAEP LT  SG+SA+F +GG+   ++V S  GA  V   +YG+ L   P V     I 
Sbjct: 257 RMLAEPNLTTRSGESANFLAGGEFPIRSV-SGLGAVDVEYKEYGIKLDIEPVVDDDLNIV 315

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            R+  EVS     V    +P    R+ ++ + + +  TIV++GL+  ++ ++    PLL 
Sbjct: 316 SRVMAEVSSIDPSVAVDGIPGMLTRRTESVINVKNNETIVISGLVNSEMSKIVNKFPLLG 375

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            IPILG LF++  F   ++E+ I  TP +V P
Sbjct: 376 DIPILGELFKSRDFKDNKSELVIFVTPTVVYP 407


>gi|92113782|ref|YP_573710.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91796872|gb|ABE59011.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 483

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 94/429 (21%), Positives = 162/429 (37%), Gaps = 51/429 (11%)

Query: 43  EIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
                  + + +     L     V    + D   A   +   R + L G   G  ++ + 
Sbjct: 61  AQQGESTLRLDIGDQQRLVFERPVSRTALGDGDIASAQMVDARQLLLTGLAAGTTSLSVW 120

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
                      + +    A           +S   +   +DT  L G   ++    +A  
Sbjct: 121 RDGRDAPQRYRVSVRPRGARGM--------ESEYTLADGTDTPTLAGESESLARHAQA-- 170

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                         +    +  ++     G  QV   + + EV R  L+  GF       
Sbjct: 171 -------------RSRLGDQNTVDATRQTGPVQVQTDIRVVEVNRSKLQSAGFFFGKNNG 217

Query: 223 SS-------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
            +                     S+ F+   G  F +  G +++       S   V+ AL
Sbjct: 218 GNTLIGVGTSGALGGAEAVGDSFSEGFSFLTGSGFQTGNGGYNIVVGNANDSVLGVISAL 277

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
                  TLAEP+L  +SGQSASF +GG+  +  VS+  G   +   ++GV L  TPTVL
Sbjct: 278 RSNGFAYTLAEPSLVTLSGQSASFLAGGEFPFP-VSNDDGDVRIDFKEFGVRLQLTPTVL 336

Query: 324 SPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
               I L++  EVSE         +   +P+  VR+ DT+V+L  G +++++GL+ +   
Sbjct: 337 DSNSIMLKVAPEVSELDFTQGVEASGVAVPALNVRRTDTSVQLGDGESLIISGLVSNSTM 396

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYS-- 435
           Q  +  P L  +P++GA FR++RF  +  E+ +  TP LV P+A        P +     
Sbjct: 397 QTVDKFPGLGDLPVIGAFFRSTRFETQNKELVMIVTPHLVAPMAAGAPRPELPGEALRRY 456

Query: 436 VEDDAKAFF 444
                +  F
Sbjct: 457 DPSYLELLF 465


>gi|73539231|ref|YP_299598.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
 gi|72122568|gb|AAZ64754.1| type II and III secretion system protein [Ralstonia eutropha
           JMP134]
          Length = 469

 Score =  224 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 93/440 (21%), Positives = 171/440 (38%), Gaps = 57/440 (12%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
             T+++  L ++    A      +  A   +           + +       ++    ++
Sbjct: 21  MKTLLAAMLATAMLVTAIPRATAQEAAPAPS----------TLRLMAGAQKEIRPAQPIE 70

Query: 68  DVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            V V +P  AD ++   R+    + +  K  G  ++++    G       + ++      
Sbjct: 71  RVAVGNPAVADALLIKQRSGPPGVLVVAKQPGVTDLMIWPR-GAAQQTYTVQVDAITPDT 129

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                     +NI    V  T+   G  R    +                 +  +     
Sbjct: 130 --------GGANIAYSAVGATI--TGQSRDAYAA----------ARAQTAARVGSGKGGV 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------GP 226
           V++   +   + V + V + E+ + +LK++G       S                   G 
Sbjct: 170 VVDRSTVPVSNTVQVDVKVVEISKTVLKEVGINFFRNNSGFAFGSFSPSTLSKFTFTPGT 229

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             +  +            F++        F   +  LE     R LAEP+L A+SGQSAS
Sbjct: 230 GGANGSFSADITTPISNAFNLVAASLSHGFFANISLLEANGLARVLAEPSLVALSGQSAS 289

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---- 342
           F SGG+     V  + G T++    +G+ L  +PTVLS  RI L++  E S+        
Sbjct: 290 FLSGGEIPIP-VPQALGTTTIQFKPFGIGLTVSPTVLSDQRIALKVAPEASDLDPSRGIA 348

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +N   +P+   R+ADTT+EL  G + V+ GL+  +       +P L  +P++G  F+N  
Sbjct: 349 INGAIVPAIVTRRADTTIELGDGESFVIGGLVSRNTVSNVNKVPFLGDLPVIGPFFKNLN 408

Query: 403 FNREETEIFIAATPFLVKPV 422
           F++E+ E+ I  TP LVKP+
Sbjct: 409 FHQEDRELMIVVTPRLVKPL 428


>gi|33593025|ref|NP_880669.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|33563400|emb|CAE42276.1| putative type II secretion system protein [Bordetella pertussis
           Tohama I]
 gi|332382437|gb|AEE67284.1| putative type II secretion system protein [Bordetella pertussis CS]
          Length = 449

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102
           +++ + +     L++      V ++DP  ADV V       P  + L G+  G   + + 
Sbjct: 40  RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 99

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
               +      + +   +  ++  L R       +V+M  D+ V+ GM  + +       
Sbjct: 100 SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 151

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                   +     A   + KV+++  I     V ++V + E+ R ++K +G        
Sbjct: 152 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 206

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                 S   D         G            F   L  L+     R LAEPTL A+SG
Sbjct: 207 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           QSASF +GG+     VS+  G TSV    +G+ L  TPTV+S  RI L++  E SE    
Sbjct: 261 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 319

Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                +         P+ R RKADT VEL  G T V++GL+    +     +PLL  +PI
Sbjct: 320 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 379

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447
           +GA FRN ++++E+ E+ I  TP LV+P+A    L  P        DA       +    
Sbjct: 380 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 438

Query: 448 VNK 450
           ++ 
Sbjct: 439 MSG 441


>gi|33596969|ref|NP_884612.1| putative type II secretion system protein [Bordetella parapertussis
           12822]
 gi|33600811|ref|NP_888371.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33566420|emb|CAE37673.1| putative type II secretion system protein [Bordetella
           parapertussis]
 gi|33568411|emb|CAE32323.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 448

 Score =  223 bits (569), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 110/423 (26%), Positives = 177/423 (41%), Gaps = 41/423 (9%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH-----SPRTMYLFGKNVGQANVILI 102
           +++ + +     L++      V ++DP  ADV V       P  + L G+  G   + + 
Sbjct: 39  RELLLEVKGQQPLRLDAAPSRVAIADPQVADVKVLAPGVGRPGEVLLIGRQAGTTELRVW 98

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
               +      + +   +  ++  L R       +V+M  D+ V+ GM  + +       
Sbjct: 99  SRGSRDPQVWTVRV---LPQVQAALARRGVGGGAQVDMAGDSGVVTGMAPSAEAH----- 150

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
                   +     A   + KV+++  I     V ++V + E+ R ++K +G        
Sbjct: 151 -----RGAAEAAAAAAGGNDKVVDMSQINTSGVVQVEVKVVELARSVMKDVGINFRADSG 205

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                 S   D         G            F   L  L+     R LAEPTL A+SG
Sbjct: 206 PWSGGVSLLPDL------ASGGMFGMLSYTSRDFSASLALLQNNGMARVLAEPTLLAMSG 259

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           QSASF +GG+     VS+  G TSV    +G+ L  TPTV+S  RI L++  E SE    
Sbjct: 260 QSASFLAGGEIPIP-VSAGLGTTSVQFKPFGIGLTVTPTVISRERIALKVAPEASELDYA 318

Query: 343 VNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                +         P+ R RKADT VEL  G T V++GL+    +     +PLL  +PI
Sbjct: 319 NGISSIDSNNRITVIPALRTRKADTMVELGDGETFVISGLVSRQTKASVNKVPLLGDLPI 378

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKA-----FFFNR 447
           +GA FRN ++++E+ E+ I  TP LV+P+A    L  P        DA       +    
Sbjct: 379 IGAFFRNVQYSQEDRELVIVVTPRLVRPIARGVTLPLPGAR-QEVSDAGFNAWGYYLLGP 437

Query: 448 VNK 450
           ++ 
Sbjct: 438 MSG 440


>gi|323525746|ref|YP_004227899.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
 gi|323382748|gb|ADX54839.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1001]
          Length = 474

 Score =  223 bits (567), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 108/481 (22%), Positives = 180/481 (37%), Gaps = 51/481 (10%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +  +    +  ++ +    G  + + I +     L     ++ V + DP+ ADV+V    
Sbjct: 1   MTALLCGASMAVSPAGFAAGGAQALDIVVGSQQSLASGHTLRRVAIGDPSVADVLVIRGD 60

Query: 86  T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
               + L GK+ G  NV+L        L+  + +    A      +  +      V+++ 
Sbjct: 61  RTGGVLLIGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPDTPSVKVLG 114

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-------- 194
           DT ++ G   T++  QRAV  +     Q      A          +  A           
Sbjct: 115 DTALISGSAPTMEAHQRAVAAAGIEAHQRATLGSAAKGGTGGKAGVASALAGADAANGGA 174

Query: 195 -------QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                  Q+    T+A            E  R +LKQ+G       +         +   
Sbjct: 175 SGGESGTQIYDSSTVATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALS 234

Query: 236 GKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                              F++            L  +E     R LAEPTL A+SGQSA
Sbjct: 235 SATYGATPTFNSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSA 294

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----I 341
           SF +GG+     +    G TS+    YGV L  TPTVLSP RI L++  E S+      +
Sbjct: 295 SFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAV 353

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            ++   +P+   R+ DTTVEL  G + V+ GL+  +       +PLL  +P++GA F+  
Sbjct: 354 TISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQL 413

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
            + + + E+ I  TP LV P+A             E      + + +  +     A    
Sbjct: 414 NYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLLGGVAARDAAPGFS 473

Query: 462 G 462
            
Sbjct: 474 K 474


>gi|296158514|ref|ZP_06841344.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
 gi|295891082|gb|EFG70870.1| type II and III secretion system protein [Burkholderia sp. Ch1-1]
          Length = 590

 Score =  223 bits (567), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 85/443 (19%), Positives = 167/443 (37%), Gaps = 28/443 (6%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            +R   +++   L               A  A    +D      + + +   +V IL +P
Sbjct: 11  RRRILPSVLVGMLLC---------EAVPAALAQAAATDSLSAGTRVLEMFRGEVRILHIP 61

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             ++ + + +       V    ++ L G+  G  ++++    G  +     + + ++   
Sbjct: 62  GTIKRIAIGNGKLLTANVVDG-SLMLLGEQDGITSLVVWNDKGIALQTTVRIAKAEVNAS 120

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              LR  +   + +R++ +  ++VL G++      +    + +             +  +
Sbjct: 121 LEQLRAVLKSVAGLRIDAIGSSIVLSGVI-----HRDMAGIVKAATQDMKNVVDTTTVDE 175

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                   A    V  KV I EV R   + +G              + +   G       
Sbjct: 176 GD------ALRKTVHFKVQIMEVTRTGQRNLGIAWDSAFKGPQIGGAASVATGAAKAVTA 229

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G       +   +  + ++          LA P L   SG +ASF +GGQ        + 
Sbjct: 230 GTSYFLAGIAS-NITSQINFAVENGDAYVLAAPELNTKSGGTASFLAGGQVPIPQS-GAL 287

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G TS+   DYG+ L   P V +   I   + TE+S+    V    MP +  R   + + +
Sbjct: 288 GTTSIEYKDYGIKLSIVPVVDANNIISAHLTTEISQIDPSVTYAGMPGFLTRNTSSDISM 347

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G T+ ++GL+  D      G+P LS++PI+G LFR+  F  +++++ I  TP +  P 
Sbjct: 348 RAGETLAISGLVSADAANGSNGMPFLSQVPIIGQLFRSDSFRAKKSDLVIFVTPVISDP- 406

Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
              +LS   D  +  D     F 
Sbjct: 407 ---ELSPNTDLLARADKLDENFR 426


>gi|254479855|ref|ZP_05093103.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214039417|gb|EEB80076.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 677

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 92/498 (18%), Positives = 174/498 (34%), Gaps = 74/498 (14%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L       +   L    P  A +     +NA +I+     I + K I   +++  + + 
Sbjct: 132 RLDNISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDVSANIDRIKDIIQRMDRSAVQKT 191

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN----VILIGHDGKQMLNLDILIER 118
            +      V+D   A +   +        K  G A     ++        +++ D +   
Sbjct: 192 DIIKLRYAVADDVVAMLDKLNKSE----AKQSGGAEPEVLLVADSRTNSVLVSGDEMERA 247

Query: 119 DIAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
            ++ L   L   +  S N+RV      E      VL  +++ I   + A   ++   +++
Sbjct: 248 RMSQLIKHLDTPLEQSGNVRVVYLEYAEAKEIAEVLTRVMQNINSLENADGKAQRSNAKT 307

Query: 172 GRNQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
              +                  + + V++ L+I    QV ++  I E+     + +G Q 
Sbjct: 308 ATIEADEGTNSLIITAETDEMAAIESVIHRLDIR-RAQVLVEAIIVEMTFSEGQDLGLQW 366

Query: 218 SITGSSSGPSKSFAADF--------------------------------GGKFVSEGGDF 245
               + SG   S                                     G    + G   
Sbjct: 367 LFANTDSGFYGSNINSPSQAQQLAGALNPDNGDEATPSNDSEFDVGALAGALASTPGLSL 426

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
               V D  +   +L+AL+       L+ P+L  +  Q A  T G    + T S +    
Sbjct: 427 GWGSVDDDLTMTVILNALKTQGNANILSTPSLLTLDNQEAFITVGQNVPFITGSYTNSGS 486

Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
                    ++   + G+ L  TP +     + L I+ EVS  +IG +     +      
Sbjct: 487 SDGASNPFQTIERENVGITLAVTPHINEGDSVVLEIEQEVSNVIIGASQISEAADIITSE 546

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RK  T V       +VL GL++D++Q  ++ +P+L  IP LG LFR    +  +T + I 
Sbjct: 547 RKIQTKVLAQDSKVVVLGGLIEDNVQDGQQKVPILGDIPFLGRLFRTDSVDVSKTNLLIF 606

Query: 414 ATPFLVKPVAMRDLSRPD 431
             P +++  A  D +  D
Sbjct: 607 IRPTIIRDNAQLDGATAD 624


>gi|330953053|gb|EGH53313.1| type II and III secretion system protein [Pseudomonas syringae Cit
           7]
          Length = 416

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 97/461 (21%), Positives = 164/461 (35%), Gaps = 81/461 (17%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L +   + A   P   A +               + I       ++  V +  + V DP
Sbjct: 12  SLLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDP 67

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             ADV V+      L G   G  ++++                          R+ +   
Sbjct: 68  KIADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM--- 106

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
                     V + G   T          ++  L                          
Sbjct: 107 ----------VFVRGRATTAMVESVTAPSADAQL------------------------PS 132

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------ 242
           QV   +   EV R  LK+        GS++    +     G                   
Sbjct: 133 QVQTDIRFIEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPNIPLNN 192

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            +F++           +++A+E +    TLA P+L A++GQSASF +GG+      +   
Sbjct: 193 SNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEG 252

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADT 358
              S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT
Sbjct: 253 NGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDT 312

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           ++ L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP L
Sbjct: 313 SIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHL 372

Query: 419 VKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
           V+P+A      S P +          + +F      ++  G
Sbjct: 373 VQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413


>gi|330895618|gb|EGH27925.1| type II and III secretion system protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 416

 Score =  219 bits (558), Expect = 8e-55,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   + A   P   A +               + I       ++  V +  + V DP 
Sbjct: 13  LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            ADV V+      L G   G  ++++                          R+ +    
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
                    V + G   T          ++  L                          Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
           V   +   EV R  LK+        GSS+              +                
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           +F++           +++A+E +    TLA P+L A++GQSASF +GG+      +    
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
             S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373

Query: 420 KPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
           +P+A      S P +          + +F      ++  G
Sbjct: 374 QPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 413


>gi|317403496|gb|EFV84000.1| hypothetical protein HMPREF0005_03138 [Achromobacter xylosoxidans
           C54]
          Length = 458

 Score =  219 bits (557), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 109/474 (22%), Positives = 182/474 (38%), Gaps = 35/474 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
                   L     + A +     + A     +       + I++ +     L +     
Sbjct: 1   MMRFQRTTLICVLSAAAAMTCGAASLAQTAPAAGA-SAPARDIAVAVKGQQALMLDGAPV 59

Query: 68  DVLVSDPTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            + + DP  ADV V +       ++ L+GK  G   + +            + +  ++  
Sbjct: 60  RIAIGDPDVADVKVLAASGKRQASVLLYGKKAGTTQLQIWTGANAAPQVWTVRVAGNVQQ 119

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           + M  R     +N+ V    +  V+ G   +    Q +V  +   +        + + S 
Sbjct: 120 V-MAGRGVAGGANVDV--AGERAVVSGQAESPLTHQASVAAAGAAVGDKNVVDVSTAGSG 176

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD----FGGKF 238
            V+ +     E             R ++KQ G   +      G + S   D      G  
Sbjct: 177 GVVQVEVKVVEV-----------SRSVMKQAGISFAGRSGPWGSTNSITPDGFPAPLGFN 225

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                        D   F   L  L+     R LAEPTL A++GQSASF +GG+      
Sbjct: 226 KGAALASGFSLFYDSNDFSARLRLLQNNGMARVLAEPTLVALTGQSASFLAGGELPIPEA 285

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---------IGVNAGDMP 349
               G T+VT   +G+ L  TPTVLS  RI L++  E SE              +   +P
Sbjct: 286 -GGLGTTTVTFKPFGIGLTVTPTVLSRERIALKVAPEASELDYSNAIAVSNGTNSTTLIP 344

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + R R+ADTTVEL  G + V++GL+    + L   +P+L  +PI+G+ FR+  + +E+TE
Sbjct: 345 ALRTRRADTTVELGDGESFVVSGLVSRQTRALVNKVPMLGDLPIIGSFFRSVDYTQEDTE 404

Query: 410 IFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           + I  TP LV+P+A    L  P       D A   +   +    G ++      
Sbjct: 405 LVIVVTPRLVRPIARGVTLPLPGAKQEAADTAFNAWGYYLMGPVGGQQMPGFSR 458


>gi|70734199|ref|YP_257839.1| type II/III secretion system protein [Pseudomonas fluorescens Pf-5]
 gi|68348498|gb|AAY96104.1| bacterial type II/III secretion system protein [Pseudomonas
           fluorescens Pf-5]
          Length = 417

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 98/440 (22%), Positives = 168/440 (38%), Gaps = 76/440 (17%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           +A AA +            + IG      LQ  V +  + V DP  ADV     +   L 
Sbjct: 24  QALAAAVAGCSSLAPLPAALEIGEGLQQELQSAVAITRLAVGDPKIADVQTTGNKAFLLT 83

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G   G  ++++                                                 
Sbjct: 84  GMAPGATSLMVWTACASTP----------------------------------------- 102

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                  ++++   +   +         +S   ++         QV   +   EV R  L
Sbjct: 103 -------RQSMVFVQGRATADMSTGRLPASDDPLL-------PSQVQTDIRFVEVSRTKL 148

Query: 211 KQ-----IGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------DFSVKGVLDRFSFE 257
           K+      G  H+    + G +       G    + GG        + +           
Sbjct: 149 KEASVSIFGRGHNFLFGAPGTAPVTGGTSGSVTPTFGGRRTNIPLDNGTFNIGFGNGRVL 208

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           T+++ALE +    TLA P+L A+SGQSASF +GG+      S+ + + ++   ++G+ L 
Sbjct: 209 TLINALEGSGFAYTLARPSLVALSGQSASFLAGGEIPIPVPSTGSNSVTIEYKEFGIRLT 268

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            TPT++  GRI L++  EVSE      + +    +P+  VR+ DT++ L  G + V++GL
Sbjct: 269 LTPTIVDRGRISLKVAPEVSELDYSNAVTIAGTQVPALTVRRTDTSISLADGESFVISGL 328

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPD 431
           +  +        P L  IP+LGA FR++  NREE E+ +  TP LV+P+A      + P 
Sbjct: 329 ISTNNSSQVNKFPGLGDIPVLGAFFRDTTINREERELLMVVTPHLVQPLAADAKLPALPG 388

Query: 432 DHYS--VEDDAKAFFFNRVN 449
           +       +  + FF    N
Sbjct: 389 ERLRNYDPNFYRMFFLENGN 408


>gi|330976799|gb|EGH76834.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 416

 Score =  218 bits (555), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 97/460 (21%), Positives = 163/460 (35%), Gaps = 81/460 (17%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   + A   P   A +               + I       ++  V +  + V DP 
Sbjct: 13  LLALVIA-ALCAPGAWAASGSCAGLAAMPAA---VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            ADV V+      L G   G  ++++                          R+ +    
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
                    V + G   T          ++  L                          Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
           V   +   EV R  LK+        GSS+              +                
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           +F++           +++A+E +    TLA P+L A++GQSASF +GG+      +    
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
             S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373

Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453
           +P+A      S P +          + +F      ++  G
Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413


>gi|237653358|ref|YP_002889672.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|237624605|gb|ACR01295.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 479

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 98/443 (22%), Positives = 170/443 (38%), Gaps = 39/443 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
            +R    ++   L    P          A+AA        +    +I +   +  +L   
Sbjct: 12  RRRALPPLVCAILILGLP--GPSRAAPPASAAPPEPGRAALAVVHEIQMFAGETRVLP-Q 68

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D Q + V D       V   R + L     G   + +    G+       + + D A +
Sbjct: 69  RDAQRLAVGDAKVLSAAVLDDREILLIANGPGDTMLQVWTRSGRSQRIKITVRQTDTARI 128

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              L+ F+ D   +R   + D VV+ G   +  +  +  EL++ F               
Sbjct: 129 ARDLQGFLHDVPRLRTRTIGDNVVIEGEGLSDAERDKVTELAKRFPQLIDFTS------- 181

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                  +  +      V   E+ R  L+ +G   +  G            +        
Sbjct: 182 ------RVGLDRMFAFDVRFVEISRSGLRDLGIDWTTQGKPLLGIGVIGDLYHDNRTGAT 235

Query: 243 GDFSVKGVLDR--------------------FSFETVLHALERATAIRTLAEPTLTAISG 282
              ++                           SF   L+ L +      LA P L+A + 
Sbjct: 236 VTRTLGSGELSSEVEIEANRVSPFAANVALVGSFFGRLNLLAQKGDAVILASPRLSARNR 295

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI 341
             ASF +GG+     V+S+TG  SVT  +YG+ L+   P   + G I  RI+TEVS    
Sbjct: 296 GEASFLAGGEIPVP-VASATGTPSVTFKEYGIRLNILEPVADAAGTIRARIRTEVSSLDR 354

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            V A  +P    R+ +T   L +G T+VL+G+L+ + Q  +  +P L ++P++G LFR++
Sbjct: 355 SVAAQGVPGLLSRRTETEFNLRNGETLVLSGVLQREQQSDENALPHLGELPVIGRLFRST 414

Query: 402 RFNREETEIFIAATPFLVKPVAM 424
           RFN  E+E+ +  TP+L++P   
Sbjct: 415 RFNSRESELVVFVTPWLLEPGEG 437


>gi|317403407|gb|EFV83920.1| hypothetical protein HMPREF0005_02046 [Achromobacter xylosoxidans
           C54]
          Length = 453

 Score =  218 bits (555), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 100/444 (22%), Positives = 166/444 (37%), Gaps = 35/444 (7%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            +      G+ + + + +  +L     V  V + D      +    R + +F +  G ++
Sbjct: 17  AARSAWPAGQTLEMQVGESRVLAESG-VTRVAIGDSQVLSAIATDSREVVVFARTEGVSS 75

Query: 99  VILIGHDGKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           + +    G Q  ++ +       +      L   I  +   +  V   VV+ G   +  D
Sbjct: 76  IQVWADGGVQAYDVHVAAAGVTRLRAEVDALLARIPGARSSL--VGGRVVVEGDDLSDDD 133

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
             R   L+E +                      +  +  V L V + E+ R  L++IG +
Sbjct: 134 HARIAALAEHYPEVMDFTG-------------RVGWDSMVQLDVQVVEMPRSRLREIGVR 180

Query: 217 H-SITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLD-RFSFETVLHALERA 266
              +T        ++ A   G           +     SV G           + AL ++
Sbjct: 181 WEGLTQGGVNAGLAWDAGSLGRMARPGEAVIDTPAPVSSVAGYFGVNALLSARIAALAQS 240

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                LA+P L A SG SA+F +GG+  Y +  S    T++    YGV L  TP +   G
Sbjct: 241 GEAVMLAQPQLLARSGASATFLAGGEVPYVSTDSRGNPTTL-FKPYGVSLRITPRIDRNG 299

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I   I+ E S   + +     P+ R R+A T   + SG T+V+ G L  +      G+P
Sbjct: 300 VIRSLIEVEASSVDMALTGASGPALRTRRASTEFNVRSGDTLVIGGFLSRERADDSSGLP 359

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
            L  IPILGALF + R+   ETE+ I  TP +V            D      D     F 
Sbjct: 360 GLKDIPILGALFASRRYQLRETELAIFVTPRIVSRNEPAM----TDRVRRGRDVIRAAFP 415

Query: 447 RVNKIYGPKEASEVEGQNYKGAIG 470
             +++    E   + G N  G  G
Sbjct: 416 EPSRL--GTEVPVMAGWNIHGGKG 437


>gi|221066739|ref|ZP_03542844.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220711762|gb|EED67130.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 467

 Score =  218 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 97/453 (21%), Positives = 161/453 (35%), Gaps = 72/453 (15%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINI----SDVEIGKGKKISIGLNKVIILQVPV 64
           FT + +   +   + A     + A A  +           G    + + +    +L   +
Sbjct: 7   FTALGLASSAILSTFATSAMAQTAAADNVRAGVVSVATPTGAASPLPLTMGSQHVLLPAM 66

Query: 65  DVQDVLVSDPTKADVVVHSPR------TMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
            +  + V DP   DV V           + L  K  G   + +    G    +  + +  
Sbjct: 67  PLARLAVGDPNVLDVKVLRSTGNSSAPELLLTPKAPGSTTLSIWSTRG-LSQSWQVEVSS 125

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L+  L                                A+EL+   L  +      +
Sbjct: 126 PSLLLKKNLDSV--------------------------HDHALELASLRLKAAKDTALLD 159

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------- 230
            S   V         + V + V + E ++  LK+ G      GS++              
Sbjct: 160 RSQISV-------RSNTVQVDVQVVEFKKTALKRAGINLFSGGSNNHGFSFGMYTPGASS 212

Query: 231 ----------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                           +        +                   L  LE     R LA+
Sbjct: 213 SSGSGSSSGGSGDGGASGGSTALSSAMNLVLGFSKAFSGAGISAQLGFLEGNGLARVLAK 272

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           PTL A +GQSASF +GG+      S+S+   S+   ++GV L  TPTVLS  RI L++  
Sbjct: 273 PTLVAHTGQSASFLAGGEIPIPVPSTSSNNISIRYKEFGVKLQLTPTVLSNERIALKVAP 332

Query: 335 EVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           E S+      + +    +P+   R+ADT VEL  G + V+ GL+          +PLL  
Sbjct: 333 EASDLDYTSGVTIAGVAVPAIATRRADTMVELADGESFVIGGLVSRSTSSSVNKVPLLGD 392

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +PILG  F+N  ++++E E+ I  TP LV+P+ 
Sbjct: 393 LPILGPFFKNLNYSQDEKELVIIVTPRLVQPLP 425


>gi|66047618|ref|YP_237459.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63258325|gb|AAY39421.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
          Length = 416

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 96/460 (20%), Positives = 166/460 (36%), Gaps = 81/460 (17%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L +   +    P    A+ +   ++ +       + I       ++  V +  + V DP 
Sbjct: 13  LLALVIATLCAPGAWAASGSCAGLAAMPAA----VEIDQGIQQEVRSAVPITRIAVGDPK 68

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            ADV V+      L G   G  ++++                          R+ +    
Sbjct: 69  IADVHVNGTDGFLLTGVAQGTTSLMVW------------------TACASAPRQSM---- 106

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
                    V + G   T          ++  L                          Q
Sbjct: 107 ---------VFVRGRATTAMVESVTAPSADAQL------------------------PSQ 133

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGG 243
           V   +   EV R  LK+        GSS+              +                
Sbjct: 134 VQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPLNNS 193

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           +F++           +++A+E +    TLA P+L A++GQSASF +GG+      +    
Sbjct: 194 NFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGN 253

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTT 359
             S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ DT+
Sbjct: 254 GISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRTDTS 313

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV
Sbjct: 314 IALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLV 373

Query: 420 KPVAMRD--LSRPDD--HYSVEDDAKAFFF--NRVNKIYG 453
           +P+A      S P +          + +F      ++  G
Sbjct: 374 QPLAANARLPSLPGEALRTYDPSFPRLYFLENGDFDRRDG 413


>gi|331092898|ref|ZP_04586842.2| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021233|gb|EGI01290.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 416

 Score =  217 bits (553), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 100/453 (22%), Positives = 162/453 (35%), Gaps = 80/453 (17%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A   P   A +   N           I I       +Q PV +  + V DP  ADV V 
Sbjct: 19  IALSAPSAWAASGSCNGLAAMPAA---IEIDQGIQQNVQSPVAITRIAVGDPKVADVHVS 75

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
           +     L G   G  ++++            +                            
Sbjct: 76  NSDGFLLTGVAQGTTSLMVWTACSSAPRQSMVF--------------------------- 108

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
                   VR    +     L+      +                       QV   +  
Sbjct: 109 --------VRGRASASMVETLAAPSTDANL--------------------PSQVQTDIRF 140

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGV 250
            EV R  LK+        GS++    +     G                    +F++   
Sbjct: 141 IEVSRTKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWG 200

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                   +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   
Sbjct: 201 GGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYK 260

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGG 366
           ++GV L  TPTV+   RI L++  EVSE      I ++   +P+  +R+ DT++ L  G 
Sbjct: 261 EFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITISGTTVPALNIRRTDTSIALADGE 320

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAM 424
           + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP LV+P  V  
Sbjct: 321 SFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAVDA 380

Query: 425 RDLSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
           R  S P +          + +F      ++  G
Sbjct: 381 RLPSLPGESLRNYDPSFPRLYFLENGDFDRRDG 413


>gi|113867004|ref|YP_725493.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
 gi|113525780|emb|CAJ92125.1| flp pilus assembly protein secretin CpaC [Ralstonia eutropha H16]
          Length = 478

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 95/453 (20%), Positives = 176/453 (38%), Gaps = 33/453 (7%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P    A       S     +   I +   +V  L+VP  ++ V + +       V   R 
Sbjct: 22  PVTTAARTGAQPPSYELPARFGAIELFKGEVRALEVPGTIRRVAIGNGALVSSTVVDGR- 80

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTV 145
           + L  + +G  ++I+    G  +     +   D A +   LR  +     +++E+V  +V
Sbjct: 81  LLLLAEEIGTTSLIVWNERGVALQGKLRVAPADTADVAQRLRASLGSVRGLKIEVVGPSV 140

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G+V       + V L +T  S          + +        A +  V  KV I E+
Sbjct: 141 VLSGIVDP-----QMVPLIKTATSGLDSVVNLVRADEGD------ALKKTVHFKVHIMEI 189

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFA---------------ADFGGKFVSEGGDFSVKGV 250
            R  ++++G     + +    + +                 A F        G  S   +
Sbjct: 190 TRRGMEKLGIAWQQSFNGPQIAFAGNPVHTGRYRTLPSTDAATFTDTPSQVAGAASGFYL 249

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
               +  + ++          LA P L + SG  A+F +GG+        + G T V   
Sbjct: 250 GIATTIFSRINLAISDGDAYVLAAPELNSKSGGLATFLAGGEVPIPKA-GAFGTTDVDYK 308

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            YG+ L+  P V     I   ++TE+S+    V+ G  P++  R+  +   + +G T+ +
Sbjct: 309 PYGIKLNIRPAVNVDNVISTTLETEISQIDPSVSFGGFPAFLTRRTTSETSIRAGETLAI 368

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           +GL+  D  +  + +PLL  IPILG LFR+  F   ++++ I  TP +  P +  + +  
Sbjct: 369 SGLVNADASKAVDKVPLLGSIPILGRLFRSDEFRNNKSDLVIFVTPVVYDPASPENAAL- 427

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                   D  A + +R  +      A+ V  Q
Sbjct: 428 ---LQRGADVDANYRHRFGEPSPLPAANAVREQ 457


>gi|307730006|ref|YP_003907230.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
 gi|307584541|gb|ADN57939.1| type II and III secretion system protein [Burkholderia sp.
           CCGE1003]
          Length = 490

 Score =  216 bits (551), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 101/497 (20%), Positives = 180/497 (36%), Gaps = 67/497 (13%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
           +  +   ++   + +    G  +++ + +     L     ++ V + DP+ ADV++    
Sbjct: 1   MAALVCGSSMAASPAGFAAGGAQQLELLVGSQQSLASGHTLRRVAIGDPSVADVLIIKGD 60

Query: 86  T---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
               + L GK+ G  NV+L        L+  + +    A      +  +      V ++ 
Sbjct: 61  KTGGVLLVGKSPGSTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVRVLG 114

Query: 143 DTVVLHGMVRTIQDSQR-------------------------------AVELSETFLSQS 171
           D+ ++ G   T++  QR                                           
Sbjct: 115 DSALISGSAPTMEAHQRAVAAAAIEARQRATLGTVANSAANSAAAGASVGRGGRGTAVSG 174

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA------------EVRRDILKQIGFQHSI 219
                 + ++    +  +  G+ Q+    T+A            E  R +LKQ+G     
Sbjct: 175 MSGAAGSDATNGGASFASAMGDAQIYDTSTVATRSVVQVDVRVVEFSRTVLKQVGLNILK 234

Query: 220 TGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETVLHALERATAI 269
             +         +                      F++            L  +E     
Sbjct: 235 QNNGFTFGSFAPSALSSATYGPTPSFNSVAPISSAFNLVFNSATRGLFADLSLMESNNLA 294

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           R LAEPTL A+SGQSASF +GG+     +    G TS+    YGV L  TPTVLSP RI 
Sbjct: 295 RILAEPTLVALSGQSASFLAGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIA 353

Query: 330 LRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L++  E S+      + ++   +P+   R+ DTTVEL  G + V+ GL+  +       +
Sbjct: 354 LKVAPEASQLDFANAVTISGVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKV 413

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  +P++GA F+   + + + E+ I  TP LV P+A             E      + 
Sbjct: 414 PLLGDLPVIGAFFKQLNYQQNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWR 473

Query: 446 NRVNKIYGPKEASEVEG 462
           + +  +     A     
Sbjct: 474 SFLGGVAARDAAPGFSK 490


>gi|329912918|ref|ZP_08275837.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
 gi|327545493|gb|EGF30693.1| putative secretory apparatus [Oxalobacteraceae bacterium IMCC9480]
          Length = 608

 Score =  216 bits (550), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 95/435 (21%), Positives = 172/435 (39%), Gaps = 43/435 (9%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P+V +        A +   +D  +    +I + + +  +   P  V  + V +     
Sbjct: 88  LKPTVRRPQVASRPYAPISPQNDQGMIP--EIEMFVGESRVFPTPG-VARIAVGNGQIMS 144

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIR 137
                 + + +F   VG +++ +   DG+       ++  D   +   +  F+   S  R
Sbjct: 145 AAALDEKEVIVFANGVGTSSLFVWNADGRYQRVKVSIVPGDTTRIARDVTAFLKSMSGTR 204

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGEDQV 196
             ++ D V++ G   +  +  +   L + +               +++N    +  E  V
Sbjct: 205 TSIIGDKVIIEGDNLSDVELAKIDMLEKRY--------------PQIINFTNQLGWEPMV 250

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFVSEG 242
            L V + E   + L+ IG +    G ++  +               +  +       S  
Sbjct: 251 MLDVKVVEFPTNELRDIGLKWGSVGGAAVGAIWSPGRRGTDGPYQVNIQSANAAPITSPE 310

Query: 243 GDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G  S   V    +            L+ L +      LA+P L+A SG  ASF +GG+  
Sbjct: 311 GSGSPVRVPGGLNVLSALNLGLNAQLNLLAQQGKASLLAQPQLSARSGTKASFLAGGEFP 370

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y   + +    +V    YG+ L   P V   G I   I  EVS+    V+    P+ + R
Sbjct: 371 YSVATING--VTVQFKPYGIKLDILPKVDRNGVIRATIDAEVSKIDASVSTVVGPALQTR 428

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K  T   + +G TIVLAG+L+ D     + +PLL  +P+LGALFR+ RF  +ETE+ +  
Sbjct: 429 KTKTEFNVLAGDTIVLAGMLQADNSTSIDKVPLLGDVPVLGALFRSKRFENKETELVVFV 488

Query: 415 TPFLVKPVAMRDLSR 429
           TP +V   +   + R
Sbjct: 489 TPTIVDSRSPALIER 503


>gi|319791194|ref|YP_004152834.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315593657|gb|ADU34723.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 532

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 88/438 (20%), Positives = 163/438 (37%), Gaps = 34/438 (7%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ + ++ ++++P  V  V + +    +  V     M +  ++ G + + +   +G   
Sbjct: 96  LTLYVGQMALVKMPG-VSRVAIGNGKVMEARVLDGANMLITAQDAGDSTLHVWDKNGTVR 154

Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                +   D+  +   LR      S + +  + + +++ G        +R   +++ + 
Sbjct: 155 KLKVRVNVADLERIADELREITRGISGVNIRRIGERIIMDGNSLDPAAVERLNTVAQLYA 214

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                   A+           I  +  V ++V I E  +  L  +G +   +G       
Sbjct: 215 PAVVSLATAD----------RIRVDRMVDIQVRIVEFSKTALDDLGVRWQSSGDGFNFGL 264

Query: 229 SFAADFGGK--FVSEGGDFSVKGVLD-----------------RFSFETVLHALERATAI 269
                  G    + +G  F+                         S  + ++ L +    
Sbjct: 265 FSDIASSGSYRILPDGSAFNTSTPQGTALLGQNRRMPEAYFGIGLSLTSRINLLVQRGNA 324

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             LA P L+  SG  A F +GG+       S+ GA SV    YGV L+  P     G + 
Sbjct: 325 FLLASPNLSTRSGGEAKFLAGGEIPLP-ALSTQGAGSVEFKPYGVRLNIKPIADGEGNVS 383

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
             I TEVS     V    +P   +R+ DT   + +G TIVL+GLL  +  +  +G+P L 
Sbjct: 384 GSILTEVSSIDRSVAVQGIPGLLIRRTDTEFNVKAGETIVLSGLLSRESTRSSDGVPGLR 443

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           K PI+G  FR      +E E+ +  TP +V P   R   R +    +E D  + F     
Sbjct: 444 KTPIIGRAFRADNDTDKEQEVVVFITPRVVGPADSR--PRIERARELERDVGSNFGTLTE 501

Query: 450 KIYGPKEASEVEGQNYKG 467
               P  +         G
Sbjct: 502 DKSDPNGSRPPAAAADIG 519


>gi|330819176|ref|YP_004348038.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327371171|gb|AEA62526.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 564

 Score =  216 bits (549), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 90/445 (20%), Positives = 172/445 (38%), Gaps = 31/445 (6%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
              P   A     +  +    +   + +   ++ ++ VP  ++ + + D +     V   
Sbjct: 26  PGAPPALAARQAEHEENATPAQHALLDLYRGEIRLIDVPGRIKRIAIGDGSLVTANVVDG 85

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSD 143
           R + L  +  G  +++    +G  +     + + ++      LR  +A   +++V     
Sbjct: 86  R-LMLLAEKAGVTSLVAWTANGIALNTTVRVAKGNVRETAAQLREVLAIVPDVKVIESGP 144

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----AGEDQVTLK 199
            ++L G V                    GR + A +    ++N + +    A +  +  K
Sbjct: 145 NILLTGTV---------------HRDMLGRIKAATAGVPNLVNAIAVDEGDALKKTIHFK 189

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V I E+ R+  + +G +     +        A  + G     G    + G+       + 
Sbjct: 190 VRIMELTRNAQENLGIEWDRKIAGPQAG---AQGYIGSQAVAGPGMVIAGI--STHIAST 244

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L+ +        LA P L   SG +ASF +GGQ        + G T V   DYG+ L   
Sbjct: 245 LNLMITRGDAYVLAAPELNTKSGGTASFLAGGQVPIPRA-GALGTTDVEYKDYGIKLDIK 303

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V +   I  +I TE+S+    V+ G  P +  R A + + L +G T+ ++GL+  D  
Sbjct: 304 PVVDANNVISAQIDTEISQIDPSVSYGGYPGFLTRSARSDISLRAGETMAISGLVNADAI 363

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
                +P L ++PI+G LFR+  F  + +++ I  TP +  P     L+   D  +  D 
Sbjct: 364 GNMSRLPFLGRLPIIGRLFRSDEFRSKRSDLVIFVTPMISDPT----LAPNTDLLARADR 419

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQN 464
               F  R        E     G++
Sbjct: 420 IDRGFHQRHGDPSPLAERDRARGKD 444


>gi|71735124|ref|YP_276550.1| type II/III secretion system protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555677|gb|AAZ34888.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. phaseolicola 1448A]
          Length = 416

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           ++  A              + I       ++ PV +  + V DP  ADV V+      L 
Sbjct: 24  QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G   G  ++++                          R+ +             V + G 
Sbjct: 84  GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             T                        ++ ++            QV   +   EV R  L
Sbjct: 113 ATTSMV---------------ETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
           KQ G      GS++    +     G                     F++           
Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+ALE +    TLA P+L A+SGQSASF +GG+      ++     S+   ++GV L  
Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE        +    +P  R R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
                   E  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +
Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388

Query: 433 HYS--VEDDAKAFFF 445
                     + +F 
Sbjct: 389 GLRTYDPSFPRLYFL 403


>gi|238759122|ref|ZP_04620291.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
 gi|238702670|gb|EEP95218.1| Type II/III secretion system protein [Yersinia aldovae ATCC 35236]
          Length = 354

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/381 (25%), Positives = 167/381 (43%), Gaps = 37/381 (9%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +   + + M+   +L+   I  +   ++    DSNI +  + D+ +L G   + +     
Sbjct: 1   MFNRNNQPMIKTVVLVNNIINLVYQRIKVEYPDSNIEINKIGDSYILTGQAESEEAKDTI 60

Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +    ++             N +   ++N + +   +QV +K+TIAEV +D  + IG 
Sbjct: 61  ASMVGEAVNNRREIKHKDQYLNNHNYLGIINKIKLPRPNQVNVKLTIAEVTKDFSENIGI 120

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             S  G S G  +                       +     T++HA+   +  R LAEP
Sbjct: 121 DWSSIGESVGSFQFL-------------------KFNASGISTLVHAINDDSIARILAEP 161

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L+ +SG+SASF  GG+        +  +T +    YG+ L  +  V    +I +++  E
Sbjct: 162 NLSVLSGESASFLVGGEIPLYNT--TQNSTIIKYKPYGIKLSISAKVNEHSKIRIKVDEE 219

Query: 336 VSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           VS              P+   RKA TT+EL  G + +L GL+    ++  + IP +  IP
Sbjct: 220 VSNIGKRFNVEGGNAYPTLETRKAATTLELADGESFILGGLITKSERESLKKIPFIGDIP 279

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF-FNRVNKI 451
           ILGA FRN++   ++TE+ + AT  LVKP+A  ++  PD  +      +  F F R+ ++
Sbjct: 280 ILGAFFRNAQTENKQTELVVVATVSLVKPLAGTEVELPD--FMNTSTLERLFNFTRIIEV 337

Query: 452 YGPKEASEVEGQNYKGAIGFI 472
              K A E   +      GFI
Sbjct: 338 KRKKVAKEFLRKG-----GFI 353


>gi|114321311|ref|YP_742994.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227705|gb|ABI57504.1| type II and III secretion system protein [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 428

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 96/414 (23%), Positives = 158/414 (38%), Gaps = 75/414 (18%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +       L  P  V  V V DP  AD+ +   R + L G + G  +V +      +   
Sbjct: 51  LDAGVHKRLTFPTRVTRVAVGDPDVADLEIIGDRELLLTGVDGGLTSVYVWTTCNDRPDR 110

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
             +++                   ++V     +              +  +L        
Sbjct: 111 TLVIVSAR--------------EALQVHEAEGS------------RDQVADL-------- 136

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                                  QV   + + EV R  L+++G        S+       
Sbjct: 137 ---------------------PMQVQADIRLVEVSRSKLREMGGSILGRRGSANFLFGGP 175

Query: 232 ADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
               G     G              F++        F ++++ALE      TLAEP+L A
Sbjct: 176 GSVSGSVAPGGVGDANVGLPASDSGFNIFYGGGGSRFLSMINALEANDFAYTLAEPSLVA 235

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SGQSA+F +GG+      SS +   ++   ++GV + FTPTV+   R+ L++  EVSE 
Sbjct: 236 LSGQSATFHAGGEFPVPVPSSGSDTINIRFKEFGVRVSFTPTVIDGDRLTLKVAPEVSEL 295

Query: 340 VIGVN----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                       +P  RVR+ DTTV L  G + V++GL+ + +    +  P L  IP+LG
Sbjct: 296 DDTSGIEIAGTRVPGLRVRRTDTTVTLGDGESFVISGLVSNHMASQVDKFPGLGNIPVLG 355

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSV--EDDAKAFFF 445
           A FR+SR + E+ E+ +  TP LV+P+A        P +          + FF 
Sbjct: 356 AFFRSSRVSEEDRELLMIVTPHLVQPLARDAEQPPLPGEDLRDYRPSWTEQFFL 409


>gi|320322730|gb|EFW78823.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320330485|gb|EFW86464.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 416

 Score =  215 bits (547), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 99/435 (22%), Positives = 158/435 (36%), Gaps = 75/435 (17%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           ++  A              + I       ++ PV +  + V DP  ADV V+      L 
Sbjct: 24  QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLT 83

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G   G  ++++                          R+ +             V + G 
Sbjct: 84  GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                             S        ++ ++            QV   +   EV R  L
Sbjct: 113 AT---------------ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKL 148

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
           KQ G      GS++    +     G                     F++           
Sbjct: 149 KQAGTSIFGKGSNNFLFGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLG 208

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+ALE +    TLA P+L A+SGQSASF +GG+      ++     S+   ++GV L  
Sbjct: 209 ILNALENSGFAYTLARPSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE        +    +P  R R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRNRILLKVAPEVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
                   E  P L  IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +
Sbjct: 329 NTSNISTVEKFPGLGDIPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388

Query: 433 HYS--VEDDAKAFFF 445
                     + +F 
Sbjct: 389 GLRTYDPSFPRLYFL 403


>gi|170696786|ref|ZP_02887895.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
 gi|170138302|gb|EDT06521.1| type II and III secretion system protein [Burkholderia graminis
           C4D1M]
          Length = 479

 Score =  214 bits (546), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 109/478 (22%), Positives = 183/478 (38%), Gaps = 47/478 (9%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
            L  +   ++  ++ +    G  +++ I +     L     ++ V + DP+ ADV++   
Sbjct: 9   GLTALLCGSSMAMSSASFAAGGAEQLDIAVGSQQSLAGGHTLRRVAIGDPSVADVLIIKG 68

Query: 85  RT---MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
                + L GK+ G  NV+L        L+  + +    A      +  +      V+++
Sbjct: 69  DKTGGVLLIGKSPGTTNVMLWEQGKDAPLSYVVNVSSPAA------KSLLGPGTPSVKVL 122

Query: 142 SDTVVLHGMVRTIQDSQRA---------VELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            DT ++ G   T++   RA            +       G    A S +    N    + 
Sbjct: 123 GDTALITGAAPTMEAHHRAAAAAEIEAHQRAALGGAGGIGTADGAKSGANGGPNGSANSA 182

Query: 193 ED--QVTLKVTIA------------EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            +  Q+    TIA            E  R +LKQ+G       +         +      
Sbjct: 183 SNNAQIYDTSTIATRSVVQVDVRVVEFSRTVLKQVGLNILKQNNGFTFGSFAPSALTSAT 242

Query: 239 VSEGGDFSVKGVLDRF----------SFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                 FS    +                  L  +E     R LAEPTL A+SGQSASF 
Sbjct: 243 YGPTPSFSSVAPISSAFNLVFNSATHGLFADLSLMESNNLARILAEPTLVALSGQSASFL 302

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVN 344
           +GG+     +    G TS+    YGV L  TPTVLSP RI L++  E S+      + ++
Sbjct: 303 AGGEIPVP-IPQGLGTTSIEYKPYGVGLTLTPTVLSPQRIALKVAPEASQLDFANAVTIS 361

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+   R+ DTTVEL  G + V+ GL+  +       +PLL  +P++GA F+   + 
Sbjct: 362 GVSVPAITTRRTDTTVELGDGESFVIGGLIDRETISNVAKVPLLGDLPVIGAFFKQLNYQ 421

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           + + E+ I  TP LV P+A             E      + + +  +     A     
Sbjct: 422 QNDKELVIIVTPHLVSPLAKGATLPATPGEQSEQRNAPVWRSLIGGVAARDAAPGFSK 479


>gi|254523433|ref|ZP_05135488.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
 gi|219721024|gb|EED39549.1| type II and III secretion system protein:Transport-associated
           [Stenotrophomonas sp. SKA14]
          Length = 433

 Score =  214 bits (545), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 100/445 (22%), Positives = 180/445 (40%), Gaps = 41/445 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNV 94
           ++ ++         + +   +     +P D++ V ++DP  AD+V+    R   L GK  
Sbjct: 2   LVLLAPATSVAADDLVLQAREQRPWSLPADLERVAIADPGVADIVMLRGQRQALLVGKAP 61

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   ++L      +   + + ++  +     T       S +         +L G   ++
Sbjct: 62  GTTTLLLWHRKQAEPQRVQVRVQSAVQGAANT-----GTSGLLFTQQDQQGLLQGSTDSV 116

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
               +  + +   L + G+   A++ S   +  + +   +            +  LKQIG
Sbjct: 117 LAHMQEQQTAAMALGKEGQLADASTVSSGGVVQVEVKVVE----------FNKTALKQIG 166

Query: 215 FQHSITGSSSGPSKSFAAD-----------------FGGKFVSEGGDFSVKGVLDRFSFE 257
                   S     +                                F +     +  + 
Sbjct: 167 ISFQNRNGSFAYGIARPGGQLPGNTGILPGMKEGESGNESTSPISSAFRLVFGSTKGLWN 226

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             +  L+     R LAEPTL A+SGQSASF +GG+          G T++T   +G+ L 
Sbjct: 227 ADVDLLQSNGMARVLAEPTLVALSGQSASFLAGGELP-ILEPQGLGTTTITYKPFGIGLT 285

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            TPTVL+P RI L++  E S+         N   +PS   R+ADTTVEL  G + V+ GL
Sbjct: 286 VTPTVLAPNRIALKVAPEASDLDYSNSIALNGVQIPSITTRRADTTVELGDGESFVIGGL 345

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR-DLSRPDD 432
           +  ++      IPLL  +PI+G+ FRN  + R++ E+ I  TP LV+P+A   +L  P  
Sbjct: 346 VSSNVVSSVNKIPLLGDLPIIGSFFRNFDYKRQDKELVIIVTPRLVQPLARNTELPLPGA 405

Query: 433 HYSVEDDAK--AFFFNRVNKIYGPK 455
             +  +  +  ++    +++   P 
Sbjct: 406 REAKPNLPEWGSWLLGPISQDPVPG 430


>gi|297568753|ref|YP_003690097.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924668|gb|ADH85478.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 406

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/441 (20%), Positives = 174/441 (39%), Gaps = 69/441 (15%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  L+R+    + +        +         ++   +           + +      ++
Sbjct: 1   MSILKRSVTHPLLLLTMCLAVLLPPGAVAAAPDSWRPD----------SLRLEAQSQHVI 50

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
                +  V V+DP+  +V + S + + L     G   + L   + +  +   +++    
Sbjct: 51  SRDQPIIRVAVADPSIMEVEMISQQELLLTALAPGATQLRLWHQETEPEMLRVVVVP--- 107

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                       D +I+V            +R ++ S+RA+  S   L +   +    ++
Sbjct: 108 -------AAPYQDYDIQVRA---------DIRVVEVSRRALRQSGVNLLKDSDSITVATT 151

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           +  V+  ++                                     +          FV 
Sbjct: 152 APGVLTGID-----------------------------------NQAAGLPLASDSGFVP 176

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F++     +     ++  LE      TLAEP+LT +SG++ASF +GG+        
Sbjct: 177 LAQAFNLVAGDAKQRLLGIISLLESNGFAYTLAEPSLTVMSGKTASFLAGGEVPIPVSHG 236

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
           ++G+ S+   D+GV L  TPTVL P RI + +  EVSE      +      +P +RVR+ 
Sbjct: 237 TSGSVSIEYRDFGVRLQLTPTVLDPRRITIEVSPEVSELDFSAAVSTAGVTVPGFRVRRT 296

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TTV+L  G + V++GL+ ++     E +P L  +PILGA F+++R    + E+ +  TP
Sbjct: 297 ETTVQLADGESFVISGLISNENASTVEKVPFLGSLPILGAFFKSTRLQSNDKELIMVVTP 356

Query: 417 FLVKPVAMRD-LSRPDDHYSV 436
            LV+P+     +  P +HY  
Sbjct: 357 HLVRPLERGAQVPLPGEHYRD 377


>gi|213968016|ref|ZP_03396162.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
 gi|301383668|ref|ZP_07232086.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059963|ref|ZP_07251504.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato K40]
 gi|302131629|ref|ZP_07257619.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213927359|gb|EEB60908.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato T1]
          Length = 419

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++  V +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGNDGFLLTGVAQGTTSLMVWT 96

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                     + +                           ++V      + +  +  +  
Sbjct: 97  TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                                          QV   +   EV R  LK+        GS+
Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                   G+F++           +L+A+E +    T
Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPT++   RI L+
Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P 
Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FR+S+  R E E+ +  TP LV+P+A+     S P +          +  
Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404

Query: 444 FFNRVN 449
           F  R N
Sbjct: 405 FMERGN 410


>gi|21673269|ref|NP_661334.1| type II secretion system protein [Chlorobium tepidum TLS]
 gi|21646357|gb|AAM71676.1| type II secretion system protein [Chlorobium tepidum TLS]
          Length = 445

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 116/446 (26%), Positives = 182/446 (40%), Gaps = 58/446 (13%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
           S+   +  + ++ V  + V V DP  AD ++ SP  +YL GK  G  N+I+ G +G    
Sbjct: 12  SVPEGESRVYRLAVPAKRVAVGDPAIADFIMISPSELYLSGKKTGATNLIVWGKNGNFTT 71

Query: 111 -----------------------------------------NLDILIERDIAHLEMTLRR 129
                                                    +  +  E  I  ++  L  
Sbjct: 72  APLVVSRNVKPIQDLLRAVLPKEHDIQLYSSGDALVLAGSVSNALAAETAIRLVKTFLGG 131

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            + D      +   +    G   +   S   +    +    SG    A+S     +NLL 
Sbjct: 132 TVPDVTPEATLTKKSEAATGT--SGGTSISGMTGVASAAGMSGAATVASSGIHGFINLLK 189

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           I    QV L+V IAEV +  ++ +GF       + G   +  +     FVS      +  
Sbjct: 190 IRDPQQVRLEVRIAEVSKSYMEALGFSW-----TQGVGSTAGSSLMTGFVSNATLNLLLK 244

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     + A  +   I+ LAEPT+ A+SGQ   F  GG+       +  GA     
Sbjct: 245 NSG----NLKVEADSQKNWIKMLAEPTIVAMSGQEGYFLVGGKIYTP-TPTGNGAVDYQE 299

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTTVELPSG 365
             YGV L FTPTVL  GRI L++  EVSEP     +      +P+++V  A TTVE+  G
Sbjct: 300 RTYGVGLRFTPTVLDAGRISLKVAPEVSEPDSQFQSAGSLYNLPAFKVSAASTTVEMNEG 359

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +V+ GLLKD + +  E +PLL ++P+LGALFR++  + E+ E+ +   P LVK     
Sbjct: 360 QNLVIGGLLKDKLTETIEAVPLLGQLPLLGALFRHTSMDSEKVEVIVIVRPTLVKASDTV 419

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKI 451
               P D +      + F   ++   
Sbjct: 420 P-ELPTDRFVPPGPNRLFLEGKLQGS 444


>gi|330873641|gb|EGH07790.1| type II/III secretion system protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 416

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 94/462 (20%), Positives = 162/462 (35%), Gaps = 76/462 (16%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67
            +  S+        V     +   +A   + S   +      + I       ++  V + 
Sbjct: 1   MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V DP  ADV V+      L G   G  ++++            + +           
Sbjct: 61  RIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                           ++V      + +                                
Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
                  QV   +   EV R  LK+        GS++    +     G            
Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   +F++           +L+A+E +    TLA P+L A++GQSASF +GG+   
Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
              +      S+   ++GV L  TPT++   RI L++  EVSE      I +    +P+ 
Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R E E+ 
Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365

Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNRVN 449
           +  TP LV+P+A+     S P +          +  F  R N
Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMERGN 407


>gi|28871966|ref|NP_794585.1| type II/III secretion system protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28855219|gb|AAO58280.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|331014708|gb|EGH94764.1| bacterial type II/III secretion system protein [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 419

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/426 (21%), Positives = 155/426 (36%), Gaps = 72/426 (16%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++  V +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAMEIDQGIQQNVRSSVAITRIAVGDPKIADVHVNGSDGFLLTGVAQGTTSLMVWT 96

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                     + +                           ++V      + +  +  +  
Sbjct: 97  TCASAPRQSMVFVRGRATA---------------------SMVERANAPSAEAHEAQL-- 133

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                                          QV   +   EV R  LK+        GS+
Sbjct: 134 -----------------------------PSQVQTDIRFVEVSRTRLKEASISIFGKGSN 164

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                   G+F++           +L+A+E +    T
Sbjct: 165 NFLFGAPGTVPGVTVTPGTVSGTLPSIPLNNGNFNIVWGGGSSKVLGMLNAMENSGYAYT 224

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPT++   RI L+
Sbjct: 225 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLK 284

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P 
Sbjct: 285 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPG 344

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FR+S+  R E E+ +  TP LV+P+A+     S P +          +  
Sbjct: 345 LGDIPILGAFFRSSQIQRNERELLMIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLL 404

Query: 444 FFNRVN 449
           F  R N
Sbjct: 405 FMERGN 410


>gi|119773845|ref|YP_926585.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
 gi|119766345|gb|ABL98915.1| putative type II and III secretion system outermembrane protein,
           secretin [Shewanella amazonensis SB2B]
          Length = 423

 Score =  214 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 167/420 (39%), Gaps = 36/420 (8%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
           + + + +  V + ++  +V+ V+V +       V   + + L G++ G +++ L   DG 
Sbjct: 12  QPLKLYVGAVELYKI-ANVERVVVGNGGVLSAKVLDEKNVILIGESEGLSDIQLWQKDGT 70

Query: 108 QMLNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
                 ++ + +      T++R +A+  +I V      +V+HG        +   ++ + 
Sbjct: 71  VRKLSVVVTKENAQTTVGTMKRMLAEFPSIEVTESDGVIVIHGEA-DASQRETLEKVLDG 129

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
             +     +Y                E  V ++V I E  +  L  IG Q     S    
Sbjct: 130 KDNILPLIKYVKYGKS---------IEPMVKMEVKIVEFNKSTLNNIGVQWENVMSGPAF 180

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-------------------FSFETVLHALERAT 267
             + A      F           +                          + +  L    
Sbjct: 181 GAAKAFTANPIFSVSSPGQYANSIGGAVSDAIGVLDTRGWSYFGIVTGIGSQIQLLAEKG 240

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             R LAEP LT  SG++ASF +GG+       S  G+  +   +YG+ L+  P V +   
Sbjct: 241 DARMLAEPNLTTRSGEAASFLAGGEIP-IRTVSGVGSVDIQYKEYGIRLNIEPVVDADNN 299

Query: 328 IGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           I  R+  EVS     +   G  P +  R+ ++ + + +  T+V++GL+  ++ ++    P
Sbjct: 300 IVSRVMAEVSAVDPSIQLEGSAPGFLTRRTESVINVKNKQTMVISGLVNSEMSKVVNKFP 359

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---MRDLSRPDDHYSVEDDAKAF 443
           LL  IPILG LF++  F  E+TE+ I  TP +V P      + LSR  +        +AF
Sbjct: 360 LLGDIPILGELFKSRNFREEKTELVIFVTPTVVYPGEDSHEKSLSRARELVDDAAKLEAF 419


>gi|330959995|gb|EGH60255.1| type II and III secretion system protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 416

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 93/466 (19%), Positives = 161/466 (34%), Gaps = 86/466 (18%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
             + I L + +       P   +  A +  +         + I       +  PV +  +
Sbjct: 12  RWLVILLTALSMDSVWAAPGSCSTLAAMPAA---------VEIDQGIQQNISSPVAITRI 62

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V DP  ADV V       L G   G  ++++            + +             
Sbjct: 63  AVGDPKIADVHVSGNDGFLLTGVAQGTTSLMVWTACSSAPRQSMVFVRGRAT-------- 114

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                                               + +  +           +V     
Sbjct: 115 -----------------------------------ASMVETASAPSGDAQLPSQV----- 134

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------- 242
                     +   EV R  LK+        GS++    +     G              
Sbjct: 135 -------QTDIRFVEVSRSKLKEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSATKPN 187

Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                 +F++           +L+A+E +    TLA P+L A++GQSASF +GG+     
Sbjct: 188 IPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPV 247

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRV 353
            +      S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +
Sbjct: 248 PNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNI 307

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ + 
Sbjct: 308 RRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMI 367

Query: 414 ATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
            TP LV+P+A      S P +          + +F      ++  G
Sbjct: 368 VTPHLVQPLAANAQLPSLPGEGLRNYDPSFPRLYFLESGDFDRRSG 413


>gi|330873797|gb|EGH07946.1| type II/III secretion system protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 384

 Score =  213 bits (541), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 98/421 (23%), Positives = 156/421 (37%), Gaps = 75/421 (17%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + I       ++ PV +  + V DP  ADV V+      L G   G  ++++     
Sbjct: 8   QRLVEIDQGIQQEVRSPVAIPRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW---- 63

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
                                R+ +             V + G                 
Sbjct: 64  --------------TACATAPRQSM-------------VFVRGRAT-------------- 82

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
             S        ++ ++            QV   +   EV R  LKQ G      GS++  
Sbjct: 83  -ASMVETVPAPSADAE---------LPSQVQTDIRFIEVSRTKLKQAGTSIFGKGSNNFL 132

Query: 227 SKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
             +     G                     F++           +L+ALE +    TLA 
Sbjct: 133 FGAPGTVPGVTVTPGTVSGALPSIPLAESAFNIVWGGGSSKVLGILNALENSGFAYTLAR 192

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P+L A+SGQSASF +GG+      ++     S+   ++GV L  TPTV+   RI L++  
Sbjct: 193 PSLVALSGQSASFLAGGEFPVPVPNTEGNGISIEYKEFGVRLTLTPTVVGRNRILLKVAP 252

Query: 335 EVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           EVSE        +    +P  R R+ DT++ L  G + V++GL+        E  P L  
Sbjct: 253 EVSELDFTSEISIAGTTVPIIRTRRTDTSIALADGESFVVSGLINTSNISTVEKFPGLGD 312

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFN 446
           IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +          + +F  
Sbjct: 313 IPILGAFFRSSKIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLYFLE 372

Query: 447 R 447
            
Sbjct: 373 N 373


>gi|264680618|ref|YP_003280528.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
 gi|262211134|gb|ACY35232.1| type II and III secretion system protein [Comamonas testosteroni
           CNB-2]
          Length = 454

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 109/432 (25%), Positives = 171/432 (39%), Gaps = 35/432 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            RTF       L   + SV   P + +           +    ++I + +     L +P 
Sbjct: 10  SRTFSLKPLYLLCGLSLSVVTAPVLAQQVPNTGESRAQQATAAREIKLVMGAQHELNLPG 69

Query: 65  DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            V+ + + D T A V +          + L     G  + ++      Q     + +++ 
Sbjct: 70  GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177
           +      LR   A S I  +         G +   Q + +A  V+LS   L  +      
Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDV 177

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                    +  +              +        GF   I G  S      ++  G  
Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGISGGSSTTGAA 226

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  F++    D+      +  LE     R LA PTL A+SGQSA+F SGG+     
Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
           V + TG  ++    YG+ L  +PTVLS  RI L++  E SE         N+  +PS   
Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ADTTVEL  G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I 
Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405

Query: 414 ATPFLVKPVAMR 425
            TP LVKP+A  
Sbjct: 406 VTPRLVKPLARD 417


>gi|221070074|ref|ZP_03546179.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
 gi|220715097|gb|EED70465.1| type II and III secretion system protein [Comamonas testosteroni
           KF-1]
          Length = 454

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 105/422 (24%), Positives = 168/422 (39%), Gaps = 35/422 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L   + S   +P + +           +    ++I + +     L +P  V+ + + D 
Sbjct: 20  LLCGLSLSAVTVPALAQQLPNAGESRAQQATAAREIKLVMGAQHELNLPGGVERIAIGDD 79

Query: 75  TKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
             A V +          + L     G  + ++      Q     + +++ +      LR 
Sbjct: 80  AIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQRVE-----LRT 134

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNL 187
             A S I  +         G +   Q + +A  V+LS   L  +               +
Sbjct: 135 AKASSLIEQQFA-------GELANAQSADKAKTVDLSSVQLKSNVVQVDVKVVEFNKTQM 187

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
             +              +        GF   I G  S  S   ++  G         F++
Sbjct: 188 KKVG-----------LNLFSTSPNGSGFSFGIFGRGSYGSSGGSSTTGATANPLTQAFNL 236

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D+      +  LE     R LA PTL A+SGQSA+F SGG+     V + TG  ++
Sbjct: 237 LMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP-VPAGTGLVAI 295

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADTTVELP 363
               YG+ L  +PTVLS  RI L++  E SE         N+  +PS   R+ADTTVEL 
Sbjct: 296 QYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATIPSITTRRADTTVELG 355

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I  TP LVKP+A
Sbjct: 356 DGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIVVTPRLVKPLA 415

Query: 424 MR 425
             
Sbjct: 416 RD 417


>gi|163856388|ref|YP_001630686.1| putative outer membrane protein [Bordetella petrii DSM 12804]
 gi|163260116|emb|CAP42417.1| putative outer membrane protein [Bordetella petrii]
          Length = 458

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 96/380 (25%), Positives = 160/380 (42%), Gaps = 25/380 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           +++ + +  +L+   +V  V V +      V    R + LF +  G ++V +    G   
Sbjct: 30  LTLEVGQTRVLR-HAEVTRVAVGNGQVVSAVSVDGREVVLFARQEGASSVHVWAPRGVAA 88

Query: 110 LNLDILIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                +     A ++  ++  +    N+R  +V   VVL G      D  R   L++ + 
Sbjct: 89  AYEVQVRPAGWALIQEEVQTLLRHIPNVRSSVVGGNVVLEGDDLADDDRARVAALAQRYP 148

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSG 225
                                +  ++ V L V + E+    L++ G Q    S  G  +G
Sbjct: 149 RILDFTG-------------QVGWDNMVLLDVQVVEIPSARLREFGLQWDALSQGGLHAG 195

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET------VLHALERATAIRTLAEPTLTA 279
                 +       ++    S++G+     F         L AL +      LA+P L A
Sbjct: 196 GVWQPGSSLQLADAAQPPALSMQGMGAAGYFGVNALLSARLAALAQRGEAVMLAQPQLLA 255

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            SG +ASF +GG+  Y T   + G +S     YGV L+ TP +   G I  RI+ E S  
Sbjct: 256 RSGTTASFLAGGEVPYSTT-DAQGNSSTEFKPYGVSLNITPRIDRNGAIRSRIEVEASSI 314

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              ++    P+ R R+A T   + SG T+VL G L  +    + G+P+L  IP+LGALF 
Sbjct: 315 DTSLSVAGGPALRTRRAVTEFNVRSGQTLVLGGFLSRERSHERSGLPVLQDIPLLGALFS 374

Query: 400 NSRFNREETEIFIAATPFLV 419
           + R   +ETE+ I  TP +V
Sbjct: 375 SRRDQHKETELAIFVTPRIV 394


>gi|302185189|ref|ZP_07261862.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae 642]
          Length = 416

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 92/422 (21%), Positives = 154/422 (36%), Gaps = 75/422 (17%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++  V +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                   R+ +             V + G   T          
Sbjct: 96  -----------------TACASAPRQSM-------------VFVRGRATTAMVESVTAPS 125

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ++  L                          QV   +   EV R  LK+        GS+
Sbjct: 126 ADAQL------------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                    +F++           +++A+E +    T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYT 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P 
Sbjct: 282 VAPEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPG 341

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDD--HYSVEDDAKAF 443
           L  IPILGA FR+S+  R+E E+ +  TP LV+P+A      S P +          + +
Sbjct: 342 LGDIPILGAFFRSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEALRTYDPSFPRLY 401

Query: 444 FF 445
           F 
Sbjct: 402 FL 403


>gi|118581113|ref|YP_902363.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118503823|gb|ABL00306.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 386

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 91/397 (22%), Positives = 154/397 (38%), Gaps = 54/397 (13%)

Query: 51  SIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            + +NK +++ +    + V +++P  AD+++ +PR + L G  +G  ++I+    G++ L
Sbjct: 33  QVIVNKSVLVNLKNPAERVSIANPAIADLLLITPRQIQLNGLALGATSLIVWEKGGEKPL 92

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
             D+ +  +                         +     V       +  + +   L  
Sbjct: 93  FFDVNVVGNTN-----------------------IDDSQQVLLQVKVAQIDKTALKNLGV 129

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
           S   +  N++                                IG   + + S+SG     
Sbjct: 130 SFLVKNQNANG---------------------------FSNMIGAPSTSSTSASGDGTIS 162

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      S    +++           V+ AL      + LAEP L   SGQ   F +G
Sbjct: 163 TANGIIDGFSSLNPYTMGITHFPSGVSAVIKALATKGMAKILAEPNLVVKSGQKGEFFAG 222

Query: 291 GQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT-EVSEPVIGVNAGD 347
            +  +     + ST   S+   + GV L+F P V+  G I L +   EVS     +    
Sbjct: 223 SRIPFSVLENTGSTSTPSIRWEEVGVKLNFKPFVMESGTIALELDPVEVSNIQGTLETNG 282

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R   T+ EL  G ++VLAGLL+D+  +    +PLL  IPILGALFR +   ++E
Sbjct: 283 YPVIDTRTIKTSAELRDGESLVLAGLLRDETYKSISKVPLLGDIPILGALFRTTENEQKE 342

Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDHYSVEDDAKAF 443
           TE+    TP LV P      +  P D     +  K F
Sbjct: 343 TELVFFITPKLVMPEVPGVKVELPTDKQLTPEQEKEF 379


>gi|330963438|gb|EGH63698.1| type II/III secretion system protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 416

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 93/460 (20%), Positives = 161/460 (35%), Gaps = 76/460 (16%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-ISIGLNKVIILQVPVDVQ 67
            +  S+        V     +   +A   + S   +      + I       ++  V + 
Sbjct: 1   MSCCSVPAIKPGLLVLLFTALSAPSAWAASGSCAGLAAMPAAMEIDQGIQQNVRSSVAIT 60

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V DP  ADV V+      L G   G  ++++            + +           
Sbjct: 61  RIAVGDPKIADVHVNGIDGFLLTGVAQGTTSLMVWTTCASAPRQSMVFVRGRATA----- 115

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                           ++V      + +                                
Sbjct: 116 ----------------SMVERADAPSAEA------------------------------- 128

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----- 242
                  QV   +   EV R  LK+        GS++    +     G            
Sbjct: 129 ---QLPSQVQTDIRFVEVSRTRLKEASISIFGKGSNNFLFGAPGTVPGVTVTPGTVSGTL 185

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   +F++           +L+A+E +    TLA P+L A++GQSASF +GG+   
Sbjct: 186 PSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPV 245

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSY 351
              +      S+   ++GV L  TPT++   RI L++  EVSE      I +    +P+ 
Sbjct: 246 PVPNGEGNGISIEYKEFGVRLTLTPTIVGRDRILLKVAPEVSELDFSAGITIAGTTVPAL 305

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R+ DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R E E+ 
Sbjct: 306 NIRRTDTSIALADGESFVVSGLISSSNVGAVDKFPGLGDIPILGAFFRSSQIQRNERELL 365

Query: 412 IAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFFNR 447
           +  TP LV+P+A+     S P +          +  F  R
Sbjct: 366 MIVTPHLVQPLAVNAQLPSLPGEGLRNYDPSFPRLLFMER 405


>gi|289625312|ref|ZP_06458266.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647837|ref|ZP_06479180.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867146|gb|EGH01855.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
 gi|330871034|gb|EGH05743.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 416

 Score =  210 bits (535), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 94/432 (21%), Positives = 157/432 (36%), Gaps = 77/432 (17%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++ PV +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                   R+ +             V + G       +     +
Sbjct: 96  -----------------TSCATAPRQSM-------------VFVRGRAT----ASMIESV 121

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +                              QV   +   EV R  LK+        GS+
Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                    +F++           +L+A+E +    T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P 
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401

Query: 444 FF--NRVNKIYG 453
           F      ++  G
Sbjct: 402 FLENGDFDRRDG 413


>gi|319795562|ref|YP_004157202.1| type II and iii secretion system protein [Variovorax paradoxus EPS]
 gi|315598025|gb|ADU39091.1| type II and III secretion system protein [Variovorax paradoxus EPS]
          Length = 533

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/423 (19%), Positives = 162/423 (38%), Gaps = 33/423 (7%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGK-GKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           P+      + EA    I      + +    +++ + +++++++P  V  V + +    + 
Sbjct: 67  PTTPPPQAVDEAELQRIAARATVMQRLPDSLTLYVGQMVLVKMPG-VARVAIGNGKVMEA 125

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD-SNIRV 138
            V     M +  ++ G + + +    G        +   D+  +   LR      S + +
Sbjct: 126 RVLDGANMLITAQDGGDSTLHVWDKSGGIRKVKVRVNVVDLDRIAGELREITRGISGVNI 185

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
             V + +++ G        +R   +++ +         A+           I  +  V +
Sbjct: 186 RRVGERIIMDGNSLDPAAVERLNTVAQLYAPAVVSLATAD----------RIRVDRMVDI 235

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSS-------------------GPSKSFAADFGGKFV 239
           +V I E  ++ L  +G +   +G                      G + + +   G   +
Sbjct: 236 QVRIVEFSKNALDDLGVRWQTSGDGFNFGLFSDIASSGSYRVLPDGSAFNTSTPQGTALL 295

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S+        +    +  + ++   +      LA P L+  SG  A + +GG+       
Sbjct: 296 SQNRRTPQAYLGIGLTLGSQINLQVQRGNAFLLASPNLSTRSGGEAKYLAGGEIPLP-AL 354

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           S+ GA SV    YGV L+  P     G I   I TEVS     V    +P   +R+ DT 
Sbjct: 355 STQGAGSVEFKPYGVRLNIKPIADGEGNISGSILTEVSSIDPSVAVQGIPGLLIRRTDTE 414

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             + +G TIVL+GLL  +  +  +G+P L   P++G  FR  +   +E E+ +  TP +V
Sbjct: 415 FNVKTGETIVLSGLLSRESSRASDGLPGLRNTPVIGRAFRADKDIDKEQEVVVFITPRVV 474

Query: 420 KPV 422
              
Sbjct: 475 DAA 477


>gi|104779900|ref|YP_606398.1| type II/IV secretion system protein D [Pseudomonas entomophila L48]
 gi|95108887|emb|CAK13583.1| Putative type II/IV secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 426

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 102/471 (21%), Positives = 173/471 (36%), Gaps = 97/471 (20%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
           +  + + L    P          A   +  +          I +       L++PV +  
Sbjct: 10  WLCLVVPLMLLMPQALATGKGCAAFDQMPTV----------IEMDQGLQQELRLPVAITR 59

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V +P  ADV     R + L G   G  +++L                           
Sbjct: 60  VAVGEPKVADVQASGERAVLLTGVGQGNTSLMLW------------------TDCAPKPH 101

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
           R +             V + G   +   ++ A++ +E                       
Sbjct: 102 RAM-------------VFIKGRA-SADMAEVALQATEQA--------------------- 126

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236
                 QV   +   EVRR   K+ G +    GS++    S                   
Sbjct: 127 --PLPTQVQADIRFVEVRRLKYKEAGAKLFFKGSNNSLFGSPGTVPNTVVRPGYVPGIQT 184

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                           +   F++        F  +++ALE +    TLA P+LT +SG +
Sbjct: 185 GTNPVTYADVRPGIPLDNDVFNIVWGGGSSRFLAMINALENSGFAYTLARPSLTVLSGLT 244

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---- 340
           ASF +GG+      SS +   S+   ++GV L  TPTV+S  RI L++  EVSE      
Sbjct: 245 ASFLAGGEIPIPVPSSGSDNVSIEYKEFGVRLALTPTVVSGNRINLKVAPEVSELDYNNA 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           + +    +P   VR+ DT++ L  G + +++GL+  +++   + +P L  +PI+GA FR 
Sbjct: 305 VVIAGTRVPGLSVRRTDTSITLADGESFIISGLITSNVRSGVDKMPGLGNLPIIGAFFRQ 364

Query: 401 SRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNR 447
           +  NREETE+ +  TP LV+P+A+       P +            FF   
Sbjct: 365 TALNREETELLMIVTPHLVQPLAVNAKLPELPGEGLRTYDPSWGHLFFMEN 415


>gi|330887974|gb|EGH20635.1| type II and III secretion system protein [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 416

 Score =  209 bits (531), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++ PV +  + V DP  ADV V+        G   G  ++++  
Sbjct: 37  AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLFTGVAQGTTSLMVW- 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                   R+ +             V + G       +     +
Sbjct: 96  -----------------TACATAPRQSM-------------VFVRGRAT----ASMIESV 121

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +                              QV   +   EV R  LK+        GS+
Sbjct: 122 TAPSADAEL--------------------PSQVQTDIRFIEVSRTKLKEASTSIFGKGSN 161

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                    +F++           +L+A+E +    T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P 
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401

Query: 444 FF--NRVNKIYG 453
           F      ++  G
Sbjct: 402 FLENGDFDRRDG 413


>gi|254515204|ref|ZP_05127265.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219677447|gb|EED33812.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 682

 Score =  209 bits (531), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 86/486 (17%), Positives = 166/486 (34%), Gaps = 72/486 (14%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+      +   L    P  A +     +NA +I+ S   I + + I   +++  + + 
Sbjct: 137 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSAANISRIRDIIERMDQSAVQET 196

Query: 63  PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113
            V      V++     +   +            + L        ++++ G + ++     
Sbjct: 197 DVIAMRYAVAEDVVRMLETLNATEAKNNGGEVDVLLVPDK-RTNSLLVSGDELQRARIRK 255

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++   D    +    + I     +   +++  VL  +++ I         +      +  
Sbjct: 256 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDGKAARSSGNTAT 313

Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
            +                  + + V+  L+I    QV ++  I E+     + +G Q   
Sbjct: 314 IEADEGTNSLIITADPDEMAAVESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 372

Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256
                  GSS   S + A +  G  +   GD         F                   
Sbjct: 373 ANDNGFYGSSINASDARARNIAGAILPPDGDGGSGATTGDFDVGNLAAALAGSAGLSLGW 432

Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302
                      +L+ALE  +    L+ P+L  +  + A  T G Q  + T S +      
Sbjct: 433 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNEEAFITVGQQVPFITGSFTNTGGNN 492

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354
                  ++   + G+ L  TP V     + L I+ EV+           A        R
Sbjct: 493 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 552

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K  T V    G  +VL GL+KDD+Q  ++ +P+L  IP LG LFRN   +  +T + I  
Sbjct: 553 KIRTKVLAEDGRIVVLGGLIKDDVQSTEQRVPILGDIPFLGRLFRNDAVSVSKTNLMIFI 612

Query: 415 TPFLVK 420
            P +++
Sbjct: 613 RPTIIR 618


>gi|88704137|ref|ZP_01101852.1| General secretion pathway protein D [Congregibacter litoralis KT71]
 gi|88701964|gb|EAQ99068.1| General secretion pathway protein D [Congregibacter litoralis KT71]
          Length = 696

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 89/486 (18%), Positives = 166/486 (34%), Gaps = 72/486 (14%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+      +   L    P  A +     +NA +I+ S   I + + I   +++  + + 
Sbjct: 151 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDSASNISRIQDIIERMDQSAVQET 210

Query: 63  PVDVQDVLVSDPTKADVVVHSPRT---------MYLFGKNVGQANVILIGHDGKQMLNLD 113
            V      V++     +   +            + L        +V++ G + ++     
Sbjct: 211 DVIALRYAVAEDVVRMLEKLNASEAKNNGGEVDVLLVPDK-RTNSVLVTGDELQRARIRS 269

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           ++   D    +    + I     +   +++  VL  +++ I         +    S +  
Sbjct: 270 LVAYVDTPLEQTGNVKVIYLEYAQATAIAE--VLTRVMQNINKLDTGDAKAARASSNTAT 327

Query: 174 NQYANS--------------SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
            +                  + + V+  L+I    QV ++  I E+     + +G Q   
Sbjct: 328 IEADEGTNSLIITADADEMAALESVITRLDIR-RAQVLVEAIIVELEVTDGQDLGLQWLF 386

Query: 218 ----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----------------- 256
                  GSS   S S A +  G  +    D         F                   
Sbjct: 387 ANDSGFYGSSINASDSRARNIAGAILPPDSDGGTGSTTGDFDVGNLAAALAGSAGLSLGW 446

Query: 257 ---------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----- 302
                      +L+ALE  +    L+ P+L  +  Q A  T G Q  + T S +      
Sbjct: 447 GVVGEDLSMTVILNALEEQSNANILSTPSLLTLDNQEAFITVGQQVPFITGSFTNTGGNN 506

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVR 354
                  ++   + G+ L  TP V     + L I+ EV+           A        R
Sbjct: 507 GAQNPFQTIERENVGITLTVTPQVNEGDSVVLEIEQEVNSLTGATLVASAAAADLITNER 566

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K  T V    G  +VL GL+KDD+Q  ++ +P+L  IP LG LFRN   +  +T + I  
Sbjct: 567 KIRTKVLAEDGRVVVLGGLIKDDVQSTEQRVPILGDIPYLGRLFRNDAVSVSKTNLMIFI 626

Query: 415 TPFLVK 420
            P +++
Sbjct: 627 RPTIIR 632


>gi|119477881|ref|ZP_01618004.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
 gi|119449042|gb|EAW30283.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2143]
          Length = 689

 Score =  208 bits (529), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 84/463 (18%), Positives = 171/463 (36%), Gaps = 58/463 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L    P    +     +NA +I+ +   I + +++   ++   + +  +   +   ++ 
Sbjct: 162 VLRPLVPQQGHMAAYGPSNAIIISDTMANINRIRQVIESIDLSAVEKTEIIPLEYASAEE 221

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
               +             +V +  ++        ++  D L  + +  L   L   +A S
Sbjct: 222 IVRMLQQLQKTESAKGQADVKKLTLVADKRTNSILVAGDELERQRLESLITHLDTPLAQS 281

Query: 135 -NIRV------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
            N++V      +    +VVL  + + ++      E +          +  + ++      
Sbjct: 282 GNVKVIYLKYADATELSVVLSKVAQNMERMSENNEKTRLAGKSEATIEADDGTNSLIVTA 341

Query: 183 ---------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                     V+  L+I    QV ++V I E+  +  + +G +      S G   S  + 
Sbjct: 342 EADTMQLLLAVVAKLDIR-RAQVQVEVIIVEMTDNDGRDLGVEWLFINDSGGYGASNNSG 400

Query: 234 FGGKFV-------------------------SEGGDFSVKGVLDRFSFETVLHALERATA 268
            G                             + G    +  + D  SF  V++AL++ + 
Sbjct: 401 LGSTIAGAAFETNNNGSSVDARGGIAEAIGGAAGQVLGIGRLDDDLSFNVVVNALQQNSE 460

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318
              L+ P+L  +  + ASF  G    + T S +              +V   + G+ L  
Sbjct: 461 ANILSTPSLLTLDNEEASFVVGQSIPFVTGSYTATGSSSSNPDNPFQTVERENVGITLRV 520

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           TP +     + L I  EVS  +         P    RK +TT+   +G TIVL GL++D+
Sbjct: 521 TPQINEGDSLILAISQEVSNVIGTSTILNSNPITSERKIETTILADNGQTIVLGGLIEDN 580

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           I +  + +P+L  IP LG LFR++  +  +  + I   P +V+
Sbjct: 581 ITESIQKVPILGDIPFLGRLFRSTSTSVGKKNLLIFLRPTIVR 623


>gi|330811024|ref|YP_004355486.1| type II secretion system protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379132|gb|AEA70482.1| putative type II secretion system protein [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 407

 Score =  208 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 91/410 (22%), Positives = 150/410 (36%), Gaps = 70/410 (17%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
              +G      L++   V  + V DP  ADV         L G   G  ++++     K 
Sbjct: 42  TFEVGQGLQSELRILAPVTKLAVGDPKIADVQPSGNDAFILTGLAPGATSLMVWTDCSKI 101

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                + ++                             L G      +    +       
Sbjct: 102 PRQSMVFVKGRATEA-----------------------LTGAASIPSEDPMLLA------ 132

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-----IGFQHSITGSS 223
                                     QV   +   EV R  LK+      G + +    S
Sbjct: 133 --------------------------QVQTDIRFVEVSRTKLKEASTSIFGTRGNFLFGS 166

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                +               F++     +     +++ALE +    TLA P+L A+SGQ
Sbjct: 167 PRTLPTVGGIVRPSLPVNNDMFNLSFATGKTLL--MINALEGSGFAYTLARPSLVALSGQ 224

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
           SASF +GG+      S+ +   S+   ++G+ L  TPTV+   RI L++  EVSE     
Sbjct: 225 SASFLAGGEVPIPVPSAGSDNVSIEYKEFGIRLTLTPTVIGKNRIALKVAPEVSELDFTN 284

Query: 343 ---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    +P+  VR+ DT++ L  G + V++GL+           P L  IPILGA FR
Sbjct: 285 AVNIAGTLVPALTVRRTDTSIALADGESFVISGLISTRNSSQVNKFPGLGDIPILGAFFR 344

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445
           ++  NREE E+ +  TP LV+P+A      + P +       +  + +F 
Sbjct: 345 DNSINREERELLMIVTPHLVQPLAADAQLPTLPGEQLRNYDPNFYRMYFL 394


>gi|238796996|ref|ZP_04640500.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
 gi|238719256|gb|EEQ11068.1| Type II/III secretion system protein [Yersinia mollaretii ATCC
           43969]
          Length = 340

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 156/339 (46%), Gaps = 31/339 (9%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           ++   I      +     DS+I ++ + D+ +L G V + ++      L    +      
Sbjct: 1   MVNDIINATNKRIIAEYPDSHIEIDKIGDSYILTGEVESEEEKDTIATLVGEAIGSKKEE 60

Query: 175 QY-----ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                         ++N + +   +QV +K+TIAEV +D  + +G   S  G + G  + 
Sbjct: 61  SGKGQYFNTPYYSNIINKIKLPQSNQVNVKLTIAEVTKDFSENVGVDWSTAGDAVGSFQF 120

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                                 +     T++HA+   +  R LAEP L+ +SG+SASF  
Sbjct: 121 I-------------------RFNAKGISTLVHAINDDSIARILAEPNLSVLSGESASFLV 161

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AG 346
           GG+    +   +  + +V+  ++G+ L+    V    RI + I  EVS      N     
Sbjct: 162 GGEIPIIST--TENSRTVSYKEFGIKLNIGAKVNEKKRIRIHINEEVSSIGKTFNIEGGD 219

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS R RKA+TT+EL  G + +L GL+    ++  + IPL+  IPILGALFRN++  + 
Sbjct: 220 SIPSLRTRKAETTLELGDGESFILGGLISHTERESLKKIPLIGDIPILGALFRNAQTEQN 279

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           +TE+ + AT  LVK V+ +++  PD  +      + FF 
Sbjct: 280 QTELVVIATVNLVKSVSKKEVELPD--FMHTSTLERFFN 316


>gi|257483347|ref|ZP_05637388.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|331012566|gb|EGH92622.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 416

 Score =  206 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 92/432 (21%), Positives = 155/432 (35%), Gaps = 77/432 (17%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++ PV +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                   R+ +             V + G              
Sbjct: 96  -----------------TACATAPRQSM-------------VFVRGRAT----------- 114

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
             + +              +V               +   EV R  LK+        GS+
Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                    +F++           +L+A+E +     
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYI 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P 
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401

Query: 444 FF--NRVNKIYG 453
           F      ++  G
Sbjct: 402 FLENGDFDRRDG 413


>gi|311105392|ref|YP_003978245.1| type II and III secretion system family protein 1 [Achromobacter
           xylosoxidans A8]
 gi|310760081|gb|ADP15530.1| bacterial type II and III secretion system family protein 1
           [Achromobacter xylosoxidans A8]
          Length = 456

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 87/475 (18%), Positives = 167/475 (35%), Gaps = 57/475 (12%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R   ++ +  L   +P+                         ++I + + +  IL  P
Sbjct: 1   MRRAVASIFAWALCLVSPAAWP--------------------ADEEIELQVGETRILSHP 40

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V+ V + +      +    R + +F +  G +++ +  +  +       ++      L
Sbjct: 41  G-VKRVAIGNGQVIGAIEAEGREVIVFARAEGVSSLHVWANGARAKAYELRVVPAGAPRL 99

Query: 124 EMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              +   +A     R   V   +++ G   +  D  R   L++ + +             
Sbjct: 100 RAEVEALLARIPGARSTEVGGRILIEGDDLSDDDRLRITALADRYPAVLDFTG------- 152

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
                  +  +  V L V + E+    L+ +G +             ++ A   G+    
Sbjct: 153 ------QVGWDRMVQLDVQVVEIPTSKLRDLGVRWDGMSQGGINAGLAWDAGSRGRVSRP 206

Query: 242 G---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           G                        + +  L ++     LA+P L A SG SA+F +GG+
Sbjct: 207 GEEIIETMGRVSSPAGYFGVNALLSSRIAMLAQSGEAVMLAQPQLLARSGASATFLAGGE 266

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             Y +  +   +T++    YGV+L  TP V   G I   I+ E S     ++    P+ R
Sbjct: 267 VPYSSTDTRGNSTTL-FKPYGVMLRITPRVDRNGIIRSLIEVEASSVDNALSVPGGPALR 325

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A T   + SG T+V+ G L  +  +  +G+P L  IP+LGALF + R+   ETE+ I
Sbjct: 326 TRRASTEFNVRSGDTLVIGGFLSRERDEASDGLPWLKDIPVLGALFSSRRYQLRETELAI 385

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
             TP L+            D               +   +              G
Sbjct: 386 FVTPKLIAQAEPAM----ADRVRRG-------RGVLEAAFPEAPRLGTAVPAASG 429


>gi|258624763|ref|ZP_05719694.1| Flp pilus assembly protein [Vibrio mimicus VM603]
 gi|258582925|gb|EEW07743.1| Flp pilus assembly protein [Vibrio mimicus VM603]
          Length = 347

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 94/366 (25%), Positives = 149/366 (40%), Gaps = 42/366 (11%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ------------ 170
           L+ TL     D +I V  V D VVL G V + +   +   L    L +            
Sbjct: 2   LKQTLIARFPDESISVSNVGDQVVLDGTVSSEEVKYKIYRLVGEMLKKNVSKVNNHVIET 61

Query: 171 ------SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                       A      V+N L +   +Q+ +K+TIAEV    L ++G  +   G   
Sbjct: 62  GENNREEALQYTATYVYDGVINNLKVLTTEQINVKLTIAEVSSSFLSELGVSYGDIGGGD 121

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                            G  ++            ++ A       + LAEP L+ ISG++
Sbjct: 122 ----------------VGKFYNKLLDFTAQDIVAIIAASGNDDIGQVLAEPNLSVISGET 165

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--- 341
           ASF  GG+         T   ++   +YG+ L     V     I L +  EVS       
Sbjct: 166 ASFLVGGEIPLAIKEDDT--YTIHYKEYGIKLSMVAKVTDSENIRLSLLPEVSSLDSVNR 223

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              ++ + PS + RKA TTV+L  G + VLAGLL  + ++    IP+L  IPILGALF +
Sbjct: 224 SDNSSYNFPSLKTRKAQTTVQLKDGQSFVLAGLLTTEERESLRKIPILGDIPILGALFSS 283

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEV 460
           ++ +R++TE+ I AT  LV PV    +  P   +    D +      ++ +  P+    +
Sbjct: 284 TKSDRKKTELIIVATVNLVDPVKTEQVKLPA--FKKTSDLERLLRIDLSGVDEPELQRTI 341

Query: 461 EGQNYK 466
               + 
Sbjct: 342 NAGGFN 347


>gi|298488959|ref|ZP_07006982.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156457|gb|EFH97554.1| Flp pilus assembly protein CpaC [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 416

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 93/445 (20%), Positives = 158/445 (35%), Gaps = 77/445 (17%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
           ++  A              + I       ++ PV +  + V  P  ADV V+      L 
Sbjct: 24  QSAWAASGSCAGLAAMPAAVEIDQGIQQEVRSPVAITRIAVGAPKIADVHVNGTDGFLLT 83

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G   G  ++++                          R+ +             V + G 
Sbjct: 84  GVAQGTTSLMVW------------------TACATAPRQSM-------------VFVRGR 112

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                          + +              +V               +   EV R  L
Sbjct: 113 AT------------ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKL 148

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFET 258
           K+        GS++    +     G                    +F++           
Sbjct: 149 KEASTSIFGKGSNNFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLA 208

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           +L+A+E +    TLA P+L A++GQSASF +GG+      +      S+   ++GV L  
Sbjct: 209 MLNAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTL 268

Query: 319 TPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           TPTV+   RI L++  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+
Sbjct: 269 TPTVVGRDRILLKVAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLI 328

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDD 432
                      P L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +
Sbjct: 329 SSSNVGSVSKFPGLGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGE 388

Query: 433 HYS--VEDDAKAFFF--NRVNKIYG 453
                     + +F      ++  G
Sbjct: 389 GLRTYDPSFPRLYFLENGDFDRRDG 413


>gi|186473164|ref|YP_001860506.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
 gi|184195496|gb|ACC73460.1| type II and III secretion system protein [Burkholderia phymatum
           STM815]
          Length = 451

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 89/424 (20%), Positives = 167/424 (39%), Gaps = 21/424 (4%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
                 S  LF    +         +    ++    +      + +   +V +L VP  +
Sbjct: 9   ALRCFASAALFMGVLAAGASAADATSAQRGVDADAAQNAA--VLDLYKGEVRMLNVPGTI 66

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + + + +       V   R + L  ++ G  ++++    G  +     + + D+      
Sbjct: 67  KRIAIGNGKLLTANVVDGR-VMLLAESAGITSLVVWNERGVALQTTVRVAKGDVGMSAAQ 125

Query: 127 LRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
           LR  +A    +RV+ V   +VL G V   + +     +++              + KK +
Sbjct: 126 LRSVLAAVPGVRVQEVGPNIVLAGSVHREKAAAVKAAIADMTNVIDTTTIDEGDALKKTL 185

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           +            KV I EV R   K IG       +    S      F G   + G +F
Sbjct: 186 HF-----------KVQIMEVTRTGQKDIGIAWDSQFAGPQVSGQ---GFIGSGAASGANF 231

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            + G+    +  + ++          LA P L   SG +ASF +GG+        + G T
Sbjct: 232 FLAGIAS--TITSRINFAINNGDAFILAAPELNTKSGGTASFLAGGEVPIPKA-GALGTT 288

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            V    YG+ L+  P V +   I   +QTE+S+    V+ G  P +  R A + + L +G
Sbjct: 289 DVEYKPYGIRLNIRPVVDANDIISATVQTEISQIDPSVSYGGFPGFLTRSASSDISLRAG 348

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            TI ++GL+  D      G+P  +++PI+G LFR+  F  + +++ I  TP + +P    
Sbjct: 349 ETIAISGLVSADALNGSAGMPFFARLPIIGQLFRSDSFRAKNSDLVIFVTPLISEPSGEP 408

Query: 426 DLSR 429
           + + 
Sbjct: 409 NTAL 412


>gi|330989176|gb|EGH87279.1| type II and III secretion system protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 416

 Score =  205 bits (521), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 93/432 (21%), Positives = 156/432 (36%), Gaps = 77/432 (17%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++ PV +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 37  AAMPAAVEIDQGIQQEVRSPVAITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVW- 95

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                   R+ +             V + G              
Sbjct: 96  -----------------TACATAPRQSM-------------VFVRGRAT----------- 114

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
             + +              +V               +   EV R  LK+        GS+
Sbjct: 115 -ASMIESVTAPSADAELPSQV------------QTDIRFIEVSRTKLKEASTSIFGKGSN 161

Query: 224 SGPSKSFAADFGGKFVSEG------------GDFSVKGVLDRFSFETVLHALERATAIRT 271
           +    +     G                    +F++           +L+A+E +    T
Sbjct: 162 NFLFGAPGTVPGVNVTPGTVSGTRPSIPLNNSNFNIVWGGGSSKVLGMLNAMENSGYAYT 221

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L+
Sbjct: 222 LARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLK 281

Query: 332 IQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           +  EVSE      I +   ++P+  +R+ DT++ L  G + V++GL+           P 
Sbjct: 282 VAPEVSELDFSAGITIAGTNVPALNIRRTDTSIALADGESFVVSGLISSSNVGSVGKFPG 341

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAF 443
           L  IPILGA FRNS+  R+E E+ +  TP LV+P+A      S P +          + +
Sbjct: 342 LGDIPILGAFFRNSQIQRDERELLMIVTPHLVQPLAANAQLPSLPGEGLRTYDPSFPRLY 401

Query: 444 FF--NRVNKIYG 453
           F      ++  G
Sbjct: 402 FLENGDFDRRDG 413


>gi|291279644|ref|YP_003496479.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
 gi|290754346|dbj|BAI80723.1| type IV pilus assembly protein PilQ [Deferribacter desulfuricans
           SSM1]
          Length = 406

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 57/262 (21%), Positives = 110/262 (41%), Gaps = 16/262 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------- 224
              +      K  ++ +++  + QV ++  I EV +   +++G Q S   + +       
Sbjct: 147 TDTKENIEKMKYYISKIDVPIK-QVMIEAKIVEVSKTGSRELGLQWSANTNINSTNKYFP 205

Query: 225 ------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                 G +  +  +             +      F  +  L ALE+    + +++P + 
Sbjct: 206 NTISIGGDTSGYMVNLPITNPGGTLSLLLGNYSGSFILDAKLQALEQQGLAKIVSQPKIV 265

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            ++ + A   SG +  YK +      T V + +  + L  TP V     I L+I  + SE
Sbjct: 266 TMNNKEAKIESGFEFHYKVIDD--DDTDVESDEAKLSLTVTPQVTPDNNILLKIVVDKSE 323

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P    RKA+T V+L  G T V+ GL+++        +P LSKIP++G LF
Sbjct: 324 LDFSKTVDGYPLKFTRKAETYVKLKDGETTVIGGLVQEKQSNSTSAVPGLSKIPLIGWLF 383

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           ++   + +  ++ I  TP ++K
Sbjct: 384 KSKTNSHDLNDLVIFITPKIIK 405


>gi|327541686|gb|EGF28210.1| bacterial type II/III secretion system protein [Rhodopirellula
           baltica WH47]
          Length = 454

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 94/338 (27%), Positives = 154/338 (45%), Gaps = 29/338 (8%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           +   +  +++RV  + ++ ++ G V ++ D  +AV ++E F +              V+N
Sbjct: 1   MNSQLPLASLRVTPIGESAIISGYVTSVDDVDKAVAITEQFYTT-------------VIN 47

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----GPSKSFAADFG-----GK 237
            + + G  QV L   I EV R  L+++G   +I   +     GPS       G       
Sbjct: 48  NIQVVGIQQVLLHTKIMEVSRTKLRELGVDLAILDDNFTLLNGPSGVLDVGAGIVEGDAG 107

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           F       +        +FET+++AL      + LAEPT+ A  G+ A FT GG+     
Sbjct: 108 FGPIPLGDTNLRFNVNGNFETLINALHEQRLTKLLAEPTVVATHGRPARFTVGGRIP-TI 166

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGDMPSYRV 353
           V    G   +T  DYG  + F P V+ PGRI L ++ EVSEP       VN  ++ ++  
Sbjct: 167 VPGQNGQVQITYEDYGTSIDFLPFVVGPGRIRLEVRPEVSEPDPSRAVTVNGTNVTAFTT 226

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +T VE+ +G T  LAGLL+   +      P    +P +G LFR  +  R E E+ I 
Sbjct: 227 RYVETAVEMQAGQTFALAGLLQSRTESTTSRTPFFGSLPYVGTLFRKMQERRNEIELLIL 286

Query: 414 ATPFLVKPVAMRDLSR--PDDHYSVEDDAKAFFFNRVN 449
            TP LV+ +   ++ R  P  +    DD + + +  + 
Sbjct: 287 VTPELVEAMDPHEVPRGGPGMNSHSPDDKEFYLYGHIE 324


>gi|299532819|ref|ZP_07046206.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
 gi|298719043|gb|EFI60013.1| type II and III secretion system protein [Comamonas testosteroni
           S44]
          Length = 454

 Score =  204 bits (519), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 110/432 (25%), Positives = 174/432 (40%), Gaps = 35/432 (8%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            RTF       L S + SV  +P + +           +    ++I + +     L +P 
Sbjct: 10  SRTFSLKSLYLLCSLSLSVVTVPALAQQVPNAGESRAQQATAAREIKLVMGAQHELNLPG 69

Query: 65  DVQDVLVSDPTKADVVVHSPRT-----MYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
            V+ + + D T A V +          + L     G  + ++      Q     + +++ 
Sbjct: 70  GVERIAIGDDTIAAVHIKRAGKGAAAKILLSPLKPGSTSFMVWPRGEAQAQTYMLNVQQR 129

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYA 177
           +      LR   A S I  +         G +   Q + +A  V+LS   L  +      
Sbjct: 130 VE-----LRTAKASSLIEQQFA-------GELANAQLADKAKTVDLSSVQLKSNVVQVDV 177

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                    +  +              +        GF   I G  S  +   ++  G  
Sbjct: 178 KVVEFNKTQMKKVG-----------LNLFSTAPNSSGFSFGIFGRGSYGTGGGSSTTGAA 226

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  F++    D+      +  LE     R LA PTL A+SGQSA+F SGG+     
Sbjct: 227 ANPLTQAFNLLMQFDKAGIGVNIGMLEGNNLARVLAAPTLVALSGQSANFLSGGEVPVP- 285

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRV 353
           V + TG  ++    YG+ L  +PTVLS  RI L++  E SE         N+  +PS   
Sbjct: 286 VPAGTGMVAIQYKPYGIGLTVSPTVLSNDRIVLKVAPEASELDYANTIVLNSATVPSITT 345

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+ADTTVEL  G + V+ GL+  +     + +PLL  IPILG LF+   F ++E+E+ I 
Sbjct: 346 RRADTTVELGDGESFVIGGLVSRNTTSGTDKVPLLGDIPILGVLFKRQEFQQKESELAIV 405

Query: 414 ATPFLVKPVAMR 425
            TP LVKP+A  
Sbjct: 406 VTPRLVKPLARD 417


>gi|85859832|ref|YP_462034.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85722923|gb|ABC77866.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 717

 Score =  204 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 63/264 (23%), Positives = 110/264 (41%), Gaps = 16/264 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L++    QV ++ TI E+      + G +  I  S  G S +            G
Sbjct: 452 NLLQALDVPAR-QVLIEATIVELTLTDELKYGVEWFIRNSWDGDSYTLGTLGKLGLEPLG 510

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--- 299
             ++         FE ++ AL   +    L+ P L  +    A+   G      T     
Sbjct: 511 LTYAFLSRTG--QFEALISALAEKSKANILSTPRLMVLDNMEATIQVGKDVPTVTGQIST 568

Query: 300 --------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
                   S++ + S+     GV+L   PT+ + G + L I  EVS+       GD P  
Sbjct: 569 LDSVNTTDSTSVSQSIQYRSTGVMLKVKPTINTEGLMTLEITQEVSDIAETPGVGDSPII 628

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ +T++    G TIVL GL++++    +  +PLL  IPILG LF+ +   +++TE+ 
Sbjct: 629 LTRRINTSIIAAHGQTIVLGGLMQENQSLGESKVPLLGDIPILGNLFKATSKTKDKTELL 688

Query: 412 IAATPFLVKPVAMRDLSRPDDHYS 435
           +  TP ++      D  +  D   
Sbjct: 689 VLVTPTIL--TDPNDAVKITDQLR 710


>gi|87120710|ref|ZP_01076603.1| general secretion pathway protein D [Marinomonas sp. MED121]
 gi|86163938|gb|EAQ65210.1| general secretion pathway protein D [Marinomonas sp. MED121]
          Length = 616

 Score =  203 bits (517), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 167/459 (36%), Gaps = 35/459 (7%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++      +   L    P    L  +   NA +I+     I   + +   L+  I  ++ 
Sbjct: 131 IKNAVAAELVPILRPLIPQYGHLAAVPTMNALIISDHADNIRSLEDLVERLDSTIEGEMA 190

Query: 64  VDVQDVLVSDPTKADVVVH---------SPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
           V       +      +                +     +     +IL G  G+     D+
Sbjct: 191 VIPLKHAWAGDVITLLQELTTTTTGKGARSSDVTTIVADERTNRLILKGKPGELNQIKDL 250

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           +I+ DI   + +  ++I         V+D  +L G+V  I+  +      ET +      
Sbjct: 251 IIKLDIPAEKTSRLQYIPLQYADATKVAD--LLKGVVGDIEKKEGNAPTLETNIQADEDL 308

Query: 175 QYANSSSKK--------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------- 217
                +S+         V+  +++    QV ++  I E+     +++G Q          
Sbjct: 309 NALLVNSEPGVMSEIYSVLKQIDVP-RAQVLIEAVIVEITVTDEEELGVQWLIGGSDEII 367

Query: 218 -SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                +S+G S +  A       +         +L   +F  ++ AL+  T    L+ P 
Sbjct: 368 SGTNFTSAGSSANTIASSINSSTANTLATGGTAILGDTNFGAIIQALQSKTNSNLLSTPK 427

Query: 277 LTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  +  Q A    G    ++T      S +   + +  D G+ L  TP + S   + + +
Sbjct: 428 ILTLDNQEARILVGETRPFQTGEYSEDSDSTFVTTSREDVGLTLKVTPHINSGNEVKMEV 487

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
              V       +        VR+ +T V      TIVL GL++D+I + K+ +P L  +P
Sbjct: 488 FQTVESASDEASDLGT-ITTVREVETVVIAGDRQTIVLGGLIQDNITESKQKVPFLGDLP 546

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            +G LFR+S F+ ++  + +   P +++  A  D     
Sbjct: 547 FVGGLFRSSSFSIDKKNLLVFIRPTIIRGKAKADQITNT 585


>gi|119505085|ref|ZP_01627161.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
 gi|119459067|gb|EAW40166.1| Helix-turn-helix, AraC type [marine gamma proteobacterium HTCC2080]
          Length = 696

 Score =  202 bits (514), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 91/476 (19%), Positives = 163/476 (34%), Gaps = 59/476 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+      +   L    P  A +     +NA +I+     I +  +I   +++  I   
Sbjct: 155 RLENISAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIASNIRRIVEIIDRMDRSAIQGT 214

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V      V++     +     ++     ++  +  ++        ++  D L  + I  
Sbjct: 215 QVIKLRYAVAEDVVQMLQTLEKQSRGDGAESNDEVTLVADKRTNSVVVTADELNSQRILD 274

Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQR-------------AVE 162
           L   L   +  S N++V      + V    VL  +++ +                     
Sbjct: 275 LVTYLDTPLEQSGNVKVVYLEYADAVEVAEVLTRVMQNMSRLDTGGDRKPSTNTNSTIEA 334

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
              T       +    +S + V+  L+I    QV ++  I E+     +++G Q      
Sbjct: 335 DEGTNALIITADADEMASLEAVIARLDIR-RAQVLVEAIIVEMEITEGQELGLQWIFADD 393

Query: 223 SSGPSKSFAADF-----------------------------GGKFVSEGGDFSVKGVLDR 253
           S     + +                                G      G       V D 
Sbjct: 394 SGAFGSNVSTSSAQQQRNAAIGNALLGDENSNADIGVRDLAGALSQVPGTTLGWGVVGDD 453

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304
            S   +L+ALE       L+ P+L  +  Q A  T G    + T S S            
Sbjct: 454 LSMSVILNALETQGNANILSTPSLLTLDNQEAYITVGQNVPFVTGSYSNTGGASNVQNPF 513

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            ++   + G+ L  TP V     + L I  EVS     + A        RK +T V    
Sbjct: 514 QTIERENVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLAAADVITNERKIETKVMAQD 573

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G  +VL GL+KDD+Q  ++G+P L  IP+LG LFRN   +  ++ + +   P +V+
Sbjct: 574 GDVVVLGGLVKDDVQDSQQGVPFLQDIPLLGRLFRNDVVSVTKSNLLVFIRPTIVR 629


>gi|170720034|ref|YP_001747722.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169758037|gb|ACA71353.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 419

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/470 (21%), Positives = 175/470 (37%), Gaps = 87/470 (18%)

Query: 2   RYLQRTFFTMMSIFLF--SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
           R   + FF++  + L   +  P+        EA A + ++ +++ G  +++ + L     
Sbjct: 6   RCSSKRFFSLACLALLTVALLPNAHGASKGCEAFAQLPSVIEIDQGLQQELRLPL----- 60

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
                 +    V DP  ADV     R +           V  +G     ++         
Sbjct: 61  -----AITRAAVGDPKVADVQPSGDRAVL----------VTAVGQGNTTLMLWTACAPGP 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              +                     + + G                            + 
Sbjct: 106 HRAM---------------------LFVKGQASAAMA---------------ETGLPPSL 129

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
             +            QV   +   EVRR   K+ G +   +GS++    S     G    
Sbjct: 130 DPE---------LPSQVQADIRFVEVRRTKYKEAGARLFFSGSNNSLIGSPGTVPGTSVT 180

Query: 240 S------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                          G F++        F   ++ALE +    TLA P+LT +SG +ASF
Sbjct: 181 PGAVPVTSPQIPLNNGVFNIVWGGGSSRFLAAINALENSGFAYTLARPSLTVLSGLTASF 240

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGV 343
            +GG+      S+ +   S+   ++GV L  TPTV+S  RI L++  EVSE      + +
Sbjct: 241 LAGGEIPIPVPSAGSDNFSIEYKEFGVRLALTPTVISRDRITLKVAPEVSELDYTNAVTI 300

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P   +R+ DT++ L  G + +++GL+ ++ +   + +P L  +PILGA FR S  
Sbjct: 301 GGTSVPGLSIRRTDTSISLADGESFIISGLVGNNTRSAVDKLPGLGNLPILGAFFRQSAL 360

Query: 404 NREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
            REETE+ +  TP LV+P+A        P +          + FF    N
Sbjct: 361 VREETELLMIVTPHLVQPLAANARLPELPGEGLRTYDPSWGRLFFMENGN 410


>gi|163801327|ref|ZP_02195226.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
 gi|159174816|gb|EDP59616.1| hypothetical Flp pilus assembly protein [Vibrio sp. AND4]
          Length = 416

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 74/366 (20%), Positives = 137/366 (37%), Gaps = 40/366 (10%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +N+   L +    +D++V      DV +     +YL     G+  VI+ G +    
Sbjct: 37  INMSVNETKHLPLSYVPKDIVVGSDKVVDVNLADSNNLYLIAHEAGKTKVIVKGEEETTE 96

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             + +       H           +++    V++ + ++G V+   + +   +L    +S
Sbjct: 97  YVIQVRDTDKDTHNLNKFLESAGYTDVEAVKVAEKIYINGAVKDKVEKRELNKLVRNAIS 156

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
           +              ++   I    QV + +T+AEV + I  ++G               
Sbjct: 157 RY------------YVDNTTITENRQVRINLTMAEVSKSIDDELGITW------------ 192

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                       G  +S    +   S    +  L R      L  P++   +G +A+F +
Sbjct: 193 ------------GAGWSKIDGVTSKSLSATIGLLSRNNLATVLTRPSIIVTNGSTATFEA 240

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
           GG+    T         V   DYG+ L F P +     I LR     S+    +     D
Sbjct: 241 GGEVPVLTYDDEN--VDVEFKDYGIKLEFKPNIKRDQSIDLRANVSSSQIADFIKLGGND 298

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R  +T + +  G   VLAGL+ +   Q    +P L  +PI+G+LF +  F   +
Sbjct: 299 TPQLNTRSVNTELNVNDGDIFVLAGLIDNSQTQAVSKVPFLGYLPIIGSLFTSENFKSNK 358

Query: 408 TEIFIA 413
           TE+ I 
Sbjct: 359 TELMIF 364


>gi|192361327|ref|YP_001983786.1| general secretion pathway protein D [Cellvibrio japonicus Ueda107]
 gi|190687492|gb|ACE85170.1| General secretion pathway protein D [Cellvibrio japonicus Ueda107]
          Length = 681

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 97/523 (18%), Positives = 183/523 (34%), Gaps = 88/523 (16%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L+ T    +   L    P    L   + +NA +I  +   + +  ++ + L+K+ I Q  
Sbjct: 145 LKNTSAAKILAALRPLVPQYGHLTTYEPSNALIITDTRANVARMNELVVQLDKIGITQTD 204

Query: 64  VDVQDVLVSDPTK---ADVVVHSPRTMYLFGKNVGQAN---VILIGHD-GKQMLNLDILI 116
           V       +         +    P          G      VI+        +++ D + 
Sbjct: 205 VIPLRYANATEVVNMLTQLEKPDPNR--------GMTTSPPVIVADKRINAVVISGDDMS 256

Query: 117 ERDIAHLEMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQRAVELS----- 164
            + +  L   L R    ++N+RV      +      VL GM+++   S++A   +     
Sbjct: 257 RQRLKFLIDDLDRPQTKNANVRVVYLRYAKAEDVAKVLTGMMQSFTQSRQAEGAAPNTQQ 316

Query: 165 -------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
                   T       +     +   +++ L+I    QV ++  IAEV  +  K++G + 
Sbjct: 317 PGVQADPATNSVLLTADVDTMDTMLSIVDSLDIR-RAQVLVEAIIAEVSDEDGKELGIEW 375

Query: 218 SITGSSSGPS-------------------------------KSFAADFGGKFVSEGGDFS 246
                  G                                  + A    G     G  F 
Sbjct: 376 MYRDDKYGFGASANGSRGSIGGIGSAVLAASDKNASQDDKDTALANLASGLSGLSGQMFG 435

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301
              + +R  F  VL  ++ ++    L+ P+L       A  + G Q  ++T S S     
Sbjct: 436 FGRLGERTDFLAVLKLMQSSSKTNILSTPSLLTTDNNQAVISVGRQVPFRTGSYSAVGTG 495

Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                 +  T++   D G+ L  TP +     I L I+ EVS      +   +     R+
Sbjct: 496 GNSTIGSPFTTINREDVGLKLEVTPHINEGDSIVLDIKQEVSSLSDVSSEDGI-ITNKRE 554

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T +    G TIVL GL+ D++Q  +  +P+L  IP+LG LFR+   ++ +T + +   
Sbjct: 555 IQTQILSSDGETIVLGGLITDEVQTGERRVPVLGSIPVLGQLFRSQTSSKSKTNLLVFIR 614

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
             +V+          DD       A+ +   R  ++   +   
Sbjct: 615 ATVVR----------DDKVLTGSTAEKYRLIREEQLNHVRNRG 647


>gi|194446460|ref|YP_002042738.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194405123|gb|ACF65345.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 426

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 10  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G   + +      Q    +    +
Sbjct: 66  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L +     + + +I ++      +     + +      +    T       N+ A 
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAAL 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +           
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417

Query: 414 ATPFLV 419
            TP LV
Sbjct: 418 ITPRLV 423


>gi|205357592|ref|ZP_03223780.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205330642|gb|EDZ17406.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
          Length = 426

 Score =  201 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 10  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G   + +      Q    +    +
Sbjct: 66  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L       + + +I ++      +     + +      +    T       N+ A 
Sbjct: 119 DAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   S           
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDL 237

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPY 297

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417

Query: 414 ATPFLV 419
            TP LV
Sbjct: 418 ITPRLV 423


>gi|194451757|ref|YP_002047512.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205359079|ref|ZP_03224213.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194410061|gb|ACF70280.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205338987|gb|EDZ25751.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 426

 Score =  200 bits (509), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 10  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G   + +      Q    +    +
Sbjct: 66  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L +     + + +I ++      +     + +      +    T       N+ A 
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +           
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417

Query: 414 ATPFLV 419
            TP LV
Sbjct: 418 ITPRLV 423


>gi|205359546|ref|ZP_03224342.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205344340|gb|EDZ31104.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
          Length = 429

 Score =  200 bits (509), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 164/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 13  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 68

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G   + +      Q    +    +
Sbjct: 69  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 121

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L +     + + +I ++      +     + +      +    T       N+ A 
Sbjct: 122 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 181

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +           
Sbjct: 182 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 240

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 241 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 300

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 301 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 360

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 361 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 420

Query: 414 ATPFLV 419
            TP LV
Sbjct: 421 ITPRLV 426


>gi|254784514|ref|YP_003071942.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
 gi|237684660|gb|ACR11924.1| general secretion pathway protein D [Teredinibacter turnerae T7901]
          Length = 661

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 82/466 (17%), Positives = 166/466 (35%), Gaps = 52/466 (11%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L+      +   L    P  + L     +NA V++ +   I + K++   ++   +    
Sbjct: 133 LKNIAAAKVLPVLRPLVPQHSHLAAYDPSNAIVVSDTAANIERIKEVIEKIDTAAMPVTE 192

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V       S+   A +           G +  Q  ++    +   +L+ + L  + +  L
Sbjct: 193 VIELKYADSESLVATLAKLDGANK--QGNSANQITMVADKRNNAILLSGEDLQRQRVKQL 250

Query: 124 EMTL-RRFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------RAVELSETFLSQ 170
              L R  +   N+RV             VL  +V+ +           A + +     +
Sbjct: 251 IRRLDRPQLQTGNVRVVYLEYATAKDVATVLSKVVQNMAKMTPGGDKGAARQGATVEADE 310

Query: 171 SGRNQYANSSSKK------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  +    +   +      V++ L+I    QV ++  I E+     + +G       ++ 
Sbjct: 311 ATNSLLITAEGDQLDAIMAVVDRLDIR-RAQVLVEAIIVEMTLGDKESLGIDWMFKNATQ 369

Query: 225 GPSK----------------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           G                         + A        S+G    V G      F  +++ 
Sbjct: 370 GLIGASTAGGTGAAGVAAALFGGAEDAAAQLLTALGGSDGQTLGVAGESGGEDFLVLVNM 429

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGV 314
           L+  +    L+ PTL  +    A  + G    + T S         +    ++   D G+
Sbjct: 430 LQSNSNANILSTPTLLTMDNNEAMISVGQNVPFVTGSFTNAGGNGGTNPFQTIQRQDVGI 489

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP V    ++ L IQ E+S       +        RK +T V       IVL GL+
Sbjct: 490 TLTVTPHVNEGDKVILDIQQEISSVSEEAGSASDVITNQRKVETQVMAKDRSVIVLGGLI 549

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +D++Q+ +  +P+L  IP++G LFR++     ++ + I   P +++
Sbjct: 550 RDELQKSENRVPVLGSIPVMGRLFRSNSETLRKSNLMIFIRPTIIR 595


>gi|329895109|ref|ZP_08270837.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
 gi|328922510|gb|EGG29849.1| General secretion pathway protein D [gamma proteobacterium
           IMCC3088]
          Length = 672

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 81/480 (16%), Positives = 160/480 (33%), Gaps = 67/480 (13%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+      +   L    P  A +     +NA VI+     I +   +   +++  I + 
Sbjct: 142 RLENISAAKLIPVLRPLVPQQAHMAAYTPSNAIVISDLASNISRINDLISQMDQSAIQET 201

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG--QANVILIG-HDGKQMLNLDILIERD 119
            +   +  V++     +   +           G  +  +++        ++  D L    
Sbjct: 202 DILPLEYAVAEDVVKMLEQLNKSE----AAQAGGEETVLLVADTRTNSVLVTGDELQRAR 257

Query: 120 IAHLEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ------------RA 160
           +  L   L   +  + N++V      +      VL  +++ I                  
Sbjct: 258 MRALVEHLDTPLQRAGNVKVVYLKYAKAADVAQVLTKVMQNIGRLDSSKSKTSGGHDATI 317

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--- 217
                T       +    ++ + V+  L+I    QV ++  I E+     + +G Q    
Sbjct: 318 EADEGTNSLIITADTDEMAALESVIYQLDIR-RAQVLVEAIIVEMEVIDGQSLGLQWLFA 376

Query: 218 ---------------------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                                      +   ++                S G       +
Sbjct: 377 NDSGVYGSSVSSDVSTAGAISSAVLGGNADAANPVGDFDLGQLAAALAGSPGLTLGWGAI 436

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
            +  S   +L+AL++ +    L+ PTL  +  Q A  T G    + T + +         
Sbjct: 437 DNDLSMTVILNALKKQSNANILSTPTLLTLDNQEAYITVGQNVPFVTGAYTNTGSGGSGV 496

Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                ++   + G+ L  TP +     + L I+ EVS      +         RK  T V
Sbjct: 497 QNPFQTIERENVGITLTVTPHINDGDSVVLDIEQEVSSLTGLSSIASDLITNERKIQTKV 556

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G T+VL GL+KD++Q   + +P+L  IP+LG LFRN      +T + I   P +++
Sbjct: 557 LAGDGKTVVLGGLIKDNVQDGSQRVPVLGSIPLLGRLFRNDAVEVTKTNLLIFIRPTIIR 616


>gi|194470789|ref|ZP_03076773.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205358599|ref|ZP_02657680.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194457153|gb|EDX45992.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333155|gb|EDZ19919.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 426

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 84/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 10  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G     +      Q    +    +
Sbjct: 66  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-FHV----HSQAWQKEHSARQ 118

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L +     + + +I ++      +     + +      +    T       N+ A 
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +           
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 357

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417

Query: 414 ATPFLV 419
            TP LV
Sbjct: 418 ITPRLV 423


>gi|148556416|ref|YP_001263998.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
 gi|148501606|gb|ABQ69860.1| type II and III secretion system protein [Sphingomonas wittichii
           RW1]
          Length = 431

 Score =  199 bits (506), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 102/438 (23%), Positives = 158/438 (36%), Gaps = 59/438 (13%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
              ++S  L ++   +         +                +S+ L    +L  P  + 
Sbjct: 1   MTRLLSTALVAAVALIGPAAATAAED---------------SLSLQLRVKRVLDYPKPIA 45

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + V       V   S R++ +     G A + +   DG  +    I +           
Sbjct: 46  RIQVDREGVIAVRAPSRRSLGVTAIGTGLATLSVFAADGSLIGRTAISVG---------- 95

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                 +   V    D   L G V  +                       +S+ +   N 
Sbjct: 96  --LPGGATGDVRADEDDGSLSGTVDGLAARAALQR---------------SSADRGAANS 138

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---- 243
           L++ GE  V + V  A V    L+ +GF  S        +    A  G    +  G    
Sbjct: 139 LSVNGEQVVAVDVQFAAVSSSTLRALGFNFSKLSGDLQGAIVSPATLGNFSSTSTGLTLD 198

Query: 244 -------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HL 294
                   F++           VL AL      + LA+PTL   SG+ ASF +GG+    
Sbjct: 199 TTAPLQNAFNLFLSAPNRGITAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEVPIP 258

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPS 350
               + +     +   ++GV L  TP VLS  RI L+I  EVSE             +P 
Sbjct: 259 VPQNNGNGNGIGIEYKEFGVRLKVTPFVLSKDRIVLKIAPEVSELDYTNGVRLQGYVVPG 318

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R R  +TTV+L SG + V+AGL   +    KE  P L  +P+LGALF+  +  RE  E+
Sbjct: 319 LRRRSTETTVQLGSGQSFVIAGLTYSNSVVSKEKTPFLGDLPVLGALFKRQQNQRESQEL 378

Query: 411 FIAATPFLVKPVAMRDLS 428
            I ATP LV P+    + 
Sbjct: 379 IIVATPRLVGPMDPSRIP 396


>gi|197265045|ref|ZP_03165119.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197243300|gb|EDY25920.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 426

 Score =  199 bits (505), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 83/426 (19%), Positives = 163/426 (38%), Gaps = 21/426 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
             +RT    ++I L +  P+       K A   ++      +   + ++    +  ++  
Sbjct: 10  VRERTMKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVS 65

Query: 63  PVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           P     + +         A   V +   + L  +  G   + +      Q    +    +
Sbjct: 66  PDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQ 118

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           D   L +     + + +I ++      +     + +      +    T       N+ A 
Sbjct: 119 DAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAAL 178

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +           
Sbjct: 179 AELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDL 237

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 238 SVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 297

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  G I L+  I   V   V+    G++ +   
Sbjct: 298 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGLIRLKLHISQNVPGQVLQQADGEVLAIDK 357

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ + 
Sbjct: 358 QEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVF 417

Query: 414 ATPFLV 419
            TP LV
Sbjct: 418 ITPRLV 423


>gi|119943949|ref|YP_941629.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
 gi|119862553|gb|ABM02030.1| type IV pilus secretin PilQ [Psychromonas ingrahamii 37]
          Length = 689

 Score =  198 bits (503), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 64/296 (21%), Positives = 120/296 (40%), Gaps = 6/296 (2%)

Query: 129 RFIADSNIRVEMV---SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
             +    I+V        + +L     ++   + AV +     +   ++  A   + K M
Sbjct: 389 APLYSEFIQVNYAKVADISAMLSSDKTSLLSERGAVSVDNRTNTLLVKDTAAVIDAVKKM 448

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
             +      QV ++  +  V   + +++G +  +T +SS    S   +      +    F
Sbjct: 449 IQILDIPVRQVVIEARMVTVDDSVSEELGVKWGMTSTSSSTVDSLNVNLPATDAAGTIAF 508

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            +    +    +  L ALE       +A P +T  + Q+A    G +  Y   +SS GAT
Sbjct: 509 KLAKFSNGDILDLELSALESENKAEIIASPRITTANQQTAYIEQGTEIPYVESASS-GAT 567

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELP 363
           SV      + L  TP +    ++ L ++         +    G+  +   +K  T V + 
Sbjct: 568 SVAFKKAVLSLTVTPQITPDNKVILDLEITQDTVGETVSAGTGEAVAIDTQKIGTQVLVG 627

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ +         +PLL  IP LGALFR++     ++E+ I  TP +V
Sbjct: 628 NGETLVLGGIYQQRNSIAVSKVPLLGDIPYLGALFRSTNEENTKSELLIFVTPRIV 683


>gi|255020086|ref|ZP_05292157.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970448|gb|EET27939.1| type II and III secretion system protein [Acidithiobacillus caldus
           ATCC 51756]
          Length = 502

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 77/439 (17%), Positives = 150/439 (34%), Gaps = 59/439 (13%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A+      +  + + I +   +V ++     V+ V + D       V     + L G   
Sbjct: 13  AIAMAIPAQAAEDRTIDLYAGQVRVIPTK-PVKRVAIGDGKVLSTTVVDGNELLLLGDAE 71

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVSDTVVLHGM 150
           G+ ++ +   DG +     ++  +++      +R  +        IRV      V    +
Sbjct: 72  GETSLRVWFKDGSEAAYRVLVAPKNVGRAAEEMRELMGAEKSPAKIRVVGDHVVVDGKNL 131

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
             T     RA++    +         +    +K            V L V I E+R+ +L
Sbjct: 132 APTTLARVRALQ--ALYPKTIVLATPSPFDMEK-----------MVWLDVNILEIRKSVL 178

Query: 211 KQIGFQHSITGSSSGPSKS--------------------------------FAADFGGKF 238
           +  G   S        +                                        G  
Sbjct: 179 ENFGVDWSKQIPGPFAAFGKDFVGPRNVATVPLGQDLTQPPVAGTGVRVTPPLGSLNGAI 238

Query: 239 VSEGGDFSVKGVLDRFSFET---VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   + G  +          ++          +A P L+A SG    F +GGQ   
Sbjct: 239 DLANLARPIAGTTNFGIITGVLSTINFALSNGDAYLIANPQLSARSGGRTDFLAGGQVPI 298

Query: 296 KTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMP 349
               ++      +VT  DYG+ L F P V     + +R+  +VS+         N   +P
Sbjct: 299 LQALAAGNAAFQNVTYKDYGIKLEFEPRVDDDNNVSMRVLADVSDIDPATSVSLNGFTVP 358

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R+++  + +  G T+V++GL+     +    +P L  IPILG LF+++ F    T+
Sbjct: 359 GFITRRSNAEINVGDGQTMVISGLVNPKTAKNVSKLPWLGDIPILGNLFKSTNFQSGNTD 418

Query: 410 IFIAATPFLVKPVAMRDLS 428
           + I  TP +V   ++ ++ 
Sbjct: 419 LVILVTPRVVSAASLENIR 437


>gi|331005872|ref|ZP_08329224.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
 gi|330420316|gb|EGG94630.1| Helix-turn-helix, AraC type [gamma proteobacterium IMCC1989]
          Length = 659

 Score =  198 bits (502), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 83/448 (18%), Positives = 165/448 (36%), Gaps = 46/448 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L    P  A L   + +NA +++ +   I +   I   +++  + +  V   +   +  
Sbjct: 161 VLRPLAPQHAHLAAYEPSNAIIVSDTVANIARLTDIIERIDRAGVAETDVMPLEYAQA-A 219

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             A ++    +      KN  QA ++        ++  D +    +  L   L      S
Sbjct: 220 ELATILQQLSKNDQDSPKNT-QAVIVADQRSNSILVTGDQVRRNKVRELVARLDVSQPQS 278

Query: 135 -NIRV------EMVSDTVVLHGMVRTIQD------------SQRAVELSETFLSQSGRNQ 175
            N+RV      +      VL  +V +I              ++ A   ++   +      
Sbjct: 279 GNVRVIYLEYADAEEVATVLAKVVSSISKLEPDSAKGAKPSAENASVEADPATNSLLITA 338

Query: 176 YANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            A++      V+  L+I    QV ++  I E+  D+ +++G + +    ++G   S  + 
Sbjct: 339 DADTMESLLSVIKRLDIR-RAQVLVEAIIVEITNDLSRELGVEWAAYKQNNGFIGSRNSA 397

Query: 234 FGGKFVSE--------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
             G   +               G      G  +   F  +++  + +     L+ P+L  
Sbjct: 398 TLGTLATAIESGDGIAGAPNFTGQGLGFFGNSNGVDFAGLINFFQGSAEANVLSTPSLLT 457

Query: 280 ISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
                A  + G    + T         S+    ++   D G+ L  TP +     + L I
Sbjct: 458 TDNNEAEISIGQNVPFVTGSFTTSSGDSTDPFQTIEREDVGISLKVTPQINEGDTVNLEI 517

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           Q EVS       A D+     RK  T V    G TI+L GL+ ++++Q ++ +P L  IP
Sbjct: 518 QQEVSSISNSSQASDV-ITNERKISTKVIAQDGETIILGGLISNEVRQDEQKVPFLGDIP 576

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           +LG LFRN      +  + +     +++
Sbjct: 577 LLGGLFRNDSTTSSKQNLMVFLRATILR 604


>gi|207858728|ref|YP_002245379.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|206710531|emb|CAR34889.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 412

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   S                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|330722019|gb|EGG99947.1| General secretion pathway protein D [gamma proteobacterium
           IMCC2047]
          Length = 338

 Score =  197 bits (500), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/290 (21%), Positives = 113/290 (38%), Gaps = 12/290 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKF 238
           K V+  L+I    QV ++  I EV   +L  +G Q   +  S+G   +F A   +     
Sbjct: 14  KGVVQKLDIR-RKQVLVEAVIVEVNDSVLDDLGVQWQTSTPSNGEFSAFNAIPANISTPA 72

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +   G     G     S   ++ ALE  T    L+ PT+  +  + A    G    + T 
Sbjct: 73  LPTLGSGLTLGYFKDNSLRALIRALESDTKANVLSTPTIVTLDNEEAEILVGSNVPFITG 132

Query: 299 SSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           S +           ++   D G+ L   P +     + L I+  V               
Sbjct: 133 SETNESSPTSNPFQTIQRQDIGITLKVKPRINENDSMTLAIEQTVESIATSAVNTADIVT 192

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V L     +VL GL+ D+   ++  +P+L  IP+LG LFR++    E+  + 
Sbjct: 193 NKRNIKTNVLLEDDQVLVLGGLISDESSNVESKVPVLGHIPVLGRLFRSTSTKVEKKNLM 252

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +   P ++  +   +     D Y+   + +  +    ++I+ PK+   + 
Sbjct: 253 VFIHPMILSDLERSN-KLTSDRYNSMRNKQQQYNGDRDRIFIPKQPPLLP 301


>gi|16766776|ref|NP_462391.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16422046|gb|AAL22350.1| putative transport protein [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|261248643|emb|CBG26481.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267995705|gb|ACY90590.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301160031|emb|CBW19550.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914512|dbj|BAJ38486.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|323131847|gb|ADX19277.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332990340|gb|AEF09323.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 412

 Score =  196 bits (498), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                  + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   S                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|320087902|emb|CBY97664.1| Protein transport protein hofQ Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 412

 Score =  196 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|260768627|ref|ZP_05877561.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
 gi|260616657|gb|EEX41842.1| type II and III secretion system protein [Vibrio furnissii CIP
           102972]
          Length = 387

 Score =  196 bits (497), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 92/411 (22%), Positives = 162/411 (39%), Gaps = 67/411 (16%)

Query: 44  IGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
           +   + I++  N    L V    +  V V+DP  A + V +  T+ +   N G  ++++ 
Sbjct: 20  VHAAEPITLSENAQTSLSVGEQQITRVAVADPNVATIDVLNKNTLLINSHNGGSTSLLVW 79

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
             +        + +   +              N++V+           ++ ++ S+ A++
Sbjct: 80  LKNSPSPKAYQLHVVPSLVSTT----------NVQVQT---------DIKVVEVSKSALK 120

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +  F  +   N      +   +N                                    
Sbjct: 121 EAGFFFGKQSGNTTFGIGNNAALN------------------------------------ 144

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             G + +     G  F+     F+V          + + AL       TLAEP+L  +SG
Sbjct: 145 --GGNFAGELLSGNSFLPLSNAFNVVIGDMSRGILSTISALNANGFAYTLAEPSLVTMSG 202

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---- 338
            +A+F +GG+  Y    SS G  ++   ++GV L+ +PTV+   RI L++  EVSE    
Sbjct: 203 HTATFLAGGEFPYPKA-SSDGDITIEFKEFGVRLNLSPTVMKDNRIMLKVAPEVSELNYN 261

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +      +P   VR+ DTTV+L  G T V++GL+        +  P L  IPILGA F
Sbjct: 262 NAVSTGGVLVPGMSVRRTDTTVQLGDGETFVISGLISSSTMNNSDRFPGLGDIPILGAFF 321

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDL--SRPDDHYS--VEDDAKAFFF 445
            ++RF + + E+ +  TP LVKP+A        P + Y     D  +  F 
Sbjct: 322 SSTRFEKNDKELMMVVTPHLVKPIAKGATLPPLPGEIYRNYRPDFFELVFL 372


>gi|62181990|ref|YP_218407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62129623|gb|AAX67326.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Salmonella enterica subsp. enterica serovar
           Choleraesuis str. SC-B67]
 gi|322716478|gb|EFZ08049.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 412

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 163/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +   ++D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSAQQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +    A           
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVATLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|238913611|ref|ZP_04657448.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 412

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVSVVQVLQALA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|85705572|ref|ZP_01036670.1| type II and III secretion system protein [Roseovarius sp. 217]
 gi|85669997|gb|EAQ24860.1| type II and III secretion system protein [Roseovarius sp. 217]
          Length = 441

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 87/448 (19%), Positives = 172/448 (38%), Gaps = 38/448 (8%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
           + ++        +++++   K I+L V  +V  V VSD T AD  + S   +++FGK VG
Sbjct: 22  LPSVLSSPASAQERLTVEQGKSILLPVGDNVDTVFVSDTTVADASISSNNRVFVFGKEVG 81

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           + ++I         +   +++   ++ +   ++       I VE    ++++ G+V + +
Sbjct: 82  ETSLIATSTYADSDMTFTVVVTHKLSEIRSVIQSRFPGEQIAVESSRGSLMITGIVSSDR 141

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +  V   E+   ++            +++ L +A  + + L+V + EV R  ++  G 
Sbjct: 142 VRETLVTTLESAAPETT-----------IIDRLRVASSNIIRLEVKLLEVSRTQVENFGI 190

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             + T +++G     +        + G     K      S    L  L          E 
Sbjct: 191 DWNATVTANGFFLGTS--------NRGVLSVGKSDTAESSLNAALDVLISNGIATIAQET 242

Query: 276 TLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            L+ ++G+ A F+ GG+            SS G   +     G  L FTP++    ++ L
Sbjct: 243 VLSTVNGEEALFSVGGEIPIPTFIPVDSGSSDGNFQLDFKFIGTSLSFTPSIAPGNKLRL 302

Query: 331 RIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            I + +S   +    VN    P+   R   T VEL      V+AG+ ++D          
Sbjct: 303 LIDSTISSQGQTSSTVNGNVFPNLNTRSFRTNVELSDRQPFVIAGVTRNDTSNDLRQDRG 362

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS--RPDDHYSVEDDAKAFFF 445
                I+ +L    R      E+ +  TP L+  +  + +    P    +   +      
Sbjct: 363 TGLSRIVDSLLGQDRVTANSQELVVIVTP-LLTELEPQSIQERLP----APLSNLGFILS 417

Query: 446 NRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           NR ++       +     N  GA GF Y
Sbjct: 418 NRDSR----TAITHEPRYNAFGAAGFRY 441


>gi|322831067|ref|YP_004211094.1| general secretion pathway protein D [Rahnella sp. Y9602]
 gi|321166268|gb|ADW71967.1| general secretion pathway protein D [Rahnella sp. Y9602]
          Length = 659

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 62/272 (22%), Positives = 104/272 (38%), Gaps = 24/272 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              Q    S ++V+  L+I    QV ++  I EV+      +G Q S             
Sbjct: 321 TAQQDVMQSLEQVITKLDIR-RAQVLVEAIIVEVQDGNGLNLGIQWSNNQVGGTQFTGTG 379

Query: 232 ADFG------------GKFVSEGGDFSVKGVLDR-------FSFETVLHALERATAIRTL 272
           A               G   S+    S     +          +  +L AL  +     L
Sbjct: 380 APISTVAAGVRQYKKEGIISSDNPLSSTLQTFNGMTAGFFSGDWNVLLTALSTSNKNDIL 439

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRI 328
           A P++  +  + ASF  G +    + S +T      +SV     G  L  TP +     +
Sbjct: 440 ATPSIVTLDNKEASFNVGQEVPSLSGSQTTSGDNIYSSVVYKTVGTKLKVTPQINEGDSV 499

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + I+ EVS      N+   P++  R     V + +G T+VL GLL D  ++ K  +PLL
Sbjct: 500 LMEIEQEVSSVDTSTNSSLGPTFNTRTISNAVLVRTGETVVLGGLLDDSTKETKSKVPLL 559

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP +G LFR +     +  + +   P +++
Sbjct: 560 GDIPWIGNLFRYTSTESAKRNLMVFIRPTIIR 591


>gi|56415404|ref|YP_152479.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197364334|ref|YP_002143971.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129661|gb|AAV79167.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095811|emb|CAR61383.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 412

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 162/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++ V    +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYVDTGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|116328309|ref|YP_798029.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116331035|ref|YP_800753.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116121053|gb|ABJ79096.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116124724|gb|ABJ75995.1| Type II secretory pathway component, protein D [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 598

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/438 (18%), Positives = 160/438 (36%), Gaps = 39/438 (8%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADV 79
           ++A+ P ++     +    + E+G  + I+  I +      ++   ++ +   +     +
Sbjct: 132 ALARSPVVRVGKELIP---ETEVGDYRTITQIIPIENTKPEELEPILKRLTSPNTDV--I 186

Query: 80  VVHSPRTMYLFGKNVGQANVILI----------GHDGKQMLNLDILIERDIAHLEMTLRR 129
           V  +  T+ L G       ++++             G      D+ I          +  
Sbjct: 187 VYRNTNTIVLSGSGADINKLLVLINELDLKLEEASPGAIASAGDVHIYTLEHSEAEKIAA 246

Query: 130 FI---ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
            +    +  ++ E +S    + G +    +  +AV   E+            +  +K++ 
Sbjct: 247 TLVKLDNPVVQSEELSPEKKVPGQIPMKVEKIKAVGHKESNSVIVTATNAEWAEIRKIIK 306

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           +L+ +   QV L+V I E+    L   G      G + G   S  +       S G    
Sbjct: 307 VLD-SARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQINP 365

Query: 247 VKGVLDRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               L  FS   +          L A +       L+ P +  +  Q A  + G     +
Sbjct: 366 NVNTLSGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVR 425

Query: 297 TVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           T S + G          +      G+ L FTP V    RI L +  E+        AG  
Sbjct: 426 TQSRNAGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNRITLELFQEIKNIAEIALAGGN 485

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P++  R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +    ++T
Sbjct: 486 PTFNRREIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKT 545

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +  TP ++      D
Sbjct: 546 NLMVFITPHILDSRENAD 563


>gi|85711968|ref|ZP_01043022.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
 gi|85694154|gb|EAQ32098.1| possible Flp pilus assembly protein CpaC [Idiomarina baltica OS145]
          Length = 393

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 152/386 (39%), Gaps = 36/386 (9%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
              +        + +++ + +  +L +      V+++D   A   + S  T+ + G   G
Sbjct: 11  AAWVQTSNAVTTENLTLTVGQSELLTI-TPSTQVMIADEALAQAKLISQDTLLVRGLLPG 69

Query: 96  QANVILIGHDGK--QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
             ++ LIG + K   +  +  + +  +  L+   R +    N  V      + L G +  
Sbjct: 70  TTDMWLIGPNDKRVVITIVHAVPKTIVTRLKTWARDY---PNFNVHEEGQHIELSGSLP- 125

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             +     +L E + +   R          +             LKVTI E+++  ++Q+
Sbjct: 126 ALERTALKKLIEPYPNIIDRTVSTRVDHPML------------RLKVTILEIKQQFVQQL 173

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G Q                                GV       + +  LE+  A + LA
Sbjct: 174 GIQWDSQIDGPNWQWGRQ----------------GGVQWSPLLMSNIQLLEQQGAAKLLA 217

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P LT  SGQ ASF +GG+     V    G   V+  +YGV L   PTV +  +I  ++ 
Sbjct: 218 TPVLTTQSGQPASFLAGGEIPIPQVV-GQGMQDVSFREYGVRLTIEPTVSAESKITAKLS 276

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            EVS     V    +P    R+ +  +    G T+VL+GLL  D  + + G+P L ++PI
Sbjct: 277 AEVSNIDPAVEVNGVPGILTRRTEAVLSSRHGETVVLSGLLSTDSSESEAGLPGLKQLPI 336

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
            G +F++     + TE+ I  T  +V
Sbjct: 337 AGEVFKHRGQRNQHTELLIFVTSEIV 362


>gi|322629821|gb|EFY26594.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322659197|gb|EFY55449.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|323227365|gb|EGA11531.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323245960|gb|EGA29947.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323250737|gb|EGA34615.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323261394|gb|EGA44980.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
          Length = 412

 Score =  194 bits (493), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L    P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|209518484|ref|ZP_03267306.1| type II and III secretion system protein [Burkholderia sp. H160]
 gi|209501117|gb|EEA01151.1| type II and III secretion system protein [Burkholderia sp. H160]
          Length = 684

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 78/483 (16%), Positives = 167/483 (34%), Gaps = 72/483 (14%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
           +  S+ + P   +   A + +    + +   +++  ++ +   +      + V++ T   
Sbjct: 190 AASSIMRTPVTLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNATLQD 246

Query: 77  ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
                      D    +  T++++     +          +  +    L   +   ++  
Sbjct: 247 TVNMILMQNQLDKKQLNANTLFIYPATPAK-----QLEYQELKVRTFQLSNVEAKQIQSL 301

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    + V+  ++TV + G   TI+ +++   ++   L                  
Sbjct: 302 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPDPE-------------- 345

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV  D L  +G     + + S PS                + S
Sbjct: 346 ---------VILEVKVLEVSHDRLTDLGIAWPNSFTVSTPSTVDTWGELHHLPINALNVS 396

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
                  F            T    LA P++ A + + A    G +    + SS+     
Sbjct: 397 GLSATANFKL--------TDTDANLLASPSIRARNKEKARILIGDKVPVISSSSTPSTSG 448

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352
                ++   D G+ L   P V     +G+++  EVS     +++ +             
Sbjct: 449 PSYAQTIQYLDVGIKLEVEPQVYRDADVGMKLNLEVSNITNTISSSNSTTGLTSLAYEIG 508

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A T++ +  G + +L GL++D+ +   + +P L ++P+LG LF N   + ++TEI +
Sbjct: 509 TRSASTSLRVHDGESQILGGLIQDEDRLTADKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 568

Query: 413 AATPFLVKP-----VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
             TP +V+P        ++L    D     D  +            P  A    G    G
Sbjct: 569 EITPHIVRPQTSADADTQELWSGTDVNVHADQLRLDPVGAEATEQMPVPAVRTPGNVGGG 628

Query: 468 AIG 470
             G
Sbjct: 629 TTG 631


>gi|17547022|ref|NP_520424.1| GSPD-like protein [Ralstonia solanacearum GMI1000]
 gi|17429323|emb|CAD16010.1| probable type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 789

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 155/434 (35%), Gaps = 67/434 (15%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A + +    + +   +S+  ++ + + +      + VS+ +  D
Sbjct: 185 AAASIMRKPVSLQFRDANVRMVFEALSRTTGLSVIFDRDVRVDLK---TTIFVSNASLED 241

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V            V +  T++++     +             +    L   D  H++  
Sbjct: 242 TVDMILLQNQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    I  +  ++TV +     TI+ ++R   ++   L +                
Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV RD L  +G     + S   PS +                S
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDWPNSFSLGTPSSASTWGALHHLTVNQLTAS 391

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
              V                T    LA P +   + + A    G +    + SS      
Sbjct: 392 GLSVTANLKL--------TDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
                S+   D G+ L   P V     +G+++  EVS     +++ +             
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TT+ L  G T +L GL++D+ +     +P L ++P+LG LF N   + ++TEI +
Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563

Query: 413 AATPFLVKPVAMRD 426
             TP +V+P    D
Sbjct: 564 QITPHIVRPQLAAD 577


>gi|327399337|ref|YP_004340206.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
 gi|327181966|gb|AEA34147.1| type IV pilus secretin PilQ [Hippea maritima DSM 10411]
          Length = 704

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 60/257 (23%), Positives = 110/257 (42%), Gaps = 32/257 (12%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGK---------------- 237
           V +   I E+ +   +Q+G Q        +   SK+F    G                  
Sbjct: 447 VEIDARIVEISKSFERQLGIQWGGNFFNQNINNSKTFIGVGGSSSPVDVSSGLPPSESFS 506

Query: 238 --------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +     ++  VL  ++ +  L   E     + L+ P +  +  +
Sbjct: 507 NDNFVVNLPAGLSDAPTSTVRLAIGNVLANYNLDLKLTMGEIEGYSKVLSTPKVITLDNE 566

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A  +SG +  Y+  + ++GATSV+  +  + L  TP +    ++ L+++ +   P    
Sbjct: 567 PAKISSGQEIPYQESAGASGATSVSFKEATLSLEVTPHITRNDQVILKLKIKKDSPDYSH 626

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           + G  P     + D+TV L +G TIV+ GL++   Q+   G+P L +IP+LG LF+  R 
Sbjct: 627 SVGGEPPINTNEVDSTVILSNGQTIVIGGLMQSTTQKTVSGVPGLMRIPLLGWLFKTKRI 686

Query: 404 NREETEIFIAATPFLVK 420
              +TE++I  TP +VK
Sbjct: 687 YNPKTELYIFVTPHIVK 703


>gi|308271298|emb|CBX27906.1| hypothetical protein N47_G32300 [uncultured Desulfobacterium sp.]
          Length = 695

 Score =  194 bits (492), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 102/241 (42%), Gaps = 12/241 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++ TIAE+      Q G +  I  +  G + +          + G  F+   + + 
Sbjct: 443 KQVLIEATIAELTLSDDLQYGLEWYINNTLQGGAYTLGTSGNLGLSASGLAFNF--ISES 500

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGA 304
              + ++ A   A     L+ P L  I  + A+   G      T           S+   
Sbjct: 501 KKVKGLISAFAIAGKTNILSTPRLMVIDNKEATIQVGEDVPTVTSQVTSTESTITSTNLL 560

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            SV   + GV+L   PT+ + G + L +  EVSE          P   +RK +TTV +  
Sbjct: 561 QSVQYRNTGVILRVKPTINTEGLLTLELSQEVSE-TGEKGVAGSPVILMRKINTTVVIAQ 619

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T++L GL+K+     +  +P L  IPI+G LF+ +   + +TE+ I  TP ++  V  
Sbjct: 620 GQTLLLGGLMKEKNTTGESKVPGLGDIPIIGNLFKATSKTKNKTELIILVTPTIISNVDD 679

Query: 425 R 425
            
Sbjct: 680 A 680


>gi|16762799|ref|NP_458416.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29144286|ref|NP_807628.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|213053391|ref|ZP_03346269.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213416770|ref|ZP_03349914.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213426742|ref|ZP_03359492.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213646579|ref|ZP_03376632.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213852697|ref|ZP_03382229.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25324276|pir||AB1000 type II secretion system protein [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16505105|emb|CAD08126.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139923|gb|AAO71488.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 412

 Score =  194 bits (492), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 82/421 (19%), Positives = 160/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L    P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|325294586|ref|YP_004281100.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065034|gb|ADY73041.1| general secretion pathway protein D [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 630

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/448 (18%), Positives = 167/448 (37%), Gaps = 47/448 (10%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
               V ++  ++ +NA V+   +  + + + +   L++     + +++    + +    D
Sbjct: 145 LLSPVGRVSIVRNSNAIVVTDKEKNVHRIETVVRRLDRA---PMKMEIASFEIKNGKVED 201

Query: 79  V-----VVHSPRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V     V+      +   K     G+        D +      +  ++ I  ++  L + 
Sbjct: 202 VEKVLKVLLDKTFAFDIAKTVPLPGRDYYH-FASDKRTNTLFVVGTQKVIREVQSLLPKL 260

Query: 131 IADSNIRVEMVSDTVV-----------------LHGMVRTIQDSQRAVELSETFLSQSGR 173
             D  + VE  +  ++                   G  R        V++     S S  
Sbjct: 261 --DKPLNVEDGNIHIIRLNYAFAEDMAKVLSSLFKGTSRKSMGLTGEVKIVADKSSNSLI 318

Query: 174 NQYANS---SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGP 226
              + S     K+V++ ++I    QV ++V I E+  D L Q+G +            G 
Sbjct: 319 VLSSPSDFKVVKEVIDSVDIKRP-QVFVEVQIVEMSMDKLLQLGVEWKFLSRGNLVPFGG 377

Query: 227 SKSFAADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           S          + S      +       D      +L+A  +   +  +A P +  +  +
Sbjct: 378 SLYGNLPLQAGYPSASPGLLLGIAKWRGDTPDIGLLLNAYAKEGGVNVIATPQILTLDNE 437

Query: 284 SASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            A         Y T     +++    S    D G+ L  TP + + G + L+I  +V + 
Sbjct: 438 EAEINISKVIPYSTGVKYDANNNPVISYDYKDVGITLKITPHITASGEVRLKIYEKVEDV 497

Query: 340 VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           V   NA    P    R+A TTV++  G T+V+ GL+K       E +P+L  IP+LG LF
Sbjct: 498 VGYANADQTAPITSKREAKTTVDVQDGQTLVIGGLIKSKKLTTIEKVPVLGNIPVLGNLF 557

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +    E+T + +  TP +V+     +
Sbjct: 558 KKTGHQIEKTNLLVFITPRVVRSREEEN 585


>gi|213585294|ref|ZP_03367120.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 412

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 81/421 (19%), Positives = 159/421 (37%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L    P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIVLMPAA---QAGKAAKVTLVVDDVPVVQVLQALA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKRTNRLLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   +                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +G TSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGTTSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|205354888|ref|YP_002228689.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205274669|emb|CAR39723.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|326630034|gb|EGE36377.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 412

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 83/421 (19%), Positives = 161/421 (38%), Gaps = 21/421 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++I L +  P+       K A   ++      +   + ++    +  ++  P    
Sbjct: 1   MKRWIAIILIALMPAA---QAGKAAKVTLVVDDVPVVQVLQTLA-EQERQNLVVSPDVSG 56

Query: 68  DVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            + +         A   V +   + L  +  G   + +      Q    +    +D   L
Sbjct: 57  TLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQAWQKEHSARQDAERL 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
            +     + + +I ++      +     + +      +    T       N+ A +  +K
Sbjct: 110 RLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNRMLLRDNRAALAELEK 169

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            ++ +++    QV L   I  +    L+++G + ++  ++   S                
Sbjct: 170 WVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSVGDVTTLSSDLSVAAA 228

Query: 244 DFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S 
Sbjct: 229 TSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSG 288

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T
Sbjct: 289 ESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIET 348

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ +  TP L
Sbjct: 349 QVEVKSGETLALGGIFSRKNKSGSDSVPLLGGIPWLGQLFRHDGKEDERRELVVFITPRL 408

Query: 419 V 419
           V
Sbjct: 409 V 409


>gi|113461255|ref|YP_719324.1| competence protein E [Haemophilus somnus 129PT]
 gi|112823298|gb|ABI25387.1| competence protein E [Haemophilus somnus 129PT]
          Length = 377

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   ++                 ++    +F    
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGSLAANGFQHLTEQLNVNFATAA 181

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + QSAS   G +  Y   
Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356
              +    V   +  + L  TP +     I L +    + P   +  G   M S   ++ 
Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I +  + +PLL  IPIL  LF       ++ E+ I  TP
Sbjct: 302 NTQVFARDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361

Query: 417 FLVKPVAMRDLSRP 430
            +++     ++ +P
Sbjct: 362 RIIRSEQPNEIIKP 375


>gi|207723669|ref|YP_002254067.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206588873|emb|CAQ35835.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 778

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 77/434 (17%), Positives = 152/434 (35%), Gaps = 67/434 (15%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           ++ S+ + P   +   A + +    + +   +++  ++ +   +      + VS+ T  D
Sbjct: 185 ASASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNATLED 241

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V            V +  T++++     +             +    L   D  H+E  
Sbjct: 242 TVDMILMQSQLAKKVMNANTVFIYPATAAK-----QQEYQDLKVRTFQLSNTDAKHIEAL 296

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    I  +  ++TV +     +I+ ++R   ++   L +                
Sbjct: 297 LKSLLKIKEIVTDERANTVSIRATPESIRVAERM--IAAQDLPEPE-------------- 340

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV RD L  +G           P+                   
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFTLGTPSSAATWGDLHHL 383

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               L         +     T    LA P +   + + A    G +    + SS      
Sbjct: 384 TINRLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
                S+   D G+ L   P V     +G+++  EVS     +++ +             
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNAQTGLSSLAYQIG 503

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A T++ L  G T VL GL++D+ +     +P L ++P+LG LF N   + ++TEI +
Sbjct: 504 TRNASTSLRLKDGETQVLGGLIQDEDRDAANKVPGLGQLPVLGRLFSNHNGDHKKTEIVL 563

Query: 413 AATPFLVKPVAMRD 426
             TP +V+P    D
Sbjct: 564 QITPHIVRPQPAAD 577


>gi|68249035|ref|YP_248147.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148825285|ref|YP_001290038.1| competence protein E [Haemophilus influenzae PittEE]
 gi|59939227|gb|AAX12385.1| ComE [Haemophilus influenzae]
 gi|68057234|gb|AAX87487.1| competence protein E [Haemophilus influenzae 86-028NP]
 gi|148715445|gb|ABQ97655.1| competence protein E [Haemophilus influenzae PittEE]
          Length = 445

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|291280100|ref|YP_003496935.1| hypothetical protein DEFDS_1724 [Deferribacter desulfuricans SSM1]
 gi|290754802|dbj|BAI81179.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 796

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 118/290 (40%), Gaps = 28/290 (9%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V + +        S +F+      + A   +K ++  L+     QVT++  I EV    
Sbjct: 514 SVLSPRGKMEINAKSNSFV--ITDIKSAIEQAKDLLEELDKRTP-QVTIEARIVEVFDTN 570

Query: 210 LKQIGFQHSITGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKG 249
              +G Q     + +  S +F                      +      +     S+  
Sbjct: 571 NVNLGIQWGGNYNVNSTSVNFPNTITVNGNTGSTGIGGAGYVVNLPVGAPAGALALSLGN 630

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +   F+ +  L ALE    +RT++ P +T +  Q A   SGG  +      +   T    
Sbjct: 631 LSRTFNLDIALSALESQNKVRTISSPRITTLDNQEAEIKSGGTAIIVP---TGDNTETEE 687

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D G+ L   P + S   I L I+ E S    G    +  +   +KA T V L +G T V
Sbjct: 688 VDVGIKLKIKPHITSNNMIYLDIEVEKSSL--GAVTANTATTEEKKAKTQVLLANGETTV 745

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + G+ +D+  ++ +G+P LSKIPILGALFR       + E+ +  TP +V
Sbjct: 746 IGGIYEDEKSEVNQGVPFLSKIPILGALFRAKNNTVTKRELLVFITPKIV 795


>gi|325529100|gb|EGD06093.1| putative secretion type II protein [Burkholderia sp. TJI49]
          Length = 608

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 155/437 (35%), Gaps = 74/437 (16%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK-- 76
           ++ S+ + P   +   A + +    + +   +++  ++ +   +      + V + +   
Sbjct: 158 ASSSIMRTPVSLQFRDANVRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVQNASLQD 214

Query: 77  ----------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAH 122
                      D    +  T++++                 +   L +        D   
Sbjct: 215 TVDMILLQNQLDKKQMNANTLFIYPATP---------AKELEYQELKVRTFQLSNVDAKQ 265

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           ++  L+  +      ++  ++TV + G    I+ ++    ++   L +            
Sbjct: 266 VQSLLKSLLKVKEAVIDEHANTVTIRGTPDMIKVAEEM--IAAQDLPEPE---------- 313

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
                        V L+V + EV  D + Q+G     + + S PS +             
Sbjct: 314 -------------VMLEVEVLEVSHDRMSQLGINWPNSFTVSTPSSADTWGVLHHLPINA 360

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            + S       F            T    LA P + A + + A    G +    + SS+ 
Sbjct: 361 LNVSGLSATADFKL--------TDTDANLLASPRIRARNKEKARIMIGDKVPVISSSSTP 412

Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MP 349
                     +   D G+ L   P V   G +G+++  EVS     +++G+         
Sbjct: 413 STSGPSFTQMIQYLDVGIKLEVEPQVYRDGDVGIKLNLEVSNITNTISSGNSQGLSSLAY 472

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T++ L  G T ++ GL+ D+ ++    +P L ++P+LG LF +   + ++TE
Sbjct: 473 QIGTRSASTSLRLRDGETQIMGGLISDEDRRNANKVPGLGQLPVLGRLFSDHGGDHKKTE 532

Query: 410 IFIAATPFLVKPVAMRD 426
           I +  TP +V+P    D
Sbjct: 533 IVLQITPHIVRPQVAAD 549


>gi|238754119|ref|ZP_04615477.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
 gi|238707615|gb|EEP99974.1| Protein transporter HofQ [Yersinia ruckeri ATCC 29473]
          Length = 422

 Score =  193 bits (489), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 63/288 (21%), Positives = 109/288 (37%), Gaps = 25/288 (8%)

Query: 157 SQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGE------------------DQV 196
              A E++       G          + K  N L I                      QV
Sbjct: 133 HAEAEEIAANLNVNHGGLLSPQGRVFADKRTNRLLIRDTAESIAALKAWLSELDSPLQQV 192

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DR 253
            L   I  +  + L ++G +  I    SG S     +F      +    +    +     
Sbjct: 193 QLAAHIVTISSESLHELGVRWGIPARDSGGSALRINNFNVGLPIQNSAITAGFNIARISG 252

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              +  L ALE+   +  +A P LT    Q+AS   G    Y   S   G T+V   +  
Sbjct: 253 QLLDLELSALEQENQVEIIASPRLTTSHQQTASIKQGTDIPYSVSSGKNGGTTVEFKEAV 312

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLA 371
           + +  TP +L  G+I L+++   + P + +     +  +   ++  T + +  G TIVL 
Sbjct: 313 LGMEVTPRILGAGKITLKLKISQNMPGMAIKRGENESLAIDKQEIKTQITVNDGETIVLG 372

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ +    +    +P+LS IP+LG LF+ +   +   E+ I  TP L+
Sbjct: 373 GIFQQKNSRGANKVPVLSDIPLLGHLFKQTVNAKSRRELVIFITPRLI 420


>gi|52426025|ref|YP_089162.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
 gi|52308077|gb|AAU38577.1| GspD protein [Mannheimia succiniciproducens MBEL55E]
          Length = 478

 Score =  193 bits (489), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 79/423 (18%), Positives = 155/423 (36%), Gaps = 46/423 (10%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P VA L  +     A + I D        +S+ L K   + +      V        ++
Sbjct: 59  APLVATLQQLALEQNANLVIDDE---LEGTLSLKLEK---VNLERLFHSVA----KLKNL 108

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT---LRRFIADSNI 136
            +H  + +Y F KN    N+I       ++ N +        +L  T   L    A   +
Sbjct: 109 SLHKDKDIYYFTKN----NLIEPSSIAGELKNTENFTALSEPNLVSTTVKLHFAKASEVM 164

Query: 137 RVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +        +L   G V   + S + +             + +  + K ++  L+    +
Sbjct: 165 KSLTSGTGSLLSPVGSVSFDERSNQLL---------IQDERRSLQNIKNIIAQLDKPI-E 214

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKFV 239
           Q+ ++  I  +  + LK++G +  +                   +   ++   +F     
Sbjct: 215 QIAIEARIVTMNDESLKELGVRWGLLEGVNSAHRIAGSLEANGFADIGQNLNVNFPTSAT 274

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G        +     +  L ALE+   ++ +A P L   + +SAS   G +  Y  V+
Sbjct: 275 PAGSVALQVAKIHGRLLDLELTALEQENNVKIIASPRLLTTNKKSASIKQGTEIPYVAVN 334

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKAD 357
                  V   +  + L  TP +     I L +    + P   +    G++ S   ++ +
Sbjct: 335 RKNDTEHVEFREAVLGLEVTPHISKDNSILLDLIVSQNSPGANIVYGNGNLISIDKQEIN 394

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V    G TIVL G+  D I + ++ +P+L  IP++  LF       ++ E+ I  TP 
Sbjct: 395 TQVFAKDGETIVLGGVFNDTITKSEDKVPILGDIPLIKHLFSKESEKHQKRELVIFVTPH 454

Query: 418 LVK 420
           ++K
Sbjct: 455 ILK 457


>gi|170717282|ref|YP_001784397.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
 gi|168825411|gb|ACA30782.1| type IV pilus secretin PilQ [Haemophilus somnus 2336]
          Length = 377

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 100/254 (39%), Gaps = 17/254 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   ++                 ++    +F    
Sbjct: 122 EQIAIEARIVTISDENLKELGVRWGIFEPTNNAHHLSGNLAANGFQHLTEQLNVNFATTA 181

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + QSAS   G +  Y   
Sbjct: 182 TPAGSIALQIAKINDRLLDLELTALERENNVEIIASPRLLTTNKQSASIKQGTEIPYVIT 241

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKA 356
              +    V   +  + L  TP +     I L +    + P   +  G   M S   ++ 
Sbjct: 242 GKKSDEQKVEFREAVLGLEVTPHISKDNTILLDLIVSQNSPGSRITYGQNEMVSIDKQEI 301

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I +  + +PLL  IPIL  LF       ++ E+ I  TP
Sbjct: 302 NTQVFAQDGETIVLGGVFHDTITKGVDKVPLLGDIPILKRLFSRESERHQKRELVIFVTP 361

Query: 417 FLVKPVAMRDLSRP 430
            +++     ++ +P
Sbjct: 362 RIIRSEQPNEIIKP 375


>gi|299066099|emb|CBJ37280.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum CMR15]
          Length = 792

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 78/434 (17%), Positives = 150/434 (34%), Gaps = 67/434 (15%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           S  S+ + P   +   A + +    + +   +++  ++ +   +      + VS+    D
Sbjct: 185 SAASIMRKPVSLQFRDANVRMVFEALSRTTGLNVIFDRDVRTDLK---TTIFVSNAALDD 241

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V            V +  T++++     +             +    L   D  H++  
Sbjct: 242 TVDMILLQSQLAKKVLNANTVFIYPATPAK-----QQEYQDLKVRTFQLSNTDAKHIDTL 296

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    I  +  ++TV +     TI+ ++R   ++   L +                
Sbjct: 297 LKNLLKIKEIVTDERANTVSIRATPETIRVAERM--IAAQDLPEPE-------------- 340

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV RD L  +G           P+                   
Sbjct: 341 ---------VMLEVEVLEVSRDRLTDLGIDW--------PNSFSLGTPSSAATWGALHHL 383

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-- 304
               L         +     T    LA P +   + + A    G +    + SS      
Sbjct: 384 TVNQLTASGLSATANFKLTDTDANLLASPRIRTRNKEKAKILIGDKVPVISSSSVPSTSG 443

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYR 352
                S+   D G+ L   P V     +G+++  EVS     +++ +             
Sbjct: 444 PVYSQSIQYLDVGIKLEVEPQVYRDNDVGIKMSLEVSNITQIISSSNSQTGLSSLAYQIG 503

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TT+ L  G T +L GL++D+ +     IP L ++P+LG LF N   + ++TEI +
Sbjct: 504 TRNASTTLRLKDGETQILGGLIQDEDRDAANKIPGLGQLPVLGRLFSNHNGDHKKTEIVL 563

Query: 413 AATPFLVKPVAMRD 426
             TP +V+P    D
Sbjct: 564 QITPHIVRPQLAAD 577


>gi|319775638|ref|YP_004138126.1| competence protein E [Haemophilus influenzae F3047]
 gi|317450229|emb|CBY86445.1| competence protein E [Haemophilus influenzae F3047]
          Length = 445

 Score =  192 bits (488), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|301169135|emb|CBW28732.1| predicted fimbrial transporter [Haemophilus influenzae 10810]
          Length = 445

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 54/245 (22%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IPI+  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPIIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|170721354|ref|YP_001749042.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169759357|gb|ACA72673.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 745

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 71/337 (21%), Positives = 122/337 (36%), Gaps = 14/337 (4%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
             ++  +   G Q       +  +               +      S      G V++++
Sbjct: 382 TTSLTSLNGTGSQSGQGLSGMGMNTQASIREAPSEDDYEDTGQPEASSAESADGSVKSLE 441

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           +S R      +               +  +  L+ +   QV ++  I EV+      +G 
Sbjct: 442 ESVRITAQKSSNQLLVRTRPAQWKEIESAIKRLD-SPPLQVQIETRILEVKLTGDLDLGV 500

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------RFSFETVLHALERATAI 269
           Q  +   +   S +  A+  G   + G      G           + +  L ALE     
Sbjct: 501 QWYLGRLAGNSSSTTVANESGSQGALGAGGVALGSASMFYSFVSSNLQVALRALETRGLT 560

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLS 324
           + L+ P+L  ++ Q A    G              S T  +SV     GV+L   P +  
Sbjct: 561 QVLSAPSLVVLNNQQAQIQVGDNIPISQTTVNTSDSDTTLSSVEYVQTGVILDVVPRINP 620

Query: 325 PGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            G + + IQ +VS+            P    R   T V + SG T++L GL+K D  Q  
Sbjct: 621 GGLVYMDIQQQVSDADDSAVTTTQPNPRISSRAVSTQVAVQSGQTVLLGGLIKQDNGQSD 680

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P LS IP LG LF ++  +R+ TE+ +  TP +V
Sbjct: 681 TRVPGLSSIPGLGWLFGSTSKSRDRTELIVLITPRVV 717


>gi|227822850|ref|YP_002826822.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
 gi|227341851|gb|ACP26069.1| general secretion pathway protein D, GspD [Sinorhizobium fredii
           NGR234]
          Length = 692

 Score =  192 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 75/366 (20%), Positives = 139/366 (37%), Gaps = 32/366 (8%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
           +++   G+  G   V       + ++  D++ E   A  E        ++ +       +
Sbjct: 334 QSVLATGQAGGGTVV------RQSVVAPDLVAETVAAGGEGAPMEMPPEAAVEAASAPVS 387

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            V   +     ++      +  +              ++++  L++    QV L+  IAE
Sbjct: 388 SVPSVVADIENNALLISTTAREY-----------QRIEQILRQLDV-LPTQVFLEAVIAE 435

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  +   + G +     +S     S  A   G   +    F+   +         L AL 
Sbjct: 436 VSLNDELKFGLRWYFEHNSDAFGLSDLAS--GAVAATFPGFNWTHLAGDAQI--ALQALS 491

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLH 317
             T ++ ++ P L  I+ Q A    G Q    T +        +    SV   D G++L 
Sbjct: 492 SVTNVKVISSPNLMVINNQQAKLQVGDQVPTVTQTSTSTSSADAAIVNSVELKDTGIILA 551

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            TP + S GR+ L IQ EVS  V    +  D P+ + RK  T V +  G ++ L GL+++
Sbjct: 552 VTPRINSSGRVMLDIQQEVSNVVETTTSGIDSPTIQQRKISTRVVVNDGESLALGGLIQE 611

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                ++ +P+L  IP+ G  F++       TE+ I   P +V+ V         D +  
Sbjct: 612 KKSLGQKKMPVLGDIPLFGNAFKSKTDGINRTELIIFIRPRIVRDVQEARQV--TDEFRQ 669

Query: 437 EDDAKA 442
           + D   
Sbjct: 670 QFDFDR 675


>gi|229846521|ref|ZP_04466629.1| competence protein E [Haemophilus influenzae 7P49H1]
 gi|229810614|gb|EEP46332.1| competence protein E [Haemophilus influenzae 7P49H1]
          Length = 445

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|145640400|ref|ZP_01795984.1| competence protein E [Haemophilus influenzae R3021]
 gi|145274986|gb|EDK14848.1| competence protein E [Haemophilus influenzae 22.4-21]
          Length = 445

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|329122312|ref|ZP_08250900.1| competence protein E [Haemophilus aegyptius ATCC 11116]
 gi|327473873|gb|EGF19290.1| competence protein E [Haemophilus aegyptius ATCC 11116]
          Length = 445

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 97/245 (39%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     +  S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEGVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|145630388|ref|ZP_01786169.1| competence protein E [Haemophilus influenzae R3021]
 gi|144984123|gb|EDJ91560.1| competence protein E [Haemophilus influenzae R3021]
          Length = 447

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|260582299|ref|ZP_05850092.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
 gi|260094667|gb|EEW78562.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           NT127]
          Length = 447

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 17/251 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKPVAMRDL 427
            ++K     D+
Sbjct: 426 HILKAGETLDV 436


>gi|145628805|ref|ZP_01784605.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145638655|ref|ZP_01794264.1| competence protein E [Haemophilus influenzae PittII]
 gi|144979275|gb|EDJ88961.1| competence protein E [Haemophilus influenzae 22.1-21]
 gi|145272250|gb|EDK12158.1| competence protein E [Haemophilus influenzae PittII]
 gi|309750149|gb|ADO80133.1| Outer membrane secretin ComE [Haemophilus influenzae R2866]
          Length = 445

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|295096434|emb|CBK85524.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 638

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 59/265 (22%), Positives = 105/265 (39%), Gaps = 18/265 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
           +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +      +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGLDLGVQWTSKHGGVQFGATGLPISQIKNGTM 389

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +        F  ++ AL        L+ P++  +  + ASF  G      + S
Sbjct: 390 KGASFTGLATGFFNGDFGALVTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449

Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
            +        SV     G  L   P +     I L+I+ EVS             P++  
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDNSATEDSSLGPTFNT 509

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+VL GL+++  +Q    +PLL  IP++G LFR +  +  +  + + 
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438
               +++          DD+YS   
Sbjct: 570 IHTTVLRD---------DDNYSAAS 585


>gi|94313628|ref|YP_586837.1| putative secretion type II protein [Cupriavidus metallidurans CH34]
 gi|93357480|gb|ABF11568.1| Putative secretion type II protein; gspD(secretin)-like protein
           [Cupriavidus metallidurans CH34]
          Length = 734

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 71/429 (16%), Positives = 156/429 (36%), Gaps = 67/429 (15%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A I +    + +   +++  ++ +   +      + V++    D
Sbjct: 170 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 226

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V            V +  T++++     +          +  +    L   D   ++  
Sbjct: 227 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 281

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    + V+  ++TV + G   TI+ +++   ++   L +                
Sbjct: 282 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 325

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV R+ L  +G     + + + P+ +          +   + S
Sbjct: 326 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 376

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
                  F            T    LA P +   + + A    G +    + SS+     
Sbjct: 377 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 428

Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYR 352
                ++   D G+ L   P V     +G+++  EVS     + +G+             
Sbjct: 429 PSFTQTIQYLDVGIKLEVEPQVYRDNDVGIKLALEVSNITKTIQSGNAQTGLSSLAYQIG 488

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A T++ L  G T +L GL+ D  +   + +P L ++P++G LF +   +  +TEI +
Sbjct: 489 TRSASTSLRLRDGETQILGGLISDQDRTSADKVPGLGQLPVVGRLFSDHNGDHVKTEIVL 548

Query: 413 AATPFLVKP 421
             TP +V+P
Sbjct: 549 QITPHIVRP 557


>gi|145634568|ref|ZP_01790277.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229844405|ref|ZP_04464545.1| competence protein E [Haemophilus influenzae 6P18H1]
 gi|145268113|gb|EDK08108.1| competence protein E [Haemophilus influenzae PittAA]
 gi|229812654|gb|EEP48343.1| competence protein E [Haemophilus influenzae 6P18H1]
          Length = 445

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|16272383|ref|NP_438596.1| competence protein E [Haemophilus influenzae Rd KW20]
 gi|260580502|ref|ZP_05848330.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
 gi|1169008|sp|P31772|COME_HAEIN RecName: Full=Competence protein E; AltName: Full=DNA
           transformation protein ComE; Flags: Precursor
 gi|1573410|gb|AAC22094.1| competence protein E (comE) [Haemophilus influenzae Rd KW20]
 gi|260092844|gb|EEW76779.1| pilus (MSHA type) biogenesis protein MshL [Haemophilus influenzae
           RdAW]
          Length = 445

 Score =  191 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|254283571|ref|ZP_04958539.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
 gi|219679774|gb|EED36123.1| general secretion pathway protein D [gamma proteobacterium NOR51-B]
          Length = 682

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 88/477 (18%), Positives = 160/477 (33%), Gaps = 61/477 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L+      +   L    P  A +     +NA +I+     IG+ ++I   ++   +   
Sbjct: 147 RLENVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRSNIGRIREIIDRMDSSAVRST 206

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V      V++     +           G       ++        ++  D L    I  
Sbjct: 207 EVVRLKYGVAEDIVQMLRTLETDEGEAGGAGEEVT-LVADKRTNSVVVTADELNSGRIKQ 265

Query: 123 LEMTLRRFIADSN----IRVEMVSDTVV---LHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           L   L   +  S     I +E  +   V   L  +++ I       +   +    S    
Sbjct: 266 LITYLDTPLEQSGNVKVIYLEYANAAEVAEVLTRVMQNITRLDDNGQRERSAGGNSTIEA 325

Query: 176 YANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
              +++             + V+  L+I    QV ++  I E+     +++G Q      
Sbjct: 326 DEGTNALIITADADEMAALEAVIARLDIR-RAQVLVEAIIVEMEVVEGQELGLQWLFAND 384

Query: 223 SSGPSKSFAADF------------------------------GGKFVSEGGDFSVKGVLD 252
           S     + +                                 G      G       V D
Sbjct: 385 SGFYGSNISTSSAQRARNAAIADAILPGDGDSSGDIGITDLAGALSQVPGATLGWGAVDD 444

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------G 303
             +   +L+ALE       L+ P+L  +  + A  T G Q  + T S +           
Sbjct: 445 DLTMTVILNALETQGNANILSTPSLLTLDNEEAYITVGQQVPFVTGSFTNTGSGDSARNP 504

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
             ++   + G+ L  TP V     + L I  EVS     +          RK +T V   
Sbjct: 505 FQTIERQNVGITLKVTPQVNEGDSVVLDIVQEVSSISQQLLVASDVITNERKIETKVLAS 564

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G  +VL GL+KD++Q  ++G+P+LS IP+LG LFRN      ++ + +   P +V+
Sbjct: 565 DGDIVVLGGLVKDEVQDSQQGVPILSSIPLLGRLFRNDVVEVSKSNLLVFIRPTIVR 621


>gi|309972408|gb|ADO95609.1| Outer membrane secretin ComE [Haemophilus influenzae R2846]
          Length = 445

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|297180471|gb|ADI16685.1| type II secretory pathway, component puld [uncultured gamma
           proteobacterium HF0010_05D02]
          Length = 666

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 87/476 (18%), Positives = 167/476 (35%), Gaps = 59/476 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L       +   L    P  A +     +NA +I+     I +  KI   +++  + + 
Sbjct: 133 RLDNVSAAKLIPVLRPLVPQQAHMAAYAPSNAIIISDIRANIDRIAKIIDRMDQSAVKKT 192

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V      V+      +                +A+++        ++  D +    I  
Sbjct: 193 EVVKLRYGVATDVVEMLKTLEKSRAGEGADANDEASLVADKRTNSVIVTADEVSIERIKG 252

Query: 123 LEMTLRRFIADS-NIRV------EMVSDTVVLHGMVRTIQDSQ-------RAVELSETFL 168
           L   L   +  S N+RV      +      VL  +++ +           RA   +++ +
Sbjct: 253 LVDYLDIPLEQSGNVRVMYLEYADATEVAEVLTRVMQNLARLDDESSGRTRAANAAKSTI 312

Query: 169 SQS--------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
                        +    ++ + V+  L+I    QV ++  I E+     +++G Q    
Sbjct: 313 EADEGTNSLIITADTDEMAALEAVIARLDIR-RAQVLVEAIIVEIDVTEGRELGLQWLFA 371

Query: 221 GSSSGPSKSFAADFGGKFVS---------------------------EGGDFSVKGVLDR 253
             S     + +    G   +                            G  F    V + 
Sbjct: 372 NDSGLYGSNISPARQGSNAAIAQAILPEDAASTEIGVRDLAGALSQVPGTTFGWGVVDEN 431

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GA 304
            +  T+L+ LE+      L+ P+L  +  + A  T G Q  + T S +            
Sbjct: 432 LTMTTILNTLEKQGNTNILSTPSLLTLDNEEAFITVGQQVPFVTGSYTNTGAANGVANPF 491

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            ++   + GV L  TP +     + + I  EVS       +        RK +T V    
Sbjct: 492 QTIQRENVGVTLQVTPQINEGDSVVMDIVQEVSSISQQALSASDVITNERKIETKVLAKD 551

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G  +VL GL+KDDIQ  ++G+PLLS IP++G LFRN   +  ++ + +     +++
Sbjct: 552 GDIVVLGGLVKDDIQDSQQGVPLLSGIPVVGRLFRNDVVSVTKSNLLVFIRSTIIR 607


>gi|145636296|ref|ZP_01791965.1| competence protein E [Haemophilus influenzae PittHH]
 gi|145270461|gb|EDK10395.1| competence protein E [Haemophilus influenzae PittHH]
          Length = 445

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|148263871|ref|YP_001230577.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
 gi|146397371|gb|ABQ26004.1| type IV pilus secretin PilQ [Geobacter uraniireducens Rf4]
          Length = 944

 Score =  191 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 68/434 (15%), Positives = 154/434 (35%), Gaps = 53/434 (12%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSP 84
           +    +   A   +    + K     +   + + L+    D++ +       A+V   + 
Sbjct: 523 MAAPAKEPEAFAELPSSAVSKQVTKKVYTGRKVTLEFSDADIRKIF---QLIAEVSNLN- 578

Query: 85  RTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
              +L   +V G  ++ L+     Q L++ +  +      E  + +    + ++ +   +
Sbjct: 579 ---FLIADDVSGTISIKLVNVPWDQALDVILDTKGLGMQREGNIVQIKPKAKMQSQADEE 635

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM------NLLNIA------ 191
                   R ++      +++   ++          S + ++      N + +       
Sbjct: 636 IAAKKARERAMELRTEVFDVNYAAVADIVTQFNTLKSERGIITSDVRTNRVIVKDIATAI 695

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSG 225
                        E QV ++  I E +   ++ +G Q  +                +  G
Sbjct: 696 EDMKSLLKNLDSPEKQVMIEARIVEAQTSFVRDLGVQWGLHYVDGSASVAGISRFDTGFG 755

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
              +     G          S   +      +  L A   A  I+ ++ P +  ++ + A
Sbjct: 756 GVVTPPPTSGTSGPGAAAGMSFGKLASNIQIDMRLSAAVTAEQIKIISSPRVVTLNNKPA 815

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             + G    Y+T S+    T     +  + L  TP + S G IG++I+            
Sbjct: 816 KISQGASIPYQTTSAEG--TKTEFVEAALTLEVTPHITSDGSIGMKIKAS----NNSAGT 869

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G  P    ++A T + + +G T V+ G+  D      +G+P L  IP+LG LF+++  N+
Sbjct: 870 GSPPPINKKEATTELLVKNGETTVIGGIYVDSETDNDKGVPFLQDIPLLGWLFKSNTKNK 929

Query: 406 EETEIFIAATPFLV 419
            + E+ I  TP ++
Sbjct: 930 SKNELLIFITPKII 943


>gi|90407251|ref|ZP_01215438.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
 gi|90311674|gb|EAS39772.1| type IV pilus biogenesis protein PilQ [Psychromonas sp. CNPT3]
          Length = 739

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 113/292 (38%), Gaps = 18/292 (6%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++  G V  + D         T +           + K ++ +L+I    QV ++  + 
Sbjct: 445 AILSSGDVSLLSDRGSVNVDKRTNMLLLKDTARVIKAVKNMIKVLDIPVR-QVVIEARMV 503

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS--------------FAADFGGKFVSEGGDFSVKG 249
            V   + +++G +   +  +   S S                 +      +    F +  
Sbjct: 504 TVNDSVGEELGIRWGNSNVNGDLSTSGSLDGLTNGSLDERLNVNLPVVGAAGRIAFRIAK 563

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +      +  L ALE+      +A P +T    Q+A    G +  Y   +SS GAT+V+ 
Sbjct: 564 LASGKILDLELSALEKENKAEIIASPRITTADQQTAYIEQGTEIPYVESASS-GATAVSF 622

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
               + L  TP +    +I L +         VI    G   S   ++  T V + +G T
Sbjct: 623 KKAVLSLQVTPQITPDNKIILDLVITQDSKGDVIPTGLGQAVSINTQEIKTQVLVGNGET 682

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IVL G+ +  I    + +P L  IP LGALFR +     ++E+ I  TP LV
Sbjct: 683 IVLGGIYQQRIIDTVQKVPFLGDIPFLGALFRTTIKENRKSELLIFVTPRLV 734


>gi|78222195|ref|YP_383942.1| type II and III secretion system secretin [Geobacter
           metallireducens GS-15]
 gi|78193450|gb|ABB31217.1| type II and III secretion system protein:NolW-like
           protein:Secretin/TonB, short-like protein [Geobacter
           metallireducens GS-15]
          Length = 870

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 73/447 (16%), Positives = 156/447 (34%), Gaps = 55/447 (12%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVE----IGKGKKISIGLNKVIILQV-PVDVQDVLV 71
            ++ P  ++     E+  +   +   +            +   + + L+    D++ +  
Sbjct: 434 ITAAPVASEPAKQTESERSAPVVVKSQAVSPTAAADGKKVYTGRRVTLEFSDADIRKIF- 492

Query: 72  SDPTKADVVVHSPRTMYLFGKNV-GQANVIL----IG---------------HDGKQMLN 111
                A+V   +    ++ G +V G  ++ L                      DG  +  
Sbjct: 493 --QLIAEVSNLN----FIVGDDVTGTISLKLVNVPWDQALDVILENKGLGMQRDGNIVQI 546

Query: 112 LDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                   +A  E   ++       +      V   +   V+        +     + + 
Sbjct: 547 RPKSKIMTLADEEQKAKKSREQGMELKTEVFDVNYAAVGDVVTQFNTLKSERGMISQDAR 606

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
           T            +  + ++  L+I  E QV ++  I E    + +++G Q  I      
Sbjct: 607 TNRVIVKDIAPVVAEMRNLLKSLDIP-EKQVMIEARIVEASSTVTQELGIQWGIHARDAN 665

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                       G     A   G          +   ++   S +  L AL     I+ +
Sbjct: 666 TIGVTNADVGFGGILTGLAPTAGTFGPGAAAGITFGKLISGGSLDLKLSALASGERIKII 725

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P +  ++ ++A  + G    Y TVS+    T     +  + L  TP + S G I ++I
Sbjct: 726 SSPKVVTLNNKAAKISQGQSIPYSTVSAEG--TKTEFVEAALTLEVTPHIASDGSISMKI 783

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           +   +          +P+   ++A T + + +G T V+ G+  D+  Q  +G+P    IP
Sbjct: 784 KATNNSAAPAPTGA-VPAINKKEATTELLVRNGETTVIGGIYVDNDSQADQGVPFFKDIP 842

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LG LF++S   + + E+ I  TP +V
Sbjct: 843 LLGWLFKSSNTQKIKNELLIFITPKIV 869


>gi|319898044|ref|YP_004136241.1| competence protein e [Haemophilus influenzae F3031]
 gi|317433550|emb|CBY81934.1| competence protein E [Haemophilus influenzae F3031]
          Length = 445

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGIRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTA 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|148262762|ref|YP_001229468.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
 gi|146396262|gb|ABQ24895.1| general secretion pathway protein D [Geobacter uraniireducens Rf4]
          Length = 641

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 69/321 (21%), Positives = 114/321 (35%), Gaps = 37/321 (11%)

Query: 137 RVEMVSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---- 190
             +      VL G+V   +   +      +             + +  K  N L I    
Sbjct: 278 NADATEVAKVLDGVVKGSSAAAAPSQPGAANAPQQSPFEGGKISITPDKATNSLVIMASP 337

Query: 191 --------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--- 233
                             QV ++  IAEV    LK +G Q  + G +S  + + A     
Sbjct: 338 TDYQNLIQVIQKLDKRRRQVFVEAVIAEVSLSKLKDLGVQWGVLGGASNGTATAAGLYDP 397

Query: 234 --------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                        +   G           +F  VL AL+   A+  L+ PT+     + A
Sbjct: 398 QDTFTTLLTALANLKSAGITIPDLTGTALNFSAVLRALDSLGAVNVLSTPTIMTSDNKEA 457

Query: 286 SFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
               G    +      + +++    S+   D G+ L  TP +     + L I  E+S   
Sbjct: 458 EIFVGENVPFKGNVTISNTTTPSFQSIERKDTGITLKITPQISEGEYVKLDIYQEISAIS 517

Query: 341 IGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               +         R A T+V +    T+V+ GL++D  Q+    IPLL  IP LG LF+
Sbjct: 518 NTTVSGASDLITTKRSAKTSVAVKDKDTMVIGGLIQDREQETVNKIPLLGDIPFLGWLFK 577

Query: 400 NSRFNREETEIFIAATPFLVK 420
                R++T + I  TP +V+
Sbjct: 578 FKNTTRQKTNLLIVLTPRIVR 598


>gi|292670351|ref|ZP_06603777.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
 gi|292648082|gb|EFF66054.1| conserved hypothetical protein [Selenomonas noxia ATCC 43541]
          Length = 426

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 88/436 (20%), Positives = 168/436 (38%), Gaps = 31/436 (7%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
           T   ++ + L S   + A +          +    + + +   + + ++     +V   V
Sbjct: 2   TIAALVCMMLLSVPAAAAPVTINVTGGD--VRTVLLAVARMGNLPLIVDD----RVDGTV 55

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD----GKQMLNLDILIERDIAH 122
              L  +  +   +V + R +++  ++ G    +  G D     +++    +        
Sbjct: 56  TAHLTGEAEEVLHLVAAARGIHI-ERHGGV--FLAFGADARGENRRVHTYAVRFADPEEL 112

Query: 123 LEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
                     +     V   +D     G        QR +  + T        +    + 
Sbjct: 113 AHAANLSLTGEGKRAIVSKNNDERENEGSDSDSDAQQRVLVDTATNTLLFYGTESEALAV 172

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------TGSSSGPSKSFAA 232
           +++++ L+     QV+L+  +  + ++  KQ+G   S               G  +    
Sbjct: 173 REIISALD-REPQQVSLEARVVAISKEAAKQLGVDWSWSSLPQYPRVQYDRGGSWRVGER 231

Query: 233 DFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           + G    S  G        +     F +   + AL      + LA P +T I G+ A   
Sbjct: 232 NAGTGGTSAPGIIRFGRGPEGLPYEFYYSAAIRALITEGKAKMLARPNVTTIQGREALIN 291

Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            G +     V++S   T+  +   + G++L +TP V + G I  R+ TEVS PV  V   
Sbjct: 292 IGAEVPVPRVATSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVY-VEDL 350

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
               ++ R ADTTV L +G T+V+ GL+  D  +    IP L  +P+LGA FR+ R +R 
Sbjct: 351 KAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTSRT 410

Query: 407 ETEIFIAATPFLVKPV 422
           ETE+ I  T  ++   
Sbjct: 411 ETELMIFLTAHVLDET 426


>gi|251788920|ref|YP_003003641.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247537541|gb|ACT06162.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 716

 Score =  190 bits (483), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 116/312 (37%), Gaps = 37/312 (11%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
           +  IAE++      +G Q +   +      +  A       +                  
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMIQFPNSNASNNIPISTAMIGTDQFRSDGTLTTAY 462

Query: 242 ----GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
               G    +     R ++  +L AL        LA P++  +    A+F  G +     
Sbjct: 463 ANALGSFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLT 522

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---M 348
                  S S    +V     G+ L   P +     + L+I+ EVS    G ++ +    
Sbjct: 523 GQQTTMGSGSNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNSSTNSSLG 582

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R  +  V + +G T+V+ GLL     +    +PLL  IP LG+LFR+   +  + 
Sbjct: 583 VTFNTRTVNNAVMVTNGETVVVGGLLDKSTIETNNKVPLLGDIPWLGSLFRSKSQSMSKR 642

Query: 409 EIFIAATPFLVK 420
            + +   P +++
Sbjct: 643 NLMLFLRPTIIR 654


>gi|148997|gb|AAA25012.1| A mini-Tn10kan insertion in ORF E causes a deficiency in
           transformation. ORF E is 24% identical to the products
           of the filamentous phage gene IV and of pulD, a gene in
           the pulC operon of Klebsiella; ORF; putative
           [Haemophilus influenzae]
          Length = 441

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|294012239|ref|YP_003545699.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292675569|dbj|BAI97087.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 543

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 87/257 (33%), Positives = 123/257 (47%), Gaps = 10/257 (3%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +I+ SS        A       +  G       L      + L ALER   ++TLAEPTL
Sbjct: 260 NISNSSVTGRGGNGALDLLLPTTAFGALGWVTNLGGLRISSALDALERKGLVKTLAEPTL 319

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            A+SG++ASF +GG+       +  G        +V    +GV L FTPTVLS G I L 
Sbjct: 320 VALSGETASFLAGGEFPIPVAQNGNGTGSGSNSITVEFKPFGVSLGFTPTVLSDGIINLV 379

Query: 332 IQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           ++ EVS         +N   +P    R+A T VEL  G +  +AGLL++D Q     IP+
Sbjct: 380 VEPEVSSIDPSASVQINGLVIPGLLTRRAKTVVELRDGQSFAIAGLLRNDFQDTIRQIPV 439

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PI+GALFR+S F ++ETE+ +  TP LVKP+   D+  P D      +   F   R
Sbjct: 440 LGSLPIIGALFRSSGFQKQETELVMIVTPRLVKPMRADDVRLPTDRVGNPHELDLFLMGR 499

Query: 448 VNKIYGPKEASEVEGQN 464
            +K  G    +      
Sbjct: 500 TDKAVGINPLNPDAMPP 516



 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 101/244 (41%), Gaps = 12/244 (4%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M   L +     + LP   +A  A +N+         ++ + LNK  +L V       LV
Sbjct: 1   MLASLLALGAGASLLPMQAQAQVASLNV--SNANHAGQLDVPLNKSQVLTVDRPFAKALV 58

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +   ADV+  + R++Y+ GK +G  ++ L       +  +D+ +  D+  L+  L   I
Sbjct: 59  GNAEIADVLPMTNRSVYVLGKKMGTTSLTLYDSRNMMIAVVDVAVGPDVVTLKRQLSELI 118

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
               I   + +D ++L G V +     +AV ++ T+             S+K++N+L++ 
Sbjct: 119 PGEQIGARISNDALILTGTVSSAAAVDQAVRIASTYAGG----------SEKIVNMLSVG 168

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L+V  +EV R   K++G  H+   +S         +        G   S+    
Sbjct: 169 ASQQVMLEVRFSEVNRQAAKELGLNHTFLNNSGKFVGGMGENGLAGVPVTGNTSSMGSGT 228

Query: 252 DRFS 255
              S
Sbjct: 229 SNSS 232


>gi|78484595|ref|YP_390520.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78362881|gb|ABB40846.1| Type II secretion pathway protein D [Thiomicrospira crunogena
           XCL-2]
          Length = 703

 Score =  190 bits (482), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 74/399 (18%), Positives = 141/399 (35%), Gaps = 43/399 (10%)

Query: 55  NKVIILQVPVDVQDVLVSDPT---------KADVVVHSPRTMYLFGKNVGQANVILIGHD 105
           NK   +        V++S             AD+ V  P          G+  VI + + 
Sbjct: 216 NKQFNVSFDERSNRVILSGDQDTRREMRALIADLDVSVPSE--------GRVQVIYLHYA 267

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
               L   +        L  ++      S   +   +   V    +       R    +E
Sbjct: 268 KAAELVPVLQKIATNRSLLSSVSSDAKTSEATIPDATGNGVQVNQLDDKTLKSRISIEAE 327

Query: 166 TFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
             ++           S  K V+  L+I    QV ++  + EV      ++G +    G +
Sbjct: 328 ERMNAIIISAPPGVVSVLKTVIKQLDIR-RAQVLIEAILVEVTETKQAELGVEWGAAGPN 386

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLD-------------RFSFETVLHALERATAIR 270
                +F+        + G   +    +                 +  ++ AL   +   
Sbjct: 387 GVGLINFSGTIPTIIGNAGNPAAQANAIGTGVNAAFGEVSADGTGWGALIRALNSDSEAN 446

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPT 321
            L+ PTL  +  + A    G +  ++T S +             ++   + G+ L  TP 
Sbjct: 447 ILSTPTLLTLDNEEAEIVVGKEVPFQTGSYTSTGTSSTPTNPFNTIERKNVGLSLKVTPQ 506

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I  E+S+ +   +A D+     R+  T V +  G  IVL GLL +   ++
Sbjct: 507 INEGDEVFLEINQEISDVIPKGDAVDV-QTSKRQIKTRVIVGDGNVIVLGGLLTEKETEV 565

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++ +P L  IP LGALFR++   RE+  + +   P +V+
Sbjct: 566 EKKVPGLGDIPGLGALFRSTSNEREKVNLMVFLRPVIVR 604


>gi|294055809|ref|YP_003549467.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615142|gb|ADE55297.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 595

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 81/499 (16%), Positives = 169/499 (33%), Gaps = 82/499 (16%)

Query: 10  TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV 69
            +  + + S++  + ++      ++ V+     + G  +  ++   + I +  P +   V
Sbjct: 66  AVAGVSVESADAEIPEVTVALPEDSTVVLDLPGQTGSVEAGTVEEEETISVDFPDEDVRV 125

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           ++ +   A++   +   + +    VG+ ++ L     +++  + +         +  + +
Sbjct: 126 ILFN--VAELFDLN---LVVPEALVGRTSIKLHNVTWREVFEVVLEPLGYAYIEDRNIIK 180

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
             + ++I  E V+ TV+            RA ++  +              +    NLL 
Sbjct: 181 VKSVADIAAEPVTTTVI-------AIKHARAADIMGSIAPLVDGAAGGKMVADSRKNLLV 233

Query: 190 I------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
           I                     +QV ++  + EV  + L+ +G   S        +  F 
Sbjct: 234 ITERPSQIQKIRDLVDEVDRATEQVMIETKLVEVFDEDLENLGVNWSSLNGYGLSAGPFT 293

Query: 232 A---------------------DFGGKFVSEGGDFSVKGV-------LDRFSFETVLHAL 263
                                 +   +FV+     S+           +   F  +L AL
Sbjct: 294 RQWDRSREKSTGTTTEFSPATDNQPAQFVTGNLVDSLASTSRLDTAVFNADQFNVILSAL 353

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHF 318
           E     + +  PT+  ++ + A F  G  +      +   + +  A  V     GV L  
Sbjct: 354 ETLNDTKLVTNPTVVVMNKRPAKFEVGRDYPIREITFNQETGTYEAGGVEETFIGVELEV 413

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TP VL  G I L +   +S     V +     P    R  DT V +  G T+ L GL   
Sbjct: 414 TPEVL-GGNIHLDVDPTISALDGTVESFGAIDPIVARRSVDTEVIIKDGYTLALGGLADT 472

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT----------------PFLVK 420
                   +P+L  IP LG LF +   +  +  + I  T                P +++
Sbjct: 473 QEVNSGTKVPILGDIPGLGRLFSSDSDSLGKRNLIIFITAKTLNPEGSDYRDVIDPRMIE 532

Query: 421 PVAMRDLSRPDDHYSVEDD 439
            + + D   P  H+   +D
Sbjct: 533 EMGITDYEVPGYHFREGND 551


>gi|310765643|gb|ADP10593.1| Protein transport protein hofQ precursor [Erwinia sp. Ejp617]
          Length = 414

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%)

Query: 8   FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
              ++ +++   +P  A + P     + A +      +   +++++ +   +   + + +
Sbjct: 1   MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60

Query: 67  QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115
           +DV        ++        +      + +F +      Q    +   + +QML L   
Sbjct: 61  KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           I   +     ++   +     R+     ++ L     ++        L++T         
Sbjct: 119 ILTLVHADAASVNTSLQHERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234
                 +  ++ L++   +Q+ L   I  +  + L+++G    ++G +        +   
Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222

Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    G        LD    +  L ALE       +A P L     Q+AS   G +
Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350
             Y+  + ++G+T++   +  + +  TP V + GRI   L I   V    +     ++ +
Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++ DT V L  G T+ L G+ +         +P L  IP+LG LFR+    ++  E+
Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402

Query: 411 FIAATPFLVK 420
            I  TP L++
Sbjct: 403 VIFITPRLIR 412


>gi|301155450|emb|CBW14916.1| predicted fimbrial transporter [Haemophilus parainfluenzae T3T1]
          Length = 460

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 17/260 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I                   S    +   +F    
Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVSGSLDANGFSNIGDNLNVNFATTV 254

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           +      SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP
Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGIDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434

Query: 417 FLVKPVAMRDLSRPDDHYSV 436
            ++K     ++++ + H+  
Sbjct: 435 HILKQGERMEMAKKEKHFKQ 454


>gi|312961914|ref|ZP_07776411.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311283724|gb|EFQ62308.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 740

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 36/317 (11%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------Q 195
             +   A + +         +     +++K  N L +                      Q
Sbjct: 416 EAEQDNAEQGTRDDAPAKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQ 475

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVK 248
           V ++  I EV+      +G Q  +   +   + +  A+  G   + G          S+ 
Sbjct: 476 VQIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVANASGSQGALGRGGAGLGAADSLF 535

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-- 306
                 + +  LHALE     + L+ P+L  ++ Q A    G        + +TG +   
Sbjct: 536 YSFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTT 595

Query: 307 ---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MPSYRVRKADTT 359
              V     GV+L   P +   G + + IQ +VS+     +        P    R   T 
Sbjct: 596 LSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASTNGDTPANPRISTRSVSTQ 655

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + SG T++L GL+K D       +P L KIP L  LF ++  +++ TE+ +  TP ++
Sbjct: 656 VAVQSGQTVLLGGLIKQDNADTVSAVPYLGKIPGLRWLFGSTSKSKDRTELIVLITPRVI 715

Query: 420 KPVAMRDLSRPDDHYSV 436
              +     +  D Y  
Sbjct: 716 --TSSSQARQVTDDYRQ 730


>gi|319789871|ref|YP_004151504.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
 gi|317114373|gb|ADU96863.1| general secretion pathway protein D [Thermovibrio ammonificans
           HB-1]
          Length = 638

 Score =  189 bits (481), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 71/383 (18%), Positives = 129/383 (33%), Gaps = 45/383 (11%)

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-------------------L 115
             A       R  Y F  +     + ++G     +  L +                   L
Sbjct: 222 DIAKTFPLPGREYYHFAVDGRTNTLYVVGTPKTIVRVLQLCEKLDRPIKVKEGDIHIIKL 281

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
                  +   L     D             L G V+ + D      +           +
Sbjct: 282 NYAFAEDMAKVLDSLFKD------TSQKKFGLSGPVKVVADKGSNSLIVLASPQDFAVVK 335

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFA 231
                   V+  +++    QV ++V I E+  D L Q+G +            G S    
Sbjct: 336 D-------VVKSIDVKRP-QVFVEVQIVEMSMDKLLQMGVEWKFLSRGNYVPFGGSLYGN 387

Query: 232 ADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                 + S      +              +L+A  +   +  +A P +  +  + A   
Sbjct: 388 LPLQPGYPSASPGLLLGIAKWRDGVPDIGLLLNAYAKEGGVNVIATPQILTLDNEEAEIN 447

Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
                 Y T     +++    S    D G+VL  TP + + G + L++  +V + V   N
Sbjct: 448 ISKVIPYSTGVKYDTNNNPVISYDYKDVGIVLKITPHITASGEVRLKVYEKVEDVVGYAN 507

Query: 345 AG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           A    P    R+A TTV++  G T+V+ GL+K       E +P+L  IP++G LF+ +  
Sbjct: 508 ADQTAPITSKREAKTTVDVHDGQTLVIGGLIKRKKLTTVEKVPVLGSIPVIGNLFKKTGH 567

Query: 404 NREETEIFIAATPFLVKPVAMRD 426
             E+T + +  TP +V+      
Sbjct: 568 QIEKTNLLVFITPHIVRNTEEEQ 590


>gi|325576567|ref|ZP_08147285.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
 gi|325161130|gb|EGC73245.1| type IV pilus secretin PilQ [Haemophilus parainfluenzae ATCC 33392]
          Length = 460

 Score =  189 bits (480), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 57/260 (21%), Positives = 102/260 (39%), Gaps = 17/260 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I                   S  S +   +F    
Sbjct: 195 EQIVIEARIVTITDESLKELGVRWGIFNPTEAAHRVGGSLDANGFSNISNNLNVNFATTV 254

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 255 TPAGSLALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 314

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           +      SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGNRVAYGQNEVVSIDKQEI 374

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP
Sbjct: 375 NTQVFAKDGETIVLGGVFHDTITKGVDKVPLLGDIPGIKRLFSKESERHQKRELVIFVTP 434

Query: 417 FLVKPVAMRDLSRPDDHYSV 436
            ++K     +++R + H+  
Sbjct: 435 HILKQGERMEMARKEKHFKQ 454


>gi|229591502|ref|YP_002873621.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
 gi|229363368|emb|CAY50509.1| general secretion pathway protein D [Pseudomonas fluorescens SBW25]
          Length = 740

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 118/316 (37%), Gaps = 36/316 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QV 196
            +   A + +         +     +++K  N L +                      QV
Sbjct: 418 AEQDDAEQGATEDAPTKSLDAGTRITAQKSSNQLLVRTRPVQWKEIESAIKRLDNPPLQV 477

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------SVKG 249
            ++  I EV+      +G Q  +   +   + +   +  G   + GG         S+  
Sbjct: 478 QIETRILEVKLTGELDLGVQWYLGRLAGNSTSTTVGNTAGSQGALGGGGAGLGAADSLFY 537

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--- 306
                + +  LHALE     + L+ P+L  ++ Q A    G        + +TG +    
Sbjct: 538 SFVSSNLQVALHALETNGRTQVLSAPSLVVMNNQPAQIQVGDNIPISQTTVNTGTSDTTL 597

Query: 307 --VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTV 360
             V     GV+L   P +   G + + IQ +VS+         +  + P    R   T V
Sbjct: 598 SSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDAQDQASSSNDTQNNPRISTRSVSTQV 657

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++ 
Sbjct: 658 AVQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI- 716

Query: 421 PVAMRDLSRPDDHYSV 436
             +     +  D Y  
Sbjct: 717 -TSSSQARQVTDDYRQ 731


>gi|330958220|gb|EGH58480.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 773

 Score =  189 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 112/305 (36%), Gaps = 19/305 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G  +++  S R      +               +  +  L+     QV ++  I EV+ 
Sbjct: 456 TGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVKL 514

Query: 208 DILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                +G Q         S T  +   +       G    +     S        + +  
Sbjct: 515 TGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSIGTGGAALAATDSFFYSFVSNNLQVA 574

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGV 314
           L ALE     + L+ P+L  ++ Q A    G        +     S+T  +SV     GV
Sbjct: 575 LRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTTVNTNASATTLSSVEYVQTGV 634

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS+     N+      P    R   T V   SG T++L 
Sbjct: 635 ILDVVPRINPGGLVYMDIQQQVSDADNSANSTDLNGNPRISTRSVSTQVAAQSGQTVLLG 694

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++   +     +  
Sbjct: 695 GLIKQDNAESVSAVPYLGRIPGLKWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 752

Query: 432 DHYSV 436
           D Y  
Sbjct: 753 DDYRQ 757


>gi|222056148|ref|YP_002538510.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
 gi|221565437|gb|ACM21409.1| type IV pilus secretin PilQ [Geobacter sp. FRC-32]
          Length = 911

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 69/405 (17%), Positives = 148/405 (36%), Gaps = 53/405 (13%)

Query: 55  NKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNL 112
            + + L+    D++ +       A+V   +    +L   +V G  ++ L+     Q L++
Sbjct: 519 GRKVTLEFSDADIRKIF---QLIAEVSNLN----FLIADDVTGTISIKLVNVPWDQALDV 571

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            +  +      E  + +    + ++ +   +        R ++      +++   ++   
Sbjct: 572 ILDTKGLGMLKEGNIVQIKPKAKMQSQADEEMATKKARERGMELRTEIFDVNYAAVTDIA 631

Query: 173 RNQYANSSSKKVM------NLLNI------------------AGEDQVTLKVTIAEVRRD 208
                  S + ++      N + +                    E QV ++  I E    
Sbjct: 632 TQFGTLKSDRGIISTDARTNRVIVKDITTAIEDMRMLLKSLDTPEKQVMIEARIVEASTS 691

Query: 209 ILKQIGFQHSITG--------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            ++ +G Q  I                +  G   + A   G          S   +    
Sbjct: 692 FVRDLGVQWGIHYIDGSASVAGISRLDTGFGGQVAIAPTSGTSGPGAAVGMSFGKLASNI 751

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
             +  L A   A  I+ ++ P +  ++ + A  + G    Y+T S+    T     +  +
Sbjct: 752 QLDMRLSAAVTADQIKIMSTPRVVTLNNKPAKISQGASIPYQTTSAEG--TKTEFVEAAL 809

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP + S G IG++I+            G  P    ++A T + + +G T V+ G+ 
Sbjct: 810 TLEVTPHITSDGSIGMKIKAS----NNSAGTGSPPPINKKEATTELLIKNGETTVIGGIY 865

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            D   +  +G+P L  IP+LG LF+++  N+ + E+ I  TP +V
Sbjct: 866 VDSDTESDKGVPFLQDIPLLGWLFKSNTKNKSKNELLIFITPKIV 910


>gi|87122896|ref|ZP_01078763.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
 gi|86161822|gb|EAQ63120.1| type IV pili biogenesis protein PilQ [Marinomonas sp. MED121]
          Length = 390

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 52/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ +   IA+V+  +  QIG +     +    S +          S     S       
Sbjct: 165 RQIEISARIAQVQNAVESQIGVEWQGQLAGDTLSTASG-LVDLATTSSTSGLSFAVAKSD 223

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  LE       ++EP +    GQ A   SG +  Y+T  S    T V     G
Sbjct: 224 DLLALNLSFLESNGLANIVSEPKIVTAEGQMAKIESGTEVPYQT--SDDEGTHVEFKQAG 281

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L   P V    ++ L ++  + +  +G     +PS    + +T V + +  T+VL G+
Sbjct: 282 LTLEVIPFVKQGDKVQLSLK--IYQDAVGEMYNGVPSIETNRINTQVLVGNQETLVLGGI 339

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +D++ +    +P    +P +GALFR+    +E+ E+ +  TP L++
Sbjct: 340 YRDEVWESTSKVPFFGDLPFVGALFRHQAQRQEKVELLVFITPKLLQ 386


>gi|330969406|gb|EGH69472.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 325

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 76/283 (26%), Positives = 124/283 (43%), Gaps = 22/283 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVS 240
             QV   +   EV R  LK+        GSS+              +             
Sbjct: 40  PSQVQTDIRFIEVSRTKLKEASTSIFGKGSSNFLFGAPGTVPGVNVTPGAVGGITPSIPL 99

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              +F++           +++A+E +    TLA P+L A++GQSASF +GG+      + 
Sbjct: 100 NNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNGQSASFLAGGEFPVPVPNG 159

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKA 356
                S+   ++GV L  TPTV+   RI L++  EVSE      I +    +P+  +R+ 
Sbjct: 160 EGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFSAGITIAGTTVPALNIRRT 219

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT++ L  G + V++GL+        +  P L  IPILGA FR+S+  R+E E+ +  TP
Sbjct: 220 DTSIALADGESFVISGLISSSNSGSVDKFPGLGDIPILGAFFRSSQIQRDERELLMIVTP 279

Query: 417 FLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIYG 453
            LV+P+A      S P +          + +F      ++  G
Sbjct: 280 HLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRDG 322


>gi|283480139|emb|CAY76055.1| Protein transport protein hofQ precursor [Erwinia pyrifoliae DSM
           12163]
          Length = 414

 Score =  189 bits (479), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 161/430 (37%), Gaps = 35/430 (8%)

Query: 8   FFTMMSIFLFSSNPSVA-KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
              ++ +++   +P  A + P     + A +      +   +++++ +   +   + + +
Sbjct: 1   MLRILGLWMALISPLAAVQPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRL 60

Query: 67  QDV--------LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDIL 115
           +DV        ++        +      + +F +      Q    +   + +QML L   
Sbjct: 61  KDVPWRQALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDR 118

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           I   +     ++   +     R+     ++ L     ++        L++T         
Sbjct: 119 ILTLVHADAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT--------- 169

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF- 234
                 +  ++ L++   +Q+ L   I  +  + L+++G    ++G +        +   
Sbjct: 170 ------EHWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLR 222

Query: 235 --GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    G        LD    +  L ALE       +A P L     Q+AS   G +
Sbjct: 223 VDLATGRPAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTE 282

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPS 350
             Y+  + ++G+T++   +  + +  TP V + GRI   L I   V    +     ++ +
Sbjct: 283 IPYEVSTGNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLT 342

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++ DT V L  G T+ L G+ +         +P L  IP+LG LFR+    ++  E+
Sbjct: 343 IDKQEIDTQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRREL 402

Query: 411 FIAATPFLVK 420
            I  TP L++
Sbjct: 403 VIFITPRLIR 412


>gi|293416792|ref|ZP_06659429.1| transporter HofQ [Escherichia coli B185]
 gi|291431368|gb|EFF04353.1| transporter HofQ [Escherichia coli B185]
          Length = 412

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/425 (20%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    PSV    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + +K +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEKWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|330862294|emb|CBX72455.1| hypothetical protein YEW_HH31870 [Yersinia enterocolitica W22703]
          Length = 271

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 85/264 (32%), Positives = 139/264 (52%), Gaps = 20/264 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           MN + + G +QV +K+TIAEV +D  + IG   S  G+ SG  + F  +   KF ++G  
Sbjct: 1   MNKIKLPGSNQVNVKLTIAEVSKDFSENIGMDWSTIGNFSGSFQFFKLNGSNKFNAKG-- 58

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                         ++HA+   +  R LAEP L+ +SG+SASF  GG+     V+++  +
Sbjct: 59  -----------ISALVHAINDDSIARVLAEPNLSVLSGESASFLVGGELPL--VNTTANS 105

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVE 361
           T +T   +G+ L+    V +  RI +++  EVS              PS+R RKA TT+E
Sbjct: 106 TVITYKQFGIKLNIGAKVNAKKRIRIKLDEEVSSVDKVFNIDGGDAYPSFRTRKAATTLE 165

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G + +L GL+    ++  + IP +  IPILGA FRN+   + +TE+ + AT  LV+P
Sbjct: 166 LGDGESFILGGLISSSEREALKKIPFIGDIPILGAFFRNAETRKNQTELVVVATVNLVRP 225

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFF 445
           V+ +++  P  ++      + FF 
Sbjct: 226 VSEKEVELP--NFMHTSTLERFFN 247


>gi|90406756|ref|ZP_01214949.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
 gi|90312209|gb|EAS40301.1| putative type II secretory pathway, component EpsD [Psychromonas
           sp. CNPT3]
          Length = 658

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 107/259 (41%), Gaps = 22/259 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKF 238
             V+  L+I    QV ++  I E+       +  Q + +       G   +      G +
Sbjct: 333 SSVIRKLDIR-RAQVLVEAIIVEISEGNGINLSVQFATSAGGSQFHGNGATTGDAINGAY 391

Query: 239 ----------VSEGGDFSVKGVLD--RFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                     VS        GV+     ++  +L AL  +T    LA P++  +  Q AS
Sbjct: 392 QIRHDGDLSDVSSAISKIAGGVVGYLGSNWGVMLQALSSSTGSNILATPSIMTLDNQEAS 451

Query: 287 FTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           F  G +         +  +     ++   + GV L+ TP +     + L I+ EVS    
Sbjct: 452 FLVGDEVPVLTGSTSSDDNDNPFQTIERKEIGVKLNVTPQINEGDSVQLVIEQEVSSIKD 511

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N  D+  +  R   TTV + SG TIV+ GL+ + + +  + IPLL  IP LG LF+++
Sbjct: 512 STNTVDV-VFSTRSVKTTVLVKSGQTIVIGGLIDEKVIESVDKIPLLGDIPWLGNLFKST 570

Query: 402 RFNREETEIFIAATPFLVK 420
           R   E+  + I     +++
Sbjct: 571 RNTTEKRNLMIFLRATIIR 589


>gi|121533454|ref|ZP_01665282.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
 gi|121308013|gb|EAX48927.1| type II and III secretion system protein [Thermosinus
           carboxydivorans Nor1]
          Length = 414

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/407 (20%), Positives = 164/407 (40%), Gaps = 35/407 (8%)

Query: 21  PSVAKLPPIKEA-NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           P++A  P +      A +      +    ++SI  +  +  ++ + ++++   +     V
Sbjct: 36  PALAAGPMVNMNVTDAEVRDVLTALASVGRVSIVADDSVTGKITIQLRNI-PFETALDLV 94

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
                 T Y  G  +  A+   +      +  + +        ++ +L   I D  ++V+
Sbjct: 95  TKTKGLTYYKTGNVIVVASADKLSKGFGSVQIIKLK-YARADEVKKSLALVIPDERLKVD 153

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
             ++++V  G     +  ++A+                          L++   +QV+L+
Sbjct: 154 EATNSLVFSGSPAESEALRQALA------------------------ELDVP-YEQVSLE 188

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FS 255
             +  + R+  K +GF    +G  +       +          G        D     F+
Sbjct: 189 AQVVAINRNAAKDLGFDWQWSGLPANTEFDSTSGTTKTTREYPGVIKFGKAYDGTPYEFT 248

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYG 313
           F+  L AL  +   + LA+P +T I+G+ A    G +       +  G T+  +   D G
Sbjct: 249 FQAKLSALITSGEAKLLAKPKITTINGKEAKILIGDRIPVLVERTENGKTTTTIEYIDAG 308

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L +TP + + G I   + TEVS P + V          R+A T V +  G T+V+ GL
Sbjct: 309 IKLTYTPRINADGYITAAVHTEVSTPTL-VPEMKAYRVTTREATTNVRMKDGDTMVIGGL 367

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + ++    K  +PLLS +P+LG LF +    + ETE+ I  T  +VK
Sbjct: 368 ISNEESGGKNRVPLLSDLPVLGKLFESVHKTKNETEVVIFLTARIVK 414


>gi|153871180|ref|ZP_02000417.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072356|gb|EDN69585.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 442

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 114/314 (36%), Gaps = 35/314 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   + +          T             + + V+  L+I    QV ++  IAE+  
Sbjct: 92  KGKSPSPEIKTNIQADESTNSLVITATPKVQQNLQTVIRQLDIR-RAQVLVEAVIAEIST 150

Query: 208 DILKQIGFQHSITGS----------------------SSGPSKSFAADFGGKFVSEGGDF 245
           D  +++G Q  + G+                      S+G   +  +      +  G   
Sbjct: 151 DTARELGVQWLLYGNKGTAPFGLSNFDNSGTRIADLASAGYLANNNSSTSLPNIGAGAFL 210

Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
            +    + F +F  +L AL   T    L+ P+L  +  Q A    G    + T   +   
Sbjct: 211 GLGRFNNSFLNFGVLLRALASDTNTNVLSTPSLLTLDNQEAEIVVGQNVPFVTGQYTNTG 270

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                       ++   D G+ L   P +     + L I+ EVS       A        
Sbjct: 271 TSGGGGVTNPFQTIQREDIGIKLRVKPQINEGNAVKLEIEQEVSSLSRSSQATTDIVTNK 330

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R   TTV +  G  +VL GL+ +D+QQ  + +P L  +PI+G LFR+    + +  + + 
Sbjct: 331 RTIKTTVIVEDGNMVVLGGLIDEDLQQTAQKVPGLGDLPIIGHLFRSRSTQKIKRNLMVF 390

Query: 414 ATPFLVKPVAMRDL 427
             P +++  A  ++
Sbjct: 391 LHPVIIRDAASENI 404


>gi|331685028|ref|ZP_08385614.1| protein transport protein HofQ [Escherichia coli H299]
 gi|331077399|gb|EGI48611.1| protein transport protein HofQ [Escherichia coli H299]
          Length = 412

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTALGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|218706981|ref|YP_002414500.1| outer membrane porin HofQ [Escherichia coli UMN026]
 gi|293406969|ref|ZP_06650893.1| hofQ [Escherichia coli FVEC1412]
 gi|298382711|ref|ZP_06992306.1| hofQ [Escherichia coli FVEC1302]
 gi|218434078|emb|CAR14995.1| fimbrial transporter [Escherichia coli UMN026]
 gi|291425780|gb|EFE98814.1| hofQ [Escherichia coli FVEC1412]
 gi|298276547|gb|EFI18065.1| hofQ [Escherichia coli FVEC1302]
          Length = 412

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 84/420 (20%), Positives = 158/420 (37%), Gaps = 19/420 (4%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ ++  +   V +
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVRGTVSL 60

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
            + DV          VV S     L  +  G   + +           D +  ++     
Sbjct: 61  HLTDVPWKQA--LQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQAR 110

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
                 + + NI ++      +     + +           T       N+ A S+ ++ 
Sbjct: 111 AQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALSALEQW 170

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  +++    QV L   I  +    L+++G + ++  +            G         
Sbjct: 171 VAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATAT 229

Query: 245 FSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  
Sbjct: 230 THVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGE 289

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T 
Sbjct: 290 SGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQ 349

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 350 VEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|94959236|gb|ABF47508.1| GspD [Leptospira biflexa serovar Patoc]
          Length = 595

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%)

Query: 38  NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
            +SD E+   K I+  + L     +++   ++ V   D     ++  +  T+   G    
Sbjct: 139 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 196

Query: 96  QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142
              ++ +           G      DI I     +    L        + D+ +      
Sbjct: 197 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 256

Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                                  V   QD  +AV   E+               KK++ +
Sbjct: 257 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 316

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L+     QV L+V I E+    L   G        + G   +  A  GG     G   +V
Sbjct: 317 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 375

Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             +                 +L+A         L+ P +  +  Q A    G     +T 
Sbjct: 376 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 435

Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348
           + + G          +      G+ L FTP +    RI L +  E+           G  
Sbjct: 436 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 495

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P++  R   TT+ + +  TIV+ GLL +D Q+  + IP+L +IP+LG LFR +     +T
Sbjct: 496 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 555

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +  TP ++      D
Sbjct: 556 NLMVFLTPHILDDRDKSD 573


>gi|293412807|ref|ZP_06655475.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291468454|gb|EFF10947.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 412

 Score =  188 bits (478), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P      P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGAQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLKYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|148827632|ref|YP_001292385.1| competence protein E [Haemophilus influenzae PittGG]
 gi|148718874|gb|ABR00002.1| competence protein E [Haemophilus influenzae PittGG]
          Length = 445

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 186 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 245

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 246 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 305

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 306 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 365

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 366 NTQVFAKGGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 425

Query: 417 FLVKP 421
            ++K 
Sbjct: 426 HILKA 430


>gi|331659679|ref|ZP_08360617.1| protein transport protein HofQ [Escherichia coli TA206]
 gi|331052894|gb|EGI24927.1| protein transport protein HofQ [Escherichia coli TA206]
          Length = 412

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 156/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNVARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
           +          + + NI ++      +     + +           T       N+ A S
Sbjct: 106 VEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ ++ +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  +    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|183221062|ref|YP_001839058.1| general secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911156|ref|YP_001962711.1| type II secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167775832|gb|ABZ94133.1| Type II secretory pathway component, protein D [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167779484|gb|ABZ97782.1| General secretory pathway protein D [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 587

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 84/438 (19%), Positives = 147/438 (33%), Gaps = 52/438 (11%)

Query: 38  NISDVEIGKGKKIS--IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
            +SD E+   K I+  + L     +++   ++ V   D     ++  +  T+   G    
Sbjct: 131 PVSDSEVALNKTITQIVPLEFSNAIELEPILKRVTSPDTDI--IIPKNQNTLIFSGSTAD 188

Query: 96  QANVILI--------GHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVS 142
              ++ +           G      DI I     +    L        + D+ +      
Sbjct: 189 INKLLKLVDNLDVRADGPGSISSAGDIHIYTLEYNEAEKLAAILVKLDMPDAPVAPTTQG 248

Query: 143 ---------------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                                  V   QD  +AV   E+               KK++ +
Sbjct: 249 APGEAGADGKPAPPPQPTAQAPKVPGKQDKIKAVAHKESNSLIVTATPQEWEEIKKIIKI 308

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L+     QV L+V I E+    L   G        + G   +  A  GG     G   +V
Sbjct: 309 LD-TPRKQVLLEVLIVELSSTDLNDFGIDWRYQELAYGQFNTGLAAQGGVIDKNGRPTNV 367

Query: 248 KGVLD---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             +                 +L+A         L+ P +  +  Q A    G     +T 
Sbjct: 368 NTLSGFSLGFIRRGGQQIIGILNANSTNENFNVLSAPQILTLDNQEAEINVGQDVPVRTQ 427

Query: 299 SSSTG--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDM 348
           + + G          +      G+ L FTP +    RI L +  E+           G  
Sbjct: 428 NRNAGLGGDNAVTVANFEYRPTGIKLKFTPHINKNNRITLDLYQEIKNVAGISSEATGGN 487

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P++  R   TT+ + +  TIV+ GLL +D Q+  + IP+L +IP+LG LFR +     +T
Sbjct: 488 PTFNKRDIKTTIVVDNIQTIVIGGLLSNDKQKKVQKIPILGEIPLLGTLFRRTTNQNRKT 547

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +  TP ++      D
Sbjct: 548 NLMVFLTPHILDDRDKSD 565


>gi|91200092|emb|CAJ73135.1| similar to general secretion pathway protein D [Candidatus Kuenenia
           stuttgartiensis]
          Length = 668

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 11/281 (3%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I +S + +  +ET             S K ++  ++ A   QV ++V I EV R+   
Sbjct: 374 RDIVESMKVLADTETNSVIMKTFPSDYKSIKAIIEAID-ATPQQVFIEVLIVEVTRNDTL 432

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
             G +   +GS+                +            + SFE ++  L  ++  + 
Sbjct: 433 DYGTEWLWSGSNLQVYGVGDI----ARAAGNAAVQFTNTFAKGSFEILIDILATSSNAKI 488

Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           L+ P +     Q AS   G +        +   ++     V   D G++L  TP +   G
Sbjct: 489 LSAPHILVRDEQPASIQVGEEVPILTSSGQQTGTTITFEQVQYRDTGIILTVTPHIAENG 548

Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L +  EVS   +     +  P++  R+  T++ + SG TI L G+++   ++  + I
Sbjct: 549 LITLEVNQEVSNAKLTDTGVEKSPTFSTRQVQTSLVIKSGHTIGLGGIIEQKNEKEVKKI 608

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  IP LG LF+ +    + TE+ +  TP++       D
Sbjct: 609 PLLGDIPYLGNLFKATSLIDKRTELIMLITPYIANNAEDAD 649


>gi|270264426|ref|ZP_06192692.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
 gi|270041562|gb|EFA14660.1| putative outer membrane porin HofQ [Serratia odorifera 4Rx13]
          Length = 414

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/378 (21%), Positives = 142/378 (37%), Gaps = 36/378 (9%)

Query: 75  TKADVVVHSPRTMYLFGKNVG-QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
             AD    +     +    VG    + L     +Q L + + + +    LE  +     +
Sbjct: 42  ALADYQQLN----VVTATGVGGNLTLRLDNVSWQQALAVILRMGKLSMTLEGNVMMVFPE 97

Query: 134 SNIRVEMVSDTVVLHG-----MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMN 186
            +   E     + L        V    +   AVE++E   +Q     ++  +  + K  N
Sbjct: 98  PD-EQEKQRQQLALAQKQPLESVTLTLNHADAVEIAENLNAQGSILLSERGSVVADKRTN 156

Query: 187 LLNIAGED------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
            L I                      QV L   I  +  + L+++G +  +         
Sbjct: 157 ALLIRDTAPIVALLTKRIAEMDAPLAQVQLAAHIVTINSESLRELGVRWGLAPDEGAAKP 216

Query: 229 SFAADFGGKFV---SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
               DF        S          +     +  L ALE+   +  +A P L     Q+A
Sbjct: 217 LRMGDFNVSLPLERSAVSAGFHLARIGGRLLDLELMALEQENRVEIIASPRLLTAHQQTA 276

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
           S   G +  Y+  S S+GATS+   +  + +  TP +L  GRI L +Q   + P   ++ 
Sbjct: 277 SIKQGTEIPYEVKSGSSGATSMEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISR 336

Query: 345 -AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             G+  +   ++  T V +  G TIVL G+ +    Q  + +P L  IP+LG+LF+ S  
Sbjct: 337 ADGEALAIDKQEIKTQVTVKDGETIVLGGVFQRQSAQGADKVPGLGDIPLLGSLFKQSTK 396

Query: 404 NREETEIFIAATPFLVKP 421
             +  E+ I  TP L+K 
Sbjct: 397 QHKRRELVIFITPTLIKA 414


>gi|15803894|ref|NP_289930.1| outer membrane porin HofQ [Escherichia coli O157:H7 EDL933]
 gi|15833487|ref|NP_312260.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. Sakai]
 gi|168747135|ref|ZP_02772157.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|168753140|ref|ZP_02778147.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|168759412|ref|ZP_02784419.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|168765735|ref|ZP_02790742.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|168772721|ref|ZP_02797728.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|168779471|ref|ZP_02804478.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|168785192|ref|ZP_02810199.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|168797158|ref|ZP_02822165.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208807105|ref|ZP_03249442.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208814350|ref|ZP_03255679.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208821093|ref|ZP_03261413.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209400800|ref|YP_002272825.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|217324393|ref|ZP_03440477.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254795305|ref|YP_003080142.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. TW14359]
 gi|261224673|ref|ZP_05938954.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261254432|ref|ZP_05946965.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291284727|ref|YP_003501545.1| putative fimbrial transporter [Escherichia coli O55:H7 str. CB9615]
 gi|12518014|gb|AAG58491.1|AE005561_4 putative transport portein [Escherichia coli O157:H7 str. EDL933]
 gi|13363707|dbj|BAB37656.1| putative transport portein [Escherichia coli O157:H7 str. Sakai]
 gi|187771720|gb|EDU35564.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4196]
 gi|188018292|gb|EDU56414.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4113]
 gi|189002616|gb|EDU71602.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4076]
 gi|189359008|gb|EDU77427.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4401]
 gi|189364497|gb|EDU82916.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4486]
 gi|189369829|gb|EDU88245.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4501]
 gi|189374266|gb|EDU92682.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC869]
 gi|189380180|gb|EDU98596.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC508]
 gi|208726906|gb|EDZ76507.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4206]
 gi|208735627|gb|EDZ84314.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4045]
 gi|208741216|gb|EDZ88898.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4042]
 gi|209162200|gb|ACI39633.1| protein transporter HofQ [Escherichia coli O157:H7 str. EC4115]
 gi|209756640|gb|ACI76632.1| putative transport protein [Escherichia coli]
 gi|209756642|gb|ACI76633.1| putative transport protein [Escherichia coli]
 gi|209756644|gb|ACI76634.1| putative transport protein [Escherichia coli]
 gi|209756646|gb|ACI76635.1| putative transport protein [Escherichia coli]
 gi|217320614|gb|EEC29038.1| protein transporter HofQ [Escherichia coli O157:H7 str. TW14588]
 gi|254594705|gb|ACT74066.1| predicted fimbrial transporter [Escherichia coli O157:H7 str.
           TW14359]
 gi|290764600|gb|ADD58561.1| predicted fimbrial transporter [Escherichia coli O55:H7 str.
           CB9615]
 gi|320639673|gb|EFX09267.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. G5101]
 gi|320655674|gb|EFX23597.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320661459|gb|EFX28874.1| outer membrane porin HofQ [Escherichia coli O55:H7 str. USDA 5905]
 gi|320666481|gb|EFX33464.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. LSU-61]
          Length = 412

 Score =  188 bits (477), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|317049888|ref|YP_004117536.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
 gi|316951505|gb|ADU70980.1| type IV pilus secretin PilQ [Pantoea sp. At-9b]
          Length = 418

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 68/309 (22%), Positives = 127/309 (41%), Gaps = 30/309 (9%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              L+          ++ V+  +++++L    R +Q++ R                    
Sbjct: 131 ARSLQAERSLMTPRGSVTVDSRTNSLLLRDTPRALQETVR-------------------- 170

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
                +N L++   +QV L   I  +  + L+++G    ++ +                 
Sbjct: 171 ----WLNALDLPL-EQVELSAHIVTISEEHLRELGVNWGLSPAEEVMQTLRNPQLAIPLA 225

Query: 240 SEGGDF---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                F      G +        L ALE+ + I  +A P L     Q+A+   G +  Y+
Sbjct: 226 VSNPAFRMGVTLGHIGGDLLNLELSALEQESQIDIIASPRLFTSHQQTATIKQGTEIPYE 285

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVR 354
             S ++GAT++   +  + +  TP VL  GRI L+++   + P   +N G     S   +
Sbjct: 286 VKSGNSGATAIEFKEAVLGMEVTPVVLGNGRIQLKLRLSQNMPGRSINTGEHQTLSIDKQ 345

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + DT V L  G T+ L G+ +    Q +  +P L K+P++G LFR+     ++ E+ I  
Sbjct: 346 EIDTQVTLRDGETLALGGIFQQQRAQNENRVPWLGKLPVVGNLFRHQTDEHKKKELVIFI 405

Query: 415 TPFLVKPVA 423
           TP LV+  A
Sbjct: 406 TPRLVREAA 414


>gi|297537658|ref|YP_003673427.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257005|gb|ADI28850.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 838

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 76/479 (15%), Positives = 155/479 (32%), Gaps = 81/479 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   +   A + +    + +   I++ L++ +   +      + V D +  D        
Sbjct: 198 PISLQFRDANLKMVFEALSRTSGINVLLDRDVKNDLK---TTIFVKDASVEDTIGLILMQ 254

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 V +  T++++     +          + ++    L+  D   ++  ++  +   
Sbjct: 255 NQLEEKVLNENTVFIYPSTPAKIK-----EYQELVIRTFHLVNADAKQMQTMIKTMLKTK 309

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I +   ++++V+            AV+L+E  ++    N                    
Sbjct: 310 DIFIHEKTNSLVMRDTP-------EAVQLAEKLVAAQDLNDPE----------------- 345

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241
            V L+V + EV    + +IG Q       S                              
Sbjct: 346 -VMLEVEVLEVLHSKMTEIGVQWPTQFGLSVTDAPSTPTTTVGLGGAIQTTTPPPVPLTL 404

Query: 242 -GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G        +       +L   +       LA P +     + A    G +    T S 
Sbjct: 405 EGLRNITGSNIKVTPLSLLLTMKKDVGDTNLLASPRIRVRQHEKAKIMIGDRVPVITNSV 464

Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----MP 349
           +  +T       SV   D G+ L   P +   G + ++   EVS     V          
Sbjct: 465 TPVSTGTPVVTGSVQYLDVGLKLEVEPDIHIDGEVAIKTYLEVSNIANQVTNATSGTIAY 524

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T + L  G T VL GL+ D+ ++    +P L  +PILG LF +   ++ +TE
Sbjct: 525 QIGTRNASTVLRLKDGETQVLGGLISDEDRKSASKVPGLGDLPILGRLFSSHNNSKTKTE 584

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           I +  TP +++ +           +    D   F+      ++    + +  G    G+
Sbjct: 585 IILFITPHIIRNI-----------HQPAADLSEFWSGTDATLHSKPMSLQPVGVAKTGS 632


>gi|302392509|ref|YP_003828329.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
 gi|302204586|gb|ADL13264.1| type II and III secretion system protein [Acetohalobium arabaticum
           DSM 5501]
          Length = 428

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 100/229 (43%), Gaps = 9/229 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++  I +V  D LK +G   S    +     +         +  GG   ++     
Sbjct: 181 KQVIIEARIEDVSYDKLKDLGINWSF---AKNRGDNKGEQISDTDIENGGSGILEIGDVS 237

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310
            ++  ++ AL+      TLA P +  I G+ A    G +              +T+++  
Sbjct: 238 MNYTAIIRALKSTDDSTTLANPRIATIDGKEAVINMGQEVPILKSEKDDDGQTSTNISFR 297

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D G VL  TP  ++  +I + I+ EVSE       G  P    +K +T + + +G TIV+
Sbjct: 298 DVGTVLKITPR-INNNQIRMNIKPEVSEVDHWE--GSYPVINTKKVETNIIVKNGETIVI 354

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GL+ +        +PL   +PI G LF++ R  +E+ E+ I  TP ++
Sbjct: 355 GGLISEKEINQLSKVPLFGDVPIFGELFKSRRTTKEKRELVIFITPRII 403


>gi|114571311|ref|YP_757991.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114341773|gb|ABI67053.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 686

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 66/334 (19%), Positives = 126/334 (37%), Gaps = 20/334 (5%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVVLHGMVRTIQD 156
               ++ L   ++     + L   +    A         I      D    HG      +
Sbjct: 326 SAGSERRLRYYVVRNTPASTLATQITAAFAGGQTGAGQLIEPRFQGDDA--HGEPSAPGE 383

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
            Q  + +    L+ +   +  +   +++   +  +++    QV ++ TIAEVR +     
Sbjct: 384 EQSRLTIIPDELNNALIIRATDQEYREILDLVQRMDV-MPPQVLIEATIAEVRLEDGLDF 442

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G +     + S  + S          +                   L AL   T +  L+
Sbjct: 443 GVRWYFENAGSNETSSLQFSDSNTGSTAPVFPGFNYAFSGTDLTATLSALRSITDVTVLS 502

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPG 326
            P++   + Q+A    G +    T ++++   S       V   + GV+L  TP + + G
Sbjct: 503 APSIMVQNNQTAHLQVGDEVPIVTQTATSVTESNAPIVSSVELRETGVILQVTPRINASG 562

Query: 327 RIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L +  EVS       +  D P+ +  +  +TV + S  TI L GL+++     +   
Sbjct: 563 MVVLEVNQEVSSVRPTTTSGIDSPTIQKLEFTSTVSVRSSNTIALGGLIRETTSDNESRT 622

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  IP +G LFRN     + +E+ I  TP ++
Sbjct: 623 PLLGDIPGVGNLFRNRAMTSQRSELVIFLTPRII 656


>gi|260886221|ref|ZP_05897484.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
 gi|260863940|gb|EEX78440.1| putative secretin and TonB short domain protein [Selenomonas
           sputigena ATCC 35185]
          Length = 462

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +            F+     A  P   E   A +      I +   + + L+  +  ++ 
Sbjct: 18  ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 77

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121
           + ++DV   +P +A +++   + + +  ++ G+  ++    +      + +  +   D+ 
Sbjct: 78  LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 132

Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                ++  + ++ I        +    +          +  ++ +   L   G  +   
Sbjct: 133 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 191

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           + ++ V++ L++   +QV+L+  +  + ++  K++G     +     P  +  +   G  
Sbjct: 192 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 250

Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               G+        R          +   + AL        LA P +T + G+ A    G
Sbjct: 251 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 310

Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           G        ++    + +      G++L +TP +   G I  R+ TEVS PV  V+A   
Sbjct: 311 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 369

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IPILG  F++ R  + ++
Sbjct: 370 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 429

Query: 409 EIFIAATPFLVKPVAMRD 426
           EI I  T  +++  +   
Sbjct: 430 EIMIFLTAHILRDTSPPA 447


>gi|26249985|ref|NP_756025.1| outer membrane porin HofQ [Escherichia coli CFT073]
 gi|227883521|ref|ZP_04001326.1| competence protein E [Escherichia coli 83972]
 gi|26110414|gb|AAN82599.1|AE016768_17 Protein transport protein hofQ precursor [Escherichia coli CFT073]
 gi|227839400|gb|EEJ49866.1| competence protein E [Escherichia coli 83972]
          Length = 412

 Score =  188 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ ++ +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  +    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|218702134|ref|YP_002409763.1| outer membrane porin HofQ [Escherichia coli IAI39]
 gi|331664993|ref|ZP_08365894.1| protein transport protein HofQ [Escherichia coli TA143]
 gi|218372120|emb|CAR19982.1| fimbrial transporter [Escherichia coli IAI39]
 gi|331057503|gb|EGI29489.1| protein transport protein HofQ [Escherichia coli TA143]
          Length = 412

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|293390985|ref|ZP_06635319.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951519|gb|EFE01638.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 469

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 98/244 (40%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I                            +F    
Sbjct: 194 EQIAIEARIVTINDESLKELGVRWGIFNPTENAHRIGGSLAGNGFDNLVNQLNVNFPTTT 253

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y  V
Sbjct: 254 TPAGSVALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILV 313

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKA 356
           +  +G+ SV   +  + L  TP +    +I L +    + P   V  G  ++ S   ++ 
Sbjct: 314 NEKSGSQSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEI 373

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I +  + +P+L  IP +  LF       ++ E+ I  TP
Sbjct: 374 NTQVFAKDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTP 433

Query: 417 FLVK 420
            +++
Sbjct: 434 HILR 437


>gi|119943890|ref|YP_941570.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
 gi|119862494|gb|ABM01971.1| general secretion pathway protein D [Psychromonas ingrahamii 37]
          Length = 662

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 117/287 (40%), Gaps = 16/287 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G   + Q          T            SS   ++  L+I    QV ++  I EV  
Sbjct: 309 AGQSGSAQGGLSIEAHEGTNAIVVSAQPALMSSLTSIIRQLDIR-RAQVLVEAIIVEVSE 367

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFSFET 258
                +  Q   T   +    S          ++  D ++  + +           ++  
Sbjct: 368 GDGINLNVQWGTTNGGTQFQDSAVTTGNIVAGTQDNDAAISAIGNISGGIAGYIGSNWGV 427

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYG 313
           VL AL  AT    LA P+LT +  Q ASF  G +         + ++     ++   + G
Sbjct: 428 VLQALSSATTSNILATPSLTTLDNQEASFIVGDEVPVLTGSTSSATNDNPFQTIERKEIG 487

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L  TP +     + + I+ EVS+     +A D+  +  R   TTV   SG TIV+ GL
Sbjct: 488 IKLKVTPQINEGDSVQMIIEQEVSDIKNDTSAVDV-IFSTRSVKTTVLAKSGETIVIGGL 546

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + + +++  + +PLL  IP+LG LFR+++ + E+  + I     +++
Sbjct: 547 IDETVKETVQKVPLLGDIPLLGFLFRSTQSSTEKRNLMIFLRATIIR 593


>gi|30065325|ref|NP_839496.1| outer membrane porin HofQ [Shigella flexneri 2a str. 2457T]
 gi|56480325|ref|NP_709164.2| outer membrane porin HofQ [Shigella flexneri 2a str. 301]
 gi|30043587|gb|AAP19307.1| putative transport portein [Shigella flexneri 2a str. 2457T]
 gi|56383876|gb|AAN44871.2| putative transport portein [Shigella flexneri 2a str. 301]
 gi|281602739|gb|ADA75723.1| putative transport protein [Shigella flexneri 2002017]
 gi|313647313|gb|EFS11765.1| transport protein hofQ [Shigella flexneri 2a str. 2457T]
 gi|332749511|gb|EGJ79928.1| transport protein hofQ [Shigella flexneri K-671]
          Length = 412

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 153/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS     +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|157146468|ref|YP_001453787.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
 gi|157083673|gb|ABV13351.1| hypothetical protein CKO_02228 [Citrobacter koseri ATCC BAA-895]
          Length = 640

 Score =  188 bits (476), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 114/297 (38%), Gaps = 20/297 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           ++   +      ++   +        N  +S +KV++ L+I    QV ++  IAEV+   
Sbjct: 299 KSPVAATDLNITADESTNSLVITAQPNVMNSLEKVIDKLDIRRP-QVLVEAIIAEVQDGA 357

Query: 210 LKQIGFQHSIT--GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              +G Q +    G   G +           +       +        F  ++ AL    
Sbjct: 358 GTDLGVQWTSKHGGVQFGATGLPIGQVKNGTIKGVNFTGMATGFFNGDFGALMTALSTNG 417

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVL 323
               L+ P++  +  + ASF  G      + S +T       +V     G  L   P + 
Sbjct: 418 KNDILSTPSVVTLDNKEASFNVGQDVPVLSGSQTTTGDNVFNTVERKTVGTKLKILPQIN 477

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
               I ++I+ EVS             P++  R  +  V + SG T+VL GL+++  +Q 
Sbjct: 478 DGDMIHMKIEQEVSSVDASSTEDSSLGPTFNTRTINNEVMVHSGQTVVLGGLIENVTKQN 537

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
              +PLL  IP++G LFR +  +  +  + +     +++          DD+YS   
Sbjct: 538 VSKVPLLGDIPLVGQLFRYTSQDTTKRNLMVFIHTTVLRD---------DDNYSAAS 585


>gi|110643624|ref|YP_671354.1| outer membrane porin HofQ [Escherichia coli 536]
 gi|191171563|ref|ZP_03033111.1| protein transporter HofQ [Escherichia coli F11]
 gi|215488672|ref|YP_002331103.1| outer membrane porin HofQ [Escherichia coli O127:H6 str. E2348/69]
 gi|331649187|ref|ZP_08350273.1| protein transport protein HofQ [Escherichia coli M605]
 gi|110345216|gb|ABG71453.1| protein transport protein HofQ precursor [Escherichia coli 536]
 gi|190908190|gb|EDV67781.1| protein transporter HofQ [Escherichia coli F11]
 gi|215266744|emb|CAS11183.1| predicted fimbrial transporter [Escherichia coli O127:H6 str.
           E2348/69]
 gi|281180422|dbj|BAI56752.1| putative transport protein [Escherichia coli SE15]
 gi|331041685|gb|EGI13829.1| protein transport protein HofQ [Escherichia coli M605]
          Length = 412

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ ++ +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 TLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  +    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|205360346|ref|ZP_02682767.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205350396|gb|EDZ37027.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 389

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEYSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|1170050|sp|P31780|GSPD_AERHY RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|551421|emb|CAA47124.1| ExeD [Aeromonas hydrophila]
          Length = 678

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/275 (19%), Positives = 106/275 (38%), Gaps = 24/275 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +  ++V+  L+I    QV ++  I E+       +G Q + T        +  
Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTNAG 389

Query: 232 ADFGGKFVSEG----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
              G   ++                      +     + ++  ++ AL   T    L+ P
Sbjct: 390 PGIGSVAIAAKDYKDNGTTTGLAKLAENFNGMAAGFYQGNWAMLVTALSTNTKSDILSTP 449

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + ASF  G +   +T + +     T  +++     G  L  TP +     + L
Sbjct: 450 SIVTMDNKEASFNVGQEVPVQTGTQNSTSGDTTFSTIERKTVGTKLVVTPQINEGDSVLL 509

Query: 331 RIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            I+ EVS         D   P++  R     V + SG T+VL GL+ +  ++    +PLL
Sbjct: 510 TIEQEVSSVGKQATGTDGLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEEVSKVPLL 569

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP+LG LFR++  N  +  + +   P +++   
Sbjct: 570 GDIPVLGYLFRSTSNNTSKRNLMVFIRPTILRDAN 604


>gi|296103142|ref|YP_003613288.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295057601|gb|ADF62339.1| general secretion pathway protein D [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 642

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 101/247 (40%), Gaps = 9/247 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
           +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +      +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGSTGLPISQVKNGTI 389

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +        +  +L AL  +     L+ P++  +  + ASF  G      + S
Sbjct: 390 KGASFTGLATGFFNGDYGALLTALSTSGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449

Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
            +        SV     G  L   P +     I L+I+ EVS             P++  
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+VL GL+++  +Q    +PLL  +P++G LFR +  +  +  + + 
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVSKQNVSKVPLLGDLPLVGQLFRYTSEDTSKRNLMVF 569

Query: 414 ATPFLVK 420
               +++
Sbjct: 570 IHTTVLR 576


>gi|157148976|ref|YP_001456295.1| outer membrane porin HofQ [Citrobacter koseri ATCC BAA-895]
 gi|157086181|gb|ABV15859.1| hypothetical protein CKO_04814 [Citrobacter koseri ATCC BAA-895]
          Length = 412

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 83/423 (19%), Positives = 163/423 (38%), Gaps = 25/423 (5%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++  L +  P+   +   K  N  ++      +   + ++    K +++  P    
Sbjct: 1   MKRWIAAALIAVMPA---VQAGKAQNVTLVVDDVPVVQVLQALAAQEKKNLVV-SPDVSG 56

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH----L 123
            + +S            + +    K+ G    +++  +G  +    +  + + A      
Sbjct: 57  SLSLSLTDV-----PWKQAVQTVIKSAG----LVLRQEGNILHVHSVHWQNENAARQEAE 107

Query: 124 EMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
           +  LR  +   +  I ++    + +     + +           T       N  A ++ 
Sbjct: 108 QARLRANLPLEDRSISLQYADASELAKAGEKLLSAKGSMTVDKRTNRLLLRDNNAALAAL 167

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +     +++   +QV L   I  +    L+++G + ++  +    S              
Sbjct: 168 ETWAAQMDLP-VEQVELAAHIVTINEKSLRELGVKWTLADAQLAGSPGQVTSLASDLSVA 226

Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  
Sbjct: 227 AATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVS 286

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKA 356
           S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ 
Sbjct: 287 SGESGATSVEFKEAVLGMEVTPTVLPKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEI 346

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT VE+ SG T+ L G+     +  K+ +PLL  IP LG+LF +     E  E+ +  TP
Sbjct: 347 DTQVEVKSGETLALGGIFSRKNKSAKDSVPLLGDIPWLGSLFSHDGKENERRELVVFITP 406

Query: 417 FLV 419
            LV
Sbjct: 407 RLV 409


>gi|307131917|ref|YP_003883933.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|399825|sp|Q01565|GSPD2_DICD3 RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|581156|emb|CAA46370.1| outD [Erwinia chrysanthemi]
 gi|306529446|gb|ADM99376.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 710

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 115/306 (37%), Gaps = 31/306 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+ + G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTITIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
           +  IAE++      +G Q +   +      +         +                   
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAVIGTDQFRSNGTLTTAYASAL 462

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                V     R ++  +L AL   +    LA P++  +    A+F  G +    T S +
Sbjct: 463 SSFNGVTAGFYRGNWSMLLTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
           T       +V     G+ L   P +     + L+I+ EVS      ++ +     ++  R
Sbjct: 523 TSADNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSTNSSLGVTFNTR 582

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +  V + +G T+V+ GLL     +  + +PLL  IP LG+LFR+      +  + +  
Sbjct: 583 TVNNAVMVTNGETVVVGGLLDKTSVESNDKVPLLGDIPWLGSLFRSKSQEVRKRNLMLFL 642

Query: 415 TPFLVK 420
            P +++
Sbjct: 643 RPTIIR 648


>gi|261867159|ref|YP_003255081.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261412491|gb|ACX81862.1| protein transport protein HofQ [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 469

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 77/418 (18%), Positives = 152/418 (36%), Gaps = 35/418 (8%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P V  L  +  A+   + I D E+     + +       + +    + V         +
Sbjct: 38  APLVPTLQQLALAHNTNL-IIDDELQGTVSLQLE-----NVDLDQLFRSVA----KIKQL 87

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            +     +Y F K  G  N    G   +       + E        T++   A ++  ++
Sbjct: 88  DLWQENGIYYFTK--GDTNTKFAGKMEEPFPLSLPMAEEPAQLTTATIKLHFAKASEVMK 145

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
            ++      G + +   S    +   + L        +  + KK++  L+    +Q+ ++
Sbjct: 146 SLTGG---SGSLLSPNGSITFDD--RSNLLLIQDEPRSVRNIKKLIKELDKPI-EQIAIE 199

Query: 200 VTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKFVSEGGD 244
             I  +  + LK++G +  I                            +F       G  
Sbjct: 200 ARIVTINDESLKELGVRWGIFSPTDNAHRIGGSLAGNGFDNLVNQLNVNFPTTTTPAGSV 259

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                 ++    +  L ALER   +  +A P L   + +SAS   G +  Y  V+  +G+
Sbjct: 260 ALQVAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYILVNEKSGS 319

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362
            SV   +  + L  TP +    +I L +    + P   V    G++ S   ++ +T V  
Sbjct: 320 QSVEFREAVLGLEVTPHISQDKQILLDLIVSQNSPGSRVAYGLGEVVSIDKQEINTQVFA 379

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G TIVL G+  D I +  + +P+L  IP +  LF       ++ E+ I  TP +++
Sbjct: 380 KDGETIVLGGVFSDTITKGTDKVPVLGDIPGIKHLFSKESERHQKRELVIFVTPHILR 437


>gi|331654967|ref|ZP_08355966.1| protein transport protein HofQ [Escherichia coli M718]
 gi|331046982|gb|EGI19060.1| protein transport protein HofQ [Escherichia coli M718]
          Length = 412

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             +V S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTIVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|194431292|ref|ZP_03063585.1| protein transporter HofQ [Shigella dysenteriae 1012]
 gi|194420747|gb|EDX36823.1| protein transporter HofQ [Shigella dysenteriae 1012]
          Length = 412

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+VL G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|330957039|gb|EGH57299.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 692

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 63/343 (18%), Positives = 134/343 (39%), Gaps = 21/343 (6%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------SVKGVLDRFS 255
           D  K++G +     ++SG S        G   +    F             +  + +   
Sbjct: 461 DYDKELGVRWGGATNTSGSSNWSTGTAAGGSTANSSTFVDMGAANATSGIGLGFLTNNTM 520

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+V+  +  + 
Sbjct: 521 LDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEVPYQES-SSSGATTVSFKEASLS 579

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +    RI + ++    EP        +P  +  + +  V +  G TIV+ G+  
Sbjct: 580 LEVTPQITPDNRIIMEVKVTKDEPDYVNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFS 639

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +   +  + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 NTQSKSVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 682


>gi|323966201|gb|EGB61637.1| type IV pilus secretin PilQ [Escherichia coli M863]
          Length = 412

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|28870471|ref|NP_793090.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|28853718|gb|AAO56785.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 763

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV+      +G Q         S T  +   +       G    +    
Sbjct: 489 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 548

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
            S        + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 549 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 608

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
           +++T  +SV     GV+L   P +   G + + IQ +VS+   G  +      P    R 
Sbjct: 609 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 668

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 669 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 728

Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
           P ++   +     +  D Y  
Sbjct: 729 PRVI--TSSSQARQVTDDYRQ 747


>gi|209920843|ref|YP_002294927.1| outer membrane porin HofQ [Escherichia coli SE11]
 gi|218697071|ref|YP_002404738.1| outer membrane porin HofQ [Escherichia coli 55989]
 gi|331670209|ref|ZP_08371048.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331679451|ref|ZP_08380121.1| protein transport protein HofQ [Escherichia coli H591]
 gi|209914102|dbj|BAG79176.1| putative transport protein [Escherichia coli SE11]
 gi|218353803|emb|CAV00141.1| fimbrial transporter [Escherichia coli 55989]
 gi|323944387|gb|EGB40462.1| type IV pilus secretin PilQ [Escherichia coli H120]
 gi|324116416|gb|EGC10335.1| type IV pilus secretin PilQ [Escherichia coli E1167]
 gi|331062271|gb|EGI34191.1| protein transport protein HofQ [Escherichia coli TA271]
 gi|331072623|gb|EGI43948.1| protein transport protein HofQ [Escherichia coli H591]
          Length = 412

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 82/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|94500719|ref|ZP_01307248.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427041|gb|EAT12022.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 640

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 161/454 (35%), Gaps = 49/454 (10%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-DVQDVL 70
           +   L         L  +K ANA ++      + + +KI   L+   + ++ V  +++  
Sbjct: 149 LVPILRPMVAKYGHLAGVKSANALIVTDHASNVRRLEKIIQRLDGSGVSELEVVQLEEAW 208

Query: 71  VSDPTKADVVV-HSPRTMYLFGKN------VGQANVILIGHDGKQMLNLDILIERDIAHL 123
           V D    D++    P  +   GK        G+  V+      + ++  +      +  L
Sbjct: 209 VGD--IVDILTNLDPDKVSEGGKAREASGVAGRIRVVADERANRLIIQGEQSARERVKEL 266

Query: 124 EMTLRRFIADSN----IRVEMVSDTVV------LHGMVRTIQDSQRAVELSETFLSQSGR 173
             TL R    S     IR++      +      L G V+  +   +A             
Sbjct: 267 IATLDRPSKFSGKASVIRLQHADSEELAELLKNLMGDVKDDKGKSQAGGSVSIHADTGLN 326

Query: 174 NQYANSSSK------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                +         +++  L++    QV ++  I EV   +  ++G Q +     +G +
Sbjct: 327 ALVVRAEPSVMSEIKEIVTELDVR-RAQVLIEAAIVEVTGQVDDRVGVQTAALDQETGET 385

Query: 228 KSFAADFGGKFVS----------------EGGDFSVKGVLDRFSFETVLHALERATAIRT 271
              A DF     S                 G      G      F  ++ ALE  +    
Sbjct: 386 PLVATDFANAGTSISQLITGIATGQPAISSGLTLGGVGQNGDTEFAFLVQALESVSNANL 445

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-----GATSVTTHDYGVVLHFTPTVLSPG 326
           L+ P++  +    A    G    + T S+S+       T++   D G  L  TP V    
Sbjct: 446 LSTPSIMTMDNHEAEIIVGQNVPFVTGSTSSTSNSNPFTTIKREDIGTTLKVTPHVQDGK 505

Query: 327 RIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L ++          V          R   T +   +G  ++L GL++D +Q+ +  +
Sbjct: 506 FVRLSVEQSTESVAPTAVEGQADLITNKRSIQTQILAENGEIVMLGGLIRDAVQESESKV 565

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P L  IPI+G LFR++  +R +  + +   P +V
Sbjct: 566 PFLGDIPIIGWLFRSTSESRVKQNLIVFLKPTVV 599


>gi|200387767|ref|ZP_03214379.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604865|gb|EDZ03410.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 389

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|251793894|ref|YP_003008626.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
 gi|247535293|gb|ACS98539.1| protein transport protein HofQ [Aggregatibacter aphrophilus NJ8700]
          Length = 474

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 70/414 (16%), Positives = 152/414 (36%), Gaps = 38/414 (9%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVII---------LQVPVDVQDVLVSDPTKADVVVHS 83
             A +  +  ++   + +++ ++  +          + +    + V         + +  
Sbjct: 40  KQAPLVPTLQQLALAQNVNLIIDDELQGTVSLQLENVDLDQLFRSVA----KIKQLDLWQ 95

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
              +Y   K     +        +  +   ++ E        T++   A ++  ++ ++ 
Sbjct: 96  ENGIYYLSKL--DTSAKFATKMDEPFILPAVMTEEPTRLTTATIKLHFAKASEVMKSLTG 153

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
                G + +   S    + S   L Q      AN   KK++  L+    +Q+ ++  I 
Sbjct: 154 G---SGSLLSPNGSLTFDDRSNLLLIQDEPKSIANL--KKLIKELDKPI-EQIAIEARIV 207

Query: 204 EVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVK 248
            +  + LK++G +  +                      +     +F       G      
Sbjct: 208 TMNGESLKELGVRWGMFNPTENAHRIGGSLAGNGFDNITNQLNVNFPTATTPAGSVALQV 267

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             ++    +  L ALER   +  +A P L   + ++AS   G +  Y  V+  +G+ SV 
Sbjct: 268 AKINGRLLDLELTALERENNVEIIASPRLLTTNKKAASIKQGTELPYILVNEKSGSQSVE 327

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGG 366
             +  + L  TP +    +I L +    + P   V    G++ S   ++ +T V    G 
Sbjct: 328 FREAVLGLEVTPHISQDKQILLDLVVSQNAPGSRVAHGLGEVVSIDKQEINTQVFAKDGE 387

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           TIVL G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP +++
Sbjct: 388 TIVLGGVFHDTITKNVDKVPLLGDIPGVKHLFSKESERHQKRELVIFVTPHILR 441


>gi|170681657|ref|YP_001745634.1| outer membrane porin HofQ [Escherichia coli SMS-3-5]
 gi|170519375|gb|ACB17553.1| protein transporter HofQ [Escherichia coli SMS-3-5]
          Length = 412

 Score =  187 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|308188407|ref|YP_003932538.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
 gi|308058917|gb|ADO11089.1| Type IV pilus biogenesis and competence protein pilQ precursor
           [Pantoea vagans C9-1]
          Length = 423

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 123/323 (38%), Gaps = 31/323 (9%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             +L      E   + L           ++ V+  ++ ++L                   
Sbjct: 122 AVILRYASASEVHASLLTERQSLMTPRGSVTVDKRTNALLLRDTA--------------- 166

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                     A   +++ +  L++   +Q+ L   I  +  + L+++G +  +    +  
Sbjct: 167 ---------AALKETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAV 216

Query: 227 SKSF----AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           +                           +     +  L ALE+   I  +A P L     
Sbjct: 217 TDILHHPRLDIPLALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQ 276

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           Q+AS   G +  Y+  + ++GATS+   +  + +  TPT+   GRI L+I    + P   
Sbjct: 277 QTASIKQGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPTISGNGRIQLKIHISQNMPGRS 336

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           I     D+ S   ++ +T V +  G T+ L G+ +      +  +PLL  +P++G LFR 
Sbjct: 337 IRTGDSDILSIDKQEIETQVTVSDGQTLALGGIFQQQRSHGENKVPLLGNVPLIGGLFRQ 396

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
               R++ E+ I  TP LV+  A
Sbjct: 397 QSEQRKKRELVIFITPRLVREAA 419


>gi|238754545|ref|ZP_04615899.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238707176|gb|EEP99539.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 674

 Score =  187 bits (474), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 54/254 (21%), Positives = 99/254 (38%), Gaps = 13/254 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----KSFAADFGG 236
           +KV+  L+I    QV ++  I E +      +G Q        G        +      G
Sbjct: 359 EKVIEKLDIR-RAQVLVEAIIVEAQDGEGINLGIQWDTKQKKVGGFISYNKSNLGNIQNG 417

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                 G   +     R ++  +  AL   ++   LA P++  +    A F+ G +    
Sbjct: 418 VTSIANGISGLTTGFYRGNWSGLFTALATNSSNEILATPSIVTLDNMDAEFSVGQEVPVL 477

Query: 297 TVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MP 349
           +   +T       +++    G++L   P +     + L I+ EVS      N        
Sbjct: 478 SSQQTTSTDKVYNTISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVAENSNVDKDNIGS 537

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++  R  +  V + SG T+V+ GLL   +  +   IPLL  IPI+G LFR  +   E+  
Sbjct: 538 TFNKRVVNNAVLVKSGETVVVGGLLDKKVSNVINKIPLLGDIPIIGNLFRQKKEKIEKRN 597

Query: 410 IFIAATPFLVKPVA 423
           + +   P +++   
Sbjct: 598 LILFIKPTIIRESD 611


>gi|204928849|ref|ZP_03220048.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204322282|gb|EDZ07480.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 389

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 77/376 (20%), Positives = 147/376 (39%), Gaps = 17/376 (4%)

Query: 53  GLNKVIILQVPVDVQDVLVSDPTK----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
             ++  ++  P     + +         A   V +   + L  +  G   + +      Q
Sbjct: 19  EQDRQNLVVSPDVSGTLSLHLTDVPWKQALQTVVNSAGLVL--RQEGNI-LHV----HSQ 71

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
               +    +D   L +     + + +I ++      +     + +      +    T  
Sbjct: 72  AWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKRTNR 131

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++   S 
Sbjct: 132 LLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGSV 190

Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                             V    G ++    +  L ALE+   +  +A P L A   Q A
Sbjct: 191 GDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPA 250

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGV 343
           S   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   ++  
Sbjct: 251 SIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQILQQ 310

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+   
Sbjct: 311 ADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGK 370

Query: 404 NREETEIFIAATPFLV 419
             E  E+ +  TP LV
Sbjct: 371 EDERRELVVFITPRLV 386


>gi|56476309|ref|YP_157898.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312352|emb|CAI06997.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 769

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 70/352 (19%), Positives = 129/352 (36%), Gaps = 17/352 (4%)

Query: 86  TMYLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
            +Y++    G A      +  +   G+               L    R  +  S +  + 
Sbjct: 366 QLYVYPVQNGSAQHLGSLLSAVFGGGQAGAARTPTDSGVAPGLSSIGRTGLGGSGMMSQA 425

Query: 141 VSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
           +++     G      T       V +     + +       S  +K+   L        Q
Sbjct: 426 LNNAGRNDGSQTQATTQFSLGPLVRVVADEFNNALLIYAPGSEYRKIEAALRRLDLSPTQ 485

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKGVLD 252
           V ++ +I EV      + G Q    G   G    S  F              FS      
Sbjct: 486 VLIEASILEVTLSDETRFGLQWFFEGKLGGDYRGSGLFTDRASETLGRTVPGFSYSITNA 545

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVT 308
                 VL+A+ + + +  ++ P++  +   +A    G Q             T +TS+ 
Sbjct: 546 AGQVRAVLNAMAQKSLVNVISSPSVMVLDNHTAVIHVGDQQPIRSTQTVTDGGTTSTSIQ 605

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D GV+L  TP+  + G + + I+  V++     +A    S+  R+  + V + +G T+
Sbjct: 606 YKDTGVMLQVTPSANAGGMVAMDIKQSVTDVGAVDDATGQRSFNQREVASKVAVRTGETV 665

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L GL++D     K G+P L  IP+LG LF  +      TE+ +  TP +V+
Sbjct: 666 ILGGLIRDSDTNGKTGVPWLHDIPVLGPLFGTTSDVTRRTELLVMITPRVVQ 717


>gi|225024352|ref|ZP_03713544.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
 gi|224942849|gb|EEG24058.1| hypothetical protein EIKCOROL_01227 [Eikenella corrodens ATCC
           23834]
          Length = 707

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 105/251 (41%), Gaps = 16/251 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------------GSSSGPS 227
           ++++  L++    QV ++  I E      + +G +                  G ++G +
Sbjct: 449 ERLIEQLDVPAR-QVMIEARIVEANDGFSRALGVKFGYNKTSGSTRIGSGLGSGGANGNT 507

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S A +     +S     ++   L   +    L A++     + ++ P +     + A+ 
Sbjct: 508 FSIAPNVNLPAISATSSITIVRALSSGALGLELTAMQEQNRGKIISSPRVLTQDRKEATI 567

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            +G +  Y+  SSS   ++ +  +  + L  TP +   G + + I+          +   
Sbjct: 568 KAGREIPYQEASSSGATST-SFKEAVLGLTVTPQITPDGNVIMDIKLNKDSVDENCSVLG 626

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    ++  T   +  GGTI+L G+ +++    +  +PLL  IP++G LFR +R N  +
Sbjct: 627 TPCINTKELVTRAMVEDGGTIILGGIYEEENSNSQYKVPLLGDIPVVGNLFRGTRRNNSK 686

Query: 408 TEIFIAATPFL 418
            E+ I  TP +
Sbjct: 687 NELLIFITPRI 697


>gi|321226537|gb|EFX51587.1| Type IV pilus biogenesis protein PilQ [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 389

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 130/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L       + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRFQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQLLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|91212863|ref|YP_542849.1| outer membrane porin HofQ [Escherichia coli UTI89]
 gi|117625659|ref|YP_858982.1| outer membrane porin HofQ [Escherichia coli APEC O1]
 gi|218560448|ref|YP_002393361.1| outer membrane porin HofQ [Escherichia coli S88]
 gi|237703118|ref|ZP_04533599.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|91074437|gb|ABE09318.1| protein transport protein HofQ precursor [Escherichia coli UTI89]
 gi|115514783|gb|ABJ02858.1| putative transport protein HofQ precursor [Escherichia coli APEC
           O1]
 gi|218367217|emb|CAR04991.1| fimbrial transporter [Escherichia coli S88]
 gi|226902382|gb|EEH88641.1| protein transporter HofQ [Escherichia sp. 3_2_53FAA]
 gi|294490021|gb|ADE88777.1| protein transporter HofQ [Escherichia coli IHE3034]
 gi|312947939|gb|ADR28766.1| outer membrane porin HofQ [Escherichia coli O83:H1 str. NRG 857C]
 gi|323950048|gb|EGB45931.1| type IV pilus secretin PilQ [Escherichia coli H252]
 gi|323954672|gb|EGB50454.1| type IV pilus secretin PilQ [Escherichia coli H263]
          Length = 412

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 157/413 (38%), Gaps = 21/413 (5%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
           +   +  +P ++ A    + +   ++   + + +     K+ ++  P     V +     
Sbjct: 6   AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65

Query: 77  -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
                   VV S     L  +  G   + +           D +  ++           +
Sbjct: 66  PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            + NI ++      +     + +           T       N+ A S+ ++ ++ +++ 
Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
              QV L   I  +    L+++G + ++  +            G           +    
Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV 
Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             +  + +  TPTVL  GRI L++     V   V+    G++ +   ++ +T VE+ SG 
Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 409


>gi|213970091|ref|ZP_03398223.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301381448|ref|ZP_07229866.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato Max13]
 gi|302061436|ref|ZP_07252977.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato K40]
 gi|302133002|ref|ZP_07258992.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213925195|gb|EEB58758.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 775

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV+      +G Q         S T  +   +       G    +    
Sbjct: 501 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 560

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
            S        + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 561 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
           +++T  +SV     GV+L   P +   G + + IQ +VS+   G  +      P    R 
Sbjct: 621 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 740

Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
           P ++   +     +  D Y  
Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759


>gi|145632680|ref|ZP_01788414.1| competence protein E [Haemophilus influenzae 3655]
 gi|144986875|gb|EDJ93427.1| competence protein E [Haemophilus influenzae 3655]
          Length = 401

 Score =  186 bits (473), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 142 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLAGNSFENIADNLNVNFATTT 201

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 202 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 261

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 262 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 321

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 322 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 381

Query: 417 FLVKP 421
            ++K 
Sbjct: 382 HILKA 386


>gi|323974808|gb|EGB69920.1| type IV pilus secretin PilQ [Escherichia coli TW10509]
          Length = 412

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 162/426 (38%), Gaps = 31/426 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    PSV    P       +   +      + + +K+++ ++  +   V +
Sbjct: 1   MKQWIAALLLMLIPSVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120
            + DV               + +    K+ G    ++   +G  +    +  + D     
Sbjct: 61  HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSVAWQNDNIARQ 104

Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
              +  ++  +   N  I ++      +     + +           T       N+ A 
Sbjct: 105 EAEQARVQASLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKAAL 164

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ ++ +  +++    QV L   I  +    L+++G + ++  +            G   
Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDL 223

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   
Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ + 
Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403

Query: 414 ATPFLV 419
            TP LV
Sbjct: 404 ITPRLV 409


>gi|239995641|ref|ZP_04716165.1| general secretion pathway protein D [Alteromonas macleodii ATCC
           27126]
          Length = 683

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 121/330 (36%), Gaps = 47/330 (14%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            ++I+ E               + S  A E S   +           S ++V+  L+I  
Sbjct: 290 SASIQAEEQGGGTTSRRAGSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240
             QV ++  I EV       +G Q +          +     G   V+            
Sbjct: 347 RAQVQVEAIIVEVFEGDGTTLGVQWASEAGGGTQFSNGVVPVGSLAVALKQAEDDTDTEA 406

Query: 241 -------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                                     GG   +   +    +  V+ A+   T    LA P
Sbjct: 407 YVTDDGEVVTVNTTDEGDYTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466

Query: 276 TLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LT +  + A F  G +    T      ++S    +V   + G+ L  TP +     + L
Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGANNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D+Q+ +  +PLL  
Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESESKVPLLGD 584

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IPILG LF+++  ++ +  + +   P +V+
Sbjct: 585 IPILGHLFKSTSTSKRKRNLMVFLKPTIVR 614


>gi|89074487|ref|ZP_01160964.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
 gi|89049775|gb|EAR55325.1| putative type II secretory pathway, component EpsD [Photobacterium
           sp. SKA34]
          Length = 672

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/465 (16%), Positives = 162/465 (34%), Gaps = 84/465 (18%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQ----DVLVSDPTKADV 79
              AN  +I      + +   I   +++       ++ +          ++ +    AD 
Sbjct: 158 YDPANIIMITGRAAVVNRLADIIERVDRAGNKDVTVVSLNNASAPEMVRIVEALNKSADA 217

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN---- 135
                   +L  K V              +++ D  +   +  L   L + +A S     
Sbjct: 218 KSTPG---FLIPKAV------ADERTNSVLISGDPKVRERLKALIHKLDKEMAASGNSRV 268

Query: 136 --IRVEMVSDTV-VLHGMVRTIQDS-------------QRAVELSETFLSQS--GRNQYA 177
             ++    +D V VL G+   IQ +                +  +    +          
Sbjct: 269 IYLKYAKAADMVDVLKGVSENIQAANKSNTPQVSQSSKDEVMISAHDATNSLIISAPSDV 328

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
            +  + +++ L+I    QV ++  I EV+       G Q            +  A  GG 
Sbjct: 329 MNKLESIISQLDIR-RAQVHIEAMIVEVQEGDGVNFGVQFGSQDGGVIQFGNSGAPIGGL 387

Query: 238 FVSE-------------------------------------GGDFSVKGVLDRFSFETVL 260
             ++                                     GG       +    +  ++
Sbjct: 388 LSAQEAAKDRTKTETRYDADGKPYSYETTESGDLAPMAAFLGGIKGAAAAITMGDWTALV 447

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVV 315
            A+++   +  L+ P +T +  Q A+ + G +    T S +        T+V   D G+ 
Sbjct: 448 TAIKQNRNVNVLSTPNVTVLDNQEANLSVGQEVPVTTGSQTGSNNDNPFTTVERKDVGIQ 507

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +     + ++I+  VS+      A D+  +  R+  T+V +  G  I L GL++
Sbjct: 508 LKVTPQINEGDSVQMKIEQVVSQVADANGAVDI-RFDKRELTTSVLVKDGNMIALGGLMQ 566

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +   + ++ +P+L  IP+LGALFR++    E+T + +   P +++
Sbjct: 567 EKTLESEQKVPILGDIPVLGALFRSTNNQTEKTNLMVFIRPTILR 611


>gi|304397810|ref|ZP_07379686.1| type IV pilus secretin PilQ [Pantoea sp. aB]
 gi|304354521|gb|EFM18892.1| type IV pilus secretin PilQ [Pantoea sp. aB]
          Length = 423

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/431 (16%), Positives = 152/431 (35%), Gaps = 27/431 (6%)

Query: 7   TFFTMMSIFLFSSNPSVAK--LPPIKEANAAVINISDVEIGKGKKISI----GLNKVIIL 60
            +   + + +    P  A    P     + A +      +   ++ ++     +   + L
Sbjct: 2   VWIATLLLVISCLLPVYAADEEPLSLTFDNAPVERILQALADYQQFNLMIAPEVEGSLSL 61

Query: 61  QVPV-DVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           ++        L      A + +      + ++ ++             +Q    +   + 
Sbjct: 62  RLDNLPWHQALDLVARMAKLTLIEQDNVLLVYPES--------WQQAQQQARAAEQQAQL 113

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               L+         S   V       +L      +           T          A 
Sbjct: 114 QQVPLQQRAVTLRYASASEVHAS----LLSERQSLMTARGSVTVDKRTNALLLRDTAAAL 169

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADF 234
             +++ +  L++   +Q+ L   I  +  + L+++G +  +    +  +           
Sbjct: 170 KETERWIRALDLPL-EQIELSAHIVTISEEHLQELGVKWGLQAGDAAVTDILHHPRLDIP 228

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                           +     +  L ALE+   I  +A P L     Q+AS   G +  
Sbjct: 229 LALSSPGISVGMALARIGGQLLDLELSALEQENQIEIIASPRLFTSHQQTASIKQGTEIP 288

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352
           Y+  + ++GATS+   +  + +  TPT+   GRI L+I+   + P   I     ++ S  
Sbjct: 289 YEVSAGNSGATSIEFKEAVLGMEVTPTLSGNGRIQLKIRISQNMPGRSIRTGDSNILSID 348

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++ +T V +  G T+ L G+ +    + +  +PLL  +P++G LFR     R++ E+ I
Sbjct: 349 KQEIETQVTVSDGQTLALGGIFQQQRSRGENKVPLLGNVPLIGGLFRQQSEQRKKRELVI 408

Query: 413 AATPFLVKPVA 423
             TP LV+  A
Sbjct: 409 FITPRLVREAA 419


>gi|289824820|ref|ZP_06544263.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 389

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|330720479|gb|EGG98780.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC2047]
          Length = 332

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 63/239 (26%), Positives = 102/239 (42%), Gaps = 13/239 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGG 243
            QV ++  I   R    KQ+G +   T    G S           +              
Sbjct: 93  RQVQVEARIVIARDTFDKQLGIRWGFTAQGGGSSDRTLTTGGGGLAGDVAVDLGVSGATS 152

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              +  V    + +  L ALE       +++P L    GQ+A   SG +  Y+   SS+G
Sbjct: 153 ALQLGFVHGNDTLDLTLSALESDGVSEVVSQPKLITADGQTARIESGVEIPYQEA-SSSG 211

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
           ATSV+  D  + L  TP +    RI + ++  V++  +G     +PS   R+  T V + 
Sbjct: 212 ATSVSFKDAVLALEVTPQITPDDRIIMDLK--VNKDSVGEIFLGIPSVDTREIQTQVLVE 269

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G T+VL G+ + +  +     P L  IP+LG LF+      ++TE+ I  TP L+K  
Sbjct: 270 NGETVVLGGVYERETIENISKTPFLGDIPVLGELFKRKTKEDDKTELLIFITPKLIKDT 328


>gi|188492932|ref|ZP_03000202.1| protein transporter HofQ [Escherichia coli 53638]
 gi|188488131|gb|EDU63234.1| protein transporter HofQ [Escherichia coli 53638]
          Length = 412

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 31/426 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ ++  +   V +
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVVSPDVSGTVSL 60

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI---- 120
            + DV               + +    K+ G    ++   +G  +    I  + +     
Sbjct: 61  HLTDV------------PWKQALQTVVKSAG----LITRQEGNILSVHSIAWQNNNIARQ 104

Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
              +   +  +   N  I ++      +     + +           T       N+ A 
Sbjct: 105 EAEQARAQANLPQENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTAL 164

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           S+ ++ +  +++    QV L   I  +    L+++G + ++  +            G   
Sbjct: 165 SALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDL 223

Query: 239 VSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                   V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y
Sbjct: 224 SVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPY 283

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRV 353
           +  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   
Sbjct: 284 QVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDK 343

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ + 
Sbjct: 344 QEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVF 403

Query: 414 ATPFLV 419
            TP LV
Sbjct: 404 ITPRLV 409


>gi|311280237|ref|YP_003942468.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
 gi|308749432|gb|ADO49184.1| general secretion pathway protein D [Enterobacter cloacae SCF1]
          Length = 647

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 54/247 (21%), Positives = 100/247 (40%), Gaps = 9/247 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
           +KV++ L+I    QV ++  IAEV+      +G Q +    G+    +            
Sbjct: 331 EKVIDKLDIR-RAQVLVEAIIAEVQDGSGLDVGVQWTSQHGGTQFTSTGLPIGQVKNGKN 389

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G   +        F  ++ AL        L+ P++  +  + ASF  G      + S
Sbjct: 390 TGIGFNGLATGFFNGDFGALMTALSTDGKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449

Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
            +        +V     G  L   P +     I L+I+ EVS             P++  
Sbjct: 450 QTTSGDNVFNTVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDSNATEDASLGPTFNT 509

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+VL GL++ + +Q    +PLL  IP++G LFR +  +  +  + + 
Sbjct: 510 RTINNEVMVHSGQTVVLGGLIESNTKQSVSKVPLLGDIPLVGQLFRYTSQDTSKRNLMVF 569

Query: 414 ATPFLVK 420
               +++
Sbjct: 570 IHTTVLR 576


>gi|45657443|ref|YP_001529.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|294828092|ref|NP_712556.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600682|gb|AAS70166.1| general secretory pathway protein D [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|293385940|gb|AAN49574.2| type II secretory pathway component protein D [Leptospira
           interrogans serovar Lai str. 56601]
          Length = 596

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 59/253 (23%), Positives = 96/253 (37%), Gaps = 18/253 (7%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV L+V I E+    L   G      G + G   S  +       S G        L
Sbjct: 312 ARKQVLLEVLIVELTSSDLNDFGIDWRYKGEAFGQFNSGLSKEANIINSNGQVNPNINTL 371

Query: 252 DRFSFETV----------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             FS   +          L A +       L+ P +  +  Q A  + G     +T S +
Sbjct: 372 SGFSLGFLKAGSEQIIGILSANQGNENFNVLSAPQVLTVDNQEAEISVGQDVPVRTQSRN 431

Query: 302 TGA--------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            G          +      G+ L FTP V    +I L +  E+        AG  P++  
Sbjct: 432 AGTGGTNAVTVDNYEYRPTGIKLKFTPHVNKNNKITLELFQEIKNIAEIALAGGNPTFNR 491

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R+  T++ + +  +IV+ GL+ +D Q+    IP L  IP LG LF+ +    ++T + + 
Sbjct: 492 REIKTSISIENTQSIVIGGLISNDKQKRIIKIPFLGDIPYLGHLFKRTTEKIKKTNLMVF 551

Query: 414 ATPFLVKPVAMRD 426
            TP ++      D
Sbjct: 552 ITPHILDSRETAD 564


>gi|195873801|ref|ZP_02699139.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197248588|ref|YP_002148409.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|195632392|gb|EDX50876.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197212291|gb|ACH49688.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 389

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAGELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|322614138|gb|EFY11074.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322618029|gb|EFY14922.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625356|gb|EFY22182.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322632290|gb|EFY29041.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322636359|gb|EFY33066.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322643215|gb|EFY39784.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644783|gb|EFY41319.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651192|gb|EFY47576.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322654940|gb|EFY51255.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322663102|gb|EFY59306.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322668588|gb|EFY64741.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322674608|gb|EFY70701.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678186|gb|EFY74247.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322682557|gb|EFY78578.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322684270|gb|EFY80276.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323192175|gb|EFZ77407.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323196399|gb|EFZ81551.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201800|gb|EFZ86863.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206342|gb|EFZ91303.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323211936|gb|EFZ96763.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216841|gb|EGA01564.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222240|gb|EGA06623.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323228183|gb|EGA12314.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233550|gb|EGA17643.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323236988|gb|EGA21055.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323243797|gb|EGA27813.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323255748|gb|EGA39498.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323267633|gb|EGA51115.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323268514|gb|EGA51981.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 389

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 72/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|332289551|ref|YP_004420403.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
 gi|330432447|gb|AEC17506.1| putative outer membrane porin HofQ [Gallibacterium anatis UMN179]
          Length = 380

 Score =  186 bits (472), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 118/306 (38%), Gaps = 28/306 (9%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           +   ++   +   +L G+     +    + L +        ++      K++++ L+  G
Sbjct: 61  NELYKIFNENGNGLLSGLSGFSVEPSNNLLLVK-------GDKQQIQKFKQLISQLDKPG 113

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGK 237
           + Q+ ++  I  +  + L ++G +  +                      S     +F   
Sbjct: 114 K-QIAIEARIVTINNESLNELGVRWGMFSDADNFHKVAAKFDSFGLENLSSHLNVNFSTS 172

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +      V  +  R   +  L ALE+   +  +A P L   + + AS   G +  Y  
Sbjct: 173 SEAASIALQVAKIHGRL-LDLELKALEQENNVEIIASPHLLTSNQRKASIKQGSEIPYVI 231

Query: 298 VSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRV 353
              +  +  T +   +  + L  TP VL  G I L +    +     +   AG + +   
Sbjct: 232 EDDTERSSRTHIEFKEAVLGLEVTPQVLHQGVISLDLVVTQNSAGASIPYGAGQVVTIDK 291

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++  + V +  G T+VL G+  D I + +  +PLL  IP LG LF +     ++ E+ I 
Sbjct: 292 QEVQSQVLVRDGETVVLGGIFHDLIGKGENKVPLLGDIPGLGKLFSSKSERHQKRELVIF 351

Query: 414 ATPFLV 419
            TP ++
Sbjct: 352 ITPRII 357


>gi|121999148|ref|YP_001003935.1| general secretion pathway protein D [Halorhodospira halophila SL1]
 gi|121590553|gb|ABM63133.1| general secretion pathway protein D [Halorhodospira halophila SL1]
          Length = 670

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 79/449 (17%), Positives = 150/449 (33%), Gaps = 40/449 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L       A+L    E N  +++ +   IG+ K++   +++       V   +   +  
Sbjct: 165 LLRPLISDEAELAAYSETNTLIVSETAGNIGRLKRLIDRVDQDTTGVTEVVPLEHGSASE 224

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
               V    P       +   +  +         ++  D      +  L   L   + D 
Sbjct: 225 IVEMVEAIEPEK-----RAGRRLLLAADDRSNSVLVGGDPARRPSVMELIQRLDAELEDE 279

Query: 135 NIRV-----EMVSDTVV--LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
                       ++++V  L GM   +               ++      N         
Sbjct: 280 EGAAVIYLRYSDAESIVPILEGMAEGMARGPEGETGVSIHDHEATNALIINGPPDLVAKL 339

Query: 183 -KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-- 239
             V+N L++    QV ++  IAEV  +  +++G Q    G       +F A  GG     
Sbjct: 340 RGVVNRLDVR-RAQVLVEAIIAEVSAERSQELGIQWGALGDQGVGLVNFDAAGGGSVTNI 398

Query: 240 --------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                         S G   +            +L AL   +    L+ P++  +  + A
Sbjct: 399 GRAAAGGTDALGNLSLGSGLTAGAATRGGELGVLLRALSSESDSNILSTPSVMTMDNEEA 458

Query: 286 SFTSGGQHLYKTVS---SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
               G    + T      +    S+   D GV L   P +     + L I+ EVS+    
Sbjct: 459 EIVVGQNVPFVTGREVGDTRDFQSIQREDVGVQLRIRPQINEGDSLKLDIEKEVSDVQER 518

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             A D+    +R   T+  +  G  +VL GL+ +  +   + +P L  IP LG LFR   
Sbjct: 519 GEAEDI-VTSMRSITTSAMVDDGEIMVLGGLMDEQAESQTDRVPGLGSIPGLGWLFRYES 577

Query: 403 FNREETEIFIAATPFLVKPV-AMRDLSRP 430
              ++  + +   P +++     R+L+ P
Sbjct: 578 SAAQKQNLMVFLRPRIIENRDDARELTSP 606


>gi|331006529|ref|ZP_08329826.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
 gi|330419665|gb|EGG94034.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC1989]
          Length = 678

 Score =  186 bits (471), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 96/241 (39%), Gaps = 6/241 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKF 238
           K ++N +++    QV ++  I       +++ GF    + +S+  + +           F
Sbjct: 434 KSLINKVDVPVR-QVMIEARIVSATDTFMEEFGFFVGASDTSTANNPNLTTSALSDATVF 492

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G    V  V +  S    + ALE +     +++P +     Q+A  +SG Q  + + 
Sbjct: 493 NPVGSVLDVSYVSNGVSLALEIQALEDSGYGEVVSQPRVLTGDKQTAKISSGQQIPFTSS 552

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
              T  T     D  + L  TP +    RI + ++                   V +  T
Sbjct: 553 DGDTVTTI--FQDAVLSLEVTPQITPDNRIIMELKVNRDSLDTSTVTVSGSPINVTELTT 610

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T  +  G TIVL G+ +         +P+L  IP+LG LF ++    + TE+ I  TP +
Sbjct: 611 TALVGDGDTIVLGGIYEQTKTSSVSKVPVLGDIPVLGRLFTSNTDQDDRTELLIFITPRI 670

Query: 419 V 419
           +
Sbjct: 671 L 671


>gi|330972847|gb|EGH72913.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aceris str. M302273PT]
          Length = 775

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV+  
Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G              S+ T  +SV     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNSSTDTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS       G +A   P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTDTTGNDANGNPRISTRSVATQVAAQSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKNRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|90581085|ref|ZP_01236885.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
 gi|90437781|gb|EAS62972.1| putative type II secretory pathway, component EpsD [Vibrio angustum
           S14]
          Length = 674

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 120/314 (38%), Gaps = 48/314 (15%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +       +  +    +    +  +N  +  + +++ L+I    QV ++  I EV+    
Sbjct: 302 SQSSKDEVMISAHDATNSLIISAPSNVMNKLESIISQLDIR-RAQVHIEAMIVEVQEGDG 360

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------------- 241
              G Q      S     +  A  GG   ++                             
Sbjct: 361 VDFGVQWGSQDGSVIQFGNSGAPIGGLLSAQEAAKDKTTTQKRYDPDTGAELPPIVTTES 420

Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                     GG       +    +  ++ A++    +  L+ P +T +  Q A+ + G 
Sbjct: 421 GDLAPMAAFLGGVKGAAAAIALGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSVGQ 480

Query: 292 QHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +    T S +        T+V   D G+ L  TP +     + ++I+  VS+      A 
Sbjct: 481 EVPVTTGSQTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANGAV 540

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+  +  R+  T+V +  G  I L GL+++   + ++ +P+L  IP+LGALFR++    E
Sbjct: 541 DI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNNQTE 599

Query: 407 ETEIFIAATPFLVK 420
           +T + +   P +++
Sbjct: 600 KTNLMVFIRPTILR 613


>gi|148874|gb|AAA24947.1| ORF 1 [Haemophilus influenzae]
          Length = 371

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 17/245 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  I   +                  + +   +F    
Sbjct: 112 EQIAIEARIVTITDESLKELGVRWGIFNPTENARRVAGSLTGNSFENIADNLNVNFATTT 171

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 172 TPAGSIALQVAKINGRLLDLELSALERENNVEIIASPRLLTTNKKSASIKQGTEIPYIVS 231

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           ++     SV   +  + L  TP +     I L +    + P   V     ++ S   ++ 
Sbjct: 232 NTRNDTQSVEFREAVLGLEVTPHISKDNNILLDLLVSQNSPGSRVAYGQNEVVSIDKQEI 291

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+ I  TP
Sbjct: 292 NTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKRELVIFVTP 351

Query: 417 FLVKP 421
            ++K 
Sbjct: 352 HILKA 356


>gi|152978367|ref|YP_001343996.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
 gi|150840090|gb|ABR74061.1| type IV pilus secretin PilQ [Actinobacillus succinogenes 130Z]
          Length = 482

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 18/245 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  +   ++G                S +   +F    
Sbjct: 195 EQIAIEARIVTMNDESLKELGVRWGMFEPTAGAHKVSGSLAANGFTDISNNLNVNFATAT 254

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           +  G        ++    +  L ALE+   +  +A P L   + ++AS   G +  Y   
Sbjct: 255 MPAGSVALQVAKINGRLLDLELTALEQEKNVEIIASPRLLTTNKKAASIKQGTEIPYVVT 314

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRK 355
           +      SV   +  + L  TP +     I + +    + P   V+     ++ S   ++
Sbjct: 315 NGKNDTQSVEFREAVLGLEVTPHISQNNAILMDLTVSQNSPGNRVSYGENSEVVSIDKQE 374

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V    G TIVL G+  D + +    +P+L  IP++  LF N    R++ E+ I  T
Sbjct: 375 IKTQVFAKDGETIVLGGVFHDTVTKGSNKVPVLGDIPVIKHLFGNHSERRQKRELVIFVT 434

Query: 416 PFLVK 420
           P ++K
Sbjct: 435 PRILK 439


>gi|161505946|ref|YP_001573058.1| outer membrane porin HofQ [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160867293|gb|ABX23916.1| hypothetical protein SARI_04127 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 400

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/406 (19%), Positives = 156/406 (38%), Gaps = 18/406 (4%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK----AD 78
           +      K AN  ++      +   + ++    +  ++  P     + +         A 
Sbjct: 1   MPAAQAGKAANVTLVVDDVPVVQVLQALA-EQERQNLVASPDVSGTLSLHLMDVPWRQAL 59

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
             V S   + L  +  G   + +      Q    +    +D   L++     + + +I +
Sbjct: 60  QTVASSAGLVL--RQEGNI-LHV----HSQAWQKEHHARQDAERLKLQANLPLENRSISL 112

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           +      +     + +           T       N+ A +  +K ++ +++    QV L
Sbjct: 113 QYADAAELAKAGEKLLSAKGTITVDKRTNRLLLRDNRTALAELEKWVSQMDLP-VAQVEL 171

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFS 255
              I  +    L+++G + ++  +    +                   V    G ++   
Sbjct: 172 AAHIVTINEKSLRELGVKWTLADAQQAGAVGDVTMLSSDLSVAAATSRVGFNIGRINGRL 231

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +  + 
Sbjct: 232 LDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLG 291

Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T VE+ SG T+ L G+
Sbjct: 292 MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 351

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +  ++ +PLL  IP LG LFR+     E  E+ +  TP LV
Sbjct: 352 FSRKNKSGRDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 397


>gi|16131268|ref|NP_417850.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|74313896|ref|YP_312315.1| outer membrane porin HofQ [Shigella sonnei Ss046]
 gi|89110619|ref|AP_004399.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           W3110]
 gi|157158971|ref|YP_001464845.1| outer membrane porin HofQ [Escherichia coli E24377A]
 gi|170082908|ref|YP_001732228.1| fimbrial transporter [Escherichia coli str. K-12 substr. DH10B]
 gi|218555936|ref|YP_002388849.1| outer membrane porin HofQ [Escherichia coli IAI1]
 gi|229774932|ref|YP_690743.2| outer membrane porin HofQ [Shigella flexneri 5 str. 8401]
 gi|238902482|ref|YP_002928278.1| putative fimbrial transporter [Escherichia coli BW2952]
 gi|256025882|ref|ZP_05439747.1| outer membrane porin HofQ [Escherichia sp. 4_1_40B]
 gi|293453697|ref|ZP_06664116.1| hofQ [Escherichia coli B088]
 gi|307140075|ref|ZP_07499431.1| outer membrane porin HofQ [Escherichia coli H736]
 gi|331644090|ref|ZP_08345219.1| protein transport protein HofQ [Escherichia coli H736]
 gi|1170332|sp|P34749|HOFQ_ECOLI RecName: Full=Putative DNA transport protein HofQ; Flags: Precursor
 gi|606325|gb|AAA58188.1| hopQ [Escherichia coli str. K-12 substr. MG1655]
 gi|1789793|gb|AAC76416.1| protein required for the utilization of DNA as a carbon source;
           fimbrial transporter homolog [Escherichia coli str. K-12
           substr. MG1655]
 gi|73857373|gb|AAZ90080.1| putative transport portein [Shigella sonnei Ss046]
 gi|85676650|dbj|BAE77900.1| predicted fimbrial transporter [Escherichia coli str. K12 substr.
           W3110]
 gi|157081001|gb|ABV20709.1| protein transporter HofQ [Escherichia coli E24377A]
 gi|169890743|gb|ACB04450.1| predicted fimbrial transporter [Escherichia coli str. K-12 substr.
           DH10B]
 gi|218362704|emb|CAR00330.1| fimbrial transporter [Escherichia coli IAI1]
 gi|238862385|gb|ACR64383.1| predicted fimbrial transporter [Escherichia coli BW2952]
 gi|260447590|gb|ACX38012.1| type IV pilus secretin PilQ [Escherichia coli DH1]
 gi|291321823|gb|EFE61254.1| hofQ [Escherichia coli B088]
 gi|315137967|dbj|BAJ45126.1| outer membrane porin HofQ [Escherichia coli DH1]
 gi|323939390|gb|EGB35601.1| type IV pilus secretin PilQ [Escherichia coli E482]
 gi|331036384|gb|EGI08610.1| protein transport protein HofQ [Escherichia coli H736]
          Length = 412

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|83647301|ref|YP_435736.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635344|gb|ABC31311.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 647

 Score =  186 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 76/458 (16%), Positives = 164/458 (35%), Gaps = 52/458 (11%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
           +   L         L  +  AN  +I+     I + ++I   L+     Q+ V  ++D  
Sbjct: 141 LVPILRPMVAKYGHLAGVAAANGLIISDHVNNIARIERIVSELDSPSNYQLEVIQLKDAW 200

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQAN---VILIGHDGKQMLNLDILIERDIAHLEMTL 127
           V D     +   +P  +   G   G AN   V+      + +L  D      +  L   L
Sbjct: 201 VGD-MVKLLEELAPSEL-GKGAPKGPANKFSVVADERSNRLILKGDENFRDKMRLLIAKL 258

Query: 128 RRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +  A S           +  +   +L G++  I  ++     +     +         +
Sbjct: 259 DQPAAVSGTTKVINLRHADAEALAELLKGLMGEIAPAKGEGAAAAPGGGKVSIYPDEGLN 318

Query: 181 S-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           +             + ++  L++    QV ++  I E+   + +Q+G Q +    +    
Sbjct: 319 ALVVRAEPSMMKEIEAIVQQLDVR-RAQVLIEAAIVEISDGLSRQLGVQMAAGDLTGKSG 377

Query: 228 KSFAADFGG------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            +   +F                        +    ++     R  +  ++ AL  +   
Sbjct: 378 PATVTNFTNVGISASAILAAIASNSTPSIGGDIAAVAIGEAEGRKGWGALIQALGTSGQA 437

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTV 322
             L+ P++  +    +    G    +        T  +S   T++   D G+ L  TP++
Sbjct: 438 NLLSTPSIITMDNLQSEIIVGQNVPFRTGQTGTGTDGTSNPFTTIERQDVGLTLRVTPSI 497

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + L I+ E S       +        R+  T+V   +  TIVL GL+ ++ +  +
Sbjct: 498 SDGDLVRLEIEQESSSIAPSNESASDIITNKRQIKTSVLADNAETIVLGGLMSENYKLSE 557

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +PLL  IP+LGALFR+++  +++  + +   P +++
Sbjct: 558 AKVPLLGDIPLLGALFRSTKREKDKQNLLVFLRPTILR 595


>gi|330839785|ref|YP_004414365.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
 gi|329747549|gb|AEC00906.1| type II and III secretion system protein [Selenomonas sputigena
           ATCC 35185]
          Length = 447

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 78/438 (17%), Positives = 174/438 (39%), Gaps = 23/438 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +            F+     A  P   E   A +      I +   + + L+  +  ++ 
Sbjct: 3   ISPRVGAFFLAAWFAGALPAAASPLTLEVVDADVTALLTSIARLSGLDLILDDSVKGRIS 62

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--LIERDIA 121
           + ++DV   +P +A +++   + + +  ++ G+  ++    +      + +  +   D+ 
Sbjct: 63  LSLKDV---EPEEALMLISRAKGLAV--QHEGKVLLVRAAKEAAPFYRMHVLPVHHADLD 117

Query: 122 HLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                ++  + ++ I        +    +          +  ++ +   L   G  +   
Sbjct: 118 TAFAAVKLSLGEAGISAIDENKKNGKEDISEQGLYRTGERLLIDRATNALLFYGTEEE-K 176

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           + ++ V++ L++   +QV+L+  +  + ++  K++G     +     P  +  +   G  
Sbjct: 177 ARAEAVLHSLDVPT-EQVSLEARVVALEKNAAKELGVDWDWSPLPIDPHGTSKSGAEGSR 235

Query: 239 VSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
               G+        R          +   + AL        LA P +T + G+ A    G
Sbjct: 236 RGIDGEVPGVIRFGRTPEGKPYEFYYRAKIAALITDGKANVLARPNITTLQGREAVINIG 295

Query: 291 GQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           G        ++    + +      G++L +TP +   G I  R+ TEVS PV  V+A   
Sbjct: 296 GSVPVPETQTTNSTVTTSITYKKAGIILRYTPRIHENGEITARVHTEVSSPVY-VDALKA 354

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             ++ R ADTTV L  G T+V+ GL+  +  ++   +PLL  IPILG  F++ R  + ++
Sbjct: 355 YKFQERSADTTVRLKDGETMVIGGLIGSEESRVFAKVPLLGDIPILGTFFKSVRRTKTDS 414

Query: 409 EIFIAATPFLVKPVAMRD 426
           EI I  T  +++  +   
Sbjct: 415 EIMIFLTAHILRDTSPPA 432


>gi|126665040|ref|ZP_01736023.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
 gi|126630410|gb|EBA01025.1| Type II secretory pathway, component PulD [Marinobacter sp. ELB17]
          Length = 640

 Score =  186 bits (471), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 85/462 (18%), Positives = 159/462 (34%), Gaps = 70/462 (15%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDVQDV 69
            L         L  +  ANA +++     I + +++   L+     +V ++Q+       
Sbjct: 144 ILRPLVAKYGHLAAVPAANALIVSDHYANIQRIEQLVKELDSPAKYEVEVIQLDEAW--- 200

Query: 70  LVSDPTKADVVVHSPRTMYLFG--KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            V D     +   +P  +   G    V + +V       + +L  D      +  L   L
Sbjct: 201 -VGD-MVTLLQELAPDELARNGTENAVRKYSVTADERSNRLILRGDQNFRAKMRGLISQL 258

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSK 182
            +  A           T VL       +     +     EL       +  +      + 
Sbjct: 259 DQPSASG-------GATKVLRLKNADAKSLADLLKGVMGELVRETAGDNRPSGQFAVFAD 311

Query: 183 KVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           + +N L I G                    QV ++  I E+  ++ +Q+G Q +    SS
Sbjct: 312 EGLNALVIRGEPSLMQEAEQIVMALDIRRAQVMIEAAIVEISENMGEQLGVQLAAGDESS 371

Query: 225 GPSKSFAADFG-----------------GKFVSEGGDFSVKGVL---DRFSFETVLHALE 264
           G       +                   G   +  G  +        +  ++  ++ AL 
Sbjct: 372 GGFPVLGTNLASGGMLGLNQVISAVLGDGTVPALAGGLTAGAGDRNRNGVTWGLLIQALS 431

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVTTHDYGVVLH 317
            ++A   L+ P++  +  Q +    G    ++T  +       +   T++   D G+ L 
Sbjct: 432 TSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQAAVSGEGLTNPFTTIERRDVGLTLK 491

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            TPT+ + G + L ++      V              R+  TTV    G TIVL GL+KD
Sbjct: 492 VTPTISADGLVRLVVEQTTENVVPTTVAGASDLITNKREIKTTVLADDGETIVLGGLMKD 551

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           D +  K  +PLL  IP LG LF +   +R +  + +   P +
Sbjct: 552 DYEVQKSKVPLLGDIPYLGRLFSSESESRVKRNLLVFLRPTI 593


>gi|217967423|ref|YP_002352929.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
 gi|217336522|gb|ACK42315.1| type II and III secretion system protein [Dictyoglomus turgidum DSM
            6724]
          Length = 1421

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 70/247 (28%), Positives = 111/247 (44%), Gaps = 13/247 (5%)

Query: 173  RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                  SS + ++  L+     QV + V + EV R+ +K IG +          S    +
Sbjct: 1186 GPADQVSSVESMIAKLDKPTP-QVKIDVQVIEVSRENVKDIGIEW---------STGSIS 1235

Query: 233  DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                   + G       +++       + ALE     R LA+P++T +SG  A+    G 
Sbjct: 1236 TGLQITANLGWQDLRVSIVNPGQISANIRALETQNKARILAQPSMTTLSG-KATRIMIGD 1294

Query: 293  HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             +      + G   V+  D G++L+ TPTV + G I   I  +VS     V+  D+P   
Sbjct: 1295 RVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANINPQVSTIQGYVS--DVPIIS 1352

Query: 353  VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             R+A T V L +G T+ L GLL+ +       +PLL  IPILG LF+  +  + E E+ I
Sbjct: 1353 TREAQTIVNLKNGETLALGGLLRQEEIDSMSKVPLLGDIPILGELFKARKTQKVERELII 1412

Query: 413  AATPFLV 419
              TP L+
Sbjct: 1413 LITPKLI 1419


>gi|205356871|ref|ZP_02343070.2| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205325673|gb|EDZ13512.1| protein transport protein HofQ [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 389

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 131/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAALAELEKWVSQMDLP-VAQVELVAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S                   V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GSVGDVTTLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEEERRELVVFITPRLV 386


>gi|399792|sp|P31700|GSPD1_ERWCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
 gi|148434|gb|AAA24831.1| secretory component [Erwinia chrysanthemi]
          Length = 712

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241
           +  IAE++      +G Q +   +      +                           + 
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +     R ++  +L AL        LA P++  +    A+F  G +    T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352
           T         +V     G+ L   P +     + L+I+ EVS    G  + +     ++ 
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642

Query: 413 AATPFLVK 420
              P +++
Sbjct: 643 FLRPTIIR 650


>gi|222083138|ref|YP_002542503.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
 gi|221727817|gb|ACM30906.1| general secretion pathway protein D [Agrobacterium radiobacter K84]
          Length = 714

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/277 (24%), Positives = 111/277 (40%), Gaps = 13/277 (4%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
               V   E         Q      ++++  L++    QV ++  IAEV  +   + G +
Sbjct: 407 HTSVVADVENNALLISTTQREYEHIEQILKQLDV-MPTQVLIEAVIAEVTLNDQLKFGLR 465

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                   G   S  +D        G            +    L+AL   T +  ++ PT
Sbjct: 466 WFFENGKFGVGLSDLSDGSTGASFPG----FAWTFASSNVGATLNALSSITNVNIVSAPT 521

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIG 329
           L A++ Q A+   G Q    T  S++  +S       +   D GV+L   P V S GR+ 
Sbjct: 522 LMALNNQKATLQVGDQVPIVTQQSASTTSSNTAIVSSIDLKDTGVILTVLPRVNSSGRVM 581

Query: 330 LRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L IQ EVS  V    +  D P+ + RK  T V +    ++ L GL++         +P+L
Sbjct: 582 LDIQQEVSNVVKTTTSGIDSPTIQQRKLSTKVIVDDNESVALGGLIQQSNTLNHSQVPIL 641

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            K+PI G  F+N      +TE+ I   P +V+ V   
Sbjct: 642 GKMPIFGNAFKNKEDTINKTELIIFIKPRIVRDVRQA 678


>gi|315633544|ref|ZP_07888834.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
 gi|315477586|gb|EFU68328.1| type IV pilus secretin PilQ [Aggregatibacter segnis ATCC 33393]
          Length = 474

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 69/410 (16%), Positives = 143/410 (34%), Gaps = 30/410 (7%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHS---PRTM 87
             A +  +  ++   + +++ ++  +   + + + +V +     + A +          +
Sbjct: 36  KQAPLVPTLQQLALAQNVNLLIDDELQGTLTLKLDNVDLDQLFRSVAKIKQLDLWQEEGI 95

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           Y   K    A       + + +  L    E  +A   + L    A   ++        +L
Sbjct: 96  YYLSKRDTVAKFTGNMTEPQAIAALPSEEETSLATATIKLHFAKASEVMKSLTGGSGSML 155

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                   D +  + L +         +       K +        +Q+ ++  I  +  
Sbjct: 156 SPNGSITFDDRSNLLLIQDEPKSIANLKKLIKELDKPI--------EQIAIEARIVTINA 207

Query: 208 DILKQIGFQHSITG---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + LK +G +  I                      +     +        G        ++
Sbjct: 208 ESLKDLGVRWGIFNPTENAHKIAGSLAANGFDNIANQLNVNLPTATTPAGSIALQVAKIN 267

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
               +  L ALER   +  +A P L   + +SAS   G +  Y  V+  +G  SV   + 
Sbjct: 268 GRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTELPYIMVNEKSGTQSVEFREA 327

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVL 370
            + L  TP +    +I L +    + P   V  G  ++ S   ++ +T V    G TIVL
Sbjct: 328 VLGLEVTPHISLDKQILLDLIVSQNAPGSRVAYGLGEVVSIDKQEINTQVFAKDGETIVL 387

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G+  D I +  + +PLL  IP +  LF       ++ E+ I  TP +++
Sbjct: 388 GGVFHDTITKSLDKVPLLGDIPGIKHLFSKESDRHQKRELVIFVTPHILR 437


>gi|145300643|ref|YP_001143484.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|1170051|sp|P45778|GSPD_AERSA RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|516351|emb|CAA56668.1| ExeD [Aeromonas salmonicida]
 gi|142853415|gb|ABO91736.1| general secretion pathway protein D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 678

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 54/273 (19%), Positives = 100/273 (36%), Gaps = 25/273 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +  ++V+  L+I    QV ++  I E+       +G Q + T           
Sbjct: 330 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 388

Query: 232 ----------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                               G      G   +       ++  ++ AL  +T    L+ P
Sbjct: 389 LPIGSVAIAAKDYNENGTTTGLADLAKGFNGMAAGFYHGNWAALVTALSTSTKSDILSTP 448

Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + ASF  G +         + +S     ++     G  L  TP +     + L
Sbjct: 449 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLTVTPQINEGDSVLL 508

Query: 331 RIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            I+ EVS        G     P++  R     V + SG T+VL GL+ +  Q+    +PL
Sbjct: 509 NIEQEVSSVAQKQATGTADLGPTFDTRTIKNAVLVKSGETVVLGGLMDEQTQEKVSKVPL 568

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IP+LG LFR++     +  + +   P +++
Sbjct: 569 LGDIPVLGYLFRSTNNTTSKRNLMVFIRPTILR 601


>gi|319785509|ref|YP_004144985.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171397|gb|ADV14935.1| general secretion pathway protein D [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 707

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 64/279 (22%), Positives = 111/279 (39%), Gaps = 12/279 (4%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                  V   E                +++++ +++    QV L+  IAEV  +   + 
Sbjct: 399 PPAHATVVADIENNALLIQTTARDYERIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G +          S S  A         G ++S        + +  L+AL   T +  ++
Sbjct: 458 GLRWFFENGGMKISVSDVAKGVAAAALPGFNWSYAT----DNIQVTLNALSSITDVNVIS 513

Query: 274 EPTLTAISGQSASFTSGGQHLYK------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            PT+ A++ Q A    G Q              S+   SV   D GV+L  TP + + GR
Sbjct: 514 APTIMALNNQKAVLQVGDQVPIATRQVVDQTLGSSPVVSVEMKDTGVILTVTPRINNAGR 573

Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + L I+ EVS       +  D P+ + RK  T V +  G ++ L GL++      +  +P
Sbjct: 574 VMLDIEQEVSNVTKTTSSGIDSPTIQQRKIQTRVLVNDGESLALGGLIQSRNNVDRTQVP 633

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L  IPI+G  F+    +   TE+ I   P +V+ +   
Sbjct: 634 ILGDIPIIGNAFKQKTDSIGRTELIIFIRPHVVRDINEA 672


>gi|261493374|ref|ZP_05989900.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
 gi|261496640|ref|ZP_05993020.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261307843|gb|EEY09166.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           OVINE]
 gi|261311018|gb|EEY12195.1| competence protein E [Mannheimia haemolytica serotype A2 str.
           BOVINE]
          Length = 437

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 99/241 (41%), Gaps = 13/241 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239
            +Q+ ++  I  +  + L+++G +  I    +G                +   +      
Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNDVTNNLNVNFPIT 244

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                      ++    +  L ALE+  ++  +A P L   + + AS   G +  Y   +
Sbjct: 245 GGASAVLQVASINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + + AT V   +  + L   P + +  +I L +    + P     +  + +   ++ +T 
Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G TIVL G+ +   Q+ ++ +P+L  IP +  LF  +R    + E+ I  TP+++
Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424

Query: 420 K 420
           +
Sbjct: 425 Q 425


>gi|88861068|ref|ZP_01135703.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
 gi|18643169|gb|AAL76242.1|AF441248_2 WmpD [Pseudoalteromonas tunicata]
 gi|88816996|gb|EAR26816.1| General secretion pathway protein D [Pseudoalteromonas tunicata D2]
          Length = 689

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 47/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+  L++    QV ++  I EV       +GFQ            +      G     
Sbjct: 341 EGVIAKLDVR-RAQVLVEAIIVEVFEGDGVNLGFQWINKQGGMLQFNNGTTVPVGSLGVA 399

Query: 242 G---------------------------------------GDFSVKGVLDRFSFETVLHA 262
           G                                       G   +     R  +  +L A
Sbjct: 400 GELARDKTIKKTVLGTNEGSANQYEETKEGDLTALASLLGGVNGLALGFARGDWGAILQA 459

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317
           +   T    LA P++T +  + AS   G +    T S +         +V   + G+ L 
Sbjct: 460 VSTDTNSNILATPSVTTMDNEEASMIVGQEVPIITGSQTGNNNTNPFQTVERQEVGIKLK 519

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS            +   R+  TTV    G  +VL GL+ +D
Sbjct: 520 VTPQINDGSAVQLTIEQEVSSVSGATAVD--ITINKREVTTTVLADDGAMVVLGGLIDED 577

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +Q+    +PLL  +PI+G LF+++  NR +  + I   P +++  A
Sbjct: 578 VQESVSKVPLLGDLPIIGHLFKSTSTNRRKRNLLIFIRPTIIRDSA 623


>gi|259982|gb|AAB24178.1| OutD=pectic enzyme secretion protein [Erwinia chrysanthemi,
           Peptide, 712 aa]
          Length = 712

 Score =  185 bits (470), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 113/308 (36%), Gaps = 33/308 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+V+ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 350 SSGGRTIVIQGKEVTVRAHDQTNSLIITRPPDIMRDL------EQVINQLDIRRP-QVLV 402

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----------------FVSE 241
           +  IAE++      +G Q +   +      +                           + 
Sbjct: 403 EAIIAEIQDADGLNLGIQWANKRAGMTQFTNTGIPISTAMIGTDQFRSDGTLTTAYASAL 462

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +     R ++  +L AL        LA P++  +    A+F  G +    T S +
Sbjct: 463 SNFNGITAGFYRGNWSMLLTALSSDGKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 522

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYR 352
           T         +V     G+ L   P +     + L+I+ EVS    G  + +     ++ 
Sbjct: 523 TVGSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVAEGNGSSNSSLGVTFN 582

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +  T+V+ GLL     +    +PLL  IP LG+LFR+      +  + +
Sbjct: 583 TRTVNNAVMVTNRETVVVGGLLDKTAIETNNKVPLLGDIPWLGSLFRSKTQTMSKRNLML 642

Query: 413 AATPFLVK 420
              P +++
Sbjct: 643 FLRPTIIR 650


>gi|261339183|ref|ZP_05967041.1| hypothetical protein ENTCAN_05409 [Enterobacter cancerogenus ATCC
           35316]
 gi|288319030|gb|EFC57968.1| general secretion pathway protein D [Enterobacter cancerogenus ATCC
           35316]
          Length = 643

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 58/265 (21%), Positives = 106/265 (40%), Gaps = 18/265 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--GSSSGPSKSFAADFGGKFV 239
           +KV++ L+I    QV ++  IAEV+      +G Q +    G   G +    +      +
Sbjct: 331 EKVIDKLDIRRP-QVLVEAIIAEVQDGNGMDLGVQWTGKHGGVQFGATGLPISQVKNGTM 389

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +        F  ++ AL   +    L+ P++  +  + ASF  G      + S
Sbjct: 390 KGTAFTGLATGFFNGDFGALVTALSTGSKNDILSTPSVVTLDNKEASFNVGQDVPVLSGS 449

Query: 300 SS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRV 353
            +        SV     G  L   P +     I L+I+ EVS             P++  
Sbjct: 450 QTTSGDNVFNSVERKTVGTKLKIVPQINDGDMIHLKIEQEVSSVDASATEDASLGPTFNT 509

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+VL GL+++  ++    +PLL  IP++G LFR +  +  +  + + 
Sbjct: 510 RTINNEVMVHSGQTVVLGGLMENVTKETVSKVPLLGDIPLVGQLFRYTSEDTSKRNLMVF 569

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVED 438
               +++          DD+YS   
Sbjct: 570 IHTTVLRD---------DDNYSAAS 585


>gi|187731764|ref|YP_001882066.1| outer membrane porin HofQ [Shigella boydii CDC 3083-94]
 gi|187428756|gb|ACD08030.1| protein transporter HofQ [Shigella boydii CDC 3083-94]
          Length = 412

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +      +    T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMIVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|119476010|ref|ZP_01616362.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450637|gb|EAW31871.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 630

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 80/442 (18%), Positives = 153/442 (34%), Gaps = 39/442 (8%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           M+  L       A + P    NA V+      I   +++   L+K        ++ DV+V
Sbjct: 142 MAEALRPLMSKDAVIKPYLATNALVLADHASNISSAQELIQQLDK----TSDSEI-DVIV 196

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
                A+ ++ S  T+   G     A    + +       +L  D    +   +L   L 
Sbjct: 197 LQHADAESILQSLSTLLPSGSQQASALNITISINERSNSILLAGDPAKRKQFRNLIKKLD 256

Query: 129 RFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRN 174
           + +             V+      +L  + ++IQ +Q+                      
Sbjct: 257 KPLDGQGNTDVVYLHYVDASEIVPILENLAKSIQSNQKDTDSNISIEASKSANALVINAP 316

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSG 225
               ++ K +++ L+I    QV ++  + EVR ++   +G                +   
Sbjct: 317 PSILTTMKSIISQLDIR-RAQVMVEAILVEVRGELASDVGVTWITDPDNSIVGAVNTLGN 375

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
              + A   G       G     G  +    +  L AL        L+ PT+ AI  + A
Sbjct: 376 LPLANAPSDGSALPFSAGRGFTFGYFNGGDLQAALRALSATQNANILSTPTIVAIDNEEA 435

Query: 286 SFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           S   G    + T  ++          T++   D G  L  TP +     I L I  +   
Sbjct: 436 SLLVGQNVPFITGQATSSASSTNDPFTTIERQDIGTSLVVTPRINQGDSITLEIHQKTET 495

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               ++         R+  T   +     +V+ GL+ D+  ++ E +PLL  IP LG+LF
Sbjct: 496 IAPSIDIASDIVTNKREIITKALIRDDQVLVIGGLINDEETEIIEKVPLLGDIPYLGSLF 555

Query: 399 RNSRFNREETEIFIAATPFLVK 420
            +   +  +T + +   P ++K
Sbjct: 556 SSKGTSHTKTNLMVFIHPTILK 577


>gi|326796602|ref|YP_004314422.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
 gi|326547366|gb|ADZ92586.1| general secretion pathway protein D [Marinomonas mediterranea
           MMB-1]
          Length = 623

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 83/474 (17%), Positives = 172/474 (36%), Gaps = 65/474 (13%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-----SIGLNKVIILQ 61
              + +   L    P    L  + E NA +I+     I + + I     S    ++ +++
Sbjct: 129 AVASELVPILRPLIPQYGHLAAVNEVNALIISDHAANIRELEDIISRLDSTVEGQIRVVR 188

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG---------QANVILIGHDGKQMLNL 112
           +          D     + + S     + G   G          + +I      + +L  
Sbjct: 189 LKHAWA----GDL----IEMLSQ---LVEGAEAGNGRKSSASNTSKIIADERTNRLVLKG 237

Query: 113 DILIERDIAHLEMTLRR-------------FIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                  I  L   L +               AD+    E+++  +      ++    + 
Sbjct: 238 KEATLDQIEDLIQQLDQPSDSTTRLKVIPLRYADAKTTAELITGLLSAEKTAQSSDRPES 297

Query: 160 AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           +   ++  L+    +   N  +    V++ L+I    QV ++  I EV+ +    +GFQ 
Sbjct: 298 SFVQADESLNALVVSAEPNVMADILGVLSELDIP-RAQVLIEAIIVEVKMEGSDALGFQW 356

Query: 218 SIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------TV 259
                        G++   + S   D     V+     S    +   SF          +
Sbjct: 357 LFGDTSDSTTPVLGTNFSSAGSSLTDIATSVVAGTPTLSNGITVGAASFNSDGDLNMAGI 416

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
           L A+E  +    L+ P +  +  Q +    G    ++T   S        + +  D G+ 
Sbjct: 417 LQAIESNSNSNLLSTPKIMTLDNQKSKILVGETRPFQTGGYSDSSSSAFVTTSREDIGLT 476

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP + +   + + +   V       ++        R+ +TTV   +  TIVL GL++
Sbjct: 477 LEVTPHINADNEVKMEVNQIVEAASPEASSLGT-ITTKREIETTVIAGNRKTIVLGGLIE 535

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           D++ ++++ +PLL  IPILGALFR+  +   +  + +   P +++  V   D++
Sbjct: 536 DNVVEVEQKVPLLGDIPILGALFRSKSYENNKKNLLVFIRPTILRSAVEAEDMA 589


>gi|292489334|ref|YP_003532221.1| type II secretion system protein OutD [Erwinia amylovora CFBP1430]
 gi|292898442|ref|YP_003537811.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291198290|emb|CBJ45396.1| type II secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291554768|emb|CBA22567.1| Type II secretion system protein outD [Erwinia amylovora CFBP1430]
 gi|312173499|emb|CBX81753.1| Type II secretion system protein outD [Erwinia amylovora ATCC
           BAA-2158]
          Length = 645

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 62/400 (15%), Positives = 133/400 (33%), Gaps = 24/400 (6%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  + ++                         AD        + + G  + +  ++
Sbjct: 205 ASAPQVAEILNFINGDSKTAGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
                       D      + +L+      + +    V               +  S+  
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLVEVLSGVSSNIQDKSESKSASPVAMSKDI 313

Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V  ++T+ +    N   +     ++++N L+I+   QV ++  I EV+      +G Q  
Sbjct: 314 VVKADTYTNSLIINAPPDVMGDLEEIINRLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
                     +  A       S           +       ++  +  AL+  +    LA
Sbjct: 373 NKNGGGTQFPASDAPVSNLIGSTIAEALSKTNGLAAGFYHGNWAGLFTALQTNSQNNILA 432

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
            P++  +    A FT G      T + +T       SV     G+ L   P +     + 
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGTQTTNTDGVYNSVDRKSVGIKLKVKPQINKGDSVL 492

Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + I+ EVS      +   +  ++  R     V + SG T+V+ GLL      ++  +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLVESGKTVVVGGLLDTTHSNVESSVPVL 552

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            +IP++G LFR +   + +  + +   P +++     DL+
Sbjct: 553 GQIPLIGRLFRYTSDKKSKRNLMLFIRPTIIRQQDKFDLT 592


>gi|332995712|gb|AEF05767.1| general secretion pathway protein D [Alteromonas sp. SN2]
          Length = 680

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 71/330 (21%), Positives = 120/330 (36%), Gaps = 48/330 (14%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            ++I+ E  S +    G       S  A E S   +           S ++V+  L+I  
Sbjct: 290 SASIQAEEKSGSTNSRGS-SNRDVSIDAHEDSNALV--ITAEPDMMRSLEEVVRQLDIR- 345

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241
             QV ++  I EV       +G Q            +     G   V+            
Sbjct: 346 RAQVQVEAIIVEVFEGDGTTLGVQWVSENGGGTQFSNGVIPVGSLAVALKEAEDDTDTEA 405

Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                                     G    +   +    +  V+ A+   T    LA P
Sbjct: 406 YVTDEGAVVRVTTTDEGDYTSLASLLGSANGLIAGIIDNGWGAVVQAVSTDTNSNVLATP 465

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LT +  + A F  G +    T +S+         +V   + G+ L  TP +     + L
Sbjct: 466 HLTTMDNEEAYFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 525

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D+Q+    +PLL  
Sbjct: 526 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 583

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IPI+G LF+++  ++ +  + +   P +V+
Sbjct: 584 IPIIGNLFKSTSTSKRKRNLMVFLKPTIVR 613


>gi|326796946|ref|YP_004314766.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
 gi|326547710|gb|ADZ92930.1| type II and III secretion system protein [Marinomonas mediterranea
           MMB-1]
          Length = 398

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/230 (23%), Positives = 99/230 (43%), Gaps = 5/230 (2%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   Q+ ++  IA+V R   K +G          G  ++         +      +V+  
Sbjct: 170 APVRQIEIQAHIAQVHRSAQKTLGVNWQTVIE-DGTRQALTGMVNLNAIGATSSLAVETT 228

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                   +L ALE       +++P +    GQSA   SG +  Y+        T+V   
Sbjct: 229 RGSSRLSLLLDALETDGFANVISKPKIVTAEGQSARIESGTEIPYQVQH--DDVTTVEFR 286

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
             G++L  TP V   G + L +   + +  +G     +PS    + +T VE+  G T+VL
Sbjct: 287 QAGLMLEVTPIVKEQGVLRLDL--NIHQDSVGEMVNGVPSLETNRLNTQVEVKDGETLVL 344

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G+ + +  +    +P+   +P+LGALFR+     E+ E+ +  TP L++
Sbjct: 345 GGIFRQEKFENISKVPVFGDLPVLGALFRHRSDKTEKVELLVFITPKLLQ 394


>gi|259910041|ref|YP_002650397.1| putative outer membrane porin HofQ [Erwinia pyrifoliae Ep1/96]
 gi|224965663|emb|CAX57195.1| outer membrane porin [Erwinia pyrifoliae Ep1/96]
          Length = 406

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/423 (17%), Positives = 158/423 (37%), Gaps = 35/423 (8%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV---- 69
           + L S   +V + P     + A +      +   +++++ +   +   + + ++DV    
Sbjct: 1   MALISPLAAV-QPPLTLAFDDAPVAQVLQALADYQQLNLMVAPGVEGHLSLRLKDVPWRQ 59

Query: 70  ----LVSDPTKADVVVHSPRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAH 122
               ++        +      + +F +      Q    +   + +QML L   I   +  
Sbjct: 60  ALQLVIKTGKL--TMEQQGNVLMVFPEGWQQEQQRKAAIRREEQEQMLPLFDRILTLVHA 117

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              ++   +     R+     ++ L     ++        L++T               +
Sbjct: 118 DAASVNTSLQRERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------E 162

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFV 239
             ++ L++   +Q+ L   I  +  + L+++G    ++G +        +          
Sbjct: 163 HWVHQLDVPL-EQIELAAQIVTISEESLRELGVTWGMSGEAQVADALRTSQLRVDLATGR 221

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
             G        LD    +  L ALE       +A P L     Q+AS   G +  Y+  +
Sbjct: 222 PAGVVGFTLAKLDGRLLDLELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVST 281

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            ++G+T++   +  + +  TP V + GRI   L I   V    +     ++ +   ++ D
Sbjct: 282 GNSGSTTMEFKEAMLAMEVTPVVQANGRILLKLHISQNVPGRNMRSGENEVLTIDKQEID 341

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V L  G T+ L G+ +         +P L  IP+LG LFR+    ++  E+ I  TP 
Sbjct: 342 TQVMLKDGQTLALGGIFQQQSATGSRKVPWLGDIPLLGTLFRHDVRQQKRRELVIFITPR 401

Query: 418 LVK 420
           L++
Sbjct: 402 LIR 404


>gi|332304529|ref|YP_004432380.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171858|gb|AEE21112.1| general secretion pathway protein D [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 690

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 94/503 (18%), Positives = 177/503 (35%), Gaps = 85/503 (16%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82
           L PI           +V       + +   +  ++ ++   ++ V  +   + D+V    
Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVDIVKLKF 205

Query: 83  -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            S   +        K+ G+ N        V+        M++ DI   + I +L   + +
Sbjct: 206 ASASELVRIIDSINKSTGKTNASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265

Query: 130 FIA-DSNIRVEMVSDTV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181
            +  + N RV  +  +       VL G+  +IQ  ++    S +  ++   +  A+  S 
Sbjct: 266 ELETNGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSSSNSNRGDISIEAHEDSN 325

Query: 182 --------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGP 226
                         + V+  L+I    QV ++  I EV       +G Q  S    +   
Sbjct: 326 ALVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEDYGAQQF 384

Query: 227 SKSFAADFGGKFVSE-------------------------------------GGDFSVKG 249
           S       G   V+                                      GG      
Sbjct: 385 SNGNVVGIGSLAVAAEQASDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLV 444

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGA 304
              +  +  VL A+   T    L+ P LT +  + A F  G +           +++   
Sbjct: 445 GAVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPF 504

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            SV   + G+ L  TP +     + L I+ EVS      +   +     R+  T V +  
Sbjct: 505 QSVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTNVIVDD 562

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VA 423
           GGTIVL GL+ DD+Q+    +P+L  IP +G LF+++  ++ +  + +   P +++  V 
Sbjct: 563 GGTIVLGGLIDDDVQESVSKVPILGDIPFIGNLFKSTTTSKSKRNLMVFIRPTIIRDGVT 622

Query: 424 MRDLSRPDDHYSVEDDAKAFFFN 446
             D+SR   +Y   +  K     
Sbjct: 623 ANDISRKKYNYIRAEQLKRQSEG 645


>gi|300718766|ref|YP_003743569.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
 gi|299064602|emb|CAX61722.1| secretion and pilus transport protein [Erwinia billingiae Eb661]
          Length = 388

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 129/331 (38%), Gaps = 10/331 (3%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV----LHGMVRTI 154
           +++              +E++    +    + +    + +     ++V         R +
Sbjct: 57  LLVWPESRALEQQRKEALEQEHQREKAEKEQLLITEVLTLAHADASIVNSSLQSERARLM 116

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            +       + T        + A  ++++ +  L++   +Q+ L   I  +  + L+++G
Sbjct: 117 SERGSVTVDARTNSLLLRDTRPALDATRRWVQALDVPL-EQIELAAHIVTINEESLRELG 175

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRT 271
            +   T +         + F           +    L   D    +  L ALE+   +  
Sbjct: 176 VRWGTTSNEQITQALRTSQFTVSLPVADAALTAGFTLARLDGKLLDLELSALEQENKLEI 235

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--G 329
           +A P L     Q AS   G +  Y+  S ++G T+V   +  + +  TP V + GRI   
Sbjct: 236 IASPRLFTSHQQPASIKQGTEIPYEVSSGTSGTTTVEFKEAVLGMEVTPVVQANGRILLK 295

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L++   V    +    G+  +   ++  T V L  G T+ L G+ +      +  +PL+ 
Sbjct: 296 LQLTQNVPGRTMRSGEGEYLAIDKQEIQTQVTLKDGQTLALGGIFQRSTASGQRKVPLIG 355

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IPILG+LFR     ++  E+ I  TP L++
Sbjct: 356 DIPILGSLFRYDINEQKRRELVIFITPRLIR 386


>gi|271501355|ref|YP_003334380.1| general secretion pathway protein D [Dickeya dadantii Ech586]
 gi|270344910|gb|ACZ77675.1| general secretion pathway protein D [Dickeya dadantii Ech586]
          Length = 713

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 118/308 (38%), Gaps = 33/308 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                T+++ G   T++   +   L  T      R+       ++V+N L+I    QV +
Sbjct: 351 SSGGRTIMIQGKEVTVRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLV 403

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------- 241
           +  IAE++      +G Q +   +      +         +                   
Sbjct: 404 EAIIAEIQDADGLNLGIQWANNRAGMTQFTNTGIPISTAVIGTDQFRKDGTLTTAYASAL 463

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G    +     R ++  ++ AL   +    LA P++  +    A+F  G +    T S +
Sbjct: 464 GSFNGITAGFYRGNWSMLMTALSSDSKNDVLATPSIVTLDNMEATFNVGQEVPVLTGSQT 523

Query: 302 TG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
           T         +V     G+ L   P +     + L+I+ EVS      ++ +     ++ 
Sbjct: 524 TVGSGNNIFNTVERKTVGIKLRVKPQINEGDSVLLQIEQEVSSVADSNSSANSSLGVTFN 583

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + +G T+V+ GLL     +    +PLL  IP+LG LFR+   + ++  + +
Sbjct: 584 TRTVNNAVMVSNGETVVVGGLLDKSTDENNSKVPLLGDIPVLGNLFRSKSQSVKKRNLML 643

Query: 413 AATPFLVK 420
              P +++
Sbjct: 644 FLRPTIIR 651


>gi|157162867|ref|YP_001460185.1| outer membrane porin HofQ [Escherichia coli HS]
 gi|254038556|ref|ZP_04872612.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|157068547|gb|ABV07802.1| protein transporter HofQ [Escherichia coli HS]
 gi|226839062|gb|EEH71085.1| transporter HofQ [Escherichia sp. 1_1_43]
 gi|323934619|gb|EGB31019.1| type IV pilus secretin PilQ [Escherichia coli E1520]
          Length = 412

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|85860072|ref|YP_462274.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
 gi|85723163|gb|ABC78106.1| general secretion pathway protein D [Syntrophus aciditrophicus SB]
          Length = 601

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 69/345 (20%), Positives = 119/345 (34%), Gaps = 38/345 (11%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                ++++  L       L   L                   L   V+   D      +
Sbjct: 234 EKNAIVMHVYPLQNASAEDLAKVLINLQPKETAPGSEKG-QPALSRNVQIQSDKATNSLI 292

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGS 222
                      Q                    V ++  I EV       +G +  ++  +
Sbjct: 293 ITASAEDYALLQGLIQKLDS--------SRPMVYIEALILEVNIVKDFNLGTEWRAMHDA 344

Query: 223 SSGPSKSFAADFGGKFVSEG-----------------------GDFSVKGVLDRFSFETV 259
            SG + S     GG     G                       G     G +       +
Sbjct: 345 GSGGTGSLLFGSGGLGPPAGTYNILPDVTTPATYSSGFTFGILGTGITLGGITFQDIGAM 404

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
           + A++  T I  L++P L  +  + A    G    Y T   +T      +S    D GV 
Sbjct: 405 IQAIKSDTDIHILSKPQLLTMDNEEAQIHVGKNVPYATRKETTTTNLDYSSYEYRDVGVS 464

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP + S G + ++I  EVS+     +   +P+   R  +TTV +    T+V+ G++ 
Sbjct: 465 LKITPHINSEGFVRMKINQEVSQVT-EDSPTGLPTTNKRAVNTTVTIKDSETVVIGGMIG 523

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D  Q     +PLL  IP+LG LF++   NRE+T +++  TP +++
Sbjct: 524 DSTQLGTYKVPLLGDIPVLGWLFKSRSSNREKTNLYVFITPRVIR 568


>gi|13475694|ref|NP_107261.1| general secretion proteinD [Mesorhizobium loti MAFF303099]
 gi|14026450|dbj|BAB53047.1| general secretion protein D [Mesorhizobium loti MAFF303099]
          Length = 708

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 66/280 (23%), Positives = 114/280 (40%), Gaps = 13/280 (4%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                  V   E                +++++ +++    QV L+  IAEV  +   + 
Sbjct: 399 APAHATVVADVENNALLIQTTARDYQRIEQILSKVDV-LPTQVMLEAVIAEVTLNDDLKY 457

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G +       +  S +  A         G ++S        + +  L+AL + T +  ++
Sbjct: 458 GLRWFFENGGTKVSVTDVAKAAAAATLPGFNWSYAT----DNIQVTLNALSKITDVNVIS 513

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPG 326
            PT+ A++ Q A    G Q    T  S            SV   D GV+L  TP + + G
Sbjct: 514 APTIMALNNQKAILQVGDQVPILTQQSQDTGNGSAPIINSVQMKDTGVILTVTPRINNAG 573

Query: 327 RIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           R+ L IQ EVS      ++  D P+ + RK  T V +  G ++ L GL++ +    +  +
Sbjct: 574 RVMLDIQQEVSNVTKTDSSDIDSPTIQQRKVQTRVLVNDGESLALGGLIQQNNSVDRSQV 633

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           P+L  IPILG  F+        TE+ I   P +V+ +   
Sbjct: 634 PILGDIPILGNAFKQKDDTIRRTELIIFIRPHVVRDINEA 673


>gi|117620160|ref|YP_855102.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561567|gb|ABK38515.1| general secretion pathway protein D [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 677

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 104/276 (37%), Gaps = 25/276 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +  ++V+  L+I    QV ++  I E+       +G Q + T           
Sbjct: 331 TAQPDVMAELEQVVAKLDIR-RAQVLVEAIIVEIADGDGLNLGVQWANTNGGGTQFTDTN 389

Query: 232 ADFGGKFVSE---------GGDFSVKGVLDR-------FSFETVLHALERATAIRTLAEP 275
              G   ++           G  ++    +         ++  ++ AL   T    L+ P
Sbjct: 390 LPIGSVAIAAKDYQKNGTTTGLAALAKDFNGMAAGFYKGNWAALVTALSTNTKNDILSTP 449

Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + ASF  G +         + +S     ++     G  L  TP +     + L
Sbjct: 450 SIVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLL 509

Query: 331 RIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            I+ EVS        G     P++  R     V + SG T+VL GL+ +  Q+    +PL
Sbjct: 510 NIEQEVSSVAQTQAPGTSTLGPTFDTRTIKNAVLVKSGETVVLGGLMDEKTQEKVSKVPL 569

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           L  IP+LG LFR++  +  +  + +   P +++   
Sbjct: 570 LGDIPVLGYLFRSTSNSTSKRNLMVFIRPTILRDAD 605


>gi|161616525|ref|YP_001590490.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161365889|gb|ABX69657.1| hypothetical protein SPAB_04341 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 389

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 129/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +    +D   L +     + + +I ++      +     + +      +    
Sbjct: 69  HSQAWQKEHSARQDAERLRLQANLPLENRSISLQYADAAELAKAGEKLLSAKGTIMVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+   +  +K ++ +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 129 TNRLLLRDNRAVLAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +                   V    G +     +  L ALE+   +  +A P L A   
Sbjct: 188 GAVGDVTTLSSDLSVAAATSRVGFNIGRISGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|39997126|ref|NP_953077.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|39984016|gb|AAR35404.1| type IV pilus biogenesis protein PilQ [Geobacter sulfurreducens
           PCA]
 gi|298506139|gb|ADI84862.1| type IV pilus secretin lipoprotein PilQ [Geobacter sulfurreducens
           KN400]
          Length = 894

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 128/338 (37%), Gaps = 27/338 (7%)

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF------IADSNIRVEMVSDTVVLHGMVRTIQ 155
           +  DG  +        + +A  E  L+R       +      +   +   ++        
Sbjct: 563 MQRDGNIVQIRPKSKIQTLADEEQALKRAKERGMELKTEVFDINFAAVGDIVSQFNAVKS 622

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           +     + + T        + A +  + ++  L++  E QV ++  I E      + +G 
Sbjct: 623 ERGTISQDARTNRVIVKDIEPALAEMRILLKNLDLP-EKQVLIEARIVEATSTFTRDLGV 681

Query: 216 QHSITGSSSGP--------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           Q  I  + SG               +   A+ F     S G        +     +  L 
Sbjct: 682 QWGIHSNDSGADIIRSVDAGFGGIVTPPPASGFPAATSSGGAVGISFAKMGSLQVDLRLS 741

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           A   A  ++ ++ P +  ++ ++A  + G    Y+T S+    T     +  + L  TP 
Sbjct: 742 AAAVAGLVKIVSTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPH 799

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           + + G + ++I+            G  P    ++A T + + +G T V+ G+  D     
Sbjct: 800 ITADGSVSMKIKAS----NNSAGTGSPPPINKKEATTELLVKNGETTVIGGIYVDSDTDE 855

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G+P L  IP+LG LF+++  N+ +TE+ I  TP +V
Sbjct: 856 DRGVPFLMDIPVLGWLFKSNTKNKTKTELLIFITPKIV 893


>gi|300313469|ref|YP_003777561.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
 gi|300076254|gb|ADJ65653.1| fimbrial type-4 assembly signal peptide protein [Herbaspirillum
           seropedicae SmR1]
          Length = 674

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 61/280 (21%), Positives = 113/280 (40%), Gaps = 31/280 (11%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPS 227
                A ++ +K++  ++IA   QV ++  I E      + +G +  +     G++ G S
Sbjct: 398 TDTLAALANVRKLIERIDIAAR-QVMIEARIVEADDSFARNLGVKLGLAARTQGAALGNS 456

Query: 228 KSFAADFGGKFVSEGG-----------------------DFSVKGVLDRFSFETVLHALE 264
            +   +  G+     G                        F++     +      L ALE
Sbjct: 457 YASVGELSGQTPPAAGTYLREPALGLGAGALAGSAPGSFAFTLFNAAAQRFLNVELSALE 516

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + ++ P L     Q+A    G +  Y+     +GAT+       + L  TP +  
Sbjct: 517 AEGRGKIVSSPRLVTADQQAALIEQGEEIPYQQSI-GSGATATAFKKANLKLEVTPQITP 575

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G + L    +V++   G       +   +   T V++  GGT+V+ G+      + +  
Sbjct: 576 DGNVILD--VDVNKDSRGSATPGGLAINTKHIKTKVQVEDGGTVVIGGIYTQTDNEHETR 633

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +PLL +IP+LGALFR+    R++TE+ I  TP +V P   
Sbjct: 634 VPLLGEIPLLGALFRSRNKVRDKTELLIFLTPRIVAPPRP 673


>gi|77456876|ref|YP_346381.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380879|gb|ABA72392.1| putative Flp pilus assembly protein, secretin [Pseudomonas
           fluorescens Pf0-1]
          Length = 422

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/284 (28%), Positives = 130/284 (45%), Gaps = 27/284 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------ 240
             QV   +   EV R  LK+ G      GS++    +                       
Sbjct: 130 PSQVQTDIRFVEVSRTKLKEAGTSIYGKGSNNFLFGAPGTVPNTGVTPGVVPLLNIDPRI 189

Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                      F++        F  +++ALE +    TLA P+L A+SGQSASF +GG+ 
Sbjct: 190 AAPSIPLANDMFNIVWGGGSSKFLGIVNALEGSGFAYTLARPSLVALSGQSASFLAGGEV 249

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMP 349
                S+++ + S+   ++G+ L  TPTV+S  RI L++  EVSE      + +    +P
Sbjct: 250 PIPVPSANSNSYSIEYKEFGIRLTLTPTVVSNDRIALKVAPEVSELDYNNGVTIGGTKVP 309

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           ++ +R+ DT++ L  G + V++GL+           P L  IP+LGA FRNS  NREE E
Sbjct: 310 AFTIRRTDTSISLADGESFVISGLISTRNASEVNKFPGLGDIPVLGAFFRNSSINREERE 369

Query: 410 IFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFNRVN 449
           + +  TP LV+P+A+     S P +       +  + +F    N
Sbjct: 370 LLMIVTPHLVQPLAVNAPLPSLPGEKLRNYDPNWYRLYFLENGN 413


>gi|330886181|gb|EGH20082.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           mori str. 301020]
          Length = 428

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 72  RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 128

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 129 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 187

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 188 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 247

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 248 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 306

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 307 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 366

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 367 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 418


>gi|304438627|ref|ZP_07398566.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304368465|gb|EFM22151.1| type II and III secretion system protein [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 428

 Score =  184 bits (468), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/435 (18%), Positives = 163/435 (37%), Gaps = 26/435 (5%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R     M   L      V+      +     +    +   +   + + ++  +   V 
Sbjct: 1   MKRWIIRAMFFGLLLFAAPVSAASVTVDVTGGDVRSVLLAAARMGNLPLIVDDSVTGTVT 60

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL---IGHDGKQMLNLDILIERDI 120
             +      +  +   ++ + R ++L  +  G   + +   +    +++    +      
Sbjct: 61  AHLT----GEAEEVLHLIAAARGIHL--EQHGDVWLAVGTEVRDAQRRVHTYVVRYADPE 114

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                       +    +   ++              QR +  + T        +    +
Sbjct: 115 ELAHAANLSLTGEGKRAIVSKNNKDTSENEDSDSDTPQRVLVDTATNTLLFYGTESEARA 174

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------SSSGPSKSFA 231
            ++++  L+     QV+L+  +  V +   K++G   S +           +SG      
Sbjct: 175 VREIVFALD-TAPRQVSLEARVVAVSKRAAKELGIDWSWSSLPQYPDVSRDASGSWHVNG 233

Query: 232 ADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            + G    S  G        +     F +   + AL      + LA P +T + G+ A  
Sbjct: 234 RNAGMDGTSAPGIIRFGRGPEGMPYEFYYTAAIRALVSEGKAKMLARPNVTTVQGREALI 293

Query: 288 TSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             G +     V++S   T+  +   + G++L +TP V + G I  R+ TEVS PV  V+ 
Sbjct: 294 NIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTADGNIVARVHTEVSTPVF-VDD 352

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                ++ R ADTTV L +G T+V+ GL+  D  +    IP L  +P+LGA FR  R +R
Sbjct: 353 LKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKIPFLGDLPLLGAFFRTVRTSR 412

Query: 406 EETEIFIAATPFLVK 420
            ETE+ I  T  ++ 
Sbjct: 413 NETELMIFLTAHVLD 427


>gi|188532939|ref|YP_001906736.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
 gi|188027981|emb|CAO95838.1| General secretion pathway protein D [Erwinia tasmaniensis Et1/99]
          Length = 646

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 67/366 (18%), Positives = 130/366 (35%), Gaps = 18/366 (4%)

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             AD       ++ L G  + +  +I            D      + +L+      + + 
Sbjct: 233 AVADTRT---NSVLLTGDELARQQLI--DAARNLDEEKDHSSNSKVFYLKHAKAENLLEV 287

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAG 192
              V               +  S+  V  ++T+ +    N   +     + ++N L+I+ 
Sbjct: 288 LSGVSGSIQDKAESKTASPVAMSKDIVVKADTYTNSLIINAPPDVMGDLEDIINRLDIS- 346

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----DFSV 247
             QV ++  I EV+      +G Q            +  A       S           +
Sbjct: 347 RAQVQVEAIIVEVQDADGLALGVQWFNQHGGGTQFPAADAPVSHLIGSTVAETLSKTNGL 406

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
                  ++  + +AL+  +    LA P++  +    A FT G      T S +T     
Sbjct: 407 AAGFYHGNWAGLFNALQTNSLNNILATPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGV 466

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVEL 362
             SV     G+ L   P +     + + I+ EVS      +   +  ++  R     V +
Sbjct: 467 FNSVDRKSVGIKLKVKPQINEGDSVLMEIEQEVSSVAEQSSVDPLGATFNTRLVKNAVLV 526

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            SG T+V+ GLL      ++  +PLL KIP +G LFR +   + +  + +   P +++  
Sbjct: 527 QSGKTVVVGGLLDTTHSNVESSVPLLGKIPFIGGLFRYTSDKKSKRNLMLFIRPTIIRQQ 586

Query: 423 AMRDLS 428
              DL+
Sbjct: 587 DSFDLT 592


>gi|242237793|ref|YP_002985974.1| outer membrane porin HofQ [Dickeya dadantii Ech703]
 gi|242129850|gb|ACS84152.1| type IV pilus secretin PilQ [Dickeya dadantii Ech703]
          Length = 426

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 76/451 (16%), Positives = 157/451 (34%), Gaps = 48/451 (10%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+ +     T++     +   + A+ P     +   +      + + +++++ +   +  
Sbjct: 1   MKGMFIYGMTLVMAAQCADTWANAETPVSLAFDDVPVQRVLQALAEHQQLNLVIAPGVEG 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            V + ++ V               R        +G   +     +G+ ++          
Sbjct: 61  NVSLTLERV-------------PWRQALDIILRMGDLTL---EREGRVLMVYPREHL--- 101

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
                 LR   A+ + R +     + L   +R  + ++ A  L       +   +  + +
Sbjct: 102 ----EMLRLQQAEEDERKQQQQALLNLSVTLRHAESTEVAASL--QSQRGTLLTERGSVT 155

Query: 181 SKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             K  N L +                      QV L   I  +  + LK +G    +   
Sbjct: 156 VDKRTNTLIVRDVSSALEQIRSWLDVLDKPLAQVQLAAHIVTISSEHLKALGVNWGLDAG 215

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            +        +F      E    +       L+    +  L ALE+   +  +A P L  
Sbjct: 216 DATKQALRMNNFNINLPVETPTVNAGFHLARLNGRLLDLELMALEQEDEVEIIASPRLFT 275

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              Q+AS   G +  Y+  S ++G+TS+   +  + +  TP +L  G I L +    + P
Sbjct: 276 AHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILQGGFITLNLLISQNMP 335

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              I    G+M +   ++  T V +  G TIVL G+ +    + +  +P L  +P +G L
Sbjct: 336 GRSIKQGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQQQKNRTERKVPGLGALPGIGRL 395

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           F +S       E+ I  TP L++        
Sbjct: 396 FSSSDRQNTRRELVIFITPTLIQASLPTKQP 426


>gi|320327874|gb|EFW83879.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 775

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAKSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|191167908|ref|ZP_03029712.1| protein transporter HofQ [Escherichia coli B7A]
 gi|190902081|gb|EDV61826.1| protein transporter HofQ [Escherichia coli B7A]
          Length = 412

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G + +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGVVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|322830997|ref|YP_004211024.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
 gi|321166198|gb|ADW71897.1| type IV pilus secretin PilQ [Rahnella sp. Y9602]
          Length = 420

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 75/358 (20%), Positives = 142/358 (39%), Gaps = 33/358 (9%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV----------EMVSDT 144
           GQ +V L     +Q L++ + +    + L+  +     + + +V          +    +
Sbjct: 60  GQMSVKLKDVPWQQALDIILQMNHLTSQLQGNVLLVSPEEDPQVVQQRIKDAADQQALQS 119

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---------- 194
            ++   V       +   LS      S  +Q  N+S+    N L +              
Sbjct: 120 PLISLTVPLQYADAKETALSLNAQKGSLLSQKGNASADTRTNTLLLRDTQAALDVVAPWV 179

Query: 195 --------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                   QV L   I  +  + L+++G +   TG           +F      E   F+
Sbjct: 180 KEMDLPLQQVQLAAHIVTMNSESLRELGVRWGFTGEEPITKAVRMNNFSMGMPVENPIFT 239

Query: 247 VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                  +     +  L ALE+   +  +A P L     Q+AS   G +  Y+  S ++G
Sbjct: 240 AGFNLAHISGRILDLELTALEQEDKVDIIASPRLLTAHMQTASIKQGTEIPYQVSSGASG 299

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361
           +TS+   +  + +   P +   GRI L +Q   + P   I  + G+  +   ++  T V 
Sbjct: 300 STSIEFKEAVLGMEVMPKIQRDGRIQLALQISQNMPGRSIKQSEGEALAIDKQEIKTQVT 359

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G TIVL G+ +   Q+    +P+L  IP++G+LF++   N +  E+ I  TP L+
Sbjct: 360 VKNGETIVLGGIFQRKNQKTDTKVPVLGDIPVVGSLFKHQYTNEQRRELVIFITPTLI 417


>gi|71733584|ref|YP_275230.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554137|gb|AAZ33348.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 759

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 442 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 500

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 501 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 560

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 561 RALETNGRTQILSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 620

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 621 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 680

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 681 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 738

Query: 432 DHYSV 436
           D Y  
Sbjct: 739 DDYRQ 743


>gi|302184967|ref|ZP_07261640.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae 642]
          Length = 775

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV+  
Sbjct: 458 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G              ++ T  +SV     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS              P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTTSGTNDANGNPRISTRSVATQVAAQSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|85712761|ref|ZP_01043805.1| Type II secretory pathway [Idiomarina baltica OS145]
 gi|85693401|gb|EAQ31355.1| Type II secretory pathway [Idiomarina baltica OS145]
          Length = 560

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 62/276 (22%), Positives = 105/276 (38%), Gaps = 21/276 (7%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  L           +  + ++ L    + QV L+  I EV      Q G + +    S 
Sbjct: 258 QAGLVSVTAQPSKLRAVGQFLDNLQSRLQRQVILEARIVEVTLGDQYQQGIRWNELNMSG 317

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                F         +   D       +   F   L  L+   +++ L+ P +TA + Q 
Sbjct: 318 RFDFGFNGSVPNDIAAATADGVFGLTFNSNRFTGFLELLQTQGSVQVLSNPRVTASNNQK 377

Query: 285 ASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIGLRI 332
           A    G    Y T  +S   T+VT                G+ L  TP +   G + L +
Sbjct: 378 AVIKIGEDEYYVTDVTSQTNTTVTQDALTSSNVDLTPFFSGISLDVTPQISDDGEVTLHV 437

Query: 333 QTEVSE-------PVIGVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
              V E         IG     +P     +R++DT V   SG  +VL GL+++   +  E
Sbjct: 438 HPSVVETKEQEKVITIGDETLRLPLARSNIRESDTIVRARSGEIVVLGGLMQNSTSENVE 497

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +PLL  +P++G LF+N   +  + E+ I   P ++
Sbjct: 498 KVPLLGDLPLVGNLFKNKSNDASKKELVILIKPTVI 533


>gi|167626227|ref|YP_001676727.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167596228|gb|ABZ86226.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 582

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 97/244 (39%), Gaps = 9/244 (3%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVS 240
            V+N +++   DQV ++  I EV R    ++GF +  S         K+F        V 
Sbjct: 335 NVINEIDVPN-DQVLIEARIVEVTRTSGLELGFNYTVSHPSGVDVGLKTFGTASESDTVV 393

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    +    S E  + ALE  +    +A P L   + ++A    G    Y+   +
Sbjct: 394 ASTAKLAYTLAGGLSLEMEIRALENESLANQVASPHLVVANNETAFIKDGQDVPYQQA-T 452

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRK 355
           ++GA SV   +  + L  TP +   G I +     +     S           P    R+
Sbjct: 453 ASGAASVAFQEAVLELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIIDKRE 512

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V +  G T+V+ G+      + +  IP L  IP LG LF N+     ++E+ I  T
Sbjct: 513 VTTKVMVKDGETVVIGGIYSKKQIETRNKIPFLGDIPYLGYLFSNTVIGDTDSELLIFIT 572

Query: 416 PFLV 419
           P ++
Sbjct: 573 PKII 576


>gi|332143347|ref|YP_004429085.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327553369|gb|AEB00088.1| general secretion pathway protein D [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 681

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 69/330 (20%), Positives = 117/330 (35%), Gaps = 47/330 (14%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            ++I+ E               + S  A E S   +           S ++V+  L+I  
Sbjct: 290 SASIQAEEQGSGATSRRASSNREISIDAHEDSNAIV--ITAEPDMMRSLEEVVRQLDIR- 346

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------- 241
             QV ++  I EV       +G Q            +     G   V+            
Sbjct: 347 RAQVQVEAIIVEVFEGDGNTLGVQWVSEEGGGTQFNNGVIGVGSLAVALRQAEDRETTQT 406

Query: 242 --------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                                     GG   +   +    +  V+ A+   T    LA P
Sbjct: 407 NITANGEVVETTDTIEGDFTALASLLGGANGLIAGVIENGWGAVVQAVSTDTNSNILATP 466

Query: 276 TLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LT +  + A F  G +           ++S    +V   + G+ L  TP +     + L
Sbjct: 467 HLTTMDNEEAFFIVGQEVPIITGTTTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQL 526

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I+ EVS      +     S   R+  TTV +  GGTIVL GL+ +D+Q+    +PLL  
Sbjct: 527 LIEQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGD 584

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+LG LF+ +  ++ +  + +   P +V+
Sbjct: 585 IPVLGHLFKTTSTSKRKRNLMVFLKPTIVR 614


>gi|82545746|ref|YP_409693.1| outer membrane porin HofQ [Shigella boydii Sb227]
 gi|81247157|gb|ABB67865.1| putative transport portein [Shigella boydii Sb227]
          Length = 412

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 154/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEYERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|313291988|gb|ADR51186.1| general secretion pathway protein D [Aeromonas veronii]
          Length = 679

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  S  ++V+  L+I    QV ++  I E++      +G Q            +  
Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386

Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
              G    +                     +        +  +  AL   T    L+ P+
Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446

Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  +  + ASF  G +         + +S     ++     G  L  TP +     + L 
Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506

Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           I+ EVS        G     P++  R     V + SG T+VL GL+ +  ++    +PLL
Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP+LG LFR++     +  + +   P +++   
Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601


>gi|193061725|ref|ZP_03042822.1| protein transporter HofQ [Escherichia coli E22]
 gi|193068780|ref|ZP_03049740.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194427057|ref|ZP_03059609.1| protein transporter HofQ [Escherichia coli B171]
 gi|194435813|ref|ZP_03067916.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|253771782|ref|YP_003034613.1| outer membrane porin HofQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254163319|ref|YP_003046427.1| outer membrane porin HofQ [Escherichia coli B str. REL606]
 gi|256020735|ref|ZP_05434600.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|260846175|ref|YP_003223953.1| putative fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|260857498|ref|YP_003231389.1| putative fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|260870117|ref|YP_003236519.1| putative fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|332281935|ref|ZP_08394348.1| outer membrane porin HofQ [Shigella sp. D9]
 gi|192932515|gb|EDV85112.1| protein transporter HofQ [Escherichia coli E22]
 gi|192957856|gb|EDV88299.1| protein transporter HofQ [Escherichia coli E110019]
 gi|194415018|gb|EDX31288.1| protein transporter HofQ [Escherichia coli B171]
 gi|194425356|gb|EDX41340.1| protein transporter HofQ [Escherichia coli 101-1]
 gi|242378917|emb|CAQ33712.1| protein involved in utilization of DNA as a carbon source
           [Escherichia coli BL21(DE3)]
 gi|253322826|gb|ACT27428.1| type IV pilus secretin PilQ [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253975220|gb|ACT40891.1| predicted fimbrial transporter [Escherichia coli B str. REL606]
 gi|253979376|gb|ACT45046.1| predicted fimbrial transporter [Escherichia coli BL21(DE3)]
 gi|257756147|dbj|BAI27649.1| predicted fimbrial transporter HofQ [Escherichia coli O26:H11 str.
           11368]
 gi|257761322|dbj|BAI32819.1| predicted fimbrial transporter HofQ [Escherichia coli O103:H2 str.
           12009]
 gi|257766473|dbj|BAI37968.1| predicted fimbrial transporter HofQ [Escherichia coli O111:H- str.
           11128]
 gi|323376744|gb|ADX49012.1| type IV pilus secretin PilQ [Escherichia coli KO11]
 gi|323959609|gb|EGB55261.1| type IV pilus secretin PilQ [Escherichia coli H489]
 gi|323969989|gb|EGB65264.1| type IV pilus secretin PilQ [Escherichia coli TA007]
 gi|332104287|gb|EGJ07633.1| outer membrane porin HofQ [Shigella sp. D9]
          Length = 412

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 81/425 (19%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S   +     N+   + I   ++         +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAGLITRQEDNILSVHSIAWQNNN--------IARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|218550647|ref|YP_002384438.1| outer membrane porin HofQ [Escherichia fergusonii ATCC 35469]
 gi|218358188|emb|CAQ90835.1| fimbrial transporter [Escherichia fergusonii ATCC 35469]
          Length = 426

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 83/429 (19%), Positives = 154/429 (35%), Gaps = 31/429 (7%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           ++     ++  L  + P        K A   ++          + ++    +  I+  P 
Sbjct: 12  EKKMKQWIAAILMMALPVA---QAAKPAKVTLVVDDAPVAQVLQALA-EQERQNIVVSPD 67

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQA----NVILIGHDGKQMLNLDIL 115
               V +             VV S     L  +  G      +      +  +     + 
Sbjct: 68  VSGLVSLHLIDVPWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQVR 124

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
               +      +    AD+    +     +   G +     + R +            N+
Sbjct: 125 RLASLPVEHRAIALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNK 175

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            A ++ +  ++ +++    QV L   I  +    L+++G + +   +             
Sbjct: 176 TALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLS 234

Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                      V    G ++    +  L ALE+   +  +A P L A   Q AS   G +
Sbjct: 235 SDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 294

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPS 350
             Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+  + G++ +
Sbjct: 295 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLT 354

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++ +T VE+ SG T+ L G+     +  K+ IPLL  IP LG LF +     E  E+
Sbjct: 355 IDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERREL 414

Query: 411 FIAATPFLV 419
            +  TP LV
Sbjct: 415 VVFITPRLV 423


>gi|83749638|ref|ZP_00946621.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
 gi|83723699|gb|EAP70894.1| GspD-related protein; cpaC1 [Ralstonia solanacearum UW551]
          Length = 401

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 82/333 (24%), Positives = 150/333 (45%), Gaps = 32/333 (9%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
           A        +AA        + +  ++++ + K  ++Q+P  V++  V +P     ++ S
Sbjct: 74  AATAEASRESAAKGPNCTGAMREHSEVTVPVGKSTMVQLPEPVRNRTVGNPHIVQAMLVS 133

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVS 142
           P+T+YL G+ VG  N+I+ G  G     +D+ +  D   L+ TLR  +  + N++V   +
Sbjct: 134 PQTLYLLGQEVGTTNMIVQGRSGSC-SVIDVSVGADPGGLQSTLRTLMPGAKNVQVSAAA 192

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFL----------------------SQSGRNQYANSS 180
           D++VL G V     +Q+ ++++  F+                         G    A   
Sbjct: 193 DSLVLGGSVSDSVQAQKVLDIANAFVMHQTRGPAQGDQGGAAQGGGAMQGLGATPGAPPR 252

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           S +++N++ +    QV L+V +AEV + ++ Q+G   ++    +G   S+       F+S
Sbjct: 253 SPRIINMMAVEAPQQVMLEVKVAEVSKTLIDQMGSALNV----NGAFGSWTFGALANFLS 308

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
              D       +    +  L A +    ++ LAEP+L AISGQ ASF +GG+        
Sbjct: 309 GSNDIVNFSKNNHLPLKFALDAQKGDGLVKVLAEPSLMAISGQEASFLAGGKVFIPVSQG 368

Query: 301 STG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
           +         +    +GV L FTPTV+  GRI 
Sbjct: 369 AATNGVANIILXEETFGVGLRFTPTVMEKGRIT 401


>gi|307555474|gb|ADN48249.1| protein transport protein HofQ precursor [Escherichia coli ABU
           83972]
          Length = 377

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 57  HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 116

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 117 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 175

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 176 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 356 DGKEDERRELVVFITPRLV 374


>gi|330830590|ref|YP_004393542.1| general secretion pathway protein D [Aeromonas veronii B565]
 gi|328805726|gb|AEB50925.1| General secretion pathway protein D [Aeromonas veronii B565]
          Length = 679

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 97/275 (35%), Gaps = 24/275 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  S  ++V+  L+I    QV ++  I E++      +G Q            +  
Sbjct: 328 TAQPDVMSELEQVVAKLDIR-RAQVLVEAIIVEMQDGDGLSLGVQWGNANGGGTQFTNSG 386

Query: 232 ADFGGKFVSEGG---------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
              G    +                     +        +  +  AL   T    L+ P+
Sbjct: 387 LPLGSAIAAGKDYQNGKTDTAAGLLKEFNGMAAGFYHGDWAMLATALASNTKNDILSTPS 446

Query: 277 LTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  +  + ASF  G +         + +S     ++     G  L  TP +     + L 
Sbjct: 447 IVTMDNKEASFNVGQEVPVQSGSQSSTTSDQVFNTIERKTVGTKLVVTPQINEGDSVLLN 506

Query: 332 IQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           I+ EVS        G     P++  R     V + SG T+VL GL+ +  ++    +PLL
Sbjct: 507 IEQEVSSVAQTQATGTANLGPTFDTRTVKNAVLVKSGETVVLGGLMDEQTKEQVSKVPLL 566

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP+LG LFR++     +  + +   P +++   
Sbjct: 567 GDIPVLGYLFRSTSNTTSKRNLMVFIRPTILRDAD 601


>gi|224585282|ref|YP_002639081.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224469810|gb|ACN47640.1| type II secretion system protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 379

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 73/319 (22%), Positives = 132/319 (41%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             Q    +   ++D   L +     + + +I ++      +     + +      +    
Sbjct: 59  HSQAWQKEHSAQQDAERLRLQANLPLENRSINLQYADAGELAKAGEKLLSAKGTIMVDKR 118

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A +  +K  + +++    QV L   I  +    L+++G + ++  ++  
Sbjct: 119 TNRLLLRDNRAALAELEKWGSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQA 177

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +    A              V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 178 GAVGDVATLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 237

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 238 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 297

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+
Sbjct: 298 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRH 357

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 358 DGKEDERRELVVFITPRLV 376


>gi|238758913|ref|ZP_04620085.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238702870|gb|EEP95415.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 641

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 16/288 (5%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           TI+  ++   L  T      +         +V++ L++    QV ++  I E +      
Sbjct: 305 TIRAHEQTNALVITAAPGLMKEL------SQVIDKLDVR-RAQVLVEAIIVETQNGEGLN 357

Query: 213 IGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           +G Q +    G  +    S A     +         +     + +++ +  AL   +   
Sbjct: 358 LGIQWANKFLGGVNFIKNSGATASSSEKGIPMMIAGLTAGFYKGNWDGLFSALATNSNNN 417

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG 326
            LA P++  +    A F  G +    T + +T       S++    GV+L   P +    
Sbjct: 418 ILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQPVGVMLKVKPQINQGD 477

Query: 327 RIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            + L I+ EVS      +         +  R  +  V + SG T+V+ GLL     ++  
Sbjct: 478 SVLLEIRQEVSSVADSTDTNTNNLGSVFNKRVVNNAVLVRSGETVVVGGLLDKKTNRIIN 537

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
            +P L  IP++G LFR ++   E + + +   P +++ V    L    
Sbjct: 538 KVPFLGDIPLIGGLFRQTKEKVERSNLILFIKPTILREVDDYSLVTSG 585


>gi|313673420|ref|YP_004051531.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312940176|gb|ADR19368.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 786

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 66/286 (23%), Positives = 122/286 (42%), Gaps = 22/286 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ G V + +   +    S +F+    ++  A    K V+  ++     QVT++  + EV
Sbjct: 507 VVKG-VLSPRGKVQVESKSNSFVVTDTKDSIAKV--KNVLKEVDKPTP-QVTIEARVVEV 562

Query: 206 RRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
                   G +                    +G +  +  +      +     ++  + +
Sbjct: 563 SDSNDLAYGIKWGANTKINRTSINFPNSIGINGDAGGYMVNLPIGAPTGALALTLGNISN 622

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            F+ +  + A+E     +T++ P +T +  Q A   SGG+ +      S   T   T D 
Sbjct: 623 TFNIDMAISAMESRNKAKTISSPKITTLDNQEAEIKSGGKAIIVP---SGDNTQSQTIDV 679

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L   P + +   I + I+ E S    G  +G       +KA T V L +G T V+ G
Sbjct: 680 GIKLKVKPHITANNMIFMEIEVEKSSL--GAVSGTNAETLEKKAKTQVLLANGETTVIGG 737

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + +D+  ++K  +P LSKIP+LG LFRN+   R + E+ +  TP +
Sbjct: 738 IYEDEQNEIKNEVPGLSKIPLLGWLFRNNIERRAKKELLVFITPRI 783


>gi|284923383|emb|CBG36477.1| protein transport protein [Escherichia coli 042]
          Length = 386

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|66046370|ref|YP_236211.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257077|gb|AAY38173.1| type II and III secretion system protein:NolW-like [Pseudomonas
           syringae pv. syringae B728a]
          Length = 776

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 59/260 (22%), Positives = 100/260 (38%), Gaps = 18/260 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV+      +G Q         S T  +   +       G    +    
Sbjct: 503 PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 562

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
            +        + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 563 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 622

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356
           ++ T  +SV     GV+L   P +   G + + IQ +VS+       +A   P    R  
Sbjct: 623 NTGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADSSGTTDANGNPRISTRSV 682

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V   SG T++L GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP
Sbjct: 683 ATQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITP 742

Query: 417 FLVKPVAMRDLSRPDDHYSV 436
            ++   +     +  D Y  
Sbjct: 743 RVI--TSSSQARQVTDDYRQ 760


>gi|260912709|ref|ZP_05919195.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
 gi|260633087|gb|EEX51252.1| type IV pilus secretin PilQ [Pasteurella dagmatis ATCC 43325]
          Length = 431

 Score =  184 bits (466), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 55/244 (22%), Positives = 100/244 (40%), Gaps = 17/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + LK++G +  +                   S  S+    +F    
Sbjct: 185 EQIAIEARIVTISDESLKELGVRWGLLNPTELSHRVAGSLDANGFSQISEQLNVNFATSI 244

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   +  +A P L   + +SAS   G +  Y   
Sbjct: 245 TPAGSLALQLAKINGRLLDLELTALERENNVEIIASPRLLTTNKKSASIKQGTEIPYVVT 304

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
           S      SV   +  + L  TP +    +I L +    + P   V   +G++ S   ++ 
Sbjct: 305 SGKNETQSVEFREAVLGLDVTPHISKDNQILLDLVVSQNSPGARVAYGSGEIVSIDKQEI 364

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D + +  + +P+L  IP++  LFR      ++ E+ I  TP
Sbjct: 365 NTQVVAKDGETIVLGGVFHDSMTKGVDKVPVLGDIPMIKHLFRKQNERHQKRELVIFVTP 424

Query: 417 FLVK 420
            ++K
Sbjct: 425 RILK 428


>gi|15603090|ref|NP_246162.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
 gi|12721580|gb|AAK03309.1| ComE [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 444

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 17/249 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT---------------GSSSGPSKSFAADFGGKF 238
           +Q+ ++  I  +  + L+++G +  +                   S        +F    
Sbjct: 181 EQIAIEARIVTMTDESLQELGVRWGLFQATEQAHTIAGSLAANGFSNIENQLNVNFSTNS 240

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G        ++    +  L ALER   I  +A P L   + +SAS   G +  Y   
Sbjct: 241 APVGSIALQLAKINGRLLDLELTALEREKHIEIIASPRLLTTNKKSASIKQGTEIPYVMK 300

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKA 356
                + SV   +  + L  TP +     I L +    +     V  + G++ S   ++ 
Sbjct: 301 RGKDKSESVEFREAVLGLDVTPHISKDNTILLDLLITQNTLGAPVVYDKGEIVSIDKQEI 360

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+  D + +    +PLL  +P+L  +F       ++ E+ I  TP
Sbjct: 361 NTQVVAQDGETIVLGGVFHDTMTKGVNKVPLLGDLPLLKHVFSQKTERHQKRELVIFVTP 420

Query: 417 FLVKPVAMR 425
            ++KP    
Sbjct: 421 HIIKPSQGS 429


>gi|307545360|ref|YP_003897839.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217384|emb|CBV42654.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 749

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/250 (24%), Positives = 103/250 (41%), Gaps = 14/250 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I EVR       G Q  +   +   S    A+  G   + G      G   
Sbjct: 480 PRQVQIETRILEVRLTGALNQGVQWYLGQLAGNASNPSVANASGSQGALGAGGVSLGGSS 539

Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301
                   + +  L AL+     + L+ P+L  ++ Q A    G              + 
Sbjct: 540 MFYSFVGDNLQVALRALQTRGLTQVLSAPSLVVLNNQQAQIQVGDNIPVNQTTVNTADAD 599

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTT 359
           T  +SV     GV+L   P +   G + + IQ +VS+       +    P    R   T 
Sbjct: 600 TTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADDNAAGSTASNPRISTRAVSTQ 659

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + SG T++L GL++ +  + +  +P LS IP LG LF +   +R+ TE+ +  TP +V
Sbjct: 660 VAVQSGQTVLLGGLIQQNNAESETRVPGLSSIPGLGRLFGSEARDRDRTELIVLITPKVV 719

Query: 420 -KPVAMRDLS 428
             PV  R+++
Sbjct: 720 NNPVQAREIT 729


>gi|307131443|ref|YP_003883459.1| general secretion pathway protein D [Dickeya dadantii 3937]
 gi|306528972|gb|ADM98902.1| General secretion pathway protein D [Dickeya dadantii 3937]
          Length = 696

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 54/262 (20%), Positives = 101/262 (38%), Gaps = 16/262 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +  A   +  ++  L++   +QV ++  + EV++     +G        + G S    
Sbjct: 384 SASPAAMQQAVSIIQQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWG--NKNYGGSNFNG 440

Query: 232 ADFGGKFVSEG-------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
            + G  F           G   +       S+ ++ +ALE       LA P++  +    
Sbjct: 441 VNVGNGFNQANPLVDALKGTEGLIAGFYHGSWGSLFNALESNKRNNILATPSVVTLDNHR 500

Query: 285 ASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           A F  G      T S +T       +V     G+     P +   G I L I  E+S   
Sbjct: 501 AEFNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLS 560

Query: 341 IGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                       + +R  +  V++    T+V+ GLL D+ ++    +PLL  IP LG LF
Sbjct: 561 DTSQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETANKVPLLGDIPWLGNLF 620

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R +  N ++  + +   P +++
Sbjct: 621 RYTSQNNDKRNLMLFIRPRIIR 642


>gi|320197345|gb|EFW71960.1| Type IV pilus biogenesis protein PilQ [Escherichia coli WV_060327]
          Length = 386

 Score =  184 bits (466), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTALGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|330938634|gb|EGH42200.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. pisi str. 1704B]
          Length = 554

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG               + 
Sbjct: 290 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 348

Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + + +                    +  V +    +  L A+E+      +++P +    
Sbjct: 349 NTSGNLTSNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 408

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 409 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 467

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 468 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 527

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 528 VVSESKSELLVFLTPRI 544


>gi|289648905|ref|ZP_06480248.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330987884|gb|EGH85987.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 775

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|320323732|gb|EFW79816.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 775

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDANGNPRISTRSVATQVAAQSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|218691667|ref|YP_002399879.1| outer membrane porin HofQ [Escherichia coli ED1a]
 gi|218429231|emb|CAR10041.1| fimbrial transporter [Escherichia coli ED1a]
          Length = 412

 Score =  183 bits (465), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 79/413 (19%), Positives = 156/413 (37%), Gaps = 21/413 (5%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
           +   +  +P ++ A    + +   ++   + + +     K+ ++  P     V +     
Sbjct: 6   AALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQVLAEQEKLNLVVSPDVSGTVSLHLTDV 65

Query: 77  -----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
                   VV S     L  +  G   + +           D +  ++           +
Sbjct: 66  PWKQALQTVVKSAG---LITRQEGNI-LSV----HSVAWQNDNIARQEAEQTRAQANLPL 117

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
            + NI ++      +     + +           T       N+ A S+ ++ ++ +++ 
Sbjct: 118 ENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALSTLEQWVSQMDLP 177

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
              QV L   I  +    L+++G + ++  +            G           +    
Sbjct: 178 -VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVTTLGSDLSVATATTHIGFNI 236

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV 
Sbjct: 237 GRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVE 296

Query: 309 THDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             +  + +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T VE+ SG 
Sbjct: 297 FKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGE 356

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+ L G+     +  ++ +PLL  IP  G LF +     E  E+ +  TP LV
Sbjct: 357 TLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFHHDGKEDERRELVVFITPRLV 409


>gi|330444859|ref|ZP_08308514.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
 gi|328489169|dbj|GAA03011.1| general secretion pathway protein D [Photobacterium leiognathi
           subsp. mandapamensis svers.1.1.]
          Length = 677

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 119/316 (37%), Gaps = 48/316 (15%)

Query: 151 VRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            ++       +  +  ET            +  + +++ L+I    QV ++  I EV+  
Sbjct: 303 AKSGSSKDEVMISAHPETNALIISAPSDVMNRLESIISQLDIR-RAQVHIEAMIVEVQEG 361

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------------------------- 241
                G Q            +  A  GG   ++                           
Sbjct: 362 AGVDFGVQWGSQDGGVIQFGNSGAPIGGLLSAQEAAKDKTTTQNRTDPNTGAQLPPIVTT 421

Query: 242 ------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                       GG       +    +  ++ A++    +  L+ P +T +  Q A+ + 
Sbjct: 422 ESGDLAPMAAFLGGVKGAAAAISMGDWTALVTAVQANRNVNVLSTPNITVLDNQEANLSV 481

Query: 290 GGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           G +    T SS+        T+V   D G+ L  TP +     + ++I+  VS+      
Sbjct: 482 GQEVPVTTGSSTGSNNDNPFTTVERKDVGIQLKVTPQINEGDSVQMKIEQVVSQVADANG 541

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           A D+  +  R+  T+V +  G  I L GL+++   + ++ +P+L  IP+LGALFR++   
Sbjct: 542 AVDI-RFDKRELTTSVLVKDGNMIALGGLMQEKTLESEQKVPILGDIPVLGALFRSTNDQ 600

Query: 405 REETEIFIAATPFLVK 420
            E+T + +   P +++
Sbjct: 601 TEKTNLMVFIRPTILR 616


>gi|291614284|ref|YP_003524441.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584396|gb|ADE12054.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 851

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 79/480 (16%), Positives = 163/480 (33%), Gaps = 81/480 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   +   A + +    + +   I+I L++ +   +      + V D + AD        
Sbjct: 184 PVTLQFRDANLKMVFEALSRSSGINILLDRDMRNDLK---ASIFVKDASVADALDLILMQ 240

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 V +  T++++     +            ++    L   D   ++  ++  +   
Sbjct: 241 NQLEKKVLNDSTVFIYPNTPAKIK-----EYQDLVIRTFQLTNADAKQMQTMIKTMLKTK 295

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I V   ++++++            AV+++E  ++    N+                   
Sbjct: 296 DIYVNEKNNSLIIRDTP-------EAVKMAEKLIASQDINEPE----------------- 331

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFGGKFVS 240
            V L+V + EV    L Q+G +                    +SG +             
Sbjct: 332 -VMLEVEVLEVLHSKLTQLGVKWPNQLGLSVNATPATSTATTTSGGAVVTTNTPAVPLTV 390

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G        ++       L   +       LA P +     + A    G +    T S 
Sbjct: 391 NGLRHINGDAINVTPLSMTLDLRKELGDSNLLASPRIRVKQHEKAKIMIGDRVPVITNSV 450

Query: 301 STGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS----EPVIGVNAGDMP 349
           +  AT       SV   D G+ L   P +   G + ++   EVS    +     +     
Sbjct: 451 TPVATGTPVVTGSVQYLDVGLKLEVEPDIHMDGEVAIKTYLEVSTIANQVTNAASGSVAY 510

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  +T + L  G T VLAGL+ D+ ++    +P L  +PILG LF ++  ++ +TE
Sbjct: 511 QIGTRNVNTVLRLKDGETQVLAGLINDEDRKSSASVPGLGDLPILGHLFSSNGDDKRKTE 570

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           I ++ TP +++ +   D+           D   F+    + +     + +  G    G+ 
Sbjct: 571 IILSITPHIIRNIHRPDV-----------DLAEFWSGTEDTLRNRPLSLQPVGMVNTGSA 619


>gi|330981434|gb|EGH79537.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aptata str. DSM 50252]
          Length = 589

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 64/305 (20%), Positives = 109/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV+  
Sbjct: 272 GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 330

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 331 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 390

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G              ++ T  +SV     GV
Sbjct: 391 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTNAGTTLSSVEYVQTGV 450

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS      N   A   P    R   T V   SG T++L 
Sbjct: 451 ILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGNPRISTRSVATQVAAQSGQTVLLG 510

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +  
Sbjct: 511 GLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI--TSSSQARQVT 568

Query: 432 DHYSV 436
           D Y  
Sbjct: 569 DDYRQ 573


>gi|109896562|ref|YP_659817.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
 gi|109698843|gb|ABG38763.1| general secretion pathway protein D [Pseudoalteromonas atlantica
           T6c]
          Length = 689

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 93/502 (18%), Positives = 176/502 (35%), Gaps = 84/502 (16%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVH-- 82
           L PI           +V       + +   +  ++ ++   ++ V  +   + ++V    
Sbjct: 146 LAPILRQLNDQAGGGNVVSHDASNVMMLTGRAAVVNRLVEIIERVDKAGDEEVEIVKLKF 205

Query: 83  -SPRTMY----LFGKNVGQAN--------VILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            S   +        K  G+A+        V+        M++ DI   + I +L   + +
Sbjct: 206 ASATELVRIIESINKTTGKASASGKDAPRVVADDRTNSIMVSGDIKARQRIVNLIERMDQ 265

Query: 130 FIADSN------IRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS- 181
            +  S       ++     + V VL G+  +IQ  ++    S +  ++    +    S+ 
Sbjct: 266 ELETSGNTRVIFLKYSKAEELVKVLQGVSASIQAEEQGAAKSTSKAARDISIEAHEDSNA 325

Query: 182 -------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPS 227
                        + V+  L+I    QV ++  I EV       +G Q  S    +   S
Sbjct: 326 LVITAQPDMMRSLEDVIRQLDIR-RAQVQVEAIIVEVFEGDGTTVGVQWASEKYGAQQFS 384

Query: 228 KSFAADFGGKFVSE-------------------------------------GGDFSVKGV 250
                  G   V+                                      GG       
Sbjct: 385 NGNVVGIGSLAVAAEQAEDTTTTTVGFDDDGDPYSFDETTEGDYTALASLLGGVNGFLVG 444

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGAT 305
             +  +  VL A+   T    L+ P LT +  + A F  G +           +++    
Sbjct: 445 AVKDGWGAVLQAVSTDTNSNVLSTPHLTTLDNEEAFFIVGQEVPIITGSTTGSNNTNPFQ 504

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           SV   + G+ L  TP +     + L I+ EVS      +   +     R+  TTV +  G
Sbjct: 505 SVERQEIGIKLKVTPQINEGNAVQLLIEQEVSSISGATSVDIL--INKREIKTTVIVDDG 562

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAM 424
           GTIVL GL+ DD+Q+    +P+L  IP LG LF+++  ++ +  + +   P +++  V  
Sbjct: 563 GTIVLGGLIDDDVQESVSKVPILGDIPYLGNLFKSTTTSKSKRNLMVFIRPTIIRDGVTA 622

Query: 425 RDLSRPDDHYSVEDDAKAFFFN 446
            D+SR   +Y   +  K     
Sbjct: 623 SDISRKKYNYIRAEQLKRQSEG 644


>gi|315295914|gb|EFU55227.1| type IV pilus secretin PilQ [Escherichia coli MS 16-3]
          Length = 386

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 129/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  +++          + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNVARQEVEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|300898927|ref|ZP_07117225.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
 gi|300357442|gb|EFJ73312.1| type IV pilus secretin PilQ [Escherichia coli MS 198-1]
          Length = 386

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|262370669|ref|ZP_06063994.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
 gi|262314469|gb|EEY95511.1| type IV pilus biogenesis and competence protein pilQ [Acinetobacter
           johnsonii SH046]
          Length = 390

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 53/243 (21%), Positives = 102/243 (41%), Gaps = 10/243 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKF 238
           ++++LL++A + QV ++  I     D  +++G + S          G     + D G   
Sbjct: 144 RMIDLLDVAVK-QVMVEARIVTASTDFSRELGIKWSAKKLGNSPVWGGDFQPSFDLGVDL 202

Query: 239 VSEGGDFSVKGV--LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            +        G+  +  +     L AL+       L+ P +     Q A    G +  Y+
Sbjct: 203 ATNTAGTFNFGLLKISDYMLNLELSALQADGHGEVLSAPKVLTGDKQKAYILRGTEIPYQ 262

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
              S+T           + L  TP++   G++ + ++ E  +  +G            + 
Sbjct: 263 -TWSATEGLKTEFRAANLKLEVTPSITPDGKVQMALKIE--KDTVGTLTSAGYLINTNEL 319

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V +  G T+VL G+  D  Q   E +P    +P++GALF+N+  +  +TE+ I  TP
Sbjct: 320 ETNVLVDDGETVVLGGIFDDIKQNQYEKVPFFGDLPVVGALFKNNTRSSAQTELLIFVTP 379

Query: 417 FLV 419
            +V
Sbjct: 380 RIV 382


>gi|33151657|ref|NP_873010.1| competence protein E [Haemophilus ducreyi 35000HP]
 gi|33147878|gb|AAP95399.1| competence protein E [Haemophilus ducreyi 35000HP]
          Length = 419

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/441 (16%), Positives = 152/441 (34%), Gaps = 52/441 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            R  F++      S       L       A +++    E  K   +S  ++K   L++  
Sbjct: 1   MRILFSLFFFISLSLLAQPLSLSLKNAPTAEILSYLAEENMKNIVLSDQIDKNTTLRIEN 60

Query: 65  DVQDVLVSDPTKADVVVHSPR---TMYLFG--KNVGQANVILIGHDGKQMLNLDILIERD 119
              D +V   +       S R    +Y  G  K       I  G   K +     L    
Sbjct: 61  SHFDEIV--ESIVRANQLSKRKEKQIYFIGHLKEDKAIEKIDNGDKPKLITQTIKLDYAK 118

Query: 120 IAHLEMTLRRFIADSNI-------RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            + +  +L +   + N+         +  S+++++     +    +  + L +     + 
Sbjct: 119 ASEVIESLTKGKGNGNVLSEQGYLYFDERSNSLIIK---DSPDSMKHILALIKNLDKPT- 174

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------- 224
                                +Q+ ++  I  +    L+++G +  +   S         
Sbjct: 175 ---------------------EQIAIEARIVTISSQDLQELGVRWGMFSPSDDYHKVASS 213

Query: 225 ----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
               G + +   +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 214 LETKGLTTANHLNVNFPVNNATSLALQVARINSRVLDLELTALEQENNVEIIASPRLLTT 273

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   +      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 274 NKKPASIKQGAEIPYVLYNRKDEVKNIEFKEAVLGLQVTPHISADNQILLDLVVTQNSPN 333

Query: 341 -IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   + +   ++ +T V    G TIVL G+ +    + ++ +PLL  IP+L  LF 
Sbjct: 334 LNNTAVNGLITIDKQELNTQVFAKHGETIVLGGIFQHLTAKGEDRVPLLGSIPVLKKLFS 393

Query: 400 NSRFNREETEIFIAATPFLVK 420
           +S     + E+ I  TP+LV+
Sbjct: 394 HSTDKITKRELVIFVTPYLVQ 414


>gi|167855583|ref|ZP_02478343.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
 gi|167853274|gb|EDS24528.1| type II secretory pathway, component HofQ [Haemophilus parasuis
           29755]
          Length = 420

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247
            +Q+ ++  I  +  + L+Q+G +  +   +    K      G    +   + +      
Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232

Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    ++       L ALE    I  +A P L     + AS   G +  Y   S  
Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              T +   +  + L  TP +    +I L +    + P   +N   M +   ++ +T V 
Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              G TIVL G+ +  I + ++ +PLL  IP++  LF  +R    + E+ I  TP++VK
Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410


>gi|301019596|ref|ZP_07183756.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
 gi|300399184|gb|EFJ82722.1| type IV pilus secretin PilQ [Escherichia coli MS 69-1]
          Length = 386

 Score =  183 bits (465), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|152991308|ref|YP_001357030.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151423169|dbj|BAF70673.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 495

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 55/316 (17%), Positives = 117/316 (37%), Gaps = 40/316 (12%)

Query: 121 AHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             L+  L+ F+    S++ +   +  V + G                         +   
Sbjct: 188 DSLKQQLQTFLHDPHSDVFLNKDASIVTVTGT------------------------KEEL 223

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              ++ +  L      QV ++  I EV+ +  + +G   S        S+S      G  
Sbjct: 224 DKVERFLQKLQDRMHKQVMIEAKIIEVQYNDDQTVGIDWSKFSLDVTGSRSAQQSRSGST 283

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                      +   FS + +L  L++   ++ L+ P +  ++ Q A    G Q  Y+  
Sbjct: 284 KLNNFGTPDYFIGYNFSMQGLLDFLKKYGKVKILSNPKVMTLNNQPAIINVGDQLSYRYE 343

Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVN 344
           +          +    S+     G+ L+  P +     I ++I    S           N
Sbjct: 344 NGVVITGGNAVANQTYSIGQTFVGISLYVIPEITENSDIIMKINPVTSALKNENIGYETN 403

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P  R+++  + V++  G  I++ GL+  +  +    +P+L  IPI+G  F++   +
Sbjct: 404 RTLPPDIRLKQVTSIVKVKDGQKILIGGLISKNYSKQFNKVPVLGDIPIIGYAFKSKNNS 463

Query: 405 REETEIFIAATPFLVK 420
            +++E+F+   P +VK
Sbjct: 464 VKKSELFVLIIPKIVK 479


>gi|224368216|ref|YP_002602379.1| PilQ [Desulfobacterium autotrophicum HRM2]
 gi|223690932|gb|ACN14215.1| PilQ [Desulfobacterium autotrophicum HRM2]
          Length = 727

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 98/228 (42%), Gaps = 3/228 (1%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ +   + EV ++  K +G   S++ +++        ++        G    +    
Sbjct: 497 TPQIMISARVVEVNKNFSKSLGIDWSVSKNNANSGFDVIMNYPVASDGSLGFDFSRIFGT 556

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             + +  L A E    ++ ++ P +  +  + A     G          +G +SV   + 
Sbjct: 557 ELALDATLSASEIKGDVKIISSPKILTLDNKKAKIK-QGLEYAYLERDDSGGSSVLFKNI 615

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            ++L  TP V    RIG+ +    ++    V+   +PS    +A+T + +  G TIV+ G
Sbjct: 616 DLLLEVTPHVTPDNRIGMSVLITKNDLASVVDG--VPSLSTNEAETELLVNDGNTIVIGG 673

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++K+     + G P LS IP+LG LF +      + E+ I  TP +V+
Sbjct: 674 IVKNTSSTSETGFPGLSNIPLLGKLFGSDSTEDTKNELLIFITPTIVQ 721


>gi|330889718|gb|EGH22379.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 680

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 363 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 421

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 422 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 481

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 482 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 541

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 542 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 601

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +  
Sbjct: 602 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 659

Query: 432 DHYSV 436
           D Y  
Sbjct: 660 DDYRQ 664


>gi|195934879|ref|ZP_03080261.1| outer membrane porin HofQ [Escherichia coli O157:H7 str. EC4024]
 gi|320191599|gb|EFW66249.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. EC1212]
 gi|326337648|gb|EGD61483.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1044]
 gi|326344601|gb|EGD68350.1| Type IV pilus biogenesis protein PilQ [Escherichia coli O157:H7
           str. 1125]
          Length = 386

 Score =  183 bits (464), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 71/319 (22%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSIAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|308047936|ref|YP_003911502.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
 gi|307630126|gb|ADN74428.1| general secretion pathway protein D [Ferrimonas balearica DSM 9799]
          Length = 723

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 68/383 (17%), Positives = 128/383 (33%), Gaps = 64/383 (16%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-------VEMVSDTVVLHGMV 151
           V+        +++ D    +  A L   L + + +S           +      VL G  
Sbjct: 240 VVADERTNSVVISGDERARQRAAALVRELDQEMQNSGNTKVVYLKYAKAEDLQEVLSGFA 299

Query: 152 RTIQDSQ--------------RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            ++Q  +                +  +++             + + V+  L+I    QV 
Sbjct: 300 ESLQTEEGGSAQTQRRRNNEITIMAHADSNALVINAQPDQIQTLESVIRQLDIR-RAQVL 358

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------------------- 235
           ++  I E+        G Q            +F    G                      
Sbjct: 359 VEAIIVEIAEGDEVGFGVQWGSADGGLIQYNTFGTTIGEVGAGIWDARDVPGTEVCSPEG 418

Query: 236 -------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +      +   +    F  ++ A+   +    LA P++T +  
Sbjct: 419 VCTTNPDQDGDITTLAAALSKVNGMAWGVAMGDFGALIQAVAADSNSNVLATPSITTLDN 478

Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           Q ASF  G +    T      ++    T+V   + G+ L  TP +     + L I+ EVS
Sbjct: 479 QEASFIVGDEVPVITGSTSGSNNDNPFTTVERKEVGIKLKVTPQINEGNAVQLEIEQEVS 538

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                       ++  R   TTV   SG T+VL GLL +D+Q+    +PLL  IP++G L
Sbjct: 539 NVNGRTAVD--VTFGKRTLTTTVLADSGETVVLGGLLNEDVQESVSKVPLLGDIPVIGHL 596

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F ++   + +  + I   P +++
Sbjct: 597 FSSTSSKKTKRNLMIFIKPTIIR 619


>gi|300974788|ref|ZP_07172732.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|301050407|ref|ZP_07197293.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300297875|gb|EFJ54260.1| type IV pilus secretin PilQ [Escherichia coli MS 185-1]
 gi|300410491|gb|EFJ94029.1| type IV pilus secretin PilQ [Escherichia coli MS 45-1]
 gi|315291661|gb|EFU51017.1| type IV pilus secretin PilQ [Escherichia coli MS 153-1]
          Length = 386

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|300987128|ref|ZP_07178014.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|300306272|gb|EFJ60792.1| type IV pilus secretin PilQ [Escherichia coli MS 200-1]
 gi|323189024|gb|EFZ74308.1| transport protein hofQ [Escherichia coli RN587/1]
 gi|324009420|gb|EGB78639.1| type IV pilus secretin PilQ [Escherichia coli MS 57-2]
 gi|324014615|gb|EGB83834.1| type IV pilus secretin PilQ [Escherichia coli MS 60-1]
 gi|330909424|gb|EGH37938.1| type 4 pilus biogenesis protein PilQ [Escherichia coli AA86]
          Length = 386

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|289625539|ref|ZP_06458493.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330866897|gb|EGH01606.1| general secretion pathway protein D [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 775

 Score =  183 bits (464), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 458 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 516

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 517 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 576

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 577 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 636

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 637 ILDVVPRINPGGLVYMDIQQQVSTADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 696

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +  
Sbjct: 697 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 754

Query: 432 DHYSV 436
           D Y  
Sbjct: 755 DDYRQ 759


>gi|238792812|ref|ZP_04636443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
 gi|238727920|gb|EEQ19443.1| General secretion pathway protein D [Yersinia intermedia ATCC
           29909]
          Length = 658

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 102/257 (39%), Gaps = 10/257 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--V 239
             V+  L++    QV ++  I E +      +G Q     S        +A+       +
Sbjct: 348 DLVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIQWENKFSGGVNFIPNSANTRNNSERM 406

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +  AL   +    LA P++  +    A F  G +    T +
Sbjct: 407 PPMAIAGLTAGFYKGNWSGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTST 466

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       S++  + GV+L   P +     + L I+ EVS      +A        + 
Sbjct: 467 QTTSTDRVYNSISRKNVGVMLKVKPQINKGDSVLLEIRQEVSSIADSSDANANNLGSIFN 526

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   I ++   IP+L  IP +G LFR  +   E++ + +
Sbjct: 527 KRVVNNAVLVKSGETVVVGGLLDKKIYKIVNKIPILGDIPFIGGLFRQKKEKVEKSNLIL 586

Query: 413 AATPFLVKPVAMRDLSR 429
              P +++  +  +L  
Sbjct: 587 FIKPTILRETSDYNLVT 603


>gi|206901782|ref|YP_002250755.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
 gi|206740885|gb|ACI19943.1| bacterial type II and III secretion system protein [Dictyoglomus
            thermophilum H-6-12]
          Length = 1256

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 72/324 (22%), Positives = 137/324 (42%), Gaps = 38/324 (11%)

Query: 97   ANVILIGHDGKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
               ++   +G  ++  +  ++   +  L+  +     D N   +  S  +++ G      
Sbjct: 969  TTAVVATKEGAPIVTKEYKLKYISLDTLKSVVSGIAKDVNFYYDQTSGLLLVQG------ 1022

Query: 156  DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             + +   +                  + ++  L+     QV + V + EV R+ +K IG 
Sbjct: 1023 PADQVSSV------------------ESMIAKLDKPTP-QVKIDVQVIEVSRENIKDIGI 1063

Query: 216  QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            +      S+G   +    +    +S         +++       + ALE     + LA+P
Sbjct: 1064 EWGTGSISTGLQITANVGWQDLRIS---------IINPGQISANIKALESQNKAKILAQP 1114

Query: 276  TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            ++T +SG+S +    G  +      + G   V+  D G++L+ TPTV + G I   +  +
Sbjct: 1115 SMTTVSGKS-TRIMIGDRVPLISYDAQGNRQVSFVDVGIILNVTPTVNADGTITANLNPQ 1173

Query: 336  VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            VS     V   D+P    R+A T V L +G T+ L GLL+ +  +    +PLL  IPILG
Sbjct: 1174 VSTIQGYVQ--DVPIISTREAQTIVNLKNGETLALGGLLRQEEIESMSKVPLLGDIPILG 1231

Query: 396  ALFRNSRFNREETEIFIAATPFLV 419
             LF+  +  + E E+ I  TP ++
Sbjct: 1232 ELFKARKIQKVERELIILITPKII 1255


>gi|219872291|ref|YP_002476666.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
 gi|219692495|gb|ACL33718.1| competence protein E/type II secretory pathway, component HofQ
           [Haemophilus parasuis SH0165]
          Length = 420

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 96/239 (40%), Gaps = 12/239 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV----- 247
            +Q+ ++  I  +  + L+Q+G +  +   +    K      G    +   + +      
Sbjct: 173 TEQIAIEARIVTISSEHLQQLGVRWGLFSPNENHYKLAGNLEGNGLTTNNLNVNFPVNPS 232

Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    ++       L ALE    I  +A P L     + AS   G +  Y   S  
Sbjct: 233 ASVALQIAAINSRVLHLELTALESENNIEIIASPRLLTTDKKPASIKQGTEIPYAMYSKK 292

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              T +   +  + L  TP +    +I L +    + P   +N   M +   ++ +T V 
Sbjct: 293 KEITDIEFREAVLGLEVTPHISKQNQILLDLAISQNSPNNQMNNM-MATIDKQEINTQVL 351

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              G TIVL G+ +  I + ++ +PLL  IP++  LF  +R    + E+ I  TP++VK
Sbjct: 352 AKHGETIVLGGIFQHLIAKGEDKVPLLGSIPVIKRLFSQNRDKISKRELVIFVTPYIVK 410


>gi|293393378|ref|ZP_06637690.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
 gi|291424115|gb|EFE97332.1| type IV pilus secretin PilQ [Serratia odorifera DSM 4582]
          Length = 411

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 120/292 (41%), Gaps = 25/292 (8%)

Query: 154 IQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGE------------------ 193
                 A  ++ +  +Q G   ++  +    K  N L I                     
Sbjct: 119 ALQHADAETIAASLQAQRGTLLSERGSVVVDKRTNALMIRDAAPALSALQGWLRELDKPL 178

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGV 250
           +QV L   I  + R+ L+++G +  +T       +    +F        S          
Sbjct: 179 EQVQLAAHIVTISREDLRELGVRWGLTADQRAAKRLRIDNFSVGLPLERSAINVGFHLAR 238

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +     +  L ALE+  A+  +A P L   + Q+AS   G +  Y+  S ++GAT++   
Sbjct: 239 VSGRLLDLELMALEQENAVEIIASPRLLTANQQTASIKQGTEIPYEVSSGASGATAIQFR 298

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G I L +    + P   +   +G+  +   ++  T V + +G T+
Sbjct: 299 EAVLGMEVTPRILPNGLITLTLHISQNMPGRAVRQGSGEALAIDKQEIKTQVTVKNGETV 358

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL G+ +       + +P L  +P+LG+LF+ S    ++ E+ I  TP L+K
Sbjct: 359 VLGGIFQRQRSHGADKVPGLGDVPLLGSLFKQSSKQHKKRELVIFITPTLIK 410


>gi|320330838|gb|EFW86812.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 701

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|241668668|ref|ZP_04756246.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254877201|ref|ZP_05249911.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254843222|gb|EET21636.1| type IV pili secretin component [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 587

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 70/411 (17%), Positives = 148/411 (36%), Gaps = 29/411 (7%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P         +      + +   +++ ++  +   V +D+++V    P     ++V+ S 
Sbjct: 182 PITISFKDTPVQTVLQVLSEFAGLNLVVSSSVRGNVSIDLKNV----PWNEVMNIVLVSK 237

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 238 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 294

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S      + T        +      + V+N ++I   DQV ++ 
Sbjct: 295 ITSMAKQNGGIMSPRGS--ITSDARTNTLIVTDTEEKIPLIRNVINEIDIPN-DQVLIEA 351

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DR 253
            I EV+R    ++GF + ++  S                 E     V             
Sbjct: 352 RIVEVQRTSGLELGFNYGVSHPSGLNVGLDTFRNPTPKPGETDTSVVASTARLAYTLAGG 411

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              E  + ALE  +    ++ P L   + ++A F   G+ +    ++++GA SV   +  
Sbjct: 412 LQLEMEIRALENESLANLVSSPHLVVSNNETA-FIKDGKDVPYQQATASGAASVAFQEAV 470

Query: 314 VVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           + L  TP +   G I +     +     S           P    R+  T V +    T+
Sbjct: 471 LELQVTPQIAPDGNIVMEVLVTKNSVGASSGKTSTGEDLPPIINKREVTTKVMVKDSETV 530

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+ G+   +  + +  IP L  IP LG LF  ++    + E+ I  TP ++
Sbjct: 531 VIGGIYTKEQTETRNKIPFLGDIPYLGYLFSYTKIEDRDAELLIFITPKII 581


>gi|332750832|gb|EGJ81239.1| transport protein hofQ [Shigella flexneri 2747-71]
 gi|332763627|gb|EGJ93866.1| protein involved in utilization of DNA as a carbon source [Shigella
           flexneri 2930-71]
 gi|332997370|gb|EGK16986.1| transport protein hofQ [Shigella flexneri K-218]
 gi|333012492|gb|EGK31873.1| transport protein hofQ [Shigella flexneri K-304]
          Length = 386

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 126/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS     +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQESEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|312968303|ref|ZP_07782513.1| transport protein hofQ [Escherichia coli 2362-75]
 gi|312287128|gb|EFR15038.1| transport protein hofQ [Escherichia coli 2362-75]
          Length = 386

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|114321548|ref|YP_743231.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114227942|gb|ABI57741.1| general secretion pathway protein D [Alkalilimnicola ehrlichii
           MLHE-1]
          Length = 673

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 81/457 (17%), Positives = 159/457 (34%), Gaps = 40/457 (8%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +   L    P    L     AN+ +I+ +   + + + +   +++    ++ V   +   
Sbjct: 148 LVPVLRPLVPQDGHLAAYSPANSLIISDTAANVDRLEVLIGRVDRDTEGEIEVIQLEHAA 207

Query: 72  SDPTKADVVVHSP-----RTMYLFGKNVGQANVILIGHDGKQMLN---LDILIERDIAHL 123
           +      V          R + +       + +I      + ++      I  E      
Sbjct: 208 ASEVVRMVRELEDEEREGRRLRVVADERANSVMIAGDRQRRLLVRALIGQIDSEVAAEGT 267

Query: 124 EMTLRRFIADSN---IRVEMVSDTVVLH-GMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
              +    AD+      +E +  +++   G              S T             
Sbjct: 268 AQVVYLRFADAEELVPVLEGIGTSLLESRGGNDAGGQGLDIRAHSSTNALVMNGPADVLR 327

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------------ 227
           S + V+N L+I    QV ++  IAEV +D ++++G Q  +     G              
Sbjct: 328 SLRSVLNRLDIR-RAQVLVEAVIAEVSQDRVEELGVQWGVLSEDRGVGLINFGGAAGAGG 386

Query: 228 -----------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                       S  +      V +G    V  +        ++ AL   +A   L+ P+
Sbjct: 387 GIADVIRAAGAISDGSTADLPQVGDGAAIGVGDLRGSTQVAALIRALSGDSASNILSTPS 446

Query: 277 LTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           L  +  + A    G    + T      S    +S+   D GV L   P +     + L I
Sbjct: 447 LMTMDNEEAEIVVGQNVPFITGRAIEDSGQAFSSIQRQDVGVQLRIRPQINEGDTLKLEI 506

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS    G+         +R   T+V + +G  +VL GL+ D ++   + +PLL  +P
Sbjct: 507 EQEVSSVSGGIQGAADLVTDLRSVRTSVMVENGQMVVLGGLIDDQLRTRSQAVPLLGNLP 566

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            LG LFR  R   E+  + +   P +++  A ++ + 
Sbjct: 567 GLGRLFRYDRSQVEKRNLMVFLRPVIIRDTAAQERAT 603


>gi|251790891|ref|YP_003005612.1| general secretion pathway protein D [Dickeya zeae Ech1591]
 gi|247539512|gb|ACT08133.1| general secretion pathway protein D [Dickeya zeae Ech1591]
          Length = 696

 Score =  183 bits (463), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 97/260 (37%), Gaps = 12/260 (4%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                A   +  ++  L++   +QV ++  + EV++     +G              S  
Sbjct: 385 SAPPDAMRQAASIIRQLDVR-HEQVLVEAIVVEVQQAEGLNLGIAWGNRNYGGSNFNSVN 443

Query: 232 ADFGGKFVSEGGDF-----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
              G    +   +       +       ++ T+ +ALE       LA P++  +    A 
Sbjct: 444 VGNGFNQPNPLVNALKGTEGLVAGFYHGNWGTLFNALESNKRNNILATPSVVTLDNHRAE 503

Query: 287 FTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           F  G      T S +T       +V     G+     P +   G I L I  E+S     
Sbjct: 504 FNVGQDVPILTGSQTTNNDNIFNTVQRRTIGIKFSILPRINQSGTILLNISQEISSLSDT 563

Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                     + +R  +  V++    T+V+ GLL D+ ++    +PLL  IP LG LFR 
Sbjct: 564 AQVNSNLGSVFNIRTVNNVVQVQDDETVVIGGLLDDEKKETTNKVPLLGDIPWLGNLFRY 623

Query: 401 SRFNREETEIFIAATPFLVK 420
           +  N ++  + +   P +++
Sbjct: 624 TSQNNDKRNLMLFIRPRIIR 643


>gi|330872058|gb|EGH06207.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 681

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 325 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 381

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 382 TSAESKADERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 440

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 441 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 500

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 501 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 559

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 560 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 619

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 620 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 671


>gi|306816271|ref|ZP_07450409.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|222035093|emb|CAP77838.1| Protein transport protein hofQ [Escherichia coli LF82]
 gi|305850667|gb|EFM51124.1| outer membrane porin HofQ [Escherichia coli NC101]
 gi|307628452|gb|ADN72756.1| outer membrane porin HofQ [Escherichia coli UM146]
 gi|315286025|gb|EFU45463.1| type IV pilus secretin PilQ [Escherichia coli MS 110-3]
          Length = 386

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ ++ +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVSQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|320322061|gb|EFW78157.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 701

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPSDEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|238783680|ref|ZP_04627700.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
 gi|238715393|gb|EEQ07385.1| General secretion pathway protein D [Yersinia bercovieri ATCC
           43970]
          Length = 661

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 65/345 (18%), Positives = 133/345 (38%), Gaps = 27/345 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL+G+ +  +  ++A  +S++         Y  +++             ++V+  L++  
Sbjct: 303 VLNGISQGQRSDKKASVVSKSQSGNIAIKAYDQTNALVITADLRMMKELEQVIEKLDVR- 361

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--VSEGGDFSVKGV 250
             QV ++  I E +      +G Q +   S                          +   
Sbjct: 362 RAQVLVEAIIVETQNAEGLNLGIQWANKYSGGINLLPRPGHARSHSEQPMPMVIAGLTAG 421

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATS 306
             + ++  +  AL   +    LA P++  +    A F  G +    T + +T       S
Sbjct: 422 FYKGNWNGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNS 481

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELP 363
           ++    G++L   P +     + L I+ EVS      N         +  R  +  V + 
Sbjct: 482 ISRQSVGIMLKVKPQINKGDSVLLEIRQEVSSVADSSNTNTNNLGFIFNKRAINNAVLVK 541

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG T+V+ GLL + + +    IPLL  IP +G LFR S+   +++ + +   P +++   
Sbjct: 542 SGETVVVGGLLDEKLSKTVNKIPLLGDIPFIGGLFRQSKEKVDKSNLILFIKPTILRETN 601

Query: 424 MRDLSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
              +   D H  Y   +  +    N  N++Y    A+E++  +Y 
Sbjct: 602 DYSVVTIDKHTKYKDSNSQENTINN--NRLYHDLLATEIKSDSYN 644


>gi|197117937|ref|YP_002138364.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
 gi|197087297|gb|ACH38568.1| type IV pilus secretin lipoprotein PilQ [Geobacter bemidjiensis
           Bem]
          Length = 946

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 68/442 (15%), Positives = 157/442 (35%), Gaps = 61/442 (13%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIG----KGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
                   P + ++   + +           G+++++  +   + ++   + +V   +  
Sbjct: 523 VAEELTPTPARTSDDMAVQLPSDRPAKKVYTGRRVTLEFSDADVRKIFQLIAEVSNLNFL 582

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--- 132
            AD V              G  ++ L+     Q L++ +  +      E  + +      
Sbjct: 583 IADDVT-------------GTISIKLVNVPWDQALDVILDAKGLAMVREGNIVQIKPRSK 629

Query: 133 -----DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQYANSSSKKVM 185
                D  +  +  ++ ++    +    +     +++  F  L         +  + +V+
Sbjct: 630 MQNQADEELAAKKAAERLMELKTMVFEVNYASVNDVAMQFGMLKSDRGVITKDERTSRVI 689

Query: 186 --------NLLNI------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   N +        A E QV ++  I E      + +G Q  ++      S +  
Sbjct: 690 VKDIQTALNDMKALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASVAGI 749

Query: 232 ADFGGKFVS--------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                 F                 G   S   +      +  L A      ++ ++ P +
Sbjct: 750 NSVDTGFGGVVSAAGPGSSGAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKV 809

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             ++ ++A  + G    Y+T S+    T     +  + L  TP + + G + ++I+   +
Sbjct: 810 VTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNN 867

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P      G  P    ++A T + + +G T V+ G+  D   +   G+P LS IP+LG L
Sbjct: 868 SP----GTGSPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFLSDIPLLGWL 923

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F+++   + +TE+ I  TP +V
Sbjct: 924 FKSNSKQKTKTELLIFITPKIV 945


>gi|283788039|ref|YP_003367904.1| T2SS protein D [Citrobacter rodentium ICC168]
 gi|282951493|emb|CBG91192.1| putative T2SS protein D [Citrobacter rodentium ICC168]
          Length = 662

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 109/295 (36%), Gaps = 25/295 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              +  ++       +T       NQ      + V+  L+I    QV ++  I EV+   
Sbjct: 302 SAPSSNNAISITADEQTNSLVITANQSQLQQLEPVIEKLDIR-RAQVLVEAIIVEVQDGK 360

Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDF-------SVKGV 250
              +G Q +     +    +                  G   S+   +        +   
Sbjct: 361 GLNLGVQWANKNIGATQFTNTGLPIFNAAQGVKEFKKQGGITSDNPAYDLFSKYRGMAAG 420

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATS 306
                +  +L AL   +    L+ P++  +  + ASF  G      + S +T      ++
Sbjct: 421 FFSGDWAVLLTALSSDSKNDILSTPSIVTLDNKEASFNVGQDVPVLSGSQTTSGDNIYST 480

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSG 365
           V     G  L  TP +     + + I+ EVS      ++  + P++  R     V + SG
Sbjct: 481 VERKTVGTKLKVTPQINEGDSVLMEIEQEVSSVDSTASSSSLGPTFNTRTIQNAVLVKSG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GL+ D  ++    +PLL  IP +G LFR +   + +  + +   P +++
Sbjct: 541 ETVVLGGLMDDSSKEEVSKVPLLGDIPFIGQLFRYTNHEKSKRNLMVFIRPTIIR 595


>gi|239787173|emb|CAR94716.1| wmpD protein [Pseudoalteromonas ruthenica]
          Length = 688

 Score =  183 bits (463), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 103/286 (36%), Gaps = 47/286 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +KV+  L+I    QV ++  I EV        G Q            +      G     
Sbjct: 342 EKVIERLDIR-RAQVLVEAIIVEVSEGDGVNFGLQWISEQGGMLQFNNGTTVPVGSLAVA 400

Query: 242 ---------------------------------------GGDFSVKGVLDRFSFETVLHA 262
                                                  GG   +   + +  +  ++ A
Sbjct: 401 AEQARDKTITDNVVGSESGVVTPISRTEEGDLGPLASLLGGINGLAMGIVKNDWGAIVQA 460

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLH 317
           +   T    LA P++T +  + AS   G +    T SS+         +V   + GV L 
Sbjct: 461 VSNDTNSNILATPSITTMDNEEASMIVGQEVPIITGSSTGSNNENPFQTVDRQEVGVKLK 520

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +     + L I+ EVS            S   R   TTV    GG +VL GL+ +D
Sbjct: 521 VTPQINDGSAVQLTIEQEVSNVAGSTAVD--ISINKRAITTTVLADDGGMVVLGGLIDED 578

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +Q+    +PLL  IP+LG LF+++  ++ +  + +   P +++ + 
Sbjct: 579 VQESVSKVPLLGDIPVLGHLFKSTSTSKRKRNLIVFIRPTILRDIE 624


>gi|332085619|gb|EGI90783.1| transport protein hofQ [Shigella dysenteriae 155-74]
          Length = 386

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+VL G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLVLGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|327251020|gb|EGE62713.1| transport protein hofQ [Escherichia coli STEC_7v]
          Length = 386

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + +I ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKAALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|257483507|ref|ZP_05637548.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|330984730|gb|EGH82833.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M301315]
 gi|331009590|gb|EGH89646.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 701

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|220933412|ref|YP_002512311.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994722|gb|ACL71324.1| general secretion pathway protein D [Thioalkalivibrio sp. HL-EbGR7]
          Length = 655

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 82/460 (17%), Positives = 155/460 (33%), Gaps = 49/460 (10%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
              +   L    P    L    E+N  +++ S     +  ++   ++      + +    
Sbjct: 136 AAQLVPILRPLVPQSGHLVASAESNVLIVSDSAANAERIAELVARIDLDGREDLEMIPLR 195

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
              +      +           G+  GQ  ++        +L  D      I  +   L 
Sbjct: 196 HASAAEVVRVLTSLHGGGE---GRR-GQMQMVADERTNSILLGGDPKRRVAIRAMISHLD 251

Query: 129 RFIADSNIRV------EMVSDTVVLHGMVRTIQDSQ------------RAVELSETFLSQ 170
             I   N +V        +    VL G+V+ +                +A E +   +  
Sbjct: 252 TRIEGGNTQVVYLRYANAMDMAEVLKGLVQGMDVPGADGREGRGGINIQAHESTNALVLS 311

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
              +   +  +  V+N L++    QV ++  IAEV  D + ++G Q  +   +SG     
Sbjct: 312 GPPDAVRDLRA--VINQLDVR-RAQVLVEAVIAEVSYDKITELGVQWGVGNPNSGVGVIN 368

Query: 231 AADFGGKFVSEGGD--------------------FSVKGVLDRFSFETVLHALERATAIR 270
               G   +   G                         G     +   ++ AL   ++  
Sbjct: 369 FNRSGSGIIGVAGGIDAFLRGAVATPPNLGDGAFLGGIGTSGSTTIAALVRALAGDSSSN 428

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            L+ P+L  +  + A    G    +        S     ++   D GV L   P +    
Sbjct: 429 ILSTPSLMTMDNEEAEIVVGQNVPFIAGRSIEQSGQAFDTIQRQDVGVKLRIKPQINEGN 488

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L I+ EVS+   G  A        R   T V +  G  +VL GL+ D + Q ++ +P
Sbjct: 489 SIRLEIEQEVSQVAAGATAAADLVTNKRSLRTIVMVDDGEMVVLGGLIDDVLVQTQDRVP 548

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            L  IP +G LFR     +E+  + +   P +V+  A+++
Sbjct: 549 GLGSIPGVGRLFRYDTARKEKRNLMVFLHPVIVRDSAVQE 588


>gi|260770770|ref|ZP_05879699.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|260614007|gb|EEX39197.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio furnissii CIP 102972]
 gi|315178810|gb|ADT85724.1| general secretion pathway protein D [Vibrio furnissii NCTC 11218]
          Length = 675

 Score =  182 bits (462), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 54/320 (16%), Positives = 113/320 (35%), Gaps = 49/320 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIA 203
            G   +   +QR   +       +     A          V+  L+I    QV ++  I 
Sbjct: 296 TGQKSSSGAAQRNEVMIAAHADTNSLVITAPQDIMNAILDVVAQLDIR-RAQVLIEALIV 354

Query: 204 EVRRDILKQIGFQHSI--------------------------------------TGSSSG 225
           E+       +G Q                                         +G+   
Sbjct: 355 EMSEADGINLGVQWGSLESGSVIQYSNSGASIGSVMVGLEEAKDQTTTEYYYDSSGNRRP 414

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            + + + D+     +  G       +    +  ++ A+   +    L+ P++T +    A
Sbjct: 415 YTSTESGDYSSLASALSGINGAAVSVLMGDWTALISAVSSNSNTNILSSPSITVMDNGEA 474

Query: 286 SFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +         + ++     +V   + G+ L   P +     + L I+ EVS  +
Sbjct: 475 SFIVGEEVPVITGSTSSSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLAIEQEVSNVL 534

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IPI+G LF +
Sbjct: 535 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERTAESESKVPLLGDIPIIGHLFSS 593

Query: 401 SRFNREETEIFIAATPFLVK 420
           +    E+  + +   P +++
Sbjct: 594 TSTQVEKKNLMVFIKPTIIR 613


>gi|330807111|ref|YP_004351573.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327375219|gb|AEA66569.1| Type IV fimbriae biogenesis protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 696

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 103/255 (40%), Gaps = 21/255 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           +++  L+I    QV ++  I E   D  K +G +   +  + G   S     G       
Sbjct: 434 RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWSSSGVTTGDSTTVGT 492

Query: 236 ------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                                  +  + D    +  L A+E+      +++P +     +
Sbjct: 493 PGSTSTNQPFVDLGASGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKE 552

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +A    G +  Y+   SS+GATSV+  +  + L  TP +    RI + ++    EP    
Sbjct: 553 TAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLN 611

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR    
Sbjct: 612 KVNDVPPIKKNEVNAKVLVNDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVV 671

Query: 404 NREETEIFIAATPFL 418
           +  ++E+ +  TP +
Sbjct: 672 SDSKSELLVFLTPRI 686


>gi|110632479|ref|YP_672687.1| Flp pilus assembly protein secretin CpaC-like [Mesorhizobium sp.
           BNC1]
 gi|110283463|gb|ABG61522.1| Flp pilus assembly protein secretin CpaC-like protein
           [Chelativorans sp. BNC1]
          Length = 473

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/446 (21%), Positives = 172/446 (38%), Gaps = 55/446 (12%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             +      G+++ I + K + L    + + + V+DPT AD+        +++GK+ G+ 
Sbjct: 73  TWAQASPAYGQRLIIEIGKGLQLSGTENAESLFVADPTIADIKESPGEAHFIYGKSAGET 132

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
            V  +   G+ +   D+++  ++  ++  L +    + I +     +V   G V   Q  
Sbjct: 133 TVTGVDLGGRTLFQYDMVVIYNLDEMQRMLSQRFPAARITIRSARGSVYATGTVPDQQTY 192

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
             A+E  E  + +S            ++N + +A    + L +   EV RD L+  G   
Sbjct: 193 DAAIESLEKSIPESV-----------LINEIAVAESPIIRLDIKFMEVSRDRLETYGVNW 241

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           S    S+          G                        +  L        L++ TL
Sbjct: 242 SALSPSNHYRTGDIRGRG------------------HDVNKFMKLLLDNGVATILSDTTL 283

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           T I  + ASF +G +    T S + GA S  V     G  + FTP +L  G++ L I+ E
Sbjct: 284 TTIGRKKASFMAGEEIAIPTHSVNNGAASFGVDYKFVGFNIGFTPQLLPGGKVSLAIEAE 343

Query: 336 VSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP-----LL 388
           +SEP   V  ++G +P    RK +T V+L SG + +LAGL + D     +  P     ++
Sbjct: 344 ISEPRQTVQFSSGPVPYVAARKLNTNVDLHSGESFILAGLSRMDTTGAHDQ-PRRNWGVV 402

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS-VEDDAKAFFFNR 447
            +  +L +L  +   +    +I +  TP+        D     D       + +    N+
Sbjct: 403 GE--VLRSLAGHGSVSAHNRDIAVVVTPY----FGASDKPSAADITGLQRSNIEFILSNK 456

Query: 448 VNKIYGPKEASEVEGQNYKGAIGFIY 473
                    +         G  GF+Y
Sbjct: 457 ---------SKPFSSARIYGPAGFLY 473


>gi|300822816|ref|ZP_07102952.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|300524582|gb|EFK45651.1| type IV pilus secretin PilQ [Escherichia coli MS 119-7]
 gi|324018703|gb|EGB87922.1| type IV pilus secretin PilQ [Escherichia coli MS 117-3]
 gi|332996422|gb|EGK16049.1| transport protein hofQ [Shigella flexneri VA-6]
 gi|332996664|gb|EGK16289.1| transport protein hofQ [Shigella flexneri K-272]
          Length = 386

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNDNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|300918298|ref|ZP_07134902.1| general secretion pathway protein D [Escherichia coli MS 115-1]
 gi|300414559|gb|EFJ97869.1| general secretion pathway protein D [Escherichia coli MS 115-1]
          Length = 650

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S+ +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSAQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|301021125|ref|ZP_07185165.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|299881655|gb|EFI89866.1| general secretion pathway protein D [Escherichia coli MS 196-1]
          Length = 654

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGLTSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|71733370|ref|YP_272697.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71553923|gb|AAZ33134.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 701

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 +  ++                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEAGNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|71280718|ref|YP_271238.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
 gi|71146458|gb|AAZ26931.1| general secretion pathway protein D [Colwellia psychrerythraea 34H]
          Length = 697

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 135/391 (34%), Gaps = 69/391 (17%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEM-----VSDTV-VLHGMV 151
           ++        +++ ++     +A L   L   + ++ N RV         D V VL G+ 
Sbjct: 231 IVADDRSNSVIVSGEVKARERVARLVKRLDSELESNGNTRVYYLKYSKAEDLVKVLQGVS 290

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS---------------KKVMNLLNIAGEDQV 196
            +I       +       +   +  A+ S+               + V+  L++    QV
Sbjct: 291 DSIASETTTAKTKTRSSKKRDVSIEAHESTNALVITAQPDMLRSLEAVIRQLDVR-RAQV 349

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
            ++  I EV       +G Q            +  A                        
Sbjct: 350 LVEAIIVEVFESDGVSLGVQWYNEAGGFTQFTNGPASISSVAAGVQAAEGEPATKVTTID 409

Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                   G    +   + +  +  ++ A+   T    LA P++
Sbjct: 410 ANGNPVISENPSTDGDYSILAQVLGNVSGMMFGIAKNDWGAIVSAVSSDTNSNILATPSI 469

Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           T +  + A F  G +    T S++         +V   + G+ L  TP V     + L I
Sbjct: 470 TTLDNEEAYFIVGQEVPIITGSATGSNNANPFQTVDRQEVGIKLRVTPQVNEGNAVQLII 529

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS            S   R+  TTV   SG T++L GL+ +D+Q+  + +P+L  IP
Sbjct: 530 EQEVSSVSGTTGVD--ISINKREIKTTVMADSGDTVILGGLIDEDVQESVQKVPILGDIP 587

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           I+G LF+++  +  +  + +     +V+  A
Sbjct: 588 IIGHLFKSTSNSTRKRNLMVFLRATIVRDSA 618


>gi|323179085|gb|EFZ64659.1| transport protein hofQ [Escherichia coli 1180]
          Length = 377

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 57  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 116

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 117 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 175

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 176 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 235

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 236 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 295

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 296 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 355

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 356 DGKEDERRELVVFITPRLV 374


>gi|320180160|gb|EFW55099.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 654

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 108/295 (36%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
               +G Q S     +    +                  G   S    + +    +    
Sbjct: 365 NGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|56459478|ref|YP_154759.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
 gi|56178488|gb|AAV81210.1| Type II secretory pathway [Idiomarina loihiensis L2TR]
          Length = 557

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/259 (23%), Positives = 101/259 (38%), Gaps = 24/259 (9%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSE 241
           + +L    + QV L+  I EV  +   Q G   S   S     G   +          + 
Sbjct: 274 ITVLESRLQRQVILEARIIEVTLNDGYQQGINWSDIYSGNAGFGVDFNGVTPSNATSAAI 333

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297
           GG F +    D  +F  ++  L+    ++ L+ P ++A + Q A    G    + T    
Sbjct: 334 GGLFGLTYTDDGNNFSGMIEMLQTQGTVQVLSNPRVSASNNQKAVIKIGEDEYFVTDVTS 393

Query: 298 --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
                    SSS      T    G+ L  TP +   G + L +   V E         + 
Sbjct: 394 RTVLNTGGASSSDSDIEFTPFFSGISLDVTPQISDDGEVILHVHPSVVETSEQEKVITVS 453

Query: 350 S---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                       +R++DT V+  +G  +VL GL++    +    +PLL  IP+LG LF N
Sbjct: 454 GEESVLPLARSNIRESDTIVKARNGEIVVLGGLMQTTNSEEVGKVPLLGDIPLLGELFTN 513

Query: 401 SRFNREETEIFIAATPFLV 419
            R  +E+ E+ I   P +V
Sbjct: 514 RRNRQEKKELVILLKPTVV 532


>gi|322515010|ref|ZP_08068020.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
 gi|322118999|gb|EFX91171.1| type IV pilus secretin PilQ [Actinobacillus ureae ATCC 25976]
          Length = 431

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 44/248 (17%), Positives = 100/248 (40%), Gaps = 13/248 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------DFGGKF 238
              +Q+ ++  I  +  + L+++G +  +   ++G  K   +            +     
Sbjct: 172 RPTEQIAIEARIVTISSENLQELGVRWGMFSPANGHHKIAGSLEANGLPNTNHLNVNFPV 231

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +          ++    +  L ALE+   +  +A P L   + + AS   G +  Y   
Sbjct: 232 NNAASLALQVAKINGRVLDLELTALEQENNVEIIASPRLLTTNKKPASIKQGTEIPYVLY 291

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357
           +      ++   +  + L  TP + +  +I L +    + P    +    + +   ++ +
Sbjct: 292 NRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPNSTSSTVHGLVTIDKQELN 351

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V    G TIVL G+ +    + ++ +P+L  IP++  LF +S     + E+ I  TP+
Sbjct: 352 TQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVIKKLFSHSSDKISKRELVIFVTPY 411

Query: 418 LVKPVAMR 425
           +VK    +
Sbjct: 412 IVKNGKPQ 419


>gi|77456637|ref|YP_346142.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77380640|gb|ABA72153.1| pilus secretin [Pseudomonas fluorescens Pf0-1]
          Length = 692

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 135/350 (38%), Gaps = 28/350 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++  ++ IA L    R  +    +     +D   L   V
Sbjct: 338 RKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 394

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  +++  L+I    QV ++  I E   
Sbjct: 395 TSAEAKVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVR-QVMIEARIVEANV 453

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG-------------------KFVSEGGDFSVK 248
           D  K +G +   +  + G   +     G                      V+      + 
Sbjct: 454 DYDKSLGVRWGGSIQNKGNWNTSGVSNGSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIA 513

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            + D    +  L A+E+      +++P +     ++A    G +  Y+   SS+GATSV+
Sbjct: 514 FITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQEA-SSSGATSVS 572

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             +  + L  TP +    RI + ++    EP       D+P  +  + +  V +  G TI
Sbjct: 573 FKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETI 632

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           V+ G+  +   ++ + +P L  +P LG LFR    + +++E+ +  TP +
Sbjct: 633 VIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRI 682


>gi|330964738|gb|EGH64998.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. actinidiae str. M302091]
          Length = 701

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 + + +                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDDNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|300937316|ref|ZP_07152157.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
 gi|300457639|gb|EFK21132.1| type IV pilus secretin PilQ [Escherichia coli MS 21-1]
          Length = 386

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSVAWQNDNIARQEAEQTRAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSTLEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|78484984|ref|YP_390909.1| type II and III secretion system protein [Thiomicrospira crunogena
           XCL-2]
 gi|78363270|gb|ABB41235.1| Type II secretion pathway protein D homolog [Thiomicrospira
           crunogena XCL-2]
          Length = 569

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 65/295 (22%), Positives = 122/295 (41%), Gaps = 28/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN---IAGEDQVTLKVTIAEVRRD 208
              +  ++   +     +            ++V N L+        QV ++ T+ EV   
Sbjct: 254 SASKSRKQFQNVVVNREAGMLSVYTTAKKHQQVKNYLDSSLNRTNKQVLIEATVVEVELS 313

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERAT 267
              Q G   S   S+SG S   +    G  +S+  +FS+    +  ++F   +  L++  
Sbjct: 314 DQYQAGVDWSAVNSNSGGSSDISQSLLGTNLSKDPNFSINLSSIGTWNFNIGIKMLQQFG 373

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVV 315
             + L+ P + A++ Q+A        +Y TV              +T  T+V T   G +
Sbjct: 374 DAKVLSSPKIMAMNNQAALLKVVNNEVYFTVEVNRESATASSAGVTTYETTVHTVPVGFM 433

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364
           +H TP  +S   I L I+  +S  V  VN  +           +P  + R+ D+ + L +
Sbjct: 434 MHVTP-FISDDEISLNIRPTLSRIVGYVNDPNPDLARENIESKVPIIQEREMDSVLRLRN 492

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             T ++ GL++D     ++G+P LS +P +G LF        ++E+ I   P +V
Sbjct: 493 RQTAIIGGLIQDTHDNQRQGVPGLSDLPWIGDLFSYRDDTVSKSELIIFIRPIIV 547


>gi|194439979|ref|ZP_03072038.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|307140008|ref|ZP_07499364.1| general secretory pathway component, cryptic [Escherichia coli
           H736]
 gi|331644021|ref|ZP_08345150.1| general secretion pathway protein D [Escherichia coli H736]
 gi|606259|gb|AAA58122.1| ORF_o654 [Escherichia coli str. K-12 substr. MG1655]
 gi|194421087|gb|EDX37115.1| general secretion pathway protein D [Escherichia coli 101-1]
 gi|315137900|dbj|BAJ45059.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|323959524|gb|EGB55177.1| general secretion pathway protein D [Escherichia coli H489]
 gi|323970129|gb|EGB65403.1| general secretion pathway protein D [Escherichia coli TA007]
 gi|331036315|gb|EGI08541.1| general secretion pathway protein D [Escherichia coli H736]
 gi|332345271|gb|AEE58605.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 654

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|254038486|ref|ZP_04872542.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226838992|gb|EEH71015.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
          Length = 654

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|296446147|ref|ZP_06888095.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
 gi|296256341|gb|EFH03420.1| general secretion pathway protein D [Methylosinus trichosporium
           OB3b]
          Length = 785

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 126/304 (41%), Gaps = 22/304 (7%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V      + AV+ ++  +      +       KV+  L++   +QV ++ TIAEV  +  
Sbjct: 458 VSDDGRYKFAVDDAKNAIVVLATPEDYKRVL-KVVETLDV-LPNQVFIEATIAEVTLNDD 515

Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------SFETV 259
              G +  +   +S G              + G +     V   F          + +  
Sbjct: 516 LSFGVRWFLQKNASMGAFSDGDTGTPAANDTLGNNLLGAAVGAAFPGFAYAVRAANTQVT 575

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------THDYG 313
           L AL + T +  ++ P+LT +  + A    G Q    T++ +     VT        D G
Sbjct: 576 LSALNQITNVNIISTPSLTVLDNRQAVLQVGDQVPVTTLTGANTNGGVTTFNSVNYRDTG 635

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAG 372
           V+L  TP +   GR+ L ++ EVS    G +     P+ + R+  T V +    +++L G
Sbjct: 636 VILSITPHINESGRVMLELEQEVSNVASGTSATSTTPTIKQRRVKTQVVVNDSESLMLGG 695

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           L++D   +    IP++  IP+ G  F++   +  +TE+ I  TP +V+ +A  +     D
Sbjct: 696 LIQDSSSRGSSQIPVIGDIPLFGNAFKSKTNSAGKTELLIMITPHVVRTLA--EARDITD 753

Query: 433 HYSV 436
            +  
Sbjct: 754 EFKR 757


>gi|298485082|ref|ZP_07003178.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160334|gb|EFI01359.1| Type IV pilus biogenesis protein PilQ [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 718

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 419 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
           D  KQ+G +   + ++SG  K                                       
Sbjct: 478 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 537

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 656

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708


>gi|330877965|gb|EGH12114.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. morsprunorum str. M302280PT]
          Length = 701

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 135/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++SG                 + + +                    
Sbjct: 461 DYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAGNTSGNLTSNVPFVDLGAAGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|253699252|ref|YP_003020441.1| general secretion pathway protein D [Geobacter sp. M21]
 gi|251774102|gb|ACT16683.1| general secretion pathway protein D [Geobacter sp. M21]
          Length = 635

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 62/255 (24%), Positives = 105/255 (41%), Gaps = 15/255 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V+  L+     QV ++  IAEV  +  K++G Q  +   +S  + S    F       G
Sbjct: 341 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGVQWGVIAGASNGTLSTVGTFDPFGAVAG 399

Query: 243 GDFSVKGV---------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              +++                F   L AL    A+  L+ P +     + A    G   
Sbjct: 400 LSGALQLADTLGITPPDGGVALFPATLKALHSNGALNVLSTPNIMTSDNKEAEIFVGENV 459

Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348
            + + ++ T       S+   D G++L   P +     I L I  E+S     G      
Sbjct: 460 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 519

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R A T+V + +  T+++ GL++D  Q  +  IPLL  IP+LG LF+  R  R++T
Sbjct: 520 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKRTTRDKT 579

Query: 409 EIFIAATPFLVKPVA 423
            + I  TP ++K   
Sbjct: 580 NLLIMLTPRIIKDAR 594


>gi|254360608|ref|ZP_04976757.1| competence protein E [Mannheimia haemolytica PHL213]
 gi|153091148|gb|EDN73153.1| competence protein E [Mannheimia haemolytica PHL213]
          Length = 437

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 100/241 (41%), Gaps = 13/241 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFV 239
            +Q+ ++  I  +  + L+++G +  I    +G              + +   +      
Sbjct: 185 TEQIAIEARIVTISSEHLQELGVRWGIFSRGAGHYKFGGRLEGNGLNNVTNNLNVNFPIT 244

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                      ++    +  L ALE+  ++  +A P L   + + AS   G +  Y   +
Sbjct: 245 GGASAVLQVSSINSRVLDLELSALEQENSVEIIASPRLLTTNKKPASIKQGTEIPYVMYN 304

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + + AT V   +  + L   P + +  +I L +    + P     +  + +   ++ +T 
Sbjct: 305 TKSEATDVEFKEAVLGLEVVPHLSTQNQILLDLIVTQNSPNSQSGSSGLITIDKQELNTQ 364

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G TIVL G+ +   Q+ ++ +P+L  IP +  LF  +R    + E+ I  TP+++
Sbjct: 365 VFAKHGETIVLGGIFQHLTQKGEDKVPILGSIPFIKRLFSQTRDKISKRELVIFVTPYIL 424

Query: 420 K 420
           +
Sbjct: 425 Q 425


>gi|227329158|ref|ZP_03833182.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 424

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 76/437 (17%), Positives = 161/437 (36%), Gaps = 37/437 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+ L R       + L +   + A+         + I      +   +++++ +   +  
Sbjct: 3   MKMLCRVAAWSWLLLLTAPFQASAESSVSMAFEDSPIPRVLQALADHQQLNVVIAPGVTG 62

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            + + + D  +      D+V+            +G+ +V     +G  ++         +
Sbjct: 63  NLSLRLAD--IPWEQALDIVLR-----------MGKLSV---ERNGNVLMVFPADHLESL 106

Query: 121 AHLE----MTLRRFIADSNIRV--------EMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
                       + +   NI V        E+ +      G + + + S    + + T L
Sbjct: 107 QKERDEHAAEQAQKLPLHNISVALQYADATEVAASVQAQRGTLLSTRGSVTVDKRTNTLL 166

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
            +           +  +  L++    QV L   I  +  + L+ +G    +         
Sbjct: 167 IRDTEEALTQL--EPWVKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGDVANKA 223

Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
               +F      +    +       L+    +  L ALE+ + +  +A P L     Q+A
Sbjct: 224 LRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQTA 283

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
           S   G +  Y+  S ++G+TS+   +  + +  TP +L  GRI L ++   + P   +  
Sbjct: 284 SIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQ 343

Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            + G+  +   ++  T V +  G TIVL G+ +   +     +PLL ++P+ G LFRN  
Sbjct: 344 GDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSDRQVPLLGEVPVFGHLFRNHT 403

Query: 403 FNREETEIFIAATPFLV 419
                 E+ I  TP L+
Sbjct: 404 QQHTRRELVIFITPTLI 420


>gi|170018439|ref|YP_001723393.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188495544|ref|ZP_03002814.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|169753367|gb|ACA76066.1| general secretion pathway protein D [Escherichia coli ATCC 8739]
 gi|188490743|gb|EDU65846.1| general secretion pathway protein D [Escherichia coli 53638]
          Length = 654

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|66043674|ref|YP_233515.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
 gi|63254381|gb|AAY35477.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae B728a]
          Length = 718

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/257 (20%), Positives = 105/257 (40%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG  K              
Sbjct: 454 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 512

Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                    +  V +    +  L A+E+      +++P +    
Sbjct: 513 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 572

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 573 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 631

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 632 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 691

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 692 VVSESKSELLVFLTPRI 708


>gi|306816332|ref|ZP_07450470.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
 gi|305850728|gb|EFM51185.1| general secretory pathway component, cryptic [Escherichia coli
           NC101]
          Length = 654

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|270157382|ref|ZP_06186039.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
 gi|269989407|gb|EEZ95661.1| type IV pilus assembly protein PilQ [Legionella longbeachae D-4968]
          Length = 701

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
           K++  L++  + QV ++  I EV +D  + +G +  ++           A+   + V+  
Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480

Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                       ++  + D    +  L ALE       ++ P L
Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A   SG +  Y+  +SS GAT+V      + L   P +    +I + ++    
Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +       +P+   ++  T V + +G TIVL G+ + D  +    +P   ++P++G L
Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F+N++      E+ I  TP ++
Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681


>gi|170719573|ref|YP_001747261.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
 gi|169757576|gb|ACA70892.1| type IV pilus secretin PilQ [Pseudomonas putida W619]
          Length = 422

 Score =  182 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 48/236 (20%), Positives = 97/236 (41%), Gaps = 2/236 (0%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L++    QV ++  I E   D    +G +      S  P+              G
Sbjct: 179 QLVAQLDVPVR-QVEIEARIVEANVDYENSLGVRWGPRLYSEAPALGKDVFVDLGMERAG 237

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                  +      +  L A+E+      +++P +   + ++A    G +  Y+  + S 
Sbjct: 238 SSIGFGVLRGGVLLDLELSAMEKTGNGEIISQPKVVTANNETARILKGTEVPYQETTKS- 296

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           GATSVT  +  + L  TP +   G++ + ++    EP       D+P  R  + +  V +
Sbjct: 297 GATSVTFREASLSLEVTPQITPDGKVIMTVKVTKDEPDFVNALNDVPPIRKNEVNAKVRV 356

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP +
Sbjct: 357 ADGETIVIGGVYSTTQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 412


>gi|224823626|ref|ZP_03696735.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
 gi|224604081|gb|EEG10255.1| type IV pilus secretin PilQ [Lutiella nitroferrum 2002]
          Length = 691

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 98/242 (40%), Gaps = 13/242 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSFAADFGGKFVSE 241
            QV ++  I E   +  +++G + S              G+ +G       +      + 
Sbjct: 447 KQVVIEARIVEATDNFSRELGVKLSYDRIGRLSLGGNIAGAGNGSLTDTLVNLPTNSAAT 506

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G   +V            L AL+  +  + +A P +       A+   G +  Y+  +SS
Sbjct: 507 GTIGAVYKAGASNLIGLELQALQTESQGKIVASPRVLTSDRTEATIEQGQEIPYQEATSS 566

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GATS +     + L   P +     I + IQ           +  +PS + +K +T V 
Sbjct: 567 -GATSTSFKKAVLSLKVKPQITPDSTILMDIQINNDTADFANLSNGVPSLKTKKVNTQVL 625

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +GGT+V+ G+   D  +    +PLL  IP+LGALFR+       TE+ +  TP +V  
Sbjct: 626 VENGGTVVIGGIYTQDENEGLSKVPLLGDIPLLGALFRSKTKKDNRTELLVFLTPRVVSD 685

Query: 422 VA 423
             
Sbjct: 686 FD 687


>gi|323934477|gb|EGB30885.1| general secretion pathway protein D [Escherichia coli E1520]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|289164222|ref|YP_003454360.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
 gi|288857395|emb|CBJ11223.1| type IV pilus (Tfp) assembly protein PilQ [Legionella longbeachae
           NSW150]
          Length = 701

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 106/262 (40%), Gaps = 27/262 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
           K++  L++  + QV ++  I EV +D  + +G +  ++           A+   + V+  
Sbjct: 422 KLIKELDVPVK-QVLIEARIVEVTKDFAQDLGIRWGVSKPQHLSGTLAGANQLAQGVAPA 480

Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                       ++  + D    +  L ALE       ++ P L
Sbjct: 481 DVTPFTDRLNLDLVAAPLTKANPATVGIALAQLGDNILLDLELSALESEGLAELISSPRL 540

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              + Q A   SG +  Y+  +SS GAT+V      + L   P +    +I + ++    
Sbjct: 541 ITANQQPALIDSGQEIPYQQSTSS-GATAVAFKKAVLSLKVIPQITPDNKILMDLKINQD 599

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +       +P+   ++  T V + +G TIVL G+ + D  +    +P   ++P++G L
Sbjct: 600 LALPNQTYNGVPAIATKEIQTNVLVSNGQTIVLGGIYQQDKSKTITRVPFFGQLPVVGNL 659

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F+N++      E+ I  TP ++
Sbjct: 660 FKNTQIGVHNDELLIFITPKII 681


>gi|293412744|ref|ZP_06655412.1| general secretion pathway protein D [Escherichia coli B354]
 gi|291468391|gb|EFF10884.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|157162799|ref|YP_001460117.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068479|gb|ABV07734.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|331674826|ref|ZP_08375583.1| general secretion pathway protein D [Escherichia coli TA280]
 gi|331067735|gb|EGI39133.1| general secretion pathway protein D [Escherichia coli TA280]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/294 (19%), Positives = 101/294 (34%), Gaps = 26/294 (8%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            +          ++   +            K   V+  L+I    QV ++  I EV+   
Sbjct: 307 SSTSAMDNVAITADEQTNSLVITADQPVQEKLATVIARLDIR-RAQVLVEAIIVEVQDGN 365

Query: 210 LKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKGV 250
              +G Q +     +    +                  G   S             +   
Sbjct: 366 GLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAAG 425

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATS 306
                +  +L AL        LA P++  +  + ASF  G      + S +        +
Sbjct: 426 FFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFNT 485

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G 
Sbjct: 486 VERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTGE 545

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 546 TVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|26249920|ref|NP_755960.1| general secretion pathway protein D [Escherichia coli CFT073]
 gi|91212762|ref|YP_542748.1| general secretion pathway protein D [Escherichia coli UTI89]
 gi|117625603|ref|YP_858926.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227883456|ref|ZP_04001261.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|300979896|ref|ZP_07174772.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|301046096|ref|ZP_07193274.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|26110348|gb|AAN82534.1|AE016767_294 Probable general secretion pathway protein D precursor [Escherichia
           coli CFT073]
 gi|91074336|gb|ABE09217.1| probable general secretion pathway protein D [Escherichia coli
           UTI89]
 gi|115514727|gb|ABJ02802.1| putative general secretion pathway protein D precursor [Escherichia
           coli APEC O1]
 gi|227839600|gb|EEJ50066.1| general secretion pathway protein D precursor [Escherichia coli
           83972]
 gi|294492078|gb|ADE90834.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|300301922|gb|EFJ58307.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300409407|gb|EFJ92945.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|307628360|gb|ADN72664.1| general secretory pathway component, cryptic [Escherichia coli
           UM146]
 gi|315284600|gb|EFU44045.1| general secretion pathway protein D [Escherichia coli MS 110-3]
 gi|315292358|gb|EFU51710.1| general secretion pathway protein D [Escherichia coli MS 153-1]
 gi|323950239|gb|EGB46121.1| general secretion pathway protein D [Escherichia coli H252]
 gi|323954552|gb|EGB50335.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|218560386|ref|YP_002393299.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|218367155|emb|CAR04929.1| general secretory pathway component, cryptic [Escherichia coli S88]
 gi|307555412|gb|ADN48187.1| general secretory pathway component [Escherichia coli ABU 83972]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|311277674|ref|YP_003939905.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
 gi|308746869|gb|ADO46621.1| type IV pilus secretin PilQ [Enterobacter cloacae SCF1]
          Length = 412

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 153/396 (38%), Gaps = 45/396 (11%)

Query: 63  PVDVQDVLVSDPTKADVV----VHSPRTMYLFGKNVGQANV------------ILIGHDG 106
            V+   + V +   A V+        R + +  +  G  ++             ++   G
Sbjct: 20  KVNAVTLTVDEVPVAQVLQTLAALDGRNIVIGPEVDGVLSLQLTNIPWMQALQTVLSSAG 79

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             M +   ++       +   +  +       E    T+ L G          A EL++ 
Sbjct: 80  LTMTSQGAVLFIHSHAWQEAKQSRLETEQ---EKRRQTLPLRGQ-SIALRYADAGELAKA 135

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRD 208
              +   +     +  K  N L +  ++                  QV L   I  +   
Sbjct: 136 --GEKLLSPRGAMTVDKRTNRLLVRDDERHLSDIQTWAEEMDKPVGQVELAAHIVTMNEK 193

Query: 209 ILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            L+++G + ++  + S P     +  +       +        G ++    E  L ALE+
Sbjct: 194 SLRELGVKWTLADADSPPGRGKFTTLSSDLSVTDATSRAGFNIGRINGRLLEFELSALEQ 253

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +  +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  
Sbjct: 254 QQQLEIIASPRLLASHLQPASIKQGSEIPYQVSSGDSGATSVEFKEAVLGMEVTPTVLDD 313

Query: 326 GRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            R+ L+++   + P  V+    G++ +   ++ +T VE+ SG T+ L G+     +  ++
Sbjct: 314 RRVRLKLRISENMPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSQKNKSARD 373

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GIPLL  IP LG LFR+   + E  E+ +  TP ++
Sbjct: 374 GIPLLGDIPWLGQLFRHDGKDHERRELVVFITPRII 409


>gi|324111701|gb|EGC05681.1| type IV pilus secretin PilQ [Escherichia fergusonii B253]
          Length = 412

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 81/417 (19%), Positives = 150/417 (35%), Gaps = 29/417 (6%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISI--GLNKVIILQVPVDVQDVLVSDPTK 76
           +   +  LP  + A  A + +   +    + +       +  I+  P     V +     
Sbjct: 6   AAILMMALPVAQAAKPAKVTLVVDDAPVAQVLQALAEQERQNIVVSPDVSGLVSLHLIDV 65

Query: 77  -----ADVVVHSPRTMYLFGKNVGQA---NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
                   VV S     L  +  G     +     ++       +         +E    
Sbjct: 66  PWKQALQTVVKSAG---LVSRQEGNILHIHSAAWQNENAARQEAEQARRLASLPVEHRAI 122

Query: 129 RFIADSNIRVEMVSDTVV-LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                    +      ++   G +     + R +            N+ A ++ +  ++ 
Sbjct: 123 ALQYADAAELAKAGGKLLSAKGSMTVDTRTNRLL---------LRDNKTALAALEHWISE 173

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           +++    QV L   I  +    L+++G + +   +                        V
Sbjct: 174 MDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVTTLSSDLAVATATTQV 232

Query: 248 K---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
               G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GA
Sbjct: 233 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 292

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           TSV   +  + +  TPTVL  GRI L++     V   V+  + G++ +   ++ +T VE+
Sbjct: 293 TSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGEVLTIDKQEIETQVEV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG T+ L G+     +  K+ IPLL  IP LG LF +     E  E+ +  TP LV
Sbjct: 353 KSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENERRELVVFITPRLV 409


>gi|333013071|gb|EGK32447.1| transport protein hofQ [Shigella flexneri K-227]
          Length = 386

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 70/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNDNIARQESEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|323174021|gb|EFZ59649.1| transport protein hofQ [Escherichia coli LT-68]
          Length = 386

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 71/331 (21%), Positives = 132/331 (39%), Gaps = 12/331 (3%)

Query: 100 ILIGHDGKQMLNLDILIERDI----AHLEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153
           ++   +G  +    I  + +        +   +  +   N  I ++      +     + 
Sbjct: 54  LITRQEGNILSVHSIAWQNNNIARQEAEQARAQANLPLENCSITLQYADAGELAKAGEKL 113

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +           T       N+ A S+ ++ +  +++    QV L   I  +    L+++
Sbjct: 114 LSAKGSMTVDKRTNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLREL 172

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIR 270
           G + ++  +            G           V    G ++    +  L ALE+   + 
Sbjct: 173 GVKWTLADAQHAGGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLD 232

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L
Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292

Query: 331 RIQ--TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++     V   V+    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL
Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLL 352

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IP  G LFR+     E  E+ +  TP LV
Sbjct: 353 GDIPWFGQLFRHDGKEDERRELVVFITPRLV 383


>gi|331684967|ref|ZP_08385553.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331077338|gb|EGI48550.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|302189475|ref|ZP_07266148.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae 642]
          Length = 701

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 104/257 (40%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E   D  KQ+G +     + SG S   A           
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNISGTSNWSAGGLDNRGDEAG 495

Query: 237 ---------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                    +  V +    +  L A+E+      +++P +    
Sbjct: 496 NTGNSLGPNIPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691


>gi|323142233|ref|ZP_08077067.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
 gi|322413296|gb|EFY04181.1| bacterial type II/III secretion system short domain protein
           [Phascolarctobacterium sp. YIT 12067]
          Length = 364

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/239 (28%), Positives = 106/239 (44%), Gaps = 7/239 (2%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QVTL+  I  V R+  K +G +           ++   D           F      
Sbjct: 113 ATRQVTLEAKIIAVSREDSKNMGVRWDWDTIPQRAQETNNGDSDSSNYDGSFKFWRGFAF 172

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--SSSTGATSVTT 309
               F   L+AL  +   R LA P +  I G+ AS   G     +T    SS   T+   
Sbjct: 173 ---RFNATLNALINSGKARILATPRIITIPGKEASIFIGDHIPVQTEKHDSSGSYTATEY 229

Query: 310 HDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            D G+ L + P +   G+ +   + TEVS PV+ ++         R ADT V + SG T+
Sbjct: 230 LDAGIKLQYAPIISEDGKMVTASVHTEVSTPVL-ISELKNYRITSRTADTNVRMYSGETL 288

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           V+ GL+ ++ Q+  + +P LSKIP+LG LF+N   +  +TE+ +  TP + +  A   +
Sbjct: 289 VIGGLISEEQQRTMQKVPFLSKIPLLGELFKNRSRSHNKTEVLLLLTPHITEAGASPAI 347


>gi|149378291|ref|ZP_01896001.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149357425|gb|EDM45937.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/468 (18%), Positives = 163/468 (34%), Gaps = 69/468 (14%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN-----KVIILQVPVDV 66
           +   L         L  +  ANA +++     I + ++I   L+     +V ++Q+    
Sbjct: 142 LVPILRPLVAKYGHLAGVAAANALIVSDHSSNIQRIEQIVRELDSPSKYEVEVIQLEEAW 201

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIA 121
               V D     +   +P  +   G+  G       +V       + +L  D      + 
Sbjct: 202 ----VGD-MVELLQELAPAEL---GQGGGDNAARKYSVTADERSNRLILRGDETFRDKMR 253

Query: 122 HLEMTLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            L   L +  A             +  + T +L G++  +              + SGRN
Sbjct: 254 ELIRKLDQPSATGGTTKVIRLSHADAENLTEILKGVMGEVVKESSGGSGGAGGSAGSGRN 313

Query: 175 QYANSSSKKVMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQ 216
              +  + + +N L + G                    QV ++  I E+  ++ + +G Q
Sbjct: 314 TNFSVFADEGLNALVVRGEPSMMQEAEMIVKALDVRRAQVMIEAAIVEISDELGQDLGVQ 373

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFE 257
            ++   S   +     +F     S G                            +  S+ 
Sbjct: 374 LALGDESGESTPVAGTNFNNVGRSLGDVLGAILSDSVIAPATGGITIGAGQRNENGVSWG 433

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTH 310
            +L AL  + A   L+ P++  +  Q +    G    ++T  S+          T++   
Sbjct: 434 VLLQALSTSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERR 493

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D G+ L  TPT+ + G + L ++         V +        R+  TTV    G TIVL
Sbjct: 494 DIGLTLKVTPTISADGLVRLVVEQTTENIGDSVESASDIITNKREIKTTVLADDGETIVL 553

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            GL  DD+Q  K  +PLL  IP+LG LF +    R +  + +   P +
Sbjct: 554 GGLTTDDLQVNKSKVPLLGDIPVLGRLFSSESERRVKRNLLVFLRPTI 601


>gi|88861010|ref|ZP_01135645.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
 gi|88816938|gb|EAR26758.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas tunicata D2]
          Length = 659

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 58/307 (18%), Positives = 116/307 (37%), Gaps = 48/307 (15%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           + V+  ++T+++    ++I++ +R VE  +  +                          Q
Sbjct: 378 VSVDTRTNTLLIKDTAKSIENVRRMVETLDVAV-------------------------KQ 412

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFG 235
           V ++  +  VR  + + +G +   +        +                       +  
Sbjct: 413 VVIESRMVTVRDSVQEDLGIRWGFSDQQLTDGIAGTLAGAQKISNGVIPTLAERLNVNLA 472

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               +      +  + D    +  L ALE+      +A P +T  + + A    G +  Y
Sbjct: 473 VTNPAGSIGMHIAKLADGTLIDLELSALEQENKAEIIASPRITTANQKKARIEQGTEIPY 532

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRV 353
              +SS GAT+V      + L  TP +    ++ L +      P   +    G+  +   
Sbjct: 533 VQAASS-GATTVEFKKAVLSLEVTPHITPDNKVILDLVITQDTPGDTVQTPTGNAVAINT 591

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++  T V + +G TIVL G+ +  +      +PLL  IP LGALF+ +    E+ E+ I 
Sbjct: 592 QEIRTQVLVENGQTIVLGGIYQQQVINSSSKVPLLGDIPYLGALFKRTSEKTEKKELLIF 651

Query: 414 ATPFLVK 420
            TP ++K
Sbjct: 652 VTPKILK 658


>gi|89110685|ref|AP_004465.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. W3110]
 gi|90111569|ref|NP_417784.4| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|170082844|ref|YP_001732164.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238902416|ref|YP_002928212.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|256025947|ref|ZP_05439812.1| general secretory pathway component, cryptic [Escherichia sp.
           4_1_40B]
 gi|300932218|ref|ZP_07147497.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300946547|ref|ZP_07160812.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300954740|ref|ZP_07167173.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|301643855|ref|ZP_07243886.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|14917006|sp|P45758|GSPD_ECOLI RecName: Full=Probable general secretion pathway protein D; Flags:
           Precursor
 gi|85676716|dbj|BAE77966.1| general secretory pathway component, cryptic [Escherichia coli str.
           K12 substr. W3110]
 gi|87082242|gb|AAC76350.2| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. MG1655]
 gi|169890679|gb|ACB04386.1| general secretory pathway component, cryptic [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238861291|gb|ACR63289.1| general secretory pathway component, cryptic [Escherichia coli
           BW2952]
 gi|260447656|gb|ACX38078.1| general secretion pathway protein D [Escherichia coli DH1]
 gi|300318291|gb|EFJ68075.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300453793|gb|EFK17413.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460042|gb|EFK23535.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|301077758|gb|EFK92564.1| general secretion pathway protein D [Escherichia coli MS 146-1]
 gi|309703737|emb|CBJ03078.1| probable general secretion pathway protein D precursor [Escherichia
           coli ETEC H10407]
 gi|315618942|gb|EFU99525.1| general secretion pathway protein D [Escherichia coli 3431]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|254163253|ref|YP_003046361.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
 gi|253975154|gb|ACT40825.1| general secretory pathway component, cryptic [Escherichia coli B
           str. REL606]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|110643564|ref|YP_671294.1| general secretion pathway protein D precursor [Escherichia coli
           536]
 gi|191171536|ref|ZP_03033084.1| general secretion pathway protein D [Escherichia coli F11]
 gi|300974004|ref|ZP_07172411.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|331649123|ref|ZP_08350209.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331659615|ref|ZP_08360553.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|110345156|gb|ABG71393.1| probable general secretion pathway protein D precursor [Escherichia
           coli 536]
 gi|190908163|gb|EDV67754.1| general secretion pathway protein D [Escherichia coli F11]
 gi|281180360|dbj|BAI56690.1| general secretion pathway protein D [Escherichia coli SE15]
 gi|300309014|gb|EFJ63534.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|312947876|gb|ADR28703.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315298623|gb|EFU57878.1| general secretion pathway protein D [Escherichia coli MS 16-3]
 gi|324009016|gb|EGB78235.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324014941|gb|EGB84160.1| general secretion pathway protein D [Escherichia coli MS 60-1]
 gi|330909367|gb|EGH37881.1| general secretion pathway protein D [Escherichia coli AA86]
 gi|331041621|gb|EGI13765.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331052830|gb|EGI24863.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 654

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 599


>gi|218691610|ref|YP_002399822.1| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|218429174|emb|CAR10129.2| general secretory pathway component, cryptic [Escherichia coli
           ED1a]
 gi|222035034|emb|CAP77777.1| general secretion pathway protein D [Escherichia coli LF82]
          Length = 650

 Score =  181 bits (460), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|255658549|ref|ZP_05403958.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
 gi|260849353|gb|EEX69360.1| putative type IV pili biogenesis protein PilQ [Mitsuokella
           multacida DSM 20544]
          Length = 430

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 148/398 (37%), Gaps = 45/398 (11%)

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVVHSPRT--------------MYLFGKNVGQANVIL 101
           + ++L +     + +V D + A  V                    + L     G   ++ 
Sbjct: 38  RSVLLSLARTAHENIVLDDSVAGTVTLHATEEPAKLLRMIAASKGLVLI--KEGSTYLVT 95

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                  + ++ +   R               + + ++ V+      G            
Sbjct: 96  TMPRADALRSVHVYPVRHADP-----ADLAHAAELSLKSVAGDKTADGQETGTARRVLVD 150

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             + + L      + AN +  KV+  L+     QV+L+  +  + +D  K++G +   + 
Sbjct: 151 SATNSVLFYGTAAEAANVA--KVVQQLD-RKPRQVSLEAKVLALSKDASKKLGVEWQWSS 207

Query: 222 SSSGPSKSFA------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
               P                          G            +GV   F +   + AL
Sbjct: 208 LPQYPDFETTYRHKGSANEVQEKEIKRHTQDGTVPGIIQFGRGPEGVPFEFYYSATIQAL 267

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPT 321
                 + LA P +T + G+ A    GG+    T  V+++T  T+ T    G++L  TP 
Sbjct: 268 VTQGKAKMLARPNITTVQGREALINIGGEVPVPTQSVTNNTTTTTYTYRQAGIILRCTPR 327

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   GRI   + TEVS P+  V       ++ R ADTTV L  G T+V+ GL+  D  + 
Sbjct: 328 IHEDGRITATVHTEVSSPLY-VEDIKAYRFQNRSADTTVSLRDGETMVIGGLIGSDESRT 386

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP L  +PILG+ FR+ R +R E+EI I  T  ++
Sbjct: 387 LSKIPFLGDLPILGSFFRSVRQSRSESEIMIFLTAHVI 424


>gi|323164950|gb|EFZ50741.1| transport protein hofQ [Shigella sonnei 53G]
          Length = 385

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 65  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 303

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 364 DGKEDERRELVVFITPRLV 382


>gi|271502312|ref|YP_003335338.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
 gi|270345867|gb|ACZ78632.1| type IV pilus secretin PilQ [Dickeya dadantii Ech586]
          Length = 433

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 147/397 (37%), Gaps = 40/397 (10%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V VQ VL +    AD    +   + +     G  ++ L     +Q L++ + + +    
Sbjct: 40  DVPVQRVLQA---LADHQQLN---LVVAPGVAGNISLNLQQVPWQQALDIILRMGQLTVE 93

Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172
            + ++     D+ ++                + L  +  T+Q ++    ++       + 
Sbjct: 94  QQNSVMMVYPDTYVKDRQQKQEELAAKQRLQLPLQNLSVTLQYAEATEVVANLQSQRGTL 153

Query: 173 RNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQIG 214
             +  N +  K  N L I                      QV L   I  +  + LK +G
Sbjct: 154 LTERGNVTVDKRTNTLLIRDVASALEQIRPWIDALDKPLSQVQLAAHIVTISSEHLKALG 213

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271
               +  +S         +F      E    +       L+    +  L ALE+   +  
Sbjct: 214 VNWGLGEASIAGQAMQMNNFTVNLPVESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  TP +L  G+I L 
Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333

Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +    + P   +     G++ +   ++  T V +  G TIVL G+ +    Q +  +P L
Sbjct: 334 LLISQNMPGRAIKQGEGGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQGERQVPGL 393

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +P +G LFR +       E+ I  TP L++     
Sbjct: 394 GALPGIGRLFRATSQQHTRRELVIFITPTLIQAAKRA 430


>gi|297519102|ref|ZP_06937488.1| outer membrane porin HofQ [Escherichia coli OP50]
 gi|300907468|ref|ZP_07125113.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300931080|ref|ZP_07146434.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|301302267|ref|ZP_07208399.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|300400806|gb|EFJ84344.1| type IV pilus secretin PilQ [Escherichia coli MS 84-1]
 gi|300461100|gb|EFK24593.1| type IV pilus secretin PilQ [Escherichia coli MS 187-1]
 gi|300842430|gb|EFK70190.1| type IV pilus secretin PilQ [Escherichia coli MS 124-1]
 gi|315255979|gb|EFU35947.1| type IV pilus secretin PilQ [Escherichia coli MS 85-1]
 gi|320199559|gb|EFW74149.1| Type IV pilus biogenesis protein PilQ [Escherichia coli EC4100B]
 gi|323154220|gb|EFZ40423.1| transport protein hofQ [Escherichia coli EPECa14]
 gi|323162775|gb|EFZ48612.1| transport protein hofQ [Escherichia coli E128010]
          Length = 386

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|238752500|ref|ZP_04613975.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
 gi|238709263|gb|EEQ01506.1| General secretion pathway protein D [Yersinia rohdei ATCC 43380]
          Length = 625

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 55/282 (19%), Positives = 111/282 (39%), Gaps = 18/282 (6%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +I+  ++   L  T + +  +        +KV+  L++    QV ++  I E +      
Sbjct: 291 SIKAHEQTNSLVITAVPKIMKEL------EKVIEKLDVR-RAQVLVEAIIVETQNGEGLN 343

Query: 213 IGFQHSITGSSSGPS----KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +G Q +              S   +   +         +     + +++ +  AL   + 
Sbjct: 344 LGIQWANKFYGGVNFLPKPDSIKDNKSSENPVPMLITGLTAGFYKGNWDGLFTALATNSN 403

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLS 324
              LA P++  +    A F  G +    T + +T       S++    GV+L   P +  
Sbjct: 404 NNILATPSIVTLDNMEAEFNVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINK 463

Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              + L I+ EVS      +         +  R  +  V + SG T+V+ GLL   I + 
Sbjct: 464 GDSVLLEIRQEVSSIADNSDINTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKT 523

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
              +P L  IP++GALFR S+   E++ + +   P +++  +
Sbjct: 524 INKVPFLGDIPLIGALFRQSKERMEKSNLILFIKPTILRETS 565


>gi|289806224|ref|ZP_06536853.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 295

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 114/252 (45%), Gaps = 6/252 (2%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            N+ A +  +K ++ +++    QV L   I  +    L+++G + ++  ++   +     
Sbjct: 42  DNRAALAELEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVT 100

Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                         V    G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 101 TLSSDLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 160

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G+
Sbjct: 161 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 220

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E 
Sbjct: 221 VLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDER 280

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 281 RELVVFITPRLV 292


>gi|237798101|ref|ZP_04586562.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
 gi|331020953|gb|EGI01010.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. oryzae str. 1_6]
          Length = 701

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 107/257 (41%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------K 228
           ++++ L+I    QV ++  I E   D  KQ+G +     + SG S               
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGRTNLSGSSKWSAGGLDNNGDEAG 495

Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           +   + G           +      +  V +    +  L A+E+      +++P +    
Sbjct: 496 NTGNNLGPNIPFVDLGAANATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691


>gi|28872241|ref|NP_794860.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213969446|ref|ZP_03397583.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
 gi|28855495|gb|AAO58555.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213925817|gb|EEB59375.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato T1]
          Length = 718

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 362 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 418

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 419 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 477

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++S                  +  A+                    
Sbjct: 478 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 537

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 538 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 596

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 597 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 656

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 657 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 708


>gi|325265676|ref|ZP_08132365.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
 gi|324982807|gb|EGC18430.1| type IV pilus secretin PilQ [Kingella denitrificans ATCC 33394]
          Length = 705

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 54/264 (20%), Positives = 97/264 (36%), Gaps = 29/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSGPSK------ 228
           ++++  L++  + QV ++  I E    + + +G +           GS+ G         
Sbjct: 434 QRLIEELDVPAK-QVMVEARIVEAADGVARDLGVKFGANRQGSTSWGSNWGNGVEANRRY 492

Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                        +FA +      S     +V       +    L A+E     +T++ P
Sbjct: 493 VGNGTGSGSNGGVNFAPNVNLPVSSATSSIAVIRSWASGALGLELSAMETDNLTKTISTP 552

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A    G Q  Y     S G  + +  D  + L  TP +    +I L I   
Sbjct: 553 RVLTQDRKEAEIRQGTQIPYT-TRGSNGEVTTSFKDAILSLKVTPRITPDSKIILDITIN 611

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             EP    VN    P    R   T   +  GGT+V+ G+ ++ +      +P L  IP+L
Sbjct: 612 KDEPDYTRVNVEGEPGITTRAVKTQAMIEDGGTLVVGGIYQEQMSNNISKVPFLGDIPVL 671

Query: 395 GALFRNSRFNREETEIFIAATPFL 418
           G LF++   +    E+    TP +
Sbjct: 672 GNLFKSRSRSHTRNELLFFITPRI 695


>gi|113869383|ref|YP_727872.1| pili assembly protein PilQ [Ralstonia eutropha H16]
 gi|113528159|emb|CAJ94504.1| pili assembly protein PilQ [Ralstonia eutropha H16]
          Length = 706

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/289 (21%), Positives = 107/289 (37%), Gaps = 24/289 (8%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209
            + +   R   L+    +         S  ++V N +        QV ++  I E     
Sbjct: 414 ASARMLSRRGSLTADARTNQLFVSDIASKLEEVQNFIGKIDIPVRQVIIEARIVEATDSF 473

Query: 210 LKQIGFQHSITG-------------------SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            + +G +    G                   S +GP  S  A             S+   
Sbjct: 474 SRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGAINGTNPANIAVSLFNS 533

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L ALE     + ++ P +   +   A    G +  Y+  +SS GATSV   
Sbjct: 534 AATKFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELPYQAATSS-GATSVQFR 592

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
              + L  TP +   G + L    +V++  +G+      +   +   T V + +GGT+V+
Sbjct: 593 KANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTKHVQTQVLVENGGTVVI 650

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+         + +PLL  IP+LG LF+N+   R  TE+ +  TP ++
Sbjct: 651 GGIYTQTESNETDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFLTPRIL 699


>gi|332345342|gb|AEE58676.1| transport protein PilQ [Escherichia coli UMNK88]
          Length = 386

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|238927984|ref|ZP_04659744.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
 gi|238883944|gb|EEQ47582.1| Fimbrial type IV assembly protein pilQ precursor [Selenomonas
           flueggei ATCC 43531]
          Length = 428

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/335 (22%), Positives = 130/335 (38%), Gaps = 18/335 (5%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +     +         + +       L          V   +  +   G   +    +  
Sbjct: 96  VHDAQRRVHTYTVRYADPEELAHAANLSLTGEGKRAIVSKPNKDIGESGDQSSDVQRRVL 155

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           V+ +   L   G    A +  + V  L       QV+L+  +  V +   K++G   S +
Sbjct: 156 VDTATNTLLFYGTESEAFAVREIVSALD--TAPRQVSLEARVVAVSKRAAKELGVDWSWS 213

Query: 221 G---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERAT 267
                      S+G       + G    S  G        +     F +   + AL    
Sbjct: 214 SLPQYPNVTRDSAGNWHVSGRNAGTAGRSAPGVIRFGRGPEGLPYEFYYSAAIRALITEG 273

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSP 325
             + LA P +T + G+ A    G +     V++S   T+  +   + G++L +TP V + 
Sbjct: 274 KAKMLARPNVTTVQGREALINIGAEVPVPVVTTSNNVTTTGIEYREAGIILRYTPRVTAD 333

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G I   + TEVS PV  V+      ++ R ADTTV L +G T+V+ GL+  D  +    I
Sbjct: 334 GNIVAHVHTEVSTPVF-VDDLKAYRFQKRSADTTVRLKNGETMVIGGLIDSDESRTLAKI 392

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           P L  +P+LGA FR  R ++ E+E+ I  T  ++ 
Sbjct: 393 PFLGDLPLLGAFFRTVRTSKNESELMIFLTAHVLD 427


>gi|109896995|ref|YP_660250.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
 gi|109699276|gb|ABG39196.1| type IV pilus secretin PilQ [Pseudoalteromonas atlantica T6c]
          Length = 580

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 132/350 (37%), Gaps = 25/350 (7%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +        +   + +A L   +   +  +  + + V+   +L    
Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +I   + +V + E   +   R+   +    + +         QV ++  +  VR +  +
Sbjct: 285 SSILSPRGSVAVDERTNTVLLRDTQTSIDEARKLIRALDIPVKQVLIESRMVTVRDNAGE 344

Query: 212 QIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVL 251
           Q+G +   + +S   + S                       +      +      V  ++
Sbjct: 345 QLGVRWGFSNNSGDTATSGSIEGADTLSSGVVPSIDNRLNVNLPVTNPAGSIGIQVARLV 404

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE       +A P +T  + + A    G +  Y   +SS GATSV    
Sbjct: 405 DGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFKK 463

Query: 312 YGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + L  TP +    RI L   +  +     +  + G   +   ++  T V + +G TIV
Sbjct: 464 AVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETIV 523

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +         +PLL  IP+LG LF+N++   E+ E+ I  TP ++
Sbjct: 524 LGGIFQQTTTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573


>gi|311695246|gb|ADP98119.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 663

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/461 (18%), Positives = 159/461 (34%), Gaps = 59/461 (12%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
           +   L         L  +  ANA +I+     I + ++I   L+     +V V  +Q+  
Sbjct: 156 LVPILRPLVAKYGHLAGVAAANALIISDHSSNIQRIEQIVRELDSPSKYEVEVIQLQEAW 215

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125
           V D     +   +P  +   G+  G       +V       + +L  D      +  L  
Sbjct: 216 VGD-MVTLLQELAPDEL---GRAGGDNAARKYSVTADERSNRLILRGDETFREKMRGLIR 271

Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMV---------------RTIQDSQRAVEL 163
            L +  A             +  + T +L G++                  Q S      
Sbjct: 272 QLDQPSATGGTTKVLRLKHADAKNLTEILKGVMGELVKEGTGSGSGGAAKPQSSFAVFAD 331

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                            +++++  L++    QV ++  I E+  ++ + +G Q ++   S
Sbjct: 332 EGLNALVVRGEPSLMQEAEQIVAALDVR-RAQVMIEAAIVEISDELGQDLGVQVAVGDES 390

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------DRFSFETVLHALE 264
              +     +FG    S G   S                        +  S+  +L AL 
Sbjct: 391 GESTPVAGTNFGNVGRSLGEVLSAILTGSAITPATGGITIGAGQRNENGVSWGVLLQALS 450

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLH 317
            + A   L+ P++  +  Q +    G    ++T  S+          T++   D G+ L 
Sbjct: 451 TSAAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDIGLTLK 510

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TPT+ + G + L ++         +          R+  TTV    G TIVL GL +DD
Sbjct: 511 VTPTISADGLVRLVVEQTTESVADSIENASDIVTNKREIKTTVLADDGETIVLGGLTRDD 570

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            Q  K  +PLL  IP +G LF +    R +  + +   P +
Sbjct: 571 YQVNKSKVPLLGDIPFVGRLFSSESERRVKRNLLVFLRPKI 611


>gi|300815414|ref|ZP_07095639.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300919331|ref|ZP_07135842.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300926924|ref|ZP_07142688.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300946869|ref|ZP_07161109.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300956717|ref|ZP_07168988.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|301329693|ref|ZP_07222442.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301645828|ref|ZP_07245743.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|309794656|ref|ZP_07689078.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|110616771|gb|ABF05438.1| putative transport portein [Shigella flexneri 5 str. 8401]
 gi|300316473|gb|EFJ66257.1| type IV pilus secretin PilQ [Escherichia coli MS 175-1]
 gi|300413587|gb|EFJ96897.1| type IV pilus secretin PilQ [Escherichia coli MS 115-1]
 gi|300417082|gb|EFK00393.1| type IV pilus secretin PilQ [Escherichia coli MS 182-1]
 gi|300453478|gb|EFK17098.1| type IV pilus secretin PilQ [Escherichia coli MS 116-1]
 gi|300532306|gb|EFK53368.1| type IV pilus secretin PilQ [Escherichia coli MS 107-1]
 gi|300844205|gb|EFK71965.1| type IV pilus secretin PilQ [Escherichia coli MS 78-1]
 gi|301075906|gb|EFK90712.1| type IV pilus secretin PilQ [Escherichia coli MS 146-1]
 gi|308121706|gb|EFO58968.1| type IV pilus secretin PilQ [Escherichia coli MS 145-7]
 gi|315619010|gb|EFU99593.1| transport protein hofQ [Escherichia coli 3431]
 gi|320181878|gb|EFW56784.1| Type IV pilus biogenesis protein PilQ [Shigella boydii ATCC 9905]
 gi|323182850|gb|EFZ68251.1| transport protein hofQ [Escherichia coli 1357]
 gi|332085536|gb|EGI90702.1| transport protein hofQ [Shigella boydii 5216-82]
          Length = 386

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|119470430|ref|ZP_01613158.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
 gi|119446355|gb|EAW27631.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonadales bacterium TW-7]
          Length = 697

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 61/326 (18%), Positives = 122/326 (37%), Gaps = 49/326 (15%)

Query: 116 IERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            E     L+  +   I    ++ V+  ++T+++   V++I++ +R               
Sbjct: 395 AEDFADLLKTDINSIITPRGSVSVDQRTNTLLVKDTVKSIENIRRM-------------- 440

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS----- 229
                     +  L+I    QV ++  +  VR ++ + +G +   +        S     
Sbjct: 441 ----------IETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQQGSDGISGSLEG 489

Query: 230 ---------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                             +      +      +  + +    +  L ALE       +A 
Sbjct: 490 AETISNGVIPDLTDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIAS 549

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P + A + Q A    G +  Y   +SS GAT+V+     + L  TP +    ++ L +  
Sbjct: 550 PRIIAANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLII 608

Query: 335 EVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                  V+    G+  S   ++  T V + +G TIVL G+ +  I      +P+L  IP
Sbjct: 609 TQDTRGDVVQTGTGEAVSIDTQEIQTQVLVENGQTIVLGGIFQQQIINTTNKVPVLGDIP 668

Query: 393 ILGALFRNSRFNREETEIFIAATPFL 418
            +G LF+++    E+ E+ I  TP +
Sbjct: 669 YVGRLFKSTSEFNEKRELLIFVTPKI 694


>gi|301023148|ref|ZP_07186952.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
 gi|299880971|gb|EFI89182.1| type IV pilus secretin PilQ [Escherichia coli MS 196-1]
          Length = 389

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 69  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 128

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 129 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 187

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 188 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 247

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 248 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 307

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 308 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 367

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 368 DGKEDERRELVVFITPRLV 386


>gi|289648291|ref|ZP_06479634.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 701

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
           D  KQ+G +   + ++SG  K                                       
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|259907443|ref|YP_002647799.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|224963065|emb|CAX54548.1| General secretion pathway protein D [Erwinia pyrifoliae Ep1/96]
 gi|283477275|emb|CAY73191.1| Type II secretion system protein outD [Erwinia pyrifoliae DSM
           12163]
          Length = 645

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  + ++                         AD        + + G  + +  ++
Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
                       D      + +L+      + +    V               +  ++  
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313

Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V  ++T  +    N   +     ++++  L+I+   QV ++  I EV+      +G Q  
Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
                     +  A       S           +       ++  + +AL+  +    LA
Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
            P++  +    A FT G      T S +T       SV     G+ L   P +     + 
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492

Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + I+ EVS      +   +  ++  R    TV + SG T+V+ GLL     +++  +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            KIP+LGALFR +   + +  + +   P +++
Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584


>gi|131592|sp|P15644|GSPD_KLEPN RecName: Full=General secretion pathway protein D; AltName:
           Full=Pullulanase secretion envelope pulD; Flags:
           Precursor
 gi|7246031|gb|AAA25126.2| pulD (ttg start codon) [Klebsiella pneumoniae]
          Length = 660

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 118/312 (37%), Gaps = 38/312 (12%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL G+  T+Q  ++A +             +  +++             ++V+  L+I  
Sbjct: 285 VLTGISSTMQSEKQAAKPVAALDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRR 344

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242
             QV ++  IAEV+      +G Q +   +      +                       
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTVSS 403

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                      +     + ++  +L AL  +T    LA P++  +    A+F  G +   
Sbjct: 404 SLASALSSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMEATFNVGQEVPV 463

Query: 296 KTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDM 348
            T S +T       +V     G+ L   P +     + L I+ EVS   +     ++   
Sbjct: 464 LTGSQTTSGDNIFNTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSTSSDLG 523

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            ++  R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR++     + 
Sbjct: 524 ATFNTRTVNNAVLVGSGETVVVGGLLDKSVSDTADKVPLLGDIPVIGALFRSTSKKVSKR 583

Query: 409 EIFIAATPFLVK 420
            + +   P +++
Sbjct: 584 NLMLFIRPTVIR 595


>gi|289625073|ref|ZP_06458027.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330865718|gb|EGH00427.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 701

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/352 (17%), Positives = 133/352 (37%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKTDERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGG---------------------KFVSEGGDFS 246
           D  KQ+G +   + ++SG  K                                       
Sbjct: 461 DYNKQLGVRWGGSTNTSGNGKWTTYGLDNNGDEASNTGSNVTSNVPFVDMGASGATSGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNALLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|301064256|ref|ZP_07204699.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300441701|gb|EFK06023.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 694

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 70/309 (22%), Positives = 118/309 (38%), Gaps = 28/309 (9%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G    I    R V    T       +       ++V+  L+I     V ++  I EV  
Sbjct: 355 KGKAPLISKEARIVADQATNSLVIMADPDDYMILEEVIQKLDIP-RMMVFIEALIMEVNV 413

Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248
           +    +G +               +  GSS G   + +   G   + +G    V      
Sbjct: 414 NKDFNLGVEWEGVKTFTYDGKDAAAFAGSSPGNFDTISGVVGKGTLPQGFSMGVITDTIE 473

Query: 249 -GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----G 303
              +   +   V++A ++   +  L+ P L     + A    G    Y+    +T     
Sbjct: 474 IAGVKFPNLAAVVNAYQQDRDVHILSTPQLLTTDNEEAEIMVGRNVPYQVRQETTAAELD 533

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVE 361
            +S    D GV L  TP +     + L+I  EV+  V      A D P    R A TTV 
Sbjct: 534 YSSYEYKDVGVTLKVTPQISLERSVRLKIYQEVTRLVDNNALTASDRPETYKRLAQTTVI 593

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK- 420
           +    T+V+ GL+ DD    +  +P L  IP++G LF+ +   RE+T +FI  TP +++ 
Sbjct: 594 VKDANTVVIGGLIGDDTTHTEYKVPCLGDIPLVGWLFKGTSKKREKTNLFIFLTPRIIQN 653

Query: 421 PVAMRDLSR 429
           P   + +  
Sbjct: 654 PAEAKKIYL 662


>gi|239998226|ref|ZP_04718150.1| PilQ [Neisseria gonorrhoeae 35/02]
 gi|240112199|ref|ZP_04726689.1| PilQ [Neisseria gonorrhoeae MS11]
 gi|268594082|ref|ZP_06128249.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268598258|ref|ZP_06132425.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|268547471|gb|EEZ42889.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 35/02]
 gi|268582389|gb|EEZ47065.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae MS11]
 gi|317163512|gb|ADV07053.1| PilQ [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 731

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 705 GKKTDRRELLIFITPRIID 723


>gi|167036119|ref|YP_001671350.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
 gi|166862607|gb|ABZ01015.1| type IV pilus secretin PilQ [Pseudomonas putida GB-1]
          Length = 420

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 66/426 (15%), Positives = 150/426 (35%), Gaps = 24/426 (5%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+   +     +     +S  S    P         +      +     +++  +  +  
Sbjct: 1   MKTWMKYLLATLLSVPLASATSYEGEPLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQG 60

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            V + +QD  V      D+V+ S     L  +  G   ++    D           +   
Sbjct: 61  NVTMRLQD--VPWDQALDLVLRSKG---LARRQEGNVLLVAPAADFAAQSAGTRAGQVLE 115

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQSG 172
           A L+   R  +   + +   +++ +        +L G +   + +   V           
Sbjct: 116 AQLQPLRRELLPIHHAKAADLAELLQSSLVGDGILTGSLSVDERTNTLV---------VH 166

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                 +  ++++  L++    QV ++  I E   D  K +G +       +        
Sbjct: 167 MPADRLAELRQLVTQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGAQLRPGKEL 225

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    GG   +  +      +  L A+E++     +++P +     ++A    G +
Sbjct: 226 FVDLGVERAGGSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTE 285

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
             Y+  S S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R
Sbjct: 286 VPYQETSQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIR 344

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             + +  V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +
Sbjct: 345 KNEVNAKVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLV 404

Query: 413 AATPFL 418
             TP +
Sbjct: 405 FLTPRI 410


>gi|170766950|ref|ZP_02901403.1| protein transporter HofQ [Escherichia albertii TW07627]
 gi|170124388|gb|EDS93319.1| protein transporter HofQ [Escherichia albertii TW07627]
          Length = 386

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  D +  ++           + + NI ++      +     + +           
Sbjct: 66  HSIAWQNDNIARQEAEWARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A ++ ++    +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKAALTALEQWAAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHV 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S       G           +    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GSVGQVTTLGSDLSVATATTHIGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|240013410|ref|ZP_04720323.1| PilQ [Neisseria gonorrhoeae DGI18]
 gi|240015851|ref|ZP_04722391.1| PilQ [Neisseria gonorrhoeae FA6140]
 gi|240120480|ref|ZP_04733442.1| PilQ [Neisseria gonorrhoeae PID24-1]
          Length = 731

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 705 GKKTDRRELLIFITPRIID 723


>gi|238756264|ref|ZP_04617580.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
 gi|238705519|gb|EEP97920.1| General secretion pathway protein D [Yersinia ruckeri ATCC 29473]
          Length = 660

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 96/269 (35%), Gaps = 13/269 (4%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ++T               ++V+  L+I    QV ++  I EV+ +    +G Q       
Sbjct: 333 AQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDNDDLNLGVQWFNRHGG 391

Query: 224 SGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                   A            S  G   +     R ++  +  AL   +    LA P++ 
Sbjct: 392 GSNFPDTGASASSISANNIGSSLNGVAGLATGFYRGNWSGLFTALRTNSQNDILATPSIV 451

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A F+ G +    T S +T       +V     G+ L   P +     + L I+ 
Sbjct: 452 TLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQ 511

Query: 335 EVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS       G       ++  R     V + S   +V+ GLL      +   +PLL  I
Sbjct: 512 EVSSVAEKTPGGTGDLGATFNTRTVKNAVMVGSNNIVVVGGLLDSTSHDITSKVPLLGDI 571

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P +G LFR++     +  + +   P +++
Sbjct: 572 PGIGFLFRSTSQKMVKRNLMLFIRPTIIR 600


>gi|320175756|gb|EFW50842.1| Type IV pilus biogenesis protein PilQ [Shigella dysenteriae CDC
           74-1112]
          Length = 386

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLKNRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEYERRELVVFITPRLV 383


>gi|298530088|ref|ZP_07017490.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509462|gb|EFI33366.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 504

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 78/491 (15%), Positives = 164/491 (33%), Gaps = 78/491 (15%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVIN----ISDVEIGKGKKIS-------- 51
             RT+     + LF    ++A     ++     +     +++   G   ++         
Sbjct: 22  SSRTYSVCTLLILFILAAAIAGCTGTRDQEEPFMTQWWDLAEESRGHTHEVEERESLDIE 81

Query: 52  ----------------IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
                           +  ++V +      V  +L +    AD      + + +     G
Sbjct: 82  PSHIDLEDIEPEPAHELPRDRVTLNMQQAPVATILRALSRIAD------QNIIVSETVEG 135

Query: 96  QANVIL----IGHDGKQM---------LNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
            AN+ +         K +            +IL  + +  L+  L R     +I    ++
Sbjct: 136 TANLNIRDVPWDQAFKSIIASQGLSYVWEGEILRIKSMQDLQHELDRAGLKEDIGRRKLA 195

Query: 143 DTV-------VLHGMVRTIQDSQRAV--------------ELSETFLSQSGRNQYANSSS 181
             +       ++       +  Q  +               +     + S   Q   +  
Sbjct: 196 AELTAPLMHRIVKLNYADPEKLQDNLIRFLSRDGDGEPHGSIVVDEETNSLMIQATRNDM 255

Query: 182 KKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAAD 233
           ++V   +N L+     Q+ ++  I E  +   +++G + S    +               
Sbjct: 256 ERVHKAINHLD-RPRPQILMEANIVEATQRTARELGVRWSGRYVTPLSFEDEVGFGDLLR 314

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               +  +     +   L        L ALER   +  L  P++T +  Q A FT  GQ 
Sbjct: 315 DEAGYTGDMDLSVISARLPGSVLYAHLQALERDGEVNILTSPSITTMDNQMA-FTEHGQR 373

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           +        G+ +V   D  + L   P+V+    + + I+    E     +    P  R 
Sbjct: 374 VPYETVDEDGSRTVEFEDAVLRLEVVPSVMEGNHLKMDIRVNKDEVDFTRDVRGQPVIRT 433

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +  +T + +  G TIV++GL K+ +   + G+  L  +P LG LF++    +E  E  I 
Sbjct: 434 KHTETNLVVRDGETIVISGLSKETLSDTERGVMGLRDLPGLGWLFKSREQEQEMEEFLIF 493

Query: 414 ATPFLVKPVAM 424
            TP +++P   
Sbjct: 494 ITPTILEPQRR 504


>gi|307311947|ref|ZP_07591585.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|306908091|gb|EFN38591.1| type IV pilus secretin PilQ [Escherichia coli W]
 gi|315062668|gb|ADT76995.1| dsDNA transporter subunit [Escherichia coli W]
          Length = 402

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 82  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 141

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 142 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 200

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 201 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 260

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 261 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 320

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 321 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 380

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 381 DGKEDERRELVVFITPRLV 399


>gi|238921473|ref|YP_002934988.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
 gi|238871042|gb|ACR70753.1| protein transport protein HofQ [Edwardsiella ictaluri 93-146]
          Length = 409

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 80/434 (18%), Positives = 151/434 (34%), Gaps = 40/434 (9%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69
            L   +P+   +P     + A ++     + +   +++ L      +  +         V
Sbjct: 1   MLLVMSPTGQAMPLTLWFDRAPLSSVLQAVAEFAGLNLILSEEVRGEATVHIAHTPWPRV 60

Query: 70  LVSDPTKADVVVHSPRTMYLF------GKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           L +     D+ V     + L        + +  A         +      +L   D A +
Sbjct: 61  LDALAEIHDLSVVRRDGILLIQSRARAARQIRPAAAPAPPKPPQMRSQRVVLHYADAATV 120

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           E +LR+             D +   G       +   +  +E       R+         
Sbjct: 121 EKSLRQR-----------RDLLGETGSAVADSRTNALLLRAEVARLAPLRDW-------- 161

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            +  L++    QV L   I  + ++ L+++G + S     S    +        F +   
Sbjct: 162 -IAQLDVPLP-QVQLAAHIVSISQEGLRELGIRWSSGDQRSRGQDTLRGAADAYFSAG-- 217

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                  +   +    L ALER   +  +A P L A  GQ+AS   G +  Y       G
Sbjct: 218 --FQVARIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERG 275

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVE 361
            +++   +  + +  TP +L+  RI L +Q   + P  V+     +  +   ++  T V 
Sbjct: 276 VSTMEFKEAVLGMSVTPRILADARIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVT 335

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L  G T +L G+ +   Q    G P L+ +P+LG L R+        E+ I  TP L+  
Sbjct: 336 LADGDTAMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSA 395

Query: 422 VA--MRDLSRPDDH 433
            +   R L  P   
Sbjct: 396 SSLLPRTLRPPARG 409


>gi|310777966|ref|YP_003966299.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309747289|gb|ADO81951.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 554

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/261 (24%), Positives = 110/261 (42%), Gaps = 16/261 (6%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +     + K +M+ +++  + QV ++  I EV+    +  G       ++   + S   
Sbjct: 230 ASSEEADTLKNIMDKIDVP-DLQVVIEARILEVQEGTGRDWGMSWGYNSNNLTEADSSDG 288

Query: 233 DFGGKFVSEG---------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
             G    ++          G     G+L    F  V   +        LA+P +T ++G+
Sbjct: 289 SGGYLSGTDSYYDASSLSDGITLGLGLLGSDQFSAVYRNVVEDNTTEILAKPVITTLNGK 348

Query: 284 SASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            A+     +  Y      + S    +TS    D G+ L  TP +   G I + +  E+SE
Sbjct: 349 KATIELTEEVPYKELEYVSDSGDATSTSYEFKDVGITLEVTPVITDDGMIKIEVTPEISE 408

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G     +P    RK +T V + +G T+ + GL+KD         P LSKIPILG LF
Sbjct: 409 VT-GYTDDGVPYVSSRKVETNVIVRNGQTLAIGGLIKDTKSTTDTKDPYLSKIPILGYLF 467

Query: 399 RNSRFNREETEIFIAATPFLV 419
           ++S   + +T + I  TP ++
Sbjct: 468 KSSSNEKSKTNLMIFITPKII 488


>gi|297570196|ref|YP_003691540.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926111|gb|ADH86921.1| general secretion pathway protein D [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 690

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 31/291 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH- 217
                + T             + + V+  L+I    Q+ ++  IAE+       +G Q  
Sbjct: 324 DIQADANTNALIMTGPPAVLQNLQTVIRQLDIR-RAQLMIEAVIAEISTARAVDLGIQWF 382

Query: 218 -----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---------FSFE 257
                      +  GS +  S   A D G      G      GV            FSF 
Sbjct: 383 SADADKVIGGTNFPGSGASMSGIAAGDEGSIAALAGLGGFNMGVFSGSTEILGREFFSFG 442

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------SVTT 309
            +++AL R      L+ P+L  +  Q A    G    + T S + GAT        +V  
Sbjct: 443 ALVNALARDGDTNILSTPSLVTMDNQEAEIIVGQNVPFLTGSFTEGATGVGGSPFQTVER 502

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D G+ L   P V     I L+I+ EVS       A  +     R  +T+V +  G  +V
Sbjct: 503 RDVGIKLRVKPQVTEGDVIRLQIEQEVSSVERDDLAAGL-VTNTRNINTSVLVEDGKVLV 561

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L GL+ DD+Q+    +PLL  IP+ GALFR++R  R +  + +   P +++
Sbjct: 562 LGGLISDDVQETVSKVPLLGDIPLFGALFRHTRSERSKRNLMVFLRPVILR 612


>gi|59800555|ref|YP_207267.1| hypothetical protein NGO0094 [Neisseria gonorrhoeae FA 1090]
 gi|240117229|ref|ZP_04731291.1| hypothetical protein NgonPID_02009 [Neisseria gonorrhoeae PID1]
 gi|268602920|ref|ZP_06137087.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|293397705|ref|ZP_06641911.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
 gi|62900657|sp|Q5FAD2|PILQ_NEIG1 RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|59717450|gb|AAW88855.1| pilus secretion protein [Neisseria gonorrhoeae FA 1090]
 gi|268587051|gb|EEZ51727.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID1]
 gi|291611651|gb|EFF40720.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae F62]
          Length = 723

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 458 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 516

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 517 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 576

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 577 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 636

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 637 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 696

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 697 GKKTDRRELLIFITPRIID 715


>gi|237703055|ref|ZP_04533536.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
 gi|226902319|gb|EEH88578.1| general secretion pathway protein D [Escherichia sp. 3_2_53FAA]
          Length = 654

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 59/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 306 PSSTSAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 364

Query: 209 ILKQIGFQHSITGSSSGPSKSFA-------------------ADFGGKFVSEGGDFSVKG 249
               +G Q +     +    +                           +        +  
Sbjct: 365 NGLNLGVQWANKNVGAQQFTNTGLPVFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 424

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 425 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 484

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 485 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 544

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 545 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTVIR 599


>gi|194097721|ref|YP_002000762.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|240124975|ref|ZP_04737861.1| PilQ [Neisseria gonorrhoeae SK-92-679]
 gi|240127489|ref|ZP_04740150.1| PilQ [Neisseria gonorrhoeae SK-93-1035]
 gi|254493004|ref|ZP_05106175.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268683559|ref|ZP_06150421.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268685861|ref|ZP_06152723.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
 gi|193933011|gb|ACF28835.1| PilQ [Neisseria gonorrhoeae NCCP11945]
 gi|226512044|gb|EEH61389.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae 1291]
 gi|268623843|gb|EEZ56243.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-92-679]
 gi|268626145|gb|EEZ58545.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae SK-93-1035]
          Length = 731

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 705 GKKTDRRELLIFITPRIID 723


>gi|332284397|ref|YP_004416308.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
 gi|330428350|gb|AEC19684.1| general secretion pathway protein D [Pusillimonas sp. T7-7]
          Length = 792

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 64/272 (23%), Positives = 104/272 (38%), Gaps = 29/272 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFV 239
           +V++ L+     QV ++  I EV  D   + G Q    G   SS   S    A+F G  +
Sbjct: 466 EVIDQLDQR-RAQVLVESLIVEVSTDKAAEFGIQWMAGGNDLSSGNTSFMGGANFNGSGI 524

Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
           +  G  ++  +                     +   +  ALE       L+ P L  +  
Sbjct: 525 NPSGITTIDALAQGLSLGVVKGTVDILGTEILNLGVLARALESKGDANVLSTPNLMTLDN 584

Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           + AS   G    + T   +           +VT  D G+ L   P +   G + + I  E
Sbjct: 585 EEASIIVGRTVPFVTGQYTTSADGASNPFQTVTREDVGLTLRIRPQISEGGTVKMAIYQE 644

Query: 336 VSEPVIGVNAGDMPSYR-VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS      ++         R  +T V +  G  IVL GLL+D I      +P+L  IP+L
Sbjct: 645 VSSIDGAASSAGAGLITRKRALETNVLVDDGQIIVLGGLLEDTISDSTSAVPVLGDIPVL 704

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFR  + +R +T + +   P +V+      
Sbjct: 705 GNLFRYDKRSRTKTNLMVFLRPHIVRNARDGA 736


>gi|309782882|ref|ZP_07677602.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
 gi|308918306|gb|EFP63983.1| type IV pilus biogenesis protein PilQ [Ralstonia sp. 5_7_47FAA]
          Length = 719

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
            QV ++  I E      + +G +      ++G                           F
Sbjct: 467 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 526

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 527 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 586

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L    +V++  +G+   +  +
Sbjct: 587 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 643

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 644 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 703

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 704 LVFLTPRVL 712


>gi|123443753|ref|YP_001007724.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|27529236|emb|CAC83029.1| Yts1D protein [Yersinia enterocolitica (type 0:8)]
 gi|122090714|emb|CAL13590.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 658

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 107/317 (33%), Gaps = 18/317 (5%)

Query: 148 HGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            G         + V +   ++T               ++V+N L+I    QV ++  I E
Sbjct: 311 KGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVINQLDIR-RAQVLVEAIIVE 369

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETV 259
           V+      +G Q               A       ++ G        +     R ++  +
Sbjct: 370 VQDSDALNLGVQWFNRNGGGSNFPENGASASSITSNDMGSSLKGITGLATGFYRGNWSGL 429

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVV 315
             AL   +    LA P++  +    A F+ G +    + S +T       +V     G+ 
Sbjct: 430 FTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIK 489

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P +     + L I+ EVS       G       ++  R     V + S   +V+ G
Sbjct: 490 LKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIVVVGG 549

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRP 430
           LL      +   +PLL  IP +G LFR++     +  + +   P +++          + 
Sbjct: 550 LLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTIIREQGDYVDASKKK 609

Query: 431 DDHYSVEDDAKAFFFNR 447
            D +  E D       +
Sbjct: 610 LDKFQQEQDIDRTTNGQ 626


>gi|310765060|gb|ADP10010.1| General secretion pathway protein D [Erwinia sp. Ejp617]
          Length = 645

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 63/392 (16%), Positives = 132/392 (33%), Gaps = 24/392 (6%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  + ++                         AD        + + G  + +  ++
Sbjct: 205 ASAPQVAEILNFINGDSKKTGSNKPFAK------AVADTRT---NAVLITGDELARQQLV 255

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
                       D      + +L+      + +    V               +  ++  
Sbjct: 256 --DAARNLDEEKDRSSNSRVFYLKHAKAENLLEVLSGVSSTMQDKSESKTASPVAMTKDI 313

Query: 161 VELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V  ++T  +    N   +     ++++  L+I+   QV ++  I EV+      +G Q  
Sbjct: 314 VVKADTHTNSLIINAPPDVMGDLEEIITQLDIS-RAQVQVEAIIVEVQDADGLALGVQWF 372

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-----DFSVKGVLDRFSFETVLHALERATAIRTLA 273
                     +  A       S           +       ++  + +AL+  +    LA
Sbjct: 373 NKNGGGTQFPAADAPVSNLIGSTVAETLSKANGLAAGFYHGNWAGLFNALQTNSQNNILA 432

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIG 329
            P++  +    A FT G      T S +T       SV     G+ L   P +     + 
Sbjct: 433 TPSIVTLDNMEAEFTVGQDVPILTGSQTTSGDGVFNSVDRKSVGIKLKVKPQINKGDSVL 492

Query: 330 LRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           + I+ EVS      +   +  ++  R    TV + SG T+V+ GLL     +++  +P+L
Sbjct: 493 MEIEQEVSSVAEQSSVDPLGATFNTRLVKNTVLVESGKTVVVGGLLDTTHNKVESSVPVL 552

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            KIP+LGALFR +   + +  + +   P +++
Sbjct: 553 GKIPLLGALFRYTTDKQSKRNLMLFIRPTIIR 584


>gi|241664484|ref|YP_002982844.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
 gi|240866511|gb|ACS64172.1| type IV pilus secretin PilQ [Ralstonia pickettii 12D]
          Length = 721

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
            QV ++  I E      + +G +      ++G                           F
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L    +V++  +G+   +  +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 706 LVFLTPRVL 714


>gi|240114943|ref|ZP_04729005.1| PilQ [Neisseria gonorrhoeae PID18]
 gi|240122781|ref|ZP_04735737.1| PilQ [Neisseria gonorrhoeae PID332]
 gi|260441241|ref|ZP_05795057.1| PilQ [Neisseria gonorrhoeae DGI2]
 gi|268600608|ref|ZP_06134775.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268681392|ref|ZP_06148254.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291044580|ref|ZP_06570289.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
 gi|268584739|gb|EEZ49415.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID18]
 gi|268621676|gb|EEZ54076.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae PID332]
 gi|291011474|gb|EFE03470.1| type IV pilus assembly protein PilQ [Neisseria gonorrhoeae DGI2]
          Length = 731

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 102/259 (39%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 524

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644

Query: 343 VNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  + +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 645 ASGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 705 GKKTDRRELLIFITPRIID 723


>gi|312972346|ref|ZP_07786520.1| transport protein hofQ [Escherichia coli 1827-70]
 gi|310334723|gb|EFQ00928.1| transport protein hofQ [Escherichia coli 1827-70]
          Length = 386

 Score =  181 bits (458), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGNDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|187930316|ref|YP_001900803.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
 gi|187727206|gb|ACD28371.1| type IV pilus secretin PilQ [Ralstonia pickettii 12J]
          Length = 721

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 96/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
            QV ++  I E      + +G +      ++G                           F
Sbjct: 469 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPITQGATWDNSPAISF 528

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 529 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIVSSPRVVTADNIKALIEQG 588

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G I L    +V++  +G+   +  +
Sbjct: 589 TEIPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNIFLD--VDVNKDSVGIQTTNGFA 645

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++      TE+
Sbjct: 646 IDTKHVQTQVLVENGGTVVIGGIYTQNERTDINKVPLLGDIPVLGNLFKSTSKINNRTEL 705

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 706 LVFLTPRVL 714


>gi|77919728|ref|YP_357543.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
 gi|77545811|gb|ABA89373.1| type IV pilus biogenesis protein PilQ [Pelobacter carbinolicus DSM
           2380]
          Length = 874

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 96/243 (39%), Gaps = 18/243 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFGGKFVSEG--- 242
            QV ++  I E      + +G    I+           +  S        G  VS G   
Sbjct: 634 RQVLIEARIVEASATFSRDLGVNWGISYQHNPGSDVEGNDASIGMGGTLVGIPVSPGEVS 693

Query: 243 ----GDFSVKGVL-DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  +   V  D+   +  L ALE++   R ++ P ++ ++G+ A    G +  Y +
Sbjct: 694 SGIVSGLTFGQVGVDKTVLDLRLAALEQSGHGRIVSTPRVSTLNGEEAEVAQGTEIPYLS 753

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
           V  S   T        + L  TP +   G + L I+ +           + P+   ++A 
Sbjct: 754 V--SDDGTKTEFKKAELSLKVTPEINPDGSVILEIEAKNDSRGANTGLSEAPAIDTKRAT 811

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V +  G T V+ G+   D  +   G+P L  +PILG LF++   + E  E+ +  TP 
Sbjct: 812 TKVLVKDGETTVIGGIFIQDKSESDSGVPWLMNVPILGHLFKSKSVSEERRELLVFITPR 871

Query: 418 LVK 420
           ++ 
Sbjct: 872 ILD 874


>gi|300903573|ref|ZP_07121495.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301305534|ref|ZP_07211626.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|300404446|gb|EFJ87984.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300839229|gb|EFK66989.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|315255908|gb|EFU35876.1| general secretion pathway protein D [Escherichia coli MS 85-1]
          Length = 650

 Score =  180 bits (457), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 106/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-HAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|309785870|ref|ZP_07680501.1| transport protein hofQ [Shigella dysenteriae 1617]
 gi|308926990|gb|EFP72466.1| transport protein hofQ [Shigella dysenteriae 1617]
          Length = 267

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 113/252 (44%), Gaps = 6/252 (2%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +          
Sbjct: 14  DNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQQAGGVGQVT 72

Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             G           V    G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 73  TLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 132

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G+
Sbjct: 133 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGE 192

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E 
Sbjct: 193 VLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDER 252

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 253 RELVVFITPRLV 264


>gi|325498932|gb|EGC96791.1| outer membrane porin HofQ [Escherichia fergusonii ECD227]
          Length = 385

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 112/252 (44%), Gaps = 6/252 (2%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            N+ A ++ +  ++ +++    QV L   I  +    L+++G + +   +          
Sbjct: 132 DNKTALAALEHWISEMDVP-VGQVELAAHIVTINEKSLRELGVKWTAGEAQQAGKVGQVT 190

Query: 233 DFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                         V    G ++    +  L ALE+   +  +A P L A   Q AS   
Sbjct: 191 TLSSDLAVATATTQVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQ 250

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGD 347
           G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+  + G+
Sbjct: 251 GSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQQGRIRLKLHISQNVPGQVLQQSDGE 310

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           + +   ++ +T VE+ SG T+ L G+     +  K+ IPLL  IP LG LF +     E 
Sbjct: 311 VLTIDKQEIETQVEVKSGETLALGGIFSRKNKTGKDSIPLLGDIPWLGQLFSHDGKENER 370

Query: 408 TEIFIAATPFLV 419
            E+ +  TP LV
Sbjct: 371 RELVVFITPRLV 382


>gi|315125412|ref|YP_004067415.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
 gi|315013925|gb|ADT67263.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas sp. SM9913]
          Length = 696

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 118/307 (38%), Gaps = 33/307 (10%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           +++     +  +   G V   Q +   +               +  S ++++  L+I  +
Sbjct: 398 ADLLKTDTNSIITARGSVSVDQRTNTLLM---------KDTAKSIESVRRMVETLDIPVK 448

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFAAD 233
            QV ++  +  VR ++ + +G +                        G+    S     +
Sbjct: 449 -QVVIEARMVTVRDNVTEDLGVRWGFSDQQGSDGVSGTLEGAETISNGNIPSLSDRLNVN 507

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 S      +  + +    +  L ALE       +A P +TA + Q A    G + 
Sbjct: 508 LPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGTEI 567

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SY 351
            Y   +SS GAT+V+     + L  TP +    ++ L +          V  G  P  + 
Sbjct: 568 PYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAVAI 626

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T V + +G T+VL G+ +  I    + +PLL  +P +G LF+++    E+ E+ 
Sbjct: 627 DTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDLPYVGRLFKSTSEFNEKRELL 686

Query: 412 IAATPFL 418
           I  TP +
Sbjct: 687 IFVTPKI 693


>gi|90023220|ref|YP_529047.1| helix-turn-helix, AraC type [Saccharophagus degradans 2-40]
 gi|89952820|gb|ABD82835.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 666

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/459 (18%), Positives = 159/459 (34%), Gaps = 60/459 (13%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L    P  + L    E+N  V++ +   I + + +   ++   +    V       ++ 
Sbjct: 151 VLRPLVPQHSHLSSYTESNVIVVSDTAPNIARLRDVIERIDTAALPTTEVVPLKYADAED 210

Query: 75  TKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEMTL-R 128
             A +           G+           ++    +   +L+ + +  +    L   L R
Sbjct: 211 LVATLTKLDR------GEKQSSTPVNQLQIVADKRNNSVLLSGEDIQRKRAKDLIRKLDR 264

Query: 129 RFIADSNIRVEMVS------DTVVLHGMVRTIQDSQ------RAVELSETFLSQSGRNQY 176
             +   N+RV  ++          L  +V+ +Q  Q         + +     +      
Sbjct: 265 PPVQMGNVRVVYLNYANAKDVAATLSKVVQNMQQMQPGGKDKGGKDGATVEADEDTNALL 324

Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S   + +LL I         QV ++  I ++  D  K++G Q   +  ++G     +
Sbjct: 325 LTGSGDMLNSLLTIVERLDIKRAQVLVEAIIVDINVDANKELGVQWMFSNENNGTFGGSS 384

Query: 232 ADFG----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
              G                      G   + G    V G     +F  +L AL+ ++  
Sbjct: 385 QGDGSLGSLATGTLGGGTDALTNLASGIAGNTGQLLGVAGNNGGENFIALLSALQTSSDA 444

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLHFTP 320
             L+ P+L  +  Q AS + G    ++T S              T++   D G+ L  TP
Sbjct: 445 NILSTPSLVTMDNQEASISVGQSVPFRTGSYSTTGTTGSVGNPFTTIQREDVGITLTVTP 504

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            V    +I L I  EVS     V           K +T +    G  ++L GL+++D+Q 
Sbjct: 505 HVNEGNKILLDISQEVSSISSSVAGSADLITNQSKIETQLLANDGQIVILGGLIQEDVQD 564

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               +PLL  IP+LG LF+       +  + +     +V
Sbjct: 565 GDTRVPLLGSIPLLGHLFKYQSTKFLKKNLMVFIRVKIV 603


>gi|256823455|ref|YP_003147418.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
 gi|256796994|gb|ACV27650.1| type IV pilus secretin PilQ [Kangiella koreensis DSM 16069]
          Length = 701

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 57/282 (20%), Positives = 108/282 (38%), Gaps = 21/282 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V T Q +   +                    ++++  L+I    QV ++  I     
Sbjct: 425 RGSVTTDQRTNTIL---------VQDVSTKIEDVRRLVAQLDIPVR-QVLIEARIVTADD 474

Query: 208 DILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
              + +G +  ++   +    +  F  +      +     S   + D    +  L ALE 
Sbjct: 475 GFARDLGSRFGVSDVMNSGEVNGDFNVNLPIANPAGSLGLSFARLQDGIVVDMELSALES 534

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 +A P +   + + A   +G +  Y   +SS GA +V   +  + L  TP +   
Sbjct: 535 ENRGEVVASPKVITANQKEAFIKAGEEIPYLQGASS-GAANVQFKEAVLELKVTPQITPD 593

Query: 326 GRIGLRIQTEVSE--------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           GR+ L +                 G  +   P+   ++  T V + +G TIVL G+ +  
Sbjct: 594 GRVILDLAITQDTRGENVIFTSPDGGGSSGAPAINTQEIGTQVLVDNGETIVLGGIFQHR 653

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               +  +PLL  IP+LG LF+N++    + E+ I  TP ++
Sbjct: 654 TTYDESKVPLLGDIPLLGWLFKNTQREDTKQELLIFVTPKII 695


>gi|170018373|ref|YP_001723327.1| outer membrane porin HofQ [Escherichia coli ATCC 8739]
 gi|169753301|gb|ACA76000.1| type IV pilus secretin PilQ [Escherichia coli ATCC 8739]
          Length = 386

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 128/319 (40%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEDERRELVVFITPRLV 383


>gi|307260659|ref|ZP_07542351.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869736|gb|EFN01521.1| hypothetical protein appser12_2340 [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 432

 Score =  180 bits (457), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + +  S K ++ L+       +Q+ ++  I  +  + L+++G +  I   ++G  K   +
Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214

Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   +      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKKILLDLVVTQNSPN 334

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    + +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF 
Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
           +S     + E+ I  TP++VK    +
Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420


>gi|289676481|ref|ZP_06497371.1| type II and III secretion system protein:NolW-like:NolW-like
           [Pseudomonas syringae pv. syringae FF5]
          Length = 701

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG               + 
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495

Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + + +                    +  V +    +  L A+E+      +++P +    
Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691


>gi|309703802|emb|CBJ03143.1| protein transport protein [Escherichia coli ETEC H10407]
          Length = 412

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 80/425 (18%), Positives = 155/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           + +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNNNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + +I ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++    +  L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP+ G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPLFGQLFRHDGKEDERRELVVFN 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|322418906|ref|YP_004198129.1| type IV pilus secretin PilQ [Geobacter sp. M18]
 gi|320125293|gb|ADW12853.1| type IV pilus secretin PilQ [Geobacter sp. M18]
          Length = 922

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 66/451 (14%), Positives = 157/451 (34%), Gaps = 56/451 (12%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKK-----ISIGLNKVIILQV-PVDV 66
           +  L  +  +  + P + +  AA +   +               +   + + L+    D+
Sbjct: 483 AAKLPPAPVAKPRAPEVADELAAPVRSDEAMTEVSGTDKRVPKKVYKGRRVTLEFSDADI 542

Query: 67  QDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + +       A+V   +     +     G  ++ L+     Q L++ +  +      +  
Sbjct: 543 RKIF---QLIAEVSNLN---FLISDDVTGTISIKLVNVPWDQALDVILDAKGLAMVQQGN 596

Query: 127 LRRFIA--------DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF--LSQSGRNQY 176
           + +           D  +  +  ++ ++         +     E++  F  L        
Sbjct: 597 IVQIKPRSKMQNQADEELAAKKAAERLMEMKTAVFEVNYASVGEVATQFNMLKSDRGIIT 656

Query: 177 ANSSSKKVMNLLNIAG--------------EDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
            +  + +V+                     E QV ++  I E      + +G Q +++  
Sbjct: 657 KDERTSRVIVKDIQTALDDMRALLKTLDAPEKQVMIEARIVEATSTFTRDLGVQWALSYK 716

Query: 223 SSGPSKSFAADFGGKFVSEGGD--------------FSVKGVLDRFSFETVLHALERATA 268
            S  S +        F                     S   +      +  + A      
Sbjct: 717 DSSASIANINSAETTFGGVVSTAGPGTSGSGGLGLGMSFGKLTSNVQLDMRIAAAATIGQ 776

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           ++ ++ P +  ++ ++A  + G    Y+T S+    T     +  + L  TP + + G +
Sbjct: 777 VKIISTPKVVTLNNKAAKISQGQSIPYQTTSAEG--TKTEFVEAALTLEVTPHITADGSV 834

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            ++I+   + P      G  P    ++A T + + +G T V+ G+  D   +   G+P L
Sbjct: 835 SMKIKASNNSP----GTGTPPPINKKEATTELVVSNGDTTVIGGIYVDSDTESDTGVPFL 890

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + IP+LG LF+++   + +TE+ I  TP +V
Sbjct: 891 ADIPLLGWLFKSNTKQKTKTELLIFITPKIV 921


>gi|212634883|ref|YP_002311408.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212556367|gb|ACJ28821.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 688

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 72/397 (18%), Positives = 139/397 (35%), Gaps = 59/397 (14%)

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            AD    +   + +     G   + L      Q L+L +  +     +E  +        
Sbjct: 294 IADY---NNFNLVVSDTVEGDITLRLDDVPWDQALDLILQTKGLDKRIEGNILMIAPSEE 350

Query: 136 IRVEMVSD----------------------------TVVLHGMVRTIQDSQRAVELSETF 167
           I +    +                             ++L G   ++  S+    ++   
Sbjct: 351 IAIRESQELKNRQEVKELAPLYSEYLQINYAKAADIAILLKGEDSSLLSSR--GSVAVDE 408

Query: 168 LSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
            + +   +    + + +  L+ +      QV ++  +  V+ D+ + +G +  +T     
Sbjct: 409 RTNTLLVKDTEETLESIYRLIEVLDIPIKQVLIEARMVTVKDDVAEDLGVRWGVTDQQGT 468

Query: 226 PSKSFA---------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
              S +                             +    FSV  + D    +  L ALE
Sbjct: 469 KGTSGSLEGANDIAAGILPSLNDRLNVNLPAAPVNATSIAFSVAKLADGTVLDLELSALE 528

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           +      +A P +   S Q A++   G  +    +SS+GAT+VT     + L  TP +  
Sbjct: 529 QENKGEIIASPRIMT-SNQKAAYIEQGVEIPYVEASSSGATTVTFKKAVLSLRVTPQITP 587

Query: 325 PGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             R+ L ++        V+    G+  S   ++  T V +  G TIVL G+ +  +    
Sbjct: 588 DNRVILDLEITQDSQGKVVATPTGEAVSIDTQRIGTQVLVDHGETIVLGGIYQQQLISRV 647

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +PLL  IP LG +FR++    E  E+ I  TP +V
Sbjct: 648 SKVPLLGDIPYLGFMFRSTSDKNERQELLIFVTPKIV 684


>gi|54310371|ref|YP_131391.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
 gi|46914812|emb|CAG21589.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           SS9]
          Length = 556

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 120/312 (38%), Gaps = 35/312 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  R+I  S +A  +    + ++    +   S SKK         + Q
Sbjct: 229 QLEKAVQAMIGSGEGRSIVVSPQASLISVRAYPNELREVKEFLSVSKK-------RLKRQ 281

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249
           V L+  I EV      Q G   S   SS G +         +A  GG  +S         
Sbjct: 282 VVLEAKIMEVTLSDGYQQGVNWSNITSSIGGTDIVFGRTGPSALPGGDAISALLGGQTNL 341

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
            +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T  S         
Sbjct: 342 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 401

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351
                  +T    G+ L  TP +   G + L +   V E V      D+ +         
Sbjct: 402 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKEIDLGATFGVYKLPL 461

Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    + +T
Sbjct: 462 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVKSKT 521

Query: 409 EIFIAATPFLVK 420
           E+ I   P +V 
Sbjct: 522 ELVILLKPTVVD 533


>gi|301382657|ref|ZP_07231075.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato Max13]
 gi|302060641|ref|ZP_07252182.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato K40]
 gi|302130950|ref|ZP_07256940.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|331016027|gb|EGH96083.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 701

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 62/352 (17%), Positives = 134/352 (38%), Gaps = 30/352 (8%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +       ++   + IA L    R  +    +     +D   L   V
Sbjct: 345 RKVGSVLLVAPADEIAARERQELESLKQIAELAPLRRELL---QVNYAKAADIAKLFQSV 401

Query: 152 RTIQDS--QRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
            + +    +R     +   +     Q  +   +  ++++ L+I    QV ++  I E   
Sbjct: 402 TSAESKAEERGSITVDDRTNNIIAYQTQDRLDELRRIVSQLDIPVR-QVMIEARIVEANV 460

Query: 208 DILKQIGFQHSITGSSSGPS--------------KSFAADFGGKFV-------SEGGDFS 246
           D  KQ+G +   + ++S                  +  A+                    
Sbjct: 461 DYNKQLGVRWGGSTNTSRNGKWTTYGLDDNGDEGGNTNANLTSNIPFVDLGAADATTGIG 520

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V +    +  L A+E+      +++P +     ++A    G +  Y+   SS+GAT+
Sbjct: 521 LGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPYQES-SSSGATT 579

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V+  +  + L  TP +    RI + ++    EP        +P  +  + +  V +  G 
Sbjct: 580 VSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGE 639

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TIV+ G+  +   ++ + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 640 TIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 691


>gi|330977147|gb|EGH77105.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aptata str. DSM 50252]
          Length = 701

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------SK 228
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG               + 
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGNRKWTTYGLDNNGDEAG 495

Query: 229 SFAADFGGKFV-------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + + +                    +  V +    +  L A+E+      +++P +    
Sbjct: 496 NTSGNLTPNVPFVDLGAAGATSGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691


>gi|150260167|ref|ZP_01916895.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165925049|ref|ZP_02220881.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937283|ref|ZP_02225847.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167419065|ref|ZP_02310818.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466632|ref|ZP_02331336.1| general secretion pathway protein D [Yersinia pestis FV-1]
 gi|218927995|ref|YP_002345870.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|229840719|ref|ZP_04460878.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842725|ref|ZP_04462879.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|115346606|emb|CAL19488.1| general secretion pathway protein D [Yersinia pestis CO92]
 gi|149289575|gb|EDM39652.1| general secretion pathway protein D [Yersinia pestis CA88-4125]
 gi|165914757|gb|EDR33370.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165923249|gb|EDR40400.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166963059|gb|EDR59080.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|229690205|gb|EEO82260.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229697085|gb|EEO87132.1| general secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 640

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +     +  +V+  L+I    QV ++  I E +      +G +     S        +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383

Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   +        +     + +++ +L AL   T    LA P++  +    A F  
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           G +      + +T       S++    GV+L   P +     + L I+ EVS        
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503

Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                   +  R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
              E++ + +   P +++      +  
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590


>gi|325275672|ref|ZP_08141565.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
 gi|324099192|gb|EGB97145.1| type IV pilus secretin PilQ [Pseudomonas sp. TJI-51]
          Length = 418

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 46/236 (19%), Positives = 98/236 (41%), Gaps = 2/236 (0%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L++    QV ++  I E   D  K +G +         P    +          G
Sbjct: 175 QLVAQLDVPVR-QVAIEARIVEANVDYEKALGVRWGSPLYGDNPLPGKSLFVDLGVERAG 233

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  +      +  L A+E++     +++P +     ++A    G +  Y+  + S 
Sbjct: 234 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETTKS- 292

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + +  V +
Sbjct: 293 GATSVSFREASLSLEVTPQITPDNKVIMAVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 352

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             G TIV+ G+       + + +P L  +P +G LFR      +++E+ +  TP +
Sbjct: 353 ADGETIVIGGVYSTSQNNVVDKVPFLGDLPYVGRLFRRDALQEKKSELLVFLTPRI 408


>gi|332702049|ref|ZP_08422137.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552198|gb|EGJ49242.1| type II and III secretion system protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 524

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 81/455 (17%), Positives = 147/455 (32%), Gaps = 70/455 (15%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR-- 85
           P  + +A  I     E    K  ++         +P  +  + + D   + V+    R  
Sbjct: 56  PSPKPHAPEITDIGSEGASAKPATVQR------SLPDTLVTLRLRDTEVSAVLRALGRLA 109

Query: 86  --TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR-----V 138
              + L     G+AN+ +      Q+    +         +  + R I+  +++      
Sbjct: 110 KVNLLLSPGVQGKANLDVRNASWSQVFEGLLKSHGLTWAWQGQVLRVISAEDLQREASVS 169

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM----NLLNIAG-- 192
             +   + L            A +L E                  V+    N L I    
Sbjct: 170 NAMGGNLALRQTSVVAVRYADAAKLKENLQPLMTTGPTGQPMGTLVVDEHNNALIIQAAP 229

Query: 193 ----------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                             Q+ LK  I E  +D  + +G Q      +SG   +  A  GG
Sbjct: 230 EESRRILRLVEQLDKPRAQILLKAHIVETTKDTARDLGVQWGGVYQTSGSGNNLFAIPGG 289

Query: 237 K--------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264
                                                     + G L     E  L AL+
Sbjct: 290 TNGRLEDNKWVYDSTLGTGIGGQGFGVNLPADLAAGGTQLGLMFGKLGGSILELQLSALQ 349

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
               +  L+ P+++ +  Q A FT  G+ +    +   G  +V   D  + L  TP V+ 
Sbjct: 350 ENGRVNILSSPSISTLDNQMA-FTENGERVPYVATDEEGDLNVKFEDAVLRLEITPHVID 408

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             ++ L+I     E          P    ++ +T + +  G T+V++GL +D      + 
Sbjct: 409 REQLKLKILVRKDEVDTSRTVQGNPFIIKKRTETVLVVDDGETVVISGLSRDFDSSRDQK 468

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P L  IP+LG LF+ +    E  E+ I  TP ++
Sbjct: 469 VPWLGDIPLLGRLFQRNVDKAEMEEVLIFITPHVL 503


>gi|77359203|ref|YP_338778.1| general secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76874114|emb|CAI85335.1| General secretion pathway protein D [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 688

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/396 (18%), Positives = 133/396 (33%), Gaps = 68/396 (17%)

Query: 88  YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMT-------LRRFIADSNIRV 138
           +L  K V  G+ N +++  +G+       LI+R    LE         L    A+  ++V
Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKAEDLVKV 290

Query: 139 ----------EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
                     +    +          + S  A   S + +           S + V+  L
Sbjct: 291 LQGVSKSLTDDTQGGSATKTRTRSNNETSIEAHPDSNSLI--ITAQPDTMRSLESVIERL 348

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------- 241
           +I    QV ++  I EV        G Q            +      G            
Sbjct: 349 DIR-RAQVLVEAIIIEVMEGDGINFGLQWISEQGGMLQFNNGTTVPVGALAVAAEQARDT 407

Query: 242 --------------------------------GGDFSVKGVLDRFSFETVLHALERATAI 269
                                           GG   +   + +  +  ++ A+   +  
Sbjct: 408 TVSKNIIGTESGTITQVDETTKGDYGPLASLLGGINGLAMGVIKNDWGAIVQAVSTDSNS 467

Query: 270 RTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             LA P++T +  + AS   G +           +++    +V   + G+ L  TP +  
Sbjct: 468 NILATPSITTMDNEEASILVGQEVPIITGSQTGSNNTNPFQTVERQEVGIKLKVTPQIND 527

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + L I+ EVS            S   R   TTV    GG +VL GL+ +D+Q+    
Sbjct: 528 GSAVQLTIEQEVSSVSGATAVD--ISVNKRSIKTTVMADDGGMVVLGGLIDEDVQESVSK 585

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +PLL  IPILG LF+++   R +  + +   P +++
Sbjct: 586 VPLLGDIPILGHLFKSTNTTRRKRNLIVFIRPTIIR 621


>gi|169634604|ref|YP_001708340.1| putative general secretion pathway protein [Acinetobacter baumannii
           SDF]
 gi|260556356|ref|ZP_05828575.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|169153396|emb|CAP02525.1| putative general secretion pathway protein [Acinetobacter
           baumannii]
 gi|260410411|gb|EEX03710.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 756

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 67/300 (22%), Positives = 110/300 (36%), Gaps = 45/300 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV      Q+G Q ++   +SG       + G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  TA   L+ P++ 
Sbjct: 441 AAGYLTGGAAGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500

Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +         T+V   D GV L   P +   G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T V    G T+VL GL+ DD++  ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIY 452
            LG LFR+   +  +  + +   P +V                  +D +     R N++Y
Sbjct: 621 YLGRLFRSDTRSNTKRNLLVFIHPTIV---------------GDANDVRRLSQQRYNQLY 665


>gi|126207688|ref|YP_001052913.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae L20]
 gi|165975656|ref|YP_001651249.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|190149472|ref|YP_001967997.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307258421|ref|ZP_07540162.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|126096480|gb|ABN73308.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|165875757|gb|ABY68805.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           3 str. JL03]
 gi|189914603|gb|ACE60855.1| type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306867605|gb|EFM99452.1| hypothetical protein appser11_2240 [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 432

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + +  S K ++ L+       +Q+ ++  I  +  + L+++G +  I   ++G  K   +
Sbjct: 155 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 214

Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 215 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 274

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   +      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 275 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 334

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    + +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF 
Sbjct: 335 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 394

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
           +S     + E+ I  TP++VK    +
Sbjct: 395 HSSDKISKRELVIFVTPYIVKNGQPQ 420


>gi|297537923|ref|YP_003673692.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297257270|gb|ADI29115.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 675

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 74/467 (15%), Positives = 156/467 (33%), Gaps = 73/467 (15%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E     I +    + +   I+  L+K I    P    ++ V      D        
Sbjct: 190 PVSLELRDVNIKVVFEALSRATGINFILDKDIK---PDTKANIFVKKARIEDAIEMVLSS 246

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + S  T+ +F          L  +    + +   L       +   ++  +   
Sbjct: 247 NALQKKILSENTVLVFP----STQQKLKDYQDLMIRSF-YLSNTTAKQVAALIKSMLKTK 301

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I V+   + +V+             + ++E  ++ +                     + 
Sbjct: 302 DIFVDDRLNMMVMRDTP-------EVIRIAEKLVAANDM------------------ADP 336

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           +V L++ + EV R  L+++G ++      +              V+     +   +    
Sbjct: 337 EVMLEIEVLEVSRSRLQELGVEYPNRIGVNSLIPITTVTSATGVVASSTVNTPTQLTLEG 396

Query: 255 SFET-----------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                           ++  +    +  L+ P +   + + A    G +    T +S+  
Sbjct: 397 LLNLSKGRFDVSPNPAVNFRKTTGDVNLLSNPRIRVRNNEKAKILVGDKVPVITTTSTAN 456

Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKAD 357
              + SV   D G+ L   P + +   + ++I  EVS      I  N   + +   R A+
Sbjct: 457 VGISESVQYVDVGLKLDVEPRITADNYVNIKIALEVSSLGERTITRNGATVYTIGTRDAN 516

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + L  G T VLAGL+ DD ++    +P L  IP++G LF N +  + +TEI +A TP 
Sbjct: 517 TILRLKDGETQVLAGLISDDERKNASKLPGLGDIPLIGRLFSNQQDQKNKTEIVLAITPR 576

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           ++  +A               +   ++      I    + +      
Sbjct: 577 IISNIA-----------RPSAEVSEYWSGTDAVINDKLQTTLPVTPA 612


>gi|77361631|ref|YP_341206.1| type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76876542|emb|CAI87764.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 696

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 118/309 (38%), Gaps = 48/309 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              ++ V+  ++T+++    ++I+  +R VE  +  +                       
Sbjct: 411 PRGSVSVDQRTNTLLMKDTAKSIESVRRMVETLDIPV----------------------- 447

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGSSSGPSKSFA 231
              QV ++  +  VR ++ + +G +                        G+    S    
Sbjct: 448 --KQVVIEARMVTVRDNVTEDLGVRWGFSDQQGTDGISGTLEGAENISNGNIPSLSDRLN 505

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            +      S      +  + +    +  L ALE       +A P +TA + Q A    G 
Sbjct: 506 VNLPVANPSASIGMHIAKLANGTLIDLELTALEEENKGEIIASPRITAANQQKARIEQGT 565

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS- 350
           +  Y   +SS GAT+V+     + L  TP +    ++ L +          V  G  P+ 
Sbjct: 566 EIPYVESASS-GATTVSFKKAVLSLEVTPHITPDNKVILNLIITQDTRGDTVQTGTGPAV 624

Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               ++ +T V + +G T+VL G+ +  I    + +PLL  IP +G LF+++    E+ E
Sbjct: 625 AIDTQQIETQVLVENGQTVVLGGIFQQQIINSTKKVPLLGDIPYIGRLFKSTSEFNEKRE 684

Query: 410 IFIAATPFL 418
           + I  TP +
Sbjct: 685 LLIFVTPKI 693


>gi|253701270|ref|YP_003022459.1| type IV pilus secretin PilQ [Geobacter sp. M21]
 gi|251776120|gb|ACT18701.1| type IV pilus secretin PilQ [Geobacter sp. M21]
          Length = 926

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 50/243 (20%), Positives = 98/243 (40%), Gaps = 20/243 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244
           A E QV ++  I E      + +G Q  ++      S +        F            
Sbjct: 689 APEKQVMIEARIVEATSTFTRDLGVQWGLSYRDGSASMAGINSVDTGFGGVVSAAGPGAT 748

Query: 245 --------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                    S   +      +  L A      ++ ++ P +  ++ ++A  + G    Y+
Sbjct: 749 GAGGLGLGMSFGKLTSNIKLDMRLAAAATIGQVKIISTPKVVTLNNKAAKISQGQSIPYQ 808

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           T S+    T     +  + L  TP + + G + ++I+   + P      G  P    ++A
Sbjct: 809 TTSAEG--TKTEFVEAALTLEVTPHITADGSVSMKIKASNNSP----GTGSPPPINKKEA 862

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + + +G T V+ G+  D   +   G+P LS IP+LG LF+++   + +TE+ I  TP
Sbjct: 863 TTELVVSNGDTTVIGGIYVDSETESDTGVPFLSDIPLLGWLFKSNAKQKTKTELLIFITP 922

Query: 417 FLV 419
            ++
Sbjct: 923 KII 925


>gi|330971735|gb|EGH71801.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae pv. aceris str. M302273PT]
          Length = 701

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 54/257 (21%), Positives = 108/257 (42%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG               A 
Sbjct: 437 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 495

Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + G    S                 +  V +    +  L A+E+      +++P +    
Sbjct: 496 NTGSSVTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 555

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP +    RI + ++    EP  
Sbjct: 556 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 614

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 615 LNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 674

Query: 402 RFNREETEIFIAATPFL 418
             +  ++E+ +  TP +
Sbjct: 675 VVSESKSELLVFLTPRI 691


>gi|283787974|ref|YP_003367839.1| fimbrial protein HofQ [Citrobacter rodentium ICC168]
 gi|282951428|emb|CBG91127.1| putative fimbrial protein HofQ [Citrobacter rodentium ICC168]
          Length = 412

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/428 (22%), Positives = 159/428 (37%), Gaps = 51/428 (11%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
               +A L P+    A  + +   E+   + +           +    +  LV  P  + 
Sbjct: 6   LAALIAVLHPVLAGKAQNVTLVVDEVPVAQVLQ---------ALAEQERRNLVVAPDVSG 56

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
           VV    R   +  K   Q    +    G  +   + +I    A+ +      +   N R 
Sbjct: 57  VVSLRLRD--VPWKQALQT---VASSAGLVLRQEEAIIHVHSANWQRDEAARLQAENARR 111

Query: 139 EMV----SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           E      +  + L            A EL++    Q   +   N +     N L I    
Sbjct: 112 EASLPLENRHITL--------HYADAAELAKA--GQKLLSARGNMTVDTRTNRLLIRDTP 161

Query: 195 ------------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                             QV L   I  +    L+++G + ++  + S  +    +  G 
Sbjct: 162 PTLTLLEQWAAQMDLPVGQVELAAHIVTINEKSLRELGVKWTLAEAQSTGAVGDVSTLGS 221

Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                     V    G +D    +  L ALE+   +  +A P L A   Q AS   G + 
Sbjct: 222 DLSVAAATTRVGFNIGRIDGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 281

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
            Y+  S  +GATSV   +  + +  TP VL  GRI L++    + P  V+    G++ + 
Sbjct: 282 PYQVSSGESGATSVEFKEAVLGMEVTPVVLQKGRIRLKLHISQNMPGQVLQQADGEVLAI 341

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ DT VE+ SG T+ L G+     ++ +E +PLL  IP LG LFR+     E  E+ 
Sbjct: 342 DKQEIDTQVEVKSGETLALGGIFSRKNKRGQESVPLLGDIPWLGQLFRHDGKENERRELV 401

Query: 412 IAATPFLV 419
           +  TP LV
Sbjct: 402 VFITPRLV 409


>gi|187931580|ref|YP_001891564.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187712489|gb|ACD30786.1| type IV pili secretin component [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 590

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 72/416 (17%), Positives = 156/416 (37%), Gaps = 34/416 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++++ S 
Sbjct: 180 PISISFKDASVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIILVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +   + +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSISYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
            I EV R    ++GF + +       + G     +        +     +  G       
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409

Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V 
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
             +  + L  TP +   G I + I    +                P  + R+  T V   
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584


>gi|149911025|ref|ZP_01899654.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
 gi|149805928|gb|EDM65914.1| putative MSHA biogenesis protein MshL [Moritella sp. PE36]
          Length = 532

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 63/243 (25%), Positives = 98/243 (40%), Gaps = 18/243 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V I EV  +   + G   ++  S+     SF            G       L  
Sbjct: 264 RQVLLEVKIMEVTLNDGYKQGIDWNVNNSNVAADSSFNFSITDITDLASGAGVF--TLAG 321

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302
             F   +  L+    +  L+ P +TA++ Q A    G    + T  SS            
Sbjct: 322 NDFSAAISLLKTQGDVNVLSSPRVTALNNQKAVIKVGSDEYFVTGYSSTKSTSSDDDSIE 381

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYR--VRKAD 357
               +T    G+ L  TP + S G + L +     EV++    V   ++P  +  VR+ D
Sbjct: 382 QDVELTPFFSGIALDVTPQIDSDGGVLLHVHPSIIEVTDSNKIVAGIELPLAKSDVRETD 441

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V+  SG  IV+ GL+K   + L   +P L  IP LG LF     + ++TE+ I   P 
Sbjct: 442 TVVKAKSGEIIVIGGLMKTANKDLVSKVPFLGDIPWLGELFTYRSQSVQKTELIILIKPI 501

Query: 418 LVK 420
           +V 
Sbjct: 502 VVD 504


>gi|22127080|ref|NP_670503.1| general secretion pathway protein D [Yersinia pestis KIM 10]
 gi|45442607|ref|NP_994146.1| general secretion pathway protein D [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108806450|ref|YP_650366.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|108813180|ref|YP_648947.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|145597997|ref|YP_001162073.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|153949658|ref|YP_001399937.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162421010|ref|YP_001607617.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|166010333|ref|ZP_02231231.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166212712|ref|ZP_02238747.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167399809|ref|ZP_02305327.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167425419|ref|ZP_02317172.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229837688|ref|ZP_04457848.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|229903625|ref|ZP_04518738.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|270487407|ref|ZP_06204481.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294503003|ref|YP_003567065.1| general secretion protein [Yersinia pestis Z176003]
 gi|21960134|gb|AAM86754.1|AE013921_5 putative general secretion protein [Yersinia pestis KIM 10]
 gi|45437472|gb|AAS63023.1| putative general secretion protein [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108776828|gb|ABG19347.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|108778363|gb|ABG12421.1| general secretion pathway protein D [Yersinia pestis Antiqua]
 gi|145209693|gb|ABP39100.1| general secretion pathway protein D [Yersinia pestis Pestoides F]
 gi|152961153|gb|ABS48614.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           31758]
 gi|162353825|gb|ABX87773.1| general secretion pathway protein D [Yersinia pestis Angola]
 gi|165990819|gb|EDR43120.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166206004|gb|EDR50484.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167050517|gb|EDR61925.1| general secretion pathway protein D [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055819|gb|EDR65603.1| general secretion pathway protein D [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229679395|gb|EEO75498.1| general secretion pathway protein D [Yersinia pestis Nepal516]
 gi|229704065|gb|EEO91077.1| general secretion pathway protein D [Yersinia pestis Pestoides A]
 gi|262361038|gb|ACY57759.1| general secretion protein [Yersinia pestis D106004]
 gi|262364982|gb|ACY61539.1| general secretion protein [Yersinia pestis D182038]
 gi|270335911|gb|EFA46688.1| general secretion pathway protein D [Yersinia pestis KIM D27]
 gi|294353462|gb|ADE63803.1| general secretion protein [Yersinia pestis Z176003]
 gi|320014111|gb|ADV97682.1| general secretion pathway protein D [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 640

 Score =  180 bits (456), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +     +  +V+  L+I    QV ++  I E +      +G +     S        +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383

Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   +        +     + +++ +L AL   T    LA P++  +    A F  
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           G +      + +T       S++    GV+L   P +     + L I+ EVS        
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503

Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                   +  R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
              E++ + +   P +++      +  
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590


>gi|156936449|ref|YP_001440365.1| outer membrane porin HofQ [Cronobacter sakazakii ATCC BAA-894]
 gi|156534703|gb|ABU79529.1| hypothetical protein ESA_04350 [Cronobacter sakazakii ATCC BAA-894]
          Length = 390

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/230 (25%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  + +  L+++G + S   +    +                   +    G +
Sbjct: 158 QVELAAHIVTINQQSLRELGVKWSTADADGPTTLYHPTTISADLAVANATTRLGFNIGRI 217

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    E  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 218 DGRMLEFELSALEQKQKVEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKE 277

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPT+   GRI L+++   + P   +    G++ +   ++ +T VE+  G T+ 
Sbjct: 278 AVLGMEVTPTIGQDGRIKLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLA 337

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +   +   E +P+L  IP+ G+LFR+   + E+ E+ +  TP ++
Sbjct: 338 LGGIFQQKNKAGNEQVPVLGNIPLFGSLFRHDGKDNEKRELVVFITPRII 387


>gi|253690245|ref|YP_003019435.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251756823|gb|ACT14899.1| type IV pilus secretin PilQ [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 424

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + L+++G    +   S+  +     +F      +    +       L
Sbjct: 190 QVQLAAHIVTISSEHLQELGVNWGLGEGSAANNALRLNNFNVGLPVDTPAINAGFHLARL 249

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 250 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 309

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +   + G+  +   ++  T V +  G TI
Sbjct: 310 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 369

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 370 VLGGIFQQQKKSSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 420


>gi|170023253|ref|YP_001719758.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
 gi|169749787|gb|ACA67305.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           YPIII]
          Length = 640

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 10/267 (3%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +     +  +V+  L+I    QV ++  I E +      +G +     S        +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383

Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   +        +     + +++ +L AL        LA P++  +    A F  
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNKNNNILATPSIVTLDNMEAEFNV 443

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           G +      + +T       S++    GV+L   P +     + L I+ EVS        
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503

Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                   +  R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
              E++ + +   P +++      +  
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590


>gi|163802236|ref|ZP_02196131.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
 gi|159174041|gb|EDP58851.1| general secretion pathway protein D precursor [Vibrio sp. AND4]
          Length = 675

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 71/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
            I +   +  ++ ++   ++ V    D     V + +      + +        N     
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKDIELVELRNASAAEMVRIVEALNKTTNQKSTP 220

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280

Query: 146 VLHGMVRTIQDSQRA------------VELSETFLSQSGRNQYANS---SSKKVMNLLNI 190
           VL G+   +Q  ++A            V ++    + S           + + V+  L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKNTSSAQRGEVVIASHEATNSLVLTAPPDIMMALQDVIAQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230
               QV ++  I E+       +G Q         I   ++G S                
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGASIGNVMVGLEEAKDQTR 399

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                             + D+     + GG       L    +  ++ A+   +    L
Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSLVMGDWTALISAVSSDSNSNIL 459

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           + P++T +    ASF  G +    T      ++     +V   + G+ L   P +     
Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTSGANNDNPFQTVDRKEVGIKLKVVPQINEGDS 519

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PL
Sbjct: 520 VHLDIEQEVSNVLGAEGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERAMESESKVPL 578

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IP++G LF+++    ++  + +   P +++
Sbjct: 579 LGDIPVIGQLFKSTSTQTQKRNLMVFIKPTIIR 611


>gi|51597379|ref|YP_071570.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186896487|ref|YP_001873599.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
 gi|51590661|emb|CAH22303.1| general secretion pathway protein D [Yersinia pseudotuberculosis IP
           32953]
 gi|186699513|gb|ACC90142.1| general secretion pathway protein D [Yersinia pseudotuberculosis
           PB1/+]
          Length = 640

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 98/267 (36%), Gaps = 10/267 (3%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +     +  +V+  L+I    QV ++  I E +      +G +     S        +
Sbjct: 325 TADPDMMLALGEVIEKLDIR-RAQVLVEAIIVETQNGEGINLGVKWENKRSDDINFIKNS 383

Query: 232 ADF--GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   +        +     + +++ +L AL   T    LA P++  +    A F  
Sbjct: 384 DGLLNNNGWGIATTITGLTAGFYKGNWDVLLSALSTNTNNNILATPSIVTLDNMEAEFNV 443

Query: 290 GGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           G +      + +T       S++    GV+L   P +     + L I+ EVS        
Sbjct: 444 GQEVPVLISTQTTTTDKVYNSISRQSIGVMLKVKPQINKGDSVLLEIRQEVSSIADSSTV 503

Query: 346 GD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                   +  R  +  V + SG T+V+ GLL      +   +P L  +P++G LFR ++
Sbjct: 504 NTHNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKSSTIVNKVPFLGDLPLIGWLFRQTK 563

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSR 429
              E++ + +   P +++      +  
Sbjct: 564 EKVEKSNLILFIKPTILRESDDYSVVT 590


>gi|332090365|gb|EGI95463.1| transport protein hofQ [Shigella boydii 3594-74]
          Length = 385

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 65  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 124

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 125 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 183

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 184 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 243

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 244 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 303

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 304 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 363

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 364 DGKEYERRELVVFITPRLV 382


>gi|313672368|ref|YP_004050479.1| type ii and iii secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939124|gb|ADR18316.1| type II and III secretion system protein [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 425

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/252 (23%), Positives = 108/252 (42%), Gaps = 24/252 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF--------------------AA 232
             Q+ ++  I    ++  K +G Q  +  +                             +
Sbjct: 170 SQQIMIEAKIVRTTKNAGKDLGIQWGVNVNDRTSKNFPYSVQVGAGADPNRNYIVNLPIS 229

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D     +  G   ++    + F     L+ALE     + +  P +  ++ Q A   SG +
Sbjct: 230 DVARAGIGAGVGVTLGNFNNTFVLNAKLNALETKGEAKVVHSPKILTMNNQKAKLESGEE 289

Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
                   + +++T    +   +   VL  TP +L+ G I L +  E+SE     +  ++
Sbjct: 290 IRFRETKTSTTTTTQEIEIQKDEAKTVLDITPQILNDGNILLNLAVELSEFDWTKSVDNI 349

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+    KA+T V L  G T+++ GL K+++ + +  +PLLSKIP+LGALFRN     E  
Sbjct: 350 PAKNKNKAETQVILKDGETLIIGGLKKENVFKNEAAVPLLSKIPLLGALFRNKSSGEELN 409

Query: 409 EIFIAATPFLVK 420
           E+ I  TP +++
Sbjct: 410 ELLIFVTPKIMR 421


>gi|225850118|ref|YP_002730352.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
 gi|225646446|gb|ACO04632.1| fimbrial assembly protein PilQ [Persephonella marina EX-H1]
          Length = 608

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 54/244 (22%), Positives = 91/244 (37%), Gaps = 15/244 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
               Q+ ++  I ++     + +G Q     S    +  +    G               
Sbjct: 363 KRPYQIAIEARIVQIESSYKRDLGIQWGFAASGGAGNIGYGVTTGTATGYMFDFPAGNVD 422

Query: 239 VSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           V +G   S+  V     S +  L ALE+    R L+ P +  I G+ A  + G +  Y T
Sbjct: 423 VGKGASMSIGIVRGLTTSLDIQLSALEQIGKSRILSRPKVITIDGEGAEISQGIEVPYST 482

Query: 298 --VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
              +       V      + L+  P     G I + I+     P  G      P    + 
Sbjct: 483 FGAAGGAAIARVQFKKALLKLNVIPRTTLDGNIIMNIELTQDVPDFGRAVNGQPPINTKS 542

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             + V    G TIV+ G+L+   Q+ + G+P L  +P+ G LF+N   N    E+ I  T
Sbjct: 543 ITSKVIAKDGTTIVIGGILEKTEQETENGVPGLRNVPLFGWLFKNKGINTTNKELLIFIT 602

Query: 416 PFLV 419
           P ++
Sbjct: 603 PKII 606


>gi|315125823|ref|YP_004067826.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
 gi|315014337|gb|ADT67675.1| general secretion pathway protein D [Pseudoalteromonas sp. SM9913]
          Length = 688

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S + V+  L+I    QV ++  I EV        G Q            +  
Sbjct: 332 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNFGLQWISEQGGMLQFNNGT 390

Query: 232 ADFGGKFVSE---------------------------------------GGDFSVKGVLD 252
               G                                            GG   +   + 
Sbjct: 391 TVPVGSLAVAAEQARDKTVTKNIIGTESGTVTKYDETTEGDYGPLASLLGGINGLAMGVI 450

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307
           +  +  ++ A+   T    LA P++T +  + AS   G +    T S +         +V
Sbjct: 451 KNDWGAIVQAVSTDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNENPFQTV 510

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ L  TP +     + L I+ EVS            S   R   TTV    GG 
Sbjct: 511 ERQEVGIKLKVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 568

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +VL GL+ +D+Q+    +PLL  IPILG LF+++   + +  + +   P +++
Sbjct: 569 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFKSTNTTKRKRNLIVFIRPTIIR 621


>gi|209696322|ref|YP_002264253.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
 gi|208010276|emb|CAQ80608.1| general secretion pathway protein D [Aliivibrio salmonicida
           LFI1238]
          Length = 675

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 46/301 (15%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----- 218
           ++T             + K V+  L+I    QV ++  I E+       +G Q       
Sbjct: 309 ADTNAIIITAPPDIMRAVKDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLKTG 367

Query: 219 --ITGSSSGPSKSFA--------------------------------ADFGGKFVSEGGD 244
             I  S++G S                                     D+G    + GG 
Sbjct: 368 AMIQYSNTGASIGGTMVGLEEAKDSTTTTAVYDSDDNFQRNETTTEEGDYGALASALGGV 427

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVS 299
                 +    +  ++ A+   +    L+ P++T +    ASF  G +           +
Sbjct: 428 QGAAVSIMMGDWTALITAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSN 487

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +     +V   + G+ L   P +     + L I+ EVS  +    A D+  +  R+  T+
Sbjct: 488 NENPFQTVERKEVGIKLKVVPQINEGNSVRLDIEQEVSNVLGANGAVDV-RFAKRQLSTS 546

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G  +VL GL+ +   + +  +P L  IPILG LF+++    E+  + I   P ++
Sbjct: 547 VMVEDGKMLVLGGLIDERAMESESKVPFLGDIPILGYLFKSTSTQVEKKNLMIFIKPTII 606

Query: 420 K 420
           +
Sbjct: 607 R 607


>gi|307247187|ref|ZP_07529238.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|307249414|ref|ZP_07531405.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251732|ref|ZP_07533636.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253966|ref|ZP_07535818.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256227|ref|ZP_07538014.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307262791|ref|ZP_07544418.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|306856325|gb|EFM88477.1| hypothetical protein appser2_1870 [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|306858556|gb|EFM90621.1| hypothetical protein appser4_2250 [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306860818|gb|EFM92827.1| hypothetical protein appser6_2530 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863170|gb|EFM95112.1| hypothetical protein appser9_2240 [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865408|gb|EFM97304.1| hypothetical protein appser10_2320 [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306871936|gb|EFN03653.1| hypothetical protein appser13_2170 [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 429

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + +  S K ++ L+       +Q+ ++  I  +  + L+++G +  I   ++G  K   +
Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211

Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   +      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 272 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    + +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF 
Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
           +S     + E+ I  TP++VK    +
Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417


>gi|91224969|ref|ZP_01260228.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
 gi|91190215|gb|EAS76485.1| general secretion pathway protein D precursor [Vibrio alginolyticus
           12G01]
          Length = 672

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 70/383 (18%), Positives = 141/383 (36%), Gaps = 62/383 (16%)

Query: 96  QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           + N ILI  D K    L  ++ + D+        R +   N + E + D  VL G+   +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289

Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
           Q  ++A           V ++    + S           + + V++ L+I    QV ++ 
Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348

Query: 201 TIAEVRRDILKQIGFQHSI--------------------------------------TGS 222
            I E+       +G Q                                          G 
Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNSNGE 408

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +    + + D+     +  G       +    +  ++ A+   +    L+ P++T +  
Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSITVMDN 468

Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS
Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG L
Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+++    E+  + +   P +++
Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610


>gi|238750896|ref|ZP_04612393.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
 gi|238710810|gb|EEQ03031.1| Type II/III secretion system protein [Yersinia rohdei ATCC 43380]
          Length = 316

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 73/321 (22%), Positives = 132/321 (41%), Gaps = 29/321 (9%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
           S    AD  +    ++ ++ KN G A  IL   + K +    +++   I      ++   
Sbjct: 2   SAAAIADYELVGKNSVIVYAKNEGVAEFILFDQNHKPITKSVVMVNNIITLATKRIQAEY 61

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS-----SSKKVMN 186
             S I +  + ++ +L G V + +     V +    +         N          ++N
Sbjct: 62  PGSIIDISKIGNSYILTGTVESEEARDTIVNIVGEAIGSKKNKGSDNQYINTNDYPGIVN 121

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            + +   +QV +K+TIAEV +D  + IG   S  G++ G  + F                
Sbjct: 122 KIKLPQSNQVNVKLTIAEVTKDFTENIGINWSTIGNNVGAFQFF---------------- 165

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +     T++HA+      R LAEP L+ +SG++ASF  GG+    + S +     
Sbjct: 166 ---QFNAKGISTLVHAINDDAIARVLAEPNLSVLSGETASFLVGGEIPIASTSQNG--VK 220

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELP 363
           +   ++G+ L+    V    RI + +  EVS              PS R RKA TT+EL 
Sbjct: 221 IDYKEFGIKLNIGAKVNDKKRIRIMLNEEVSSIGKSFNVTGGDSYPSLRTRKAATTLELG 280

Query: 364 SGGTIVLAGLLKDDIQQLKEG 384
            G + +L GL+  + ++  + 
Sbjct: 281 DGESFILGGLISSNERESLKK 301


>gi|240079992|ref|ZP_04724535.1| PilQ [Neisseria gonorrhoeae FA19]
 gi|268596134|ref|ZP_06130301.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
 gi|268549922|gb|EEZ44941.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           gonorrhoeae FA19]
          Length = 731

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 101/259 (38%), Gaps = 22/259 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 466 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFRG 524

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 525 GDKWEAQTKINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 584

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI- 341
           A   SG +  +   ++S G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 585 AKIESGYEIPFTVTTASGGGNSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 644

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              +  +     +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+  
Sbjct: 645 ASGSNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLGDIPVIGNLFKTR 704

Query: 402 RFNREETEIFIAATPFLVK 420
               +  E+ I  TP ++ 
Sbjct: 705 GKKTDRRELLIFITPRIID 723


>gi|213622639|ref|ZP_03375422.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 250

 Score =  179 bits (455), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 64/248 (25%), Positives = 110/248 (44%), Gaps = 6/248 (2%)

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
               + K ++ +++    QV L   I  +    L+++G + ++  ++   +         
Sbjct: 1   GPGGAGKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWTLADATQAGAVGDVTTLSS 59

Query: 237 KFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                     V    G ++    +  L ALE+   +  +A P L A   Q AS   G + 
Sbjct: 60  DLSVAAATSRVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEI 119

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPSY 351
            Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ + 
Sbjct: 120 PYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAI 179

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++ +T VE+ SG T+ L G+     +   + +PLL  IP LG LFR+     E  E+ 
Sbjct: 180 DKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWLGQLFRHDGKEDERRELV 239

Query: 412 IAATPFLV 419
           +  TP LV
Sbjct: 240 VFITPRLV 247


>gi|320186741|gb|EFW61464.1| Type IV pilus biogenesis protein PilQ [Shigella flexneri CDC
           796-83]
          Length = 386

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 69/319 (21%), Positives = 127/319 (39%), Gaps = 6/319 (1%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
                  + +  ++           + + +I ++      +     + +           
Sbjct: 66  HSIAWQNNNIARQEAEQARAQANLPLENRSITLQYADAGELAKAGEKLLSAKGSMTVDKR 125

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T       N+ A S+ ++ +  +++    QV L   I  +    L+++G + ++  +   
Sbjct: 126 TNRLLLRDNKTALSALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHA 184

Query: 226 PSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                    G           V    G ++    +  L ALE+   +  +A P L A   
Sbjct: 185 GGVGQVTTLGSDLSVATATTHVGFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHL 244

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPV 340
           Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V
Sbjct: 245 QPASIKQGSEIPYQVSSGESGATSVEFKEAVLGIEVTPTVLQKGRIRLKLHISQNVPGQV 304

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G++ +   ++ +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+
Sbjct: 305 LQQADGEVLAIDKQEIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRH 364

Query: 401 SRFNREETEIFIAATPFLV 419
                E  E+ +  TP LV
Sbjct: 365 DGKEYERRELVVFITPRLV 383


>gi|94500410|ref|ZP_01306942.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
 gi|94427445|gb|EAT12423.1| type 4 fimbrial biogenesis protein PilQ [Oceanobacter sp. RED65]
          Length = 696

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 33/269 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           + +N+L++  + QV ++  I     ++ + +G +          S +     G   VS  
Sbjct: 428 RAINILDVPVK-QVLIEARIVVASTNVGENLGIRWGGGYGVLDGSDNLTLGGGLDTVSRF 486

Query: 241 ---------------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                          F+     D +  +  L ALE       ++
Sbjct: 487 NDGITAGSPVRDISETDSVINFPIAAANASTFAFGLSTDEYVLDLELSALESDGKAEIIS 546

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P +    GQ+A   +G +  Y   +S++GATS+   +  + L  TP +    RI + + 
Sbjct: 547 QPRVITADGQTARIQAGTEIPY-EQASASGATSIVFKEAVLKLEATPQITPDDRILMDLI 605

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
             +++  +G     +PS    + +T V + +G TIVL G+ + +     +  P    +P+
Sbjct: 606 --INKDAVGEIFNSIPSIDTNELETQVLVNNGETIVLGGIFQSEDITQVDKTPFFGDLPV 663

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPV 422
           +G LFR +    +++E+ I  TP LVK V
Sbjct: 664 IGQLFRRTTRTEDKSELLIFITPRLVKDV 692


>gi|294670682|ref|ZP_06735557.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307570|gb|EFE48813.1| hypothetical protein NEIELOOT_02404 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 711

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 49/277 (17%), Positives = 106/277 (38%), Gaps = 41/277 (14%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           +K++  L++    QV ++  I E      +Q+G +    GS+   S              
Sbjct: 430 EKLIAELDVPAR-QVMVEARIVEAEDGFSRQLGVKFGYAGSNGKNSWGSNWANAGANRNS 488

Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                        +      +     ++   L   +    L A 
Sbjct: 489 YVDKQRTLANWSRNPSQDIPALPAWTVDPNVNLPIAAATSSIALVHALSSGALGLELSAQ 548

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +    ++ ++ P +     + A   +G +  Y+  SSS   ++ +     + +  TP + 
Sbjct: 549 QAQNKLKIVSTPRVLTQDRKEAIIEAGTEVPYQEASSSGATST-SFKKAVLGMTVTPNIT 607

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G+I + I+    + V        P    ++ +T V +  GGT++L G+ +++  +   
Sbjct: 608 PDGQIIMDIKINK-DSVNSDCRATEPCINTQRLNTNVMVEDGGTLILGGIYQEENSEGVS 666

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +PLL  IP++G LF++   + ++TE+ I  TP +V 
Sbjct: 667 KVPLLGDIPVVGNLFKSKTRSDKKTELLIFITPRIVD 703


>gi|260599692|ref|YP_003212263.1| outer membrane porin HofQ [Cronobacter turicensis z3032]
 gi|260218869|emb|CBA34224.1| Protein transport protein hofQ [Cronobacter turicensis z3032]
          Length = 390

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 16/333 (4%)

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVEMVSDTVVLHGMVRTIQ 155
              +   +       E+         R+       +A   + +     T +  G+     
Sbjct: 56  WRKESNILRVYPETWEQQTQAQREAARQQQERSLPLASETVTLRYAEATELAAGLAALGD 115

Query: 156 DSQR----AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
                         T          A    ++ +  ++I    QV L   I  + +  L+
Sbjct: 116 KLMTPRGSITVDKRTNRLLIRDTASALRQVQEWVAKMDIP-VGQVELAAHIVTINQQSLR 174

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATA 268
           ++G + S   +                        +    G +D    E  L ALE+   
Sbjct: 175 ELGVKWSTADAEGATKLYHPTTVSADLAVANATTRLGFNIGRIDGRMLEFELSALEQKQK 234

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           +  +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPT+   GRI
Sbjct: 235 VEIIASPRLLAAHQQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTIGQGGRI 294

Query: 329 GLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            L+++   + P   +    G++ +   ++ +T VE+  G T+ L G+ +   +   E +P
Sbjct: 295 RLKLRISQNMPGQALQQADGEVLAIDKQEIETQVEVKDGETLALGGIFQQKNKTGNEQVP 354

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L  IP+LG+LFR+   ++E+ E+ +  TP ++
Sbjct: 355 VLGNIPLLGSLFRHDGKDKEKRELVVFITPRII 387


>gi|304310058|ref|YP_003809656.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
 gi|301795791|emb|CBL43990.1| General secretion pathway D protein, outer membrane secretin [gamma
           proteobacterium HdN1]
          Length = 721

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 69/389 (17%), Positives = 128/389 (32%), Gaps = 46/389 (11%)

Query: 77  ADVVVHSPRTMYLFGKNVGQ-ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
           AD V  S     L G   GQ          G Q  +         +   +     +  S 
Sbjct: 288 ADAVKISE---VLRGIVTGQATTPTSTTAGGMQTASRTPGSSFGNSSAGLGGNSSMGMSG 344

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193
             V   +      G   T   +      ++  L+        +   +   ++  L++   
Sbjct: 345 AGVSSSTSR--QRGT-STPIQAGNITIQADDTLNALVVRASPSDMGEIRSLIKQLDVR-R 400

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------- 243
            QV ++  I EV       +G Q      +     +  ++ G    +  G          
Sbjct: 401 AQVLIEAAIVEVTGSAGNSLGVQWGAANENRVVGGTNFSNVGNSISALLGAALSSSGSDS 460

Query: 244 --------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                                   +    +  F  +L A+  A+    L+ P++  +  +
Sbjct: 461 TGTTSSTTTTMPTLSNGITLGGGHRNSAGKVDFGLILQAVNTASNTNVLSTPSIMTLDNE 520

Query: 284 SASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            A    G    + T +      +    +V   D G+ L   P V +   I LR+  E S 
Sbjct: 521 EAEILVGQNVPFITGNQLSYSGTNPFQTVERKDVGLNLKVIPQVNAGDTISLRVTQEASS 580

Query: 339 PVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                N          R  +TT+    G  IVL GL++D +    + +PLL  IP++GAL
Sbjct: 581 IADSSNVKTTDVITNKRLINTTILASDGQVIVLGGLMEDTLSDAVQKVPLLGDIPLIGAL 640

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
           FR++   +E+  + +   P +++  A  +
Sbjct: 641 FRSTSKVQEKRNLLLFLRPTVIRDDAKAE 669


>gi|328471682|gb|EGF42559.1| general secretion pathway protein D [Vibrio parahaemolyticus 10329]
          Length = 674

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
            I +   +  ++ ++   ++ V    D     V + +      + +        N     
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219
               QV ++  I E+       +G Q                                  
Sbjct: 341 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 399

Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   T        +   D+     + GG       +    +  ++ A+   +    
Sbjct: 400 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 459

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P +    
Sbjct: 460 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 519

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 520 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 578

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL  IP+LG LF+++    E+  + +   P +++
Sbjct: 579 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 612


>gi|307245013|ref|ZP_07527110.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306854178|gb|EFM86386.1| hypothetical protein appser1_2250 [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
          Length = 429

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + +  S K ++ L+       +Q+ ++  I  +  + L+++G +  I   ++G  K   +
Sbjct: 152 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 211

Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 212 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 271

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   S      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 272 NKKPASIKQGTEVPYVLYSRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 331

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    + +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF 
Sbjct: 332 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 391

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
           +S     + E+ I  TP++VK    +
Sbjct: 392 HSSDKISKRELVIFVTPYIVKNGQPQ 417


>gi|53728904|ref|ZP_00134621.2| COG4796: Type II secretory pathway, component HofQ [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|303250734|ref|ZP_07336930.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
 gi|303252023|ref|ZP_07338194.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302649453|gb|EFL79638.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           2 str. 4226]
 gi|302650404|gb|EFL80564.1| type II secretory protein [Actinobacillus pleuropneumoniae serovar
           6 str. Femo]
          Length = 417

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 108/266 (40%), Gaps = 15/266 (5%)

Query: 175 QYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
           + +  S K ++ L+       +Q+ ++  I  +  + L+++G +  I   ++G  K   +
Sbjct: 140 KDSPESMKNIVQLIRNLDKPTEQIAIEARIVTISSENLQELGVRWGIFAPTNGHHKIAGS 199

Query: 233 ------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                       +      +          ++    +  L ALE+   +  +A P L   
Sbjct: 200 LEANGLPNTNRLNVNFPVNNAASIALQVAKINGRVLDLELTALEQENNVEIIASPRLLTT 259

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + + AS   G +  Y   +      ++   +  + L  TP + +  +I L +    + P 
Sbjct: 260 NKKPASIKQGTEVPYVLYNRKDEVKNIEFKEAVLGLQVTPHISNDKQILLDLVVTQNSPN 319

Query: 341 IGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +    + +   ++ +T V    G TIVL G+ +    + ++ +P+L  IP+L  LF 
Sbjct: 320 STGSTLQGLVTIDKQELNTQVFAQHGETIVLGGIFQHLTAKGEDRVPILGSIPVLKKLFS 379

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
           +S     + E+ I  TP++VK    +
Sbjct: 380 HSSDKISKRELVIFVTPYIVKNGQPQ 405


>gi|325124244|gb|ADY83767.1| putative general secretion pathway protein [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 756

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 63/267 (23%), Positives = 102/267 (38%), Gaps = 30/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV      Q+G Q ++   +SG       + G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGKDADQLGVQWALGDINSGIGLINFTNAGSSLASL 440

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  TA   L+ P++ 
Sbjct: 441 AAGYLTGGASGLGSAIGAGSSIALGKYKEGADGSRQLYGALIQALKENTASNLLSTPSIV 500

Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +         T+V   D GV L   P +   G + L I
Sbjct: 501 TMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGENGTVRLEI 560

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T V    G T+VL GL+ DD++  ++GIP LS IP
Sbjct: 561 EQEVSNVQASKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVEFNRQGIPGLSSIP 620

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LFR+   +  +  + +   P +V
Sbjct: 621 YLGRLFRSDTRSNVKRNLLVFIHPTIV 647


>gi|77164279|ref|YP_342804.1| general secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|254435433|ref|ZP_05048940.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
 gi|76882593|gb|ABA57274.1| General secretion pathway protein D [Nitrosococcus oceani ATCC
           19707]
 gi|207088544|gb|EDZ65816.1| general secretion pathway protein D [Nitrosococcus oceani AFC27]
          Length = 833

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 71/340 (20%), Positives = 124/340 (36%), Gaps = 28/340 (8%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208
            +  +D +  V +     + +          +K++  L+       QV ++ TIAEV   
Sbjct: 488 AKDDEDKKPEVRVIPDVENNTLLISAPPPVYEKILVALHQLDIPPRQVLVEATIAEVTLT 547

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
              Q G +     +  G             +     F+        +   VL  L   T 
Sbjct: 548 DDLQYGVRWFFENT--GVKDYLGRGALTAAIPGTSTFTYGLFDAAGAARIVLDTLSSQTK 605

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGATSVTTHDYGVVLHFTPTVLS 324
           ++ L+ P L  +  Q+A    G Q   +T S         T +   D GV+L  TP V +
Sbjct: 606 VKVLSSPQLLVLDNQTAEIRVGDQIPIQTGSTIGIGGNSTTRIQFRDTGVLLTVTPRVNA 665

Query: 325 PGRIGLRIQTEVSEPVIG------------------VNAGDMPSYRVRKADTTVELPSGG 366
            GR+ + +  EV++                         G+ P++  R   + V + SG 
Sbjct: 666 GGRVTMELTQEVTDVGGTKLPTSAAPSGDGDDDNNNQTVGNNPTFLQRSFRSVVTVQSGD 725

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           TIVL GL++D+ +    G+P L K+P++G LF  +  ++  TE+ +  TP +V+      
Sbjct: 726 TIVLGGLIRDNERFSDSGLPFLHKLPLIGPLFGATAKSKSRTELIVLMTPRVVRNQYEAR 785

Query: 427 LSRPDDH--YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           L   +         D               KE  E    +
Sbjct: 786 LVTEEFREKLRNASDVAEEMGGIAPIAIPRKENKEKPSPS 825


>gi|251787909|ref|YP_003002630.1| putative outer membrane porin HofQ [Dickeya zeae Ech1591]
 gi|247536530|gb|ACT05151.1| type IV pilus secretin PilQ [Dickeya zeae Ech1591]
          Length = 433

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 148/397 (37%), Gaps = 40/397 (10%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V VQ VL +    AD    +   + +     G  ++ L     +Q L++ + + +    
Sbjct: 40  DVPVQRVLQA---LADHQQLN---LVVAPGVAGNVSLNLQQVPWQQALDIILRMGQLTLE 93

Query: 123 LEMTLRRFIADSNIR---------VEMVSDTVVLHGMVRTIQDSQRAVELSE-TFLSQSG 172
            + ++     D+ ++                + L  +  T+Q ++ A  ++       + 
Sbjct: 94  RQDSVMMVYPDTMMKDRQQKQEELAAKQRQQLPLQNVSVTLQYAEAADVVANLQSQRGTL 153

Query: 173 RNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIG 214
             +  N +  K  N L +                      QV L   I  +  + LK +G
Sbjct: 154 LTERGNVTVDKRTNTLLVRDVGSALEQIRPWIEELDKPLSQVQLAAHIVTISSEHLKALG 213

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRT 271
               +    +        +F      E    +       L+    +  L ALE+   +  
Sbjct: 214 VNWGLGDGMATGQALQMNNFNVSLPIESPAINAGFHLAKLNGRLLDLELMALEQENEVEI 273

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P L     Q+AS   G +  Y+  S ++G+TS+   +  + +  TP +L  G+I L 
Sbjct: 274 IASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPRILHGGQITLN 333

Query: 332 IQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +    + P   +     G++ +   ++  T V +  G TIVL G+ +    Q +  +P L
Sbjct: 334 LLISQNMPGRAIKQGENGEILAIDKQEIQTQVTVQDGETIVLGGIFQQQKNQAERQVPGL 393

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +P +GA FR+        E+ I  TP L++    +
Sbjct: 394 GALPGIGAWFRSGNRQHTRRELVIFITPTLIQAAKRK 430


>gi|145588279|ref|YP_001154876.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046685|gb|ABP33312.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 353

 Score =  179 bits (454), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 43/240 (17%), Positives = 95/240 (39%), Gaps = 12/240 (5%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------SKSFAADFGGKFVS 240
           +I    Q+ ++  I E      +++G +     + +G         +          F  
Sbjct: 116 HINSPSQILIEARIVEADERFARELGVKIGQQANLAGSRTDKKISANLDLGGAGLNGFNP 175

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                ++         +  L ALE     + L+ P +       A+   G +  Y+T S 
Sbjct: 176 ATVAATLLSKDASRLLQMELSALESEGQGKILSNPRIMTGDQVKATIEQGTELPYQTTSQ 235

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +   + +      + L   P +   G+I +     +++  IG+      +   +   + V
Sbjct: 236 NG--SKLQFRKANLRLEVLPKIHPDGKISML--VGINKDTIGMKTEQGYAIDTKSLSSEV 291

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +GGT ++ G+ +   ++ +  IPLL  IP+ G LFR+    +++TE+ +  TP ++ 
Sbjct: 292 TVENGGTAIIGGIYQTTEREDEVKIPLLGDIPLFGHLFRHKSKLKDKTELLVFLTPTVLD 351


>gi|224370094|ref|YP_002604258.1| GspD2 [Desulfobacterium autotrophicum HRM2]
 gi|223692811|gb|ACN16094.1| GspD2 [Desulfobacterium autotrophicum HRM2]
          Length = 761

 Score =  179 bits (454), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 114/305 (37%), Gaps = 18/305 (5%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
           ++ I D   +     +++   G   ++  S   +  +                   V+  
Sbjct: 437 KKEINDPKTKARPTPNSI--SGS-SSLNTSINIIPDAIRNALIIEATPADYQVVLDVLKR 493

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++    QV ++VT+AEV  +    +G + +        +        G       +F  
Sbjct: 494 LDV-LPRQVLIEVTLAEVTLNDSSSLGVEWTFIKDGGSVADGLIQGTLGSTNVLQYNFG- 551

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--- 304
               +   +   L AL     +  L+ P++ A   + A      +    T     G    
Sbjct: 552 ----NTQKWAATLTALASKGDVNILSSPSVLASDNKEAKIDISTEVPVVTTEYKYGTDGD 607

Query: 305 ----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT 358
               T++   + GV+L  TP +   G + + I  EVSE    V     + PS+  R   T
Sbjct: 608 DMLATNIQYRNTGVILTVTPHINERGLVSMEINQEVSEQADAVLAGGQEYPSFYKRSVQT 667

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           T+ +    TI + GL++   +    GIPLL+++P    LF  +    E+ E+ I  TP +
Sbjct: 668 TLTVNDNQTIAIGGLMRKKEEDSSAGIPLLNQLPFFKYLFGKTAGGNEKNELIILITPRV 727

Query: 419 VKPVA 423
           V  + 
Sbjct: 728 VSDLD 732


>gi|300690062|ref|YP_003751057.1| general Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
 gi|299077122|emb|CBJ49746.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum PSI07]
          Length = 805

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 71/323 (21%), Positives = 115/323 (35%), Gaps = 45/323 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 489 VGSGGIGSTAAQTALSGITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSAASVTPFQTFDRKDVGITLRVKPQITDGGLV 608

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDAEQKVPG 668

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFN 446
           L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y+   D +  F   
Sbjct: 669 LGDIPVLGALFRSESKQRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDTQQGFVSP 727

Query: 447 RVNKIYGPKEASEVEGQNYKGAI 469
            V      ++   +   +     
Sbjct: 728 NVLPTTSDRDTPVLPSPDSMRPA 750


>gi|300702828|ref|YP_003744429.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
 gi|299070490|emb|CBJ41785.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CFBP2957]
          Length = 713

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E      + +G +      ++G     +                      
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPVTTNGTWTTDPAVSL 520

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L    +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|73542815|ref|YP_297335.1| type II and III secretion system secretin [Ralstonia eutropha
           JMP134]
 gi|72120228|gb|AAZ62491.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Ralstonia eutropha JMP134]
          Length = 706

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/257 (22%), Positives = 100/257 (38%), Gaps = 23/257 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------S 222
           +  +N ++I    QV ++  I E      + +G +    G                   S
Sbjct: 447 QGFLNKIDIPVR-QVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYSNVLPGANS 505

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +GP  S  A             S+            L ALE     + ++ P +   + 
Sbjct: 506 DNGPFLSLPAGAINGTNPANIAVSIFNSAATRFLALELSALEADGKGKIISSPRVVTANN 565

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             A    G +  Y+  +SS GATSV      + L  TP +   G + L    +V++  +G
Sbjct: 566 IKALIEQGTELPYQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVG 622

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +      +   +   T V + +GGT+V+ G+         + +P L  IP+LG LF+N+ 
Sbjct: 623 IQTTSGFAIDTKHVQTQVLVDNGGTVVIGGIYTQTESTDVDKVPFLGDIPVLGYLFKNNA 682

Query: 403 FNREETEIFIAATPFLV 419
             R  TE+ +  TP ++
Sbjct: 683 KVRNRTELLVFLTPRVL 699


>gi|225077283|ref|ZP_03720482.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
 gi|224951427|gb|EEG32636.1| hypothetical protein NEIFLAOT_02342 [Neisseria flavescens
           NRL30031/H210]
          Length = 710

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSS 223
             N+      +K+++ L++    QV ++  I E      + +G +            GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGFVGAKGSRAWGSN 486

Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                 + S   +      +     ++       +    + A E
Sbjct: 487 WSNAQTNYSTKFSSDRGDVDYPTWSLEPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                +T++ P +     + A   SG +  Y+  +SS GATS+T     + L  TP +  
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEAASS-GATSITFKKAVLGLTVTPNITP 605

Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+I + ++     P    V++        +  +T   +  GGT+++ G+ +++      
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +P+L  IP++G LF++        E+ I  TP ++  V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPHIMDNV 704


>gi|254429767|ref|ZP_05043474.1| general secretion pathway protein D [Alcanivorax sp. DG881]
 gi|196195936|gb|EDX90895.1| general secretion pathway protein D [Alcanivorax sp. DG881]
          Length = 694

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/458 (18%), Positives = 159/458 (34%), Gaps = 50/458 (10%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           +   L    P    L  +  ANA +I+     I + + I   L+      V V       
Sbjct: 141 LVPVLRPLVPQYGHLAAVGSANALIISDHMDNIRRMEAIIASLDSAESEDVQVIKLKYAF 200

Query: 72  SDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMTLR-R 129
           +      +   +P+T    GK   G   V+      + ++  D +  + +  +  +L   
Sbjct: 201 AGDMVKMLESLTPQTGGRRGKTPEGGVTVVADERTNRLIIKGDRVTRQRMVQMIRSLDTE 260

Query: 130 FIADSNIRVE--MVSDTVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKV 184
              +  ++V      D   L  +++   D     +    S+T  + S  N   +  + + 
Sbjct: 261 ETDNGGVQVIRLSHGDAKTLAELLKNFADGASVTKAGGDSKTATAASSNNSKVSIQADES 320

Query: 185 MNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +N L I                      Q+ ++  I E+  +  K +GFQ+    + SG 
Sbjct: 321 LNALVIRAEPSMMRELQSVISQLDVRRAQILIEAAIVEISGEQGKNLGFQYVGGSNESGV 380

Query: 227 SKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALERATA 268
                   G    S                                 +  ++ AL  ++ 
Sbjct: 381 GAVNFGGGGLSINSIVQALATDDPSGLSLGDGITAGLGETDSNGDLKWGALVQALSTSSD 440

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPT 321
           +  L+ P++  +  + AS   G    + T  S+          T++   D G+ L  TP 
Sbjct: 441 VNLLSTPSILTLDNEEASIVVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKVTPH 500

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V     I L ++ E S                RK  +TV      TI L GL+KDDI+  
Sbjct: 501 VAGLSTIRLELEQENSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDIRVT 560

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +PLL  IP LG LFR++  +R ++ + +   P ++
Sbjct: 561 VRKVPLLGDIPFLGFLFRSTSKDRVKSNLMVFLKPTIL 598


>gi|152998114|ref|YP_001342949.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
 gi|150839038|gb|ABR73014.1| type II and III secretion system protein [Marinomonas sp. MWYL1]
          Length = 393

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 5/227 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ +   IA+V R    Q G        S G   S         ++         +   
Sbjct: 168 KQIEISAQIAQVSRTAQSQFGVNWQAK-LSDGVRSSIGGAVDLGALTPTTSLDFSSIGGS 226

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L  +E       +++P +    G  A   SG +  Y+TV  S    S+      
Sbjct: 227 GLLALTLDMMESEGLANVVSKPKIVTSEGLPARIESGTEVPYQTV--SDDKVSIEFRQAV 284

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           ++L  TP V   G I L     + +  +G     +PS +  +  T V + +  T+VL G+
Sbjct: 285 LMLEVTPFVKDSGHILL--SLTIHQDSVGDLVNGVPSLKTNRLKTQVVVKNQETLVLGGV 342

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +++  + +  +P  S IP LG LF+     +E+ E+ +  TP L++
Sbjct: 343 FREERFESESRVPFFSDIPWLGELFKRQSEQQEKVELLVFITPKLLQ 389


>gi|330875847|gb|EGH09996.1| general secretion pathway protein D [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 775

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 62/307 (20%), Positives = 110/307 (35%), Gaps = 21/307 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVR 206
           G   + +    +  ++    S     +   +  K++ + +        QV ++  I EV 
Sbjct: 455 GSNASSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEVS 514

Query: 207 RDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
                 +G Q         S T  +   +       G    +     +        + + 
Sbjct: 515 LTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQV 574

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDY 312
            L ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     
Sbjct: 575 ALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQT 634

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTIV 369
           GV+L   P +   G + + IQ +VS      N       P    R   T V   SG T++
Sbjct: 635 GVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRSVSTQVAAQSGQTVL 694

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++   +     +
Sbjct: 695 LGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLITPRVI--TSSSQARQ 752

Query: 430 PDDHYSV 436
             D Y  
Sbjct: 753 VTDDYRQ 759


>gi|121997138|ref|YP_001001925.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
 gi|121588543|gb|ABM61123.1| pilus (MSHA type) biogenesis protein MshL [Halorhodospira halophila
           SL1]
          Length = 538

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/461 (18%), Positives = 157/461 (34%), Gaps = 69/461 (14%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKI---------SIGLNKVIILQVPVDVQD 68
           +        P   +      +I+   +G  +           ++ ++  +  ++ + ++D
Sbjct: 65  ALGAPGLGDPLALQPEDPRFDITADGVGAREFFHGLVEDTPYNVVVHPDLEGELSLTLRD 124

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK-QMLNLDILIERDIAHLEMTL 127
           V V  P   D V    R +Y +     +   +++    + ++ +LD L      H    +
Sbjct: 125 VSV--PEVMDTV----REIYGYEYKQARTGFLILPARPRAEVFHLDYLNVHRSGHSGTRV 178

Query: 128 RRFIADSNIRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS---- 181
                   I  E   D V+              +  E     +          S      
Sbjct: 179 TS----GEITGEDDGDGVIGSRVDTASNSDLWGQVEETVSRMIDDDDTASVVASPQAGTL 234

Query: 182 ------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                       +  ++ L  +   QV L+  I EV      Q G      G   G +  
Sbjct: 235 AVRGMPESLRRVEAFVDRLQGSLNRQVILEARILEVELGDDFQAGISWESLGRHDGQALE 294

Query: 230 FAADFGGKF-VSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQS 284
            +   G    +S  G F++     +      FE  L ALE+   ++ L+ P ++ ++ Q 
Sbjct: 295 GSFRPGDNLELSSAGVFNIGITRGQDGQRGFFEGFLRALEQQGDVQVLSTPQVSTLNNQK 354

Query: 285 ASFTSGGQHLYKTVSSSTGAT---------------SVTTHDYGVVLHFTPTVLSPGRIG 329
           A   +G    Y+T  S    T                      G+ L  TP +   G I 
Sbjct: 355 AVIKAGTDSFYQTDFSINYRTVEVGGQTTTQPELDPDFEPFFSGIALDVTPQIEESGWIN 414

Query: 330 LRIQTEVSEPVI------GVNAGDMPSYR-----VRKADTTVELPSGGTIVLAGLLKDDI 378
           L +Q  V+E              D   +      VR++D+ V   SG  IV+ GL+++  
Sbjct: 415 LHVQPSVTEVRERERTLRTGRGDDEVRFSLAESDVRQSDSIVRARSGEMIVIGGLIEERE 474

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           QQ    +PLL ++P+LG LF   R    + E+ I   P +V
Sbjct: 475 QQETSRVPLLGRVPLLGWLFTQERQESSKYELVILLRPRVV 515


>gi|299065327|emb|CBJ36496.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CMR15]
          Length = 805

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 109/294 (37%), Gaps = 44/294 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 489 VGSGGIGSTAAQTALSSLTGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGTV 608

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y    DA+
Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYGYMRDAQ 721


>gi|157372484|ref|YP_001480473.1| general secretion pathway protein D [Serratia proteamaculans 568]
 gi|157324248|gb|ABV43345.1| general secretion pathway protein D [Serratia proteamaculans 568]
          Length = 660

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 63/320 (19%), Positives = 119/320 (37%), Gaps = 22/320 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTV-VLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
                 L   L    A+     + V + V V+  MV    +   A+ +            
Sbjct: 292 YAKAQGLLEVLSGVSANLQDEKKTVGNNVSVMKNMVIKADEQTNALII--------NATP 343

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
              S+ +KV+  L+I    QV ++  I E++      +G Q +          +  A   
Sbjct: 344 DVMSNLEKVIEQLDIR-RAQVLVEAVIVEMQNADGLNLGIQWANRYGGGTQFGNAQAQIA 402

Query: 236 GKFVSEG-----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             F             +       ++  +L A+   +    LA P++  +  + A F+ G
Sbjct: 403 PGFKGGMTEVFKNANGLVTGFYSGNWAGLLTAISNQSQNNILATPSIMTLDNEDAEFSVG 462

Query: 291 GQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
                    +T +S     +V     G+ L   P +     + L+I+ EVS      +  
Sbjct: 463 QDVPILTGSQTTNSDNVFNTVARKTVGIKLKVKPQINKGQSVLLQIEQEVSSVAENSSVD 522

Query: 346 --GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                 ++ +R  + TV + SG T+V+ GLL       K  +P L +IP+LGALFR++  
Sbjct: 523 KDNLGATFNIRTVNNTVLVESGETVVVGGLLDKSQSDSKSAVPFLERIPLLGALFRSTSH 582

Query: 404 NREETEIFIAATPFLVKPVA 423
              +  + +   P +++   
Sbjct: 583 KESKRNLILFIRPTVIRSTE 602


>gi|83748197|ref|ZP_00945224.1| PilQ [Ralstonia solanacearum UW551]
 gi|207744528|ref|YP_002260920.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
 gi|83725165|gb|EAP72316.1| PilQ [Ralstonia solanacearum UW551]
 gi|206595934|emb|CAQ62861.1| fimbrial type-4 assembly protein [Ralstonia solanacearum IPO1609]
          Length = 713

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 94/249 (37%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E      + +G +      S+G                            
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGIGNTYSNVVSPVTTNGTWDNSSALSL 520

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L    +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|207721850|ref|YP_002252288.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
 gi|206587017|emb|CAQ17601.1| fimbrial type-4 assembly protein [Ralstonia solanacearum MolK2]
          Length = 713

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E      + +G +      ++G     +                      
Sbjct: 461 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNSYTNVTSPITTNGTWTTDPAVSL 520

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 521 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 580

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L    +V++  +G    +  +
Sbjct: 581 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 637

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 638 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 697

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 698 LVFLTPRVL 706


>gi|194290974|ref|YP_002006881.1| fimbrial type IV assembly protein pilq precursor [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224809|emb|CAQ70820.1| Fimbrial type IV assembly protein pilQ precursor [Cupriavidus
           taiwanensis LMG 19424]
          Length = 710

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/245 (22%), Positives = 95/245 (38%), Gaps = 22/245 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADF 234
            QV ++  I E      + +G +    G                   S +GP  S  A  
Sbjct: 462 RQVIIEARIVEATDTFSRNLGVKLGFAGQYNNARVGNTYNNVLPGATSDNGPFLSLPAGS 521

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                      S+            L ALE     + ++ P +   +   A    G +  
Sbjct: 522 INGTNPANIAVSLFNSAATRFLALELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y+  +SS GATSV      + L  TP +   G + L    +V++  +G+      +   +
Sbjct: 582 YQAATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIQTTSGFAIDTK 638

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V + +GGT+V+ G+         + +PLL  IP+LG LF+N+   R  TE+ +  
Sbjct: 639 HVQTQVLVENGGTVVIGGIYTQTESTDVDKVPLLGDIPVLGYLFKNNAKVRNRTELLVFL 698

Query: 415 TPFLV 419
           TP ++
Sbjct: 699 TPRIL 703


>gi|134302144|ref|YP_001122113.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
 gi|134049921|gb|ABO46992.1| type IV pilus secretin/type II and III secretion system protein
           [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 590

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTKEKLQRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
            I EV R    ++GF + +       + G     +        +     +  G       
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPVDTFVGTTAKLAY 409

Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V 
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
             +  + L  TP +   G I + I    +                P  + R+  T V   
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584


>gi|331017211|gb|EGH97267.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 361

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/261 (23%), Positives = 101/261 (38%), Gaps = 19/261 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV+      +G Q         S T  +   +       G    +    
Sbjct: 87  PLQVQIETRILEVKLTGELDMGVQWYLGRLAGNSGTTGNVTNTPGSQGSLGTGGAALAAT 146

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV------ 298
            S        + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 147 DSFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 206

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
           +++T  +SV     GV+L   P +   G + + IQ +VS+   G  +      P    R 
Sbjct: 207 ATNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSDADTGTASTDLNGNPRISTRS 266

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF NS  +++ TE+ +  T
Sbjct: 267 VSTQVAAQSGQTVLLGGLIKQDNSETVSAVPYLGRIPGLKWLFGNSSKSKDRTELIVLIT 326

Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
           P ++   +     +  D Y  
Sbjct: 327 PRVI--TSSSQARQVTDDYRQ 345


>gi|291619222|ref|YP_003521964.1| HofQ [Pantoea ananatis LMG 20103]
 gi|291154252|gb|ADD78836.1| HofQ [Pantoea ananatis LMG 20103]
          Length = 413

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 56/247 (22%), Positives = 105/247 (42%), Gaps = 7/247 (2%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF----AADFGGKF 238
           + +  L++   +QV L   I  +  + L ++G    +       +++          G  
Sbjct: 164 RWIRALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRHPLLDIPLGLN 222

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
             +         +     +  L ALE+   +  +A P L     Q+AS   G +  Y+  
Sbjct: 223 SHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIKQGTEIPYEVS 282

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAGDMPSYRVRKA 356
           + ++GATS+   +  + +  TP VL  GRI L+I     V    +      + S   ++ 
Sbjct: 283 AGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDSQVLSIDKQEI 342

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V +  G T+ L G+      + +  +PLL  +P++G+LFR     + + E+ I  TP
Sbjct: 343 ETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQRKRELVIFMTP 402

Query: 417 FLVKPVA 423
            LV+  A
Sbjct: 403 RLVREAA 409


>gi|254673580|emb|CBA09077.1| fimbrial assembly protein [Neisseria meningitidis alpha275]
          Length = 687

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 422 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 480

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 481 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 540

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 541 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 600

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 601 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 660

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 661 GKKTDRRELLIFITPRI 677


>gi|261341890|ref|ZP_05969748.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
 gi|288315792|gb|EFC54730.1| type IV pili biogenesis protein PilQ [Enterobacter cancerogenus
           ATCC 35316]
          Length = 403

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/231 (27%), Positives = 104/231 (45%), Gaps = 5/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250
           DQV L   I  +    L+++G + ++  +S           G           V    G 
Sbjct: 170 DQVELAAHIVTINEKSLRELGVKWNLAEASEAGRVGEVTALGADLSVANATTHVGFNIGR 229

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   
Sbjct: 230 IDGRLLDLELSALEQKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFK 289

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP VL  GR+ L++    + P  V+    G+  +   ++ +T VE+ SG T+
Sbjct: 290 EAVLGMEVTPVVLPGGRVRLKLHISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETL 349

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L G+     +   + +P L +IP LG LFR+   + E  E+ +  TP LV
Sbjct: 350 ALGGIFSQKNKTGSDSVPGLGRIPWLGQLFRHDGKDNERRELVVFITPRLV 400


>gi|189424703|ref|YP_001951880.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
 gi|189420962|gb|ACD95360.1| type IV pilus secretin PilQ [Geobacter lovleyi SZ]
          Length = 891

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 52/264 (19%), Positives = 102/264 (38%), Gaps = 22/264 (8%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
              + A    +K++  L++  E QV ++  I E      + +G    I       S    
Sbjct: 630 KDVKSAVDDMRKILASLDVP-EKQVMIEARIVEASSTFTQSLGVNWGIHYRDGSASIAGI 688

Query: 228 ------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                        +  +             S   +      +  L+A   A  +R ++ P
Sbjct: 689 NSMDTNFGGLASTAPTSSGVSGSPGAAAGISFGTLSSNIKLDLRLNAAVSAGLVRIVSTP 748

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +  ++ +SA  T G Q  Y    S++        +  + L  TP +   G + ++I  +
Sbjct: 749 RVATLNHKSAKITQGQQIPYTA--STSDKIETKFVEAALALEVTPHINPNGTVVMKIDAK 806

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
              P    + G+ P+   ++A T + L  G T V+ G+  +      +G+P L+ +P LG
Sbjct: 807 NDSP---GSTGNPPAINKKQATTEMMLRDGETTVIGGIFVESESNNDDGVPFLADVPWLG 863

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF+++   R   E+ I  TP ++
Sbjct: 864 GLFKSNETKRNRNELLIFITPRII 887


>gi|3978475|gb|AAC83352.1| outer membrane secretion protein Q [Pseudomonas alcaligenes]
          Length = 649

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/504 (16%), Positives = 167/504 (33%), Gaps = 69/504 (13%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV-----IILQVPVDVQDVLVS 72
              P    L  +  +NA +I+     I + +++   L+        ++ +          
Sbjct: 157 PLVPQNGHLAAVAASNALIISDRRANIERIRELIAELDAQGGGDYNVINLQHAW------ 210

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL----- 127
                D        +    KN     VI      + +L       + +A+L  +L     
Sbjct: 211 ---VLDAAEALNNAVMRNEKNSAGTRVIADARTNRLILLGPPAARQRLANLARSLDIPST 267

Query: 128 --------RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
                   R   +D+    E + D          G        Q  +  ++  L+     
Sbjct: 268 RSANARVIRLRHSDAKSLAETLGDISEGLKTAEGGGEAASSKPQNILIRADESLNALVLL 327

Query: 175 QYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
              ++ +  ++++  L++    QV ++  I E+  DI   +G Q ++             
Sbjct: 328 ADPDTVATLEEIVRNLDVP-RAQVMVEAAIVEISGDISDALGVQWAVDARGG-TGGLGGV 385

Query: 233 DFGGKFVSEGGDF----------------SVKGVLDRFSFETVLHALERATAIRTLAEPT 276
           +FG   +S G                        +   +F  ++ AL   +    L+ P+
Sbjct: 386 NFGNTGLSVGTVLKAIQNEEIPDDLTLPDGAIIGIGTENFGALITALSANSKSNLLSTPS 445

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           L  +  Q A    G    ++T S +          T++   D GV L  TP +     + 
Sbjct: 446 LLTLDNQEAEILVGQNVPFQTGSYTTDASGANNPFTTIEREDIGVTLKVTPHINDGATLR 505

Query: 330 LRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           L ++ E+S                   R   + +    G  IVL GL++DD+      +P
Sbjct: 506 LEVEQEISSIAPSAGVNAQAVDLVTNKRSIKSVILADDGQVIVLGGLIQDDVTSTDSKVP 565

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED------DA 440
           LL  IP++G LFR+++    +  + +   P +V+       +     YS         D 
Sbjct: 566 LLGDIPLIGRLFRSTKDTHVKRNLMVFLRPTIVRD-RAGMAALSGKKYSDISVLGADEDG 624

Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464
            +       +++    A  V+ ++
Sbjct: 625 HSSLPGSAERLFDKPGAGAVDLRD 648


>gi|300690208|ref|YP_003751203.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
 gi|299077268|emb|CBJ49894.1| fimbrial type-4 assembly protein [Ralstonia solanacearum PSI07]
          Length = 717

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 51/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-----------------------F 230
            QV ++  I E      + +G +      ++G                           F
Sbjct: 465 RQVMIEARIVEADDTFSRNLGAKLGFASKTNGAGYGNTYTNVVSPVTTNGTWDNSPALSF 524

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 525 PANGINGVSAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 584

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV      + L  TP +   G + L    +V++  +G    +  +
Sbjct: 585 TELPYQAATSS-GATSVQFRKANLKLEVTPKITPDGNVFLD--VDVNKDSVGTQTTNGFA 641

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 642 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 701

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 702 LVFLTPRVL 710


>gi|269959419|ref|ZP_06173802.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
 gi|269835856|gb|EEZ89932.1| general secretion pathway protein D [Vibrio harveyi 1DA3]
          Length = 675

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/453 (15%), Positives = 156/453 (34%), Gaps = 83/453 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        ++   S   M      + +        
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSF------------- 230
               QV ++  I E+       +G Q         I   ++G                  
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGAQIGNVMVGLEEAKDQTR 399

Query: 231 ------------------AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                             + D+     + GG       +    +  ++ A+   +    L
Sbjct: 400 TEYYTNSDGERTPYDVTESGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDSNSNIL 459

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           + P++T +    ASF  G +    T      ++     +V   + G+ L   P +     
Sbjct: 460 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDS 519

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PL
Sbjct: 520 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPL 578

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IP++G LF+++    E+  + +   P +++
Sbjct: 579 LGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 611


>gi|86146572|ref|ZP_01064894.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
 gi|85835629|gb|EAQ53765.1| Type II secretory pathway, component EpsD [Vibrio sp. MED222]
          Length = 674

 Score =  179 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +     + +  + +  +        +  ++ + V+  L+I    QV ++  I E+     
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359

Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
             +G Q         I  S++G S                                    
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSTTTKAVYDKDNNFLRNETTTEK 419

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D+     +  G       +    +  ++ A+   +    L+ P++T +    ASF  G 
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479

Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +    T S     +     +V   + G+ L   P +     + L+I+ EVS  +    A 
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598

Query: 407 ETEIFIAATPFLVK 420
           +  + +   P +++
Sbjct: 599 KKNLMVFIKPTIIR 612


>gi|312958540|ref|ZP_07773060.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
 gi|311287083|gb|EFQ65644.1| type IV pilus biogenesis protein [Pseudomonas fluorescens WH6]
          Length = 460

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 68/464 (14%), Positives = 157/464 (33%), Gaps = 63/464 (13%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++RTF +       +    +A   P +     +              ++ LN    +++ 
Sbjct: 1   MKRTFLSFGVALWIAFTAPMAAAVPNRVDLIQLPAPGRAMSDGYAGDTLNLNFQN-IELR 59

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             +Q +       A + + +   +       G   + L      Q L+L +  +     +
Sbjct: 60  AVLQQIA----DVAGLNLVASDDV------QGTITLRLKDVPWDQALDLVLQAKGLDKRV 109

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR---------AVELSETFLSQSGRN 174
           +  +        +    +  T+     +  +   +R         A +L++ F S +G  
Sbjct: 110 KAGVLLVAPAEELAARELL-TLEARKQMADLAPLRRELLQVNYAKAADLAKLFQSMTGFE 168

Query: 175 QYANSSSK-----------------------KVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              +                           +++  L+I    QV ++  I E   D  K
Sbjct: 169 GATDERGSVAVDDRTNNIIAYQTSERLEELRRIVAQLDIPVR-QVMIEARIVEANVDYDK 227

Query: 212 QIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDFSVKGVLDRF 254
            +G +     +    +                            ++      +  + D  
Sbjct: 228 SLGARWGGAINRGNWAAGGIRKPVPDGEAPPENLPSSPFVDLGSLTGTSGLGIAYITDNL 287

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
             +  L A+E+      +++P +     ++A    G +  Y+   +S GATSV+  +  +
Sbjct: 288 LLDLELTAMEKTGNGEIVSQPKVVTSDKETARILKGTEIPYQES-TSQGATSVSFKEASL 346

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP +     + + ++    EP       D+P  +  + +  V +  G TIV+ G+ 
Sbjct: 347 SLEVTPQITPDNHVIMVVKVTKDEPDYLNKLNDVPPIKKNEVNAKVLVKDGETIVIGGVF 406

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +   ++ + +P L  +P LG LFR      +++E+ +  TP +
Sbjct: 407 SNTQSKVVDKVPFLGDVPYLGRLFRRDVLAEKKSELLVFLTPRI 450


>gi|323939252|gb|EGB35464.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 504

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 156 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 214

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
               +G Q +     +    +                  G   S    + +    +    
Sbjct: 215 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 274

Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 275 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 334

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 335 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 394

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 395 ETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 449


>gi|294788170|ref|ZP_06753413.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
 gi|294483601|gb|EFG31285.1| type IV pilus secretin PilQ [Simonsiella muelleri ATCC 29453]
          Length = 700

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 66/419 (15%), Positives = 146/419 (34%), Gaps = 39/419 (9%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPRTMYLF 90
                +      + K   I+I  +  +  ++ + ++DV    P  +A  +V S R + + 
Sbjct: 281 FQDIEVRTVLQILAKESGINIVASDSVQGKMTLSLKDV----PWDQALDLVLSARDLVM- 335

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--- 147
            +  G    IL   + K+    D      +  L   + +        VE + D + L   
Sbjct: 336 -EKNGNIINILTNAESKKRRLEDAEDRAKLDDLIPLVSQTFQLKYKNVEELRDVLKLDQR 394

Query: 148 ---HGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
               G   ++   + +  +   T               ++++  L++    QV ++  I 
Sbjct: 395 GNDSGTSGSLLTKRGSARVDPATNTLIVKDTSTVIQEFQRLIEELDVPAR-QVMVETRIV 453

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------------------FVSE 241
           E    + + +G +     +      +   +                            + 
Sbjct: 454 EADVSVGRDLGIKLGYARAGRTGVGNTYNNALNNRNVGVGASTGVIDISPNINLPTVATA 513

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +       +    L A+E     +T++ P +     + A    G Q  Y+    +
Sbjct: 514 TTALGLIRSFGSSALSLELSAMEEENRSKTISSPRVLTQDRKEAEIRQGTQIPYQ-TRDA 572

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTV 360
            G+ +    D  + +  TP +     I L +           +NA   P+  V++  T  
Sbjct: 573 DGSYTTAFKDAVLSMKVTPRITPDNNIILDVTINKDNVDNTRINADGEPAISVKQVKTQA 632

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +GGT+V+ G+ ++ I      +PLL  +P+LG LF++   N + +E+    TP ++
Sbjct: 633 MVENGGTLVVGGVYQEQISNNISKVPLLGDVPVLGNLFKSKSRNHQRSEVLFFITPRII 691


>gi|262402018|ref|ZP_06078583.1| type II secretory pathway component PulD [Vibrio sp. RC586]
 gi|262351990|gb|EEZ01121.1| type II secretory pathway component PulD [Vibrio sp. RC586]
          Length = 675

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVITAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
           +       +G Q         I   ++G S                              
Sbjct: 353 MSEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D+     +  G       +    +  +++A+   +    L+ P++T +    
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAIESESKVPLLGDIPVLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|269103695|ref|ZP_06156392.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163593|gb|EEZ42089.1| putative type II secretory pathway component EpsD [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 579

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 117/317 (36%), Gaps = 47/317 (14%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEV 205
           G  ++   S+  V ++    + S          +K   +++ L+I    QV ++  I EV
Sbjct: 204 GQAKSASSSKNEVSINADKGTNSLVISAPPDLMRKLKDIISQLDIR-RAQVHIEAMIVEV 262

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------------- 240
           +       G Q            +     G   V+                         
Sbjct: 263 QEGDGLNFGVQWGSEDGGIIQYGNSPVGIGSYMVAKKEAEDQTKVETRYDSDGKPYTYET 322

Query: 241 ------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                        GG       +    +  +++A+        L+ P++T +  Q A  +
Sbjct: 323 KESGDYSSLAKLLGGVNGTAVAIAMGDWTALVNAVRTNRNANVLSTPSITVLDNQEAELS 382

Query: 289 SGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G +   +T      ++    T+V   D G+ L  TP +     + L I+  VS+     
Sbjct: 383 VGQEVPVQTGSTSSSNNDNPFTTVERKDVGIQLTVTPQINEGDSVKLDIKQVVSQVADAQ 442

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A D+  +  R+ +T V +  G  I L G++++   + +  +P+L  IP+LG+LFR++  
Sbjct: 443 GAVDI-RFDKRELNTAVLVKDGSMIALGGMMQEKALESESKVPILGDIPVLGSLFRSTNN 501

Query: 404 NREETEIFIAATPFLVK 420
              +T + I   P +++
Sbjct: 502 ETVKTNLLIFIKPTIIR 518


>gi|52841166|ref|YP_094965.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52628277|gb|AAU27018.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 698

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
            I     +D  VL    +    S R     +   +            +  +++  L+I  
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
           + QV ++  I EV +D  + IG +  ++  +        A+                   
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490

Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                             ++  + D    +  L ALE       ++ P L   + Q A+ 
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
              G+ +    ++S+GAT+V      + L  TP +   G+I + +Q     P        
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G LF N +   + 
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 669 EELLIFITPRII 680


>gi|160896756|ref|YP_001562338.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160362340|gb|ABX33953.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 819

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 55/242 (22%), Positives = 108/242 (44%), Gaps = 14/242 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244
             Q+ ++ +I EV  +   Q G Q + +G       S +                + G  
Sbjct: 536 PTQILIEASIVEVTLNDGLQYGLQWAFSGDVGNNGYSGSGLISTDGKRTTADIAAAIGQG 595

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTV 298
           F+        + +  L+AL   T ++ +A P+L  +   +A+ + G Q  Y       T 
Sbjct: 596 FNYTLKNSAGTIKAALNALSSKTNVKVVASPSLMVLDNHTAAISVGTQQPYRSGEISTTT 655

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             S+ A S    D GV L  TP+V +   + + +   V++           ++  R+  +
Sbjct: 656 VGSSNAVSYQYKDTGVNLQVTPSVNAGNIVTMTVNQMVTDVGAKDEITQQVTFLQRQLSS 715

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG +IV+ GL++++    + GIP+L ++P++G LF ++  +   TE+ +  TP +
Sbjct: 716 RVSVRSGESIVMGGLIQENTSDGRSGIPVLHELPVVGNLFGSTNNSMRRTELLVIITPRV 775

Query: 419 VK 420
           V+
Sbjct: 776 VR 777


>gi|84386329|ref|ZP_00989357.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
 gi|84378753|gb|EAP95608.1| Type II secretory pathway, component EpsD [Vibrio splendidus 12B01]
          Length = 674

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +     + +  + +  +        +  ++ + V+  L+I    QV ++  I E+     
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359

Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
             +G Q         I  S++G S                                    
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDSETTTAVYDSDGKFLRNETTTEE 419

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D+     +  G       +    +  ++ A+   +    L+ P++T +    ASF  G 
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479

Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +    T      S+     +V   + G+ L   P +     + L+I+ EVS  +    A 
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598

Query: 407 ETEIFIAATPFLVK 420
           +  + +   P +++
Sbjct: 599 KKNLMVFIKPTIIR 612


>gi|257464993|ref|ZP_05629364.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
 gi|257450653|gb|EEV24696.1| type II secretory pathway, component HofQ [Actinobacillus minor
           202]
          Length = 442

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 97/252 (38%), Gaps = 16/252 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVSEG 242
            +Q+ ++  I  +  + L ++G +  +           G+  G       +    F   G
Sbjct: 181 TEQIAIEARIVTISSENLHELGVRWGMLSPNTSHSRLGGTLEGNGVDSTKNLNVNFPVSG 240

Query: 243 GDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G  +V     ++    +  L ALE+  ++  +A P L   + + AS   G +  Y     
Sbjct: 241 GASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTTNKKLASIKQGTEIPYAIYDR 300

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKA 356
            +    V   +  + L  TP +    +I + +    +      V   +     S   ++ 
Sbjct: 301 KSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQGQSVVSSTSGNAAVSIDKQEL 360

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T V    G TIVL G+ +    +  + +P+L  IP L  LF   +    + E+ I  TP
Sbjct: 361 NTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKHLFSYQKDQISKRELVIFVTP 420

Query: 417 FLVKPVAMRDLS 428
           ++++   +  L 
Sbjct: 421 YIIQANDINALP 432


>gi|261381191|ref|ZP_05985764.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
 gi|284795810|gb|EFC51157.1| type IV pilus biogenesis protein PilQ [Neisseria subflava NJ9703]
          Length = 710

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
             N+      +K+++ L++    QV ++  I E      + +G +            GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRNAWGSN 486

Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                 + S   +      +     ++       +    + A E
Sbjct: 487 WSNAQTNYNTNASFNRGDVRYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                +T++ P +     + A   SG +  Y+   SS+GATS+T     + L  TP +  
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605

Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+I + ++     P    V++        +  +T   +  GGT+++ G+ +++      
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +P+L  IP++G LF++        E+ I  TP ++  V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|291285874|ref|YP_003502691.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
 gi|290765747|gb|ADD59707.1| type II secretion protein [Escherichia coli O55:H7 str. CB9615]
          Length = 656

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL G+   I++  +    +E          +  +++             + V++ L+I  
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239
             QV ++  IAEV+      +G Q     S      S                    +  
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +      +     + ++  +L AL  ++    LA P++  +    A+F  G +    + S
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352
            +T       +V     G+ L   P +     + L I+ EVS   +  +        ++ 
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583

Query: 413 AATPFLVK 420
              P +++
Sbjct: 584 FIRPTIIR 591


>gi|220931453|ref|YP_002508361.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219992763|gb|ACL69366.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 881

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 126/326 (38%), Gaps = 52/326 (15%)

Query: 106 GKQMLNLDILIER-DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           G+++    + ++  ++ +L   ++    D  ++   +   +++ G      + Q  V L 
Sbjct: 300 GEEIDTEVVRVDYGNLDNLISVIQGLFPDIRLQSNPLKKEIIIKG---NTSEVQEIVSL- 355

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                               +N L+I    QV ++    E+  + + + G + +++    
Sbjct: 356 --------------------VNSLDIP-RRQVIIEARFEEISANKISEFGMRPNLSEIQF 394

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
              ++                          +   L  LE       LA P L  ++G++
Sbjct: 395 IFDEATRELKSMNIT----------------WPEYLRFLEEEGQANMLANPRLLTLNGEN 438

Query: 285 ASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           A    G +            +     + A S    D G+ L FTP +   G I + +  E
Sbjct: 439 ARLLIGDKVPVKIEETSGSSEESEGESNAVSYEYIDVGISLEFTPWITEDGYIIMDVAPE 498

Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS           +P  + R+A T + L  G T  + GL+++D  +    +PLL  IP+L
Sbjct: 499 VSSLGSPMGGGESIPPIKTREARTKIRLKDGQTFAIGGLIREDELESIAKVPLLGDIPLL 558

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR S+ ++ +TE+ I  TP +VK
Sbjct: 559 GTLFRRSQTDKVKTEVVIFITPHIVK 584


>gi|54293906|ref|YP_126321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
 gi|53753738|emb|CAH15196.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Lens]
          Length = 698

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D  +    + T               ++++  L+I  + QV ++  I EV +D  + IG
Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452

Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249
            +  ++  +        A+                                     ++  
Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           + D    +  L ALE       ++ P L   + Q A+    G+ +    ++S+GAT+V  
Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
               + L  TP +   G+I + +Q     P        +P+   ++  T V + +G TIV
Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|319639388|ref|ZP_07994138.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
 gi|317399283|gb|EFV79954.1| type IV pilus biogenesis and competence protein pilQ [Neisseria
           mucosa C102]
          Length = 710

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
             N+      +K+++ L++    QV ++  I E      + +G +            GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGASGRTAWGSN 486

Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                 + S   +      +     ++       +    + A E
Sbjct: 487 WSNAQANHNTNASFNRGDVGYPTWSLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                +T++ P +     + A   SG +  Y+   SS+GATS+T     + L  TP +  
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605

Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+I + ++     P    V++        +  +T   +  GGT+++ G+ +++      
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLTTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +P+L  IP++G LF++        E+ I  TP ++  V
Sbjct: 666 KVPILGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|260551051|ref|ZP_05825255.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260405818|gb|EEW99306.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 758

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDFSVKGVLDRFS-------------------------FETVLHALERATAIRTLAEPT 276
              +   G     S                         +  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGTAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVIPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|218708199|ref|YP_002415820.1| type II secretory pathway subunit EpsD [Vibrio splendidus LGP32]
 gi|218321218|emb|CAV17168.1| Type II secretory pathway, component EpsD [Vibrio splendidus LGP32]
          Length = 674

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +     + +  + +  +        +  ++ + V+  L+I    QV ++  I E+     
Sbjct: 301 SSSQRNQVMISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359

Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
             +G Q         I  S++G S                                    
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDKTVDRVVTPSDGSKPYTVKETEK 419

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D+     +  G       +    +  ++ A+   +    L+ P++T +    ASF  G 
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479

Query: 292 QHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +    T S     +     +V   + G+ L   P +     + L+I+ EVS  +    A 
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598

Query: 407 ETEIFIAATPFLVK 420
           +  + +   P +++
Sbjct: 599 KKNLMVFIKPTIIR 612


>gi|148976513|ref|ZP_01813209.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
 gi|145964089|gb|EDK29346.1| Type II secretory pathway, component EpsD [Vibrionales bacterium
           SWAT-3]
          Length = 674

 Score =  178 bits (452), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 116/314 (36%), Gaps = 48/314 (15%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           +     + V  + +  +        +  ++ + V+  L+I    QV ++  I E+     
Sbjct: 301 SSSQRDKVVISAHSDTNSLVITAQPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDG 359

Query: 211 KQIGFQHS-------ITGSSSGPSKSFA-------------------------------- 231
             +G Q         I  S++G S                                    
Sbjct: 360 VNLGVQWGNLETGAMIQYSNTGASIGGVMVGLEEAKDTETTTAVYDKNGKFLGNETTTEQ 419

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D+     +  G       +    +  ++ A+   +    L+ P++T +    ASF  G 
Sbjct: 420 GDYSTLASALSGVNGAAMSVVMGDWTALISAVATDSNSNILSSPSITVMDNGEASFIVGE 479

Query: 292 QHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
           +    T      S+     +V   + G+ L   P +     + L+I+ EVS  +    A 
Sbjct: 480 EVPVLTGSTAGSSNDNPFQTVERKEVGIKLKVVPQINEGDSVQLQIEQEVSNVLGANGAV 539

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    E
Sbjct: 540 DV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTQVE 598

Query: 407 ETEIFIAATPFLVK 420
           +  + +   P +++
Sbjct: 599 KKNLMVFIKPTIIR 612


>gi|227114133|ref|ZP_03827789.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 684

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRV-----EMVSDTV-VLH 148
            ANV+        ++  +    + +  +   L R+     N +V        +D V VL 
Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312

Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           G+  +IQ  Q+    +           +T               ++V+  L+I    QV 
Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
           ++  IAEV+      +G Q +   +      +                           +
Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
            GG   +     + ++  +L AL + +    LA P++  +    A+F  G +       +
Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
           T S      +V     G+ L   P +     + L I+ EVS      +        ++  
Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + + 
Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611

Query: 414 ATPFLVK 420
             P +++
Sbjct: 612 IRPSIIR 618


>gi|329120652|ref|ZP_08249315.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327460876|gb|EGF07210.1| type IV pilus biogenesis protein PilQ [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 695

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/267 (18%), Positives = 106/267 (39%), Gaps = 29/267 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------ 223
           +K++  L++    QV ++  I E      ++IG +    GS+                  
Sbjct: 426 EKILEELDVPAR-QVMVETRIVEASDGFSREIGVKFGYAGSNGKNSWGSNWANAQANNNT 484

Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                   +  + +   +      +     ++   L   +    L A +     + ++ P
Sbjct: 485 NVNASQNNTNRTWTLNPNINLPTTAATSSVALVHALSSGALALELSAQQAQNKAKVISSP 544

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A   SG +  Y+  SSS   ++ +     + +  TP +   G+I + I+  
Sbjct: 545 RVLTQDRKEAVIESGTEVPYQEASSSGATST-SFKKAVLGMTVTPQITPDGQIIMDIKVN 603

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             + V        P    ++ DT   + +GGT++L G+ +++  +    +PLL  IP++G
Sbjct: 604 K-DSVNRNCGASEPCIDTKRLDTKAMVENGGTLILGGIYEEENSEGVSKVPLLGDIPVVG 662

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPV 422
            LF++   N  + E+ I  TP +V  V
Sbjct: 663 NLFKSRSRNTSKKELLIFITPRIVDNV 689


>gi|262170433|ref|ZP_06038111.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
 gi|261891509|gb|EEY37495.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus MB-451]
          Length = 567

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G V  + +         T            +  ++++  L+I  + QV
Sbjct: 259 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 317

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
            ++  I  V+   L ++G +  +  ++   S                             
Sbjct: 318 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 377

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+  +    ++ P L   + Q A    G +
Sbjct: 378 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 437

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
             Y    SS+GAT+V+     + L  TP +    R+ L +          +    G+  S
Sbjct: 438 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 496

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+
Sbjct: 497 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 556

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 557 LIFVTPKVV 565


>gi|294142779|ref|YP_003558757.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
 gi|293329248|dbj|BAJ03979.1| type IV pilus biogenesis protein PilQ [Shewanella violacea DSS12]
          Length = 643

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 63/305 (20%), Positives = 119/305 (39%), Gaps = 25/305 (8%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGEDQV 196
            +      +L G   ++  S+ +  + E   +      +    +  +++ +L+I    QV
Sbjct: 337 AKAADIAELLKGEDSSLLTSRGSATVDERTNTLLVKDTEDTLENIHRLIEVLDIPIR-QV 395

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAADFGG 236
            ++  +  V+ ++ + +G Q  IT        S                           
Sbjct: 396 LIEARMVTVKDNVSEDLGIQWGITDQQGTRGTSGSIEGAESIAGGLIPALADRLNVALPA 455

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +    F V  + D    +  L ALE+      +A P +   S Q A++   G  +  
Sbjct: 456 PAGAASIAFHVARLADGTILDMELSALEQENKGEIIASPRIMT-SNQKAAYIEQGVQIPY 514

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVR 354
             SSS+GA +V+     + L  TP +    R+ L ++        V+    G+  S   +
Sbjct: 515 VESSSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEITQDSQGEVVATPLGEAVSIDTQ 574

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T V +  G TIVL G+ + ++      +P+L  IP LG LFR++    E  E+ I  
Sbjct: 575 RIGTQVLVNHGETIVLGGIYQQNLISRVSKVPILGDIPFLGFLFRSTSDKNERQELLIFV 634

Query: 415 TPFLV 419
           TP ++
Sbjct: 635 TPKII 639


>gi|332535166|ref|ZP_08410973.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035385|gb|EGI71885.1| type II secretion outer membrane pore forming protein PulD
           [Pseudoalteromonas haloplanktis ANT/505]
          Length = 687

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/293 (20%), Positives = 100/293 (34%), Gaps = 47/293 (16%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S + V+  L+I    QV ++  I EV       +G Q            +  
Sbjct: 331 TAQPDTMRSLESVIERLDIR-RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGT 389

Query: 232 ADFGGKFVSEG---------------------------------------GDFSVKGVLD 252
               G                                             G   +   + 
Sbjct: 390 TVPVGSLAVAAEQAQDVTVTKNIIGTESGTVTPYTETTEGDYGPLASLLSGINGLALGVV 449

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSV 307
           +  +  ++ A+   T    LA P++T +  + AS   G +    T S +         +V
Sbjct: 450 KNDWGAIIQAVATDTNSNILATPSITTMDNEEASILVGQEVPIITGSQTGSNNANPFQTV 509

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ L  TP +     + L I+ EVS            S   R   TTV    GG 
Sbjct: 510 ERQEVGIKLIVTPQINDGSAVQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVMADDGGM 567

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +VL GL+ +D+Q+    +PLL  IPILG LFR++   R +  + +   P +++
Sbjct: 568 VVLGGLIDEDVQESVSKVPLLGDIPILGHLFRSTNTTRRKRNLIVFIRPTIIR 620


>gi|260718933|ref|YP_003225074.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
 gi|257762444|dbj|BAI33940.1| type II secretion protein EtpD [Escherichia coli O103:H2 str.
           12009]
          Length = 656

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 115/308 (37%), Gaps = 34/308 (11%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAG 192
           VL G+   I++  +    +E          +  +++             + V++ L+I  
Sbjct: 285 VLTGISSNIENDAKKSSSTEALRKGVTIKSHEQTNALILTGAPDVIRDLENVISQLDIRR 344

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------KFV 239
             QV ++  IAEV+      +G Q     S      S                    +  
Sbjct: 345 P-QVLVEAIIAEVQDADGLNLGIQWVNKHSGVTQFTSTGLPITTMVQTRQSDISDSDQSN 403

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +      +     + ++  +L AL  ++    LA P++  +    A+F  G +    + S
Sbjct: 404 TLSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSGS 463

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYR 352
            +T       +V     G+ L   P +     + L I+ EVS   +  +        ++ 
Sbjct: 464 QTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATFN 523

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LF +   +  +  + +
Sbjct: 524 TRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFSSKSEHAAKRNLML 583

Query: 413 AATPFLVK 420
              P +++
Sbjct: 584 FIRPTIIR 591


>gi|34979599|gb|AAQ83844.1| type IV pilus biogenesis secretin PilQ precursor [Legionella
           pneumophila 130b]
 gi|307609724|emb|CBW99235.1| type IV pilus [Legionella pneumophila 130b]
          Length = 698

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
            I     +D  VL    +    S R     +   +            +  +++  L+I  
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
           + QV ++  I EV +D  + IG +  ++  +        A+                   
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490

Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                             ++  + D    +  L ALE       ++ P L   + Q A+ 
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
              G+ +    ++S+GAT+V      + L  TP +   G+I + +Q     P        
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G LF N +   + 
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 669 EELLIFITPRII 680


>gi|262373971|ref|ZP_06067248.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262310982|gb|EEY92069.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 751

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 30/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG       + G      
Sbjct: 379 EAAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLINFTNVGSSLSKL 437

Query: 242 GGDFSVKGVLDRFS-----------------------FETVLHALERATAIRTLAEPTLT 278
              +   G     S                       +  ++ AL+  T    L+ P++ 
Sbjct: 438 AAGYLTGGAAGLGSAIGAGSSIVVGDYKEGANGSRKLYGALIQALKSNTKSNLLSTPSIV 497

Query: 279 AISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A    G    + T S +         T+V   D GV L   P +   G + L +
Sbjct: 498 TMDNEEAYIVVGQNVPFVTGSVTTNSTGVNPYTTVERKDVGVTLKVVPHIGEGGSVRLEV 557

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS                R   T+V    G T+VL GL+ D+    ++G+P+L  IP
Sbjct: 558 EQEVSAVQESRGQATDLVTSKRAIKTSVLADHGQTVVLGGLISDNSIHSRQGLPVLGDIP 617

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LFR      E+  + +   P +V
Sbjct: 618 YLGRLFRADSKTNEKRNLLVFIHPTIV 644


>gi|54296952|ref|YP_123321.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
 gi|53750737|emb|CAH12144.1| type IV pilus (Tfp) assembly protein PilQ [Legionella pneumophila
           str. Paris]
          Length = 698

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 117/312 (37%), Gaps = 30/312 (9%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAG 192
            I     +D  VL    +    S R     +   +            +  +++  L+I  
Sbjct: 372 QINYAKAADIAVLIKDKQNSLLSDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPV 431

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
           + QV ++  I EV +D  + IG +  ++  +        A+                   
Sbjct: 432 K-QVLIEARIVEVTKDFSQDIGIRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLN 490

Query: 234 ------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                             ++  + D    +  L ALE       ++ P L   + Q A+ 
Sbjct: 491 LDLAAAPLTGATPASVGIALAKLNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAV 549

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
              G+ +    ++S+GAT+V      + L  TP +   G+I + +Q     P        
Sbjct: 550 IESGEEIPYQEATSSGATAVAFKKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLG 608

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+   ++  T V + +G TIVL G+ K D  ++   IP   ++P++G LF N +   + 
Sbjct: 609 VPAIITKEIQTNVLVNNGQTIVLGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKN 668

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 669 EELLIFITPRII 680


>gi|261823291|ref|YP_003261397.1| outer membrane porin HofQ [Pectobacterium wasabiae WPP163]
 gi|261607304|gb|ACX89790.1| type IV pilus secretin PilQ [Pectobacterium wasabiae WPP163]
          Length = 424

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 74/439 (16%), Positives = 162/439 (36%), Gaps = 39/439 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNP--SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI 58
           M          +S  L  + P    A+         + I      +   +++++ +   +
Sbjct: 1   MNIRMLCRVATLSWLLLLTVPYQVGAEPSVSMAFENSPIPQVLQALADHQQLNVVIAPGV 60

Query: 59  ILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
              + + + +V               +        +G+ +V     +G  +L        
Sbjct: 61  TGNLSLRLAEV-------------PWQQALDIVLRMGKLSV---ERNGNVLLVFPAEHLA 104

Query: 119 DIAHLEMT----LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-- 172
                +      L + +   N+ V +    VV   +  ++Q  + A+  +   ++     
Sbjct: 105 SQQKEKDERMVELAQKLPLHNLSVALQYADVV--DVAASVQAQRGALLSTRGSVTVDKRT 162

Query: 173 ------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                   + A +  +  +  L++    QV L   I  +  + L+ +G    +   ++  
Sbjct: 163 NTLLIRDTEDALAQLEPWLKELDLPL-AQVQLAAHIVTISSEHLQALGVNWGLGEGNAAN 221

Query: 227 SKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                 +F      +    +       L+    +  L ALE+ + +  +A P L     Q
Sbjct: 222 KALRLNNFNVGLPVDTPAVNAGFHLARLNGRLLDLELMALEQESQVEIIASPRLFTAHQQ 281

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +AS   G +  Y+  S ++G+TS+   +  + +  TP +L  GRI L ++   + P   +
Sbjct: 282 TASIKQGTEIPYQVSSGASGSTSIEFKEAVLGMEVTPDILRAGRITLNLKISQNMPGQTI 341

Query: 344 ---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              + G+  +   ++  T V +  G TIVL G+ +   +     +P+L ++P+ G LFRN
Sbjct: 342 KQGDNGEALAIDKQEIQTQVTVADGETIVLGGIFQQQKKNSGSQVPILGEVPVFGHLFRN 401

Query: 401 SRFNREETEIFIAATPFLV 419
                   E+ I  TP L+
Sbjct: 402 HTQQHTRRELVIFITPTLI 420


>gi|149911345|ref|ZP_01899965.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
 gi|149805585|gb|EDM65588.1| putative type II secretory pathway, component EpsD [Moritella sp.
           PE36]
          Length = 699

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 54/293 (18%), Positives = 107/293 (36%), Gaps = 47/293 (16%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSK 228
                   + ++V+N L+I    QV ++  I E+        G Q          +  ++
Sbjct: 325 TAQPDVMRTLQQVINQLDIR-RAQVLVEAIIVEISEGDGINFGVQWLSEAGGTQYNNGTQ 383

Query: 229 SFAADFGGKF------------------------------------VSEGGDFSVKGVLD 252
                 G                                       +S     ++  +  
Sbjct: 384 VPLTTIGAGIYDAQDTTTTTTGTDAQGNPTSTTSTTTGDISTLAAALSGVNGLALGVMNS 443

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSV 307
             SF  ++ A    +    LA P++  +  Q ASF  G +    T SS          +V
Sbjct: 444 AKSFGAIIQASANDSNSNILATPSIMTLDNQEASFIVGEEVPVITGSSASSGNDNPFQTV 503

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ L  TP +     + L I+ EVS+ +   +     ++  R+ +TT+   SG T
Sbjct: 504 ERREVGIKLTVTPQINEGDAVQLTIEQEVSQVLGSTSVD--VTFAKRQVNTTILADSGQT 561

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +V+ GLL + + +    +P L  IP +G LF+++  + ++  + I     +++
Sbjct: 562 VVIGGLLDEQVIESVSKVPWLGDIPWIGNLFKSTSSSTKKRNLMIFIKATIIR 614


>gi|330966297|gb|EGH66557.1| general secretion pathway protein D [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 775

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 59/261 (22%), Positives = 96/261 (36%), Gaps = 19/261 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV       +G Q         S T  +   +       G    +    
Sbjct: 501 PLQVQIETRILEVSLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 560

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +        + +  L ALE     + L+ P+L  ++ Q A    G        S +T  
Sbjct: 561 DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 620

Query: 305 TS------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRK 355
           ++      V     GV+L   P +   G + + IQ +VS      N       P    R 
Sbjct: 621 STNTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSNADTNTNNNDANGNPRISSRS 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 681 VSTQVAAQSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTTKSKGRTELIVLIT 740

Query: 416 PFLVKPVAMRDLSRPDDHYSV 436
           P ++   +     +  D Y  
Sbjct: 741 PRVI--TSSSQARQVTDDYRQ 759


>gi|294341497|emb|CAZ89914.1| putative general secretion pathway protein [Thiomonas sp. 3As]
          Length = 884

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/326 (20%), Positives = 114/326 (34%), Gaps = 43/326 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230
           +V+  L++    QV ++  IAEV  +   Q+G Q                GS+ G   S 
Sbjct: 426 RVIERLDVR-RAQVYVEALIAEVDANKAAQLGIQWQAIAGSAGNQNAIIGGSNYGTGGSN 484

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF------------------SFETVLHALERATAIRTL 272
             +        G   +                          +   + + L+       L
Sbjct: 485 IINLQAAISGGGSSAATALASGSLAIPNGLNIGILHNVAGMATLGLLANFLQTQDGANIL 544

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLS 324
           + P L  +  + A    G    + T   +        T   ++   D G+ L   P + +
Sbjct: 545 SAPNLMTLDNEEAKIVVGQNVPFVTGQYAQTGSSATVTPFQTIERKDVGLTLKVRPQITA 604

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G I + +  EVS      NA  +     R   T V +  G TIVL GL++D++ Q    
Sbjct: 605 GGAIKMDVYQEVSSISSTTNAAGI-ITNKRSIQTAVLVNDGQTIVLGGLMQDNVSQNNSK 663

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           IP L  IP LGALFR++    ++T++ +   P +V+     D          +       
Sbjct: 664 IPGLGDIPGLGALFRSNSRTAQKTDLMVFLRPIVVR---TEDQGNALSQQRYDTMRGMQD 720

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIG 470
             ++   +G  E       + +G  G
Sbjct: 721 RAQLPAQFGMPEMPGPVLPSLQGDTG 746


>gi|153825107|ref|ZP_01977774.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
 gi|149741253|gb|EDM55295.1| fimbrial assembly protein [Vibrio cholerae MZO-2]
          Length = 578

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +   +++  L+I  + QV ++  I  V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIHEIIESLDIPVK-QVQIEARIVTVK 338

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|26991756|ref|NP_747181.1| type IV pilus secretin PilQ [Pseudomonas putida KT2440]
 gi|24986864|gb|AAN70645.1|AE016708_6 type IV pili biogenesis protein PilQ [Pseudomonas putida KT2440]
          Length = 420

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 151/418 (36%), Gaps = 13/418 (3%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +++    T++SI L S+ P   + P         +      +     +++  +  +   V
Sbjct: 4   WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            + +QD  V      D+V+ S     L  +  G   ++    +         + +   AH
Sbjct: 63  TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQALDAH 117

Query: 123 LEMTLRRFIA--DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
           L+   R  +    +            L G            E + T +     ++ A   
Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLAGLEGDGIPPASLS-VDERTNTLVVHLPADRLAEMR 176

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
             +++  L++    QV ++  I E   D  K +G +                        
Sbjct: 177 --QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLER 233

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G    +  +      +  L A+E++     +++P +     ++A    G +  Y+  S 
Sbjct: 234 AGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQ 293

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + +  V
Sbjct: 294 S-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKV 352

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP +
Sbjct: 353 RVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410


>gi|292493619|ref|YP_003529058.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
 gi|291582214|gb|ADE16671.1| general secretion pathway protein D [Nitrosococcus halophilus Nc4]
          Length = 767

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 75/338 (22%), Positives = 133/338 (39%), Gaps = 24/338 (7%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDI 209
                 ++ V +     + +      +    K+++ L        QV ++ TIAEV+   
Sbjct: 429 ADDDADEKEVRIIADVENNALLISATSRDYDKILSALRQLDIPPRQVLVEATIAEVQLTD 488

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------GDFSVKGVLDRFSFETV 259
             Q G Q          + + A +F       G          G      + D      +
Sbjct: 489 NLQYGLQWFFRNEVGEFTGTGAVNFSTDVGDNGFLQGVEGLLGGGGFTYALTDDSIVRAL 548

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDY 312
           L  L   + +  L+ P L A+  Q+A+   G Q    T          +T  + V   D 
Sbjct: 549 LRTLASDSKLNVLSSPQLLALDNQTAAIRVGDQVPILTGQTAGLAGTGNTLTSQVQFRDT 608

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           GV+L  TP V + GR+ L I+ EV++   PV   +     ++  R  ++ V + SG TIV
Sbjct: 609 GVLLTVTPRVNAGGRVTLEIRQEVTDVGDPVTVGSDIQNFTFLQRTFESVVTVQSGETIV 668

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GL++D       G+P L K+P +G LF ++  +++ TE+ +  TP +V+     +   
Sbjct: 669 LGGLIRDRDSFTDSGVPFLYKLPFIGPLFGSTTRDKQRTELIVLMTPRVVR--DQHEARL 726

Query: 430 PDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
             + +  +    +     +  I   K   E    + KG
Sbjct: 727 VTEEFRQKLRNASDVAEEMGGIAPQKVNEEEISPSTKG 764


>gi|258620495|ref|ZP_05715533.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
 gi|258587374|gb|EEW12085.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM573]
          Length = 572

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G V  + D         T            +  ++++  L+I  + QV
Sbjct: 264 KASDIAAMIGGEGNVNMLSDRGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 322

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
            ++  I  V+   L ++G +  +  ++   S                             
Sbjct: 323 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 382

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+  +    ++ P L   + Q A    G +
Sbjct: 383 LASTSANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 442

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
             Y    SS+GAT+V+     + L  TP +    R+ L +          +    G+  S
Sbjct: 443 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 501

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+
Sbjct: 502 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 561

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 562 LIFVTPKVV 570


>gi|158520346|ref|YP_001528216.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
 gi|158509172|gb|ABW66139.1| type IV pilus secretin PilQ [Desulfococcus oleovorans Hxd3]
          Length = 987

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 103/247 (41%), Gaps = 23/247 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------------D 233
             QV +K  I E      ++ G +  I    + P+ +                       
Sbjct: 743 TPQVMIKARIVETSSSFSREFGTEWGIDNRYNSPNINIGTDGAYRDEMGGTYTYDVALNS 802

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 +  G    + +   FS +  L  +E    ++ ++ P +  +  ++A+ + G  +
Sbjct: 803 LSSPVQNLIGINFARIIGTPFSLDAKLSLMESTGDVKIISTPKVVTLDNKTATISQGIDY 862

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y  V    G   V      + L  TP V    RI +++  + ++    +N     S+  
Sbjct: 863 PYTVV--EDGEADVKWKTIDLNLDVTPHVTPDDRISMKLNIQKNDVGEIINGEQ--SFNT 918

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++A T + +  G T+V+ G++K+     + G+P +SKIP+LG LF+    + E++E+ I 
Sbjct: 919 KRASTELLVNDGDTVVIGGIIKEREGAGERGVPWISKIPVLGNLFKYKTRSDEKSELLIF 978

Query: 414 ATPFLVK 420
            TP +V+
Sbjct: 979 ITPNVVR 985


>gi|254228550|ref|ZP_04921975.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262392666|ref|YP_003284520.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
 gi|151938932|gb|EDN57765.1| general secretion pathway protein D [Vibrio sp. Ex25]
 gi|262336260|gb|ACY50055.1| general secretion pathway protein D/type II secretion outermembrane
           pore forming protein (PulD) [Vibrio sp. Ex25]
          Length = 672

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 137/383 (35%), Gaps = 62/383 (16%)

Query: 96  QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           + N ILI  D K    L  ++ + D+        R +   N + E + D  VL G+   +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289

Query: 155 QDSQRAVELSETFLSQS--------------GRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           Q  ++  + +                            ++ + V+  L+I    QV ++ 
Sbjct: 290 QAEKQVGQKASGAQRGEVVIAAHAATNALVLTAPPDIMNALQDVIAQLDIR-RAQVLIEA 348

Query: 201 TIAEVRRDILKQIGFQHS--------------------------------------ITGS 222
            I E+       +G Q                                          G 
Sbjct: 349 LIVEMSEGDGINLGVQWGSLETGAVIQYGNSGAPIGQVMVGLEEAKDQTRTEYYTNANGE 408

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +    + + D+     +  G       +    +  ++ A+   +    L+ P++T +  
Sbjct: 409 RTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALVSAVATDSNSNILSSPSITVMDN 468

Query: 283 QSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS
Sbjct: 469 GEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVS 528

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG L
Sbjct: 529 NVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIPVLGHL 587

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+++    E+  + +   P +++
Sbjct: 588 FKSTSTQTEKRNLMVFIKPTIIR 610


>gi|156972923|ref|YP_001443830.1| general secretion pathway protein D [Vibrio harveyi ATCC BAA-1116]
 gi|156524517|gb|ABU69603.1| hypothetical protein VIBHAR_00601 [Vibrio harveyi ATCC BAA-1116]
          Length = 658

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 154/458 (33%), Gaps = 88/458 (19%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        ++   S   M      + +        
Sbjct: 139 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 198

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 199 EFLEPKIVADDRTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 258

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 259 VLKGVSDNLQAEKQAGQNGASSAQRGEVVIAAHEATNSLVLTAQPDIMMALQDVISQLDI 318

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADF------------ 234
               QV ++  I E+       +G Q     +      G + +   +             
Sbjct: 319 R-RAQVLIEALIVEMSEGDGINLGVQWGNLDTGAVIQYGNTGAQIGNVMVGLEEAKDTTK 377

Query: 235 ---------------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                           + GG       +    +  ++ A+   +
Sbjct: 378 TESYWDEDANGGSGDWNTREYIEEGDYSTLAAALGGVNGAAMSIMMGDWTALITAVSSDS 437

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTV 322
               L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P +
Sbjct: 438 NSNILSSPSITVMDNGEASFIVGEEVPVITGSTSGSNNDNPFQTVDRKEVGIKLKVVPQI 497

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +
Sbjct: 498 NEGDSVQLTIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESE 556

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +PLL  IP++G LF+++    E+  + +   P +++
Sbjct: 557 SKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 594


>gi|145298443|ref|YP_001141284.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142851215|gb|ABO89536.1| S-protein secretion component D [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 719

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 115/309 (37%), Gaps = 23/309 (7%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197
                +     V+T+        +       +          ++++ LL        QV 
Sbjct: 407 NSGRAIPKSNNVQTMSVMTDQYRVVVDAKRNAIIFSGRYGDYQRLIELLQFVDQRPRQVL 466

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           L+  IAEV+      +GF+          +K          + + G+ ++ GV       
Sbjct: 467 LQAVIAEVKLTNDSSLGFEW-------NVNKGDITGGTSGLIQQTGNLNLAGVFG--DVT 517

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------ATSVTT 309
               A       + L+ P L  +  ++AS   G Q + KT   S G         TS   
Sbjct: 518 AKFAAALSEGNAKVLSSPRLVVLDQETASIKIGDQIVVKTGEISNGSSGNDPQVTTSYKY 577

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D G+ L  TP++   G I + I  E+S    G   GD P    R   + +   SG T+ 
Sbjct: 578 IDTGLSLEITPSINDDGLIEMVISQEISSVSAG--GGDTPPINRRAVQSKLLADSGKTVY 635

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           L GLL       +E +PLL  IP+LG LF+      E+TE+ +  TP+++   +  +   
Sbjct: 636 LGGLLSQSNTNNEEKVPLLGDIPLLGNLFKYQTKKIEKTELVLLITPYVI--TSKEEAEF 693

Query: 430 PDDHYSVED 438
             D +    
Sbjct: 694 YTDQFRTLS 702


>gi|300114921|ref|YP_003761496.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
 gi|299540858|gb|ADJ29175.1| general secretion pathway protein D [Nitrosococcus watsonii C-113]
          Length = 833

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 67/289 (23%), Positives = 113/289 (39%), Gaps = 20/289 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFS 246
             QV ++ TIAEV      Q G Q   T   +    +           GG      G   
Sbjct: 539 PRQVLVEATIAEVALTGSLQYGLQWYFTNDLASGQGAGGQGALPALGEGGLQALMAGGGF 598

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                D      +L  L     +  L+ P L A+  Q+A    G Q   +   ++    +
Sbjct: 599 TYAFADGGVVRALLRLLASENKVEILSSPQLLALDNQTAEIRVGDQVPIQQGQTTGIGGT 658

Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKAD 357
                  D GV+L  TP V + GR+ + +  EV++             G  P++  R   
Sbjct: 659 TQQIRYRDTGVLLTVTPRVNAGGRVTMELTQEVTDVGGTSLPGGATTVGGNPTFLQRNFQ 718

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V + SG TIVL GL++++    + G+P L K+P++G LF  +  +R+ TE+ +  TP 
Sbjct: 719 SVVTVQSGETIVLGGLIRNNDAFNQSGVPFLYKLPLIGPLFGTTTRSRQRTELVVLMTPR 778

Query: 418 LVKPVAMRDLSRPD--DHYSVEDDAKAFFFN---RVNKIYGPKEASEVE 461
           +V+      L   +  +      D          ++ K  G K +   +
Sbjct: 779 VVRDQYEARLVTEELREKLKNASDVAEKTGGITFKIEKENGEKPSPSTD 827


>gi|56461571|ref|YP_156852.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
 gi|56180581|gb|AAV83303.1| Type II secretory pathway, component PulJ [Idiomarina loihiensis
           L2TR]
          Length = 427

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 125/328 (38%), Gaps = 37/328 (11%)

Query: 103 GHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
                 +L+++     D+A L    ++     +  + V+  ++T++L     T +     
Sbjct: 123 NEYHSILLSVNFAKASDLAKLLKNEQQSFLSPNGAVSVDARTNTLILR---DTPEQLATI 179

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            +L                     +N L++  + QV ++  +  V+ ++ K++G +  ++
Sbjct: 180 RQL---------------------VNDLDVPVK-QVLIEARMVTVKANVSKELGIRWGVS 217

Query: 221 GSSSGPSKSFAA-------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                  +   +       D      +     ++  + D    +  L ALE+      + 
Sbjct: 218 EYGLAIPEDAGSFVKGMQVDLPTAAPAGTFSANLARLSDDILLDLELTALEQENKAEIIT 277

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P +   + Q A    G +  Y    ++ GAT+V      + L  TP +     + + + 
Sbjct: 278 SPKIFTSNQQPAYIEQGTEIPYVET-AAHGATAVQFKKAVMGLSVTPQITPNNHVLMELT 336

Query: 334 TEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
              +     V     P+     ++  T V   +G TIVL G+ ++        +P+L  +
Sbjct: 337 ITQNTRGDTVATPTGPAVAIDTQEMSTRVLAKNGETIVLGGIFQEHNLNDDSRVPILGSL 396

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P++G LF + +   E+ E+ I  TP ++
Sbjct: 397 PLIGKLFSHQQQRDEKRELMIFVTPTIL 424


>gi|90580860|ref|ZP_01236662.1| putative fimbrial assembly protein [Vibrio angustum S14]
 gi|90437931|gb|EAS63120.1| putative fimbrial assembly protein [Vibrio angustum S14]
          Length = 574

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 144/416 (34%), Gaps = 39/416 (9%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
                +      I      ++ ++  +   V + + D  V  P   D+++ S        
Sbjct: 168 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 221

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150
           K V  + +++            ++  +      ++LR  +   N   +      +L G  
Sbjct: 222 KRVRGSVLLVAPKAELTASEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAALLSGST 280

Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             V  + +         T             S K +++ L+I  + QV ++  I  +   
Sbjct: 281 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 339

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245
            + ++G +  +  S      +      G   S G                          
Sbjct: 340 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGEDATVDDFLNVNLGAGAGAASIA 397

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                L     +  L AL+       ++ P L   + ++A    G +  Y    SS+GAT
Sbjct: 398 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 456

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363
           SV+     + L  TP +    ++ L ++         +    G   S   ++  T V + 
Sbjct: 457 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 516

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ +  +  +   +PLL  IP+LGALFR+      + E+ I  TP +V
Sbjct: 517 NGETVVLGGIYQHSMTNVTRKVPLLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 572


>gi|194365988|ref|YP_002028598.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194348792|gb|ACF51915.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 793

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/276 (23%), Positives = 114/276 (41%), Gaps = 30/276 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++ L+     QV ++  I EV +    ++G Q  +    +     F    GG  ++  
Sbjct: 381 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTNGGSGLNTA 439

Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                              G  ++ GV    + + + +AL+       L+ P L  +  +
Sbjct: 440 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNLMTLDNE 499

Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS   G    + +          S+    ++   D G+ L   P +   G + L I  E
Sbjct: 500 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 559

Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS          +      R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+L
Sbjct: 560 VSSIDAQSANSTVGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 619

Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
           GALFR+    R +T + +   P +V+ P A + L+R
Sbjct: 620 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 655


>gi|299771842|ref|YP_003733868.1| general secretion pathway protein D [Acinetobacter sp. DR1]
 gi|298701930|gb|ADI92495.1| general secretion pathway protein D [Acinetobacter sp. DR1]
          Length = 757

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 381 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 439

Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276
              +                       L   +F         ++ AL+  T    L+ P+
Sbjct: 440 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKSNTKSNLLSTPS 499

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 500 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 559

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD++  ++GIP LS 
Sbjct: 560 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 619

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 620 IPYVGRLFRSDSRSNTKRNLLVFIHPTIV 648


>gi|157372838|ref|YP_001480827.1| putative outer membrane porin HofQ [Serratia proteamaculans 568]
 gi|157324602|gb|ABV43699.1| type IV pilus secretin PilQ [Serratia proteamaculans 568]
          Length = 413

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 121/297 (40%), Gaps = 25/297 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194
            V        A E++E   +Q G   ++  +  + K  N + I                 
Sbjct: 117 SVTLPLSHADAEEVAENLNAQGGILLSERGSVVADKRTNAVLIRDTASIVALLTQRIGEM 176

Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFS 246
                QV L   I  +  + L+++G +  +       S      F        S      
Sbjct: 177 DAPLAQVQLATHIVTINSESLRELGVRWGLAPDDRPASSWQMDGFNVGLPLERSAVSAGF 236

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               +     +  L ALE+   +  +A P L   + Q+AS   G +  Y+  S S+GATS
Sbjct: 237 HLARIGGRLLDLELMALEQENRVEIIASPRLLTANLQTASIKQGTEIPYEVNSGSSGATS 296

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPS 364
           +   +  + +  TP +L  GRI L +Q   + P   ++  AG+  +   ++  T V +  
Sbjct: 297 MEFKEAVLGMEVTPKILPNGRITLTLQISQNMPGRSISRAAGETLAIDKQEIKTQVTVKD 356

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           G T+VL G+ +    +  + +P +S +P+LG+LF+ S    +  E+ I  TP L+K 
Sbjct: 357 GETVVLGGVFQRHSAEGADKVPGISDVPLLGSLFKQSSKQHKRRELVIFITPTLIKA 413


>gi|17547833|ref|NP_521235.1| general secretion pathway protein D [Ralstonia solanacearum
           GMI1000]
 gi|17430138|emb|CAD16823.1| probable general secretory pathway d transmembrane protein
           [Ralstonia solanacearum GMI1000]
          Length = 805

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/294 (23%), Positives = 110/294 (37%), Gaps = 44/294 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 429 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVIAAT 488

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 489 VGSGGIGSTAAQTALGSITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 548

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 549 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGMV 608

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 609 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVIANDGQVIVLGGLLEDNYQDSEQKVPG 668

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAK 441
           L  IP+LGALFR+    R++T + +   P++++  A    +  D+ Y+   DA+
Sbjct: 669 LGDIPVLGALFRSESKTRKKTNLLVFLRPYILR-TAEATGALSDNRYNYMRDAQ 721


>gi|17547690|ref|NP_521092.1| fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
 gi|17429995|emb|CAD16680.1| probable fimbrial type-4 assembly signal peptide protein [Ralstonia
           solanacearum GMI1000]
          Length = 714

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E      + +G +      ++G                            
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKTNGAGYGNTYSNVVSPVTKDATWDNSAAVSL 521

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G + L    +V++  +G    +  +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     +PLL  IP+LG LF+++    + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKVPLLGDIPVLGNLFKSTAKTNDRTEL 698

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 699 LVFLTPRVL 707


>gi|15642625|ref|NP_232258.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587503|ref|ZP_01677270.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121727577|ref|ZP_01680685.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|147673064|ref|YP_001218123.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|153217486|ref|ZP_01951197.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|153820291|ref|ZP_01972958.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|153821537|ref|ZP_01974204.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|153830200|ref|ZP_01982867.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227082746|ref|YP_002811297.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|254851169|ref|ZP_05240519.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|298500547|ref|ZP_07010351.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
 gi|9657220|gb|AAF95771.1| fimbrial assembly protein [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548234|gb|EAX58302.1| fimbrial assembly protein [Vibrio cholerae 2740-80]
 gi|121630068|gb|EAX62473.1| fimbrial assembly protein [Vibrio cholerae V52]
 gi|124113543|gb|EAY32363.1| fimbrial assembly protein [Vibrio cholerae 1587]
 gi|126509166|gb|EAZ71760.1| fimbrial assembly protein [Vibrio cholerae NCTC 8457]
 gi|126520922|gb|EAZ78145.1| fimbrial assembly protein [Vibrio cholerae B33]
 gi|146314947|gb|ABQ19486.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|148874303|gb|EDL72438.1| fimbrial assembly protein [Vibrio cholerae 623-39]
 gi|227010634|gb|ACP06846.1| fimbrial assembly protein [Vibrio cholerae M66-2]
 gi|227014518|gb|ACP10728.1| fimbrial assembly protein [Vibrio cholerae O395]
 gi|254846874|gb|EET25288.1| fimbrial assembly protein [Vibrio cholerae MO10]
 gi|297540716|gb|EFH76773.1| fimbrial assembly protein [Vibrio cholerae MAK 757]
          Length = 578

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|254225379|ref|ZP_04918990.1| fimbrial assembly protein [Vibrio cholerae V51]
 gi|125622013|gb|EAZ50336.1| fimbrial assembly protein [Vibrio cholerae V51]
          Length = 578

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 398

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|104779612|ref|YP_606110.1| type IV pili biogenesis protein PilQ [Pseudomonas entomophila L48]
 gi|95108599|emb|CAK13293.1| putative type IV pili biogenesis protein PilQ [Pseudomonas
           entomophila L48]
          Length = 412

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 66/416 (15%), Positives = 149/416 (35%), Gaps = 22/416 (5%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M+S    +        P         +      +     I++  +  +  ++ + +++  
Sbjct: 1   MLSGVRAALAAEFQGEPMSLNFQDVEVRGVLQVMADYAGINLVASDAVQGRITLRLEE-- 58

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V      D+V+ S     L  +  G   +I    +  +      L +   A LE   R  
Sbjct: 59  VPWDQALDLVLRSKG---LGRRQEGNVLLIAPIAELAEQSRGAHLEQALDARLEPLRREL 115

Query: 131 IADSNIRVEMVS--------DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           I   + +   ++        D  +L G      D++    +      + G  +       
Sbjct: 116 IPVYHAKASDLAELLLASLADDGILAGRGSLSVDARTNTLVVAQPADRLGEIR------- 168

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L++    QV ++  I E   D  K +G +                          
Sbjct: 169 RLVAQLDVPVR-QVMIEARIVEANIDYEKALGVRWGGPLYGQDNRLGSELFVDLGVERAT 227

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               V  +      +  L A+E++     +++P +     ++A    G +  Y+  + S 
Sbjct: 228 SALGVGLLRSDVLLDLELSAMEKSGNGEIISQPRVVTADKETARILKGTEVPYQETTKS- 286

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           GATS++  +  + L  TP +   G++ + ++    EP       ++P  R  + +  V +
Sbjct: 287 GATSISFREASLSLEVTPQITPDGKVIMEVRVTKDEPDFVNALNNVPPIRKNEVNAKVRV 346

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP +
Sbjct: 347 TNGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 402


>gi|254369170|ref|ZP_04985182.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122120|gb|EDO66260.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 590

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 73/416 (17%), Positives = 155/416 (37%), Gaps = 34/416 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPCIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
            I EV R    ++GF + +       + G     +        +     +  G       
Sbjct: 350 RIVEVLRTSALELGFNYDVVDPSGRVNIGLYTFNSNPNSAPGPTPTPVDTFVGTTAKLAY 409

Query: 252 ---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V 
Sbjct: 410 TIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAVA 468

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVELP 363
             +  + L  TP +   G I + I    +                P  + R+  T V   
Sbjct: 469 FQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMTK 528

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 DGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584


>gi|253998742|ref|YP_003050805.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985421|gb|ACT50278.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 675

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 79/468 (16%), Positives = 169/468 (36%), Gaps = 63/468 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P   E   A I +    + +   I+  L+K I          V +   +  D +     T
Sbjct: 185 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 241

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139
             L  K + + + ++  +  +++ +          L       +  TL+  +   ++ V+
Sbjct: 242 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 301

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+             + ++E  ++ +                     + +V L+
Sbjct: 302 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 336

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248
           + + E+ R  L+++G  +    S +       +  G                  G  ++ 
Sbjct: 337 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 396

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305
                 S    ++  +    +  ++ P +   + + A    G +    T +S+     + 
Sbjct: 397 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 456

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362
           +VT  D G+ L   P +     + ++I  EVS   +     N   + +   R A T + L
Sbjct: 457 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 516

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI +A TP ++   
Sbjct: 517 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 573

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
              ++ RPD       +   ++    N I    + +   G   + A G
Sbjct: 574 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSQAASG 613


>gi|50083568|ref|YP_045078.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
 gi|49529544|emb|CAG67256.1| putative general secretion pathway protein [Acinetobacter sp. ADP1]
          Length = 772

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/270 (24%), Positives = 108/270 (40%), Gaps = 33/270 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L++   +QV ++  I EV  D   Q+G Q ++   +SG      ++ G    S 
Sbjct: 383 EAAIQQLDVR-REQVLIEAAIIEVSGDDSDQLGIQWALGDLNSGVGLLSFSNVGASLASI 441

Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276
                                   G  F+V    +   ++  ++ AL+  T    L+ P+
Sbjct: 442 AAGYASTGTAGAAAAIASGTNSGNGATFAVGDFSNSRKAYGALIQALKSNTKSNVLSTPS 501

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIG 329
           +  +  + A    G    + T S STG        T+V   D GV L   P +   G + 
Sbjct: 502 IVTMDNEEAYIVVGQNVPFVTGSVSTGSTGTINPYTTVERKDVGVTLKVIPHIGENGTVR 561

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L ++ EVS+               R   T V    G T+VL GL+ D+    ++GIP LS
Sbjct: 562 LEVEQEVSDVQSSKGQATDLVTNKRAIKTAVLAEHGQTVVLGGLISDNTSLTRQGIPGLS 621

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP LG LFR    + E+  + +   P ++
Sbjct: 622 NIPYLGRLFRADSKSNEKRNLLVFIHPTII 651


>gi|325204768|gb|ADZ00222.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240355]
          Length = 761

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 99/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 GDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|83749448|ref|ZP_00946440.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|207738427|ref|YP_002256820.1| gspd-related protein [Ralstonia solanacearum IPO1609]
 gi|83723885|gb|EAP71071.1| General secretion pathway protein D [Ralstonia solanacearum UW551]
 gi|206591793|emb|CAQ58699.1| gspd-related protein [Ralstonia solanacearum IPO1609]
          Length = 657

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/467 (18%), Positives = 161/467 (34%), Gaps = 58/467 (12%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  +  + P   E + A +      + +   ++   +K   ++    V  V + + T A 
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           VV            V     + ++     +             +   +L   D   +  T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +   +I V+   + +V+      IQ +++ V + E                     
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                 E +V L+V I EV+R  L+ +G Q     S +  + S         +       
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
           +   +   +    ++A         LA P +   + + A    G +    T +S+     
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
           A +V   D G+ L   PTV     + +RI  EVS+    V   +         R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558

Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQN 464
           P    +L   +     E   +        R      P         +
Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPS 605


>gi|229524610|ref|ZP_04414015.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
 gi|229338191|gb|EEO03208.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae bv. albensis
           VL426]
          Length = 571

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA +V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 451 GAPTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|254285824|ref|ZP_04960786.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
 gi|150424006|gb|EDN15945.1| fimbrial assembly protein [Vibrio cholerae AM-19226]
          Length = 578

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 338

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S                                    +  
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|161830646|ref|YP_001597710.1| type II and III secretion system family protein [Coxiella burnetii
           RSA 331]
 gi|161762513|gb|ABX78155.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 331]
          Length = 349

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/241 (25%), Positives = 108/241 (44%), Gaps = 4/241 (1%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + +++ L+I    QV +K  I  +    L  +G       +++  +     D     +  
Sbjct: 90  QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148

Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G  D  +    +    +  L ALE+    + L+ P L   + Q+A     G+ +     +
Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TSVT     + L  TP VL   RI L++     +    +    +P+ + ++  T V
Sbjct: 208 GQGNTSVTFKKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  T+VL G+ +   QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ 
Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326

Query: 421 P 421
           P
Sbjct: 327 P 327


>gi|157377488|ref|YP_001476088.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
 gi|157319862|gb|ABV38960.1| general secretion pathway protein D [Shewanella sediminis HAW-EB3]
          Length = 724

 Score =  178 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 61/304 (20%), Positives = 110/304 (36%), Gaps = 46/304 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  ++T             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHADTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWAT 373

Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
                    +     G                                          + 
Sbjct: 374 AAGGGTQFNNLGPTIGEIGAGVWQAQEKEASQTCTGSGDNKTCTDNPATQGDITLLAQAL 433

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +    T S+S
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSTS 493

Query: 302 T-----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           +        +V   + GV L   P +     + L I+ EVS            ++  R+ 
Sbjct: 494 SSSNTNPFQTVERKEVGVKLKVVPQINEGTSVKLTIEQEVSGINGKTGVD--VTFATRRL 551

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV   SG  +VL GL+K+++Q+  + +P L  +PI+G LF++S     +T + +   P
Sbjct: 552 TTTVMADSGQIVVLGGLIKEEVQESVQKVPFLGDLPIIGHLFKSSSSGTRKTNLMVFIKP 611

Query: 417 FLVK 420
            +++
Sbjct: 612 TIIR 615


>gi|215919282|ref|NP_820868.2| type II and III secretion system family protein [Coxiella burnetii
           RSA 493]
 gi|206584166|gb|AAO91382.2| type 4 pili secretin (outer membrane porin) [Coxiella burnetii RSA
           493]
          Length = 353

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 109/246 (44%), Gaps = 4/246 (1%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + +++ L+I    QV +K  I  +    L  +G       +++  +     D     +  
Sbjct: 94  QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152

Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G  D  +    +    +  L ALE+    + L+ P L   + Q+A     G+ +     +
Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TSVT     + L  TP VL   RI L++     +    +    +P+ + ++  T V
Sbjct: 212 GQGNTSVTFKKATLRLKVTPVVLPGKRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  T+VL G+ +   QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ 
Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330

Query: 421 PVAMRD 426
           P   + 
Sbjct: 331 PYEKKS 336


>gi|148550155|ref|YP_001270257.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
 gi|148514213|gb|ABQ81073.1| type IV pilus secretin PilQ [Pseudomonas putida F1]
          Length = 420

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 66/420 (15%), Positives = 152/420 (36%), Gaps = 17/420 (4%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +++    T++SI L S+ P   + P         +      +     +++  +  +   V
Sbjct: 4   WMKYLLATLLSIPLASATPYQGE-PLSLNFQDVEVRAVLQVLADYAGVNLVASDAVQGSV 62

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            + +QD  V      D+V+ S     L  +  G   ++    +         + +   A 
Sbjct: 63  TLRLQD--VPWDQALDLVLRSKG---LSRRQEGNVLLVAPAAEFAAQSADARVSQVLDAQ 117

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLH----GMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           L+   R  +   + +   ++  ++      G+                +L      +   
Sbjct: 118 LQPLRRELLPIHHAKAADLAQLLLASLEGGGIPTGSLSVDERTNTLVVYLPADRLAE--- 174

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              ++++  L++    QV ++  I E   D  K +G +                      
Sbjct: 175 --MRQLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGL 231

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G    +  +      +  L A+E++     +++P +     ++A    G +  Y+  
Sbjct: 232 ERAGSSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQET 291

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           S S GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + + 
Sbjct: 292 SQS-GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNA 350

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP +
Sbjct: 351 KVRVADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 410


>gi|317484811|ref|ZP_07943707.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
 gi|316923941|gb|EFV45131.1| general secretion pathway protein D [Bilophila wadsworthia 3_1_6]
          Length = 665

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 83/463 (17%), Positives = 150/463 (32%), Gaps = 71/463 (15%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +    A  P + +A A +  +   +  G    + +       L              T A
Sbjct: 182 TLALTAPAPNVAKAMAFLEQVEASDTAGTSATLGLQYGDSKTLA------------ATLA 229

Query: 78  DVVVHSPRTMYLFGKNVGQA-NVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSN 135
            ++         + K      +++L       +L   D            +L        
Sbjct: 230 KILKSRDEE---YAKKGRPTVSLVLADERTNSLLIYGDPEAIGMARDAVGSLDIPTPKGK 286

Query: 136 IRVE----MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             V       +    L  ++ T+ + QRA    E     +  ++     + K  N L + 
Sbjct: 287 GDVHLISLSNAKAEDLAQVINTLVERQRAAGT-EDQKPDTVLSKDIKVVADKSTNSLVVT 345

Query: 192 GE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                                QV ++  I EV  +     G   +I G++   +      
Sbjct: 346 ARPDEFEALSNIVAKLDVVRKQVFIEALIMEVSSEASFSFGINWAIGGNTGDAAIVGGVS 405

Query: 234 FGGKFVSEGGDFS-------------------VKGVLDRFSFETVLHALERATAIRTLAE 274
             G  VS     +                   +      ++ +++L+A+   + +  LA 
Sbjct: 406 LNGGAVSLSSSGANKTVSLPAGVSIGAILKDAITVGNTSYNIQSILNAVRGNSDVDVLAT 465

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLHFTPTVLSPGRIG 329
           P L  +  + AS        +   S++      T       D GV L  TP +   G + 
Sbjct: 466 PQLLTLDNEEASVEVVDNIPFTKESTTRNDNDFTTQSMDYKDVGVKLKITPRISDDGSLR 525

Query: 330 LRIQTEVSEPVIG----VNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           L ++ EVS    G     N   +  P+ R R   TT+ L    T V+ GLL D     + 
Sbjct: 526 LEVEQEVSRVTQGLITLTNGDQLVAPTTRKRLVKTTILLQDSQTAVIGGLLDDQKTYNQS 585

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P L  IP+LG LF++      +T +FI  TP +++  A   
Sbjct: 586 EVPGLGSIPVLGWLFKSRNKKSTQTNLFIFITPKVIRNAADSA 628


>gi|240949528|ref|ZP_04753868.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
 gi|240296101|gb|EER46762.1| type II secretory pathway, component HofQ [Actinobacillus minor
           NM305]
          Length = 443

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 103/272 (37%), Gaps = 21/272 (7%)

Query: 178 NSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGS 222
             +   + N++++        +Q+ ++  I  +  + L ++G +  +           G+
Sbjct: 162 KDNPSSIKNMISLIKELDKPTEQIAIEARIVTISSENLHELGVRWGMLSPNASHSRLGGT 221

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVK--GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             G       +    F   GG  +V     ++    +  L ALE+  ++  +A P L   
Sbjct: 222 LEGNGVDSTKNLNVNFPVSGGASAVLQVASINSKVLDLELSALEQENSVEIIASPRLLTT 281

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-- 338
           + + AS   G +  Y      +    V   +  + L  TP +    +I + +    +   
Sbjct: 282 NKKLASIKQGTEIPYAIYDRKSETYDVEFKEAVLGLQVTPHISKDNQILMDLVVTQNSQG 341

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
              V   +     S   ++ +T V    G TIVL G+ +    +  + +P+L  IP L  
Sbjct: 342 QSVVSSTSDNAAVSIDKQELNTQVFAKHGETIVLGGIFQHLKTKDSDRVPVLGSIPFLKH 401

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           LF   +    + E+ I  TP++++   +    
Sbjct: 402 LFSYQKDQISKRELVIFVTPYIIQANDINAQP 433


>gi|148360420|ref|YP_001251627.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|296106514|ref|YP_003618214.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282193|gb|ABQ56281.1| type IV pilus biogenesis protein PilQ [Legionella pneumophila str.
           Corby]
 gi|295648415|gb|ADG24262.1| type IV pilus assembly protein PilQ [Legionella pneumophila 2300/99
           Alcoy]
          Length = 698

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 111/290 (38%), Gaps = 28/290 (9%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D  +    + T               ++++  L+I  + QV ++  I EV +D  + IG
Sbjct: 394 SDRGKISVDARTNTIWIQDTGTKIEEVRELIKQLDIPVK-QVLIEARIVEVTKDFSQDIG 452

Query: 215 FQHSITGSSSGPSKSFAAD-------------------------FGGKFVSEGGDFSVKG 249
            +  ++  +        A+                                     ++  
Sbjct: 453 IRWGVSRPTHLSGTLEGANELARGTAPANVVPLERRLNLDLAAAPLTGATPASVGIALAK 512

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           + D    +  L ALE       ++ P L   + Q A+    G+ +    ++S+GAT+V  
Sbjct: 513 LNDNILLDLELSALESEGRAELISSPRLIT-TNQQAAVIESGEEIPYQEATSSGATAVAF 571

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
               + L  TP +   G+I + +Q     P        +P+   ++  T V + +G TIV
Sbjct: 572 KKAVLSLKVTPQITPDGKILMDLQINQDTPSPQ-TFLGVPAIITKEIQTNVLVNNGQTIV 630

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ K D  ++   IP   ++P++G LF N +   +  E+ I  TP ++
Sbjct: 631 LGGIYKQDKNKVINRIPFFGELPVVGILFSNRQITLKNEELLIFITPRII 680


>gi|325206729|gb|ADZ02182.1| type IV pilus secretin PilQ [Neisseria meningitidis M04-240196]
          Length = 761

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|224368244|ref|YP_002602407.1| GspD1 [Desulfobacterium autotrophicum HRM2]
 gi|223690960|gb|ACN14243.1| GspD1 [Desulfobacterium autotrophicum HRM2]
          Length = 653

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 71/355 (20%), Positives = 130/355 (36%), Gaps = 39/355 (10%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G + + +  L       L   L+         V+  + +         I D  + +   
Sbjct: 279 RGDEKIRVYYLEHATAEDLAKVLQEMP------VKKSAQSTEGKKTAPVISDMVKIMADK 332

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            T        +      ++V++ L+I     V ++  I EV  +   ++G Q  I     
Sbjct: 333 ATNSLIIMAEKEDYPVLEEVIHKLDIP-RAMVYIECLIMEVNVESGFELGTQWQIGDGYD 391

Query: 225 GPS---------KSFAADFGGKFVSEGGDFSVKGVLDR-------------FSFETVLHA 262
             S          SF    GG F S        G                  +   V+ A
Sbjct: 392 TDSDGNDQGVYFGSFKGSDGGSFTSAAAGGLGSGFSAGIMGKSITIGGVSFPTLGAVIQA 451

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGATSVTTHDYGV 314
            +       L+ P +     + A+ T G    Y+T SS        ++   S    D G+
Sbjct: 452 YQSDKDSHILSTPQILTTDNEEATLTIGKNVPYQTRSSVDNDTTLTTSSYNSYEYKDVGI 511

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            L  TP +     + L +  E+++     + + D P+   RK +TT+ +  G T+V+ GL
Sbjct: 512 TLKITPQISKDRLVRLNVYQEITKLDSSASQSTDRPTTLKRKIETTLIVEDGNTVVIGGL 571

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
           + + +   +  +P L  IP L  LF+ +    E+T +++  TP +VK P+   +L
Sbjct: 572 IDETLSSSEYKVPCLGDIPGLSYLFKTTSTGDEKTNLYVFLTPRVVKNPLEASEL 626


>gi|56461126|ref|YP_156407.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
 gi|56180136|gb|AAV82858.1| Type II secretory pathway, component PulD [Idiomarina loihiensis
           L2TR]
          Length = 708

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 57/284 (20%), Positives = 103/284 (36%), Gaps = 48/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +KV+  L+I    QV ++  I E+        G Q            +      G   + 
Sbjct: 342 EKVIRDLDIR-RAQVQVEAIIVEIMEGDNVDFGVQWISEDGGMVQYNNGNQVPIGSLAAG 400

Query: 242 ----------------------------------------GGDFSVKGVLDRFSFETVLH 261
                                                   G    +     +  +  V+ 
Sbjct: 401 AYQAREREGTTTTRITDGGVEVTTTEPDEPGDVSLLANLLGSVNGMMFGTIQNDWAAVVQ 460

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVL 316
           A+ + T    LA P++  +  + ASF  G +    + S++         +V   + G+ L
Sbjct: 461 AVTQDTRSNILATPSIVTVDNEEASFLVGQEVPTISGSTTGDNNDNPFQTVDRTEIGIKL 520

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP +     + + I+ EVS          +     R+  TTV    G TIVL GL+ +
Sbjct: 521 KVTPQINEGDAVQMTIEQEVSSLSGATAVDVI--INKRELKTTVMADDGETIVLGGLIDE 578

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D+Q+    +PLL  IPILG LF ++  ++++  + +   P +V+
Sbjct: 579 DVQESVSKVPLLGDIPILGKLFSSTSTSKQKRNLMVFIRPTIVR 622


>gi|212217864|ref|YP_002304651.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
 gi|212012126|gb|ACJ19506.1| type 4 pili secretin (outer membrane porin) [Coxiella burnetii
           CbuK_Q154]
          Length = 353

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + +++ L+I    QV +K  I  +    L  +G       +++  +     D     +  
Sbjct: 94  QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 152

Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G  D  +    +    +  L ALE+    + L+ P L   + Q+A     G+ +     +
Sbjct: 153 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 211

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TSVT +   + L  TP VL   RI L++     +    +    +P+ + ++  T V
Sbjct: 212 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 270

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  T+VL G+ +   QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ 
Sbjct: 271 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 330

Query: 421 PVAMRD 426
           P   + 
Sbjct: 331 PYEKKS 336


>gi|167625988|ref|YP_001676282.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
 gi|167356010|gb|ABZ78623.1| type IV pilus secretin PilQ [Shewanella halifaxensis HAW-EB4]
          Length = 688

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 120/307 (39%), Gaps = 28/307 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195
            +      +L G   ++  ++    ++    + +   +    + + V  L+ +      Q
Sbjct: 381 AKAKDIAALLKGEDSSLLTAR--GSVAVDERTNTLLVKDTEETLENVHRLIEVLDIPIKQ 438

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241
           V ++  +  V+ D+ + +G +  +T        S + +  G   +               
Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498

Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F V  + D    +  L ALE+      +A P +T  S Q A++   G  +
Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEI 557

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352
               +SS+GAT+VT     + L  TP +    R+ L ++         V+   G   S  
Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++  T V +  G TIVL G+ +  +      +P+L  IP LG +FRNS    E  E+ I
Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLITKVSKVPILGDIPYLGFMFRNSSDKNERQELLI 677

Query: 413 AATPFLV 419
             TP +V
Sbjct: 678 FVTPKIV 684


>gi|312882862|ref|ZP_07742594.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369381|gb|EFP96901.1| general secretion pathway protein D [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 674

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/319 (17%), Positives = 116/319 (36%), Gaps = 48/319 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
            G  +T    +  V ++    + +           + + V+  L+I    QV ++  I E
Sbjct: 296 SGTKKTQGSKRGDVVIAAHVETNALVLTAPPDIMIALQDVIAQLDIR-RAQVLIEALIVE 354

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S +    + +    G+                           
Sbjct: 355 MAEGDGINLGVQWGSLESGASIQFANSGTPIGQVMVGVEEAKEQTSTEYYTDKDGNRQPY 414

Query: 238 -----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                        + G        +    +  ++ A+   +    L+ P++T +    AS
Sbjct: 415 NVTKPGDYSTLASALGSVNGAALSVVMGDWMALISAVSTDSNSNILSSPSITVMDNGEAS 474

Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           F  G +    T      ++     +V   + G+ L   P +     + L+I+ EVS  + 
Sbjct: 475 FIVGEEVPVITGSAAGSNNENPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVLG 534

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A D+  +  R+ +T+V +  G  IVL GL+ +   + +  +PLL  IP LG LF+++
Sbjct: 535 ANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALESESKVPLLGDIPYLGHLFKST 593

Query: 402 RFNREETEIFIAATPFLVK 420
           R   E+  + +   P +++
Sbjct: 594 RTQVEKKNLMVFIKPTIIR 612


>gi|262166650|ref|ZP_06034387.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
 gi|262026366|gb|EEY45034.1| type IV pilus biogenesis protein PilQ [Vibrio mimicus VM223]
          Length = 545

 Score =  178 bits (450), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 115/309 (37%), Gaps = 28/309 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G V  + +         T            +  ++++  L+I  + QV
Sbjct: 237 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 295

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
            ++  I  V+   L ++G +  +  ++   S                             
Sbjct: 296 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 355

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+  +    ++ P L   + Q A    G +
Sbjct: 356 LAAASTNASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 415

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
             Y    SS+GAT+V+     + L  TP +    R+ L +          +    G+  S
Sbjct: 416 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 474

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+
Sbjct: 475 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 534

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 535 LIFVTPKVV 543


>gi|332701375|ref|ZP_08421463.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332551524|gb|EGJ48568.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 746

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 64/316 (20%), Positives = 116/316 (36%), Gaps = 22/316 (6%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           +   + +       R    + T  L G V  + D      L+                  
Sbjct: 421 IGQQIAQQREAPQARQRDTNITGELTGEVVFVVDVTTNSILTRANSDDYRTVLS------ 474

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V+  L+I    QV ++V IAEV      Q+G         +G +    +          
Sbjct: 475 -VIEKLDI-YPKQVLIEVIIAEVSLTDETQLGIDWRYLLDMTGNASIDFSLSNNPSTFTS 532

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------- 294
           G  +   ++D       L AL  +   + L+ P + + +   A    G +          
Sbjct: 533 GLAAT--LVDGDRLRATLRALASSNRTQILSSPHILSSNHSEAKIDVGQEVPILTQTTET 590

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350
                  + S+   ++   + G++L  TP +   G + + I  E+S      V A + P 
Sbjct: 591 VDTTDPDNVSSVQQNIQYRNTGILLSVTPHINERGLVRMEISQEISSIEETSVGAINSPL 650

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +R R A TTV +    TIV+ GL++ +    +  +P + +IP+L  LF     + +  E+
Sbjct: 651 FRKRLATTTVVVNDEQTIVIGGLMEQENTDNENNVPFVRRIPLLKYLFGYELKSFDNREL 710

Query: 411 FIAATPFLVKPVAMRD 426
            I  TP +V+     D
Sbjct: 711 LIFITPHVVESREDND 726


>gi|229507318|ref|ZP_04396823.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229509758|ref|ZP_04399239.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229513553|ref|ZP_04403017.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229516883|ref|ZP_04406329.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229521696|ref|ZP_04411114.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229606824|ref|YP_002877472.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262158485|ref|ZP_06029600.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
 gi|262170121|ref|ZP_06037810.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|229341290|gb|EEO06294.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TM 11079-80]
 gi|229345946|gb|EEO10918.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC9]
 gi|229349430|gb|EEO14386.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae TMA 21]
 gi|229353232|gb|EEO18171.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae B33]
 gi|229354823|gb|EEO19744.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae BX 330286]
 gi|229369479|gb|ACQ59902.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae MJ-1236]
 gi|262021529|gb|EEY40241.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae RC27]
 gi|262029646|gb|EEY48295.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae INDRE 91/1]
          Length = 571

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|229577502|ref|YP_001178510.2| outer membrane porin HofQ [Enterobacter sp. 638]
          Length = 413

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L+  I  +    L+++G + ++  +    +       G           V    G +
Sbjct: 181 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 240

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 241 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 300

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 301 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 360

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+ 
Sbjct: 361 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 411


>gi|120553763|ref|YP_958114.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
 gi|120323612|gb|ABM17927.1| type IV pilus secretin PilQ [Marinobacter aquaeolei VT8]
          Length = 704

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 129/332 (38%), Gaps = 40/332 (12%)

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--- 181
            T ++    + +R++++         V  +  +   +  S  F+S   R    +      
Sbjct: 372 ETNKQIAELAPVRLDIIQVNYAKAADVVALIQADEELISSRGFVSSDARTNTISVRETAE 431

Query: 182 -----KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---------------- 220
                +++++  ++    QV+++  I   + ++ + +G +                    
Sbjct: 432 KLEEIRRLVSTWDVPVR-QVSIEARIVRAQTNVAEDLGVRWGGAAYNVDGDDVITVGGSL 490

Query: 221 ------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                       GS++           G        F++    D F  +  L ALE    
Sbjct: 491 GTLQEARDAASGGSNTISFPGALGVDLGVSGDGASSFAIGWGSDDFLVDLELSALESDGR 550

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              +++P +     Q+AS  SG +  Y+  +SS GAT++   +  + L  TP +    +I
Sbjct: 551 AEVVSQPRVVTADRQTASIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKI 609

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + +   V++   G     +PS    +  T V + +G T+VL G+ + ++       P L
Sbjct: 610 IMDLV--VNQDSRGEVTAGIPSINTNEVTTQVLVANGETVVLGGIFQSEVATQTTKTPFL 667

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+ +    E +E+ I  TP ++K
Sbjct: 668 GDIPYLGRLFKRTEHIDERSELLIFITPKIIK 699


>gi|145320312|gb|ABP62459.1| type IV pilus secretin PilQ [Enterobacter sp. 638]
          Length = 373

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 59/231 (25%), Positives = 104/231 (45%), Gaps = 5/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L+  I  +    L+++G + ++  +    +       G           V    G +
Sbjct: 141 QVQLEAHIVTINEKSLRELGVKWNLAEAQGAGAPGQVTTMGADLSVANATTHVGFNIGRI 200

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D    +  L ALE+   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 201 DGRLLDLELSALEQKQQLEIIASPRLLASHMQPASIKQGSEIPYQVSSGDSGATSVEFKE 260

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TP VL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 261 AVLGMEVTPVVLPNGRVRLKLRISENMPGQVLQQADGETLAIDKQEIETQVEVKSGETLA 320

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L G+     +   + +P L  +P+LG  FR+   + E  E+ +  TP L+ 
Sbjct: 321 LGGIFSQKNKTASDSVPGLGHVPLLGQFFRHDGKDNERRELVVFITPRLID 371


>gi|255320952|ref|ZP_05362125.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262379956|ref|ZP_06073111.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|255301916|gb|EET81160.1| general secretion pathway protein D [Acinetobacter radioresistens
           SK82]
 gi|262298150|gb|EEY86064.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 751

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 60/268 (22%), Positives = 99/268 (36%), Gaps = 31/268 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG       + G    S 
Sbjct: 377 ESAIQQLDIR-RQQVLIEAAIIEVAGDDADQLGVQWALGDISSGIGLVNFTNVGSSLASL 435

Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277
              +   G                           R  +  ++ AL+  T    L+ P++
Sbjct: 436 AAGYLAGGSALANAASNLRGSSLLLGDYREGADGSRRLYGALIQALKDNTKSNLLSTPSI 495

Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
             +  + A    G    + T S +         T+V   D GV L   P +   G + L 
Sbjct: 496 VTMDNEEAYIVVGQNVPFVTGSVTTNANGVNPYTTVERKDVGVTLKVIPHIGENGTVRLE 555

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++ EVS                R   T V    G T+VL GL+ D+    ++ +P L  I
Sbjct: 556 VEQEVSNVQPNKGQATDLVTSKRAIKTAVLAEHGQTVVLGGLISDNSIYSRQAVPGLGAI 615

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P +G LFR+   + E+  + +   P +V
Sbjct: 616 PGIGRLFRSDSNSNEKRNLLVFIHPTIV 643


>gi|325131459|gb|EGC54166.1| type IV pilus secretin PilQ [Neisseria meningitidis M6190]
 gi|325137566|gb|EGC60147.1| type IV pilus secretin PilQ [Neisseria meningitidis ES14902]
 gi|325197687|gb|ADY93143.1| type IV pilus secretin PilQ [Neisseria meningitidis G2136]
 gi|325201543|gb|ADY96997.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240149]
 gi|325207524|gb|ADZ02976.1| type IV pilus secretin PilQ [Neisseria meningitidis NZ-05/33]
          Length = 769

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 743 GKKTDRRELLIFITPRI 759


>gi|254804373|ref|YP_003082594.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|304388332|ref|ZP_07370446.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|254667915|emb|CBA04080.1| fimbrial assembly protein; pilus secretin [Neisseria meningitidis
           alpha14]
 gi|254670030|emb|CBA04815.1| fimbrial assembly protein [Neisseria meningitidis alpha153]
 gi|261393150|emb|CAX50762.1| type IV pilus secretin PilQ [Neisseria meningitidis 8013]
 gi|304337694|gb|EFM03849.1| type IV pilus secretin PilQ [Neisseria meningitidis ATCC 13091]
 gi|325133588|gb|EGC56249.1| type IV pilus secretin PilQ [Neisseria meningitidis M13399]
 gi|325141680|gb|EGC64140.1| type IV pilus secretin PilQ [Neisseria meningitidis 961-5945]
          Length = 761

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|227327883|ref|ZP_03831907.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 684

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 69/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
            ANV+        ++  +    + +  +   L R+     N +V        +D V VL 
Sbjct: 253 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 312

Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           G+  +IQ  Q+    +           +T               ++V+  L+I    QV 
Sbjct: 313 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 371

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
           ++  IAEV+      +G Q +   +      +                           +
Sbjct: 372 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 431

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
            GG   +     + ++  +L AL + +    LA P++  +    A+F  G +       +
Sbjct: 432 LGGFNGIAAGFYQGNWSMLLTALSKNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 491

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
           T S      +V     G+ L   P +     + L I+ EVS      +        ++  
Sbjct: 492 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTDLGATFNT 551

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + + 
Sbjct: 552 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSTETKKRNLMLF 611

Query: 414 ATPFLVK 420
             P +++
Sbjct: 612 IRPSIIR 618


>gi|325135596|gb|EGC58213.1| type IV pilus secretin PilQ [Neisseria meningitidis M0579]
          Length = 761

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWEAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|123443548|ref|YP_001007521.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090509|emb|CAL13378.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 648

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/263 (19%), Positives = 100/263 (38%), Gaps = 12/263 (4%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
             +        +V+  L++    QV ++  I E +      +G Q +             
Sbjct: 330 TADPKVMKELDQVIERLDVR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGANFLQKP 388

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S   +             +     + +++ +  AL   +    LA P++  +    A F
Sbjct: 389 NSIQTNNNSGNPIPMMIAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448

Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             G +    T + +T       S++    GV+L   P +     + L I+ EVS      
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508

Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +         +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR 
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           S+   E++ + +   P +++  +
Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591


>gi|299065464|emb|CBJ36633.1| fimbrial type-4 assembly protein [Ralstonia solanacearum CMR15]
          Length = 714

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 52/249 (20%), Positives = 95/249 (38%), Gaps = 26/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E      + +G +      S+G                            
Sbjct: 462 RQVMIEARIVEADDTFSRNLGAKLGFAAKSNGSGVGNTYSNVVSPVTQNGTWDNSAAVSL 521

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A+      +     S+            L ALE     + ++ P +       A    G
Sbjct: 522 PANGINGVNAASVAVSLFNAGAGRFLALELSALEADGRGKIISSPRVVTADNIKALIEQG 581

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+  +SS GATSV+     + L  TP +   G + L    +V++  +G    +  +
Sbjct: 582 TEVPYQQATSS-GATSVSFKKANLKLEVTPKITPDGNVFLD--VDVNKDSLGTQTTNGFA 638

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+   + +     IPLL  IP+LG LF+++    + TE+
Sbjct: 639 INTKHVQTQVLVENGGTVVIGGIYTQNERTDVNKIPLLGDIPVLGNLFKSTAKTNDRTEL 698

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 699 LVFLTPRVL 707


>gi|262280702|ref|ZP_06058485.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262257602|gb|EEY76337.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 758

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 106/269 (39%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           +  +  L+I    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDIR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 241 -----------------------EGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPT 276
                                   G  F+V    +   ++  ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATFAVGNFENSRKAYGALIQALKANTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD++  ++GIP LS 
Sbjct: 561 EVEQEVSNVQTSKGQAADLITNKRAIKTAVLAEHGQTVVLGGLVSDDVELSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP LG LFR+   +  +  + +   P +V
Sbjct: 621 IPYLGRLFRSDSRSNTKRNLLVFIHPTIV 649


>gi|70733953|ref|YP_257593.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
 gi|68348252|gb|AAY95858.1| type IV pilus biogenesis protein PilQ [Pseudomonas fluorescens
           Pf-5]
          Length = 583

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 104/257 (40%), Gaps = 23/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
           +++  L++    QV ++  I E   D  K +G +   +  + G   +          S  
Sbjct: 319 RIVAQLDVPVR-QVMIEARIVEANVDYDKSLGVRWGGSVQNQGNWSASGVQNAASGSSSI 377

Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                    +  + D    +  L A+E+      +++P +    
Sbjct: 378 GAPGSGGSNSPFVDLGASAHTSGIGIAYITDNVLLDLELTAMEKTGNGEIVSQPKVVTSD 437

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            ++A    G +  Y+   SS+GATSV+  +  + L  TP +    RI + ++    EP  
Sbjct: 438 KETAKILKGTEIPYQEA-SSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDY 496

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                D+P  +  + +  V +  G TIV+ G+  +   ++ + +P L  +P LG LFR  
Sbjct: 497 LNKVQDVPPIKKNEVNAKVLVNDGATIVIGGVFSNTQSKVVDKVPFLGDVPYLGRLFRRD 556

Query: 402 RFNREETEIFIAATPFL 418
             + +++E+ +  TP +
Sbjct: 557 VVSEKKSELLVFLTPRI 573


>gi|332308478|ref|YP_004436329.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332175807|gb|AEE25061.1| pilus (MSHA type) biogenesis protein MshL [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 552

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 61/251 (24%), Positives = 100/251 (39%), Gaps = 23/251 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L+  I EV      Q G   S   ++SG +    S  +   G  +S          
Sbjct: 281 RQVILEARILEVSLSDGYQQGINWSEILANSGSTDFQFSTTSGSLGDAISATLGGVTSLS 340

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
                F  VL+ L+    ++ L+ P +TAI+ Q A    G    + T  SS         
Sbjct: 341 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSESTVTAATA 400

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
                  +T    G+ L  TP + + G + L +   V E         +          +
Sbjct: 401 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 460

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL++  I + +   PLL  IP+LG LF+N + +  + E+
Sbjct: 461 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQESEIKKEL 520

Query: 411 FIAATPFLVKP 421
            I   P +V  
Sbjct: 521 VILLRPTVVSA 531


>gi|327395552|dbj|BAK12974.1| protein transport protein HofQ precursor HofQ [Pantoea ananatis
           AJ13355]
          Length = 430

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 56/258 (21%), Positives = 108/258 (41%), Gaps = 7/258 (2%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-- 230
            +  A   + + +  L++   +QV L   I  +  + L ++G    +       +++   
Sbjct: 164 DSPAALEETARWIGALDVPL-EQVELAAHIVTISEEHLHELGVNWRLYNEGDVINRALRH 222

Query: 231 --AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G    +         +     +  L ALE+   +  +A P L     Q+AS  
Sbjct: 223 PLLDISLGLNSHDVSVGVTLSRIGGKLLDLELSALEQENQVEIIASPRLFTSHQQTASIK 282

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI--QTEVSEPVIGVNAG 346
            G +  Y+  + ++GATS+   +  + +  TP VL  GRI L+I     V    +     
Sbjct: 283 QGTEIPYEVSAGNSGATSIEFKEAVLGMEVTPAVLGNGRIQLKIRISQNVPGRAVQTGDS 342

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            + S   ++ +T V +  G T+ L G+      + +  +PLL  +P++G+LFR     + 
Sbjct: 343 QVLSIDKQEIETQVTVSDGQTLALGGIFHQQRTRGQRQVPLLGNLPVVGSLFRQHAEEQR 402

Query: 407 ETEIFIAATPFLVKPVAM 424
           + E+ I  TP LV+  + 
Sbjct: 403 KRELVIFMTPRLVQGSSA 420


>gi|262189810|ref|ZP_06048151.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
 gi|262034306|gb|EEY52705.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae CT 5369-93]
          Length = 571

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S                                    +  
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 391

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|332160534|ref|YP_004297111.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664764|gb|ADZ41408.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 648

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 12/263 (4%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
             +        +V+  L+I    QV ++  I E +      +G Q +            +
Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S   +             +     + +++ +  AL   +    LA P++  +    A F
Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448

Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             G +    T + +T       S++    GV+L   P +     + L I+ EVS      
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508

Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +         +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR 
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568

Query: 401 SRFNREETEIFIAATPFLVKPVA 423
           S+   E++ + +   P +++  +
Sbjct: 569 SKEKIEKSNLILFIRPTILRETS 591


>gi|325143815|gb|EGC66131.1| type IV pilus secretin PilQ [Neisseria meningitidis M01-240013]
          Length = 801

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 536 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 594

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 595 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 654

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 655 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 714

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 715 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 774

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 775 GKKTDRRELLIFITPRI 791


>gi|319409865|emb|CBY90178.1| type IV pilus secretin PilQ [Neisseria meningitidis WUE 2594]
          Length = 761

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|308389910|gb|ADO32230.1| pilQ protein [Neisseria meningitidis alpha710]
          Length = 761

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|153206247|ref|ZP_01945510.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165919273|ref|ZP_02219359.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
 gi|120577377|gb|EAX34001.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii 'MSU Goat Q177']
 gi|165916996|gb|EDR35600.1| bacterial type II and III secretion system family protein [Coxiella
           burnetii RSA 334]
          Length = 349

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 61/246 (24%), Positives = 110/246 (44%), Gaps = 4/246 (1%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + +++ L+I    QV +K  I  +    L  +G       +++  +     D     +  
Sbjct: 90  QSLVSQLDIPI-HQVLIKARIISISDHNLHSLGILFGTKTNNAQSNDGLIEDKPNSTIQF 148

Query: 242 G-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G  D  +    +    +  L ALE+    + L+ P L   + Q+A     G+ +     +
Sbjct: 149 GVADIPIIKFKNGQLLDLTLSALEQEGRAQVLSCPELMTNNRQTA-IIESGEAIPYQEKT 207

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
             G TSVT +   + L  TP VL   RI L++     +    +    +P+ + ++  T V
Sbjct: 208 GQGNTSVTFNKATLRLKVTPVVLPGNRILLQLNVNQDKMSSFL-VNGVPTIQTQQLTTKV 266

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  T+VL G+ +   QQ + GIP L KIPILG LFR+ + + E  ++ I  TP ++ 
Sbjct: 267 MVNNQETVVLGGIYEQSTQQEEAGIPGLHKIPILGGLFRHRQRSSERKQLLIFVTPQIIS 326

Query: 421 PVAMRD 426
           P   + 
Sbjct: 327 PYEKKS 332


>gi|187925571|ref|YP_001897213.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
 gi|187716765|gb|ACD17989.1| type IV pilus secretin PilQ [Burkholderia phytofirmans PsJN]
          Length = 591

 Score =  177 bits (449), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/454 (17%), Positives = 154/454 (33%), Gaps = 49/454 (10%)

Query: 4   LQRTFFTMMSIFLFSSN----PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
           L+R F          +     P V   P  + +NA       V     K IS+   +  +
Sbjct: 148 LRRQFAASARADATGTAALEGPPVPLPPLARLSNAPRSAADAVLAPDDKPISLNFQRAEL 207

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117
             V              A   V    ++ L  K   +     L+  +G  M  + +++  
Sbjct: 208 GAVLSAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 265

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172
             IA L    R+         E  +    L  +     +     ++    L     +Q  
Sbjct: 266 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 318

Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214
            ++   +++    NLL +                      QV ++  I E      + +G
Sbjct: 319 LSKRGAATADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQVLIEARIVEGEHGFSRNLG 378

Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            + S+  +++  +     D G          F       ++            L ALE  
Sbjct: 379 VKLSMAATNADGTAKGLTDAGYDLSARPISGFDVATAGLTLFAAGATRLLNIELSALEAQ 438

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                ++ P +       A    G +  Y+      G + V      + L   P ++  G
Sbjct: 439 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 497

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R+ L +  +V++  +G      P+   +   T VE+  GGT+ + G+   D +     +P
Sbjct: 498 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTRVP 555

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 556 VLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 589


>gi|54310534|ref|YP_131554.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
 gi|46914977|emb|CAG21752.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum SS9]
          Length = 670

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/384 (17%), Positives = 137/384 (35%), Gaps = 64/384 (16%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN----IRVEMVS--DTV-VLHGMV 151
           V+        +L+ D  + + +  L   L + +A S     I ++  +  D V VL G+ 
Sbjct: 227 VVADERTNAVLLSGDPQVRKRLRKLIHQLDKEMATSGNNRVIYLKYANAEDMVDVLKGVS 286

Query: 152 RTIQDSQR---------------AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
             +Q  ++                     T             + + ++  L+I    QV
Sbjct: 287 DNLQSEKQGASKTPVGSNKSTVMISAHVGTNALIVTAPPDIMRALESIIAQLDIR-RAQV 345

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I E+        G Q+           +                           
Sbjct: 346 LIEAMIVELSEGDGINFGVQYGSADGGVIQFGNSNVPISQYAIGLQEAQDVPGSTVINSD 405

Query: 232 ----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                      DF       GG       +    +  +++A+   +    L+ P++T + 
Sbjct: 406 GTTTINEATQGDFSTLASVLGGVNGAALGIVMGDWTMLVNAVATDSNSNILSSPSITVLD 465

Query: 282 GQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
              ASF  G +    T      S+     +V   + G+ L+ TP +     + L+I+ EV
Sbjct: 466 NSEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKEVGIKLNVTPQINEGDSVQLKIEQEV 525

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S  +    A D+  +  R+ +TTV +  G  I L GL+ ++ ++ +  IP+L  IP LG 
Sbjct: 526 SSVLGASGAVDV-RFAKRQINTTVLVKDGQMIALGGLISEETKESESKIPILGDIPFLGF 584

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF+++     +T + +   P +++
Sbjct: 585 LFKSTNTTTAKTNLMVFIKPTIIR 608


>gi|297581470|ref|ZP_06943393.1| fimbrial assembly protein [Vibrio cholerae RC385]
 gi|297534308|gb|EFH73146.1| fimbrial assembly protein [Vibrio cholerae RC385]
          Length = 578

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 141/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 170 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 225

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 226 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 279

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 280 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 338

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S                                    +  
Sbjct: 339 EGNLEELGVRWGVMSTNGSHSVGGTIESNLWQQGLLADDEFPVDEFLNVNLASTSANASS 398

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 399 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 457

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 458 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 517

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 518 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 576


>gi|313895052|ref|ZP_07828609.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975947|gb|EFR41405.1| type IV pilus secretin PilQ [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 426

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 81/430 (18%), Positives = 164/430 (38%), Gaps = 19/430 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R     ++         +   P   +     +    + + +   + + ++  +   V 
Sbjct: 1   MKRFVIMGLACLALLVPARLYAAPVTIDVTGGDVRTVLLAVARMGNVPLIVDDGVTGAVT 60

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             +      +P +   ++ + R +++  +      +        + +++  +   D A L
Sbjct: 61  AHLT----GEPEELLHLIAAARGIHIERRGDVFLALGAEARTENRRVHIYPVRFADPAEL 116

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                  +     R  M          V      +R +  + T        +    + ++
Sbjct: 117 AYAANLSLGGEGKRGNMSKTNDESGNEVSASDTGRRVLVDTATNTLLFYGTEAEAFAVRE 176

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           +++ L++    QV+L+  +  V +   KQ+G   + +     PS        G+    G 
Sbjct: 177 IISALDVK-PRQVSLEARVVSVSKAAAKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGR 235

Query: 244 -----------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                           GV   F +   + AL      + LA P +T + G+ A    G +
Sbjct: 236 TGTSAPGIIRFGRGPAGVPYEFYYSAAISALITDGKAKMLARPNVTTVQGREALINIGAE 295

Query: 293 HLYKTVSSST--GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
                 + S     +++   + G++L +TP V + G I  R+ TEVS PV  V       
Sbjct: 296 VPVPRTTMSDHVTTSAIDYREAGIILRYTPRVTADGTITARVHTEVSTPVY-VEELKAYR 354

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           ++ R ADTTV L  G T+V+ GL+  D  +    IP L  +P+LGA FR+ R N+ E+E+
Sbjct: 355 FQKRSADTTVRLRDGETMVIGGLIDSDESRSLSKIPFLGDLPVLGAFFRSVRTNKTESEL 414

Query: 411 FIAATPFLVK 420
            I  T  ++ 
Sbjct: 415 MIFLTARVLD 424


>gi|94312199|ref|YP_585409.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356051|gb|ABF10140.1| pili assembly protein PilQ [Cupriavidus metallidurans CH34]
          Length = 710

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 98/245 (40%), Gaps = 22/245 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVS----- 240
            QV ++  I E      + +G +             S+ G S   A + G   +S     
Sbjct: 462 RQVIIEARIVEASDTFSRNLGVKLGFALPKSGSSLSSNYGNSLPNATNDGTPALSLPAAA 521

Query: 241 ------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     FS+         +  L ALE     + ++ P +   +   A    G +  
Sbjct: 522 INSVNPATAAFSIFNAAAGRFLDLELSALEADGKGKIISSPRVVTANNIKALIEQGTELP 581

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y++ +SS GATSV      + L  TP +   G + L    +V++  +G+   +  +   +
Sbjct: 582 YQSATSS-GATSVQFRKANLKLEVTPQITPEGNVLLD--VDVNKDSVGIRTDNGFAIDTK 638

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V + +GGT+V+ G+   +       +P L  +P+LG  F+N+      TE+ +  
Sbjct: 639 HVQTQVLVENGGTVVIGGIYSQEESNTVNKVPWLGDLPVLGNFFKNNAKVNNRTELLVFL 698

Query: 415 TPFLV 419
           TP ++
Sbjct: 699 TPRVL 703


>gi|316984411|gb|EFV63384.1| type IV pilus secretin PilQ family protein [Neisseria meningitidis
           H44/76]
 gi|325200874|gb|ADY96329.1| type IV pilus secretin PilQ [Neisseria meningitidis H44/76]
          Length = 777

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
           K+++ L++    QV ++  I E      + +G +   TG       +S       + FGG
Sbjct: 512 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 570

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 571 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 630

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 631 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 690

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 691 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 750

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 751 GKKTDRRELLIFITPRI 767


>gi|15678016|ref|NP_274809.1| pilQ protein [Neisseria meningitidis MC58]
 gi|62287061|sp|Q70M91|PILQ_NEIMB RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|66731938|gb|AAY52170.1| pilQ protein [Neisseria meningitidis MC58]
 gi|325139633|gb|EGC62172.1| type IV pilus secretin PilQ [Neisseria meningitidis CU385]
          Length = 769

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
           K+++ L++    QV ++  I E      + +G +   TG       +S       + FGG
Sbjct: 504 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 562

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 563 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 622

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 623 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 682

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 683 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 742

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 743 GKKTDRRELLIFITPRI 759


>gi|308272100|emb|CBX28708.1| hypothetical protein N47_G40320 [uncultured Desulfobacterium sp.]
          Length = 818

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/236 (22%), Positives = 96/236 (40%), Gaps = 12/236 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I E      ++IG   S     +  S           V+     + KG + 
Sbjct: 580 TPQVVIEARIVEATTSFSREIGVIWSADAGPNSSSSLGGTYDLNAAVNFPTTAANKGTIG 639

Query: 253 ---------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                     F     L A+E     + ++ P +  +  + A+   G ++ Y     ++G
Sbjct: 640 FDFARINGSPFLLNAKLEAMEAQGEGKIVSAPKICTLDNKEATIKQGLRYPY-NKLDTSG 698

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T+    D  + L   P V    RI + I+ +  +  I +N     S+  ++A+T + + 
Sbjct: 699 NTTTVFEDVDLELKVKPHVTPDNRISMLIKIKKRDLGIFINDQQ--SFTNKEAETELLVN 756

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+V+ G++K         IP LS+IPILG  F++      + E+ I  TP +V
Sbjct: 757 DGDTVVIGGIIKTSKNTGGSLIPGLSRIPILGWFFKSDTKTDNKEELLIFITPKIV 812


>gi|161869408|ref|YP_001598575.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|218767605|ref|YP_002342117.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|62287129|sp|Q9JVW4|PILQ_NEIMA RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|121051613|emb|CAM07913.1| pilus secretin [Neisseria meningitidis Z2491]
 gi|161594961|gb|ABX72621.1| type IV pilus assembly protein PilQ [Neisseria meningitidis 053442]
 gi|325129552|gb|EGC52376.1| type IV pilus secretin PilQ [Neisseria meningitidis OX99.30304]
          Length = 761

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
           K+++ L++    QV ++  I E      + +G +   TG       +S       + FGG
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|71279149|ref|YP_267229.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
 gi|71144889|gb|AAZ25362.1| type IV pilus biogenesis protein PilQ [Colwellia psychrerythraea
           34H]
          Length = 706

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 119/315 (37%), Gaps = 56/315 (17%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            ++ V+  ++T+++    ++I+D +R + +                        L++   
Sbjct: 415 GSVSVDERTNTLLIRDTAKSIEDIKRMITI------------------------LDVPVR 450

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GSSS 224
            QV ++  +  V+ ++ +++G +  +T                             G   
Sbjct: 451 -QVVIEARMVTVKDNMNEELGIRWGVTNTDGEFATSGSIEGASSANGTRGVTTPGVGQVP 509

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   +      +    F V  + +    +  L ALE+      +A P +T  + + 
Sbjct: 510 TIGDGLNVNLPVANAAGTIAFQVARLANGTILDLELSALEKENKGEVIASPRITTANQKE 569

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A    G +  Y+  +SS GAT+       + L  TP +    +I L +           +
Sbjct: 570 AYIEQGVEIPYQEAASS-GATATQFKKAVLSLTVTPHITPDDKIILDLVVTQDTISDITS 628

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P+   ++  T V + +G TIVL G+ +  I      IP+L  IP LG LFRNS   
Sbjct: 629 GF-APAIDTQRIGTQVLVNNGETIVLGGIYQQAIISTVSKIPILGDIPYLGWLFRNSSQL 687

Query: 405 REETEIFIAATPFLV 419
            E+ E+ I  TP +V
Sbjct: 688 NEKKELLIFVTPRIV 702


>gi|89256170|ref|YP_513532.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314642|ref|YP_763365.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156502212|ref|YP_001428277.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
 gi|167010550|ref|ZP_02275481.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica FSC200]
 gi|290954188|ref|ZP_06558809.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|295312388|ref|ZP_06803168.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           URFT1]
 gi|89144001|emb|CAJ79239.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. holarctica LVS]
 gi|115129541|gb|ABI82728.1| type IV pilus assembly protein [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156252815|gb|ABU61321.1| type IV pilus secretin [Francisella tularensis subsp. holarctica
           FTNF002-00]
          Length = 590

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/417 (17%), Positives = 148/417 (35%), Gaps = 36/417 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
                       + + +             L  + +      L       N      + T
Sbjct: 236 G----LATKKMSSILYVATAAEIAAQEQLELQTKRLLENNAILVTEFIPLNYTTAQAAQT 291

Query: 145 VVLH-----GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
           V+       G + + + S  A   + T        +      K+V+N ++I   DQV ++
Sbjct: 292 VITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNDIDIPN-DQVLIE 348

Query: 200 VTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL---- 251
             I EV R    ++GF + +       + G     +        +     +  G      
Sbjct: 349 ARIVEVLRTSALELGFNYGVVDPSSRVNIGLYTFNSNPNPAPGPTPTPVDTFVGTTAKLA 408

Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                    E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +V
Sbjct: 409 YTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAAV 467

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVEL 362
              +  + L  TP +   G I + I    +                P  + R+  T V  
Sbjct: 468 AFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVMT 527

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 528 KDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 584


>gi|238760627|ref|ZP_04621755.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
 gi|238701160|gb|EEP93749.1| General secretion pathway protein D [Yersinia aldovae ATCC 35236]
          Length = 657

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 116/341 (34%), Gaps = 19/341 (5%)

Query: 144 TVVLHGMVRTIQDSQRAVEL---SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            +   G         + V +   ++T               ++V+  L+I    QV ++ 
Sbjct: 307 QLAGKGQATPAVAMMKNVVIKADAQTNSLIINAAPDLLRDLEQVITQLDIR-RAQVLVEA 365

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFS 255
            I EV+      +G Q               A       ++ G        +     R +
Sbjct: 366 IIVEVQDSDALNLGVQWFNRNGGGSNFPDTGASASSITPNDVGSSLKGVAGLATGFYRGN 425

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHD 311
           +  +  AL   +    LA P++  +    A F+ G +    T S +T       +V   +
Sbjct: 426 WSGLFTALRTNSQNDILATPSIVTLDNMEAEFSVGQEVPILTGSQTTTGDNIFRTVDRKN 485

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368
            G+ L   P +     + L I+ EVS       G       ++  R     V + S   +
Sbjct: 486 VGIKLKVKPQINKGDSVLLEIEQEVSSVAEKAPGGTGDLGATFNTRMVKNAVMVGSNNIV 545

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RD 426
           V+ GLL      +   +PLL  IP +G LFR++     +  + +   P +++        
Sbjct: 546 VVGGLLDSTSHDVTSKVPLLGDIPGIGFLFRSTSQKMVKRNLMLFIRPTILREQDSYIDA 605

Query: 427 LSRPDDHYSVEDDAKAFFFN-RVNKIYGPKEASEVEGQNYK 466
            ++  D +  E +        R+N+      +     ++ +
Sbjct: 606 SNQRLDKFQQEQNTDRTTNGQRINQSLNKALSGGNSLRDLQ 646


>gi|193076133|gb|ABO10746.2| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 758

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L   +F+        ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|169797464|ref|YP_001715257.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|184156612|ref|YP_001844951.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213155722|ref|YP_002317767.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|215484901|ref|YP_002327140.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|301347975|ref|ZP_07228716.1| general secretion pathway protein D [Acinetobacter baumannii AB056]
 gi|301510797|ref|ZP_07236034.1| general secretion pathway protein D [Acinetobacter baumannii AB058]
 gi|301596692|ref|ZP_07241700.1| general secretion pathway protein D [Acinetobacter baumannii AB059]
 gi|332874904|ref|ZP_08442755.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
 gi|169150391|emb|CAM88288.1| putative general secretion pathway protein [Acinetobacter baumannii
           AYE]
 gi|183208206|gb|ACC55604.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           ACICU]
 gi|213054882|gb|ACJ39784.1| general secretion pathway protein D [Acinetobacter baumannii
           AB0057]
 gi|213988659|gb|ACJ58958.1| general secretion pathway protein D [Acinetobacter baumannii
           AB307-0294]
 gi|322506499|gb|ADX01953.1| PulD [Acinetobacter baumannii 1656-2]
 gi|323516378|gb|ADX90759.1| Type II secretory pathway, component PulD [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332736847|gb|EGJ67823.1| general secretion pathway protein D [Acinetobacter baumannii
           6014059]
          Length = 758

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L   +F+        ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|157960066|ref|YP_001500100.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
 gi|157845066|gb|ABV85565.1| type IV pilus secretin PilQ [Shewanella pealeana ATCC 700345]
          Length = 688

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 121/307 (39%), Gaps = 28/307 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQ 195
            + V    +L G   ++  S+    ++    + +   +    + + +  L+ +      Q
Sbjct: 381 AKAVDIAALLKGEDSSLLTSR--GSVAVDERTNTLLVKDTEETLENIHRLIEVLDIPIKQ 438

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------- 241
           V ++  +  V+ D+ + +G +  +T        S + +  G   +               
Sbjct: 439 VLIEARMVTVKDDVSEDLGVRWGVTDQQGDKGTSGSLEGAGDIANGIVPSLSDRLNVNLP 498

Query: 242 -------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F V  + D    +  L ALE+      +A P +T  S Q A+F   G  +
Sbjct: 499 AAVANPTSIAFHVAKLADGTVLDLELSALEQENKGEIIASPRITT-SNQKAAFIEQGVEI 557

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYR 352
               +SS+GAT+VT     + L  TP +    R+ L ++         V+   G   S  
Sbjct: 558 PYVEASSSGATTVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGQAVSID 617

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++  T V +  G TIVL G+ +  +      +P+L  IP LG +FR++    E  E+ I
Sbjct: 618 TQRIGTQVLVDHGETIVLGGIYQQQLISRVSKVPILGDIPYLGFMFRSTSDKNERQELLI 677

Query: 413 AATPFLV 419
             TP +V
Sbjct: 678 FVTPKIV 684


>gi|170724709|ref|YP_001758735.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
 gi|169810056|gb|ACA84640.1| type IV pilus secretin PilQ [Shewanella woodyi ATCC 51908]
          Length = 682

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 105/248 (42%), Gaps = 23/248 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGPSKSFAA------------------D 233
            QV ++  +  V+ D+ + +G +  I+    S G S S                     +
Sbjct: 432 RQVLIEARMVTVKDDVSEDLGIKWGISDKQGSKGTSGSIGGAQDIANGIIPSVNDRLNVN 491

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F     +    F V  + D    +  L ALE+      +A P +T  S Q A++   G  
Sbjct: 492 FPAPEAAASIAFHVAKLADGTILDMELSALEQENKGEIIASPRITT-SNQKAAYIEQGVE 550

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
           +    +SS+GA +V+     + L  TP +    R+ L ++        V+    G++ S 
Sbjct: 551 IPYVEASSSGAATVSFKKAVLSLRVTPQITPDNRVILDLEISQDSQGKVVATPLGEVVSI 610

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V +  G TIVL G+ + ++      +P+L  IP +G LFR++    E  E+ 
Sbjct: 611 DTQRIGTQVLVDHGETIVLGGIYQQNLISRVSKVPVLGDIPFVGFLFRSTSDKNERQELL 670

Query: 412 IAATPFLV 419
           I  TP ++
Sbjct: 671 IFVTPKII 678


>gi|153833899|ref|ZP_01986566.1| general secretion pathway protein D [Vibrio harveyi HY01]
 gi|148869737|gb|EDL68714.1| general secretion pathway protein D [Vibrio harveyi HY01]
          Length = 681

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 68/459 (14%), Positives = 155/459 (33%), Gaps = 89/459 (19%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        ++   S   M      + +        
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIEVVELRNASASEMVRIVDALNKTTNQKSTP 220

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA------------ 231
               QV ++  I E+       +G Q         I   ++G S                
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGNLETGAVIQYGNTGASIGGVMIGLEEAKDSER 399

Query: 232 -------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                     D+     +  G       +    +  ++ A+   
Sbjct: 400 TESTYDPQNPNANPDGYVERKFTEEGDYSTLAAALSGVNGAAMSIVMGDWTALISAVSSD 459

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
           +    L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P 
Sbjct: 460 SNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQ 519

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + 
Sbjct: 520 INEGDSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALES 578

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +PLL  IP++G LF+++    E+  + +   P +++
Sbjct: 579 ESKVPLLGDIPVIGQLFKSTSTQTEKRNLMVFIKPTIIR 617


>gi|239502032|ref|ZP_04661342.1| general secretion pathway protein D [Acinetobacter baumannii AB900]
          Length = 758

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L   +F+        ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|119472772|ref|ZP_01614709.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
 gi|119444731|gb|EAW26036.1| General secretion pathway protein D [Alteromonadales bacterium
           TW-7]
          Length = 687

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 72/393 (18%), Positives = 129/393 (32%), Gaps = 63/393 (16%)

Query: 88  YLFGKNV--GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR------FIADSNIRVE 139
           +L  K V  G+ N +++  +G+       LI+R    LE           +    ++   
Sbjct: 231 FLIPKVVADGRTNSVIVSGEGQARTRAIELIKRLDGELESQGNTKVFYLNYAKSEDLVKV 290

Query: 140 MVSDTVVLH----GMVRTIQDSQRAVELSETFLSQS----GRNQYANSSSKKVMNLLNIA 191
           +   +  L     G     +         E     +            S + V+  L+I 
Sbjct: 291 LQGVSKTLTEEAQGSATKTRSRSNNETSIEAHPESNSLIITAQPDTMRSLESVIERLDIR 350

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--------- 242
              QV ++  I EV       +G Q            +      G               
Sbjct: 351 -RAQVLVEAIIIEVMEGDGVNLGLQWISEQGGMLQFNNGTTVPVGSLAVAAEQAQDTTVT 409

Query: 243 ------------------------------GDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                         G   +   + +  +  ++ A+   T    L
Sbjct: 410 QNIIGTESGNVTPYTETTEGDYGPLASLLSGINGLALGVVKNDWGAIIQAVATDTNSNIL 469

Query: 273 AEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           A P++T +  + AS   G +           ++S    +V   + G+ L  TP +     
Sbjct: 470 ATPSITTMDNEEASILVGQEVPIITGSQTGTNNSNPFQTVERQEVGIKLIVTPQINDGSA 529

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS            S   R   TTV    GG +VL GL+ +D+Q+    +PL
Sbjct: 530 VQLTIEQEVSSVSGATAVD--ISVNKRAIKTTVIADDGGMVVLGGLIDEDVQESVSKVPL 587

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IP+LG LFR++   R +  + +   P +++
Sbjct: 588 LGDIPVLGHLFRSTNTTRRKRNLIVFIRPTIIR 620


>gi|221134989|ref|ZP_03561292.1| general secretion pathway protein D [Glaciecola sp. HTCC2999]
          Length = 693

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 74/388 (19%), Positives = 140/388 (36%), Gaps = 69/388 (17%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV-VLHGMV 151
           V+        +++ D+   + + +L   + + +  S       +      D V VL G+ 
Sbjct: 242 VVADDRTNSVIVSGDVKARQRLINLITRMDQELETSGNTRVIFLNYAKADDLVKVLKGVS 301

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-----------------KKVMNLLNIAGED 194
            +IQ  ++    +    + + R+   ++                   ++V+  L++    
Sbjct: 302 ESIQAEEKGTSSNSRSKNANTRDVSIDAHEDSNSLVITAEPDMMRSLEEVIRQLDVR-RA 360

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------- 241
           QV ++  I EV       +G Q            +  A  G   V+              
Sbjct: 361 QVQVEAIIVEVFEGDGTTLGVQLVSEEGGGTQFTNGVAGVGSLGVALRQAEDREVNRSTT 420

Query: 242 ------------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                   GG   +   +    +  V+ A+   T    LA P L
Sbjct: 421 AQDGSAVQAIDTIEGDFTALANILGGANGMIAGIIENGWGAVVQAVSTDTNSNILATPHL 480

Query: 278 TAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           T +  + A F  G +    T +S+         +V   + G+ L  TP +     + L I
Sbjct: 481 TTMDNEEAFFIVGQEVPIITGTSTGSNNSNPFQTVDRQEVGIKLKVTPQINEGDAVQLLI 540

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS      +     S   R+  TTV +  GGTIVL GL+ +D+Q+    +PLL  IP
Sbjct: 541 EQEVSSVSGATSVD--ISINKREIKTTVIVDDGGTIVLGGLIDEDVQESVSKVPLLGDIP 598

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
            +G LF+ +  ++ +  + +   P +V+
Sbjct: 599 FVGHLFKTTTSSKRKRNLMVFLRPTIVR 626


>gi|34305612|gb|AAQ63613.1| GspD [Ralstonia solanacearum]
          Length = 709

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 333 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 392

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 393 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 452

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 453 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 512

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 513 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 572

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y
Sbjct: 573 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 618


>gi|241759496|ref|ZP_04757600.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
 gi|241320278|gb|EER56611.1| fimbrial assembly protein PilQ [Neisseria flavescens SK114]
          Length = 710

 Score =  177 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 106/279 (37%), Gaps = 30/279 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSS 223
             N+      +K+++ L++    QV ++  I E      + +G +            GS+
Sbjct: 428 TDNRGVIEKFRKLIDELDVPTR-QVMVEARIVEAEDTFFRNLGVKFGSGGAIGRTAWGSN 486

Query: 224 SGP-------------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                 + +   +      +     ++       +    + A E
Sbjct: 487 WSNAQTNYKTNASFNRGEVGYRTWTLDPNVSLPTAAAVNSIALVRAFSSGALGLEISASE 546

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                +T++ P +     + A   SG +  Y+   SS+GATS+T     + L  TP +  
Sbjct: 547 EQGKSKTISNPRVLTQDRKEAKIESGTEIPYQEA-SSSGATSITFKKAVLGLTVTPNITP 605

Query: 325 PGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+I + ++     P    V++        +  +T   +  GGT+++ G+ +++      
Sbjct: 606 DGQIIMTVKINRDTPIDCTVDSLMTKCINTKHLNTQAMVEDGGTLIVGGIYEEESTNAVN 665

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +P+L  IP++G LF++        E+ I  TP ++  V
Sbjct: 666 KVPVLGDIPVVGNLFKSRGKRENRRELLIFITPRIMDNV 704


>gi|229527442|ref|ZP_04416834.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|229335074|gb|EEO00559.1| type IV pilus biogenesis protein PilQ [Vibrio cholerae 12129(1)]
 gi|327485110|gb|AEA79517.1| Type IV pilus biogenesis protein PilQ [Vibrio cholerae LMA3894-4]
          Length = 571

 Score =  177 bits (448), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 70/419 (16%), Positives = 142/419 (33%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 219 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPNNIAVIREIIESLDIPVK-QVQIEARIVTVK 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L+++G +  +  ++   S   +                                +  
Sbjct: 332 EGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVNLASTSANASS 391

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y    SS+
Sbjct: 392 IAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLES-SSS 450

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V      + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 451 GASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|312972414|ref|ZP_07786588.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310334791|gb|EFQ00996.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 650

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 60/295 (20%), Positives = 105/295 (35%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 302 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD-------FSVKG 249
               +G Q +     +    +                  G   S             +  
Sbjct: 361 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 420

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 421 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 480

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 481 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 540

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++    +PL   IP++G LFR +   R +  + +   P +++
Sbjct: 541 ETVVLGGLLDDFSKEQVSKVPLPGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 595


>gi|227112152|ref|ZP_03825808.1| putative outer membrane porin HofQ [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 420

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 55/231 (23%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + L+ +G    +   S+        +F      +    +       L
Sbjct: 186 QVQLAAHIVTISSEHLQALGVNWGLGEGSAANKALRLNNFNVGLPVDTPAINAGFHLARL 245

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 246 NGRLLDLELMALEQESQVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 305

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +   + G+  +   ++  T V +  G TI
Sbjct: 306 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 365

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+L ++P+ G LFRN        E+ I  TP L+
Sbjct: 366 VLGGIFQQQKKNSDRQVPILGEVPVFGHLFRNHTQQHTRRELVIFITPTLI 416


>gi|91785421|ref|YP_560627.1| putative fimbrial type-4 assembly signal peptide, PilQ-like
           [Burkholderia xenovorans LB400]
 gi|91689375|gb|ABE32575.1| Putative fimbrial type-4 assembly signal peptide, PilQ-like protein
           [Burkholderia xenovorans LB400]
          Length = 567

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 79/454 (17%), Positives = 155/454 (34%), Gaps = 46/454 (10%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKG-KKISIGLNKVII 59
           +R          +    +       LPP+   + A ++ +D  +    K +S+   +  +
Sbjct: 124 LRRQSAAAARDNAAGSSALEGPPVPLPPLARLSGAPLSAADAGLAPDDKPLSLNFQRAEL 183

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV-ILIGHDGKQM-LNLDILIE 117
             V              A   V    ++ L  K   +     L+  +G  M  + +++  
Sbjct: 184 GAVLNAFAR-FTGLNIVASERVRGAVSLRLD-KVPWRTAFDTLLDVNGLAMERHGNVIWV 241

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSG 172
             IA L    R+         E  +    L  +     +     ++    L     +Q  
Sbjct: 242 APIADLAARERQRF-------EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRV 294

Query: 173 RNQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIG 214
            ++   +++    NLL +                      QV ++  I E      + +G
Sbjct: 295 LSKRGAATADPRTNLLFVTDLEARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLG 354

Query: 215 FQHSITGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            + S+  S++  S     D            F +     ++            L ALE  
Sbjct: 355 VKLSMATSNADGSAKGLTDAAYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQ 414

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                ++ P +       A    G +  Y+      G + V      + L   P ++  G
Sbjct: 415 GRGEIVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDG 473

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           R+ L +  +V++  +G      P+   +   T VE+  GGT+ + G+   D +     +P
Sbjct: 474 RVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVP 531

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL KIP+LGALFR+       +E+ +  TP +V+
Sbjct: 532 LLGKIPVLGALFRHRAHRDRRSELAVFITPRVVQ 565


>gi|269140603|ref|YP_003297304.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|267986264|gb|ACY86093.1| Type II secretory pathway, component HofQ [Edwardsiella tarda
           EIB202]
 gi|304560390|gb|ADM43054.1| Type IV pilus biogenesis protein PilQ [Edwardsiella tarda FL6-60]
          Length = 409

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 74/422 (17%), Positives = 143/422 (33%), Gaps = 26/422 (6%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGL-----NKVIILQVPVDVQDV 69
            L + + +   +P     + A +      + +   +++ L      +  +         V
Sbjct: 1   MLLAMSSAGQAMPLTLWFDRAPLPSVLQAVAEFAGLNLILSEEVRGEATLHIAHTPWPRV 60

Query: 70  LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           L +     D+ V     + L        +               +L    +    + LR 
Sbjct: 61  LDALAEIYDLSVVRRDGILLIQ------SRARAARQAGPAAAPALLKPPQMRSQRVVLR- 113

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                    +  +    L      + ++  AV    T            ++ +  +  L+
Sbjct: 114 -------HADAATVEKSLRQRRDLLGEAGSAVADIRTNALLLRAEAARLAALRDWIAQLD 166

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           +    QV L   I  + ++ L+++G +       SG            F +         
Sbjct: 167 VPLS-QVQLAAHIVSISQEGLRELGIRWYSGDERSGGQDRLRGAADAYFSAG----FQVA 221

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +   +    L ALER   +  +A P L A  GQ+AS   G +  Y       G +++  
Sbjct: 222 RIGGQTLAVALAALERQDKVAIIASPHLMAAHGQTASIKQGSELPYAVSGGERGVSTMEF 281

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TP VL+   I L +Q   + P  V+     +  +   ++  T V L  G T
Sbjct: 282 KEAVLGMSVTPRVLADAHIELALQISQNMPGRVVRQGDSEALAIDKQEITTQVTLSDGDT 341

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            +L G+ +   Q    G P L+ +P+LG L R+        E+ I  TP L+ P +    
Sbjct: 342 AMLGGIFQYQRQVDSIGFPWLADVPLLGHLLRSDSQRSGRRELVIFITPTLLSPASPAPQ 401

Query: 428 SR 429
           S 
Sbjct: 402 SL 403


>gi|254373092|ref|ZP_04988581.1| hypothetical protein FTCG_00669 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151570819|gb|EDN36473.1| hypothetical protein FTCG_00669 [Francisella novicida GA99-3549]
          Length = 593

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 72/418 (17%), Positives = 154/418 (36%), Gaps = 36/418 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 181 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 236

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 237 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 293

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 294 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 350

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--------------EGGDFS 246
            I EV R    ++GF + +   S   +            +                    
Sbjct: 351 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPVDTFVGTTAKL 410

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +  V      +  + ALE  +    +A P L   + Q A F   G+ +    ++++GA +
Sbjct: 411 MYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGAAA 469

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTTVE 361
           V   +  + L  TP +   G I + I    +                P  + R+  T V 
Sbjct: 470 VAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTKVM 529

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 530 TKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 587


>gi|238899270|ref|YP_002924953.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229467031|gb|ACQ68805.1| putative transport protein, possibly in biosynthesis of type IV
           pilin [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 419

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 47/230 (20%), Positives = 92/230 (40%), Gaps = 5/230 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-AADFGGKFVSEGGDFSV-KGVL 251
            Q+ L   I  +  + L ++G +  +     G        +      +     +     +
Sbjct: 190 RQIELSAHIVTMSSENLYELGIRWGMNALEKGNPLGIKNFNINLPLKNTAIAANFQVASI 249

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+   +  +A P L     Q+AS   G    Y+ ++      S+   +
Sbjct: 250 NSRLLDLELSALEQENQVDIIASPRLITSHQQTASIKQGTDIPYQ-INGKKENVSIEFKE 308

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPT+L   +I L+++   + P + +     +  +   ++  T + +  G TIV
Sbjct: 309 AVLGMEVTPTILGNDKIRLKLKISQNMPGMAIKRGNAETLAIDKQEITTQIIVKHGETIV 368

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+ +       + +P    IP LGALFR     +   E+ I  TP L+
Sbjct: 369 LGGIFQKKNNHRIDKVPGFGNIPFLGALFRQDVNQQRRRELVIFITPKLI 418


>gi|229220650|ref|YP_052181.2| putative outer membrane porin HofQ [Pectobacterium atrosepticum
           SCRI1043]
          Length = 383

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + L+ +G    +    +        +F      +    +       L
Sbjct: 149 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 208

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 209 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 268

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +   + G+  +   ++  T V +  G TI
Sbjct: 269 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 328

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 329 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 379


>gi|313501056|gb|ADR62422.1| PilQ [Pseudomonas putida BIRD-1]
          Length = 384

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 45/236 (19%), Positives = 95/236 (40%), Gaps = 2/236 (0%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++  L++    QV ++  I E   D  K +G +                         G
Sbjct: 141 QLVAQLDVPVR-QVAIEARIVEANVDYEKSLGVRWGGPLYGEKLRPGKELFVDLGLERAG 199

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  +      +  L A+E++     +++P +     ++A    G +  Y+  S S 
Sbjct: 200 SSIGLGLLRGDVLLDLELSAMEKSGNGEIISQPKVVTADKETARILKGTEVPYQETSQS- 258

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           GATSV+  +  + L  TP +    ++ + ++    EP       ++P  R  + +  V +
Sbjct: 259 GATSVSFREASLSLEVTPQITPDNKVIMTVRVTKDEPDYVNALNNVPPIRKNEVNAKVRV 318

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             G TIV+ G+       + + +P    +P +G LFR      +++E+ +  TP +
Sbjct: 319 ADGETIVIGGVYSTSQNNVVDKVPFFGDLPYVGRLFRRDALQEKKSELLVFLTPRI 374


>gi|49613540|emb|CAG76991.1| putative type II secretion system protein [Pectobacterium
           atrosepticum SCRI1043]
          Length = 393

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 56/231 (24%), Positives = 101/231 (43%), Gaps = 6/231 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVL 251
           QV L   I  +  + L+ +G    +    +        +F      +    +       L
Sbjct: 159 QVQLAAHIVTISSEHLQALGVNWGLGEGDAANKALRLNNFNVGLPVDMPAINAGFHLARL 218

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    +  L ALE+ + +  +A P L     Q+AS   G +  Y+  S ++G+TS+   +
Sbjct: 219 NGRLLDLELMALEQESEVEIIASPRLFTAHQQTASIKQGTEIPYQVSSGASGSTSIEFKE 278

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
             + +  TP +L  GRI L ++   + P   +   + G+  +   ++  T V +  G TI
Sbjct: 279 AVLGMEVTPDILRAGRITLNLKISQNMPGQTIKQGDNGEALAIDKQEIQTQVTVADGETI 338

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +   +     +P+LS+IP+ G LFRN        E+ I  TP L+
Sbjct: 339 VLGGIFQQQKKNSDRQVPILSEIPVFGHLFRNHTQQHTRRELVIFITPTLI 389


>gi|242238911|ref|YP_002987092.1| general secretion pathway protein D [Dickeya dadantii Ech703]
 gi|242130968|gb|ACS85270.1| general secretion pathway protein D [Dickeya dadantii Ech703]
          Length = 714

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 116/301 (38%), Gaps = 31/301 (10%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           T+++ G    ++   +   L  T      R+       ++V+N L+I    QV ++  IA
Sbjct: 361 TIIIQGKEVIMRAHDQTNSLIITAPPDIMRDL------EQVINQLDIRRP-QVLVEAIIA 413

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFA----------------ADFGGKFVSEGGDF-S 246
           EV+      +G Q +   +      +                        F S  G F  
Sbjct: 414 EVQDADGLNLGIQWANKRAGMTQYTNTGMPISTAIVGVDQYRDDGTLTSNFSSALGSFNG 473

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
           +       ++  +L AL   +    LA P++  I    A+F  G +    T S +T    
Sbjct: 474 IAAGFYHGNWSMLLTALSSNSKNDVLATPSIVTIDNMEATFNVGQEVPVLTGSQTTSADN 533

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTT 359
             ++V     G+ L   P +     + L+I+ EVS      ++       ++  R  +  
Sbjct: 534 IYSTVERKTVGIKLKVKPQINEGDSVLLQIEQEVSSVADSSSSTSSDLGATFNTRTVNNA 593

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +G T+V+ GLL     +    +PLL  IP+LG LFR+      +  + +   P ++
Sbjct: 594 VMVTNGETVVVGGLLNKSTVETDSKVPLLGDIPVLGNLFRSKSLTVSKRNLMLFLRPTII 653

Query: 420 K 420
           +
Sbjct: 654 R 654


>gi|238764794|ref|ZP_04625736.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
 gi|238696992|gb|EEP89767.1| General secretion pathway protein D [Yersinia kristensenii ATCC
           33638]
          Length = 635

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 98/253 (38%), Gaps = 12/253 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGK 237
            +V+  L++    QV ++  I E +      +G + +                 A+   +
Sbjct: 326 DQVIEKLDVR-RAQVLVEAIIVETQNGEGLNLGIKWANKFHGGVNFLQNPDRIRANNNSE 384

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                    +     + +++ +  AL   +    LA P++  +    A F  G +    T
Sbjct: 385 NPIPTVISGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEFNVGQEVPVLT 444

Query: 298 VSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---S 350
            + +T       S++    GV+L   P +     + L I+ EVS                
Sbjct: 445 STQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSSGTNANNLGSV 504

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R  +  V + SG T+V+ GLL   + ++   +P L  IP++G LF+  + N E++ +
Sbjct: 505 FNKRVVNNAVLVKSGETVVVGGLLDKKLSKVINKVPFLGDIPLIGRLFQQRKENIEKSNL 564

Query: 411 FIAATPFLVKPVA 423
            +   P +++   
Sbjct: 565 ILFIRPTILRETN 577


>gi|50122032|ref|YP_051199.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612558|emb|CAG76008.1| general secretion pathway protein D [Pectobacterium atrosepticum
           SCRI1043]
          Length = 650

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 130/367 (35%), Gaps = 43/367 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
            ANV+        ++  +    + +  +   L R+     N +V        +D V VL 
Sbjct: 219 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKATDLVEVLT 278

Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           G+  +IQ  Q+    +           +T               ++V+  L+I    QV 
Sbjct: 279 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 337

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
           ++  IAEV+      +G Q +   +      +                           +
Sbjct: 338 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATSA 397

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
            G    +     + ++  ++ AL   +    LA P++  +    A+F  G +       +
Sbjct: 398 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 457

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
           T S      +V     G+ L   P +     + L I+ EVS      +        ++  
Sbjct: 458 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 517

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+V+ GLL     +    +P L  IPILG LFR++    ++  + + 
Sbjct: 518 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPFLGDIPILGHLFRSNSQETKKRNLMLF 577

Query: 414 ATPFLVK 420
             P +++
Sbjct: 578 IRPSIIR 584


>gi|300702677|ref|YP_003744277.1| general secretory pathway protein d, type II secretion system
           [Ralstonia solanacearum CFBP2957]
 gi|299070338|emb|CBJ41633.1| General Secretory Pathway protein D, type II secretion system
           [Ralstonia solanacearum CFBP2957]
          Length = 809

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITDGGLV 612

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718


>gi|293610078|ref|ZP_06692379.1| predicted protein [Acinetobacter sp. SH024]
 gi|292827310|gb|EFF85674.1| predicted protein [Acinetobacter sp. SH024]
          Length = 758

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 101/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSF-------ETVLHALERATAIRTLAEPT 276
              +                       L   +F         ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIAGGANKGNGATLALGNFENSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|255067346|ref|ZP_05319201.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
 gi|255048497|gb|EET43961.1| type IV pilus biogeneis protein PilQ [Neisseria sicca ATCC 29256]
          Length = 711

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 120/316 (37%), Gaps = 37/316 (11%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           + N          +L G    + D      +          N+      +K+++ L++  
Sbjct: 397 EDNGSSNSNGRNTLLSGRGSALIDPATNTLIV-------TDNRNVIEKFRKLIDELDVPT 449

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS---------------------------ITGSSSG 225
             QV ++  I E +    + +G +                               G S+ 
Sbjct: 450 R-QVMVEARIVEAKDGFSRDLGVKFGAAGARGRNSWGNDWSAAQNNHNTNASVFRGESAY 508

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           P+ S   +      +     ++   L   +    + A E     +T++ P +     + A
Sbjct: 509 PTWSLQPNVSLPATAATNSIALVRALSSGALGLEISASEATGKSKTISNPRVLTQDRREA 568

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVN 344
           +  SG +  Y+   SS+GATSV+     + L  TP V   G+I + ++     PV   V+
Sbjct: 569 TIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQIIMTVKITKDTPVDCTVD 627

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +      + +  +T   +  GGT+++ G+ ++D       +PLL  IP++G LF++    
Sbjct: 628 SLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDIPVVGNLFKSRAKK 687

Query: 405 REETEIFIAATPFLVK 420
            E  E+ I  TP ++ 
Sbjct: 688 EERRELLIFITPRIMD 703


>gi|126176299|ref|YP_001052448.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
 gi|125999504|gb|ABN63579.1| type IV pilus secretin PilQ [Shewanella baltica OS155]
          Length = 683

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              ++ V+  ++TV++     TI++  R VE+ +                      + I 
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
              QV ++  +  V+ D+ + +G +  +T        S                      
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTADQRLN 489

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                         F V  + D    +  L ALE+      +A P +T  S Q A++   
Sbjct: 490 VNLPSAASNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  +    S+S+GATSVT     + L  TP +    R+ L ++         V+    P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 669 ELLIFVTPKIV 679


>gi|54302290|ref|YP_132283.1| Flp pilus assembly protein [Photobacterium profundum SS9]
 gi|46915712|emb|CAG22483.1| hypothetical Flp pilus assembly protein [Photobacterium profundum
           SS9]
          Length = 296

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 60/261 (22%), Positives = 111/261 (42%), Gaps = 29/261 (11%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            ++V   + + IS+  NK  ++++P   + + V +P  AD+++     +Y+ GK  G  N
Sbjct: 27  STNVSATRTESISVPHNKSRLIEIPGRAKKISVGNPAIADILILRSNKIYVLGKQFGTTN 86

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           VI+     + +  LD+ +  D+  L+  L  F+ +  I V    + +VL G V +     
Sbjct: 87  VIIWDSRDQLITVLDVEVTHDLNALKSKLYEFMPNEKISVYTSQNKLVLSGEVSSADKIA 146

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            AVE++ TF           ++  +++NL+ + G  QV L+VT+AEV+R ++++   +  
Sbjct: 147 TAVEIANTF-----------TADGEIINLMAVGGSHQVMLEVTVAEVQRSLVREFDSKFV 195

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG------------------GDFSVKGVLDRFSFETVL 260
               S   +   A        + G                         +     F    
Sbjct: 196 FAHQSGNWTWGGANGGASVPSNVGIIDPIIDAAISNPLSIDDNGLFASFLSSNTLFAAAF 255

Query: 261 HALERATAIRTLAEPTLTAIS 281
              +     + LAEPTLTAIS
Sbjct: 256 DIAKTNGLAKVLAEPTLTAIS 276


>gi|120600633|ref|YP_965207.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|146294790|ref|YP_001185214.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
 gi|120560726|gb|ABM26653.1| type IV pilus secretin PilQ [Shewanella sp. W3-18-1]
 gi|145566480|gb|ABP77415.1| type IV pilus secretin PilQ [Shewanella putrefaciens CN-32]
          Length = 683

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ ++ + +G +  IT        S             
Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +   +  S     F V  + D    +  L ALE+      +A P +T  S
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            Q A++   G  +    S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V     P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N+    E  E+ I  TP +V 
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680


>gi|127511146|ref|YP_001092343.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
 gi|126636441|gb|ABO22084.1| type IV pilus secretin PilQ [Shewanella loihica PV-4]
          Length = 683

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 119/298 (39%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++  ++  V + +   +   ++   +  +  +++ +L+I    QV ++  +  
Sbjct: 384 LLKGDDASLLSARGTVAVDDRTNTLLVKDTEESLENIHRLVEVLDIPIR-QVLIESRMVT 442

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFGGKFVSEGG 243
           V+ D+ + +G +  IT        S +                                 
Sbjct: 443 VKDDVSEDLGIKWGITDQQGSKGTSGSLEGANDIANGVVPDIGDRLNVNLPAAVANPTSI 502

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+ +    +A P +T  S Q A++   G  +    S+S+G
Sbjct: 503 AFHVAKLADGTLLDLELSALEQESKGEIIASPRITT-SNQKAAYIEQGVEIPYVESASSG 561

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADTTVE 361
           A +V      + L  TP +    R+ L ++         V+   G   S   ++  T V 
Sbjct: 562 AATVQFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPLGQAVSIDTQRIGTQVL 621

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G TIVL G+ +  +      +P+L  IP LG LFRN+    E  E+ I  TP ++
Sbjct: 622 VDHGETIVLGGIYQQQLINRVSKVPVLGDIPFLGYLFRNTTDKNERQELLIFVTPKII 679


>gi|37678398|ref|NP_933007.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
 gi|37197137|dbj|BAC92978.1| type II secretory pathway, component EpsD [Vibrio vulnificus YJ016]
          Length = 672

 Score =  176 bits (447), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 109/318 (34%), Gaps = 47/318 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            G           V  +    +        +   + + V+  L+I    QV ++  I E+
Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGG----------------------------- 236
                  +G Q     + +    S      G                             
Sbjct: 354 AEGDGVNLGVQWGNLETGAVIQYSNTGTPIGKVMVGLEEAKDQTKTEYYTNKDGDRVPYQ 413

Query: 237 ---------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                       +  G       L    +  ++ A+   +    L+ P++T +    ASF
Sbjct: 414 VTESGDYSTLAAALAGVNGAAMSLVMGDWTALISAVSSDSNSNILSSPSITVMDNGEASF 473

Query: 288 TSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             G +    T      ++     +V   + G+ L   P +     + L I+ EVS  +  
Sbjct: 474 IVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLGA 533

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
             A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IPILG LF+++ 
Sbjct: 534 NGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPILGHLFKSTN 592

Query: 403 FNREETEIFIAATPFLVK 420
              E+  + +   P +++
Sbjct: 593 TQVEKKNLMVFIKPTIIR 610


>gi|126640364|ref|YP_001083348.1| putative general secretion pathway protein [Acinetobacter baumannii
           ATCC 17978]
          Length = 667

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 102/269 (37%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 291 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 349

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L   +F+        ++ AL+  T    L+ P+
Sbjct: 350 AAGYLSGGSAGAASAIANGANKGNGATLGLGNFDNSRKAYGALIQALKTNTKSNLLSTPS 409

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 410 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 469

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 470 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 529

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 530 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 558


>gi|121634273|ref|YP_974518.1| pilus secretin [Neisseria meningitidis FAM18]
 gi|120865979|emb|CAM09716.1| pilus secretin [Neisseria meningitidis FAM18]
          Length = 589

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------SSSGPSKSFAADFGG 236
           K+++ L++    QV ++  I E      + +G +   TG       +S       + FGG
Sbjct: 324 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 382

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 383 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKE 442

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 443 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 502

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 503 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 562

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 563 GKKTDRRELLIFITPRI 579


>gi|253689235|ref|YP_003018425.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755813|gb|ACT13889.1| general secretion pathway protein D [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 640

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 132/367 (35%), Gaps = 43/367 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
            ANV+        ++  +    + +  +   L R+     N +V        +D V VL 
Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268

Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           G+  +IQ  Q+    +           +T               ++V+  L+I    QV 
Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
           ++  IAEV+      +G Q +   +      +                           +
Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGADQFRRDGTLGTAATTA 387

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
            GG   +     + ++  ++ AL   +    LA P++  +    A+F  G +       +
Sbjct: 388 LGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRV 353
           T S      +V     G+ L   P +     + L I+ EVS      +        ++  
Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSTNLGATFNT 507

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+V+ GLL     +    +PLL  IP+LG LFR++    ++  + + 
Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTNESASKVPLLGDIPVLGYLFRSNSQETKKRNLMLF 567

Query: 414 ATPFLVK 420
             P +++
Sbjct: 568 IRPSIIR 574


>gi|319428303|gb|ADV56377.1| type IV pilus secretin PilQ [Shewanella putrefaciens 200]
          Length = 683

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 62/261 (23%), Positives = 109/261 (41%), Gaps = 25/261 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++ +L+I    QV ++  +  V+ ++ + +G +  IT        S             
Sbjct: 422 RLVEVLDIPIR-QVLIESRMVTVKDNVSEDLGIRWGITDQQGNKGSSGSLEGAQDIANGI 480

Query: 230 -------FAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                     +   +  S     F V  + D    +  L ALE+      +A P +T  S
Sbjct: 481 VPSIGDRLNVNLPAQVDSAASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-S 539

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            Q A++   G  +    S+S+GATSVT     + L  TP +    R+ L ++        
Sbjct: 540 NQKAAYIEQGIEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSEGK 599

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            V     P+     ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFR
Sbjct: 600 TVPTSTGPAVAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFR 659

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N+    E  E+ I  TP +V 
Sbjct: 660 NTTDKNERQELLIFVTPKIVD 680


>gi|332305113|ref|YP_004432964.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172442|gb|AEE21696.1| type IV pilus secretin PilQ [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 580

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 71/351 (20%), Positives = 141/351 (40%), Gaps = 27/351 (7%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +        +   + +A L   +   +  +  + + V+   +L    
Sbjct: 227 RLEGNILLIAPSEELASRETQQLQNRQQVAQLAPLISANLQINYAKAKEVAG--ILKNTD 284

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN-SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
            +I   + +V + E   +   R+  A+   ++K+++ L+I  + QV ++  +  VR +  
Sbjct: 285 NSILSPRGSVAVDERTNTVLLRDTQASIDEARKLISALDIPVK-QVLIESRMVTVRDNAG 343

Query: 211 KQIGFQHSITGSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGV 250
           +Q+G +   + +S   + S                       +      +      V  +
Sbjct: 344 EQLGVRWGFSNNSGDTATSGTIEGADTLSSGVVPSIDNRLNVNLPVTSPAGSIGIQVARL 403

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +D    +  L ALE       +A P +T  + + A    G +  Y   +SS GATSV   
Sbjct: 404 VDGTILDLELSALESENKGEVIASPRITVANQREAYIEQGTEIPYVQSTSS-GATSVEFK 462

Query: 311 DYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
              + L  TP +    RI L   +  +     +  + G   +   ++  T V + +G TI
Sbjct: 463 KAVLSLKVTPHITPDHRIILDLVVTQDTRGDTVNTSTGLAVAIDTQEISTQVLVNNGETI 522

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +         +PLL  IP+LG LF+N++   E+ E+ I  TP ++
Sbjct: 523 VLGGIFQQTSTDDVSQVPLLGDIPVLGHLFKNTQTVNEKRELLIFVTPKIL 573


>gi|42186|emb|CAA49645.1| outD [Pectobacterium carotovorum]
          Length = 649

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           ++V+  L+I    QV ++  IAEV+      +G Q +   +      +            
Sbjct: 322 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 380

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          + GG   +     + ++  ++ AL   +    LA P++  +    
Sbjct: 381 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 440

Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           A+F  G +       +T S      +V     G+ L   P +     + L I+ EVS   
Sbjct: 441 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 500

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +        ++  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG L
Sbjct: 501 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 560

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FR++    ++  + +   P +++
Sbjct: 561 FRSNSTETKKRNLMLFIRPSIIR 583


>gi|262170336|ref|ZP_06038014.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
 gi|261891412|gb|EEY37398.1| type II secretory pathway component PulD [Vibrio mimicus MB-451]
          Length = 675

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
           +       +G Q         I   ++G S                              
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 412

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D+     +  G       +    +  +++A+   +    L+ P++T +    
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|24371883|ref|NP_715925.1| type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
 gi|24345706|gb|AAN53370.1|AE015476_11 type IV pilus biogenesis protein PilQ [Shewanella oneidensis MR-1]
          Length = 684

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++   + +V + E   +   ++      +  +++ +L+I    QV ++  +  
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243
           V+ D+ + +G +  +T        S + +  G   +                        
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGNKGTSGSLEGAGDIANGKVPSLDNRLNVNLPAAVTNPTSI 503

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
           ATSVT     + L  TP +    R+ L ++         V+    P+     ++  T V 
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|261211295|ref|ZP_05925584.1| type II secretory pathway component PulD [Vibrio sp. RC341]
 gi|260839796|gb|EEX66407.1| type II secretory pathway component PulD [Vibrio sp. RC341]
          Length = 675

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 116/321 (36%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S           +  +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHSDTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
           +       +G Q         I   ++G S                              
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKKPIRNSDTGEIKY 412

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D+     +  G       +    +  ++ A+   +    L+ P++T +    
Sbjct: 413 YEETTTKGDYSTLASALSGLQGAAVSIALGDWTALISAVSNDSKSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L+I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|114045758|ref|YP_736308.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
 gi|113887200|gb|ABI41251.1| type IV pilus secretin PilQ [Shewanella sp. MR-7]
          Length = 684

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++   + +V + E   +   ++      +  +++ +L+I    QV ++  +  
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243
           V+ D+ + +G +  +T        S   +  G   +                        
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIATGTVPSLDNRLNVNLPAAVTNPTSI 503

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
           ATSVT     + L  TP +    R+ L ++         V+    P+     ++  T V 
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|258620393|ref|ZP_05715431.1| general secretion pathway protein D [Vibrio mimicus VM573]
 gi|258624627|ref|ZP_05719563.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258583091|gb|EEW07904.1| general secretion pathway protein D [Vibrio mimicus VM603]
 gi|258587272|gb|EEW11983.1| general secretion pathway protein D [Vibrio mimicus VM573]
          Length = 675

 Score =  176 bits (446), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
           +       +G Q         I   ++G S                              
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGIEEAKDTTEKRPIRDSNTGAIKY 412

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D+     +  G       +    +  +++A+   +    L+ P++T +    
Sbjct: 413 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|238787297|ref|ZP_04631096.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
 gi|238724559|gb|EEQ16200.1| General secretion pathway protein D [Yersinia frederiksenii ATCC
           33641]
          Length = 657

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 107/282 (37%), Gaps = 18/282 (6%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +I+   +   L  T   +  +         +V+  L+I    QV ++  I E +      
Sbjct: 325 SIKAHDQTNSLVITAAPKIMKEL------DQVIEKLDIR-RAQVLVEAIIVETQNGEGLN 377

Query: 213 IGFQHSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +G Q +                    G + +       +     + +++ +  AL     
Sbjct: 378 LGVQWANKFHGGVNFLQNPESVKNKNGSENIVPKLITGLTAGFYKGNWDGLFTALATNLN 437

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
              LA P++  +    A F  G +       +T ++     S++    GV+L   P +  
Sbjct: 438 NNILATPSIVTLDNMEAEFNVGQEVPILTSTQTTTTDKVYNSISRQSVGVMLKVKPQINK 497

Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
              + L I+ EVS      +         +  R  +  V + SG T+V+ GLL   + + 
Sbjct: 498 GDSVLLEIRQEVSSVADSSDINTHNLGSVFNKRIVNNAVLVKSGETVVVGGLLDKKVNKT 557

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
              +PLL  IP +GALFR S+   E++ + +   P +++  +
Sbjct: 558 INKVPLLGDIPFIGALFRQSKEKVEKSNLILFIKPTILRETS 599


>gi|313200821|ref|YP_004039479.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312440137|gb|ADQ84243.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 671

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/468 (16%), Positives = 168/468 (35%), Gaps = 63/468 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P   E   A I +    + +   I+  L+K I          V +   +  D +     T
Sbjct: 181 PVSLEFRDANIKMVFEALSRATGINFILDKDIRADAK---ATVYIRKASIEDAIEMVLAT 237

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLD-------ILIERDIAHLEMTLRRFIADSNIRVE 139
             L  K + + + ++  +  +++ +          L       +  TL+  +   ++ V+
Sbjct: 238 NGLQKKALTETSALIFPNTPQKVKDYKELMIRSFYLTNASAKQVASTLKTVLKTKDVVVD 297

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+             + ++E  ++ +                     + +V L+
Sbjct: 298 ERLNMIVMRDTP-------EVIHIAEKLVAANDL------------------ADPEVMLE 332

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVK 248
           + + E+ R  L+++G  +    S +       +  G                  G  ++ 
Sbjct: 333 IEVLEISRSRLQELGIAYPNQISVNSRIPVTTSTAGSGIAVTSTVATDSPLTLEGLLNLN 392

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---AT 305
                 S    ++  +    +  ++ P +   + + A    G +    T +S+     + 
Sbjct: 393 SSRFDVSPNPAVNFRKTTGDVNLISNPRIRVRNNEKAKILVGDKVPIITTTSTANVGISE 452

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVEL 362
           +VT  D G+ L   P +     + ++I  EVS   +     N   + +   R A T + L
Sbjct: 453 NVTYIDVGLKLDVEPRITLDDFVNIKIGLEVSSLGDRTTTRNGATVYTIGTRNASTLLRL 512

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G   +LAGL++D+ ++    +P L  IPILG LF N    + +TEI +A TP ++   
Sbjct: 513 KDGEMQILAGLIQDEERKNASKLPALGDIPILGRLFSNQEDRKNKTEIVLAITPRIL--- 569

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
              ++ RPD       +   ++    N I    + +   G     A G
Sbjct: 570 --GNIRRPD------AEISEYWSGTENGISDKPQLAAPAGGGSPAASG 609


>gi|241767965|ref|ZP_04765503.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
 gi|241360839|gb|EER57693.1| type II and III secretion system protein [Acidovorax delafieldii
           2AN]
          Length = 381

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 59/272 (21%), Positives = 102/272 (37%), Gaps = 36/272 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV ++  I EV  + L + G Q      S G     A                 G+
Sbjct: 86  GRRAQVLVESLIVEVSTNKLAEFGIQWQSVLGSKGDGMVGAIGTNSGLAGANIIGLAAGI 145

Query: 251 --------------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                                       ++    + + L+ +     L+ P L  +  + 
Sbjct: 146 AQGGTAAATAAGKLGGGLNVALAPRVNGQYYLGALANFLQNSGDANVLSTPNLMTLDNEE 205

Query: 285 ASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           A    G    + T S +            T+V   D G++L   P +   G + L I  E
Sbjct: 206 AKIIIGSNVPFVTGSYANTGGNSGAVNPFTTVERKDVGLMLKVRPQINENGTVKLAIYQE 265

Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS+     V+  + P+   R  ++ V +  G  IV+ GLL+D   Q ++ +PL+  IP+L
Sbjct: 266 VSKIDEATVSNANGPTTSKRSIESNVLVEDGNIIVIGGLLEDSYSQGEDKVPLMGDIPLL 325

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFR+   +R++T + +   P +V+  A  D
Sbjct: 326 GNLFRSENRSRKKTNLMVFLRPVVVRDAAASD 357


>gi|208811320|ref|ZP_03253080.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208817430|ref|ZP_03258459.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208823379|ref|ZP_03263696.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209395621|ref|YP_002268498.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217329885|ref|ZP_03445960.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
 gi|208729950|gb|EDZ79167.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4206]
 gi|208730607|gb|EDZ79306.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4045]
 gi|208736974|gb|EDZ84659.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157076|gb|ACI34510.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4115]
 gi|217317116|gb|EEC25549.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           TW14588]
          Length = 655

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     + V++ L+I    QV ++  IAE++      +G Q     +      S  
Sbjct: 324 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 382

Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             +  +      +     + ++  +L AL  ++    LA P++ 
Sbjct: 383 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 442

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A+F  G +    + S +T       +V     G+ L   P +     + L I+ 
Sbjct: 443 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 502

Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS   +  +        ++  R     + + +G T+V+ GLL   I+  +  +PLL  I
Sbjct: 503 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 562

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR       +  + +   P +++
Sbjct: 563 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 591


>gi|113972026|ref|YP_735819.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
 gi|113886710|gb|ABI40762.1| type IV pilus secretin PilQ [Shewanella sp. MR-4]
          Length = 684

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++   + +V + E   +   ++      +  +++ +L+I    QV ++  +  
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------------------G 243
           V+ D+ + +G +  +T        S   +  G   +                        
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGTVPTLDNRLNVNLPAAVTNPTSI 503

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
           ATSVT     + L  TP +    R+ L ++         V+    P+     ++  T V 
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|320529858|ref|ZP_08030935.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
 gi|320137876|gb|EFW29781.1| type IV pilus secretin PilQ [Selenomonas artemidis F0399]
          Length = 426

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 71/284 (25%), Positives = 122/284 (42%), Gaps = 15/284 (5%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V      +R +  + T        +    + +++++ L++    QV+L+  +  V +  
Sbjct: 143 EVSASDTGRRVLVDTATNTLLFYGTEAEAFAVREIISALDVK-PRQVSLEARVVSVSKAA 201

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFET 258
            KQ+G   + +     PS        G+    G                 GV   F +  
Sbjct: 202 AKQLGVDWTWSALPQYPSVDAGGRVTGRSTGGGRTGTSAPGIIRFGRGPAGVPYEFYYSA 261

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--GATSVTTHDYGVVL 316
            + AL      + LA P +T + G+ A    G +      + S     +++   + G++L
Sbjct: 262 AISALITDGKAKMLARPNVTTVQGREALINIGAEVPVPRTTMSDHVTTSAIDYREAGIIL 321

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            +TP V + G I  R+ TEVS PV  V       ++ R ADTTV L  G T+V+ GL+  
Sbjct: 322 RYTPRVTADGTITARVHTEVSTPVY-VEELKAYRFQKRSADTTVRLRDGETMVIGGLIDS 380

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           D  +    IP L  +P+LGA FR+ R N+ E+E+ I  T  ++ 
Sbjct: 381 DESRSLSKIPFLGDLPVLGAFFRSVRTNKTESELMIFLTARVLD 424


>gi|95928759|ref|ZP_01311505.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135104|gb|EAT16757.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 727

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 66/303 (21%), Positives = 114/303 (37%), Gaps = 21/303 (6%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
            I V    DT  +  ++  +  +Q  V+L E        +  +     +++         
Sbjct: 429 EIFVINYKDTEAIEDVIDDVLSNQGEVQLIEGSKKIMVNDIPSKLEEIRMLINQLDEPVK 488

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADFGGKFVSEGGDF 245
           QV ++  I E      +  G        +   S          +     GG F++     
Sbjct: 489 QVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGLGGNFITPTSAT 548

Query: 246 SVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
              G         LD    +  L ALE +   + ++ P + A+ G++A    G +  YKT
Sbjct: 549 DGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETARIGQGTEIPYKT 608

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              S   T+       + L  TP +     I L I    S P  GV   D  +   ++A+
Sbjct: 609 T--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYTDGVAINTKEAE 664

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + L +G T V+ G+  ++ Q    G P L  +P +G LF+    + + TE+ I  TP 
Sbjct: 665 TKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSNDRTELLIFLTPH 724

Query: 418 LVK 420
           +V 
Sbjct: 725 IVD 727


>gi|304412135|ref|ZP_07393744.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|307306879|ref|ZP_07586619.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
 gi|304349401|gb|EFM13810.1| type IV pilus secretin PilQ [Shewanella baltica OS183]
 gi|306910457|gb|EFN40887.1| type IV pilus secretin PilQ [Shewanella baltica BA175]
          Length = 683

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              ++ V+  ++TV++     TI++  R VE+ +                      + I 
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
              QV ++  +  V+ D+ + +G +  +T        S                      
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                         F V  + D    +  L ALE+      +A P +T  S Q A++   
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  +    S+S+GATSVT     + L  TP +    R+ L ++         V+    P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 669 ELLIFVTPKIV 679


>gi|153002584|ref|YP_001368265.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160877305|ref|YP_001556621.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|151367202|gb|ABS10202.1| type IV pilus secretin PilQ [Shewanella baltica OS185]
 gi|160862827|gb|ABX51361.1| type IV pilus secretin PilQ [Shewanella baltica OS195]
 gi|315269510|gb|ADT96363.1| type IV pilus secretin PilQ [Shewanella baltica OS678]
          Length = 683

 Score =  176 bits (446), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              ++ V+  ++TV++     TI++  R VE+ +                      + I 
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
              QV ++  +  V+ D+ + +G +  +T        S                      
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                         F V  + D    +  L ALE+      +A P +T  S Q A++   
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  +    S+S+GATSVT     + L  TP +    R+ L ++         V+    P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 669 ELLIFVTPKIV 679


>gi|332994686|gb|AEF04741.1| putative type IV pilus biogenesis protein PilQ [Alteromonas sp.
           SN2]
          Length = 586

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 62/308 (20%), Positives = 118/308 (38%), Gaps = 33/308 (10%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           + I        +   G V   + +   +               +   ++K+++ L+I  +
Sbjct: 286 ATILKSSEGGILSERGTVTVDERTNTML---------IRDTLPSIDEARKMIDALDIPVK 336

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--------------------FAAD 233
            QV ++  +  V  ++ +++G +  ++   S    S                       +
Sbjct: 337 -QVLIESRMVTVLDNVDEELGVRWGLSDRESDSGVSGSIEGAETIAGGSIPSIDDRLNVN 395

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 +    F +  ++D    +  L ALE       +A P +T  + Q A    G + 
Sbjct: 396 LPVSSAAGTIGFQIASLVDGTILDLELSALESENKGEIIASPRITVANQQEAYIEQGTEI 455

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSY 351
            Y   +SS GATSV      + L  TP +    RI L   +  +     +  + GD  + 
Sbjct: 456 PYVQATSS-GATSVEFKKAVLSLRVTPQITPDNRIILDLVVTQDTRGETVSTSTGDAVAI 514

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             ++  T V + +G TIVL G+ +         +PL   +P LG LFRN+   +E+ E+ 
Sbjct: 515 DTQEIKTQVLVENGETIVLGGIFQQTSTDSVSKVPLFGDLPFLGVLFRNTSEFQEKRELL 574

Query: 412 IAATPFLV 419
           I  TP ++
Sbjct: 575 IFVTPKII 582


>gi|330447077|ref|ZP_08310727.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491268|dbj|GAA05224.1| type IV pilus secretin PilQ family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 569

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/414 (17%), Positives = 145/414 (35%), Gaps = 35/414 (8%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
                +      I      ++ ++  +   V + + D  V  P   D+++ S        
Sbjct: 163 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 216

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM- 150
           K V  + +++            ++  +        LR  +   N   +      +L G  
Sbjct: 217 KRVRGSVLLVAPKSELTASEHQVMEAKRKQQELSNLRSELIQVN-YAKATDIAALLSGST 275

Query: 151 --VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             V  + +         T            SS K ++  L+I  + QV ++  I  +   
Sbjct: 276 DGVGMLSERGSLHVDERTNSLIIKDISDNISSIKNIVESLDIPVK-QVQIEARIVTINEG 334

Query: 209 ILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------- 250
            + ++G +  ++     ++ G S        G    +        V              
Sbjct: 335 DIDELGVRWGVSKVDGDTTIGGSIEGNLASSGLLDDDATVDDFLNVNLGASAGAASIAFQ 394

Query: 251 ---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              L     +  L AL+       ++ P L   + ++A    G +  Y    SS+GATSV
Sbjct: 395 VAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGATSV 453

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSG 365
           +     + L  TP +    ++ L ++         +    G   S   ++  T V + +G
Sbjct: 454 SFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGEGTAVSIDTQRIGTQVLVNNG 513

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T+VL G+ +  +  +   +P+L  IP+LGALFR+      + E+ I  TP +V
Sbjct: 514 ETVVLGGIYQHSMTNVTRKVPVLGDIPVLGALFRHKMEQMGKRELLIFVTPKIV 567


>gi|261820712|ref|YP_003258818.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
 gi|261604725|gb|ACX87211.1| general secretion pathway protein D [Pectobacterium wasabiae
           WPP163]
          Length = 640

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 68/367 (18%), Positives = 133/367 (36%), Gaps = 43/367 (11%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLH 148
            ANV+        ++  +    + +  +   L R+     N +V        +D V VL 
Sbjct: 209 TANVVADERTNSVLVRGEPNSRQRVIDMVKQLDRQQAVQGNTKVIYLKYAKAADLVEVLT 268

Query: 149 GMVRTIQDSQRAVELS-----------ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           G+  +IQ  Q+    +           +T               ++V+  L+I    QV 
Sbjct: 269 GVGDSIQTDQQNALPALRKDISIKAHEQTNSLIVNAAPDIMRDLEQVIAQLDIRRP-QVL 327

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFVS 240
           ++  IAEV+      +G Q +   + +    +                           +
Sbjct: 328 VEAIIAEVQDADGMNLGVQWANKNAGTTQFTNTGLPITTMMAGADQFRRNGTLSTAATSA 387

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YK 296
            G    +     + ++  ++ AL   +    LA P++  +    A+F  G +       +
Sbjct: 388 LGSFNGIAAGFYQGNWSMLMTALSSNSKNDILATPSIVTLDNMEATFNVGQEVPVLAGSQ 447

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRV 353
           T S      +V     G+ L   P +     + L I+ EVS      ++       ++  
Sbjct: 448 TTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVADAASSSSAELGATFNT 507

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R  +  V + SG T+V+ GLL    ++    +PLL  IPILG LFR++     +  + + 
Sbjct: 508 RTVNNAVLVSSGETVVVGGLLDKSTRESASKVPLLGDIPILGHLFRSNSQETSKRNLMLF 567

Query: 414 ATPFLVK 420
             P +++
Sbjct: 568 IRPSIIR 574


>gi|291612969|ref|YP_003523126.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
 gi|291583081|gb|ADE10739.1| general secretion pathway protein D [Sideroxydans lithotrophicus
           ES-1]
          Length = 690

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 81/448 (18%), Positives = 159/448 (35%), Gaps = 50/448 (11%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT--M 87
            + +A    +  V+      ++  +N++    +P         D  +  V++   RT  +
Sbjct: 183 DQPSADAPIVIPVKHASAVDLANIINRL----MPEAAASQSGGDDNQRFVLLADSRTNGL 238

Query: 88  YLFGKNVGQAN-----VILIGHDGKQMLNLDILIERDIAH--LEMTLRRFIADSNIRVEM 140
            L   N G+       V  +        N+ ++  ++     L  TLR  ++        
Sbjct: 239 LLRSGNPGRIARVKELVTKLDSAANTPGNIHVVQLKNADATKLAQTLRSVLSGETAPPAA 298

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
            S      G+  +     +A   S   +  +    Y N  S  V++ L++    Q+ ++ 
Sbjct: 299 PSTVPQSAGVATSSTGMIQADPSSNALIVTASEPIYNNLRS--VIDKLDVRRP-QIFVEA 355

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG------------------ 242
            I EV  D   + G Q      +S              V+ G                  
Sbjct: 356 LIVEVTADKAAEFGVQWQNLVGASKSGAHIIGGTNFGSVASGNNIIDAANNLSTVNQGLN 415

Query: 243 -----GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                G  ++ GV    +   +  ALE  T    L+EP L  +  + A    G    + T
Sbjct: 416 IGIVNGTTTIPGVGTVLNLGMLARALETDTNANILSEPNLMTLDNEEAKIVVGQNVPFIT 475

Query: 298 VS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
                     ++T   ++   D G+ L   P ++  G + L+I  EVS  +   ++    
Sbjct: 476 GQYAQTGSATTATPFQTIERKDVGLTLKIKPQIMQGGTVKLQIYQEVSSVLPSSSSSTSG 535

Query: 350 SY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R  ++ + +     +VL GL++D +  ++   PLL  IPILG+LFR       +T
Sbjct: 536 LITNKRSIESNILVDDNQIVVLGGLIQDSVNDVQSKTPLLGDIPILGSLFRYDTRQHTKT 595

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436
            + +   P+++         +  D++  
Sbjct: 596 NLMVFIRPYIM--YQQNSYQQLTDNFYE 621


>gi|83746397|ref|ZP_00943449.1| GspD [Ralstonia solanacearum UW551]
 gi|83726938|gb|EAP74064.1| GspD [Ralstonia solanacearum UW551]
          Length = 809

 Score =  176 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718


>gi|207722789|ref|YP_002253224.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
 gi|206587973|emb|CAQ18554.1| general secretory pathway protein d [Ralstonia solanacearum MolK2]
          Length = 809

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 433 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 492

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 493 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 552

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 553 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 612

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 613 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 672

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y
Sbjct: 673 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 718


>gi|323497014|ref|ZP_08102037.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
 gi|323317858|gb|EGA70846.1| general secretion pathway protein D [Vibrio sinaloensis DSM 21326]
          Length = 675

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 63/460 (13%), Positives = 149/460 (32%), Gaps = 97/460 (21%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        ++   S   M    + + +        
Sbjct: 163 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTDTKNTP 222

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR 152
                 ++        +++ D         +   LR  I   ++ +    +  V++    
Sbjct: 223 AFLKPKLVADDRTNSILISGD-------PQVRQRLRNLIKQLDVEMASKGNNRVVYLKYA 275

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKK----------------------------V 184
             ++    ++     L     +    +S+K+                            V
Sbjct: 276 NAEELVEVLKGVSDNLQAEKSSGKKGTSAKRGEVMIAAHPDTNALVLTAPPDIMNALQDV 335

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------- 223
           +  L+I    QV ++  I E+       +G Q     +                      
Sbjct: 336 IAQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNTGAPIGQVMVGLEE 394

Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                + +   DF     +          +    +  ++ A+  
Sbjct: 395 AKDTETTKAVYDSDGEFVRNETTTEKGDFTTLAAALSSVNGAALSVVMGDWTALISAVST 454

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320
            +    L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P
Sbjct: 455 DSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVP 514

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +     + L+I+ EVS  +    A D+  +  R+ +T+V +  G  IVL GL+ +   +
Sbjct: 515 QINEGNSVQLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQMIVLGGLIDERALE 573

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  +PLL  IP+LG LF+++    E+  + +   P +++
Sbjct: 574 SESKVPLLGDIPVLGHLFKSTNTQVEKKNLMVFIKPTIIR 613


>gi|89075207|ref|ZP_01161638.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
 gi|89049029|gb|EAR54596.1| putative fimbrial assembly protein [Photobacterium sp. SKA34]
          Length = 568

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 74/416 (17%), Positives = 143/416 (34%), Gaps = 39/416 (9%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
                +      I      ++ ++  +   V + + D  V  P   D+++ S        
Sbjct: 162 FQDIPVRNVLQLIADYNDFNLVVSDSVSGNVTLRLDD--VPWPQVLDIILQSKD----LD 215

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           K V  + +++            ++  +      ++LR  +   N   +      +L G  
Sbjct: 216 KRVRGSVLLVAPKAELTANEHQVMEAKRKQQELLSLRSDLIQVN-YAKATDIAELLSGNA 274

Query: 152 RTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
             +        L     T             S K +++ L+I  + QV ++  I  +   
Sbjct: 275 DGVGMLSERGSLHVDERTNALIIKDTPDNIRSIKDIVSSLDIPVK-QVQIEARIVTINEG 333

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------------GDF 245
            + ++G +  +  S      +      G   S G                          
Sbjct: 334 DIDELGVRWGV--SKVNGDTTVGGSIEGNLASSGLLGENASVDDFLNVNLGAGAGAASIA 391

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                L     +  L AL+       ++ P L   + ++A    G +  Y    SS+GAT
Sbjct: 392 FQVAKLGNILLDLELSALQTENKAEIISSPRLMTTNKKTAYIEQGTEIPYLEA-SSSGAT 450

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELP 363
           SV+     + L  TP +    ++ L ++         +    G   S   ++  T V + 
Sbjct: 451 SVSFKKAVLSLMVTPQITPDDKLVLDLEVTQDNKGEDVPTGTGTAISIDTQRIGTQVLVN 510

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ +  +  +   +PLL  IPILGALFR+      + E+ I  TP +V
Sbjct: 511 NGETVVLGGIYQHSMTHVTRKVPLLGDIPILGALFRHKMEQMGKRELLIFVTPKIV 566


>gi|254238253|ref|ZP_04931576.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
 gi|126170184|gb|EAZ55695.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa C3719]
          Length = 710

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E      K +G +      +   +        G      
Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494

Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                              +  + D    +  L A+E+      
Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDATSGIGIGFITDNIILDLQLSAMEKTGNGEV 554

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI + 
Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++     P        +P     + +  + +  G TIV+ G+  +   +  + +P L  +
Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673

Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
           P LG LFR    +  + E+ +  TP +
Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700


>gi|322421237|ref|YP_004200460.1| general secretion pathway protein D [Geobacter sp. M18]
 gi|320127624|gb|ADW15184.1| general secretion pathway protein D [Geobacter sp. M18]
          Length = 638

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 106/254 (41%), Gaps = 14/254 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------- 234
           +V+  L+     QV ++  IAEV  +  K +G Q  +  ++S  + S    F        
Sbjct: 345 QVIQKLD-RRSRQVYVQAMIAEVSVNKAKDLGVQLGVITAASNGTVSAIGTFDPFGTVAG 403

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               V+      ++  L + +   VL AL+   A+  L+ P +     + A    G    
Sbjct: 404 LSTTVTAAKALGMEVTLGKVNIPVVLQALQTNGALNVLSTPNIMTSDNKEAEIFVGESVP 463

Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMP 349
           + + ++ T       S+   D G++L   P +     + L I  E+S     G       
Sbjct: 464 FVSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYVKLDIYQEISAVKEFGTATESNL 523

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T+V + +  T+++ GL++D  Q  +  IPLL  IP LG LF+     R++  
Sbjct: 524 GSTKRSAKTSVVVKNSDTVLIGGLIQDTDQVTESKIPLLGDIPGLGWLFKTRSTKRDKVN 583

Query: 410 IFIAATPFLVKPVA 423
           + I  TP ++K   
Sbjct: 584 LLIMLTPRIIKDAR 597


>gi|217975149|ref|YP_002359900.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
 gi|217500284|gb|ACK48477.1| type IV pilus secretin PilQ [Shewanella baltica OS223]
          Length = 683

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 49/311 (15%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              ++ V+  ++TV++     TI++  R VE+ +                      + I 
Sbjct: 395 PRGSVAVDERTNTVLVKDTAETIENIHRLVEVLD----------------------IPIR 432

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------------------- 231
              QV ++  +  V+ D+ + +G +  +T        S                      
Sbjct: 433 ---QVLIESRMVTVKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAQSIANGIIPTPDQRLN 489

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                         F V  + D    +  L ALE+      +A P +T  S Q A++   
Sbjct: 490 VNLPAAATNPASIAFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQ 548

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           G  +    S+S+GATSVT     + L  TP +    R+ L ++         V+    P+
Sbjct: 549 GVEIPYVQSTSSGATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPA 608

Query: 351 --YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  
Sbjct: 609 VAIDTQRIGTQVLVNNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQ 668

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 669 ELLIFVTPKIV 679


>gi|117922327|ref|YP_871519.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
 gi|117614659|gb|ABK50113.1| type IV pilus secretin PilQ [Shewanella sp. ANA-3]
          Length = 684

 Score =  176 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 124/298 (41%), Gaps = 26/298 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAE 204
           +L G   ++   + +V + E   +   ++      +  +++ +L+I    QV ++  +  
Sbjct: 385 LLKGADSSLLSPRGSVAVDERTNTVLVKDTAEIIENIHRLVEVLDIPIR-QVLIESRMVT 443

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------------GG 243
           V+ D+ + +G +  +T        S   +  G   +                        
Sbjct: 444 VKDDVSEDLGIRWGVTDQQGSKGTSGTLEGAGSIANGVVPSLDNRLNVNLPAAVTNPTSI 503

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F V  + D    +  L ALE+      +A P +T  S Q A++   G  +    S+S+G
Sbjct: 504 AFHVAKLADGTILDLELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSG 562

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVE 361
           ATSVT     + L  TP +    R+ L ++         V+    P+     ++  T V 
Sbjct: 563 ATSVTFKKAVLSLRVTPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVL 622

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G TIVL G+ + ++      +P+L  IP++G LFRN+    E  E+ I  TP +V
Sbjct: 623 VDNGETIVLGGIYQQNLISRVSKVPILGDIPLVGFLFRNTTDKNERQELLIFVTPKIV 680


>gi|262044789|ref|ZP_06017834.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037872|gb|EEW39098.1| general secretion pathway protein D [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 657

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/412 (18%), Positives = 146/412 (35%), Gaps = 54/412 (13%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
           ANV+        +++ +    + I  +   L R+     N +V        +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
           +  ++Q  +++               +  +++             ++V+  L+I    QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            ++  IAEV+      +G Q +   +      +                           
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +L AL  +T    LA P++  +    A+F  G +    T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       +V     G+ L   P +     + L I+ EVS      ++       ++ 
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
              P +++           D Y      +   FN        KE+SE    +
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEASLSS 627


>gi|90414685|ref|ZP_01222656.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90324227|gb|EAS40802.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 670

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 107/289 (37%), Gaps = 42/289 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   + + ++  L+I    QV ++  I E+        G Q+           +  
Sbjct: 322 TAPPDIMRALESIIAQLDIR-RAQVLIEAMIVELSEGDGINFGVQYGSEDGGVIQFGNSG 380

Query: 232 -----------------------------------ADFGGKFVSEGGDFSVKGVLDRFSF 256
                                               DF       GG       +    +
Sbjct: 381 VPISQYAIGLQEAQDVPGSTVTDVNGNVTVNEPTQGDFSTLASVLGGVNGAAMGIVLGDW 440

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHD 311
             +++A+   +    L+ P++T +    ASF  G +    T      S+     +V   +
Sbjct: 441 TMLVNAVATDSNSNILSSPSITVMDNGEASFIVGEEVPVVTGSTSSSSNDNPFQTVERKE 500

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+ L+ TP +     + L+I+ EVS  +    A D+  +  R+ +T+V +  G  I L 
Sbjct: 501 VGIKLNVTPQINEGDSVQLKIEQEVSSVLGASGAVDV-RFAKRQINTSVLVQDGQMIALG 559

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GL+ ++ ++ +  +P+L  IP LG LF+++     +T + +   P +++
Sbjct: 560 GLISEETKESESKVPILGDIPFLGFLFKSTNTTTAKTNLMVFIKPTIIR 608


>gi|152968741|ref|YP_001333850.1| pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238893139|ref|YP_002917873.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae NTUH-K2044]
 gi|150953590|gb|ABR75620.1| Pullulanase D protein [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
 gi|238545455|dbj|BAH61806.1| pullulanase-specific type II secretion system secretin [Klebsiella
           pneumoniae subsp. pneumoniae NTUH-K2044]
          Length = 657

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
           ANV+        +++ +    + I  +   L R+     N +V        +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
           +  ++Q  +++               +  +++             ++V+  L+I    QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            ++  IAEV+      +G Q +   +      +                           
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +L AL  +T    LA P++  +    A+F  G +    T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       +V     G+ L   P +     + L I+ EVS      ++       ++ 
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
              P +++           D Y      +   FN        KE+SE  
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624


>gi|332532305|ref|ZP_08408185.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332038172|gb|EGI74618.1| type IV pilus biogenesis protein PilQ [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 701

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/262 (19%), Positives = 100/262 (38%), Gaps = 28/262 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------------- 229
           +++  L+I    QV ++  +  VR ++ + +G +   +   S    S             
Sbjct: 439 RMIETLDIP-VQQVVIESRMVTVRDNVTEDLGVRWGFSDQGSSVGISGSLEGAEGIYNAT 497

Query: 230 -----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                         +      +      +  + +    +  L ALE       +A P + 
Sbjct: 498 STSDAPSISDRLNVNLPITNPAASIGLHIAKLANGTLIDLELSALEEENKGEIIASPRII 557

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           A + Q A    G +  Y   +SS GAT+V+     + L  TP +    ++ L +      
Sbjct: 558 AANQQKARIEQGTEIPYTESASS-GATTVSFKKAVLSLEVTPHITPDNKVILDLIITQDT 616

Query: 339 --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
               +    G+  S   ++  T V + +G T+VL G+ +  I      +P+L  IP +G 
Sbjct: 617 RGDTVQTGTGEAVSIDTQEIQTQVLVENGQTVVLGGIFQQQIINTTSKVPILGDIPYVGR 676

Query: 397 LFRNSRFNREETEIFIAATPFL 418
           LF+ +    E+ E+ I  TP +
Sbjct: 677 LFKTTSEFNEKRELLIFVTPKI 698


>gi|330010541|ref|ZP_08306775.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
 gi|328534526|gb|EGF61113.1| general secretion pathway protein D [Klebsiella sp. MS 92-3]
          Length = 657

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 75/409 (18%), Positives = 145/409 (35%), Gaps = 54/409 (13%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
           ANV+        +++ +    + I  +   L R+     N +V        +D V VL G
Sbjct: 226 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 285

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
           +  ++Q  +++               +  +++             ++V+  L+I    QV
Sbjct: 286 ISSSLQSDKQSARPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 344

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            ++  IAEV+      +G Q +   +      +                           
Sbjct: 345 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTAIAGANQYNKDGTISSSLAS 404

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +L AL  +T    LA P++  +    A+F  G +    T S
Sbjct: 405 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 464

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       +V     G+ L   P +     + L I+ EVS      ++       ++ 
Sbjct: 465 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 524

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  + +
Sbjct: 525 TRTVNNAVLVGSGETVVVGGLLDKTVTDTADKVPLLGDIPVIGALFRSDSKKVSKRNLML 584

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
              P +++           D Y      +   FN        KE+SE  
Sbjct: 585 FIRPTIIRDR---------DEYRQASSGQYTAFNNAQTKQRGKESSEAS 624


>gi|119475138|ref|ZP_01615491.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
 gi|119451341|gb|EAW32574.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2143]
          Length = 733

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 59/312 (18%), Positives = 116/312 (37%), Gaps = 45/312 (14%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRD 208
             +   S R   + +   +     + A    +  +V+ LL++    QV ++  I      
Sbjct: 418 ASSSMLSARGSVIVDERTNSLLVTETAQKLQELRRVIRLLDVPVR-QVLVEARIVIANSS 476

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG-------------------------------- 236
             +++G +    G +     +     G                                 
Sbjct: 477 FDEELGVKWGAAGVNQINGDNQLFFGGNTESIEASRNSVADAMINIAQGNAITEAILAPD 536

Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    +  G  +V  V      +  L+ALE       +++P +     Q A   SG
Sbjct: 537 ALNVDLGVANPTGSVAVGFVSSDVILQMELNALESQGRGEIVSQPKVITGDKQEAIIKSG 596

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGD 347
            +  Y+   S+ G T+++  +  + L  TP++    RI ++++         V   N G 
Sbjct: 597 SEVPYQES-SANGETTISFKEAVLKLQVTPSITPDDRIIMKLEINQDSIGTLVPSGNGGV 655

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P+    +  T V + +G T+VL G+ +    + +  +P+L  IP LG LF N+   +E+
Sbjct: 656 VPTIDTTELTTQVLVGNGETVVLGGVFRTVDVESESKVPVLGDIPYLGRLFTNTTVTQEK 715

Query: 408 TEIFIAATPFLV 419
           TE  I  TP ++
Sbjct: 716 TETLIFITPRIL 727


>gi|40644697|emb|CAD91899.1| secretin precursor [Neisseria meningitidis serogroup B]
          Length = 761

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 100/257 (38%), Gaps = 22/257 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 496 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGG 554

Query: 233 D--------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           D              +     S+   +   +    L A E  +  +TLA P +   + + 
Sbjct: 555 DDKWGAETKINLPITAAANSISLVRAISSGALNLELSASESLSKPKTLANPRVLTQNRKE 614

Query: 285 ASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           A   SG +  +   S + G  +T+       + L  TP +   G+I + ++     P   
Sbjct: 615 AKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPAQC 674

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +    +     +  +T   + +GGT+++ G+ ++D       +PLL  IP++G LF+  
Sbjct: 675 ASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTR 734

Query: 402 RFNREETEIFIAATPFL 418
               +  E+ I  TP +
Sbjct: 735 GKKTDRRELLIFITPRI 751


>gi|332851464|ref|ZP_08433461.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332866854|ref|ZP_08437241.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
 gi|332729917|gb|EGJ61248.1| general secretion pathway protein D [Acinetobacter baumannii
           6013150]
 gi|332734382|gb|EGJ65503.1| general secretion pathway protein D [Acinetobacter baumannii
           6013113]
          Length = 758

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 103/269 (38%), Gaps = 32/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L++    QV ++  I EV  D   Q+G Q ++   SSG      ++ G    S 
Sbjct: 382 ESAIQQLDVR-RQQVLIEAAIIEVSGDDADQLGIQWALGDLSSGIGLLSFSNVGASLSSI 440

Query: 242 GGDF------------------SVKGVLDRFSFE-------TVLHALERATAIRTLAEPT 276
              +                       L+  +F+        ++ AL+  T    L+ P+
Sbjct: 441 AAGYLSGGSAGAASAIANGANKGNGATLELGNFDNSRKAYGALIQALKTNTKSNLLSTPS 500

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  +  + A    G    + T S +         T+V   D GV L   P +   G + L
Sbjct: 501 IVTMDNEEAYIVVGQNVPFVTGSVTTNSTGINPYTTVERKDVGVTLKVVPHIGEGGTVRL 560

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++ EVS                R   T V    G T+VL GL+ DD    ++GIP LS 
Sbjct: 561 EVEQEVSAVQDSRGQAADLVTSKRAIKTAVLAEHGQTVVLGGLVSDDTSLSRQGIPGLSS 620

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+   +  +  + +   P +V
Sbjct: 621 IPYVGRLFRSDNRSNVKRNLLVFIHPTIV 649


>gi|224372077|ref|YP_002606449.1| putative GspD [Nautilia profundicola AmH]
 gi|223589087|gb|ACM92823.1| putative GspD [Nautilia profundicola AmH]
          Length = 580

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 58/244 (23%), Positives = 115/244 (47%), Gaps = 8/244 (3%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240
           ++  L+I  + QV +K  I E+      QIG +  +   S   S   + +A+ GG  ++ 
Sbjct: 305 IIKALDIP-KMQVYVKARILEISNLKASQIGNKLGLYAGSGTGSGLYTLSANMGGPAIAF 363

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YK 296
                  S+  +    +    +  LE   A + L+EP++  I+   ++   G        
Sbjct: 364 DVTSLGLSIPTIRQGLALGATIDLLETFGAAKKLSEPSILCINNTPSTIYVGKTISVKTG 423

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             +S++ + S +  D G+ L   P + S  ++ L ++  V + + G     +P+   R  
Sbjct: 424 QTTSTSTSVSYSRQDIGLTLEIKPRIDSDNKVSLNVKAVVEDILPGSPDLTLPTTSKRDI 483

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TT  + +G +I++ GL++++     + +P    IPI+GALFR+   N ++T + I  TP
Sbjct: 484 KTTTIVSNGQSIIIGGLVRNNKDITIKKVPFFGDIPIIGALFRHKEVNEDKTTLVIVLTP 543

Query: 417 FLVK 420
           ++VK
Sbjct: 544 YIVK 547


>gi|260774763|ref|ZP_05883666.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260609325|gb|EEX35477.1| general secretion pathway protein D precursor [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 676

 Score =  176 bits (445), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 109/293 (37%), Gaps = 45/293 (15%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
                  ++ + V++ L+I    QV ++  I E+       +G Q         I   ++
Sbjct: 323 TAPPDIMNALQDVISQLDIR-RAQVLIEALIVEMTEGDGINLGVQWGSLETGAVIQYGNA 381

Query: 225 GPSKSFA-------------------------------ADFGGKFVSEGGDFSVKGVLDR 253
           G                                      D+     +  G       +  
Sbjct: 382 GTKIGNVMVGLEEAEDQKSTEYYTNSAGERVPYDVTEPGDYSTLASALSGVNGAALSVVM 441

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVT 308
             +  ++ A+   T    L+ P++T +    ASF  G +    T      ++     +V 
Sbjct: 442 GDWTALISAVSSDTNSNILSSPSITVMDNGEASFIVGEEVPVITGSAAGSNNDNPFQTVD 501

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367
             + G+ L   P +     + L I+ EVS  +   +   +  S+  R+ +T+V +  G  
Sbjct: 502 RKEVGIKLKVVPQINEGNSVQLTIEQEVSNVLPATSNAAVDVSFAKRQLNTSVMVEDGQM 561

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IVL GL+ +  Q+ +  +PLL  IP LG LF+++    +++ + +   P +++
Sbjct: 562 IVLGGLIDERAQESESKVPLLGDIPYLGRLFKSTSSQLQKSNLMVFIKPTIIR 614


>gi|254507255|ref|ZP_05119391.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
 gi|219549715|gb|EED26704.1| general secretion pathway protein D [Vibrio parahaemolyticus 16]
          Length = 678

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 68/462 (14%), Positives = 152/462 (32%), Gaps = 99/462 (21%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        D+   S   M    + + + N      
Sbjct: 164 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVDLDNASAAEMVRIVEALNKTNDSKNTP 223

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV------ 146
                 ++        +++ D         +   LR+ I   ++ +    +  V      
Sbjct: 224 AFLQPKLVADDRTNSILISGD-------PQVRQRLRKLIKQLDVEMASKGNNRVVYLKYA 276

Query: 147 --------LHGMVRTIQD-------------SQRAVELSETFLSQSGRNQYAN--SSSKK 183
                   L G+   +Q                  +  +    +        +  ++ + 
Sbjct: 277 KAEELVDVLKGVSDNLQAEKSAGSKSSSSAKRGEVMIAAHPDTNALVLTAPPDIMNALQD 336

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFA----- 231
           V++ L+I    QV ++  I E+       +G Q         I   ++G           
Sbjct: 337 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAMIQYGNAGAPIGQVMVGLE 395

Query: 232 ----------------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                        D+     +  G       L    +  ++ A+
Sbjct: 396 EAKDTTEKKPIRDSNTGAIKYYEETTKQGDYSTLAAALAGVNGAAVSLVMGDWTALISAV 455

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHF 318
              +    L+ P++T +    ASF  G +    T      ++     +V   + G+ L  
Sbjct: 456 STDSNSNILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKV 515

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  IVL GL+ +  
Sbjct: 516 VPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVNDGQMIVLGGLIDERA 574

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +  +PLL  IP+LG LF+++    E+  + +   P +++
Sbjct: 575 LESESKVPLLGDIPVLGHLFKSTSTQVEKKNLMVFIKPTIIR 616


>gi|224171310|ref|XP_002339480.1| predicted protein [Populus trichocarpa]
 gi|222875215|gb|EEF12346.1| predicted protein [Populus trichocarpa]
          Length = 263

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/254 (23%), Positives = 100/254 (39%), Gaps = 22/254 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK---------SFAADF 234
           ++N L+     QV ++  I E      +  G        +   S          +     
Sbjct: 15  LINQLD-EPVKQVLIEARIVEADTSAEQTFGIHWGFEFDNDSGSSGGGIGSSLDNAVVGL 73

Query: 235 GGKFVSEGGDFSVKGV--------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           GG F++        G         LD    +  L ALE +   + ++ P + A+ G++A 
Sbjct: 74  GGNFITPTSATDGLGTALTFGRVGLDTIVLDLQLSALESSGGGKVISSPKVMALDGETAR 133

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              G +  YKT   S   T+       + L  TP +     I L I    S P  GV   
Sbjct: 134 IGQGTEIPYKTT--SDNGTTTEFKKAELALEVTPLINPDNTILLEILATNSSP--GVAYT 189

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           D  +   ++A+T + L +G T V+ G+  ++ Q    G P L  +P +G LF+    + +
Sbjct: 190 DGVAINTKEAETKLLLKNGETTVIGGIYTENEQNSDSGTPYLKDLPFIGNLFKYKTSSND 249

Query: 407 ETEIFIAATPFLVK 420
            TE+ I  TP +V 
Sbjct: 250 RTELLIFLTPHIVD 263


>gi|56460012|ref|YP_155293.1| Flp pilus assembly protein CpaC [Idiomarina loihiensis L2TR]
 gi|56179022|gb|AAV81744.1| possible Flp pilus assembly protein CpaC [Idiomarina loihiensis
           L2TR]
          Length = 404

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 86/368 (23%), Positives = 150/368 (40%), Gaps = 39/368 (10%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           +   +  I+ +     D+L+SD +  DV V       L G  VG+A+  +     + +  
Sbjct: 34  LEEGETRIISI-EPGSDILISDESVVDVHVLDNSRAILRGVGVGKAD--IWLKSEEVLKE 90

Query: 112 LDILIERDIA-HLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
           L I++   +   LE  L     A+ ++     S   VL G V                  
Sbjct: 91  LKIMVTASLKLSLEGRLEAISEAEQSLNKTEKSGLTVLSGKVS---------------KR 135

Query: 170 QSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                +  + + ++++NL          +TL+V I E +R  L+ +G +       +   
Sbjct: 136 NYEELEKISENHEEILNLTESFQEEPPMLTLRVNILETKRQYLEDLGIRWQ----GTTSG 191

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            +F++   G F  +                + L  ++R    + LA P L+  SG+ A+F
Sbjct: 192 PTFSSSLSGLFEWDA------------EINSQLMLMQRRGLAKLLANPVLSTQSGEKATF 239

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
            +GG+     V  + G   VT  +YG+ L   P VL   RI  ++  E+S     V+   
Sbjct: 240 LAGGELPIPQVV-AQGMQDVTFREYGIRLVIQPVVLDDNRIKTQLHAELSNIDPAVSVSG 298

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+ ++      G T+VL+GLL  D     + IP L  +PIL   FR+ +   + 
Sbjct: 299 VPGILSRRTESVFLSNDGDTLVLSGLLSTDESAQDDQIPGLGSLPILENAFRSQQNREQT 358

Query: 408 TEIFIAAT 415
           TE+ I  T
Sbjct: 359 TELIIMVT 366


>gi|110833080|ref|YP_691939.1| type II secretion system protein [Alcanivorax borkumensis SK2]
 gi|110646191|emb|CAL15667.1| type II secretion system protein, probable [Alcanivorax borkumensis
           SK2]
          Length = 406

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 11/249 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV   + I EV R  L   GF++S            A+  GG     G   S        
Sbjct: 141 QVQTDIRIMEVSRSKLNSFGFEYSNIFDGGNTQVGVASPGGG-----GPSDSFNLFRLGK 195

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +  T+++ALE      TLA+P+LTA+SGQ+A+F SGG+    T S + G   V    +G+
Sbjct: 196 NSTTIINALESGGFAYTLAKPSLTALSGQTATFLSGGEFPVPTRSDNNG-VQVEFKSFGI 254

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRVRKADTTVELPSGGTIVL 370
            L  TPTV+S  +I L++  EVSE             +P  RVR+++TTV L  G T ++
Sbjct: 255 GLALTPTVISGDQIILKVAPEVSELDFSAGVESAGTSIPGLRVRRSETTVSLAPGETFII 314

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP-VAMRDLSR 429
           +GL+  +       IP L  +P+LGA FR+ + +RE+ E+ +  TP LV P  +      
Sbjct: 315 SGLVSQNTVNNSNRIPGLGNLPVLGAFFRSGQLSREDKEMVMVVTPHLVSPGSSTEAGPL 374

Query: 430 PDDHYSVED 438
           P   Y    
Sbjct: 375 PGAGYHNSS 383


>gi|254374542|ref|ZP_04990023.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
 gi|151572261|gb|EDN37915.1| type IV pilin multimeric outer membrane protein [Francisella
           novicida GA99-3548]
          Length = 594

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 154/420 (36%), Gaps = 38/420 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPTPTPTPVDTFVGTTA 409

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             +  V      +  + ALE  +    +A P L   + Q A F   G+ +    ++++GA
Sbjct: 410 KLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
            +V   +  + L  TP +   G I + I    +                P  + R+  T 
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588


>gi|75994479|ref|YP_325593.1| type II secretion protein [Escherichia coli O157:H7 EDL933]
 gi|3822147|gb|AAC70101.1| type II secretion protein [Escherichia coli O157:H7]
          Length = 642

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     + V++ L+I    QV ++  IAE++      +G Q     +      S  
Sbjct: 311 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 369

Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             +  +      +     + ++  +L AL  ++    LA P++ 
Sbjct: 370 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 429

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A+F  G +    + S +T       +V     G+ L   P +     + L I+ 
Sbjct: 430 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 489

Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS   +  +        ++  R     + + +G T+V+ GLL   I+  +  +PLL  I
Sbjct: 490 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 549

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR       +  + +   P +++
Sbjct: 550 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 578


>gi|297517403|ref|ZP_06935789.1| general secretory pathway component, cryptic [Escherichia coli
           OP50]
          Length = 503

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 107/295 (36%), Gaps = 27/295 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   +   V ++    + S       S  +K   V+  L+I    QV ++  I EV+  
Sbjct: 155 PSSSGAMDNVAITADEQTNSLVITADQSVQEKLATVIARLDIR-RAQVLVEAIIVEVQDG 213

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGDFSVKGVLDR--- 253
               +G Q +     +    +                  G   S    + +    +    
Sbjct: 214 NGLNLGVQWANKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPAWDMFSAYNGMAA 273

Query: 254 ----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
                 +  +L AL        LA P++  +  + ASF  G      + S +        
Sbjct: 274 GFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLSGSQTTSGDNVFN 333

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V     G  L  TP V     + L I+ EVS      N+   P++  R     V + +G
Sbjct: 334 TVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNTRTIQNAVLVKTG 393

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            T+VL GLL D  ++     PLL  IP++G LFR +   R +  + +   P +++
Sbjct: 394 ETVVLGGLLDDFSKEQVSKAPLLGDIPLVGQLFRYTSTERAKRNLMVFIRPTIIR 448


>gi|116053188|ref|YP_793509.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115588409|gb|ABJ14424.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 710

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 93/267 (34%), Gaps = 33/267 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E      K +G +      +   +        G      
Sbjct: 436 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHNGNWNSYGKNGNMGIKDKEG 494

Query: 237 -------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                              +  + D    +  L A+E+      
Sbjct: 495 YNCGPFQGQCTFPTRDNSPTPFVDMGAKDASSGIGIGFITDNIILDLQLSAMEKTGNGEV 554

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI + 
Sbjct: 555 VSQPKVVTSDKETAKILKGSEIPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIVE 613

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++     P        +P     + +  + +  G TIV+ G+  +   +  + +P L  +
Sbjct: 614 VKVTKDAPDFQNALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQTKAVDKVPFLGDL 673

Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
           P LG LFR    +  + E+ +  TP +
Sbjct: 674 PYLGRLFRRDTVSDTKNELLVFLTPRI 700


>gi|254516135|ref|ZP_05128195.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
 gi|219675857|gb|EED32223.1| type IV pilus secretin PilQ [gamma proteobacterium NOR5-3]
          Length = 732

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/291 (20%), Positives = 117/291 (40%), Gaps = 36/291 (12%)

Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           + E+  +     + ++  ++  ++++L++I    QV ++  I   + D+ K++G Q    
Sbjct: 438 IVESRTNSLIVTETSSKLAEIRELIDLVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 496

Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251
                 + +  +  G                                 S    F+V    
Sbjct: 497 YLDGDANGNILSVTGDAANAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 556

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +       L ALE A     +++P +     Q A+  SG +  ++  ++S GAT+V   +
Sbjct: 557 NSLYLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 615

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             + L  TP +    RI L +      V + V     G +P+    +  T V + +G T+
Sbjct: 616 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 675

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ + +  +    +P    +P +GALFRN    R +TE  I  TP ++
Sbjct: 676 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESNQRTKTETLIFITPRIL 726


>gi|146280952|ref|YP_001171105.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
 gi|145569157|gb|ABP78263.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri
           A1501]
          Length = 712

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 119/324 (36%), Gaps = 28/324 (8%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           ++A L   + +        +  +  +V  +G V   + S    + +   ++   + +   
Sbjct: 381 ELAPLRREVVQVNYAKAADIARLFQSVTNNGGVAEERGSIAVDDRTNNIIAYQTQERLDE 440

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236
               +++  L+I    QV ++  I E   D  K +G +      +     ++  +     
Sbjct: 441 LR--RIVAQLDIPVR-QVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGKNGNLDI 497

Query: 237 ---------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                                  V       +  V D    +  L A+E+      +++P
Sbjct: 498 EDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQP 557

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI + ++  
Sbjct: 558 KVVTADKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVT 616

Query: 336 VSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             EP         +P+ R  + +  V +  G TIV+ G+  +   +  + +P L  +P L
Sbjct: 617 KDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIGGVFSNTQSKSVDKVPFLGDLPYL 676

Query: 395 GALFRNSRFNREETEIFIAATPFL 418
           G LFR       ++E+ +  TP +
Sbjct: 677 GRLFRRDLVQDRKSELLVFITPRI 700


>gi|28896907|ref|NP_796512.1| general secretion pathway protein D [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260365906|ref|ZP_05778400.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
 gi|260877807|ref|ZP_05890162.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|260895544|ref|ZP_05904040.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|260902568|ref|ZP_05910963.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|28805115|dbj|BAC58396.1| general secretion pathway protein D precursor [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308088533|gb|EFO38228.1| general secretion pathway protein D [Vibrio parahaemolyticus
           Peru-466]
 gi|308089966|gb|EFO39661.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AN-5034]
 gi|308109694|gb|EFO47234.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ4037]
 gi|308113427|gb|EFO50967.1| general secretion pathway protein D [Vibrio parahaemolyticus K5030]
          Length = 675

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 67/455 (14%), Positives = 154/455 (33%), Gaps = 85/455 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
            I +   +  ++ ++   ++ V    D     V + +      + +        N     
Sbjct: 161 NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 220

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 221 EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 280

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 281 VLKGVSDNLQAEKQAGQKGASSAQRGDVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 340

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPS---------------- 227
               QV ++  I E+       +G Q         I   ++G                  
Sbjct: 341 R-RAQVLIEALIVEMSEGDGINLGVQWGSLETGAVIQYGNAGAPIGQVMVGLEEAKDTVE 399

Query: 228 -----------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                             +   D+     +          +    +  ++ A+   +   
Sbjct: 400 KKPIRDSDTGAIKYYEETTTKGDYSTLASALKNVNGAAMSIVMGDWTALVSAVASDSNSN 459

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSP 325
            L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P +   
Sbjct: 460 ILSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEG 519

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +
Sbjct: 520 DSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKV 578

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           PLL  IP+LG LF+++    ++  + +   P +++
Sbjct: 579 PLLGDIPVLGHLFKSTSTQTQKRNLMVFIKPTIIR 613


>gi|27364325|ref|NP_759853.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|320157717|ref|YP_004190096.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
 gi|27360443|gb|AAO09380.1| general secretion pathway protein D [Vibrio vulnificus CMCP6]
 gi|319933029|gb|ADV87893.1| general secretion pathway protein D [Vibrio vulnificus MO6-24/O]
          Length = 673

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 112/319 (35%), Gaps = 48/319 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            G           V  +    +        +   + + V+  L+I    QV ++  I E+
Sbjct: 295 SGQKGASSQRNDVVIAAHQGTNSLVLTAPPDIMLALQDVITQLDIR-RAQVLIEALIVEM 353

Query: 206 RRDILKQIGFQHS-------ITGSSSGPSKSFA--------------------------- 231
                  +G Q         I  S++G S                               
Sbjct: 354 AEGDGVNLGVQWGNLETGAMIQYSNTGASIGQVMIGLEEAKDTTKTESRWDPDKNQWVDR 413

Query: 232 -----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 D+     +          +    +  ++ A+   +    L+ P++T +    AS
Sbjct: 414 QYTEKGDYSTLASALSKVNGAALSVVMGDWTALISAVSSDSNSNILSSPSITVMDNGEAS 473

Query: 287 FTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           F  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  + 
Sbjct: 474 FIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNIEQEVSNVLG 533

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LF+++
Sbjct: 534 ANGAVDV-RFAKRQLNTSVIVQDGQMLVLGGLIDERALESESKVPLLGDIPVLGHLFKST 592

Query: 402 RFNREETEIFIAATPFLVK 420
               E+  + +   P +++
Sbjct: 593 NTQVEKKNLMVFIKPTIIR 611


>gi|94312323|ref|YP_585533.1| type II and III secretion system protein [Cupriavidus metallidurans
           CH34]
 gi|93356175|gb|ABF10264.1| general secretory pathway component, cryptic [Cupriavidus
           metallidurans CH34]
          Length = 783

 Score =  175 bits (444), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 116/325 (35%), Gaps = 47/325 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236
           A   QV ++  I EV   +  Q+G Q     +S G +  FA    G              
Sbjct: 422 ARRAQVYIESMIVEVSGTLDSQLGIQWQGLINSGGNTVGFAGTNFGTGGQNIINLTAAAA 481

Query: 237 --------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                           V + G  ++  +        +LHAL + T++  L+ P L  +  
Sbjct: 482 LYNQNKTAGLAAISGLVPDVGGLNLGVINKAIGLGALLHALGQNTSVNLLSTPNLITLEN 541

Query: 283 QSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           + A    G      T S +        T   +    D G+ L   P +   G + ++I  
Sbjct: 542 EEAKILIGQNIPITTGSYAQTGSSTSVTPFQTFDRKDVGITLRVRPQISEGGLVKMQIYQ 601

Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E S+   G       P+  VR  +T V +  G  IVL GL++D+     + +PLL  IP 
Sbjct: 602 ESSQVAPGTLTNPQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDNVQKVPLLGDIPY 661

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD---------DHYSVEDDAKAFF 444
           LG+LFR     R +T + +   P++++     D    D          ++   +      
Sbjct: 662 LGSLFRYENKTRSKTNLLVFLRPYVMRTTTATDRLTQDRYDFIRGQQQNFVSPNMVVREL 721

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAI 469
              V        A  V+   Y G +
Sbjct: 722 NTPVLPPADAPTAPFVD-PRYNGPV 745


>gi|158521417|ref|YP_001529287.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
 gi|158510243|gb|ABW67210.1| type II and III secretion system protein [Desulfococcus oleovorans
           Hxd3]
          Length = 538

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 60/271 (22%), Positives = 106/271 (39%), Gaps = 32/271 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFVS 240
               QV ++  I E  +D  +Q+G Q             TG++ GP+     D  G  V+
Sbjct: 259 RPTRQVLIEAHIVETSKDTARQLGIQWGGVAKDKQHSWFTGATEGPAGQTLFDANGVPVA 318

Query: 241 EGGDFSVKGVL------------------DRFSFETVLHALERATAIRTLAEPTLTAISG 282
                +                        +      L ALE    +  L+ P++T +  
Sbjct: 319 ANPTGNWAANFPASLGNTGLSLGYIYQDLGQSLIAAQLTALEEDGKLNILSSPSITTLDN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--RIGLRIQTEVSEPV 340
            +A   SG    ++TV       ++      + L  TP ++     R+ ++   +  +  
Sbjct: 379 SAAVIESGRDVPFQTV--EDNEVNIEWKKAVLSLAVTPHIIDASTLRVKIKTHKDELDWS 436

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             V     P+   + A+T + L  G T V+ GL K    Q + G+PLL +IPILG  FR+
Sbjct: 437 NAVLTDGNPTIITKNAETEMILFDGQTTVIGGLNKQSSSQSQFGVPLLGRIPILGFFFRS 496

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           +  + +  E+ I  TP +++P      +  D
Sbjct: 497 TSRSNDMEEVLIFITPHILEPYTAATGAGAD 527


>gi|109896501|ref|YP_659756.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
 gi|109698782|gb|ABG38702.1| pilus (MSHA type) biogenesis protein MshL [Pseudoalteromonas
           atlantica T6c]
          Length = 550

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 99/249 (39%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L+  I EV      Q G   +   ++SG +    S  A   G  +S          
Sbjct: 279 RQVILEARILEVSLSDGYQQGINWTEVLANSGSTDFQFSTTAGSLGDAISASLGGITSLS 338

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
                F  VL+ L+    ++ L+ P +TAI+ Q A    G    + T  SS         
Sbjct: 339 FVNKDFSGVLNLLQTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSQSTVTAATS 398

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
                  +T    G+ L  TP + + G + L +   V E         +          +
Sbjct: 399 STTPNIELTPFFSGIALDVTPQIDAQGGVLLHVHPSVIETEEQEKVVTLNEEQFVLPLAA 458

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL++  I + +   PLL  IP+LG LF+N +    + E+
Sbjct: 459 SNIRESDTIIHARSGEIVVIGGLMQSIISETESKTPLLGDIPLLGNLFKNRQETETKKEL 518

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 519 VILLRPTVV 527


>gi|2506491|sp|P31701|GSPD_PECCC RecName: Full=General secretion pathway protein D; AltName:
           Full=Pectic enzymes secretion protein outD; Flags:
           Precursor
          Length = 650

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 52/263 (19%), Positives = 101/263 (38%), Gaps = 25/263 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------- 231
           ++V+  L+I    QV ++  IAEV+      +G Q +   +      +            
Sbjct: 323 EQVIAQLDIRRP-QVLVEAIIAEVQDADGMNLGVQWANKNAGVTQFTNTGLPITTMMAGA 381

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          + GG   +     + ++  ++ AL   +    LA P++  +    
Sbjct: 382 DQFRRDGTLGTAATTALGGFNGIAAGFYQGNWGMLMTALSSNSKNDILATPSIVTLDNME 441

Query: 285 ASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           A+F  G +       +T S      +V     G+ L   P +     + L I+ EVS   
Sbjct: 442 ATFNVGQEVPVLAGSQTTSGDNVFQTVERKTVGIKLKVKPQINEGDSVLLEIEQEVSSVA 501

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +        ++  R  +  V + SG T+V+ GLL     +    +PLL  IP+LG L
Sbjct: 502 DAASSSSTNLGATFNTRTVNNAVLVSSGDTVVVGGLLDKSTNESANKVPLLGDIPVLGYL 561

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FR++    ++  + +   P +++
Sbjct: 562 FRSNSTETKKRNLMLFIRPSIIR 584


>gi|118497727|ref|YP_898777.1| Type IV pili secretin component [Francisella tularensis subsp.
           novicida U112]
 gi|194323699|ref|ZP_03057475.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
 gi|82453010|gb|ABB76143.1| PilQ [Francisella novicida]
 gi|118423633|gb|ABK90023.1| Type IV pili secretin component [Francisella novicida U112]
 gi|194322063|gb|EDX19545.1| type IV pilus secretin PilQ family protein, putative [Francisella
           tularensis subsp. novicida FTE]
          Length = 594

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 71/420 (16%), Positives = 154/420 (36%), Gaps = 38/420 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             +  +      +  + ALE  +    +A P L   + Q A F   G+ +    ++++GA
Sbjct: 410 KLMYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
            +V   +  + L  TP +   G I + I    +                P  + R+  T 
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588


>gi|168750719|ref|ZP_02775741.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|168757329|ref|ZP_02782336.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|168763015|ref|ZP_02788022.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|168769207|ref|ZP_02794214.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168769317|ref|ZP_02794324.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776690|ref|ZP_02801697.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783068|ref|ZP_02808075.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789906|ref|ZP_02814913.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|168802552|ref|ZP_02827559.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|195940092|ref|ZP_03085474.1| EtpD [Escherichia coli O157:H7 str. EC4024]
 gi|254667451|ref|YP_003082137.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|261225635|ref|ZP_05939916.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK2000]
 gi|187767920|gb|EDU31764.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015158|gb|EDU53280.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999508|gb|EDU68494.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355641|gb|EDU74060.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361611|gb|EDU80030.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189361663|gb|EDU80082.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366756|gb|EDU85172.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370555|gb|EDU88971.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC869]
 gi|189375476|gb|EDU93892.1| general secretion pathway protein D [Escherichia coli O157:H7 str.
           EC508]
 gi|254595803|gb|ACT75163.1| type II secretion protein [Escherichia coli O157:H7 str. TW14359]
 gi|320187907|gb|EFW62576.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           EC1212]
 gi|326337158|gb|EGD60994.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1125]
 gi|326347656|gb|EGD71374.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           1044]
          Length = 650

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     + V++ L+I    QV ++  IAE++      +G Q     +      S  
Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 377

Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             +  +      +     + ++  +L AL  ++    LA P++ 
Sbjct: 378 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 437

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A+F  G +    + S +T       +V     G+ L   P +     + L I+ 
Sbjct: 438 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 497

Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS   +  +        ++  R     + + +G T+V+ GLL   I+  +  +PLL  I
Sbjct: 498 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 557

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR       +  + +   P +++
Sbjct: 558 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 586


>gi|90412971|ref|ZP_01220969.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
 gi|90325986|gb|EAS42425.1| putative MSHA biogenesis protein MshL [Photobacterium profundum
           3TCK]
          Length = 559

 Score =  175 bits (443), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 78/312 (25%), Positives = 119/312 (38%), Gaps = 35/312 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  RTI  S +A  +    + ++    +     SKK         + Q
Sbjct: 232 QLEKAVQAMIGSGEGRTIVVSPQASLISVRAYPNELREVKEFLGVSKK-------RLKRQ 284

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS------KSFAADFGGKFVSEGGDFSVKG 249
           V L+  I EV      Q G   S   SS G +         AA  GG  +S         
Sbjct: 285 VVLETKIMEVTLSDGYQQGVNWSNITSSIGGTDIIFGRTGPAALPGGDAISSLLGGQTNV 344

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
            +   +FE VL  LE    +  L+ P +TA + Q A    GG   + T  S         
Sbjct: 345 TISDGNFEAVLSFLETQGDLNVLSSPRVTAANNQKAVIKVGGDQYFVTDISGGEVSGDNS 404

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-------- 351
                  +T    G+ L  TP +   G + L +   V E V      D+ +         
Sbjct: 405 TSAPDIELTPFFSGISLDVTPQIDDEGGVLLHVHPTVVEVVNETKDIDLGATFGVYKLPL 464

Query: 352 ---RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++D+ +   SG  +V+ GL+K  I      +P L  IP LG LFRN    + +T
Sbjct: 465 AKSSIRESDSVIFARSGDVVVIGGLMKSAINDQVSKVPFLGDIPGLGHLFRNVNKVQSKT 524

Query: 409 EIFIAATPFLVK 420
           E+ I   P +V 
Sbjct: 525 ELVILLKPTVVD 536


>gi|114045976|ref|YP_736526.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
 gi|113887418|gb|ABI41469.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-7]
          Length = 561

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++      ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    S+ GV         F T++ 
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
            G+ L  TP +   G + L +   V +         + S           +R++DT +  
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|114561562|ref|YP_749075.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
 gi|114332855|gb|ABI70237.1| type IV pilus secretin PilQ [Shewanella frigidimarina NCIMB 400]
          Length = 682

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            ++    + +   +      + V  L+ +      QV ++  +  V+ D+ + +G +  I
Sbjct: 397 SVAVDERTNTLLVKDTAEILENVHRLIEVLDIPIKQVLIEARMVTVKDDVSEDLGIRWGI 456

Query: 220 TGSSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSFET 258
           T        S          +                         F V  + D    + 
Sbjct: 457 TDQQGSKGTSGTIGGATSIANGTIPSIDDRLNVNLPAAASSATSIAFHVAKLADGTVLDL 516

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L ALE+      +A P +T  + +SA    G +  Y   +SS GAT+VT     + L  
Sbjct: 517 ELSALEQENKGEIIASPRITTSNQKSAYIEQGVEIPYVESASS-GATTVTFKKAVLSLRV 575

Query: 319 TPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           TP +    R+ L ++         +    G+  +   ++  T V + +G TIVL G+ + 
Sbjct: 576 TPQITPDDRVILDLEITQDSQGTTVATATGEAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 635

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++      +P+L  IP++G LFRNS    E  E+ I  TP +V
Sbjct: 636 NLISRVSKVPVLGDIPLVGFLFRNSTDTNERQELLIFVTPKIV 678


>gi|294339205|emb|CAZ87559.1| Putative Type IV pilus biogenesis secretin PilQ [Thiomonas sp. 3As]
          Length = 746

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 63/354 (17%), Positives = 116/354 (32%), Gaps = 49/354 (13%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174
             +  A +   L                 V+L G+  +   + R +    T L+    N 
Sbjct: 393 NYQKAATVVAMLTGAAGGVQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452

Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                  S  ++V  L+    +   QV ++  I E      + +G +     ++   +  
Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLNNNLPGTGG 512

Query: 230 FA----------------------------------------ADFGGKFVSEGGDFSVKG 249
                                                                   S+  
Sbjct: 513 NTPGVSVSGDYLGVSQQTGQNNATGATVTDSQFVNLPAFGLAGSLLAGATPSSLGISLFN 572

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                     L A+E     + ++ P +       A+   G +  Y+  +SS GAT+VT 
Sbjct: 573 AAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-GATAVTF 631

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
               + L  TP +   G + +    E+ +   G +   +PS       T V++ +GGT+V
Sbjct: 632 KKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVATQVQVENGGTVV 689

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           L G+     Q   + +PLL  IP+LG LF+N+     + E+ +  TP +V    
Sbjct: 690 LGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTSAD 743


>gi|307825428|ref|ZP_07655647.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
 gi|307733603|gb|EFO04461.1| general secretion pathway protein D [Methylobacter tundripaludum
           SV96]
          Length = 712

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 118/305 (38%), Gaps = 22/305 (7%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V  + + +   +++   +      Q        V+  L++    QV +  TI  V+   
Sbjct: 393 EVANVGEVRIISDVANNSVIVVATPQEYEVIL-PVIKQLDL-LPLQVLIDATIVSVKLTD 450

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHALER 265
             + G Q  +    S  S    A   G   +          +  + +      +L A   
Sbjct: 451 SLKYGIQWFLDHGGSSISSGNGAATLGSIATASAAAFTSGGLTAIYNSGIVNALLSAQAN 510

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------------ATSVTTHDY 312
              +  ++ P+L  ++ Q A    G Q   +T +  +               +S+   D 
Sbjct: 511 KGNVNIISSPSLMVLNNQEAKINVGDQVPIQTGTLGSVVGSGGTTGATTAIQSSIQYKDT 570

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLA 371
           GV L  TP V + G + + I+  VS  V         P+ + ++ +++V +    TIVL 
Sbjct: 571 GVTLEVTPRVNANGMVIMDIKQTVSSAVKTETGVNTSPTIQKKEIESSVAVQDSETIVLG 630

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+ ++      GIP L+++P +G LF N+     + E+ +  TP +VK  + +D     
Sbjct: 631 GLIDNNNSNAIGGIPWLNELPWIGPLFGNTDRENIKNELVVLITPRVVK--SKQDSRLIS 688

Query: 432 DHYSV 436
           D +  
Sbjct: 689 DEFKR 693


>gi|113971816|ref|YP_735609.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
 gi|113886500|gb|ABI40552.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. MR-4]
          Length = 561

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++      ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    S+ GV         F T++ 
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
            G+ L  TP +   G + L +   V +         + S           +R++DT +  
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|56476093|ref|YP_157682.1| general (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
 gi|56312136|emb|CAI06781.1| General (Type II) secretion pathway (GSP) D protein [Aromatoleum
           aromaticum EbN1]
          Length = 771

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/455 (18%), Positives = 164/455 (36%), Gaps = 72/455 (15%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD 73
             L  +       P   +   A + +    +     ++   ++ + +  PV    + V D
Sbjct: 171 APLAEALTGPLSKPVTLQFRDAPLRVVFEALSHAAGLNFVFDRDVRVDTPV---TLFVRD 227

Query: 74  PTKADV------------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
            +  +V             V +  ++ ++     +          + +     L   D  
Sbjct: 228 SSVDEVIKLVAVTQQIERKVLNANSVLIYPATPAK-----QRDYQELVTRSFYLANADAK 282

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
             +  L++ +   ++ ++   + +V+           +AV L+E  L+            
Sbjct: 283 QAQSLLKQLVKSKDMFIDEKLNLLVIKDTP-------QAVRLAERLLAS----------- 324

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------------SITGS 222
                 L++A  + V L+V + EV R  L+++G                      +  G 
Sbjct: 325 ------LDVAEPE-VMLEVEVLEVARSKLRELGLDFPDEIGYGLLRSQQQITQTQTAAGI 377

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S       ++     V       + G +   +    L A         LA P +   + 
Sbjct: 378 VSEVVTLPGSEIAPGVVPRAQWGDLTGYVTNPALTLRLRA--EDGDTNLLANPRIRVKNR 435

Query: 283 QSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           + A    G +    T +S+     + SV+  D G+ L   P V     + +++  EVS  
Sbjct: 436 EKAKIHIGEKLPVFTTTSTANVGVSASVSYLDVGLKLDVEPAVTLDDEVAIKVALEVSNI 495

Query: 340 V---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           V    G +         R A T + L +G T VLAGL+ D+ ++  + +P L  +P++G 
Sbjct: 496 VREVPGPSDSLAYQVGTRSATTVLRLRNGETQVLAGLISDEERRSAQRLPGLGDLPLIGR 555

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           LF + R N  +TEI +  TP +V+ +    L+R D
Sbjct: 556 LFSSERNNASKTEIVLLITPRIVRNIVAPSLARAD 590


>gi|197336466|ref|YP_002157259.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317956|gb|ACH67403.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 678

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
                   + K V+  L+I    QV ++  I E+       +G Q         I  S++
Sbjct: 321 TAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGDGVNLGVQWGNLETGAMIQYSNT 379

Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
           G S                                      +     + GG       + 
Sbjct: 380 GASIGATMVGLEEAKDTTTTTAVYDENGKFVRNETTTEEGSYDALAGALGGVQGAAVSIM 439

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307
              +  ++ A+   +    L+ P++T +    ASF  G +    T S     +     +V
Sbjct: 440 MGDWAALVTAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSSNDNPFQTV 499

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ L   P +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  
Sbjct: 500 DRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQM 558

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +VL GL+ +   + +  +P L  IP+LG LF+++    E+  + +   P +++
Sbjct: 559 LVLGGLIDERALESESKVPFLGDIPVLGYLFKSTSTQVEKKNLMVFIKPTIIR 611


>gi|2853000|gb|AAC38777.1| XqhA [Pseudomonas aeruginosa]
          Length = 713

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAVTLGEIGESLHGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+Q+    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634


>gi|59713081|ref|YP_205857.1| general secretion pathway protein D [Vibrio fischeri ES114]
 gi|59481182|gb|AAW86969.1| general secretion pathway protein D [Vibrio fischeri ES114]
          Length = 673

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 114/315 (36%), Gaps = 48/315 (15%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            + Q+    +  +    +        +   + K V+  L+I    QV ++  I E+    
Sbjct: 295 SSSQNRNDVMISAHVDTNSLVITAPPDVMRAMKDVIAQLDIR-RAQVLIEALIVELAEGD 353

Query: 210 LKQIGFQHS-------ITGSSSGPSKSFA------------------------------- 231
              +G Q         I  S++G S                                   
Sbjct: 354 GVNLGVQWGNLETGTMIQYSNTGASIGATMVGLEEAKDKTTATAVYDENGKFLRNETTTK 413

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              +     + GG       +    ++ ++ A+   +    L+ P++T +    ASF  G
Sbjct: 414 EGSYDALAGALGGVQGAAVSIMMGDWKALVTAVSTDSNSNILSSPSITVMDNGEASFIVG 473

Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            +           ++     +V   + G+ L   P +     + L I+ EVS  +    A
Sbjct: 474 EEVPVLTGSTSGSNNENPFQTVDRKEVGIKLKVVPQINEGDSVRLDIEQEVSNVLGANGA 533

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P L  IP+LG LF+++    
Sbjct: 534 VDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPFLGDIPVLGHLFKSTSTRV 592

Query: 406 EETEIFIAATPFLVK 420
           E+  + +   P +++
Sbjct: 593 EKKNLMVFIKPTIIR 607


>gi|10955268|ref|NP_052609.1| EtpD [Escherichia coli O157:H7 str. Sakai]
 gi|149930769|ref|YP_001294686.1| w0022 [Escherichia coli]
 gi|37695757|gb|AAR00419.1|AF401292_20 w0022 [Escherichia coli]
 gi|2598401|emb|CAA70955.1| etpD [Escherichia coli]
 gi|3337000|dbj|BAA31759.1| Type II secretion pathway related protein [Escherichia coli O157:H7
           str. Sakai]
          Length = 585

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 50/269 (18%), Positives = 100/269 (37%), Gaps = 21/269 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     + V++ L+I    QV ++  IAE++      +G Q     +      S  
Sbjct: 254 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 312

Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             +  +      +     + ++  +L AL  ++    LA P++ 
Sbjct: 313 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 372

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A+F  G +    + S +T       +V     G+ L   P +     + L I+ 
Sbjct: 373 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 432

Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS   +  +        ++  R     + + +G T+V+ GLL   I+  +  +PLL  I
Sbjct: 433 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDI 492

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR       +  + +   P +++
Sbjct: 493 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 521


>gi|332184221|gb|AEE26475.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           3523]
          Length = 596

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 71/423 (16%), Positives = 154/423 (36%), Gaps = 40/423 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                  +      +  + ALE  +    +A P L   + Q A F   G+ +    ++++
Sbjct: 410 TAKLAYTIAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
           GA +V   +  + L  TP +   G I + I    +                P  + R+  
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP 
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588

Query: 418 LVK 420
           +++
Sbjct: 589 IIQ 591


>gi|207725091|ref|YP_002255488.1| gspd-related protein [Ralstonia solanacearum MolK2]
 gi|206590321|emb|CAQ37282.1| gspd-related protein [Ralstonia solanacearum MolK2]
          Length = 754

 Score =  175 bits (443), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/472 (18%), Positives = 161/472 (34%), Gaps = 58/472 (12%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  +  + P   E + A +      + +   ++   +K   ++    V  V + + T A 
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           VV            V     + ++     +             +   +L   D   +  T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +   +I V+   + +V+      IQ +++ V + E                     
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                 E +V L+V I EV+R  L+ +G Q     S +  + S         +       
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
           +   +   +    ++A         LA P +   + + A    G +    T +S+     
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
           A +V   D G+ L   PTV     + +RI  EVS+    V   +         R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558

Query: 421 PVAMRDLSRPDDHYSVEDDAKA---FFFNRVNKIYGPKEASEVEGQNYKGAI 469
           P    +L   +     E   +        R      P         +     
Sbjct: 559 PAQRPNLGSAEFDSGTESSLRLKSSMLHERSEPAPNPVAPGAAPTPSTDATA 610


>gi|317051459|ref|YP_004112575.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
 gi|316946543|gb|ADU66019.1| general secretion pathway protein D [Desulfurispirillum indicum S5]
          Length = 638

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/479 (18%), Positives = 167/479 (34%), Gaps = 84/479 (17%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           L+ T    +   L    P    L  +  ANA +I+     + +   I   L++       
Sbjct: 134 LRNTPAAELIPILRPLVPQYGHLAGVPSANAIIISDHAENVSRIADIVDRLDQ------- 186

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ---------MLNLDI 114
            + + + + D   A V           G+  G    I     G+Q         ++  + 
Sbjct: 187 EESEAIAIVDLQHAWV-----------GQLAGLLEKIATPQGGQQQRSPAAGIRIIADER 235

Query: 115 LIERDIAHLEMTL---RRFIADSNIRVEMVSDTVVL------------------------ 147
                +   +  L   R+ I   +I V+    T+VL                        
Sbjct: 236 SNRLILKGTQKALEEYRQLIDSLDIPVKTTGSTMVLRLSHADATKMAELLKGLVEGRTAS 295

Query: 148 ---HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTI 202
               G       +++    ++  L+         + ++   ++  L++    QV ++  I
Sbjct: 296 ASGSGRDSAPAPAEKFSIQADESLNALVIRAEPATMAEIQSIIAQLDVR-RAQVLIEAVI 354

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-----------------KFVSEGGDF 245
            EV  D L Q+G Q +   +           F                     +S+G   
Sbjct: 355 VEVVGDSLNQLGVQLAARSAGDTLGPIGGTSFSNAGTSLSNILTSIATQTPPTISDGMSL 414

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSS 300
            V           +L AL   T    L+ P++  +  Q AS   G         Y   S 
Sbjct: 415 GVATTSGSVEMGALLTALASVTNANLLSTPSILTLDNQEASILVGQNIPVRTGTYSHDSG 474

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +   T++   D G+VL  TP++     + ++++ E S  +      D      R+  TT+
Sbjct: 475 TNPFTTIQRQDVGIVLKTTPSIYEGNSVRMQVELEASSVL--TEGTDGIITNKREIITTI 532

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +  TIVL GL+KDD+Q++   +PLL  IP+LG LF+  R   E+  + +   P ++
Sbjct: 533 LADNNETIVLGGLIKDDVQEVVSKVPLLGDIPLLGRLFQARRQRVEKRNLLVFLRPTIL 591


>gi|206558684|ref|YP_002229444.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
 gi|198034721|emb|CAR50588.1| putative type IV pilus secretin [Burkholderia cenocepacia J2315]
          Length = 541

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/447 (16%), Positives = 148/447 (33%), Gaps = 57/447 (12%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +  P++   P      A + + +  + G         +    + + +    +  +    A
Sbjct: 78  APGPALEGPPIPLAPPARMSDAAARQPGDA-------DDARRISLNLQGVGLAAAFDAIA 130

Query: 78  DVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRF 130
                +     + G+ V G   + L     ++  +  + +                    
Sbjct: 131 RFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDMHGLAMSRRGNVIWVTPAAEL 186

Query: 131 IADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            A    R +M +    L  +           +Q    L      Q   ++   +++    
Sbjct: 187 AARERERFDMHARAADLEPLASRTFMLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRT 246

Query: 186 NLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           NLL +                      QV ++  I E  +   + +G + ++      PS
Sbjct: 247 NLLFVTDLAPRIVQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPS 306

Query: 228 K-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                           AA   G F +    F++         +  L ALE     + ++ 
Sbjct: 307 AEGTSFTADARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSR 366

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +       A    G +  Y+      G + V      + L   P +   GR+ L +  
Sbjct: 367 PRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL-- 423

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +V++  +G      P+   +   T VE+ +GGT+ + G+ +   +     +PLL KIPIL
Sbjct: 424 DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPIL 483

Query: 395 GALFRNSRFNREETEIFIAATPFLVKP 421
           GALFR+     +  E+ +  TP +V P
Sbjct: 484 GALFRHRAQRDQRNELVVFITPTVVDP 510


>gi|269103980|ref|ZP_06156677.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163878|gb|EEZ42374.1| type IV pilus biogenesis protein PilQ [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 583

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 148/413 (35%), Gaps = 32/413 (7%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
                +      + +    ++ ++  +   V + + D  V  P   D+++ S     L  
Sbjct: 176 FQDVPVRNVLQLVAEYNDFNLVVSDTVQGNVTLRLDD--VPWPQVLDIILQSKG---LDK 230

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +       ++  +R    L       I  +  +   ++D ++     
Sbjct: 231 RVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIADLLLGTKDG 290

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
            ++   + ++ + E   +   ++   +  S ++++  L+I  + QV ++  I  V    +
Sbjct: 291 VSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITALDIPVK-QVQIEARIVTVDEGDI 349

Query: 211 KQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVSEGGDFSVK 248
            ++G +  +   +   +                           + G             
Sbjct: 350 DELGVRWGVVNQNGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQV 409

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             L     +  L AL+  +    ++ P L   + + A++   G  +    ++S+GA SV 
Sbjct: 410 AKLGDILLDLELSALQAESKAEIISSPRLVT-TNKKAAYIEQGTEIPYLEAASSGAVSVD 468

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGG 366
                + L  TP +    ++ L +     +         G+  +   ++  T V + +G 
Sbjct: 469 FKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQVLVNNGE 528

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+VL G+ +  +      +PLL  IP LG LFR+      + E+ I  TP ++
Sbjct: 529 TVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKII 581


>gi|207744652|ref|YP_002261044.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
 gi|206596059|emb|CAQ62986.1| general secretory pathway protein d [Ralstonia solanacearum
           IPO1609]
          Length = 777

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/287 (24%), Positives = 106/287 (36%), Gaps = 44/287 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------- 235
           A   QV ++  I EV  D   Q+G Q  +             +FG               
Sbjct: 401 ARRAQVYIESMIVEVTSDKASQLGIQWMVGAGGPNTYGFGGTNFGSGVGNILNLGVVAAT 460

Query: 236 -------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                              G  VS     +            +L AL    ++  L+ P 
Sbjct: 461 VGSGGIGSTAAQTALGTITGSNVSGLNGGNFGVFNKNTGLGAILSALGSDGSVNVLSTPN 520

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G      T S +        T   +    D G+ L   P +   G +
Sbjct: 521 LITLDNEEAKILIGQNVPITTGSYAQTGSSASVTPFQTFDRKDVGITLRVKPQITEGGLV 580

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            ++I  E S  V G  NA   P+  VR  +T V    G  IVL GLL+D+ Q  ++ +P 
Sbjct: 581 KMQIFQESSAVVNGTQNATQGPTTNVRSIETNVLANDGQVIVLGGLLEDNYQDSEQKVPG 640

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           L  IPILGALFR+    R++T + +   P++++  A    +  D+ Y
Sbjct: 641 LGDIPILGALFRSESKERKKTNLLVFLRPYILR-TAEATGTLSDNRY 686


>gi|323135898|ref|ZP_08070981.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
 gi|322398989|gb|EFY01508.1| general secretion pathway protein D [Methylocystis sp. ATCC 49242]
          Length = 817

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/260 (25%), Positives = 118/260 (45%), Gaps = 18/260 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V+  L++   +QV L+ TIAEV+ +   + G +  +    +    S +A+  G   +  
Sbjct: 510 QVIETLDV-MPNQVFLEATIAEVKLNDTLRFGVRWFMQTHQNLFGFSSSANPAGPLPNTP 568

Query: 243 GDFSVKGVLDRFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              ++ G     +F            +  L+AL   T +  +  P+LT +  + A    G
Sbjct: 569 LGTNLLGANVGANFPGFAYAFRAFNQQVTLNALNAITEVNVIQTPSLTVLDNRQAMLQVG 628

Query: 291 GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            Q   +T+SS         SV   + GV+L  TP +   GRI L ++ EVS        G
Sbjct: 629 DQIPVQTLSSVSAIGNQFNSVNYTNTGVILAITPHISESGRIMLELEQEVSNVDPNTPPG 688

Query: 347 DM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + P+ + R+  T V +    +++L GL+KD   +    IP+   +P+ G LF++     
Sbjct: 689 SITPTIQQRRVKTQVVVNDSESLMLGGLVKDQRGRAATQIPVAGDVPVFGNLFKDKGDAV 748

Query: 406 EETEIFIAATPFLVKPVAMR 425
           ++TE+ I  TP +V+ +   
Sbjct: 749 DKTELVIMITPHVVRSLDEG 768


>gi|153840376|ref|ZP_01993043.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
 gi|149745960|gb|EDM57090.1| general secretion pathway protein D [Vibrio parahaemolyticus
           AQ3810]
          Length = 552

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 153/454 (33%), Gaps = 84/454 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDV-LVSDPTKADVVVHSPRT---MYLFGKNVGQAN----- 98
            I +   +  ++ ++   ++ V    D     V + +      + +        N     
Sbjct: 39  NIILITGRAAVVNRLAEIIKRVDQAGDKEIELVELRNASAAEMVRIVEALNKTTNQKSTP 98

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTV- 145
                 ++        +++ D  +   +  L   L   +A         ++     D V 
Sbjct: 99  EFLEPKIVADERTNSILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKYAKAEDLVD 158

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---------------VMNLLNI 190
           VL G+   +Q  ++A +   +   +      A+ ++                 V++ L+I
Sbjct: 159 VLKGVSDNLQAEKQAGQKGASSAQRGEVVIAAHEATNSLVLTAPPDIMMALQDVISQLDI 218

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------------- 219
               QV ++  I E+       +G Q                                  
Sbjct: 219 R-RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGAPIGQVMVGLEEAKDVTK 277

Query: 220 --------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                   T        +   D+     + GG       +    +  ++ A+   +    
Sbjct: 278 TESYWNSDTNKWENRQYTEEGDYSTLASALGGVNGAAMSIVMGDWTALISAVASDSNSNI 337

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           L+ P++T +    ASF  G +    T      ++     +V   + G+ L   P +    
Sbjct: 338 LSSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGD 397

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +P
Sbjct: 398 SVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVP 456

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL  IP+LG LF+++    E+  + +   P +++
Sbjct: 457 LLGDIPVLGHLFKSTSTQTEKRNLMVFIKPTIIR 490


>gi|88705191|ref|ZP_01102902.1| GSP-D family Protein [Congregibacter litoralis KT71]
 gi|88700281|gb|EAQ97389.1| GSP-D family Protein [Congregibacter litoralis KT71]
          Length = 728

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/291 (20%), Positives = 113/291 (38%), Gaps = 36/291 (12%)

Query: 163 LSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           + E   +     + +   ++  ++++ ++I    QV ++  I   + D+ K++G Q    
Sbjct: 434 IVEARTNSLIVTETSAKLAEIRELIDRVDIPIR-QVMIESRIVIAQSDLEKELGIQWGGG 492

Query: 221 GSSSGPSKSFAADFG-----------------------------GKFVSEGGDFSVKGVL 251
                 + +  +  G                                 S    F+V    
Sbjct: 493 YLEPDANGNILSVTGDATNAVNLNNSVINGTQPDLSYPGALLVDLGSGSATSGFAVGFTS 552

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                   L ALE A     +++P +     Q A+  SG +  ++  ++S GAT+V   +
Sbjct: 553 SELFLTAELSALEAAGKSEVVSQPKVITGDKQPATIKSGTEIPFQQAAAS-GATAVQFKE 611

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             + L  TP +    RI L +      V + V     G +P+    +  T V + +G T+
Sbjct: 612 AVLKLDVTPNITPDDRILLDLVINQDSVGDLVPSGQGGLIPAIDTTQLTTQVLVGNGETV 671

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ + +  +    +P    +P +GALFRN    R +TE  I  TP ++
Sbjct: 672 VLGGVFRTENLETTSKVPFFGDLPYVGALFRNESSQRTKTETLIFITPRIL 722


>gi|262370143|ref|ZP_06063470.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
 gi|262315182|gb|EEY96222.1| conserved hypothetical protein [Acinetobacter johnsonii SH046]
          Length = 785

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 101/268 (37%), Gaps = 31/268 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+     QV ++ TI EV  +   Q+G Q ++   SSG       + G    S 
Sbjct: 372 ESAIQQLDTR-RQQVLIEATILEVEGNDADQLGVQWAMGDLSSGVGIINFDNIGSSLKSI 430

Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
             ++                              R  +  ++ AL+  T    L+ P++ 
Sbjct: 431 AANYLTGGGAGAASAIGAGGSLILGDYKEGSDGSRQLYGAMIQALKSNTKSNLLSTPSIV 490

Query: 279 AISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +  + A    G    + T S S          T++   D GV L   P +   G I L 
Sbjct: 491 TMDNEEAYIVVGENVPFVTGSVSTTSSGTANPYTTIERKDVGVTLKVVPHIGEGGTIRLE 550

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+ EVS+               R   T+V    G TIVL GL+ D+    ++ IP L  I
Sbjct: 551 IEQEVSDVKANKGQAQDLVTSKRAIKTSVLAEHGNTIVLGGLISDNTSYSRQSIPGLGAI 610

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P LG LFR+   + ++  + +   P +V
Sbjct: 611 PGLGRLFRSDGKSDQKRNLLVFIHPTIV 638


>gi|238797288|ref|ZP_04640789.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
 gi|238718925|gb|EEQ10740.1| Protein transporter HofQ [Yersinia mollaretii ATCC 43969]
          Length = 406

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 137/380 (36%), Gaps = 31/380 (8%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V     AD    +   + +     G  ++ L+    +Q L + + +    A  E  + 
Sbjct: 31  VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALAIILRMGHLKAEREGAVM 87

Query: 129 RFIADSNIRVEMV-SDTVVLHGMVRT---IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
               + +I      ++       + +         A  ++E+       +   +  + K 
Sbjct: 88  MVFTEQDIEERQQRAEQKAAPDSMSSLTLALQHADAEHVAESLEEGGLLSPLGSVVADKR 147

Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            N L I                      Q+ L   I  + R+ L+++G +  +       
Sbjct: 148 TNTLLIRDTPASLAILKGWLAEMDLPLQQIQLAAHIVTMSRENLQELGVRWGMGEPPHTT 207

Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           S     F  +      +    F+V  +  R     +  ALE+   +  +A P L A   Q
Sbjct: 208 SLRVNDFNVNLPLANSAVSAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHQQ 266

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +AS   G    Y       GA S+   +  + +  TP +L  G+I L ++   + P + +
Sbjct: 267 TASIKQGSDIPYTVSRGEKGAASIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 326

Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                +      ++  T + +  G TIVL G+ +    Q    +P+L+ IP LGALF+  
Sbjct: 327 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNSQAVNKVPILADIPWLGALFKQD 386

Query: 402 RFNREETEIFIAATPFLVKP 421
              +   E+ I  TP L+  
Sbjct: 387 AQQQNRRELVIFITPRLISA 406


>gi|304412646|ref|ZP_07394250.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|307307256|ref|ZP_07586993.1| general secretion pathway protein D [Shewanella baltica BA175]
 gi|304348990|gb|EFM13404.1| general secretion pathway protein D [Shewanella baltica OS183]
 gi|306910311|gb|EFN40743.1| general secretion pathway protein D [Shewanella baltica BA175]
          Length = 704

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 45/303 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373

Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDF--------------------- 245
            G       +     G             G  V  G +                      
Sbjct: 374 KGGLGTQFNNLGPTIGEIGAGVWAAQPIEGDLVCSGTNLDNCKRNPDKQGDVTLLAQALG 433

Query: 246 ---SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
               +   +    F  ++ A+   T    LA P++T +  Q ASF  G +         +
Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            S+S    +V   + GV L   P +     + L I+ EVS            S+  R+  
Sbjct: 494 SSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV   SG  +VL GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I   P 
Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKPT 611

Query: 418 LVK 420
           +++
Sbjct: 612 IIR 614


>gi|262166741|ref|ZP_06034478.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
 gi|262026457|gb|EEY45125.1| type II secretory pathway component PulD [Vibrio mimicus VM223]
          Length = 653

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 115/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 272 KGTGQQTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 330

Query: 205 VRRDILKQIGFQHS-------ITGSSSGPSKSFA-------------------------- 231
           +       +G Q         I   ++G S                              
Sbjct: 331 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVLIGLEEAKDTTEKRPIRDSNTGAIKY 390

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                   D+     +  G       +    +  +++A+   +    L+ P++T +    
Sbjct: 391 YEETTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSKSNILSSPSITVMDNGE 450

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 451 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 510

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 511 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 569

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 570 STSSQVEKKNLMVFIKPTIIR 590


>gi|117922096|ref|YP_871288.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
 gi|117614428|gb|ABK49882.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. ANA-3]
          Length = 561

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 112/297 (37%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++      ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 241 TLSAIIGDTGGGRQVVVTPQAGLVTIRAYPNELRQVRAFLNSAESHLQRQVILEAKILEV 300

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    S+ GV         F T++ 
Sbjct: 301 TLSDGYQQGIQWDNVLGHVGNTNINFGTSAGAGLSDKITASLGGVTSLSIKGSDFNTMIS 360

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 361 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFF 420

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVEL 362
            G+ L  TP +   G + L +   V +         + S           +R++DT +  
Sbjct: 421 SGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSSESLELPLAQSEIRESDTVIRA 480

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +V+ GL+K +  ++   +PLL  IP++G LF+N    +++TE+ I   P +V
Sbjct: 481 ASGDVVVIGGLMKSENTEVVSQVPLLGDIPLVGELFKNRSKQKKKTELIIMLKPTVV 537


>gi|258625707|ref|ZP_05720586.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
 gi|258581945|gb|EEW06815.1| Fimbrial assembly protein PilQ [Vibrio mimicus VM603]
          Length = 571

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 59/309 (19%), Positives = 116/309 (37%), Gaps = 28/309 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G V  + +         T            +  ++++  L+I  + QV
Sbjct: 263 KASDIAAMIGGEGNVNMLSERGTISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 321

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--------------------- 235
            ++  I  V+   L ++G +  +  ++   S     +                       
Sbjct: 322 QIEARIVTVKEGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVN 381

Query: 236 ---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+  +    ++ P L   + Q A    G +
Sbjct: 382 LASASANASSIAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 441

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
             Y    SS+GAT+V+     + L  TP +    R+ L +          +    G+  S
Sbjct: 442 IPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 500

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+
Sbjct: 501 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 560

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 561 LIFVTPKVV 569


>gi|206891200|ref|YP_002248265.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743138|gb|ACI22195.1| PilQ [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 663

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 60/352 (17%), Positives = 122/352 (34%), Gaps = 36/352 (10%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS-----NIRVEMVSDTVVLHGMVRTIQDSQR 159
           +G  +    + I ++   LE   +     +      I V   +    + G +   +    
Sbjct: 310 EGNIIRIAPVKIFQEEKKLEAETKDLFKKAEDEQIRIFVLKYASVDKVKGTIEAAKILSP 369

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQH 217
              +S    +++   +   S    +  L+        Q+ L+  I E+     K +GF+ 
Sbjct: 370 KGTISTDERTRTVIIRDIPSVLGHIARLVADLDKPTRQILLEARIIEMSSSFSKSLGFEW 429

Query: 218 SITGSSSGPSKS-------------------------FAADFGGKFVSEGGDFSVKGVLD 252
            I     G   +                               G   S    F++  +  
Sbjct: 430 GIQWYPPGTRTTIVGSVGAAAGSSASSVPGGTAPLAINLPASTGNVTSPTTAFTIGYLNP 489

Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             +   +  + AL+++   + ++ P +  +  Q A    G    Y      +G  S    
Sbjct: 490 SQTIALDLRISALQQSGKGKVISNPKVITLDNQKAKIVQGASIPYGEKDVQSGQISTKFK 549

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTI 368
           D  + +  TP ++    + L +     + V  VN G +  P     + +T V L  G T+
Sbjct: 550 DVAITVEATPHLIDDKSMLLDVSVIKEDLVEFVNIGGVYAPRTTKIEGNTKVSLKDGETL 609

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           V+ G+ K      +  +P L  +P+LG LF++   +    E+ I  TP ++K
Sbjct: 610 VIGGIYKKTDSLTESKVPGLGDVPLLGELFKSRGRDETLYEVMIFVTPRILK 661


>gi|296314608|ref|ZP_06864549.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
 gi|296838653|gb|EFH22591.1| type IV pilus secretin PilQ [Neisseria polysaccharea ATCC 43768]
          Length = 505

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 103/260 (39%), Gaps = 23/260 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAA 232
           K+++ L++    QV ++  I E      + +G +   TG             G +  F  
Sbjct: 239 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 297

Query: 233 D---------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +     S+   +   +    L A E  +  +TLA P +   + +
Sbjct: 298 GDGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRK 357

Query: 284 SASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   SG +  Y+  SSS  ++S T       + L  TP +   G+I + ++     PV 
Sbjct: 358 EAKIESGTEIPYQDTSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVD 417

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             V        + +  +T   + +GGT+++ G+ +++       +PLL  IP++G LF+ 
Sbjct: 418 CTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKT 477

Query: 401 SRFNREETEIFIAATPFLVK 420
              +    E+ I  TP ++ 
Sbjct: 478 RGKSTNRRELLIFITPRIMD 497


>gi|296159579|ref|ZP_06842403.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
 gi|295890287|gb|EFG70081.1| type IV pilus secretin PilQ [Burkholderia sp. Ch1-1]
          Length = 585

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 75/433 (17%), Positives = 144/433 (33%), Gaps = 43/433 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P V   P  + +               K +S+   +  +  V              A  
Sbjct: 162 GPPVPLPPLARLSGEPHGAADPSLAPDDKPLSLNFQRAELGAVLNAFSR-FTGLNIVASE 220

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+  +G  M  + +++    IA L    R+         
Sbjct: 221 RVRGAVSLRLDKVPWRIAFDTLLDVNGLAMERHGNVIWVAPIADLAARERQRF------- 273

Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--- 190
           E  +    L  +     +     ++    L     +Q   ++   +++    NLL +   
Sbjct: 274 EAHARAADLEPLASRTFELHYAHAEDVRRLLTGSGAQRVLSKRGAATADPRTNLLFVTDL 333

Query: 191 ---------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                              QV ++  I E      + +G + S+  S++  +     D  
Sbjct: 334 EARLAQIAALLTSVDRPTRQVLIEARIVEGEHGFSRNLGVKLSMAASNADGTAKGLTDAA 393

Query: 236 --------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                     F +     ++            L ALE       ++ P +       A  
Sbjct: 394 YDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAQGRGEIVSSPRVVTADRMKAVV 453

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P ++  GR+ L +  +V++  +G     
Sbjct: 454 EQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDA 510

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+  GGT+ + G+   D +     +PLL KIP+LGALFR+       
Sbjct: 511 GPAINTKHVQTRVEVEDGGTVSIGGIYATDDRDDVTQVPLLGKIPVLGALFRHRAHRDRR 570

Query: 408 TEIFIAATPFLVK 420
           +E+ +  TP +V+
Sbjct: 571 SELAVFITPRVVQ 583


>gi|288942699|ref|YP_003444939.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
 gi|288898071|gb|ADC63907.1| general secretion pathway protein D [Allochromatium vinosum DSM
           180]
          Length = 733

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 122/298 (40%), Gaps = 17/298 (5%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211
             +   +V +    ++ S   + +    KK+++ L        QV ++ TI E+      
Sbjct: 429 ELEMSSSVNIVADAVNNSLLVRASPRDYKKILDALKQLDILPLQVLVEATIVEITLSGSL 488

Query: 212 QIGFQHSITGSSSGP------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           + G Q  + G  +          +F         +    F+   V +  + +  L AL  
Sbjct: 489 KYGVQWELFGPGADGKSFASLDGTFDDAETSGIGTMFPGFNWAMVSNPDTIKATLSALAG 548

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFT 319
              +  L+ P++  +  Q+A    G +    T      +T+      ++  D GV+L   
Sbjct: 549 DNLLNVLSSPSVMVMDNQTAKIQVGREVPIATSKQDGTSTTDRTYTTISYKDTGVILTVK 608

Query: 320 PTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P V   G + L I+ EVS       +  + PS++ R   ++V + S   +VL GL++D  
Sbjct: 609 PRVTPGGLVQLEIEQEVSTVFEENASGLNSPSFKKRTITSSVAVRSNQAVVLGGLIEDTR 668

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
              K+GIP L  +P++G LF  +  +   TE+ +  TP ++     +D+    + +  
Sbjct: 669 SDGKQGIPGLYSLPVVGGLFGETSKSSTRTELVVVLTPKVI--ANDQDIESVTEDFRQ 724


>gi|218782642|ref|YP_002433960.1| type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
 gi|218764026|gb|ACL06492.1| Type II and III secretion system protein [Desulfatibacillum
           alkenivorans AK-01]
          Length = 566

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 68/285 (23%), Positives = 116/285 (40%), Gaps = 44/285 (15%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------GSSSGP 226
           ++N L+     QV +K  I E  RD  + +G Q                     G +SG 
Sbjct: 268 LINKLD-RPPYQVHIKANIVETTRDTARDLGVQWGWMYGRYDSLGNDTDFWLTPGGNSGS 326

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------------ETVLHA 262
           + S  A   G + +  G   V G  +  +F                        E  L A
Sbjct: 327 AASRDAPLTGGYTAGTGSKGVSGQGNGINFPVDFEDAMGATMGLMFGKVGSNILEVQLSA 386

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L  A  I  L+ P++T +  Q+AS  +G +  Y    +  G   V   D  ++L  TP V
Sbjct: 387 LADAGKINILSTPSITTLDNQTASTENGTEVPYV-TINEDGDREVKFKDATLMLEITPHV 445

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +  G++ +++  +  E  +  N    P    ++ +T++ + +G T+V++GL K    +  
Sbjct: 446 IDEGQMKMKVSIKKDEVDLSRNVDGNPFILKKRTETSLIVRNGETVVISGLSKTRNTEGD 505

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            GIP L  IP LG LF++   +    E+ I  TP ++ P     +
Sbjct: 506 TGIPWLKDIPGLGYLFKSESKSEAMEEVLIFLTPTVL-PKPGEAM 549


>gi|332163311|ref|YP_004299888.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325667541|gb|ADZ44185.1| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330861918|emb|CBX72088.1| protein transport protein hofQ [Yersinia enterocolitica W22703]
          Length = 439

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%)

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108
           NK + L+       V++     AD    +     +   ++G  N+ L             
Sbjct: 50  NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 102

Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           +L +  L       +      + +  R +      V      + L       ++   ++ 
Sbjct: 103 VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 162

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204
           L+E        +   +    K  N L I                      QV L   I  
Sbjct: 163 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 218

Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + R+ L+++G +  +  +    S    +F  +      +    F+V  +  R     +  
Sbjct: 219 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 277

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE+   I  +A P L     Q+AS   G    Y       GAT++   +  + +  TP 
Sbjct: 278 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 337

Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +L  G+I L ++   + P + +     +      ++  T + +  G TIVL G+ +    
Sbjct: 338 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 397

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                +P+L+ IP LG LF+     +   E+ I  TP L+  
Sbjct: 398 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 439


>gi|255021644|ref|ZP_05293686.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
 gi|254968904|gb|EET26424.1| Type IV pilus biogenesis protein PilQ [Acidithiobacillus caldus
           ATCC 51756]
          Length = 772

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/292 (18%), Positives = 104/292 (35%), Gaps = 50/292 (17%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------------- 236
               QV ++  I +V  +  + +G Q   T +S+G          G              
Sbjct: 479 RPVPQVLIEARIVQVTTNAAQSLGIQWGGTYTSNGGGGVINLSGTGASQYTSSQGGSYPI 538

Query: 237 -----------------------------------KFVSEGGDFSVKGVLDRFSFETVLH 261
                                                      F++            L 
Sbjct: 539 GATSGASGGTSTGSGIGVPAVVNLPAYAPAGSALTGLNPASLGFALGTAAGNRILNLQLQ 598

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           AL+ +   + ++ P +     + A    G +  Y+  +SS GATSV+     + L  TP 
Sbjct: 599 ALQASNQAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATSVSFKKAELSLDVTPH 657

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +   G++ L +  + ++P              ++  T + + +G T+V+ G+  D     
Sbjct: 658 IAPNGKVTLDVDAKNNQPNYAQTTPSGVPINTQEVKTKLLVNNGQTVVIGGIYTDSKSHY 717

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
             G+P+L  IP+LG LF++  +N  ++E+ +  TP +V   +  DL+  D  
Sbjct: 718 DTGVPVLKDIPLLGWLFKSKTYNDSQSELLVFLTPKVVGGQSEDDLAGEDSG 769


>gi|88858853|ref|ZP_01133494.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
 gi|88819079|gb|EAR28893.1| general (Type II) secretion pathway (GSP) D protein
           [Pseudoalteromonas tunicata D2]
          Length = 685

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 62/244 (25%), Positives = 106/244 (43%), Gaps = 15/244 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L+I    Q+ L+V IAEV      + G + +    + G S   A           
Sbjct: 425 PLVKRLDI-LPKQIMLEVIIAEVSLTNEFKQGVEFAFKNGNYGTSTEKAF-------MGD 476

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G   +  +L     + +++ L+  + +  L+ P+L    G +A+   G        ++S 
Sbjct: 477 GFGGLSYLLQGTQGKLIVNLLQTNSLVNILSRPSLVVRDGVNATINVGTDIPIVGETASD 536

Query: 303 G------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRK 355
                   T +     GV L  TPTV + G + + I+ ++S +   G      PS   R 
Sbjct: 537 PINGDRQTTKIEYRKTGVELAVTPTVNAQGIVLMEIKQKISNQVESGSTVSGNPSVFERT 596

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T V   SG TI+L GL+ ++       +P  S IPILG LFR    + ++TE+ I  T
Sbjct: 597 INTEVVAESGQTIILGGLISENKSTKASRVPFFSGIPILGNLFRADTESGDKTELVILVT 656

Query: 416 PFLV 419
           P ++
Sbjct: 657 PRVI 660


>gi|90413595|ref|ZP_01221585.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
 gi|90325368|gb|EAS41857.1| putative fimbrial assembly protein [Photobacterium profundum 3TCK]
          Length = 565

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 54/260 (20%), Positives = 101/260 (38%), Gaps = 26/260 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238
           +++ L+I  + QV ++  I  +    + ++G +  +     +     S  ++ G      
Sbjct: 306 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGSVGLLK 364

Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                        +     +  L AL+  +    ++ P L   +
Sbjct: 365 DDVSVDDFLNVNLAAQKAGASSIAFQIAKVGDILLDLELSALQSESKAEIISSPRLVTTN 424

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            Q+A    G +  Y    SS+GA S+      + L  TP +    ++ L +     EP  
Sbjct: 425 KQTAYIEQGTEIPYLEA-SSSGAVSIDFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 483

Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 G+  S   ++  T V + +G TIVL G+ +  + +    +PLL  +P LGALFR
Sbjct: 484 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQMNKSVSKVPLLGDLPYLGALFR 543

Query: 400 NSRFNREETEIFIAATPFLV 419
           +S     + E+ I  TP +V
Sbjct: 544 HSLEEMGKRELLIFITPKIV 563


>gi|254448307|ref|ZP_05061769.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
 gi|198262174|gb|EDY86457.1| general secretion pathway protein D [gamma proteobacterium
           HTCC5015]
          Length = 694

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 110/300 (36%), Gaps = 31/300 (10%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V + ++         T          A  + + V+  L+I    QV ++  I EV    
Sbjct: 314 TVSSDKEVD-IQADPGTNSLIITAAPDALRNIESVVRQLDIR-RAQVHVEAIIVEVSDTA 371

Query: 210 LKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDFSVK 248
            +++GF +     +                     +G + +   D  G  V  G      
Sbjct: 372 ARELGFSYLFANENGFDNETNPVGGALLGGGGDVINGIAAASTGDGSGASVPNGFTVGFG 431

Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
              +  + F  +L A+   T    L+ P++  +  + A    G    + T S +      
Sbjct: 432 DRDNSGNVFAGILRAVASDTEANLLSTPSIVTLDNEEAEIVVGQNVPFVTGSYTTASSGA 491

Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   D GV L  TP +     I L I+ E S  V    A        R+  T+V
Sbjct: 492 NNPFQTVERQDVGVTLKITPQINEGDVIRLDIEQEASSVVESSVASGQLITNKREIKTSV 551

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  +VL GL+ D  ++    +PLL  IP+LG LF+    + ++  + +   P +++
Sbjct: 552 MIEDGQMLVLGGLIDDQTRKSLFKVPLLGDIPLLGRLFQYRTNSNDKRNLMVFLHPKILR 611


>gi|162419434|ref|YP_001608044.1| putative outer membrane porin HofQ [Yersinia pestis Angola]
 gi|165936209|ref|ZP_02224778.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166213214|ref|ZP_02239249.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167399124|ref|ZP_02304648.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167418934|ref|ZP_02310687.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167425621|ref|ZP_02317374.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|167470614|ref|ZP_02335318.1| protein transporter HofQ [Yersinia pestis FV-1]
 gi|229836369|ref|ZP_04456536.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|229840006|ref|ZP_04460165.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229842087|ref|ZP_04462242.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229904612|ref|ZP_04519723.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|162352249|gb|ABX86197.1| protein transporter HofQ [Yersinia pestis Angola]
 gi|165915823|gb|EDR34431.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166205512|gb|EDR49992.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166962928|gb|EDR58949.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167051628|gb|EDR63036.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167055311|gb|EDR65105.1| protein transporter HofQ [Yersinia pestis biovar Mediaevalis str.
           K1973002]
 gi|229678730|gb|EEO74835.1| predicted fimbrial transporter [Yersinia pestis Nepal516]
 gi|229690397|gb|EEO82451.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696372|gb|EEO86419.1| predicted fimbrial transporter [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229706437|gb|EEO92444.1| predicted fimbrial transporter [Yersinia pestis Pestoides A]
 gi|320013284|gb|ADV96855.1| putative fimbrial transporter [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 500

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500


>gi|260773652|ref|ZP_05882568.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
 gi|260612791|gb|EEX37994.1| type II secretory pathway component PulD [Vibrio metschnikovii CIP
           69.14]
          Length = 536

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 117/311 (37%), Gaps = 34/311 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R        ++ +++ ++  + QV
Sbjct: 208 QLESTIGRLIGSGSGQSVMVTPQASVITVRAYPDEIREV------RQFLDMSHLRIQRQV 261

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL----- 251
            L+  I EV  +   Q G   S T SS+G             VS        G L     
Sbjct: 262 ILEAKILEVTLNDGFQQGINWSKTFSSNGNDYQLGQGVISNPVSSLPGMDAIGTLLGGQT 321

Query: 252 ----DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
                  SF+ VL  +     +  L+ P +TA + Q A    G    Y T  +S   T  
Sbjct: 322 NLVVKSGSFDAVLSFMSTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLTSEVGTGD 381

Query: 306 --------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------M 348
                    +T    G+ L  TP +   G + L +   V E      +           +
Sbjct: 382 NANVAPNIQLTPFFSGISLDVTPQIDDDGYVFLHVHPSVIEVEEQKKSVQFNDRIITLPL 441

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++D+ +    G  +V+ GL+K +       +P    IP+LG LFR +    ++T
Sbjct: 442 ARSSIRESDSVIRAQDGDVVVIGGLMKSNTMNQTSKVPFFGDIPLLGHLFRQTSNVTQKT 501

Query: 409 EIFIAATPFLV 419
           E+ I   P +V
Sbjct: 502 ELVILLKPTVV 512


>gi|224826467|ref|ZP_03699569.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224601568|gb|EEG07749.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 659

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/444 (18%), Positives = 153/444 (34%), Gaps = 72/444 (16%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV- 80
           S    P   E   A +      I +   I+   +K +   +      + V + T  D + 
Sbjct: 169 SALSRPITLEFRDAALKAVFEVISRTSGINFVFDKDVRPDLK---ATIFVRNSTIEDAIQ 225

Query: 81  -----------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
                      V +  T+ ++  N  +          + ++    L   +       +R 
Sbjct: 226 LLLVTNQLDRRVLNDNTIMVYPNNPAK-----QKDYQELVIKNFYLANAEAKDTANLIRA 280

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +   ++ V+   + VV+            AV+++E  ++     +              
Sbjct: 281 LLKTRDVFVDDKRNLVVMRDTP-------EAVKVAERLIASQDLAEPEA----------- 322

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------SSGPSKSFAADFG 235
                   L V + EV R  L+ +G                       + P+        
Sbjct: 323 -------ILDVEVVEVNRARLQSLGIDWPSQVGYGLLTGGTSTQTGTVTNPTTGAVTPVV 375

Query: 236 GKFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              V+      V  + +          +   VLH   + T    LA P +   + + A  
Sbjct: 376 TPGVAATVASGVINLRNNPLGLTTFIANPALVLHLQAQDTDANVLANPRIRVKNHEKAKI 435

Query: 288 TSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV- 343
             G +        V ++  A SV+  D GV L   P++     + + +  EVS  V  V 
Sbjct: 436 HIGDKVPVFTSTAVVNAGIAQSVSYLDVGVKLEVKPSIGLDDDVTIDVGLEVSSIVKQVD 495

Query: 344 -NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                      R ADTT+ L  G T VLAGL++D+ ++    IP L  +PI+G LF ++ 
Sbjct: 496 FGTSTAYQIGSRAADTTLRLRDGETQVLAGLIQDEDRRSITKIPGLGDLPIVGRLFSSNN 555

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
            +R ++EI +  TP +V  + + D
Sbjct: 556 DSRSKSEIVLLITPHIVHNLDLPD 579


>gi|313669028|ref|YP_004049312.1| pilus secretin [Neisseria lactamica ST-640]
 gi|313006490|emb|CBN87953.1| pilus secretin [Neisseria lactamica 020-06]
          Length = 726

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 103/261 (39%), Gaps = 24/261 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------S 222
           K+++ L++    QV ++  I E      + +G +   TG                     
Sbjct: 459 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEG 517

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             G   S          +     S+   +   +    L A E  +  +TLA P +   + 
Sbjct: 518 GEGGKWSAQTSINLPVAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNR 577

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + A   SG +  ++  SSS G++S T       + L  TP +   G+I + ++     PV
Sbjct: 578 KEAKIESGTEIPFQDTSSSGGSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPV 637

Query: 341 I-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              V        + +  +T   + +GGT+++ G+ +++       IPLL  IP++G LF+
Sbjct: 638 DCTVKDETTKCIQTKNLNTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDIPVIGNLFK 697

Query: 400 NSRFNREETEIFIAATPFLVK 420
               +    E+ I  TP ++ 
Sbjct: 698 TRGKSTNRRELLIFITPRIMD 718


>gi|209756638|gb|ACI76631.1| putative transport protein [Escherichia coli]
 gi|320645172|gb|EFX14188.1| outer membrane porin HofQ [Escherichia coli O157:H- str. 493-89]
 gi|320650483|gb|EFX18949.1| outer membrane porin HofQ [Escherichia coli O157:H- str. H 2687]
          Length = 412

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 83/425 (19%), Positives = 153/425 (36%), Gaps = 29/425 (6%)

Query: 8   FFTMMSIFLFSSNPSVAKLPP---IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
               ++  L    P V    P       +   +      + + +K+++ +        P 
Sbjct: 1   MKQWIAALLLMLIPGVQAAKPQKVTLMVDDVPVAQVLQALAEQEKLNLVV-------SPD 53

Query: 65  DVQDVLVSDPTK-----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
               V +             VV S     L  +  G   + +           D +  ++
Sbjct: 54  VSGTVSLHLTDVPWKQALQTVVKSAG---LITRQEGNI-LSV----HSIAWQNDNIARQE 105

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                      + + NI ++      +     + +           T       N+ A S
Sbjct: 106 AEQARAQANLPLENRNITLQYADAGELAKAGEKLLSAKGSMTVDKRTNRLLLRDNKTALS 165

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + ++ +  +++    QV L   I  +    L+++G + ++  +            G    
Sbjct: 166 ALEQWVAQMDLP-VGQVELSAHIVTINEKSLRELGVKWTLADAQHAGGVGQVTTLGSDLS 224

Query: 240 SEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                  V    G ++       L ALE+   +  +A P L A   Q AS   G +  Y+
Sbjct: 225 VATATTHVGFNIGRINGRLLALELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQ 284

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVR 354
             S  +GATSV   +  + +  TPTVL  GRI L+  I   V   V+    G++ +   +
Sbjct: 285 VSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQ 344

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T VE+ SG T+ L G+     +  ++ +PLL  IP  G LFR+     E  E+ +  
Sbjct: 345 EIETQVEVKSGETLALGGIFTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFI 404

Query: 415 TPFLV 419
           TP LV
Sbjct: 405 TPRLV 409


>gi|300696689|ref|YP_003747350.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
 gi|299073413|emb|CBJ52927.1| secretion type II protein related to gspD (secretin) protein
           [Ralstonia solanacearum CFBP2957]
          Length = 754

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 155/427 (36%), Gaps = 55/427 (12%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  +  + P   E + A +      + +   ++   +K   ++    V  V + + T A 
Sbjct: 176 ALSAAFRKPISLEFHDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAS 232

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           VV            V     + ++     +             +   +L   D   +  T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNAILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +   +I V+   + +V+      I+ +++ V + E                     
Sbjct: 288 LKTILKTRDIVVDEKRNMIVMRDTPDAIEAAEKLVAVHEM-------------------- 327

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                 E +V L+V I EV+R  L+ +G Q     S +  + S         +       
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
           +   +   +    ++A         LA P +   + + A    G +    T +S+     
Sbjct: 383 IGATVSPLNIN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
           A +V   D G+ L   PTV     + +RI  EVS+    V   +         R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558

Query: 421 PVAMRDL 427
           P    +L
Sbjct: 559 PAQRPNL 565


>gi|257485358|ref|ZP_05639399.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 341

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 24  GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 82

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 83  GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 142

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G        S +T  ++      V     GV
Sbjct: 143 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 202

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS         +A   P    R   T V   SG T++L 
Sbjct: 203 ILDVVPRINPGGLVYMDIQQQVSSADTNSTNNDANGNPRISTRSVATQVAAQSGQTVLLG 262

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF ++  ++  TE+ +  TP ++   +     +  
Sbjct: 263 GLIKQDNAETVNAVPYLGRIPGLRWLFGSTSKSKGRTELIVLITPRVI--TSSSQARQVT 320

Query: 432 DHYSV 436
           D Y  
Sbjct: 321 DDYRQ 325


>gi|85712729|ref|ZP_01043774.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
 gi|85693461|gb|EAQ31414.1| Type II secretory pathway, component PulD [Idiomarina baltica
           OS145]
          Length = 695

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 70/445 (15%), Positives = 141/445 (31%), Gaps = 84/445 (18%)

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG-------KNVGQANVILI-----GH 104
             ++Q+   V      D    ++   S R +              G   +++        
Sbjct: 182 SRLVQIIERVDKAGDQDVDIVELQYASARELVGIAQNLFEKANADGTPALLIPKIVADER 241

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADS---------------------NIRVEMVSD 143
               +++ +      +  L   L + +                        N+   + ++
Sbjct: 242 SNSVIVSGEPRARSRVVKLIKQLDQDLKTEGNTRVYYLKYARAEEMVEVLQNVSQSIKAE 301

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
                G       +  ++ +S    + +           + + V+  L+I    QV ++ 
Sbjct: 302 EAKQTGQNSVRNRADNSISISAHESTNTVVITAEPDMLAALENVIRDLDIR-RAQVQVEA 360

Query: 201 TIAEVRRDILKQIGFQHSITGSS-------------------------SGPSKSFAADFG 235
            I EV        G Q                                 G S +   D G
Sbjct: 361 IIVEVLEGDNVDFGIQWISENGGLVQYNTGNQVPIGSLAAAAYQARPREGTSVTTVNDNG 420

Query: 236 GKFVSE---------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
               +                G    +     +  +  V+ A+ + T    LA P++  +
Sbjct: 421 QTVTTTNPEERGNLELLANLLGNVNGMMFGTIQNDWAAVVQAVSQDTNSNILATPSIVTV 480

Query: 281 SGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
             + ASF  G +    T       + +   +V   + G+ L  TP +     + + I+ E
Sbjct: 481 DNEEASFLVGQEVPTITGSTLGNDNQSPFQTVDRQEIGIKLKVTPQINEGNAVQMVIEQE 540

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS      +   +     R+  TTV    G TIVL GL+ +D+Q+    IPLL  IP +G
Sbjct: 541 VSSLSGATSVDVI--VNKRELKTTVMAEDGETIVLGGLIDEDVQESVSKIPLLGDIPFIG 598

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF ++  + ++  + +   P +V+
Sbjct: 599 RLFSSTSTSTQKRNLMVFIRPTIVR 623


>gi|91791628|ref|YP_561279.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713630|gb|ABE53556.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 683

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 110/283 (38%), Gaps = 26/283 (9%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            ++    + +   +        +  L+ +      QV ++  +  V+ D+ + +G +  I
Sbjct: 398 SVAVDQRTNTLLVKDTADIIDNIHRLIEVLDIPIKQVLIESRMVTVKDDVSEDLGIRWGI 457

Query: 220 TGSSSGPSKSFAADFGGKFVSE---------------------GGDFSVKGVLDRFSFET 258
           T        S +        +                         F V  + D    + 
Sbjct: 458 TDQQGTKGTSGSLTGSQNIANGVVPSIDDRLNVNLPAAASNHTSIAFHVAKLADGTILDL 517

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            L ALE+      +A P +T  S Q A++   G  +    S+S+GATSVT     + L  
Sbjct: 518 ELSALEQENKGEIIASPRITT-SNQKAAYIEQGVEIPYVQSTSSGATSVTFKKAVLSLRV 576

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKD 376
           TP +    R+ L ++         V+    P+     ++  T V + +G TIVL G+ + 
Sbjct: 577 TPQITPDNRVILDLEITQDSQGKTVDTPTGPAVAIDTQRIGTQVLVDNGETIVLGGIYQQ 636

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++      +P+L  IP +G LFRN+    E  E+ I  TP +V
Sbjct: 637 NLISRVSKVPILGDIPYVGFLFRNTTDKNERQELLIFVTPKIV 679


>gi|292489895|ref|YP_003532785.1| protein transport protein hofQ [Erwinia amylovora CFBP1430]
 gi|291555332|emb|CBA23681.1| Protein transport protein hofQ precursor [Erwinia amylovora
           CFBP1430]
 gi|312174079|emb|CBX82332.1| Protein transport protein hofQ precursor [Erwinia amylovora ATCC
           BAA-2158]
          Length = 414

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/428 (17%), Positives = 160/428 (37%), Gaps = 31/428 (7%)

Query: 8   FFTMMSIFLFSSNP-SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV 66
              ++ +++   +P + A+ P     + A +      +   +++++ +   +   + + +
Sbjct: 1   MLRILCLWMALISPLAAAQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRL 60

Query: 67  QDV--LVSDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIE 117
           +DV    +          S       + +F        Q    +   + ++ML L   I 
Sbjct: 61  KDVPWRQALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRIL 120

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
             +     ++   +     R+     ++ L     ++        L++T           
Sbjct: 121 TLVHADAASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT----------- 169

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--- 234
               +  +  L++   +Q+ L   I  +  + L+++G    ++G +        +     
Sbjct: 170 ----EHWVRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVD 224

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                  G        LD    E  L ALE       +A P L     Q+AS   G +  
Sbjct: 225 LASGRPAGVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIP 284

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYR 352
           Y+  + ++G+T++   +  + +  TP V S GRI   L I   V    +     ++ +  
Sbjct: 285 YEVSTGNSGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTID 344

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            ++ DT V L  G T+ L G+ +         +P L  IP+LG+LFR+    ++  E+ I
Sbjct: 345 KQEIDTQVMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVI 404

Query: 413 AATPFLVK 420
             TP LV+
Sbjct: 405 FITPRLVR 412


>gi|208779792|ref|ZP_03247136.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
 gi|208744247|gb|EDZ90547.1| type IV pilus secretin PilQ family protein, putative [Francisella
           novicida FTG]
          Length = 596

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPTPVDTFVGT 409

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  V      +  + ALE  +    +A P L   + Q A F   G+ +    ++++
Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
           GA +V   +  + L  TP +   G I + I    +                P  + R+  
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP 
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588

Query: 418 LV 419
           ++
Sbjct: 589 II 590


>gi|319424897|gb|ADV52971.1| MSHA system outer membrane secretin, MshL [Shewanella putrefaciens
           200]
          Length = 559

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 112/297 (37%), Gaps = 22/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 240 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 299

Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                 Q G Q         ++  +    A   G  V+          +    F T+++ 
Sbjct: 300 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 359

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
           L+    +  L+ P +TA + Q A    G    + T  S          +T    +T    
Sbjct: 360 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 419

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
           G+ L  TP +   G + L +   V +         + +           +R++DT +   
Sbjct: 420 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 479

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           SG  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V 
Sbjct: 480 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVVD 536


>gi|332678440|gb|AEE87569.1| Type IV pilus biogenesis protein PilQ [Francisella cf. novicida
           Fx1]
          Length = 596

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 72/422 (17%), Positives = 154/422 (36%), Gaps = 40/422 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVRGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS------------------EG 242
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPTPTPTPTPTPTPVDTFVGT 409

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  V      +  + ALE  +    +A P L   + Q A F   G+ +    ++++
Sbjct: 410 TAKLMYTVAGGVQLQMEIRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATAS 468

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKAD 357
           GA +V   +  + L  TP +   G I + I    +                P  + R+  
Sbjct: 469 GAAAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREIT 528

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP 
Sbjct: 529 TKVMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPK 588

Query: 418 LV 419
           ++
Sbjct: 589 II 590


>gi|119776501|ref|YP_929241.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
 gi|119769001|gb|ABM01572.1| type IV pilus biogenesis protein PilQ [Shewanella amazonensis SB2B]
          Length = 685

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 118/318 (37%), Gaps = 39/318 (12%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              +   +      +     +V +     T+     A  L                  ++
Sbjct: 381 ATDIAELLKSEGSSLLSDRGSVAVDERTNTLLVKDTAETLVNV---------------QR 425

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------- 229
           ++ +L+I    QV ++  +  V+ ++ + +G +  +T        S              
Sbjct: 426 MIEVLDIPIR-QVLIESRMVTVKDNVAEDLGIRWGVTDQQGTKGTSGSLEGAESIAGGVI 484

Query: 230 ------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                    +      +    F V  + D    +  L ALE+      +A P +T  S Q
Sbjct: 485 PAISDRLNVNLPAPTNAASIAFHVAKLADGTVLDMELSALEQENKGEIIASPRITT-SNQ 543

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A++   G  +    +SS+G+T+V      + L  TP +    R+ L ++         V
Sbjct: 544 KAAYIEQGVEIPYVSASSSGSTTVEFKKAVLSLRVTPQITPDNRVILDLEITQDSRGETV 603

Query: 344 NAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           +       +   ++  T V + +G TIVL G+ + ++      +P+L  IP++G LFRN+
Sbjct: 604 DTATGRAVAIDTQRIGTQVLVDNGETIVLGGIYQQNLISRVSKVPVLGDIPLVGFLFRNT 663

Query: 402 RFNREETEIFIAATPFLV 419
               E  E+ I  TP +V
Sbjct: 664 SDKNERQELLIFVTPKIV 681


>gi|260774710|ref|ZP_05883614.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609366|gb|EEX35517.1| type IV pilus biogenesis protein PilQ [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 454

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 75/416 (18%), Positives = 152/416 (36%), Gaps = 33/416 (7%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
                +     +I      ++ ++  +   + + V++  V  P   D+++       L  
Sbjct: 46  FQDIPVRQVLQQIADYNDFNLVVSDAVSGNLTLRVKE--VPWPQLLDIILRMKG---LEK 100

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   ++    +  Q     +  E+  A L+      IA    +   ++  +      
Sbjct: 101 RMDGSVLLVATAAEIAQFRQQKLEQEKVTAELQPLESEIIAMRFAKAADIAALLSDSAAT 160

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R + +       + T             + K ++  L++  + QV ++  I  +    L+
Sbjct: 161 RMLSERGAISIDTRTNSLLIRDVAINIQAMKAIITALDVPVK-QVQIEARIVSLNEGDLQ 219

Query: 212 QIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEGGDFSV 247
           ++G +   + ++   S   +                                +    F V
Sbjct: 220 ELGVRWGFSSTNGSHSVGGSIENNLANLNLYGDSDSSLDDFLNVNLAATSVNASTIAFQV 279

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +      +  L AL+R +    ++ P L   + Q A    G +  Y   +SS GATSV
Sbjct: 280 AKLGSDTLLDLELSALQRESRAEVISSPRLITTNKQPAYIEQGTEIPYLEAASS-GATSV 338

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSG 365
                 + L  TP + S  R+ L +      P  V+    G+  +   ++  T V + +G
Sbjct: 339 NFKKAVLSLKVTPQITSDNRLILDLNVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVNNG 398

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            TIVL G+ +  +    + +PLL  IP+LG LFR +     ++E+ I  TP +V P
Sbjct: 399 ETIVLGGIYQHSVSDTVDQVPLLGDIPLLGGLFRRTYQQMGKSELLIFVTPTVVAP 454


>gi|269959332|ref|ZP_06173715.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835769|gb|EEZ89845.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 715

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 61/242 (25%), Positives = 102/242 (42%), Gaps = 13/242 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L++    QV L++TIAEV      + G + + +  +   S   A          G
Sbjct: 460 PLIAQLDV-MPKQVILEMTIAEVTMTDEFKFGVEWAFSNGNFSASTKDAFGL----DKVG 514

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G F      D F     L A E    +  +++P+L    G  A+   G        +++ 
Sbjct: 515 GGFIKWMSGDDF---INLQAFESNNNVNIMSKPSLLVRDGVEANINVGTDIPVVGQTTTD 571

Query: 303 GAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-EPVIGVNAGDMPSYRVRKAD 357
                  SV     GV +  TPT+ + G + + I  E S +   G +    PS   R   
Sbjct: 572 SNNGVTRSVEYRKTGVKVAVTPTINAQGIVSMVISQENSNQVDGGTSVEGNPSIFDRSIT 631

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V   SG T++L GL+ +++      +P L  +P++G LF     N+ +TE+ I  TP 
Sbjct: 632 TEVVAESGQTVILGGLISENVTNNGSAVPFLGSLPVVGGLFGTKTDNKTKTELVIMVTPR 691

Query: 418 LV 419
           +V
Sbjct: 692 IV 693


>gi|160873627|ref|YP_001552943.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|160859149|gb|ABX47683.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS195]
 gi|315265856|gb|ADT92709.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS678]
          Length = 559

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    ++ GV         F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
            G+ L  TP + S G + L +   V        +  +   + ++P  +  +R++DT +  
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|262273168|ref|ZP_06050984.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
 gi|262222746|gb|EEY74055.1| type II secretory pathway component EpsD [Grimontia hollisae CIP
           101886]
          Length = 671

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 105/291 (36%), Gaps = 44/291 (15%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   + + V+  L+I    QV ++  I E+       +G Q            +  
Sbjct: 323 TAPPDILRALEGVIAQLDIR-RAQVLIEAMIVEMSESDGANLGIQWGSLDGGGIQFGNTG 381

Query: 232 ADFGGKFVSE-------------------------------------GGDFSVKGVLDRF 254
                   ++                                     GG   +   +   
Sbjct: 382 VPITNYLAAQEKAKDKTTTETRFDRDNIPVEVPITESGDPTAIAEVLGGVSGLAAGVVLG 441

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTT 309
            +  ++ A+   +    L+ P+L  +  + ASF  G +    T S++         +V  
Sbjct: 442 DWTALVTAVSSNSDSNILSSPSLMVLDNEEASFIVGEEVPVVTGSTTGSNNDNPFQTVER 501

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            D GV L  TP +     + L I+ E+S  +    A D+  +  R+  T+V       IV
Sbjct: 502 KDVGVKLKITPQINEGDSVQLNIEQEISNVLGASGAVDI-RFGKRQLTTSVLAADQQMIV 560

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+GL+ +   + ++ +PLL  IP+LG LF+++   + +  + +   P +++
Sbjct: 561 LSGLIDEQTNESEQKVPLLGDIPLLGHLFKSTSSGKTKRNLMLFIKPTIIR 611


>gi|30250239|ref|NP_842309.1| pilQ; fimbrial type-4 assembly signal peptide protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30181034|emb|CAD86224.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 718

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 104/264 (39%), Gaps = 39/264 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238
               QV ++  I E      + +G +  +  ++               +   ++   G  
Sbjct: 446 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSETNGRRLGISGNLGNSSGLAGGT 505

Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           VS  G                         S+  + +       L ALE  +  R +A P
Sbjct: 506 VSPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSKGRVIASP 565

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L   +   AS   G +  ++T+S +     +      + L  TP +     I +++  +
Sbjct: 566 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 621

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++   G N    P+   ++  T V + +GGT+V+ G+ +   +Q +  +PLL  IP+LG
Sbjct: 622 VNQDTRGENTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKQDRNQVPLLGDIPVLG 681

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF+N+    ++ E+ I  TP ++
Sbjct: 682 NLFKNTAKRDDKRELLIFVTPRIL 705


>gi|254490277|ref|ZP_05103466.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxidans DMS010]
 gi|224464410|gb|EEF80670.1| type IV pilus secretin PilQ subfamily, putative [Methylophaga
           thiooxydans DMS010]
          Length = 672

 Score =  174 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 117/316 (37%), Gaps = 55/316 (17%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              +I ++  ++++++      + D ++ ++  +  +                       
Sbjct: 380 PRGSITIDDRTNSLLIRDTADNLVDIRQVIDELDKPV----------------------- 416

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------- 236
              QV ++  I     D  K++G +   +  S+      +    G               
Sbjct: 417 --RQVLIESRIVIANNDFNKELGVRFGTSAQSNTLGAGSSGSLTGLSTNPNNDDQIRANS 474

Query: 237 ------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          S     ++  +      E  L A++       ++ P +   + Q 
Sbjct: 475 VVGNDLNVNLPVSNPSGSIGLALAKLPLGMILELELSAMQAEGKGEVISSPRVITSNQQQ 534

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A+   G +  Y+  +SS GAT+V+  +  + L  TP +    RI + +  EVS+  +G  
Sbjct: 535 ATIEQGTEIPYQEATSS-GATNVSFKEAVLKLDVTPQITPDDRIVMDL--EVSKDEVGEV 591

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +PS   R   T V + +G T+VL G+ +       E +P    +P +G LF+N+   
Sbjct: 592 FLGVPSIDTRSVKTQVLVDNGETVVLGGIYEQSTNDNVERVPFFGDLPYVGFLFKNTFKE 651

Query: 405 REETEIFIAATPFLVK 420
             + E+ +  TP +VK
Sbjct: 652 DRKRELLVFVTPKIVK 667


>gi|329894543|ref|ZP_08270351.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
 gi|328922981|gb|EGG30307.1| Type IV pilus biogenesis protein PilQ [gamma proteobacterium
           IMCC3088]
          Length = 691

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 34/269 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            +++L++I    QV ++  I   + ++  ++G       +++    +  +  G       
Sbjct: 419 NLIDLVDIPIR-QVMIEARIVIAQSNLDDELGISWGGGHTNNNFFGNALSISGDVENVTN 477

Query: 236 ----------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                        G F+V            L ALE       ++
Sbjct: 478 LNQSIIDGLPGSVSLPGSLLVDLGVAEPAGSFAVGFTSKDVFLTAELSALEAVGKGEVVS 537

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +P +     Q AS  SG +  Y+   S+ GAT+    +  + L  TP +    RI L + 
Sbjct: 538 QPKVITGDKQKASIKSGTEVPYQES-SAGGATATQFKEAVLQLDVTPNITPDDRILLDLV 596

Query: 334 TE---VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                + + V   N G +P+    +  T V + +G TIVL G+ + +  +    +P+L  
Sbjct: 597 INQDSIGDLVPSGNGGSIPTIDTTELTTQVLVGNGETIVLGGVFRTEDLEKVSKVPVLGD 656

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IPI+G  F++S  +R +TE  I  TP ++
Sbjct: 657 IPIMGQFFKSSSTSRTKTETLIFITPRIL 685


>gi|239996578|ref|ZP_04717102.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii ATCC 27126]
          Length = 590

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 108/269 (40%), Gaps = 24/269 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--- 229
               +   ++K +N L+I  + QV ++  +  V  D+ +Q+G +   +        S   
Sbjct: 320 DTLASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGVSGSL 378

Query: 230 -----------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                               +      +    F +  ++D    +  L ALE       +
Sbjct: 379 EGADTIAGGIVPSIDNRLNVNLPVTSAAGSIGFQIASLVDGTILDLELSALESENKGEII 438

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR- 331
           A P +T  +   A    G +  Y   +SS GATSV      + L  TP +    RI L  
Sbjct: 439 ASPRITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDL 497

Query: 332 -IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  +     +  + G+  +   ++  T V + +G TIVL G+ +         +PL   
Sbjct: 498 VVTQDTRGETVSTSTGEAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGD 557

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P++GALFRNS   +++ E+ I  TP +V
Sbjct: 558 LPVVGALFRNSSQLQQKRELLIFVTPKIV 586


>gi|56708227|ref|YP_170123.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670698|ref|YP_667255.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457344|ref|ZP_03665817.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370714|ref|ZP_04986719.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254875049|ref|ZP_05247759.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|56604719|emb|CAG45789.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321031|emb|CAL09172.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568957|gb|EDN34611.1| type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis FSC033]
 gi|254841048|gb|EET19484.1| type IV pilus multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|282159452|gb|ADA78843.1| Type IV pilin multimeric outer membrane protein [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 594

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 72/420 (17%), Positives = 153/420 (36%), Gaps = 38/420 (9%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP--TKADVVVHSP 84
           P       A +      + +   +++ ++  +   + +D+++V    P     ++V+ S 
Sbjct: 180 PISISFKDAPVQTVLQVLSEFAGLNLVVSSSVHGNISIDLKNV----PWNEVMNIVLVSK 235

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
               L  K +     +    +      L++  +R + +    +  FI  +    +     
Sbjct: 236 G---LATKKMSSILYVATAAEIAAQEQLELQTKRSLENNATLVTEFIPLNYTTAQAAQTV 292

Query: 145 VV----LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
           +      +G + + + S  A   + T        +      K+V+N ++I   DQV ++ 
Sbjct: 293 ITSMAKQNGGIMSPRGSITAD--ARTNTLIVTDTEEKLPRIKEVVNEIDIPN-DQVLIEA 349

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------------EGGD 244
            I EV R    ++GF + +   S   +            +                    
Sbjct: 350 RIVEVLRTSALELGFNYGVVDPSGRVNIGLDTFNSNPNPAPGPTPGPTPTPVDTFVGTTA 409

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                +      E  + ALE  +    +A P L   + Q A F   G+ +    ++++GA
Sbjct: 410 KLAYTIAGGVRLEMEVRALESESLAEEVASPHLVVANNQVA-FIKDGEDVPYNQATASGA 468

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-----VNAGDMPSYRVRKADTT 359
            +V   +  + L  TP +   G I + I    +                P  + R+  T 
Sbjct: 469 AAVAFQEAVLELQVTPQIAPDGNIIMDILVTKNSVGASPGKTPQGGDLPPIIKKREITTK 528

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V    G T+V+ G+ +   ++ +  IP L  IP LG LF  ++   +++E+ I  TP ++
Sbjct: 529 VMTKDGDTVVIGGIYQKTQKEERNKIPFLGDIPYLGYLFSYTKITDQDSELLIFITPKII 588


>gi|54307500|ref|YP_128520.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
 gi|46911920|emb|CAG18718.1| putative fimbrial assembly protein [Photobacterium profundum SS9]
          Length = 567

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 101/260 (38%), Gaps = 26/260 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKF--- 238
           +++ L+I  + QV ++  I  +    + ++G +  +     +     S  ++ G      
Sbjct: 308 IISALDIPVK-QVQIEARIVTINEGDVDELGVRWGVSKHNGNFTLGGSIESNLGAVGLLK 366

Query: 239 -----------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                        +     +  L AL+  +    ++ P L   +
Sbjct: 367 DDVSVDDFLNVNLAAQKAGASSIAFQVAKIGDILLDLELSALQSESKAEIISSPRLVTTN 426

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            Q+A    G +  Y    SS+GA SV      + L  TP +    ++ L +     EP  
Sbjct: 427 KQTAYIEQGTEIPYLEA-SSSGAVSVAFKKAVLSLMVTPQITPDNKLVLDLVVTQDEPGK 485

Query: 342 G--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 G+  S   ++  T V + +G TIVL G+ +  + +    +PLL  +P LGALFR
Sbjct: 486 TVVTGIGEAVSINTQRIGTQVLVENGETIVLGGIYQHQVNKSVTKVPLLGDLPYLGALFR 545

Query: 400 NSRFNREETEIFIAATPFLV 419
           +S     + E+ I  TP +V
Sbjct: 546 HSLEEMGKRELLIFITPKIV 565


>gi|152999034|ref|YP_001364715.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
 gi|151363652|gb|ABS06652.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS185]
          Length = 559

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    ++ GV         F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
            G+ L  TP + S G + L +   V        +  +   + ++P  +  +R++DT +  
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|261250571|ref|ZP_05943146.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
 gi|260939140|gb|EEX95127.1| type II secretory pathway component EpsD [Vibrio orientalis CIP
           102891]
          Length = 654

 Score =  174 bits (440), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 107/293 (36%), Gaps = 46/293 (15%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
                  ++ + V+  L+I    QV ++  I E+       +G Q         I  S++
Sbjct: 302 TAPPDIMNALQDVIAQLDIR-RAQVLIEALIVEMAEGDGVNLGVQWGNLETGAMIQYSNT 360

Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
           G S                                     D+     + G        + 
Sbjct: 361 GASVGQVMVGLEEAKDTTTTTAVYDSDGKFLRNETTTEEGDYSTLASALGSVNGAALSIA 420

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307
              +  ++ A+   +    L+ P++T +    ASF  G +           ++     +V
Sbjct: 421 MGDWTALISAVSTDSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTSGSNNENPFQTV 480

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ L   P +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  
Sbjct: 481 DRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGQM 539

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IVL GL+ +   + +  +P+L  IP LG LF+++    E+  + +   P +++
Sbjct: 540 IVLGGLIDERALESESKVPILGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 592


>gi|302342781|ref|YP_003807310.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
 gi|301639394|gb|ADK84716.1| general secretion pathway protein D [Desulfarculus baarsii DSM
           2075]
          Length = 746

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 14/245 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++V IAEV  D   ++G +      +               +   G        +
Sbjct: 472 PKQVLIEVVIAEVTLDDQLKLGVEWRYLTENGATFSDINLKPDADLLPTSGLVYTIAKTN 531

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------ 306
              F   L AL +   ++ ++ P L A   QSA    G +    T  +++   S      
Sbjct: 532 ELLFT--LKALAQKDKLQVISSPLLLAAENQSARILVGREIPIITDLTTSEDISTSTGNK 589

Query: 307 -----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTV 360
                +   D G++L  TP +   G + L I+ EVS+           P++  R A T V
Sbjct: 590 VVDRSIEYRDVGIILTVTPRINDSGVVRLNIRQEVSDVLTDSFGDTGSPAFSQRTATTNV 649

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G +IVLAGL+++   ++  G+P LS +PILG LF+  +     TE+ +  TP ++ 
Sbjct: 650 VTTDGQSIVLAGLIQETKHKIDSGVPFLSDVPILGYLFKTEKDVDSRTELILTITPHVIH 709

Query: 421 PVAMR 425
            +   
Sbjct: 710 DMNDA 714


>gi|304411539|ref|ZP_07393152.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|307306685|ref|ZP_07586427.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
 gi|304350066|gb|EFM14471.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS183]
 gi|306910653|gb|EFN41082.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           BA175]
          Length = 559

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    ++ GV         F T+++
Sbjct: 299 TLSDGYQQGIQWENVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGATPVTTPQVELTPFF 418

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
            G+ L  TP + S G + L +   V        +  +   + ++P  +  +R++DT +  
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 479 ASGDVVIIGGLMKSENTEVVSQVPLLGDIPFLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|15597065|ref|NP_250559.1| secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218892174|ref|YP_002441041.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
 gi|9947858|gb|AAG05257.1|AE004613_2 secretion protein XqhA [Pseudomonas aeruginosa PAO1]
 gi|218772400|emb|CAW28182.1| secretion protein XqhA [Pseudomonas aeruginosa LESB58]
          Length = 776

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+Q+    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634


>gi|126176391|ref|YP_001052540.1| general secretion pathway protein D [Shewanella baltica OS155]
 gi|125999596|gb|ABN63671.1| general secretion pathway protein D [Shewanella baltica OS155]
          Length = 705

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373

Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241
                    +     G                                          + 
Sbjct: 374 KAGGGTQFNNLGPTIGEVGAGVWAAQTEKASQTCTGSGDNKTCTDNPDKRGDVTLLAQAL 433

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296
           G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +         
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           + S+S    +V   + GV L   P +     + L I+ EVS            S+  R+ 
Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV   SG  +VL GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I   P
Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611

Query: 417 FLVK 420
            +++
Sbjct: 612 TIIR 615


>gi|330882201|gb|EGH16350.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 216

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 81/235 (34%), Positives = 119/235 (50%), Gaps = 24/235 (10%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              S        + + +L AL+    +  LAEP +TA++GQ+ASF +GG+ +   V  + 
Sbjct: 1   NGISAGLASGNVNIDAMLEALQSNGVLEVLAEPNITAMTGQTASFLAGGE-VAVPVPVNR 59

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAGDMPSYRVRKADT 358
               +    YGV L F+PT+L  GRI L+++ EVS  +       N   +PS+RVR+ADT
Sbjct: 60  EVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGYQVPSFRVRRADT 119

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R ETE+ I  TP+L
Sbjct: 120 RVEVGSGQTFAIAGLFQHESSQDMDKVPMLGDMPILGNLFRSKRFQRNETELVILITPYL 179

Query: 419 VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIY 473
           V+PV  R ++ P D                         +   G    GA GF  
Sbjct: 180 VEPVKDRVVATPLDKQRAAS-------------------TASAGPRSGGAFGFYM 215


>gi|262401919|ref|ZP_06078484.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
 gi|262351891|gb|EEZ01022.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC586]
          Length = 567

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 69/419 (16%), Positives = 138/419 (32%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 159 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 214

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 215 --VDGNVI----LIAPKEELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 268

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 269 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 327

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L ++G +  +  ++   S                                    +  
Sbjct: 328 EGNLDELGVRWGVMSTNGSHSVGGTIESNLWQQGLLAEDEFPVDEFLNVNLAAASTNASS 387

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y   SSS 
Sbjct: 388 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPYLESSSSG 447

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
            +T  +     + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 448 ASTV-SFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 506

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 507 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 565


>gi|113869481|ref|YP_727970.1| general secretion pathway protein D [Ralstonia eutropha H16]
 gi|113528257|emb|CAJ94602.1| general secretion pathway protein D [Ralstonia eutropha H16]
          Length = 812

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 64/313 (20%), Positives = 105/313 (33%), Gaps = 39/313 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242
           A   QV ++  I EV      ++G Q     SS G + +  A        +         
Sbjct: 434 ARRAQVYIESMIVEVTSTQASELGIQWQGLISSPGGNNNVFAGTNFGTGGQNILNLTLAG 493

Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                G  ++  V        +L AL    ++  L+ P L  + 
Sbjct: 494 ALADSNRTAGIAAAQGLVQDIGGLNLGIVNKAMGLGALLRALGSNGSVNLLSTPNLITLE 553

Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S +        T   +    D G+ L   P +   G + ++I 
Sbjct: 554 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 613

Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E S  V    N    P+  VR  +T V +  G  IVL GL++D      + +PLL  IP
Sbjct: 614 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 673

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451
            +G LFR    NR +T + +   P++++     D    D   Y           N + + 
Sbjct: 674 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQQGFVSPNIMVRD 733

Query: 452 YGPKEASEVEGQN 464
                    +  +
Sbjct: 734 TNTPLLPPADAPS 746


>gi|254240262|ref|ZP_04933584.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
 gi|126193640|gb|EAZ57703.1| secretion protein XqhA [Pseudomonas aeruginosa 2192]
          Length = 776

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 96/508 (18%), Positives = 170/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRSNIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+Q+    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLQRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634


>gi|261211199|ref|ZP_05925488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
 gi|260839700|gb|EEX66311.1| type IV pilus biogenesis protein PilQ [Vibrio sp. RC341]
          Length = 571

 Score =  173 bits (439), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 71/419 (16%), Positives = 143/419 (34%), Gaps = 43/419 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNGFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
             + G  +    +I    +        +   R    L       I  +  +   ++  + 
Sbjct: 219 --VDGNVI----LIAPKDELDLREKQALEKARLAEELGDLKSEIIKINFAKASDIAAMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T            +  ++++  L+I  + QV ++  I  V+
Sbjct: 273 GEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QVQIEARIVTVK 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA------------------------ADFGGKFVSEG 242
              L ++G +  +  ++   S   +                                +  
Sbjct: 332 EGNLDELGVRWGVMSTNGSHSVGGSIESNLWQQGLLADDKFPVDQFLNVNLASTSANASS 391

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F V  +      +  L AL+  +    ++ P L   + Q A    G +  Y   SSS+
Sbjct: 392 IAFQVAKLGSDTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTEIPY-LESSSS 450

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTV 360
           GA++V+     + L  TP +    R+ L +          +    G+  S   ++  T V
Sbjct: 451 GASTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVSIDTQRIGTQV 510

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+ I  TP +V
Sbjct: 511 LVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSELLIFVTPKVV 569


>gi|257095715|ref|YP_003169356.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257048239|gb|ACV37427.1| type IV pilus secretin PilQ [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 703

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 103/272 (37%), Gaps = 38/272 (13%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--HSITGSSSGPSKSFAADFGGKFVSE 241
           ++  +++A   QV ++  I E      K +G +   +         +  +        + 
Sbjct: 427 IITKVDVAAR-QVMIEARIVEAGDSFAKNLGVRLGWNQRQGYQFGGQGASGTAMAGARAN 485

Query: 242 GGDFSVKGVLDRFSFET----------------------------------VLHALERAT 267
              F    V D  +F T                                   + ALE   
Sbjct: 486 TPGFYTTQVRDIPNFNTDAFNVNLPATPRTGNAGLFSLVLYNSALTQFLNTEISALEADG 545

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + ++ P +   +   A    G +  Y+  +SS GATSV+     + L  TP +   G 
Sbjct: 546 RGKVISSPRVMTANNIEALIEQGVEIPYQQATSS-GATSVSFKKAVLSLKVTPQITPDGN 604

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + ++++     P   +N G   +   +   T V + +GGT+V+ G+   +++   + IP 
Sbjct: 605 VTMKVEVNKDTPNTRLNTGAGVAIDNKHVKTEVLVENGGTVVIGGIYTQEVRNNTQRIPF 664

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +P +G LF++  +  ++ E+ I  TP +V
Sbjct: 665 FGDLPYIGWLFKSREWIDDKQELLIFITPRIV 696


>gi|325981841|ref|YP_004294243.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
 gi|325531360|gb|ADZ26081.1| type IV pilus secretin PilQ [Nitrosomonas sp. AL212]
          Length = 698

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 57/267 (21%), Positives = 105/267 (39%), Gaps = 32/267 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
           K +  L++  E QV ++  I E   +  + +G +  I  +S                   
Sbjct: 427 KRIQKLDV-FERQVMIEARIVEATDNFSRNLGARFGIQNASGLGDQTLGVSGNLTGSSAL 485

Query: 224 -SGPSKSFAADFGGKFVSEGGDFSVKG----------VLDRFSFETVLHALERATAIRTL 272
            +G   S A +      +      + G          + +       L ALE     R +
Sbjct: 486 AAGGGVSGANNLNVNLPAAAATGLLGGPAALGLSLMKINNNRLINLELSALETDQKGRVI 545

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P +    G  A    G +  ++  +SS GATS+   D  + L   P +   G+I + +
Sbjct: 546 ASPRVVTAHGVEAIIEQGDRIPFQQATSS-GATSIRFMDATLRLRVKPLITYNGQIDMEL 604

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                     +N    P+   ++  T V + +GGT+V+ G+      ++   +P+L  IP
Sbjct: 605 NVNQDRIGAIINQFLPPAINTKQVTTKVLVENGGTVVIGGIFDRTENRVVNKVPMLGDIP 664

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           +LG +FRN+     + E+ I  TP ++
Sbjct: 665 VLGHVFRNTTRVDNKRELLIFVTPRIL 691


>gi|254246562|ref|ZP_04939883.1| AscC [Burkholderia cenocepacia PC184]
 gi|124871338|gb|EAY63054.1| AscC [Burkholderia cenocepacia PC184]
          Length = 543

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 43/451 (9%)

Query: 5   QRTFFTMMSIFLFSS-NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +    T  +    +   P +   PP + ++AA       +    ++IS+ L  V +    
Sbjct: 71  RTALPTETAAAAPTLEGPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAF 128

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAH 122
             +              V    T+ L      +A   L+   G  M    +++     A 
Sbjct: 129 DAIAR-FTGLNIVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAE 187

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
           L    R       +         +     V     +Q    L      Q   ++   +++
Sbjct: 188 LAARERERF---EMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAA 244

Query: 182 KKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
               NLL +                      QV ++  I E  +   + +G + ++    
Sbjct: 245 DPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQG 304

Query: 224 SGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
             PS                AA   G F +    F++         +  L ALE     +
Sbjct: 305 RPPSAEGASFTANARNALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQ 364

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ P +       A    G +  Y+      G + V      + L   P +   GR+ L
Sbjct: 365 IVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVL 423

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  +V++  +G      P+   +   T VE+ +GGT+ + G+ +   +     +PLL K
Sbjct: 424 DL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGK 481

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKP 421
           IP LGALFR+     +  E+ +  TP +V  
Sbjct: 482 IPFLGALFRHRAQRDQRNELVVFITPTVVDA 512


>gi|183179752|ref|ZP_02957963.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
 gi|183013163|gb|EDT88463.1| fimbrial assembly protein [Vibrio cholerae MZO-3]
          Length = 377

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 116/309 (37%), Gaps = 28/309 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G V  + +         T            +  ++++  L+I  + QV
Sbjct: 69  KASDIAAMIGGEGNVNMLSERGSISIDERTNSLLIRELPDNIAVIREIIESLDIPVK-QV 127

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
            ++  I  V+   L+++G +  +  ++   S   +                         
Sbjct: 128 QIEARIVTVKEGNLEELGVRWGVMSTNGSHSVGGSIESNLWQKGLLADDEFPVDEFLNVN 187

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+  +    ++ P L   + Q A    G +
Sbjct: 188 LASTSANASSIAFQVAKLGSGTLLDLELSALQNESKAEIISSPRLITTNKQPAYIEQGTE 247

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
             Y    SS+GA++V      + L  TP +    R+ L +          +    G+  S
Sbjct: 248 IPYLES-SSSGASTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRRGETVKTGTGEAVS 306

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR +     ++E+
Sbjct: 307 IDTQRIGTQVLVNNGETVVLGGIFQHSINNSVDKVPLLGDLPVLGALFRRTYEQMGKSEL 366

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 367 LIFVTPKVV 375


>gi|146291667|ref|YP_001182091.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
 gi|145563357|gb|ABP74292.1| pilus (MSHA type) biogenesis protein MshL [Shewanella putrefaciens
           CN-32]
          Length = 558

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298

Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                 Q G Q         ++  +    A   G  V+          +    F T+++ 
Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
           L+    +  L+ P +TA + Q A    G    + T  S          +T    +T    
Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
           G+ L  TP +   G + L +   V +         + +           +R++DT +   
Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V
Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|9626321|ref|NP_040655.1| hypothetical protein Pf3_5 [Pseudomonas phage Pf3]
 gi|138034|sp|P03668|VG430_BPPF3 RecName: Full=Putative assembly protein ORF430; Short=ORF430;
           Flags: Precursor
 gi|215375|gb|AAA88381.1| unknown protein [Pseudomonas phage Pf3]
 gi|215384|gb|AAA88390.1| unknown protein [Pseudomonas phage Pf3]
          Length = 430

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 62/270 (22%), Positives = 107/270 (39%), Gaps = 14/270 (5%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
           + + V+  +++    QV ++  + E   D  K++G       S    S   A D     V
Sbjct: 173 ALESVIQAIDVPVR-QVAIEANVVEASVDWSKRLGLNWGGALSLGNWSAVTAGDLS---V 228

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + G       + +  S + +  A+E     R ++ PTL  +  QSAS   G +  Y+   
Sbjct: 229 AAGSSIGFGFLSNTLSLDGLFTAMENEGNGRVVSRPTLLTLDRQSASVLRGTELPYQQS- 287

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +  GATSV      + L   P +     I + +      P        +P     +  TT
Sbjct: 288 AGDGATSVAFKHAALSLEVKPVISPDNSIVIEVLVSRDSPNFSNAIDGVPPIDTNRLVTT 347

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +P G T+VL G+     QQ    +  +S+IP +G LF+      E+ E+ I  TP ++
Sbjct: 348 IRVPHGQTVVLGGVYSTINQQGSSRVSGISRIPGIGRLFKKKEHVTEQYELLIFLTPRIL 407

Query: 420 K-PVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
              V     S   D        ++FF   +
Sbjct: 408 GLEVEPEKQSLVFD--------ESFFLGDL 429


>gi|116048592|ref|YP_792609.1| putative type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115583813|gb|ABJ09828.1| probable type II secretion system protein [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 803

 Score =  173 bits (439), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737


>gi|320352793|ref|YP_004194132.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
 gi|320121295|gb|ADW16841.1| general secretion pathway protein D [Desulfobulbus propionicus DSM
           2032]
          Length = 752

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 112/306 (36%), Gaps = 29/306 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSG------RNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           G   +   +    +  +    +          +      + V+  L+I     V L+  I
Sbjct: 320 GKASSAPSAPAISKEVKVVADKETNALIITGPREEYEVVEGVIKKLDIP-RRMVYLEALI 378

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF----VSEGGDFSVKGVLD------ 252
            EV+      IG Q +    S     S  A           +  G       L       
Sbjct: 379 MEVKVSKDFSIGVQWANADGSVVGGFSGNASSPYNMLKQMTTSPGSLPAGFTLGVLEEGI 438

Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
                   +   V++A +    +  +A P +     + AS   G    Y T  ++T    
Sbjct: 439 KIGDVVFPNLGAVVNAYKSDDDVNVIATPQILTTDNKKASIKVGENVPYITSKNTTDAEQ 498

Query: 304 -ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
             T+    D    L  TP V     + L I  EV +          PS   R A+TTV +
Sbjct: 499 DYTNYEYKDVATSLTITPQVNQAEVVRLEIGVEVIKLKNTEATDT-PSTFTRTAETTVVV 557

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421
            +  T+V+ G++  D    +  +P+L  IP+LG +F++   ++E+T ++I  TP +V+ P
Sbjct: 558 HNEQTVVIGGMIGQDTTSGEYKVPVLGDIPVLGWMFKSRSNSQEKTNLYIFITPHIVENP 617

Query: 422 VAMRDL 427
             + DL
Sbjct: 618 AEIADL 623


>gi|152998702|ref|YP_001364383.1| general secretion pathway protein D [Shewanella baltica OS185]
 gi|151363320|gb|ABS06320.1| general secretion pathway protein D [Shewanella baltica OS185]
          Length = 704

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 65/303 (21%), Positives = 110/303 (36%), Gaps = 45/303 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHTETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDSVGFGVQWAA 373

Query: 220 TGSSSGPSKSFAADFG-------------GKFVSEGGDFSVKGVLDRF------------ 254
                    +     G             G F++      V G                 
Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQDKEGTFITNPSTGQVIGQNPSTKGDVTLLAQALG 433

Query: 255 ------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
                        F  ++ A+   T    LA P++T +  Q ASF  G +         +
Sbjct: 434 KVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTAS 493

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            ++S    +V   + GV L   P +     + L I+ EVS            S+  R+  
Sbjct: 494 SNNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRLT 551

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV   SG  +VL GL+ +++Q+  + +P L  IPILG LF++S   + +  + I   P 
Sbjct: 552 TTVMADSGQIVVLGGLINEEVQESVQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPT 611

Query: 418 LVK 420
           +++
Sbjct: 612 IIR 614


>gi|254244921|ref|ZP_04938243.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
 gi|126198299|gb|EAZ62362.1| hypothetical protein PA2G_05797 [Pseudomonas aeruginosa 2192]
          Length = 803

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737


>gi|24375599|ref|NP_719642.1| MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
 gi|24350494|gb|AAN57086.1|AE015842_6 MSHA biogenesis protein MshL [Shewanella oneidensis MR-1]
          Length = 560

 Score =  173 bits (438), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 103/249 (41%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV L+  I EV      Q G Q        G +        G  +S+    S+ GV   
Sbjct: 288 RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGNTNINFGTSAGTGLSDKITSSLGGVTSL 347

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
                 F T++  L+    +  L+ P +TA + Q A    G    + T  S         
Sbjct: 348 SIKGSDFNTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 407

Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352
            +T    +T    G+ L  TP +   G + L +   V        +  +   + ++P  +
Sbjct: 408 VTTPQVELTPFFSGIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKDIKVSNESLELPLAQ 467

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL+K +  ++   +PLL  IP +G LF+N    +++TE+
Sbjct: 468 SEIRESDTVIRAASGDVVVIGGLMKSENIEVVSQVPLLGDIPFVGELFKNRSKQKKKTEL 527

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 528 IIMLKPTVV 536


>gi|171059772|ref|YP_001792121.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
 gi|170777217|gb|ACB35356.1| pilus (MSHA type) biogenesis protein MshL [Leptothrix cholodnii
           SP-6]
          Length = 577

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 120/324 (37%), Gaps = 47/324 (14%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           + ++ E QV L+  I EV      Q G   S  G + G + S      G  ++  G  ++
Sbjct: 245 VQVSIERQVMLEAKILEVELGSEAQSGINWSAFGRALGGALSIGLVQPGVTLAGSGALTL 304

Query: 248 KGV---------------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            G                          +F  +L  LE    ++ L+ P +  ++ Q A 
Sbjct: 305 GGTSITPGGNLAASSSGAPFYGLAFQSANFAALLSFLESQGKVQVLSSPRIATLNNQKAV 364

Query: 287 FTSGGQHLYKTV-----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
              G   LY T            S+ST +  +     G+ L  TP +   G++ L +   
Sbjct: 365 LKVGSDELYVTGVSSTTTATGSTSTSTPSVVLQPFFSGIALDVTPQIDDQGQVMLHVHPA 424

Query: 336 VSEPVIGVNAGDMPSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +S         ++ S            V + D+ V +  G  + + GL+  + ++ +  +
Sbjct: 425 ISTVSEKQKNINLGSLGSYQLPLASSTVNETDSIVRVRDGQIVAIGGLMSQEQREERSAV 484

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFF 444
           P L  +P++G LFR +     + E+ I   P +++     D   P  D +      + + 
Sbjct: 485 PGLGDVPLVGGLFRQTSTVMRKRELVILIKPTVIRA----DGPWPEADTHQPASQLQPWR 540

Query: 445 FNRVNKIYGPKEASEVEGQNYKGA 468
            + ++++  P+ A++         
Sbjct: 541 PDAMSQLQLPQAATDSPSDAATAP 564


>gi|238796139|ref|ZP_04639650.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
 gi|238720084|gb|EEQ11889.1| General secretion pathway protein D [Yersinia mollaretii ATCC
           43969]
          Length = 625

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 56/265 (21%), Positives = 100/265 (37%), Gaps = 9/265 (3%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGS 222
           ++T               ++V+  L+I    QV ++  I EV+ D    +G Q S   G 
Sbjct: 302 AQTNALIINATPDLLRDLEQVITQLDIR-RAQVLVEAIIVEVQDDDNLSLGVQWSNQHGG 360

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            S    + A+       S  G   +     R ++  +  AL        LA P++  +  
Sbjct: 361 GSNFPDTGASASNAIASSLKGVTGLATGFYRGNWSGLFTALRTNNQNDILATPSIVTLDN 420

Query: 283 QSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             A F+ G +    + S +T       +V     G+ L   P +     + L I+ EVS 
Sbjct: 421 MEAEFSVGQEVPVLSGSQTTTGDNIFRTVDRKSVGIKLKVKPQINKGDSVLLEIEQEVSS 480

Query: 339 PV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                         ++  R     V + S   +V+ GLL    Q +   +PLL  IP +G
Sbjct: 481 VAAKAPSGTGDLGATFNSRTVKNAVMVGSNNIVVVGGLLDSTSQDITSKVPLLGDIPGVG 540

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LFR++     +  + +   P +++
Sbjct: 541 FLFRSTTQKMVKRNLMLFIRPTIIR 565


>gi|120600401|ref|YP_964975.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
 gi|120560494|gb|ABM26421.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sp. W3-18-1]
          Length = 558

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/296 (20%), Positives = 112/296 (37%), Gaps = 22/296 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRSFLNSAETHLQRQVILEAKILEV 298

Query: 206 RRDILKQIGFQHS---ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                 Q G Q         ++  +    A   G  V+          +    F T+++ 
Sbjct: 299 TLSDDFQQGIQWENVLGHVGNTNINFGTTAGTVGNKVTSTLGGVTSLSIKGSDFTTMINL 358

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDY 312
           L+    +  L+ P +TA + Q A    G    + T  S          +T    +T    
Sbjct: 359 LDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTPVTTPQVELTPFFS 418

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELP 363
           G+ L  TP +   G + L +   V +         + +           +R++DT +   
Sbjct: 419 GIALDVTPQIDKDGNVLLHVHPSVIDVKEQTKNIKVSNESLELPLAQSEIRESDTVIRAA 478

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           SG  +V+ GL+K +  ++   +PLL  IP+LG LF+N    +++TE+ I   P +V
Sbjct: 479 SGDVVVIGGLMKSENVEVVSQVPLLGDIPLLGELFKNRSKQKKKTELIILLKPTVV 534


>gi|237728710|ref|ZP_04559191.1| type II secretion system protein [Citrobacter sp. 30_2]
 gi|226909332|gb|EEH95250.1| type II secretion system protein [Citrobacter sp. 30_2]
          Length = 415

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 80/429 (18%), Positives = 159/429 (37%), Gaps = 34/429 (7%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
               ++  + +    +      K  N  ++          + ++    K +++       
Sbjct: 1   MKRWIAWIVIALAVGITSALATKPQNVTLVVDDVPVTQVLQALAEQEQKNLVVS------ 54

Query: 68  DVLVSDPTKADVVVHS------PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
                 P  + V+          + +    K+ G    +++  +G  +    +  + + A
Sbjct: 55  ------PDVSGVLSLHLTDVPWKQALQTVVKSAG----LVLRQEGNILHVHSVQWQSENA 104

Query: 122 H----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
                 +  ++  +      I +       +     + +           T       N 
Sbjct: 105 ARQDNEQTRIQASLPLEQRSIILHYADAAELAKAGEKLLSAKGSMTVDKRTNRLLLRDNS 164

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
            A ++ +K ++ +++    QV L   I  +    L+++G + S+  +    +        
Sbjct: 165 VALNTLEKWVSQMDLP-VAQVELAAHIVTINEKSLRELGVKWSLADAQQSGAVGNVTTLA 223

Query: 236 GKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                      V    G ++    E  L ALE+   +  +A P L A   Q AS   G +
Sbjct: 224 SDLSVATATSRVGFNIGRINGRLLELELSALEQKQQLDIIASPRLLASHLQPASIKQGSE 283

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ--TEVSEPVIGVNAGDMPS 350
             Y+  S  +GATSV   +  + +  TPTVL  GRI L++     V   V+    G++ +
Sbjct: 284 IPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLA 343

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++ +T VE+ SG TI L G+     +   + +PLL  IP LG+LFR+     E  E+
Sbjct: 344 IDKQEIETQVEVKSGETIALGGIFSHKNKSAADSVPLLGDIPWLGSLFRHDGKEDERREL 403

Query: 411 FIAATPFLV 419
            +  TP LV
Sbjct: 404 VVFITPRLV 412


>gi|296135153|ref|YP_003642395.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
 gi|295795275|gb|ADG30065.1| type IV pilus secretin PilQ [Thiomonas intermedia K12]
          Length = 752

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/360 (18%), Positives = 120/360 (33%), Gaps = 55/360 (15%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN- 174
             +  A +   L      +          V+L G+  +   + R +    T L+    N 
Sbjct: 393 NYQKAATVVAMLTGAAGGAQSGTTATPSPVLLPGLSSSAAPTSRILSPRGTVLADPRTNQ 452

Query: 175 ---QYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI---------- 219
                  S  ++V  L+    +   QV ++  I E      + +G +             
Sbjct: 453 IFVTDIPSKLEEVAQLIAKIDKPVRQVMIEARIVEASDQFGRSLGVKLGFLDARGIQGGV 512

Query: 220 -----TGSSSG-------------------------------PSKSFAADFGGKFVSEGG 243
                 G + G                               P+   A            
Sbjct: 513 PGTNLVGGTYGTVSGDYLGVANQTNQPGSSAATLADSQFVNLPAFGLAGSLLAGAAPSSL 572

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             S+            L A+E     + ++ P +       A+   G +  Y+  +SS G
Sbjct: 573 GISLFNAAANRFINLELSAMEADGKGKIISSPRVITADLSKATIEQGTEIPYQQATSS-G 631

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
           AT+VT     + L  TP +   G + +    E+ +   G +   +PS       T V++ 
Sbjct: 632 ATAVTFKKAVLSLDVTPQITPDGNVIM--NVEIHKDSPGASTAGVPSINTNTVTTQVQVE 689

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +GGT+VL G+     Q   + +PLL  IP+LG LF+N+     + E+ +  TP +V    
Sbjct: 690 NGGTVVLGGIYTSQEQNQTDKVPLLGDIPVLGNLFKNNSKMYNKNELMVFLTPKIVTNAD 749


>gi|187476847|ref|YP_784871.1| general secretion pathway protein D [Bordetella avium 197N]
 gi|115421433|emb|CAJ47938.1| general secretion pathway protein D [Bordetella avium 197N]
          Length = 860

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 110/308 (35%), Gaps = 31/308 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-------------AADFGGKF 238
              QV ++  I EV  D   + G Q      +   + +                      
Sbjct: 413 RRAQVLVESMIVEVSEDKASEFGIQWMTGAGNINSNSTSFIGGTNLGGSGLGGVQGPTSL 472

Query: 239 VSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              G   S+  V            +   +  A+++      L+ P L  +  QSAS   G
Sbjct: 473 DVLGKGLSLGVVKGTVDVLGNKVINLGVLARAMQKDGEANILSTPNLLTLDNQSASILVG 532

Query: 291 GQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
               + T          SS    ++   D G+ L+  P +   G + L I  EVS     
Sbjct: 533 KTVPFVTGQYVTSGGNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQEVSSIDTS 592

Query: 343 VNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +          R  DT+V +  G  IVL GLL+D + Q   G+P LS IPILGALFR  
Sbjct: 593 NSTAVSGVVTNKRAIDTSVLVEDGQIIVLGGLLEDSVSQGANGVPGLSSIPILGALFRYD 652

Query: 402 RFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
                +T + +   P++V+    R  S   D Y      +A      + +    +  E+ 
Sbjct: 653 SRRHTKTNLMVFLRPYVVRD-NRRAASLTMDRYDYMRRQQAASQPEAHWLLPQVQTPELT 711

Query: 462 GQNYKGAI 469
               +G++
Sbjct: 712 PPGSRGSV 719


>gi|84390819|ref|ZP_00991511.1| fimbrial assembly protein [Vibrio splendidus 12B01]
 gi|84376622|gb|EAP93499.1| fimbrial assembly protein [Vibrio splendidus 12B01]
          Length = 564

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++D +   G V  + D         T        +   +  + ++  L+I  + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
            ++  I  V    L ++G +  +                           G +S      
Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371

Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             + G    +     F V  +      +  L AL++ +    ++ P L   + + A    
Sbjct: 372 NVNLGATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S  N  +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPVLGALFRRSYENVGK 550

Query: 408 TEIFIAATPFLV 419
           +E+ I  TP +V
Sbjct: 551 SELLIFVTPKVV 562


>gi|148977866|ref|ZP_01814421.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
 gi|145962935|gb|EDK28206.1| MSHA biogenesis protein MshL [Vibrionales bacterium SWAT-3]
          Length = 549

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 114/310 (36%), Gaps = 34/310 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  +++  + +A  +    F  +    +     S++ +         Q
Sbjct: 223 QLEAAVAHLIGSGNGQSVVVTPQASVITVRAFPDEIREVREFLGVSQQRLQR-------Q 275

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250
           V L+  I EV      Q GF  S    S G                    S+ G      
Sbjct: 276 VILEAKIMEVTLSDGYQQGFSWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 335

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
           +   SFE VL  ++    +  L+ P +TA + Q A    G    Y T  SS         
Sbjct: 336 ISDGSFEAVLSFMDTQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLSSAVGSGDNAN 395

Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------VIGVNAGDMPS- 350
                 +T    G+ L  TP +   G + L +   V E                 ++P  
Sbjct: 396 VAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEKEVKKLNLGSTTGVVELPLA 455

Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE
Sbjct: 456 KSSIRESDSVIRARDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 515

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 516 LVILLKPTVV 525


>gi|332139923|ref|YP_004425661.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
 gi|327549945|gb|AEA96663.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Alteromonas macleodii str. 'Deep ecotype']
          Length = 547

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 61/266 (22%), Positives = 108/266 (40%), Gaps = 24/266 (9%)

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS------ 229
            +   ++K +N L+I  + QV ++  +  V  D+ +Q+G +   +        S      
Sbjct: 280 ASIDEARKTINALDIPVK-QVLIESRMVTVLDDVDEQLGVRWGFSDRQDDNGISGSIEGA 338

Query: 230 --------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                            +      +    F +  ++D    +  L ALE       +A P
Sbjct: 339 DTIAGGVVPSIENRLNVNLPVSSAAGSIGFQIASLVDGTILDLELSALESENKGEIIASP 398

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQ 333
            +T  +   A    G +  Y   +SS GATSV      + L  TP +    RI L   + 
Sbjct: 399 RITVANQHEAYIEQGTEIPYVQATSS-GATSVEFKKAVLSLKVTPHITPDNRIILDLVVT 457

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +     +  + GD  +   ++  T V + +G TIVL G+ +         +PL   +P+
Sbjct: 458 QDTRGETVTTSTGDAVAIDTQEIKTQVLVENGETIVLGGIFQQTSSDGVSKVPLFGDLPL 517

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           +GALFRNS   +++ E+ I  TP +V
Sbjct: 518 VGALFRNSSQLQQKRELLIFVTPKIV 543


>gi|261365347|ref|ZP_05978230.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
 gi|288566287|gb|EFC87847.1| type IV pilus biogenesis protein PilQ [Neisseria mucosa ATCC 25996]
          Length = 711

 Score =  173 bits (438), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 108/271 (39%), Gaps = 30/271 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS--------ITGSSSGP-------- 226
           K++  L++    QV ++  I E +    + +G +            G+S           
Sbjct: 440 KLIEELDVPTR-QVMVEARIVEAKDGFSRDLGVKFGVAGSKGRNAWGNSWSNAQDNHNTN 498

Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                      + S   +      +   + ++   L   +    + A E     +T++ P
Sbjct: 499 SAVLRGDANYPTWSLQPNISLPAAAATNNIALVRALSSGALGLEISASEATGKSKTISNP 558

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A+  SG +  Y+   SS+GATSV+     + L  TP V   G++ + ++  
Sbjct: 559 RVLTQDRREATIESGTEIPYQEA-SSSGATSVSFKKAVLGLTVTPNVTPDGQVIMTVKIT 617

Query: 336 VSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
              P    V++      + +  +T   +  GGT+++ G+ ++D       +PLL  +P++
Sbjct: 618 KDTPQDCTVDSLITKCIQTKNLNTQAMVEDGGTLIVGGIYEEDNSDTINKVPLLGDLPVV 677

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G LF++     E  E+ +  TP ++  V   
Sbjct: 678 GNLFKSRAKKEERRELLVFITPRIMDGVGSN 708


>gi|163751641|ref|ZP_02158861.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
 gi|161328467|gb|EDP99622.1| type IV pilus biogenesis protein PilQ [Shewanella benthica KT99]
          Length = 681

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 60/280 (21%), Positives = 110/280 (39%), Gaps = 25/280 (8%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +    + +   +    + + V  L+ +      QV ++  +  V+ ++ + +G Q  IT 
Sbjct: 399 AVDDRTNTLLVRDTEETLENVHRLIEVLDIPIRQVLIEARMVTVKDNVSEALGIQWGITD 458

Query: 222 SSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                  S                           +  S    F V  + D    +  L 
Sbjct: 459 QQGDYGTSGSLRGAQSIANGIIPALADRLNVALPARAGSASIAFHVARLADGTILDMELS 518

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE+      +A P +   S Q A++   G  +    SSS+GAT+V+     + L  TP 
Sbjct: 519 ALEQENRGEIIASPRIVT-SNQKAAYIEQGVEIPYIESSSSGATTVSFKKAVLSLRVTPH 577

Query: 322 VLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +    R+ L ++        V+    G+  S   ++  T V +  G TIVL G+ + ++ 
Sbjct: 578 ITPDNRVILDLEITQDSQGAVVATPMGEAVSIDTQRIGTQVLVNHGETIVLGGIYQQNLI 637

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +P+L  IP LG LFR++  + E  E+ I  T  ++
Sbjct: 638 SRVTKVPILGDIPFLGFLFRSTSDSNERQELLIFITAKII 677


>gi|209520029|ref|ZP_03268806.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
 gi|209499514|gb|EDZ99592.1| type IV pilus secretin PilQ [Burkholderia sp. H160]
          Length = 569

 Score =  173 bits (438), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238
               QV ++  I E      + +G + S+ G+S+  +    +                 F
Sbjct: 329 RPTRQVLIEAQIVEGDHGFSRNLGVRLSLAGTSADGTSKGLSGGADGTVYDLSARPISGF 388

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE     + ++ P +       A    G +  Y+  
Sbjct: 389 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 447

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T
Sbjct: 448 KVGQGISGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGAQTDAGPAINTKHVQT 505

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+ +   +   E +P+L KIPILGALFR+   +   +E+ +  TP +
Sbjct: 506 RVEVEDGGTVSIGGIYETSDRDDVERVPILGKIPILGALFRDRTHSDTRSELAVFITPRV 565

Query: 419 VK 420
           V+
Sbjct: 566 VR 567


>gi|295677888|ref|YP_003606412.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
 gi|295437731|gb|ADG16901.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1002]
          Length = 572

 Score =  173 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 97/242 (40%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------GKF 238
               QV ++  I E  +   + +G + S+ G+S+  +                      F
Sbjct: 332 RPTRQVLIEAQIVEGEQGFSRNLGVRLSLAGTSADGTSRGLTGGTDGTVYDLSARPISGF 391

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +     ++            L ALE     + ++ P +       A    G +  Y+  
Sbjct: 392 DAATAGLTLFAAHATRLLNIELSALESEGHGKIVSSPRVVTADRMKAIVEQGTELPYQ-A 450

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
               G + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T
Sbjct: 451 KVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQT 508

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            VE+  GGT+ + G+ + D +   E +P+L KIP+LGALFR+       +E+ +  TP +
Sbjct: 509 RVEVEDGGTVSIGGIYETDDRDDVERVPVLGKIPVLGALFRHRTHRDTRSELAVFITPRV 568

Query: 419 VK 420
           V+
Sbjct: 569 VR 570


>gi|261254112|ref|ZP_05946685.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
 gi|260937503|gb|EEX93492.1| type IV pilus biogenesis protein PilQ [Vibrio orientalis CIP
           102891]
          Length = 563

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 114/302 (37%), Gaps = 21/302 (6%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++  +   G +  +           T        Q      +++++ L+I  + QV
Sbjct: 262 KASEIASMIGGEGAISMLSSRGALSVDERTNALLIRDLQPNIDVIQELISALDIPVK-QV 320

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------ADFGGKFV 239
            ++  I  V    L ++G +     ++   S   +                         
Sbjct: 321 QIEARIVTVHEGNLDELGVRWGYHNTNGSTSLGSSIEDNVFGAVPIDDMLNVNLAATSVN 380

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +    F V  +      +  L AL+R +    ++ P L   + + A    G +  Y    
Sbjct: 381 ASSIAFQVAKLGSDMLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTEIPYLES- 439

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKAD 357
           SS+GATSV      + L   P +    R+ L +      P   +    G+  +   ++  
Sbjct: 440 SSSGATSVAFKKAVLSLKVVPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAINTQRIG 499

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G T+VL G+ +  +    + +P+L  +P+LGALFR +     ++E+ I  TP 
Sbjct: 500 TQVLVDNGETVVLGGIFQHSVTDAVDKVPMLGDLPLLGALFRRTYQKMGKSELLIFVTPK 559

Query: 418 LV 419
           +V
Sbjct: 560 VV 561


>gi|15595882|ref|NP_249376.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|218893357|ref|YP_002442226.1| putative type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
 gi|9946565|gb|AAG04074.1|AE004503_12 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
 gi|218773585|emb|CAW29399.1| probable type II secretion system protein [Pseudomonas aeruginosa
           LESB58]
          Length = 803

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       + G
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 529

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 530 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 650 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737


>gi|307132897|ref|YP_003884913.1| putative fimbrial transporter [Dickeya dadantii 3937]
 gi|306530426|gb|ADN00357.1| predicted fimbrial transporter [Dickeya dadantii 3937]
          Length = 417

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 76/430 (17%), Positives = 145/430 (33%), Gaps = 31/430 (7%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           MM +F      +    P     +   +      +   +++++ +   +   V        
Sbjct: 1   MMLLFSCMLVEARGDEPVSLAFDDVPVQRVLQALADHQQLNLVVAPGVTGNVS------- 53

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ-MLNLDILIERDIAHLEMTLRR 129
                  ++     +        +GQ  +                  +R    L    R+
Sbjct: 54  ------LNLQQVPWQQALDIILRMGQLTIERQDSVMMVYPDTYMKDRQRQQEELAAKQRQ 107

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +   N+ V +          V T   SQR   L+E       +          V  L  
Sbjct: 108 QLPLQNLSVTL---QYAEAADVATSLQSQRGTLLTERGSVTVDKRTNTLLVRDVVSALEQ 164

Query: 190 IAG--------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           I            QV L   I  +  + LK +G    +  +++        +F      E
Sbjct: 165 IRPWLGELDKPLAQVQLAAHIVTISSEHLKALGVNWGLGDATTTGQALQMNNFSVSLPVE 224

Query: 242 GGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               +       L+    +  L ALE+   +  +A P L     Q+AS   G +  Y+  
Sbjct: 225 SPAVNAGFHLAKLNGRLLDLELMALEQENEVEIIASPRLFTAHQQTASIKQGTEIPYQVS 284

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRK 355
           S ++G+TS+   +  + +  TP +L  G+I L +    + P   +      ++ +   ++
Sbjct: 285 SGASGSTSIEFKEAVLGMEVTPRILHGGQITLNLLISQNMPGRAIKQGEGSEILAIDKQE 344

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V +  G TIVL G+ +    Q +  +P LS +P +G  FR+        E+ I  T
Sbjct: 345 IQTQVTVLDGETIVLGGIFQQQKNQGERQVPGLSALPGIGQWFRSGNQQHTRRELVIFIT 404

Query: 416 PFLVKPVAMR 425
           P L++     
Sbjct: 405 PTLIQSARRA 414


>gi|170731725|ref|YP_001763672.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
 gi|169814967|gb|ACA89550.1| type IV pilus secretin PilQ [Burkholderia cenocepacia MC0-3]
          Length = 543

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 73/459 (15%), Positives = 146/459 (31%), Gaps = 57/459 (12%)

Query: 6   RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
           R     +     ++ P++   P      A + +    + G         +    + + + 
Sbjct: 68  RAARAALQTESTAAAPTLEGPPIPLAPPARMSDAMARQPGDA-------DDARRISLNLQ 120

Query: 66  VQDVLVSDPTKADVVVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAH-- 122
              +  +    A     +     + G+ V G   + L     ++  +  +          
Sbjct: 121 GVGLAAAFDAIARFTGLN----IVVGEQVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRR 176

Query: 123 ----LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGR 173
                        A    R EM +    L  +           +Q    L      Q   
Sbjct: 177 GNVIWVTPAAELAARERERFEMHARAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLL 236

Query: 174 NQYANSSSKKVMNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGF 215
           ++   +++    NLL +                      QV ++  I E  +   + +G 
Sbjct: 237 SKRGAAAADPRTNLLFVTDLAPRITQIAGLIEAIDRPSRQVRIEARIVEGEQGFSRNLGA 296

Query: 216 QHSITGSSSGPSK-------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           + ++      PS                AA     F +    F++         +  L A
Sbjct: 297 RVALRAQGRPPSAEGTSFTADARNALDLAARPLSGFDAATAGFTLFAAPLSRVLDIELSA 356

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE     + ++ P +       A    G +  Y+      G + V      + L   P +
Sbjct: 357 LEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQI 415

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
              GR+ L +  +V++  +G      P+   +   T VE+ +GGT+ + G+ +   +   
Sbjct: 416 TPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDV 473

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             +PLL KIP LGALFR+     +  E+ +  TP +V  
Sbjct: 474 TRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512


>gi|254253479|ref|ZP_04946797.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124896088|gb|EAY69968.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 549

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 60/308 (19%), Positives = 109/308 (35%), Gaps = 34/308 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVT 197
            +Q    L      Q   ++   +++    NLL +                      QV 
Sbjct: 225 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIASLIDAIDKPSRQVR 284

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
           ++  I E  +   + +G + ++      P    AA                G F +    
Sbjct: 285 IEARIVEGEQGFSRNLGARLALHAQGRPPPGDGAAPATDTRNALDLAARPLGGFDAATAG 344

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 345 LTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 403

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P     GR+ L +  +V++  +G      P+   +   T VE+  
Sbjct: 404 SGVQFRRATLKLEVEPQSTPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 461

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V     
Sbjct: 462 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHQARRDQRSELVVFITPTVVGARCE 521

Query: 425 RDLSRPDD 432
              SR  D
Sbjct: 522 TAGSRDAD 529


>gi|74317457|ref|YP_315197.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056952|gb|AAZ97392.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 656

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 88/470 (18%), Positives = 155/470 (32%), Gaps = 68/470 (14%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVLVSDPTK---- 76
                P   E   A +      I +   ++   +K + L             D       
Sbjct: 177 PAFHKPITLEFRDAPLRNVFDMIARQSGLNFVFDKDVRLDTKATLFARNTPIDEAVDMLL 236

Query: 77  ----ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
                   V +  T+ ++                + M+    L   D       LR  + 
Sbjct: 237 MTGQLSKKVVNANTLLIYPDQP-----QKQKAYQELMVKSFYLGNADAKATMAMLRTLVK 291

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
             ++ V+   + +V+            A+ L+E  ++                       
Sbjct: 292 AKDLHVDERLNLLVMRDTP-------DAIRLAERIVAVQDL------------------A 326

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVKGV 250
           E +V L+V + EV+R  L  +G Q+    S     P+ S     GG   +     SV  V
Sbjct: 327 EPEVMLEVEVLEVKRGRLLDLGIQYPTNFSLLNLPPATSSTIGPGGVVTNTTPPPSVLTV 386

Query: 251 LDRFSFETV---------LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               +             +   ++ + +  LA P +   + + A    G +    T +++
Sbjct: 387 ESLKNITASQIAISPTPGVDLRKQDSDVNILANPRIRVKNREKAKIHIGDKVPVITSNTT 446

Query: 302 TG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRK 355
           +    + SV+  D G+ L   P+VL    + +R+  EVS  V      N         R 
Sbjct: 447 STGVVSESVSYLDVGLKLDVEPSVLMREDVQIRVGLEVSNIVREIRSGNGTLTYQIGTRN 506

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A TT+ L  G T VLAGL+ D+ +     IP L  +P++G LF + R  R +TEI +  T
Sbjct: 507 AGTTLRLKDGETQVLAGLISDEDRSTASRIPGLGDLPLIGRLFSSQRDERNKTEIVLLIT 566

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           P +++           D   +    +  F        G   A        
Sbjct: 567 PRVLR----------SDATRLPALTE--FRGGTENAIGGGGAVPFSAPAL 604


>gi|330810080|ref|YP_004354542.1| type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327378188|gb|AEA69538.1| putative type II secretion pathway protein D precursor [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 786

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 65/269 (24%), Positives = 111/269 (41%), Gaps = 28/269 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q    G+  G       + GG  ++  
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQT-GNLGGSGVIGGVNLGGTGLNLN 511

Query: 243 GDFSVK------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G  S+                   G+      + +  AL+       L+ P L  +  ++
Sbjct: 512 GKTSIDVLPQGLNLGVVNGTVDIPGIGKILDLKVLARALKSKGGTNVLSTPNLLTLDNEA 571

Query: 285 ASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           AS   G    + +         +S+    +VT  + G+ L+  P +   G + L I  EV
Sbjct: 572 ASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEV 631

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           S      ++        R  DT++ L  G  +VL GLL+D   Q  + +P LS IP +GA
Sbjct: 632 SSVDNRASSTTGIVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSTIPGIGA 691

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMR 425
           LFRN R    +T + +   P++++  A  
Sbjct: 692 LFRNERRQITKTNLMVFLRPYIIRDTAAG 720


>gi|91776764|ref|YP_546520.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710751|gb|ABE50679.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 657

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 83/461 (18%), Positives = 156/461 (33%), Gaps = 74/461 (16%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV----SDPTKA 77
                P   E   A I +    + +   I+  L+K I    P     V +     D    
Sbjct: 177 PAFNKPVSLELRDANIKMVFEALSRATGINFILDKDIK---PETKATVFIKKSPVDEAIE 233

Query: 78  DV--------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
            V         V S  T  +F     +     +      ++    L       +   ++ 
Sbjct: 234 MVLATNGLQKKVLSENTALVFPNTAAK-----LKDYQDLVIRNFYLTNAKAKDVSTMIKT 288

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +   ++  +   + +V+             V ++E  ++ +                  
Sbjct: 289 MLKTKDVHTDERLNMIVIRDTP-------EVVRIAEKLVAANDL---------------- 325

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
              + +V L++ + EV R+ L+++G  +           S  A  G    +   + S   
Sbjct: 326 --ADPEVMLEIEVMEVSRERLQELGIDYP---------TSLTASAGLSIDAMRSNNSGTY 374

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306
           + +       L+  +    I  LA P +   +   A    G +    T  ++ G   + S
Sbjct: 375 LFNS---NPTLNFRKTTGDINILANPRIRVRNNDKAQVLVGDKVPVITTVATAGVGSSQS 431

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELP 363
           V   D G+ L   P +     + ++I  EVS           G +     R A T + L 
Sbjct: 432 VQYLDVGLKLEAEPRITLDDFVNIKIALEVSSLGSSTTLNGGGVVYQIGTRNASTLLRLK 491

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T +LAGL+ D+ ++    +P L  IP+LG LF N   NR++TEI +A TP +V  ++
Sbjct: 492 DGETQILAGLINDEERRNTSRLPGLGDIPLLGRLFSNQTDNRKKTEIVLAITPHVVNNIS 551

Query: 424 MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                        E +   ++    N I    + +      
Sbjct: 552 -----------RPESEVLEYWSGTENGISDHPQINVPGTGA 581


>gi|186897240|ref|YP_001874352.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           PB1/+]
 gi|186700266|gb|ACC90895.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis PB1/+]
          Length = 500

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 113 PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 168

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 169 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 224

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 225 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 280

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 281 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 339

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 340 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 399

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 400 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 459

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 460 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 500


>gi|222111308|ref|YP_002553572.1| type II and iii secretion system protein [Acidovorax ebreus TPSY]
 gi|221730752|gb|ACM33572.1| type II and III secretion system protein [Acidovorax ebreus TPSY]
          Length = 356

 Score =  173 bits (437), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 142/342 (41%), Gaps = 20/342 (5%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            +G Q+     +     A   M LR+ ++ D  I V  V D VVL GM      + +  +
Sbjct: 5   RNGTQINYEVTVSADHHAKTAMELRQLLSHDKGINVSAVGDKVVLDGMYANQDSAAKIQK 64

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           + + +       +              +  E  V L V + EVR+  L  IG + S  G 
Sbjct: 65  IVKAYPQVLNLVRERPEDQ-------LVVPEQMVQLDVKVVEVRKQALDNIGVKWSNLGV 117

Query: 223 SSGPSKSFAADFGGKF-----------VSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           +     +    +               ++      +  +       +VL+ LE      T
Sbjct: 118 AGPTFATSGYFYANSANFRGLNQEGYPITTPARPFISYLGLATQITSVLNFLESNGDSWT 177

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LAEP ++++SG S+    GG+     VSS  G  SV    YGV+L F P +   G +   
Sbjct: 178 LAEPRISSVSGGSSKVQVGGEIPIP-VSSGFGQLSVVYKPYGVILEFKPVIDKAGNVRSS 236

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I  EVS+P      G   ++   + +T V L    T+V++GLLK    + KEGIP++ + 
Sbjct: 237 IVAEVSQPDRSAGQGQFVAFTTNRTETEVSLKQNETLVISGLLKSVGARNKEGIPVIGRA 296

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           P+LG LF       E+TE+ +  TP +  P A R      ++
Sbjct: 297 PVLGRLFSTQEMTNEQTEMLVVVTPRIHTPAADRAQVLASEN 338


>gi|160873279|ref|YP_001552595.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|160858801|gb|ABX47335.1| general secretion pathway protein D [Shewanella baltica OS195]
 gi|315265506|gb|ADT92359.1| general secretion pathway protein D [Shewanella baltica OS678]
          Length = 705

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 62/304 (20%), Positives = 108/304 (35%), Gaps = 46/304 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAS 373

Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
                    +     G                                          + 
Sbjct: 374 KSGLGTQFNNLGPTIGEIGAGIWQAQDVKASQTCTGSGDNQTCTDNPDTKGDVTLLAQAL 433

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YK 296
           G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +         
Sbjct: 434 GKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTA 493

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           + S+S    +V   + GV L   P +     + L I+ EVS            S+  R+ 
Sbjct: 494 SSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRRL 551

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV   SG  +VL GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I   P
Sbjct: 552 TTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIKP 611

Query: 417 FLVK 420
            +++
Sbjct: 612 TIIR 615


>gi|254487874|ref|ZP_05101079.1| general secretion pathway protein D [Roseobacter sp. GAI101]
 gi|214044743|gb|EEB85381.1| general secretion pathway protein D [Roseobacter sp. GAI101]
          Length = 644

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 76/414 (18%), Positives = 149/414 (35%), Gaps = 33/414 (7%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
           +      I E        + + +     + +       +     +   + + P  A    
Sbjct: 200 AGTVATAISEVLGPAGTGARLSVDVSSNVLLVRGTQRDISQIRSLARAMDTSPRVAQSET 259

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
            S     ++    G+A ++          + D+        +  +L    A+ + +    
Sbjct: 260 VSTS---IYRLQFGEATIVADLVRNTLTGSTDL-----TNPVAASLGEDPANPDAQSFG- 310

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
                  G               ET        Q   +   +++  L++    QV ++  
Sbjct: 311 ------SGPDAAPISPVSVQASIETNSVIVRGTQRQLAEVSQLIKALDVRRP-QVMIEAA 363

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------SEGGDFSVKG 249
           I EV  D+ +++G Q  I  ++   S +  +   G               +      +  
Sbjct: 364 IVEVSGDVAERLGVQLGIGENTETGSIAATSFGNGGGSLQNVLVALGQSNAAALSTGLSV 423

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGAT 305
            L   SF  ++ AL  +T+   L+ P++T +  QSA+   G    ++T          A 
Sbjct: 424 GLASDSFGALIQALNTSTSANLLSTPSVTTMDNQSATIVVGQNVPFRTGRLTTDGGNVAE 483

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
            +   D G+ +   P + + G + L I+ EVS      V          R  +TTV   +
Sbjct: 484 VIEREDVGITMVVKPRITAGGVVQLEIEQEVSSLTNQAVTGAADLVTNRRVINTTVLAEN 543

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           GGT+VL GL+ DD  Q  + +PLL  +P+LG LF++   +R +  +F+   P +
Sbjct: 544 GGTVVLGGLITDDRLQNNQKVPLLGDVPVLGNLFKSRNNSRSKRTLFVFLRPTI 597


>gi|17548364|ref|NP_521704.1| putative GSPD-related protein [Ralstonia solanacearum GMI1000]
 gi|17430610|emb|CAD17294.1| putative gspd-related protein [Ralstonia solanacearum GMI1000]
          Length = 754

 Score =  173 bits (437), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 81/427 (18%), Positives = 156/427 (36%), Gaps = 55/427 (12%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  +  + P   E   A +      + +   ++   +K   ++    V  V + + T A+
Sbjct: 176 ALSAAFRKPISLEFRDAQMRQVFEVLSRASGLNFVFDKD--VRTDQKV-TVFLRNSTVAN 232

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           VV            V    ++ ++     +             +   +L   D   +  T
Sbjct: 233 VVNTVLLTNQLEQRVLDGNSILIYPNTPAK-----QRDYQPLTVRTFVLSNSDAKDVANT 287

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           ++  +   +I V+   + +V+      IQ +++ V + E                     
Sbjct: 288 VKTILKTRDIVVDEKRNMIVMRDTPDAIQAAEKLVAVHEM-------------------- 327

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                 E +V L+V I EV+R  L+ +G Q     S +  + S         +       
Sbjct: 328 -----PEPEVMLEVEILEVKRSRLQDLGIQLPSQLSLTPLASSSGGTLTLDDLRHLNPTR 382

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
           +   +   +    ++A         LA P +   + + A    G +    T +S+     
Sbjct: 383 IGATVSPLNVN--VNAAVTD--TNVLANPRVRTRNKEKARIQVGQRVPNVTTTSTATGFV 438

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
           A +V   D G+ L   PTV     + +RI  EVS+    V   +         R A T +
Sbjct: 439 AENVQYVDVGLKLEVEPTVTPDNEVTIRINLEVSDIISQVQTKSGSIAYEIGTRNATTLL 498

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G   +LAGL++D+ +     +P L  IP LG LF     N+ ++EI ++ TP +++
Sbjct: 499 RLKDGENQILAGLIQDEDRVSGNRVPGLGDIPALGRLFGAQSDNKLKSEIVLSITPRVIR 558

Query: 421 PVAMRDL 427
           P    +L
Sbjct: 559 PAQRPNL 565


>gi|188997001|ref|YP_001931252.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188932068|gb|ACD66698.1| type II and III secretion system protein [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 602

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 97/248 (39%), Gaps = 20/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238
              Q+ ++  I +V    LK +G Q   + ++   + +     GG               
Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGSATNIDNNNTKIITGGGSTSVISGGRYAVDFP 412

Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               +  G F++  V        +  L AL+     + L++P +  I G++A  + G + 
Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGRSKILSKPQIVTIDGETAEISQGYEV 472

Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
            Y T  ++ G T  SV+     + L+ TP   + G I + I      P         P  
Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDIIITQDIPDFKNLILGNPPI 532

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + +   + V    G  I + G+L+        G+P L  IPILG LF+ +    +  E+ 
Sbjct: 533 QTKTVTSKVVAKDGSVIAIGGILEKTEDLKDSGVPGLMNIPILGYLFKENYKQEKTNELL 592

Query: 412 IAATPFLV 419
           I  +P +V
Sbjct: 593 IFLSPRIV 600


>gi|153870872|ref|ZP_02000179.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
 gi|152072664|gb|EDN69823.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           PS]
          Length = 698

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 58/363 (15%), Positives = 125/363 (34%), Gaps = 37/363 (10%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + +G   +I +  +  +    ++  ++ I  LE     FI  +  + + +   +   G  
Sbjct: 336 RKIGNVAMIDLKKNIDERKQRELSNKKKIKELESLYTEFIRINYAKAKDIEALLRTSGQH 395

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
             +           T            +  +K++  L+     QV ++  I     +  K
Sbjct: 396 SFLSSRGNVSTDERTNTLIIQDTAAKIAEIRKLLAELDTPVR-QVLIESRIVIANNNFSK 454

Query: 212 QIGFQHSITGS----------------------------------SSGPSKSFAADFGGK 237
            +G +   + +                                    G  ++F       
Sbjct: 455 ALGVKFGYSANEDLGFGNGIVFGGKKGGDTTFSGGTGFSSDNTATGEGQGENFIVSLPAA 514

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +        G +  +  +  L A++   +   ++ P +   + Q A  T G +  Y  
Sbjct: 515 IANPAAVGLAIGKIGSYLLQLELSAMQSEGSGEIISNPRIITGNQQEAIITQGTEIPYVQ 574

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            +       V      + L  TP +    R+ + +   V +   GVN G   S   R+  
Sbjct: 575 QAGVGSVAQVQFKQAVLELKVTPQITPDDRVNMELA--VKKDSPGVNIGGNLSIDKREVK 632

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G T+VL G+ +         IP  + +P++G LF+N   + +++E+ I  TP 
Sbjct: 633 TNVLVDNGETVVLGGVYERTRSNAINRIPFFADLPLIGELFKNRSKSDDKSELLIFVTPK 692

Query: 418 LVK 420
           ++K
Sbjct: 693 ILK 695


>gi|260771969|ref|ZP_05880886.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
 gi|260612836|gb|EEX38038.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio metschnikovii CIP 69.14]
          Length = 663

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 104/281 (37%), Gaps = 46/281 (16%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------- 223
           V++ L+I    QV ++  I E+       +G Q                           
Sbjct: 323 VISQLDIR-RAQVLIEALIVEMAEGDGINLGVQWGSLKDGAVIQYGNSGAQVGQVMVGLE 381

Query: 224 -------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                                 + +   D+     +  G       +    +  ++ A+ 
Sbjct: 382 QAKDTTESRAVYDRDGNFLRNETTTKKGDYSTLASALSGVNGAALGVMMGDWTALISAVS 441

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
             ++   L+ P++T +    ASF  G +    T      ++     +V   + G+ L   
Sbjct: 442 STSSTNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNDNPFQTVERKEVGIKLKVV 501

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS  +    A D+  +  R+ +TTV +  G  +VL GL+ +   
Sbjct: 502 PQINEGDSVQLSIEQEVSNVLGAQGAVDV-RFAKRQLNTTVMVQDGQMLVLGGLIDERTA 560

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +  +P+L  IP+LG LFR++    E+  + +   P +++
Sbjct: 561 ESESKVPILGDIPLLGYLFRSTNTTVEKKNLMVFIKPTIIR 601


>gi|218782965|ref|YP_002434283.1| general secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
 gi|218764349|gb|ACL06815.1| General secretion pathway protein D [Desulfatibacillum alkenivorans
           AK-01]
          Length = 716

 Score =  172 bits (436), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 64/350 (18%), Positives = 131/350 (37%), Gaps = 43/350 (12%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQS 171
            + ++   A   + + + +       +  ++  V+   V+ +   +  ++ +        
Sbjct: 324 VVYLQNATAEEVVKVLQALPGKQTDTKNKAEAPVVSKDVQISADKATNSIIIVA------ 377

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---- 227
             ++      K V+  L+I     V ++  I EV  D   ++G +  +  +         
Sbjct: 378 --DKEDFKVLKDVIEKLDIP-RSMVYIEALIMEVSTDKAFELGVEWRLGDNFEVNGDQAV 434

Query: 228 ----------------KSFAADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHAL 263
                               A+           FS+  + +          +   V+ A 
Sbjct: 435 GWAGSGGAGSEGAYTLFPTTAEIASGVAGFPTAFSMGVIGENIKIGDIYFPTLGAVMRAY 494

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLHFT 319
           +  + +  L+ P + A + + +    G    Y T   ++      TS    D GV L  T
Sbjct: 495 KNDSDVHILSAPHILATNNEESEIYVGKNVPYVTRQDTSSSSVDYTSYEYRDVGVTLKIT 554

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L +  EV+  +        P+   RKADTTV +  G TIV+ GL+ +  +
Sbjct: 555 PQISQERLVRLDVFQEVTRLIETAGTTTQPTTYKRKADTTVIVKDGNTIVIGGLIDESTE 614

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
                +P L  IP LG  FR+    RE+T +++  TP +++ P   +++S
Sbjct: 615 GGTYKVPCLGDIPWLGWAFRSKTEKREKTNLYVFLTPRIIQTPTEAKEIS 664


>gi|149377297|ref|ZP_01895043.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
 gi|149358394|gb|EDM46870.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter algicola
           DG893]
          Length = 694

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 56/256 (21%), Positives = 101/256 (39%), Gaps = 32/256 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235
            QV+++  I   + ++ + +G +            S  +  G                  
Sbjct: 437 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVRGDGSVISVGGSQGAVGEARDAANGNNNT 496

Query: 236 -----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                      G        F+V    D F  +  L ALE       +++P +     Q+
Sbjct: 497 ITFPGALAVDLGVTGQGASSFAVGWGSDDFLVDLELSALESDGQAEVVSQPRVVTADRQT 556

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A   SG +  Y+   SS+GATSV+  +  + L  TP +    +I + +   V++   G  
Sbjct: 557 AKIKSGEEIPYQEA-SSSGATSVSFKEAALSLEVTPQITPDDKIIMDLV--VNQDSRGEV 613

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+    +  T V + +G T+VL G+ + ++       P L  IP LG LF+ +   
Sbjct: 614 TAGIPAINTNEVTTQVLVGNGETVVLGGIFQSEVATTTTKTPFLGDIPYLGRLFKRTEHI 673

Query: 405 REETEIFIAATPFLVK 420
            E +E+ I  TP ++K
Sbjct: 674 DERSELLIFITPKIIK 689


>gi|86147328|ref|ZP_01065642.1| fimbrial assembly protein [Vibrio sp. MED222]
 gi|85834893|gb|EAQ53037.1| fimbrial assembly protein [Vibrio sp. MED222]
          Length = 564

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++D +   G V  + +         T        +   +  + ++  L+I  + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
            ++  I  V    L ++G +  +                           G +S      
Sbjct: 312 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 371

Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             + G    S     F V  +      +  L AL++ +    ++ P L   + + A    
Sbjct: 372 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S  N  +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 550

Query: 408 TEIFIAATPFLV 419
           +E+ I  TP +V
Sbjct: 551 SELLIFVTPKVV 562


>gi|296390960|ref|ZP_06880435.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
          Length = 786

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       + G
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720


>gi|194291071|ref|YP_002006978.1| general secretory pathway protein d, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
 gi|193224906|emb|CAQ70917.1| General Secretory Pathway protein D, type II secretion system
           [Cupriavidus taiwanensis LMG 19424]
          Length = 831

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/282 (22%), Positives = 101/282 (35%), Gaps = 39/282 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------- 242
           A   QV ++  I EV      ++G Q     SSS  + +  A        +         
Sbjct: 441 ARRAQVYIESMIVEVTATQASELGIQWQGLISSSSGNNNVFAGTNFGTGGQNILNLTLAG 500

Query: 243 ---------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                G  ++  V        +L AL    ++  L+ P L  + 
Sbjct: 501 ALADSNRSAGIVAAQQLVPDIGGLNLGIVNRAMGLGALLRALGTNGSVNLLSTPNLITLE 560

Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S +        T   +    D G+ L   P +   G + ++I 
Sbjct: 561 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQIF 620

Query: 334 TEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E S  V    N    P+  VR  +T V +  G  IVL GL++D+     + +PLL  IP
Sbjct: 621 QESSNVVQATANLIQGPTTNVRSIETNVLVDDGQIIVLGGLIEDNYGDGVQKVPLLGDIP 680

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +G LFR    NR +T + +   P++++  A        D Y
Sbjct: 681 WIGGLFRYENKNRSKTNLLVFLRPYVMR-TAGATDRLTADRY 721


>gi|217969269|ref|YP_002354503.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
 gi|217506596|gb|ACK53607.1| type IV pilus secretin PilQ [Thauera sp. MZ1T]
          Length = 711

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 91/255 (35%), Gaps = 27/255 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQ--------HSITGSSSGPSKSF------------- 230
              QV ++  I E  +   + +G +          I    +                   
Sbjct: 450 APRQVLIEARIVEANKTFSRDLGVRLGLGKSKPWKINDGGAQIGFGSSTLGGSAGSSGSF 509

Query: 231 ---AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSA 285
               A  G    +  G F++       +      L ALE     R ++ P +   +   A
Sbjct: 510 RPETATSGADIQNPYGSFALSIFNSSVTRFLNLELQALESDGRGRVVSSPRVLTANQVEA 569

Query: 286 SFTSGGQHLYK-TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
               G Q       +   G  +V   D  + L   P++   GRI L +      P     
Sbjct: 570 LIKQGTQIPIPIPSTQVGGEPTVEYKDAVLSLKVRPSITPDGRIQLSVLVNKDRPDFTNV 629

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               PS   +   T V + +GGT+V+ G+ ++     ++ +P+L ++P+LG LFR     
Sbjct: 630 VLGRPSIDTKSVQTEVTVENGGTLVIGGVYEEQELNGEDRVPVLGELPVLGGLFRTRSTI 689

Query: 405 REETEIFIAATPFLV 419
            E+ E+ +  TP LV
Sbjct: 690 AEKKELLVFITPRLV 704


>gi|149909433|ref|ZP_01898088.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
 gi|149807543|gb|EDM67492.1| putative type IV pilus biogenesis protein PilQ (cytoplasmic ATPase)
           [Moritella sp. PE36]
          Length = 747

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 70/336 (20%), Positives = 132/336 (39%), Gaps = 31/336 (9%)

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLS 169
             D++ ++++  L      FI    I      D T +L     ++  S+  V   E   +
Sbjct: 412 RRDLVSKKEVEDLAELHSEFI---QISFAKAGDITKLLSQKDSSLLSSRGTVSFDERTNT 468

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------ 223
              ++     +S K +  +      QV ++  +  V  +I  ++G +  ++GS+      
Sbjct: 469 LLIKDTATVIASVKRIIEVLDVPVRQVIIEARMVSVVDNISDELGIRWGLSGSTDIGSGF 528

Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                      +      +    F + G+ +    +  L ALE 
Sbjct: 529 GLSSGSIEGNDSLAGGSVPAIGDRLNVNLPVASPAGSIAFQIAGLANGQILDLELSALEA 588

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 +A P +T    +SA    G +  Y    SS+GAT++      + L  TP +   
Sbjct: 589 EQKAEVIASPRITTTDKKSAYIEQGTEIPYVES-SSSGATTIAFKKAVLGLWVTPHITPD 647

Query: 326 GRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            +I L ++         +    G+  S   +   T V + +G TIVL G+ K +I+Q+  
Sbjct: 648 NKIILDLKINQDTRGEDVKTVGGEAVSIDTQVISTQVLVENGETIVLGGIFKHEIKQIVT 707

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P+L  IP LG LFR+++   ++ E+ I  TP +V
Sbjct: 708 KVPILGDIPWLGVLFRSTKNISQKRELLIFVTPKVV 743


>gi|126176026|ref|YP_001052175.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217971714|ref|YP_002356465.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
 gi|125999231|gb|ABN63306.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS155]
 gi|217496849|gb|ACK45042.1| pilus (MSHA type) biogenesis protein MshL [Shewanella baltica
           OS223]
          Length = 559

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 64/297 (21%), Positives = 118/297 (39%), Gaps = 23/297 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L  ++    + ++ V   +  L             +  +N      + QV L+  I EV
Sbjct: 239 TLTAIIGDTGNGRQVVVTPQAGLVTIRAFPSELRQVRTFLNSAESHLQRQVILEAKIIEV 298

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLH 261
                 Q G Q        G +        G  +S+    ++ GV         F T+++
Sbjct: 299 TLSDGYQQGIQWDNVLGHVGNTNVNFGTSKGPGLSDKITSAIGGVTSLSIKGSDFTTMIN 358

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHD 311
            L+    +  L+ P +TA + Q A    G    + T  S          +T    +T   
Sbjct: 359 LLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVGGTPPVTTPQVELTPFF 418

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR--VRKADTTVEL 362
            G+ L  TP + S G + L +   V        +  +   + ++P  +  +R++DT +  
Sbjct: 419 SGIALDVTPQIDSDGNVLLHVHPSVIDVKEQTKDIKVSDASLELPLAQSEIRESDTVIRA 478

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            SG  +++ GL+K +  ++   +PLL  IP LG LF+N    +++TE+ I   P +V
Sbjct: 479 ASGDVVIIGGLMKSESIEVVSQVPLLGDIPYLGELFKNRSKQKKKTELIILLKPTVV 535


>gi|313110077|ref|ZP_07795979.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882481|gb|EFQ41075.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 39016]
          Length = 714

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 95/269 (35%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
           ++++ L+I    QV ++  I E      K +G +          +               
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNGYGKDGNIGIKDEDG 496

Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269
                     +F      K  S               +  + D    +  L A+E+    
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  +   +  + +P L 
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
            +P LG LFR    +  + E+ +  TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704


>gi|329900875|ref|ZP_08272624.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327549348|gb|EGF33919.1| General secretion pathway protein D / Type II secretion
           outermembrane pore forming protein (PulD)
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 696

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 104/279 (37%), Gaps = 31/279 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSK 228
           V++ L++    QV ++  I EV      + G Q                + T S+   + 
Sbjct: 359 VIDQLDVR-RAQVYIESLIVEVSAKKAAEFGIQWLGLSGNSTSNYRVGAASTFSTDNIAG 417

Query: 229 SFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
             AA   G   + G   ++     +        +  ALE       L+ P L  +  + A
Sbjct: 418 LAAASKAGTIPAVGAGLTLGVFRQINGALGLGALARALESDDGTNILSMPNLITLDNEEA 477

Query: 286 SFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
               G    + T   +              +V   D G+ L   P +   G + + I  E
Sbjct: 478 RIIVGQNVPFITGQYTTQASGGGSGVNPFQTVERKDVGLQLRVRPQISEGGTVKMAIYQE 537

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            S      N   +     R  DT V +  G  +VL GL++D ++   E +P L  +P++G
Sbjct: 538 TSAVQSSTNTAGI-ITSKRSIDTNVLVDDGQIVVLGGLIEDTLEDGNERVPGLGDLPVVG 596

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            LF+  + NR +T + +   P +++    + LS   D Y
Sbjct: 597 NLFKYQKRNRTKTNLMVFLRPTIIR-SNEQSLSLSGDRY 634


>gi|149195014|ref|ZP_01872107.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
 gi|149134935|gb|EDM23418.1| type II and III secretion system protein:NolW-like protein
           [Caminibacter mediatlanticus TB-2]
          Length = 579

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/244 (26%), Positives = 121/244 (49%), Gaps = 9/244 (3%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--SFAADFGGKFVS- 240
           ++N L+   ++QV +K  I E+      QIG +  +   S   S   + +A+ GG  ++ 
Sbjct: 303 IINALD-TPKEQVYVKARILEISNTKAAQIGNRLGLYAGSGTTSGLYTLSANLGGPAIAF 361

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYK 296
                  ++  +    +    L  LE   A + L+EP++  I+   ++   G     L  
Sbjct: 362 DVASLGLTIPTIKQGIALGATLDLLETYGAAKKLSEPSILCINNTPSTIYVGKTVSVLTG 421

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             +S+T + S T  D G+ L   P + S  ++ L +   + + + G +  +MP    R  
Sbjct: 422 KTTSTTTSESYTRQDIGLTLKVKPRIDSDNKVALNVDAVIEDLLPG-SPVNMPITSKRTI 480

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT  + +G +I++ GL++D+       +PLL  IPILGALFR+ + N+++T + I  TP
Sbjct: 481 NTTTIVRNGQSIIIGGLVRDNKDITLNKVPLLGDIPILGALFRHKQINKDKTTLVIVLTP 540

Query: 417 FLVK 420
           ++VK
Sbjct: 541 YIVK 544


>gi|114564903|ref|YP_752417.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
 gi|114336196|gb|ABI73578.1| pilus (MSHA type) biogenesis protein MshL [Shewanella frigidimarina
           NCIMB 400]
          Length = 556

 Score =  172 bits (436), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/249 (23%), Positives = 103/249 (41%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
            QV L+  I EV      Q G Q       +G +    +   G+ +S     ++ GV   
Sbjct: 285 RQVILEAKIIEVTLSDGYQQGIQWENVLGHAGSTNIDFSTSAGQGLSNAITSAIGGVTSI 344

Query: 251 -LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
                 F T+++ L+    +  L+ P +TA + Q A    G    + T  S         
Sbjct: 345 NFTGSDFSTIINLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTDVSSTTVAGTTP 404

Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352
            +T    +T    G+ L  TP +   G + L +   V +            +  ++P  +
Sbjct: 405 VTTPQVELTPFFSGIALDVTPQIDEYGNVILHVHPSVIDVTSQTKEIKISDSTLELPLAQ 464

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL+K +  +    +PLL  IP LG  F +   ++++TE+
Sbjct: 465 SEIRESDTVIRAASGDVVVIGGLMKSENIETVSKVPLLGDIPFLGEAFTSRTKSKKKTEL 524

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 525 IIMLKPTVV 533


>gi|262375159|ref|ZP_06068393.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262310172|gb|EEY91301.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 754

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 103/268 (38%), Gaps = 31/268 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++ L+I    QV ++  I EV      Q+G Q ++   SSG       +FG    + 
Sbjct: 378 ESAIDQLDIR-RQQVLIEAAIIEVEGTDADQLGVQWALGDISSGIGLVNFDNFGTSLKNI 436

Query: 242 GGDFSV-----------------------KGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +                              R  +  ++ AL+  T    L+ P++ 
Sbjct: 437 AAGYLTGGGAGAASAVGAGSSLVLGDYREGSDGSRRLYGAMIQALKETTKSNLLSTPSIV 496

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +  + A    G    + T S STG        T++   D GV L   P +   G + L 
Sbjct: 497 TMDNEEAYIVVGENVPFVTGSVSTGAAGVANPYTTIERKDVGVTLKVVPHIGEDGTVRLE 556

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           ++ EVS+               R   T++    G TIVL GL+ D+    ++ +P L  I
Sbjct: 557 VEQEVSDVKASKGQAQDLVTSKRAIKTSILAEHGQTIVLGGLISDNTSYGRQAVPGLGAI 616

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P LG LFR+   + ++  + I   P +V
Sbjct: 617 PGLGRLFRSEGKSNQKRNLLIFIHPTIV 644


>gi|254282305|ref|ZP_04957273.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
 gi|219678508|gb|EED34857.1| general (Type II) secretion pathway (GSP) D protein [gamma
           proteobacterium NOR51-B]
          Length = 346

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 97/239 (40%), Gaps = 15/239 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG--------- 243
             QV ++ +I EV        G + +  G   G   +          + G          
Sbjct: 79  PTQVMIEASIIEVTLTDELSYGLEWTFNGQLGGSEYNGVGTLSDGNFNLGSPDSPLGQLA 138

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298
             FS            VL AL   + I  ++ P++  +   +A    G Q          
Sbjct: 139 RGFSYSVTGGSGDIVAVLQALSTQSLINVISSPSVMVLDNNTAYIHVGDQVPIRSGSTVS 198

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +      ++T  D GV L   P+V + G + L ++  V++    ++      +  R+  +
Sbjct: 199 NGGNVTENITYRDTGVKLSVRPSVNAGGLVTLDVEQSVTDVGP-IDVTGNRRFLEREIMS 257

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            V + SG ++VL GL++++    +EG+P L K+P++GALF  +  +   TE+ +  TP 
Sbjct: 258 RVAVRSGESVVLGGLIRENATNSEEGVPWLHKVPLIGALFGTTDKSDTRTELVVMITPR 316


>gi|238792887|ref|ZP_04636517.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
 gi|238727741|gb|EEQ19265.1| Protein transporter HofQ [Yersinia intermedia ATCC 29909]
          Length = 406

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 76/418 (18%), Positives = 162/418 (38%), Gaps = 21/418 (5%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           ++ +    +  +   +P   E + A I +    +   +++++ +   +   + + + DV 
Sbjct: 3   LLVLLTSRAFSAKTGVPVTVEFHDAPITVVLQALADYQQLNLVIAAGVEGNLSLRLADV- 61

Query: 71  VSDP-TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
              P  +A  ++     + +  +  G   ++   H+ ++                 +L  
Sbjct: 62  ---PWEQALAIILRMGRLKV--EREGSVMMVFTEHEMQERRQRAEQKNAPEPLNNFSLAL 116

Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             AD+    E V+D++ L  G + +   S    + + T L +      A   +      L
Sbjct: 117 QYADA----EQVADSLTLPEGGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDL 172

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDF 245
            +    QV L   I  + R+ L+++G +  +  +    S    +F  +      +    F
Sbjct: 173 PL---QQVQLAAHIVTMSREHLQELGVRWGMDDAKQARSLRVNNFNVNLPLPNSALSAGF 229

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           +V  +  R     +  ALE+   +  +A P L     Q+AS   G    Y       G  
Sbjct: 230 NVARIGGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGGP 288

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELP 363
           ++   +  + +  TP +L  G+I L ++   + P + +     +      ++  T + + 
Sbjct: 289 TIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVN 348

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            G TIVL G+ +    Q    +P+L+ IP LGALF+     +   E+ I  TP L+  
Sbjct: 349 DGETIVLGGIFQQKNSQGVNKVPILADIPWLGALFKQDTQQQSRRELVIFITPRLISA 406


>gi|311693369|gb|ADP96242.1| type 4 fimbrial biogenesis protein PilQ [marine bacterium HP15]
          Length = 688

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 53/255 (20%), Positives = 98/255 (38%), Gaps = 31/255 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------------------ 235
            QV+++  I   + ++ + +G +             F                       
Sbjct: 432 RQVSIEARIVRAQTNVAENLGVRWGGAAYDVSGDNVFTVGGSQGSLQEARDAAAGNSNTI 491

Query: 236 ----------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                     G        F++    D F  +  L ALE       +++P +     Q+A
Sbjct: 492 SFPGALAVDLGVSGEGTSSFAIGWGSDNFLVDLELSALESDGQAEVVSQPRVVTADRQTA 551

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           S  SG +  Y+  +SS GAT++   +  + L  TP +    +I + +   V++   G   
Sbjct: 552 SIKSGEEIPYQEATSS-GATNIEFKEAVLSLEVTPQITPDDKIIMDLV--VNQDSRGEVT 608

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +PS       T V + +G T+VL G+ + ++       P L  IP LG +F+ +    
Sbjct: 609 AGIPSINTNSVTTQVLVGNGETVVLGGIFQSEVATQTTKTPFLGDIPYLGRIFKRTEHLD 668

Query: 406 EETEIFIAATPFLVK 420
           E +E+ I  TP ++K
Sbjct: 669 ERSELLIFITPKIIK 683


>gi|77361610|ref|YP_341185.1| mannose-sensitive agglutinin (MSHA) biogenesis protein MshL (pilus
           type IV) [Pseudoalteromonas haloplanktis TAC125]
 gi|76876521|emb|CAI87743.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Pseudoalteromonas haloplanktis
           TAC125]
          Length = 552

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 63/249 (25%), Positives = 103/249 (41%), Gaps = 21/249 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVL 251
            QV L+  I E+      Q G       S  G S SFA   G  G  +S          +
Sbjct: 284 RQVILEAKIIEITLKDEYQQGVNWERISSGLGSSISFATTAGNFGNNLSASLGGVSSLTI 343

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----------VSSS 301
           +R  F  V++ LE    ++ L+ P +TA + Q A    G    + T           +++
Sbjct: 344 ERGDFNGVINLLETQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTNVSSTTVTGTSTTT 403

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYR 352
           +    +T    G+ L  TP +   G + L +   V+E    +    +             
Sbjct: 404 SPEIDLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETQEQLKVITLDDQRFELPLAQSN 463

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +R++DT +   SG  +V+ GL++   Q  +   P+L  IPI G LF+N R  +E+ E+ I
Sbjct: 464 IRESDTVIRAQSGEIVVIGGLMQTSTQDEETKTPILGDIPIFGNLFKNIRKRQEKKELII 523

Query: 413 AATPFLVKP 421
              P +V P
Sbjct: 524 LIRPTVVMP 532


>gi|261856527|ref|YP_003263810.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
 gi|261836996|gb|ACX96763.1| type IV pilus secretin PilQ [Halothiobacillus neapolitanus c2]
          Length = 729

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 45/261 (17%), Positives = 91/261 (34%), Gaps = 35/261 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------- 242
            QV ++  I     +  +Q+G +  +    +  + +F        V+ G           
Sbjct: 459 KQVLIETRIVIATDNFARQLGVRWGVQAGFNRGNSTFGLGSTAPLVASGTSLPTAGASTG 518

Query: 243 --------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                               G   +  +      +  L AL+       ++ P +   +G
Sbjct: 519 TVGTAPTDWMVNTPISGTPAGSLGLAILGSNVLLDLELSALQSEGTGEIVSSPKVITTNG 578

Query: 283 QSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            +A  + G +  Y    ++ G  + +V+     +    TP +     I + I  +  EP 
Sbjct: 579 HTALISQGTEIPYIATQTAGGVASNTVSFKKAVLSTEVTPQITPNNNIIMDIDVKKDEPD 638

Query: 341 IGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P    R+  T VE+ +G T+VL G+ + +       +P    +P +G LF
Sbjct: 639 YTNLLPGTTNPPINTREVKTKVEVKNGETVVLGGIYQFENNNSINKVPFFGDLPGIGNLF 698

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +N     +  E+ I  TP ++
Sbjct: 699 KNKEVKNQRLELLIFVTPKII 719


>gi|152986567|ref|YP_001350166.1| putative type II secretion system protein [Pseudomonas aeruginosa
           PA7]
 gi|150961725|gb|ABR83750.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 803

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 58/268 (21%), Positives = 104/268 (38%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       +  
Sbjct: 471 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVIGGVNFGQSALNTAA 529

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 530 RNSIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 589

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 590 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 649

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 650 SVDERASTVAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 709

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 710 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 737


>gi|237756260|ref|ZP_04584819.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691579|gb|EEP60628.1| type IV pilus secretin PilQ [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 602

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 95/248 (38%), Gaps = 20/248 (8%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------- 238
              Q+ ++  I +V    LK +G Q     ++   + +     GG               
Sbjct: 353 RPYQIAIEARIVQVSTSNLKDLGIQWGGRATNIDNNNTKIITGGGSTSIISGGRYAVDFP 412

Query: 239 ---VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
               +  G F++  V        +  L AL+     + L++P +  I G++A  + G + 
Sbjct: 413 SSSATFPGGFAIGFVFGGLQNFLDVRLSALQSIGKSKILSKPQIVTIDGETAEISQGYEV 472

Query: 294 LYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
            Y T  ++ G T  SV+     + L+ TP   + G I + +      P         P  
Sbjct: 473 PYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLILGNPPI 532

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           + +   + V    G  + + G+L+        G+P L  IPILG LF+      +  E+ 
Sbjct: 533 QTKTVTSKVVAKDGSVVAIGGILEKTEDVKDSGVPGLMNIPILGYLFKEKYQQEKTNELL 592

Query: 412 IAATPFLV 419
           I  +P +V
Sbjct: 593 IFLSPKIV 600


>gi|294142972|ref|YP_003558950.1| general secretion pathway protein D [Shewanella violacea DSS12]
 gi|293329441|dbj|BAJ04172.1| general secretion pathway protein D [Shewanella violacea DSS12]
          Length = 712

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 109/305 (35%), Gaps = 47/305 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             +   V+N L+I    QV ++  I EV        G Q + 
Sbjct: 314 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 372

Query: 220 TGSSSGPSKSFAADFG--------------------------------------GKFVSE 241
                    +     G                                          + 
Sbjct: 373 ASGGGTQFNNLGPTIGEIGAGVWLAKDQKASQTCTGSGDNKTCTDNPDTPGDITLLAQAL 432

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +    T S S
Sbjct: 433 GKVNGMAWGVATGDFAALIQAVSSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGSQS 492

Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                    T+V   + GV L   P +     + L I+ EVS            ++  R+
Sbjct: 493 SSNGNENPFTTVERKEVGVKLKVIPQINEGSSVKLTIEQEVSGINGKTAVD--VTFATRR 550

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV   SG  +VL GL+ +++Q+  + +P L  +P++G LFR+S  ++++  + I   
Sbjct: 551 LTTTVMADSGQIVVLGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIK 610

Query: 416 PFLVK 420
           P +++
Sbjct: 611 PTIIR 615


>gi|258406114|ref|YP_003198856.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
 gi|257798341|gb|ACV69278.1| type II and III secretion system protein [Desulfohalobium retbaense
           DSM 5692]
          Length = 499

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 54/256 (21%), Positives = 102/256 (39%), Gaps = 21/256 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------S 224
           V+N L      Q+ ++ +I E  ++  +++G +      +                    
Sbjct: 242 VLNHLE-RPRKQIHIEASIVEATQNTARELGMRWRGRYVTSGRGIEDVGIIGDAQEPEDW 300

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G + +     G   +      +V G +      + L ALE+   +  LA P+LT +  QS
Sbjct: 301 GSAITTLPGSGTDTLGGLKLGTVVGEIAGNVLFSQLQALEKEGQVNILASPSLTTMDNQS 360

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           AS    G+ +    +   G   V   D  + L   P ++    + + I     E     N
Sbjct: 361 ASTQ-HGERVPYETTDEDGDRVVKFEDVAMGLKVHPRIIEGDLMAMDIVVTKDEVDFSQN 419

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P  R ++ +T + + +G TIV++GL K  +   + G+P L K+P L  LF+    +
Sbjct: 420 VQGNPLIRTKETETNLLVRNGETIVISGLSKQTVSGTEHGVPGLRKVPGLSWLFKGIDKS 479

Query: 405 REETEIFIAATPFLVK 420
            +  E  +  TP ++ 
Sbjct: 480 EDMEEFMVFITPTILD 495


>gi|110833294|ref|YP_692153.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
 gi|110646405|emb|CAL15881.1| general (type II) secretion pathway protein D [Alcanivorax
           borkumensis SK2]
          Length = 710

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 122/341 (35%), Gaps = 29/341 (8%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                   +  L   D   +   L+ F+  +++      D       +   + S +A E 
Sbjct: 278 ETNNSGAKVIRLSHGDAKSMAELLKNFVDGASVN-RAGGDGKTTSVALNNNEVSIQADES 336

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
               + ++         S  V++ L++    Q+ ++  I E+  +  K +GFQ+    + 
Sbjct: 337 LNALVVRAKPAMMKQIQS--VISKLDVR-RAQILIEAAIVEISGEQGKNLGFQYVGGSNE 393

Query: 224 SGPSKSFAADFGGKFVSE------------------GGDFSVKGVLDRFSFETVLHALER 265
            G         G    S                                 +  ++ AL  
Sbjct: 394 DGVGAVNFGGNGLSVNSVVQALASDDPSGLSLGDGITAGLGETDSDGDLKWGALIQALST 453

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHF 318
           ++ +  L+ P++  +  + AS   G    + T  S+          T++   D G+ L  
Sbjct: 454 SSDVNLLSTPSILTLDNEEASIIVGENVPFVTGQSTNTGSGVSNPFTTIQREDVGLTLKV 513

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP V     I L ++ E S                RK  +TV      TI L GL+KDDI
Sbjct: 514 TPHVAGLSTIRLELEQESSAVKDSAGDAVDIVTTTRKLQSTVLADDAETIALGGLIKDDI 573

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +     +P L  IP+LG LFR++  +R ++ + +   P ++
Sbjct: 574 RVTVRKVPFLGDIPVLGFLFRSTSKDRVKSNLMVFLKPTIL 614


>gi|206577210|ref|YP_002240367.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
 gi|206566268|gb|ACI08044.1| pullulanase secretion envelope protein PulD [Klebsiella pneumoniae
           342]
          Length = 648

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
           ANV+        +++ +    + I  +   L R+     N +V        +D V VL G
Sbjct: 217 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 276

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
           +  ++Q+ +++ +             +  +++             ++V+  L+I    QV
Sbjct: 277 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 335

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            ++  IAEV+      +G Q +   +      +                           
Sbjct: 336 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 395

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +L AL  +T    LA P++  +    A+F  G +    T S
Sbjct: 396 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 455

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       +V     G+ L   P +     + L I+ EVS      ++       ++ 
Sbjct: 456 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 515

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  + +
Sbjct: 516 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 575

Query: 413 AATPFLVK 420
              P +++
Sbjct: 576 FIRPTIIR 583


>gi|218710790|ref|YP_002418411.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
 gi|218323809|emb|CAV20166.1| type IV pilus assembly protein PilQ [Vibrio splendidus LGP32]
          Length = 572

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 65/312 (20%), Positives = 120/312 (38%), Gaps = 31/312 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++D +   G V  + +         T        +   +  + ++  L+I  + QV
Sbjct: 261 KATDIADMIGGEGAVSMLSERGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 319

Query: 197 TLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGPSKSF 230
            ++  I  V    L ++G +  +                           G +S      
Sbjct: 320 QIEARIVTVTEGNLDELGVRWGVSSTNGSFKVGGSIEGNHPSQITPYDDNGGNSAIDDFL 379

Query: 231 AADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             + G    S     F V  +      +  L AL++ +    ++ P L   + + A    
Sbjct: 380 NVNLGATSPSASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 439

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+
Sbjct: 440 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 498

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S  N  +
Sbjct: 499 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSQVDKVPLLGDLPVLGALFRRSYENVGK 558

Query: 408 TEIFIAATPFLV 419
           +E+ I  TP +V
Sbjct: 559 SELLIFVTPKVV 570


>gi|251789515|ref|YP_003004236.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           zeae Ech1591]
 gi|247538136|gb|ACT06757.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           zeae Ech1591]
          Length = 691

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 69/451 (15%), Positives = 140/451 (31%), Gaps = 40/451 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G  + I++  N     +   D + V++     A V   +     + + +     G A +
Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213

Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN--IRVEMVSDTVVL-------H 148
           +  L+  +               +   MT            +   ++   +L        
Sbjct: 214 LNELMDGNRNTPAGAAAAGSGIGSDGGMTTADGAGGGQDASKAIEMNARSMLAKLASRNS 273

Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204
           G   +    +  +  ++S    + +   +       +   L++     Q  V +   I +
Sbjct: 274 GGASSASRKKDQLNGKVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V R  L ++         +     +  +     FVS           D   F   + ALE
Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  +A P++  +  Q A                    +V     G  L  TP V+ 
Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440

Query: 325 -PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G   +++  ++ +  +  N     S   R    T   +     +VL G   ++     
Sbjct: 441 HGGSSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +PLL  IP +G LF + +      E     TP L+            D+    +DA  
Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560

Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
               R +K  ++G  E +  +  + +   GF
Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591


>gi|290473150|ref|YP_003466011.1| putative transporter [Xenorhabdus bovienii SS-2004]
 gi|289172444|emb|CBJ79211.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus bovienii SS-2004]
          Length = 361

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 87/229 (37%), Gaps = 6/229 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251
            QV +   I    R+ L ++G    +       S         +         V     +
Sbjct: 132 QQVQITAHIVTSSREALHELGIHWGMAADPLNRSIGLNRLNLHQSAGNQSHRLVLNTARI 191

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                E  L ALE+   +  +A P LTA   Q AS   G    Y         T++   +
Sbjct: 192 HASLLEMELSALEQENQLDIIASPRLTASHQQPASIKQGSDIPYLV--QDKDKTTIQFKE 249

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TP +L  G+I L ++   + P   I     +  +   ++  T V + +G T++
Sbjct: 250 AVLGMEVTPHILRKGKIRLALKISQNAPGLPISQGGNENLAIDKQEIVTQVTVRNGETLI 309

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L G+ +       + +P LS +P+LGALF          E+ I  TP L
Sbjct: 310 LGGIFQQKKGASLQKVPYLSDLPLLGALFNQKGEQHSRRELVIFITPQL 358


>gi|190574660|ref|YP_001972505.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190012582|emb|CAQ46210.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
          Length = 792

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/462 (17%), Positives = 161/462 (34%), Gaps = 39/462 (8%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            LQ+     ++  +     +    P  K    A    + V +         L + ++ ++
Sbjct: 197 KLQQGIAVDVAAMVAPLLDAQGAEPTQKVVVMADPRSNSVLLRSSSPGRTRLARQLVEKL 256

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTM--YLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
                +    +     +       +   L G   GQ++   +G   + +  L        
Sbjct: 257 DRAQDES--GNLHVVYLRNAQANQLAGVLRGVVAGQSDAPAMG-SNEGITPLPGDASHST 313

Query: 121 AHLEMTLRRFIADSNI----RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
                  ++     N     R++      +  G     Q+         T        + 
Sbjct: 314 PAQPSQPQQAKPGGNALESQRLDPSRRDPIDAGSTGFSQNGISVQADVATNTLLISAPEP 373

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
              + ++V++ L+     QV ++  I EV +    ++G Q  +    +     F    GG
Sbjct: 374 VYRNLRRVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGG 432

Query: 237 KFVSEG-------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             ++                     G  ++ GV    + + + +AL+       L+ P L
Sbjct: 433 SGLNTTARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSKGGANILSTPNL 492

Query: 278 TAISGQSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +  ++AS   G    + +          S+    ++   D G+ L   P +   G + 
Sbjct: 493 MTLDNEAASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVK 552

Query: 330 LRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           L I  EVS                 R  DT+V L  G  +VL GLL+D +   ++ +P L
Sbjct: 553 LDIYQEVSSIDAQSANSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGL 612

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
            KIP+LGALFR+    R +T + +   P +V+ P A + L+R
Sbjct: 613 GKIPVLGALFRSDTRKRAKTNLMVFLRPHVVREPAAGQRLTR 654


>gi|238783115|ref|ZP_04627141.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
 gi|238715911|gb|EEQ07897.1| Protein transporter HofQ [Yersinia bercovieri ATCC 43970]
          Length = 405

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 72/380 (18%), Positives = 133/380 (35%), Gaps = 31/380 (8%)

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V V     AD    +   + +     G  ++ L+    +Q L + + +       E  + 
Sbjct: 30  VSVVLQALADYQQLN---LVVAAGVSGNISLRLVDVPWEQALTIILRMGHLKVEREGAVM 86

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRT----IQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
               + +I                +          A +++++       +   +    K 
Sbjct: 87  MVFTEQDIEERQQRTKQKTEPDSLSNLTLALQHADAEQVADSLDESELLSPLGSVMVDKR 146

Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            N L I                      QV L   I  + R+ L+++G +  +  S    
Sbjct: 147 TNTLLIRDTPASLAVLKGWLAEMDLPLQQVQLAAHIVTMSRENLQELGVRWGMGESQHAT 206

Query: 227 S---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           S     F  +           F+V  +  R     +  ALE+   +  +A P L A   Q
Sbjct: 207 SLRVNDFNVNLPLANSVVNAGFNVARIGGRLLELEL-SALEQENQVDIIASPRLVASHLQ 265

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           +AS   G    Y       GA S+   +  + +  TP +L  G+I L ++   + P + +
Sbjct: 266 TASIKQGSDIPYAVARGDKGAVSIEFKEAVLGMEVTPKILRNGKITLNLKISQNMPGMTI 325

Query: 344 --NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                +      ++  T + +  G TIVL G+ +    Q    +P+L+ IP LGALF+  
Sbjct: 326 KRGDTEALLIDKQEIKTQITVNDGETIVLGGIFQQKNNQAVNKVPILADIPWLGALFKQD 385

Query: 402 RFNREETEIFIAATPFLVKP 421
              +   E+ I  TP L+  
Sbjct: 386 TKQQSRRELVIFITPRLISA 405


>gi|217971366|ref|YP_002356117.1| general secretion pathway protein D [Shewanella baltica OS223]
 gi|217496501|gb|ACK44694.1| general secretion pathway protein D [Shewanella baltica OS223]
          Length = 706

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 108/305 (35%), Gaps = 47/305 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             + + V+N L+I    QV ++  I EV        G Q + 
Sbjct: 315 IMAHAETNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAA 373

Query: 220 TGSSSGPSKSFAADFG---------------------------------------GKFVS 240
                    +     G                                           +
Sbjct: 374 KAGGGTQFNNLGPTIGEIGAGVWQAQGEKGSSITTLDPEGKPVVTTNPDKRGDVTLLAQA 433

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295
            G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +        
Sbjct: 434 LGKVNGMAWGVAMGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGST 493

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
            + S+S    +V   + GV L   P +     + L I+ EVS            S+  R+
Sbjct: 494 ASSSNSNPFQTVERKEVGVKLKVVPQINEGNAVKLTIEQEVSGVNGNTGVD--ISFATRR 551

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV   SG  +VL GL+ +++Q+  + +P L  IPI+G LF++S   + +  + I   
Sbjct: 552 LTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPIIGHLFKSSSSKKTKKNLMIFIK 611

Query: 416 PFLVK 420
           P +++
Sbjct: 612 PTIIR 616


>gi|121610459|ref|YP_998266.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121555099|gb|ABM59248.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 740

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 61/314 (19%), Positives = 113/314 (35%), Gaps = 37/314 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
               QV ++  I E+  + L Q G Q                G++SG S           
Sbjct: 405 GRRAQVLVESLIVEISANKLAQFGVQWQSLLGKKGASLLGAIGTNSGQSGGNITSLTAAL 464

Query: 239 VSEGGDFSVKG---------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            S                        +  ++    + + L+ +     L+ P L  +  +
Sbjct: 465 ASGSTTSIATAANSLGQGMNLLLAPRINGQYYLGALANFLQNSGDANVLSTPNLMTLDNE 524

Query: 284 SASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            A    G    + T S +           T+V   D G++L   P +   G + L +  E
Sbjct: 525 EAKIVIGNNVPFVTGSYANSSSNSTVNPFTTVQRQDVGLMLRVRPQINENGTVKLSVYQE 584

Query: 336 VSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS+       + + P+   R  ++ V +  G  IV+ GLL+D     ++ +P+L  +P+L
Sbjct: 585 VSKIDASTLTSPNGPTTSKRSIESNVLVEDGSIIVIGGLLEDSYSLNQDKVPVLGDMPVL 644

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
           G LFR+ +  R +T + I   P +++  A  D+    D Y      +       + +   
Sbjct: 645 GNLFRSEKRTRNKTNLMIFLRPTVLRSSASSDI-LTADRYDAIRALQLGIQPVAHPMLDA 703

Query: 455 KEASEVEGQNYKGA 468
            +A+ V      G 
Sbjct: 704 VDAAPVLPPPRPGT 717


>gi|153003562|ref|YP_001377887.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
 gi|152027135|gb|ABS24903.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. Fw109-5]
          Length = 893

 Score =  172 bits (435), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 106/307 (34%), Gaps = 37/307 (12%)

Query: 147 LHGMVRTIQ-DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           + G V+ +  +         T +      Q A   ++ ++  L+     QV ++  I E 
Sbjct: 579 VSGRVKDVLSERGSVSTDERTNVLIVKDVQEALVRAEGLVRNLDTEIP-QVLIESRIVEA 637

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA--------------------------------D 233
             +  K +G Q     S +  + +                                    
Sbjct: 638 SSNFNKALGVQWGGNASFTQATGNPTGVAFPNNVAAAGGAGPGNSFGTAANPNYAVSLPA 697

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G                 F+    L ALE    ++T++ P +  I  + A+   G   
Sbjct: 698 PVGDGQGGALGLVFGSAGGAFNLNLRLSALENNGVVKTISAPKIATIDNREATI--GQGI 755

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYR 352
                  S    + T  +  + L  TP V + G I L+I+   ++P   +      PS  
Sbjct: 756 SIPFSQVSASGVNTTFIEAKLELKVTPHVSADGSILLKIKATNNQPNPQLTGANGQPSIS 815

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+A+T V +  G T V+ G+           +P L K+P+LG  FRN     + TE+ I
Sbjct: 816 KREAETEVLVKDGETTVIGGIYTRQTANRTSEVPFLGKLPLLGYFFRNMSEQDDHTELLI 875

Query: 413 AATPFLV 419
             TP ++
Sbjct: 876 FITPRIL 882


>gi|107100151|ref|ZP_01364069.1| hypothetical protein PaerPA_01001172 [Pseudomonas aeruginosa PACS2]
          Length = 786

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/268 (22%), Positives = 105/268 (39%), Gaps = 26/268 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++LL+     QV ++  I EV  D   + G Q                       + G
Sbjct: 454 EVIDLLDQR-RAQVVIESLIVEVSEDDSSEFGIQWQAGNLGGNGVFGGVNFGQSALNTAG 512

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G   + G+      + +  AL+       L+ P L  +  +SA
Sbjct: 513 KNTIDVLPKGLNIGLVDGTVDIPGIGKILDLKVLARALKSRGGTNVLSTPNLLTLDNESA 572

Query: 286 SFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + +          S+    ++   D G+ L+  P +   G + L +  EVS
Sbjct: 573 SIMVGQTIPFVSGQYVTDGGGTSNNPFQTIQREDVGLKLNIRPQISEGGTVKLDVYQEVS 632

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D++Q   +G+P LS +P +G+L
Sbjct: 633 SVDERASTAAGVVTNKRAIDTSILLDDGQIMVLGGLLQDNVQDNTDGVPGLSSLPGVGSL 692

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMR 425
           FR  + +R +T + +   P++V+  A  
Sbjct: 693 FRYQKRSRTKTNLMVFLRPYIVRDAAAG 720


>gi|26987782|ref|NP_743207.1| general secretion pathway protein D [Pseudomonas putida KT2440]
 gi|24982477|gb|AAN66671.1|AE016295_4 type II secretion pathway protein XcpQ [Pseudomonas putida KT2440]
          Length = 584

 Score =  172 bits (435), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/344 (18%), Positives = 121/344 (35%), Gaps = 34/344 (9%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G     +  L   +   +   LR    +  + VE   +     G  R +  +     +  
Sbjct: 197 GSGSTQVIYLRHANAGEVVKVLRGLSQEGAVPVEGAGEA---EGKDRPVVPAAGGSGIRL 253

Query: 166 TFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
            +   +         S+      ++  L+I    QV ++  IAEV     +++G Q    
Sbjct: 254 EYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFA 312

Query: 221 GSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVL 260
               G         G                        + G    +      F+F  ++
Sbjct: 313 DEKFGAGIVNFGSNGVNIASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLV 372

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVL 316
           +AL+  +    L+ PTL  +    AS   G +  + T S +        ++   + GV L
Sbjct: 373 NALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKL 432

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
              P +     + L I  EVS      +A D+     R+  T V +   G ++L GL+ D
Sbjct: 433 RIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISD 491

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++    + +PLL  IP LG LFR+      +  + +   P +++
Sbjct: 492 ELSTSDQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535


>gi|330954627|gb|EGH54887.1| general secretion pathway protein D [Pseudomonas syringae Cit 7]
          Length = 356

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/305 (21%), Positives = 110/305 (36%), Gaps = 20/305 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV+  
Sbjct: 39  GNNKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVQLT 97

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 98  GELDMGVQWYLGRLAGNSGTTGNVTNTSGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 157

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G              S+ T  +SV     GV
Sbjct: 158 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTDTTLSSVEYVQTGV 217

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYRVRKADTTVELPSGGTIVLA 371
           +L   P +   G + + IQ +VS      N  D    P    R   T V   SG T++L 
Sbjct: 218 ILDVVPRINPGGLVYMDIQQQVSSADTNANNNDANGNPRISTRSVATQVAAQSGETVLLG 277

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GL+K D  +    +P L +IP L  LF N+  +++ TE+ +  TP ++   +     +  
Sbjct: 278 GLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKDRTELIVLITPRVI--TSSSQARQVT 335

Query: 432 DHYSV 436
           D Y  
Sbjct: 336 DDYRQ 340


>gi|330938340|gb|EGH41971.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 247

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 66/241 (27%), Positives = 111/241 (46%), Gaps = 10/241 (4%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               +                +F++           +++A+E +    TLA P+L A++G
Sbjct: 4   GINVTPGAVGGITPSIPLNNSNFNIVWGGGSSKVLGMINAMENSGYAYTLARPSLVALNG 63

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-- 340
           QSASF +GG+      +      S+   ++GV L  TPTV+   RI L++  EVSE    
Sbjct: 64  QSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKVAPEVSELDFS 123

Query: 341 --IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             I +    +P+  +R+ DT++ L  G + V++GL+        +  P L  IPILGA F
Sbjct: 124 AGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGLGDIPILGAFF 183

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFF--NRVNKIY 452
           R+S+  R+E E+ +  TP LV+P+A      S P +          + +F      ++  
Sbjct: 184 RSSQIQRDERELLMIVTPHLVQPLAANARLPSLPGEGLRTYDPSFPRLYFLENGDFDRRD 243

Query: 453 G 453
           G
Sbjct: 244 G 244


>gi|294139057|ref|YP_003555035.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
 gi|293325526|dbj|BAJ00257.1| MSHA biogenesis protein MshL [Shewanella violacea DSS12]
          Length = 560

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248
            QV ++  I EV      Q G          G        S   +     ++        
Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTNIEFGTSSGGNSLSDQITSVIGGVTS 339

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
                  F  +++ L+    +  L+ P +TA++ Q A    G    + T  S        
Sbjct: 340 LKFSGTDFAAMINLLDTQGDVDVLSSPRVTALNNQKAVIKVGTDEYFVTDVSSTTVAGNT 399

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
             +T    +T    G+ L  TP +   G + L I   V           +          
Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGEGNVLLHIHPSVISIKEQTKTIKISDSTLELPLA 459

Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP+LG LF N   + ++TE
Sbjct: 460 QSDIRESDTVIMARSGDVVVIGGLMKSENIELLSKVPLLGDIPLLGELFTNRSKSLKKTE 519

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 520 LVILLKPTVV 529


>gi|238897480|ref|YP_002923157.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
 gi|229465235|gb|ACQ67009.1| putative protein exporter, transport across outer membrane (General
           Secretory Pathway) [Candidatus Hamiltonella defensa 5AT
           (Acyrthosiphon pisum)]
          Length = 687

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 41/299 (13%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
                +T       +Q    S + ++  L+I    QV ++  I EV        G Q   
Sbjct: 330 IAASKKTNALVVTASQDVMQSIRSIIEQLDIR-RAQVHVEALIVEVAEISDINFGVQWQA 388

Query: 220 TGSSSGPSKSFAADFGGKFVS---------------------------------EGGDFS 246
             S    +       G   ++                                   G   
Sbjct: 389 NNSLIQFNNGHQIPLGALTLARRHAESKTGNTLNQNETFLPSQVSSDISLLSKLLSGFSG 448

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSS 301
            K  + +  ++ ++ A++  +++  L+ P++T +  Q ASF  G      T      +++
Sbjct: 449 AKVGIIKGDWQALVQAVKNDSSVNVLSTPSITTLDNQEASFMVGEDVPVLTGSAANANNT 508

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               +V     GV+L  TP +     + L I+ EVS+            +  RK  TTV 
Sbjct: 509 NPFNTVERRKIGVMLKVTPQINEGNTVQLLIEQEVSKIQGETKLD--IKFAERKLKTTVL 566

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              G  IVL GLL ++  +    +P+L  IPILG LF+++   + +  + I   P +++
Sbjct: 567 ADDGQLIVLGGLLDEESGESVSKVPVLGDIPILGHLFKSTVNKKTKRNLMIFIRPTILR 625


>gi|330989446|gb|EGH87549.1| general secretion pathway protein D [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 778

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGFNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711


>gi|308272047|emb|CBX28655.1| hypothetical protein N47_G39790 [uncultured Desulfobacterium sp.]
          Length = 667

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 12/240 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS--VKGV 250
             QV ++  IA++       +G   +I   + G S +          S          G 
Sbjct: 379 PRQVMIEGMIAQIDLKDDLSLGLAWAINTKNFGGSPANITFNANGLTSATSSTGLRFIGT 438

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGAT 305
               +   V+ ALE  +  + LA P +     + A+   G Q    T      S+     
Sbjct: 439 DSGDAVRAVVTALESQSRGKLLAAPHILVSDNREATIQVGQQVPIVTSSTLATSTQAAQQ 498

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTV 360
           ++   D G++L   P V   G + L I+ EVS          V + +       +  T +
Sbjct: 499 TIQYKDIGIILKVKPQVNDSGLVSLEIKQEVSSFSSLSSADTVTSNEDILINKTEVSTNL 558

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G TI++ GL+++D  + + GIP L KIPILG LF  +    + TE+ I  TP +VK
Sbjct: 559 VVQDGHTIIIGGLIREDKSKSRTGIPWLVKIPILGFLFGGTNDTNKRTELIILLTPHVVK 618


>gi|288937072|ref|YP_003441131.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|290512493|ref|ZP_06551859.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
 gi|288891781|gb|ADC60099.1| general secretion pathway protein D [Klebsiella variicola At-22]
 gi|289774834|gb|EFD82836.1| general secretion pathway protein D [Klebsiella sp. 1_1_55]
          Length = 651

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/368 (18%), Positives = 137/368 (37%), Gaps = 45/368 (12%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTL-RRFIADSNIRVEM-----VSDTV-VLHG 149
           ANV+        +++ +    + I  +   L R+     N +V        +D V VL G
Sbjct: 220 ANVVADERTNAVLVSGEPNSRQRIIAMIKQLDRQQAVQGNTKVIYLKYAKAADLVEVLTG 279

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSS-------------KKVMNLLNIAGEDQV 196
           +  ++Q+ +++ +             +  +++             ++V+  L+I    QV
Sbjct: 280 ISSSLQNDKQSAKPVAAIDKNIIIKAHGQTNALIVTAAPDVMNDLERVIAQLDIRRP-QV 338

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            ++  IAEV+      +G Q +   +      +                           
Sbjct: 339 LVEAIIAEVQDADGLNLGIQWANKNAGMTQFTNSGLPISTVIAGANQYNKDGTVSSSLAS 398

Query: 243 ---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                  +     + ++  +L AL  +T    LA P++  +    A+F  G +    T S
Sbjct: 399 ALGSFNGIAAGFYQGNWAMLLTALSSSTKNDILATPSIVTLDNMQATFNVGQEVPVLTGS 458

Query: 300 SSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYR 352
            +T       +V     G+ L   P +     + L I+ EVS      ++       ++ 
Sbjct: 459 QTTSGDNIFNTVERKTVGIKLKVKPQINEGDAVLLEIEQEVSSVADSASSTSSDLGATFN 518

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  +  V + SG T+V+ GLL   +    + +PLL  IP++GALFR+      +  + +
Sbjct: 519 TRTVNNAVLVGSGETVVVGGLLDKSVTDTADKVPLLGDIPVIGALFRSESKKVSKRNLML 578

Query: 413 AATPFLVK 420
              P +++
Sbjct: 579 FIRPTIIR 586


>gi|238022253|ref|ZP_04602679.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
 gi|237866867|gb|EEP67909.1| hypothetical protein GCWU000324_02160 [Kingella oralis ATCC 51147]
          Length = 699

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/257 (19%), Positives = 96/257 (37%), Gaps = 24/257 (9%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------TGSSSG----------- 225
           ++  L++    QV ++  I E    + +++G +            ++ G           
Sbjct: 435 LIEELDVPAR-QVMVEARIVEASDTLSRELGVKFGGVRAGSTSWANNWGLATERNSRGVR 493

Query: 226 ---PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                  F  +      S  G  +V       +    L A E     +T++ P +     
Sbjct: 494 NGSSGVLFEPNINVPVASAVGSIAVVKSFSSVTLGLELSASEAEGRSKTISTPRVLTQDR 553

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q A    G Q  Y     S G+T+ +  D  + L   P +    +I + +      P   
Sbjct: 554 QEAEIKQGYQVPYT-TRDSDGSTTTSFKDAVMSLKVLPRITPDNKIIMDVTINKDTPDNT 612

Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             ++   PS R +   T   +  GGT+V+ G+ ++ IQ   + +P+L  +P+LG LF+  
Sbjct: 613 YQSSEGEPSIRTQSVKTQAMIEDGGTLVVGGVYQEVIQNNVKKVPMLGDLPVLGNLFKTR 672

Query: 402 RFNREETEIFIAATPFL 418
             N    E+    TP +
Sbjct: 673 SRNNSRNELLFFITPRI 689


>gi|222109918|ref|YP_002552182.1| type IV pilus secretin pilq [Acidovorax ebreus TPSY]
 gi|221729362|gb|ACM32182.1| type IV pilus secretin PilQ [Acidovorax ebreus TPSY]
          Length = 696

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 92/246 (37%), Gaps = 23/246 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233
            QV ++  I E R    + +G +                        GS   P  S  A 
Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G         S+            L A+E     + ++ P L       A    G ++
Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y   +   GAT++      + L  TP +   G I L +  +V++   G +     +   
Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGESTTQGVAIDT 623

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G LF+N      + E+ + 
Sbjct: 624 KHIKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683

Query: 414 ATPFLV 419
            TP ++
Sbjct: 684 ITPKVI 689


>gi|92112745|ref|YP_572673.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
 gi|91795835|gb|ABE57974.1| type II and III secretion system protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 668

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/361 (18%), Positives = 134/361 (37%), Gaps = 47/361 (13%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           +IL  H      N D+++   +  L    R+ + +   R +      ++   V       
Sbjct: 308 LILQSHGLASRRNGDVIVVAPVDELAQMERQTLEN---RAQSEQLAPLVTDYV--QVRYA 362

Query: 159 RAVELSETFLSQSGRN---QYANSSSKKVMNLLNIAGED------------------QVT 197
           +A +L+       G     +    +  +  N L +                      QV 
Sbjct: 363 KATDLAAMLRGSEGFGLLSERGRVTVDERTNTLLVRDTREQLASIRGMLERLDVPVRQVQ 422

Query: 198 LKVTIAEVRRDILKQIGFQHSITG-------------------SSSGPSKSFAADFGGKF 238
           ++  I   R    +++G    I+                    S +    +  +   G  
Sbjct: 423 IEARIVIARDTASRELGVNWGISQRQGVTFDDDGVGSVVDRNPSGANRGSAGLSVDLGDS 482

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G  FS   +      +  L ALE     +T+++P +   + ++A    G +  Y+  
Sbjct: 483 DGSGSTFSFGYLSGDVLLDLELRALESEGKSQTISQPKVITANQKTAVIKQGQEIPYQES 542

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +SS GAT+V   +  + L  TP +   G I + +    ++ V   +    P+      +T
Sbjct: 543 TSS-GATNVEFKEAVLSLEATPQITPDGSIVMDLLIN-NDTVADNSYDGAPAIDTNSIET 600

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G T+VL G+L  +  +     P L  +P++G+LFR ++ + E+ E+ I  TP +
Sbjct: 601 QVLVDDGATVVLGGILTSEQLRNLYKTPFLGDLPLIGSLFRYTQESNEKVELLIFITPTI 660

Query: 419 V 419
           +
Sbjct: 661 I 661


>gi|298527731|ref|ZP_07015135.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511383|gb|EFI35285.1| general secretion pathway protein D [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 703

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/237 (26%), Positives = 100/237 (42%), Gaps = 11/237 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++V IAEVR     ++G        S G   S    F     +  G   V  V  
Sbjct: 443 PKQVLIEVIIAEVRLSDATKMGVDWQYI-LSFGDRLSGELRFDPAADALPGAGGVFRVES 501

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTG 303
               +  L+A      ++ L+ PTL A   + A+   G Q  + T +         S   
Sbjct: 502 SRRLKAALYAAVDDAKLQILSTPTLLASDNRPATINIGDQVPFPTSTRQRLDDTDTSEVI 561

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
            T++   D G++L  TP +   G + + I  EVS      V     P    R A+TT+ +
Sbjct: 562 DTTIQYRDTGIILRVTPKINRHGMVRMEIVQEVSSLTARRVEGITAPVINTRHAETTLAV 621

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               TIV+AGL++ +  +   G+P   +IP++  LF  S    E TE+ +  TP ++
Sbjct: 622 DDQETIVIAGLMEQERSRGYSGVPGFRRIPVVKHLFGTSETRFENTELLVFITPHVI 678


>gi|218894139|ref|YP_002443008.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218774367|emb|CAW30184.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 714

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
           ++++ L+I    QV ++  I E      K +G +                          
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496

Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                     T  ++G SKS +               +  + D    +  L A+E+    
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  +   +  + +P L 
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
            +P LG LFR    +  + E+ +  TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704


>gi|30248714|ref|NP_840784.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30180309|emb|CAD84616.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 697

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 68/379 (17%), Positives = 143/379 (37%), Gaps = 23/379 (6%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + +  NK  +  +   ++ +        DV     + ++++    G A  ++        
Sbjct: 299 LGVAQNKSDLELLREWIERL--------DVSKLGAQRIFVYNVQNGNAKDLVAPLRQVLT 350

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +             +              +S    + G    +       E +     
Sbjct: 351 GEMQATTASGTTVSPTSTPMSTPQMPAAAPSLSAEPSISGSQTNVGRLVAIEENNSLMFY 410

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
            +         + K +++L      QV ++  +AEV  +   + G Q          + +
Sbjct: 411 GTEDEFRVIQEALKQIDVL----PRQVMIEAFLAEVTLNNNLRYGVQWFFDSGE--NTVT 464

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            +A   G   S+   FS      + +   VL+AL+  T ++ L+ P ++ ++ Q AS   
Sbjct: 465 LSATDVGSVASQFPGFSYIYA-GKANARIVLNALQSKTEVKILSAPKISVLNNQKASLQV 523

Query: 290 GGQHLYKTVSSSTG-------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           G Q    T +S            ++   D GV+L   P V   G + L +  EVSE    
Sbjct: 524 GDQVPIVTQTSQGTVVSGAPVINTIQMRDTGVILEVIPRVNDNGNVILDVTQEVSEVAQT 583

Query: 343 VN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +   D P+ + RK  + +    G T+ L GL++++      G+PL+  +P++G LF+++
Sbjct: 584 TSSGIDSPTIQRRKIHSVIATRDGFTVALGGLIRENGSAGNSGVPLIKDVPVIGNLFKSN 643

Query: 402 RFNREETEIFIAATPFLVK 420
             +   TE+ +   P +++
Sbjct: 644 TSDIRRTELVVLLVPHVMR 662


>gi|254244078|ref|ZP_04937400.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
 gi|126197456|gb|EAZ61519.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa 2192]
          Length = 714

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
           ++++ L+I    QV ++  I E      K +G +                          
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWRGYGKDGNIGIKDEDG 496

Query: 220 ----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                     T  ++G SKS +               +  + D    +  L A+E+    
Sbjct: 497 MNCGPIAGNCTFPTTGTSKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  +   +  + +P L 
Sbjct: 616 VEVKVTKDAPDFDRALNGVPPINKNEVNAKILVNDGETIVIGGVFSNTQSKSVDKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
            +P LG LFR    +  + E+ +  TP +
Sbjct: 676 DLPYLGRLFRRDTVSDVKNELLVFLTPRI 704


>gi|237809367|ref|YP_002893807.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
 gi|237501628|gb|ACQ94221.1| type IV pilus secretin PilQ [Tolumonas auensis DSM 9187]
          Length = 702

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 55/274 (20%), Positives = 103/274 (37%), Gaps = 29/274 (10%)

Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
            +        + +++ +      QV ++  +  V   +   +G +  +T  ++  S S +
Sbjct: 426 VKDTAEVIDHIKDMIKVLDVAVKQVVIEARMVTVTDGVEDALGIRWGVTDINTNGSTSGS 485

Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                                  A       +    F V  + D    +  L ALE    
Sbjct: 486 IEGLDTAATGETPAIDDRLNVNLAAAPSSGTAASIAFQVAKLADGSLLDLELSALENENK 545

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              ++ P +T  + + A    G +  Y   +SS GAT+++     + L  TP +     +
Sbjct: 546 AEIISSPRVTTANQKEALIEQGYEIPYNESASS-GATTISFKKAVLSLKVTPQITPDNNV 604

Query: 329 GLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            L +     +    V   N G   +   +   T V + +G T+VL G+    I++    I
Sbjct: 605 ILDLHVTQDDIYQDVNTGNGGTAKALSTQAITTQVLVKNGETLVLGGIYNRSIKKTVNKI 664

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  IP +G LFRN+     + E+ I  TP +V
Sbjct: 665 PVLGDIPGVGVLFRNTVNTNTKKELLIFVTPKIV 698


>gi|238788960|ref|ZP_04632750.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
 gi|238722987|gb|EEQ14637.1| Protein transporter HofQ [Yersinia frederiksenii ATCC 33641]
          Length = 376

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/233 (23%), Positives = 94/233 (40%), Gaps = 6/233 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L ++G +  +       S     F  +      +    F+V  +
Sbjct: 145 QQVQLAAHIVTISRENLHELGVRWGMGEGKPNTSLKMSDFNVNLPLPNSAINAGFNVARI 204

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +  ALE+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSGGKKGATTIEFK 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 323

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           VL G+ +    Q    +P+L  IP LG LF+     +   E+ I  TP L+  
Sbjct: 324 VLGGIFQQKSSQGVNKVPILGDIPWLGGLFKQDTQQQNRRELVIFITPRLISA 376


>gi|148546330|ref|YP_001266432.1| general secretion pathway protein D [Pseudomonas putida F1]
 gi|148510388|gb|ABQ77248.1| general secretion pathway protein D [Pseudomonas putida F1]
          Length = 584

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 64/346 (18%), Positives = 120/346 (34%), Gaps = 34/346 (9%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             G     +  L   +   +   LR    +  +  E   +     G  R +  +     +
Sbjct: 195 APGNGSTQVIYLRHANAGEVVKVLRGLSQEGAVPAEGAGEA---EGKDRPVMPASGGPGI 251

Query: 164 SETFLSQSGRNQYANSSSK-----KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
              +   +         S+      ++  L+I    QV ++  IAEV     +++G Q  
Sbjct: 252 RLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWL 310

Query: 219 ITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFET 258
                 G         G                        + G    +      F+F  
Sbjct: 311 FADEKFGAGIVNFGSNGVNIASIAGAAASGDSEALGDLLSTTTGATAGIGHFGGGFNFAM 370

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGV 314
           +++AL+  +    L+ PTL  +    AS   G +  + T S +        ++   + GV
Sbjct: 371 LINALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGV 430

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L   P +     + L I  EVS      +A D+     R+  T V +   G ++L GL+
Sbjct: 431 KLRIKPQINIDNSVRLDIVQEVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLI 489

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            D++    + +PLL  IP LG LFR+      +  + +   P +++
Sbjct: 490 SDELSTSNQRVPLLGDIPYLGRLFRSDATRNTKQNLMVFIRPRILR 535


>gi|107101302|ref|ZP_01365220.1| hypothetical protein PaerPA_01002336 [Pseudomonas aeruginosa PACS2]
          Length = 776

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+ +    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPARPLFEDAGAI 634


>gi|71735614|ref|YP_274395.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71556167|gb|AAZ35378.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 778

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711


>gi|320324664|gb|EFW80738.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 778

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711


>gi|320328774|gb|EFW84773.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 778

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTGGSTSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTSKTNLMVFLRPYIIR 711


>gi|254447504|ref|ZP_05060970.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
 gi|198262847|gb|EDY87126.1| type 4 fimbrial biogenesis protein PilQ [gamma proteobacterium
           HTCC5015]
          Length = 721

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 105/296 (35%), Gaps = 32/296 (10%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            +   A   + T               + ++  L+I  + QV ++  I     D  KQ+G
Sbjct: 422 SERGTATVDARTNTLMVTDTAVVMEQIRSMLQRLDIPVK-QVLIESRIVIASDDFDKQLG 480

Query: 215 FQHSIT---------GSSSGPSKSFA------------------ADFGGKFVSEGGDFSV 247
            +  +          G+  G S +F                    +F     S  G F+ 
Sbjct: 481 SRFGVNRIDPLPVGEGAVFGGSDTFNLQGRQSGGDLNINSRPMNFNFPANAGSSTGQFAF 540

Query: 248 KGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                  +  E  L AL+       ++ P +   + + A    G +  Y   +SS   T 
Sbjct: 541 ALPTSSGNLLELELSALQAEGKGEIISTPRVITANQKEAFIEQGVEIPYLEAASSGAVT- 599

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADTTVELPS 364
           V      + L  TP +    RI L +  +        G     +PS   R+ +T V + +
Sbjct: 600 VAFKKAVLSLTATPQITPDDRIILDLNVKKDNVGEIFGEGEIQVPSIDTREVETQVLVKN 659

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ + +       IP L  IP +G LFR       + EI I  TP +V+
Sbjct: 660 GETVVLGGIFEHETLDSVTKIPFLGDIPGIGRLFRREIKQNSKREILIFVTPKIVR 715


>gi|197104120|ref|YP_002129497.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
 gi|196477540|gb|ACG77068.1| type II secretory pathway protein D [Phenylobacterium zucineum
           HLK1]
          Length = 686

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 81/470 (17%), Positives = 158/470 (33%), Gaps = 70/470 (14%)

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGK--NVGQANVILIGHDGKQMLNLDILI--- 116
           +     D    +   + +VV S  ++ L G+   V     ++   D +     D+ +   
Sbjct: 218 LKAPGADPAARNGVVSIIVVDSSNSIILRGEPDAVRPLLALVADLDRRAESAGDVRVVQL 277

Query: 117 -ERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
              +   L   L++ +       +        +         T   + +A      +   
Sbjct: 278 QHANAEQLVPVLQQLVGQTPSPSAGPAATRRGEAPASPEPAATPTAAGQARANIARYPGA 337

Query: 171 SGRNQYANSSSKK----VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +     A+  +++    V+  L++    QV ++  + EV  +  K++G Q ++ G +   
Sbjct: 338 NAIVIAADPETQRMLAEVIRQLDVR-RRQVLVEAIVVEVSDEAAKRLGVQFALAGINGSA 396

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------------- 255
               A  +     +                                              
Sbjct: 397 IPFTATSYSNSAPNLPAVIGAVAAEKNLPDDDATKALLRDAAVRSLLAANGALIGGGGQI 456

Query: 256 -----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGAT 305
                F  V++A++  TA   L+ P++  +  Q A+   G +    T  S          
Sbjct: 457 GDDALFGLVINAVKSDTASNLLSTPSVMTLDNQPATILVGQEVPITTGESLGANNENPFR 516

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPS 364
           ++   + GV L  TP + + G I L ++ EVS     ++A         R+ +TTV +  
Sbjct: 517 TIARQNVGVQLEVTPQINAGGTITLFLRQEVSAVAGPISANFTELVLNKREIETTVNVDD 576

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
           G  IVL GLL  D +   E  P+L  IP LGALFR +   + +T + +   P +V     
Sbjct: 577 GEIIVLGGLLSQDERASVEKTPVLGDIPGLGALFRGTNKAKTKTNLMVFIRPKIVGDAAG 636

Query: 424 MRDLSRP----------DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            R ++ P                + + +A     + +   P  A    G 
Sbjct: 637 ARAVTGPKYEYIRGQQTAADPRRQSELEALVREYL-RAEPPTSAPLPAGP 685


>gi|158521058|ref|YP_001528928.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
 gi|158509884|gb|ABW66851.1| general secretion pathway protein D [Desulfococcus oleovorans Hxd3]
          Length = 799

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/350 (19%), Positives = 130/350 (37%), Gaps = 34/350 (9%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
             GK+ +++  L   D   L   L + + +           +        +  +      
Sbjct: 322 QQGKERIHVYYLKNADAEELAKVL-QMLPEKQGDATAEGKKL-----APVLSKAINITAD 375

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH------ 217
           + T        +      K+++  L+I     V ++  IAEV  +   ++G +       
Sbjct: 376 ASTNSLIIMAERDDYLVLKEIIEKLDIP-RSMVYIECLIAEVNINKDFELGAEWLVGGKG 434

Query: 218 ----------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                           S TG ++    +      G  V    +  V G ++  +   V+ 
Sbjct: 435 SYDDKDGGYAVGFGGGSDTGYANVARMAMGGLPSGFSVGAMAESIVVGGIEYPNLAAVVR 494

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDYGVVLH 317
           A ++   ++ L+ P +     Q A+ T G    Y T   +T      ++    D G+ L 
Sbjct: 495 AFKKDKDVQILSTPQIMTTDNQEATITVGKNIPYLTKIGTTSSEETYSNYEYKDVGISLK 554

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             P +     I L I+ E+++       + D P+   R   T V +    TIV+ GL+ D
Sbjct: 555 IKPQINENRLIRLDIEQELTKLDQLTTVSLDRPATLKRGITTNVIVHDEHTIVIGGLIDD 614

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            + +++  +P L  IP LG LF+    + E+T + +  TP ++K     D
Sbjct: 615 SMSRVEYKVPCLGDIPFLGWLFKGLSRSSEKTNLLVFLTPHVIKTAREAD 664


>gi|226946542|ref|YP_002801615.1| secretion system protein [Azotobacter vinelandii DJ]
 gi|226721469|gb|ACO80640.1| Bacterial secretion system protein [Azotobacter vinelandii DJ]
          Length = 717

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 52/361 (14%), Positives = 125/361 (34%), Gaps = 36/361 (9%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + +G   ++    +       ++  ++ IA L    R  +  +  +   ++  +      
Sbjct: 351 RKIGNVLLVAPADEIAARERQELEAQQQIAELAPLRRELLQVNYAKATDIA-KLFQSVTS 409

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               + QR     +   +     Q  +   +  +++  L++    QV ++  I E   D 
Sbjct: 410 SDEVEEQRGSITVDERTNNIIAYQTQDRLDELRRIVAQLDVPVR-QVMIEARIVEANVDY 468

Query: 210 LKQIGFQHSI-------------------TGSSSGPSKSFAADFGG------------KF 238
            K +G +                       G    P      +F                
Sbjct: 469 DKSLGVRWGGSFVNDQWSLYGKDGAQSVDDGQVFLPGTGQVGNFTLEDGMAPVPFVDMGV 528

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +      +  + D    +  L A+E+      +++P +     ++A   +G +  Y+  
Sbjct: 529 ANSTSGLGIGFISDHLILDLQLSAMEKTGNGEVISQPKVLTSDKETAKILTGEEIPYQEA 588

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           SSS   ++ +  +  + L  TP +    RI + ++    +         +P     + + 
Sbjct: 589 SSSGATST-SFKEAALSLEVTPQITPDNRIIMEVKVTKDQADFAKALNGVPPINKNEVNA 647

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G TIV+ G+  +   +  + +P L  +P +G LFR       ++E+ +  TP +
Sbjct: 648 KVLIGDGETIVIGGVFSNIQAKSVDKVPFLGDLPFIGRLFRRDVVADSKSELLVFLTPRI 707

Query: 419 V 419
           +
Sbjct: 708 L 708


>gi|330502644|ref|YP_004379513.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
 gi|328916930|gb|AEB57761.1| general secretion pathway protein D [Pseudomonas mendocina NK-01]
          Length = 647

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/451 (18%), Positives = 149/451 (33%), Gaps = 49/451 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  +NA +I+     I + + +   L++       V    V +      
Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIEDLMRQLDQSGAQDFSV----VTLQHAWVM 209

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127
           D   V +        K      V+      + +L         +A L  +L         
Sbjct: 210 DAAEVLNASIARGQAKGTSATQVVADARTNRLILLGPPQARSKLADLARSLDSPSSRSAN 269

Query: 128 ----RRFIADSNIRVEMVS----DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
               R    D+    E +           G   T + S   +   E+  +     +    
Sbjct: 270 TRVIRLRHNDAKSLAETLGEISEGLKTQEGSEATGRQSNILIRADESLNALVLLAEPDLV 329

Query: 180 SS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L++    QV ++  I EV  DI   +G Q ++               G   
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDALGVQWAVDARGRTGGLGGVNFGGTGL 388

Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +          +    F  ++ AL   +    L+ P+L  +  Q
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGVGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448

Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S +          T++   D GV L  TP +     + L I+ E+
Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPHINEGATLRLEIEQEI 508

Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S                   R   +T+    G  IVL GL++DD+ Q    +PLL  IP+
Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQATSKVPLLGDIPL 568

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           LG LFR++R +  +  + +   P +V+  A 
Sbjct: 569 LGGLFRSTRDSHIKRNLMVFLRPTVVRDGAG 599


>gi|260767306|ref|ZP_05876246.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|260617713|gb|EEX42892.1| MSHA biogenesis protein MshL [Vibrio furnissii CIP 102972]
 gi|315181306|gb|ADT88220.1| MSHA biogenesis protein MshL [Vibrio furnissii NCTC 11218]
          Length = 547

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 65/308 (21%), Positives = 114/308 (37%), Gaps = 31/308 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  L+        R        ++ +N+     + QV
Sbjct: 222 QLEKAVSRLIGSGRGQSVVVTPQAGVLTLRAYPDEVREV------RQFLNVSQQRMQRQV 275

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGDFSVKGV 250
            L+  I EV      Q G   S     +G         S +   G   +           
Sbjct: 276 ILEAKILEVTLTDGYQQGINWSNMSFGNGKVVIDRIGSSASTLPGLDAIGTLLSGQTNIT 335

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--------- 301
           +   SF +VL  +     +  L+ P +TA + Q A    G    Y T  SS         
Sbjct: 336 VSDGSFSSVLSFMATQGDLNVLSSPRVTAANNQKAVIKVGSDEYYVTDLSSVVGSGDNTQ 395

Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SY 351
                 +T    G+ L  TP +   G + L +   V E            +   +P    
Sbjct: 396 AAPDVELTPFFSGISLDVTPQIDDKGNVLLHVHPSVIEVTQQDKEITYNDSTFTLPLARS 455

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R++D+ +   +G  +V+ GL+K +       +P L  IP LG LFR++    E+TE+ 
Sbjct: 456 SIRESDSVIRAQNGDVVVIGGLMKTNTSNKVSKVPFLGDIPALGHLFRSTTELTEKTELV 515

Query: 412 IAATPFLV 419
           I   P +V
Sbjct: 516 ILLKPTVV 523


>gi|89075297|ref|ZP_01161724.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
 gi|89048978|gb|EAR54546.1| MSHA biogenesis protein MshL [Photobacterium sp. SKA34]
          Length = 541

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 26/299 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ GM+ +       V      +S            +  + +     + QV L+  I EV
Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSVKGVLDRFSFETVL 260
             D   Q G   S    S     +  A       GG  +SE         L   +F+ V+
Sbjct: 279 TLDDSYQQGINWSYLTKSGNGITTGTASIVEALPGGNAISELLGGQTNITLSDGNFKAVM 338

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTH 310
             L     +  L+ P +TA + Q A    GG   + T  SS+             S+T  
Sbjct: 339 SFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSPDVSLTPF 398

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRVRKADTTV 360
             G+ L  TP +   G + L +   V +        ++ +            +R++D+ +
Sbjct: 399 FSGISLDVTPQIDDQGGVLLHVHPAVIDVQNEQKTIEVGTEKPMVLPLAKSTIRESDSII 458

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +G  +V+ GL+K  I      +PLL  IP +G LFR+    +++TE+ I   P +V
Sbjct: 459 HARTGDVVVIGGLMKSSINDQVSKVPLLGDIPWVGNLFRHINKVKKKTELVILLKPTVV 517


>gi|15600233|ref|NP_253727.1| Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
 gi|12230952|sp|P34750|PILQ_PSEAE RecName: Full=Fimbrial assembly protein pilQ; Flags: Precursor
 gi|9951330|gb|AAG08425.1|AE004917_4 Type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 714

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 96/269 (35%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
           ++++ L+I    QV ++  I E      K +G +          S               
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496

Query: 229 ----------SFAADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAI 269
                     +F      K  S               +  + D    +  L A+E+    
Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  ++  +  E +P L 
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
           ++P LG LFR       + E+ +  TP +
Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704


>gi|186477543|ref|YP_001859013.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
 gi|184194002|gb|ACC71967.1| type IV pilus secretin PilQ [Burkholderia phymatum STM815]
          Length = 523

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 70/432 (16%), Positives = 144/432 (33%), Gaps = 47/432 (10%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
             P +    A +   +   +   + I++   +  +  V              A       
Sbjct: 101 GPPVLLAPAARLSESASASVPADRPITLHFQRGELGAVLGAFAK-FTGLNIVASDKARGA 159

Query: 85  RTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            T++L       A   L+  +G  M    +++     + L    R+         E  + 
Sbjct: 160 VTLHLNSVPWRTAFDTLLDVNGLAMEQRGNVIWVAPQSELAARERQRF-------ETHAR 212

Query: 144 TVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------- 190
              L  +     +     ++   +L     +Q   ++   + +    NLL +        
Sbjct: 213 AAELEPLASRTFELHYAHAEELRKLLTASGNQRVLSKRGAAMADPRTNLLFVTDLAARLA 272

Query: 191 ----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------SGPSK 228
                         QV ++  I E  +   + +G + S+ G++             G   
Sbjct: 273 QIAELVASLDRPTRQVLIEARIVEAEKGFSRNLGVKLSMIGTNEDGKATGLVGGKDGAIL 332

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +A     F +     ++            L ALE     + ++ P +       A   
Sbjct: 333 DLSARPVSGFDAATMGLTLFAAQATRLVNIELSALEAEGRGQIVSSPRVVTADRMKAVVE 392

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G      
Sbjct: 393 QGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVAKDSVGEQTASG 449

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   +   T VE+  GGT+ + G+ + D +     +PLL KIP+LG  FR+       +
Sbjct: 450 PAINTKHVQTRVEVEDGGTVSIGGIYETDGRDDVTRVPLLGKIPVLGVFFRHRAHRDLRS 509

Query: 409 EIFIAATPFLVK 420
           E+ +  TP +V+
Sbjct: 510 ELVVFITPRVVQ 521


>gi|167626079|ref|YP_001676373.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
 gi|167356101|gb|ABZ78714.1| general secretion pathway protein D [Shewanella halifaxensis
           HAW-EB4]
          Length = 720

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                           + G    +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +          +  +S    +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V     + L I+ EVS            ++  R+  TTV   SG  +VL GL+K+++Q+ 
Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +P L  IPI+G LF++S   +++T + +   P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611


>gi|256823530|ref|YP_003147493.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
 gi|256797069|gb|ACV27725.1| general secretion pathway protein D [Kangiella koreensis DSM 16069]
          Length = 708

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 69/296 (23%), Positives = 112/296 (37%), Gaps = 60/296 (20%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             V+  L+I    QV ++  I E+  +  K++G Q   +   S  +     +F       
Sbjct: 350 DSVIRALDIR-RKQVHVEAIIVEISDNKAKELGIQWLFSPEGSNTTPGGVVNFTNTGPGI 408

Query: 242 GGDFSVKGVL-------------------------------------------------- 251
           G   +                                                       
Sbjct: 409 GQVAAGAISARGTEEEVFTRDPETGEITGTETRRVGGDNGAALAEVLGGMQGLGLGVAKI 468

Query: 252 --DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGA 304
             D FS+   + ALE  T   TL+ P++T +    A F SG +    T      ++S   
Sbjct: 469 RPDGFSWGAFIRALEGVTDSNTLSRPSVTTLDNVEAIFKSGQEIPIITGSTLGDNNSNPF 528

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            +V   D GV+L  TP +     + L I+ EVS      N   +     R+  T+V +P 
Sbjct: 529 QNVERKDVGVMLKLTPQINEGNYVRLDIEQEVSSIAGSTNVDVV--TNKREVKTSVLVPD 586

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GG +VL GL+ DDIQQ  + +P+L  IP+LG  F++ R  + +  + I   P ++K
Sbjct: 587 GGMVVLGGLIDDDIQQSSQKVPILGDIPVLGHAFKSQRTQKIKRNLMIFIHPTVLK 642


>gi|319786312|ref|YP_004145787.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
 gi|317464824|gb|ADV26556.1| type IV pilus secretin PilQ [Pseudoxanthomonas suwonensis 11-1]
          Length = 619

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 27/257 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240
              DQV ++  I        + +G +  I G  SG + +       +  S          
Sbjct: 358 RPVDQVLIESRIVIASDSFARDLGARFGIQGRRSGNNTAAIGGSLNQTGSIVNGGVGVPG 417

Query: 241 -----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                        G  +   +   F+ +  L AL++      L+ P +   + + A    
Sbjct: 418 GLNVNLPATAENAGALAYTLLGANFALDLELSALQQEGRGEVLSNPRVVTSNQREAVIRQ 477

Query: 290 GGQHLYKTVSSSTGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GV 343
           G +  Y T++          +V   +  + L  TPT+ S  R+ + +     E +     
Sbjct: 478 GREVGYVTLTGGGNQAFATPNVQFKEVVLELKVTPTITSDDRVFMAVNVLKDEVLQYIDT 537

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           + G +P    R+ +T V +  G T+V+ G+ +         +P L  +P LG LF+    
Sbjct: 538 SIGQVPEIATREINTAVLVDDGQTVVIGGVYEFTDSNSVSKVPFLGDVPFLGNLFKKKSR 597

Query: 404 NREETEIFIAATPFLVK 420
            +E+ E+ I  TP +++
Sbjct: 598 LKEKAELLIFLTPKVMR 614


>gi|157377398|ref|YP_001475998.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
 gi|157319772|gb|ABV38870.1| type IV pilus secretin PilQ [Shewanella sediminis HAW-EB3]
          Length = 682

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 54/281 (19%), Positives = 107/281 (38%), Gaps = 25/281 (8%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           ++    + +   +      + V  L+ +      QV ++  +  V+ D+ +++G +  +T
Sbjct: 399 VAVDERTNTLLVKDTEDILENVHRLIEVLDIPIRQVLIESRMVTVKDDVSEELGIRWGVT 458

Query: 221 GSSSGPSKS--------------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                   S                       +      +    F V  + D    +  L
Sbjct: 459 DQQGDKGTSGSLEGAESISNGIVPALVDRLNVNLPASTGAARVAFHVAKLADGTVLDMEL 518

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE+      +A P +   S Q A++   G  +    +SS+GA +++     + L  TP
Sbjct: 519 SALEKEDKGEIIASPRIMT-SNQKAAYIEQGVEIPYLEASSSGAATISFKKAVLSLRVTP 577

Query: 321 TVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            +    R+ L ++        V+    G   S   ++  T V +  G TIVL G+ +  +
Sbjct: 578 QITPDNRVILDLEITQDSQGKVVATPLGSAVSIDTQRIGTQVLVDHGETIVLGGIYQQQL 637

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +P+L  IP +G LFR++       E+ I  TP ++
Sbjct: 638 INRVSKVPVLGDIPFVGFLFRSTTDENNRQELLIFVTPKII 678


>gi|107104140|ref|ZP_01368058.1| hypothetical protein PaerPA_01005213 [Pseudomonas aeruginosa PACS2]
          Length = 714

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 45/269 (16%), Positives = 93/269 (34%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E      K +G +          S        G      
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 496

Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                                +  + D    +  L A+E+    
Sbjct: 497 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  ++  +  E +P L 
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
           ++P LG LFR       + E+ +  TP +
Sbjct: 676 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 704


>gi|163749924|ref|ZP_02157169.1| general secretion pathway protein D [Shewanella benthica KT99]
 gi|161330438|gb|EDQ01417.1| general secretion pathway protein D [Shewanella benthica KT99]
          Length = 711

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 110/305 (36%), Gaps = 47/305 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +  +ET             +   V+N L+I    QV ++  I EV        G Q + 
Sbjct: 313 IMAHAETNALVITAQPDQMRTIDSVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGIQWAT 371

Query: 220 TGSSSGPSKSFAADFGGKFV--------------------------------------SE 241
                    +     G                                          + 
Sbjct: 372 AAGGMTQFNNLGPTIGEVGAGVWLAQDQKASQTCTGSGDTQTCTKNPDTPGDITILAQAL 431

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------Y 295
           G    +   +    F  ++ A+   T    LA P++T +  Q A+F  G +         
Sbjct: 432 GKINGMAWGVAMGDFGALIQAISSDTRSNILATPSITTLDNQEATFIVGDEVPILTGSQS 491

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
            +  +S   T+V   + GV L   P +     + L I+ EVS      +     ++  R+
Sbjct: 492 SSNGNSNPFTTVERREVGVKLKVIPQINEGTSVKLTIEQEVSGINGKTSVD--VTFATRR 549

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV + SG  +VL GL+ +++Q+  + +P L  +PI+G LFR+S  ++++  + I   
Sbjct: 550 LTTTVMVDSGQIVVLGGLISEEVQESVQKVPFLGDLPIIGHLFRSSSSSKKKKNLMIFIK 609

Query: 416 PFLVK 420
             +++
Sbjct: 610 ATIIR 614


>gi|121593158|ref|YP_985054.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
 gi|120605238|gb|ABM40978.1| type IV pilus secretin PilQ [Acidovorax sp. JS42]
          Length = 696

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 50/246 (20%), Positives = 91/246 (36%), Gaps = 23/246 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSIT--------------------GSSSGPSKSFAAD 233
            QV ++  I E R    + +G +                        GS   P  S  A 
Sbjct: 447 RQVMIEARIVEARDTFGRSLGVRLGGGSRTGGSAVGGTYDNVAGPTGGSGMSPFVSLPAS 506

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G         S+            L A+E     + ++ P L       A    G ++
Sbjct: 507 LSGVSTVGSFALSIFNSNASRFLSLELSAMEADGQGKIVSSPRLITADQTKALIEQGTEY 566

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            Y   +   GAT++      + L  TP +   G I L +  +V++   G       +   
Sbjct: 567 PYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNIILDL--DVNKDSRGETTTQGVAIDT 623

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +   T V + +GGT+V+ G+ + +    +  IP+L  +P++G LF+N      + E+ + 
Sbjct: 624 KHVKTQVLIENGGTVVIGGIFEMEETNQENKIPVLGDVPVVGNLFKNRTKESTKREMLVF 683

Query: 414 ATPFLV 419
            TP ++
Sbjct: 684 ITPKVI 689


>gi|330446773|ref|ZP_08310424.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490964|dbj|GAA04921.1| pilus (MSHA type) biogenesis protein MshL [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 539

 Score =  171 bits (433), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 69/309 (22%), Positives = 121/309 (39%), Gaps = 31/309 (10%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +++E V   ++  G  R++  S +A  +S        R        K+ + +     + Q
Sbjct: 213 VQLEKVVSGMIGSGDGRSVMVSPQAGLISVRAFPNELREV------KEFLGMSQKRLKRQ 266

Query: 196 VTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           V L+  I EV  D   Q G   S       G + G +       GG  +S+         
Sbjct: 267 VVLEAKIMEVTLDDSYQQGINWSYLTKSGNGITMGTAAIVDGLPGGNAISDLLGGQTNIT 326

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
           +   +F  V+  L     +  L+ P +TA + Q A    GG   + T  SS+        
Sbjct: 327 ISDGNFNAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNT 386

Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---------- 350
                S+T    G+ L  TP +   G + L +   V +        ++ +          
Sbjct: 387 VSPDVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEEKKIEVGTAKPMVLPLAK 446

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +   +G  +V+ GL+K  I      +PLL  IP +G LFR     +++TE+
Sbjct: 447 STIRESDSIIHARTGDVVVIGGLMKSTINDQVSKVPLLGDIPGVGNLFRQINKVKKKTEL 506

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 507 VILLKPTVV 515


>gi|170729053|ref|YP_001763079.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
 gi|169814400|gb|ACA88984.1| general secretion pathway protein D [Shewanella woodyi ATCC 51908]
          Length = 714

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 104/283 (36%), Gaps = 47/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATAAGGGTQFNNLGPTIGEIGAGV 396

Query: 236 ----------------------GKFVSEGGDFSVKGVLDR----------FSFETVLHAL 263
                                     + G    +   L +            F  ++ A+
Sbjct: 397 WNARDQKASQTCSGSGDNQTCTDNPDTPGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLH 317
              T    LA P++T +  Q ASF  G +    T +       S    +V   + GV L 
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPILTGAQNSSNGNSNPFQTVERKEVGVKLK 516

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS            ++  R+  TTV   SG  +VL GL+ ++
Sbjct: 517 VVPQINEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +Q+  + +P L  IPI+G LF++S   +++  + +   P +++
Sbjct: 575 VQESVQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 617


>gi|330881978|gb|EGH16127.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 334

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 105/263 (39%), Gaps = 26/263 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++ L+     QV ++  I EV  D   Q G Q      +           G    + G
Sbjct: 6   EVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQTGNLNGSGGFGGVNLGGSGLNTGG 64

Query: 243 -----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G  ++ G+ +    + +  AL+       L+ P L  +  ++A
Sbjct: 65  STSIDVLPTGLNVGVVRGAVTIPGIGEVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAA 124

Query: 286 SFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           S   G    + T         +S+    +V   + G+ L+  P +   G + L I  EVS
Sbjct: 125 SIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQEVS 184

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +         R  DT++ L  G  +VL GLL+D   Q  E +P LS+IP+LG L
Sbjct: 185 NVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVL 244

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FRN   +  +T + +   P++++
Sbjct: 245 FRNEARSTSKTNLMVFLRPYIIR 267


>gi|114797223|ref|YP_760566.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
 gi|114737397|gb|ABI75522.1| general secretion pathway protein D [Hyphomonas neptunium ATCC
           15444]
          Length = 653

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/480 (16%), Positives = 153/480 (31%), Gaps = 59/480 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L R      +  +     +  ++      N  V+      + + ++I   L++   +  
Sbjct: 130 KLDRANAMEAAQMIKPLLDAQGQVVANAGTNTLVVVDYASNLERVRRIIETLDRDQTVTE 189

Query: 63  PVDVQDV-LVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
            V + +V  V   T    +   P      G+   + + +        +L  D        
Sbjct: 190 TVPLTNVPAVEIETVLTRLQGDPSAQ--QGQAPSRLSAVASLTSNSIILRGDATSVERAK 247

Query: 122 HLEMTLRRFIADSN-IRVEMVS-----DTVVLHGMVRTIQDSQRAVELSETFLSQSG--- 172
            + + L       + +RV  ++     + V +   V      QRA   +           
Sbjct: 248 RVALELDATNPQRDHVRVITLNYADAEEVVPILERVANSMAMQRAPSETAPVAQTIAHHG 307

Query: 173 --------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                    N     + ++V+  L++    QV ++  I E+  D  +++G Q  + G+  
Sbjct: 308 PTNSLIISANPETILAMERVVTALDVRRP-QVMVEAIIVEMSDDAARELGLQFLLAGTGG 366

Query: 225 GPSKSFA--------------------------------ADFGGKFVSEGGDFSVKGVLD 252
               +                                  A       S G      G   
Sbjct: 367 DVPFASTNFSRAAPNLLALTGALVTDAFEDPAAENPFREAAISSLTGSSGLTLGFGGTSG 426

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-----SSTGATSV 307
              F  +L+A+E  TA R L+ P    ++  +++   G +    T       +S    +V
Sbjct: 427 DNLFGVILNAVEDDTASRILSTPFGMTLNNATSALIVGQEIPVTTGQVLGEANSNPFRTV 486

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGG 366
              D G+ L  TP +     + L I+ EVS     V           R+   +V    G 
Sbjct: 487 ERKDIGIQLEVTPRIGENDTVRLDIRQEVSSVFGSVGTVTPDLILDKREIRASVLADDGE 546

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            IVL GL++         +P+L  IP +G LFR+         + +   P +V+  A   
Sbjct: 547 IIVLGGLVEQTDTLRDTKVPVLGDIPGVGRLFRSEGKAATRRNLMVFIRPTIVRNKADAQ 606


>gi|220932698|ref|YP_002509606.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219994008|gb|ACL70611.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 602

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 70/296 (23%), Positives = 115/296 (38%), Gaps = 21/296 (7%)

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             I    I VE V   +           +     L E         Q   +  K+ +  +
Sbjct: 302 ELIPMEYIEVEKVPQLL------PNNFPAANVKVLKEKNALLVTGTQSDINKLKEYIKQI 355

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           +      V ++  + E+ R+  +    +  +                  F +  G  + K
Sbjct: 356 DTRIPLIV-VEAVVVELTRNRQENPVIKLGMEYDGEEE---------LLFDTSMGKLTYK 405

Query: 249 GVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---KTVSSSTGA 304
            VLD    F   + AL     +   A P +T ++GQ A    G    Y   +T       
Sbjct: 406 SVLDLPDDFYLKIEALVTEGLLTVKARPNITTLNGQQAMIDVGTVQYYKVKQTDGEGNEE 465

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T   + + GV L  TP V S G I L+++ +VS       A   P    R+ DTTV +  
Sbjct: 466 TQYQSINAGVSLTVTPWVSSSGEITLKLRPQVSNI-GAAAAEGPPQVSRREVDTTVRVKD 524

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+V+ GL++D        +P L+ IP++G LF++   N  +TE+ I  TP ++K
Sbjct: 525 GQTVVIGGLIQDVGTNTTSKVPFLANIPLIGKLFKSRNNNVNQTELIIFITPRVLK 580


>gi|120554944|ref|YP_959295.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
 gi|120324793|gb|ABM19108.1| general secretion pathway protein D [Marinobacter aquaeolei VT8]
          Length = 649

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/465 (18%), Positives = 168/465 (36%), Gaps = 63/465 (13%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-VQDVL 70
           +   L         L  +  ANA +++     I + ++I   L+     +V V  +Q+  
Sbjct: 141 LVPILRPLVAKYGHLAGVAAANALIVSDHASNIARIEQIVRELDSPSKYEVEVIQLQEAW 200

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQA-----NVILIGHDGKQMLNLDILIERDIAHLEM 125
           V D     +   +P  +   G+  G+      +V       + +L  D      +  L +
Sbjct: 201 VGD-MVTLLQELAPEEL---GRAGGENAARKYSVTADERSNRLILRGDETFRDKMRGLIL 256

Query: 126 TLRRFIADSNIR-------VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------ 172
            L +  A             +  + T +L G++  +     A   S       G      
Sbjct: 257 QLDQPSASGGTTKVIRLRHADAKTLTEILKGVMGEVVKEGSAGGSSGGSAGNPGSSFSVF 316

Query: 173 -----------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                       +      +++++  L++    QV ++  I E+  ++  Q+G Q +   
Sbjct: 317 ADEGLNALVVRGDPSLMQEAEQIVAQLDVR-RAQVMIEAAIVEISDELGDQLGVQLAAGD 375

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--------------------RFSFETVLH 261
            S+G       +        G +  +  ++                       ++  ++ 
Sbjct: 376 ESAGSFPVLGTNLTSGQGMVGLNSVIGALVGDTIPQLAGGLTVGAGQRDEDGVTWGLLIQ 435

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314
           AL  ++A   L+ P++  +  Q +    G    ++T  S+          T++   D G+
Sbjct: 436 ALSSSSAANLLSTPSIITLDNQESEIIVGQNVPFRTGQSTVTGDGTTNPFTTIERRDVGL 495

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            L  TPT+ + G + L ++    +     V+         R+  TTV    G T+VL GL
Sbjct: 496 SLKVTPTISADGLVRLVVEQTTEDISTTSVDGASDLITNKREIKTTVLADDGETVVLGGL 555

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +KDD Q  K  +PLL  IP+LG LF +    R +  + +   P +
Sbjct: 556 IKDDYQVSKSKVPLLGDIPVLGRLFSSESETRVKRNLLVFLRPTI 600


>gi|313110575|ref|ZP_07796459.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
 gi|310882961|gb|EFQ41555.1| secretion protein XqhA [Pseudomonas aeruginosa 39016]
          Length = 776

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLHGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+ +    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634


>gi|145300802|ref|YP_001143643.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|88866576|gb|ABD57345.1| MshL [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142853574|gb|ABO91895.1| MSHA biogenesis protein MshL [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 556

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 105/273 (38%), Gaps = 33/273 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------EGG 243
           + QV L+  I EV  +   + G   S   +S   +K                        
Sbjct: 274 KRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGSSLSPTQLPTTPNQIFTAL 333

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302
                  +   +F   ++ L+    + TL+ P +TA + Q A    G    + T +S+T 
Sbjct: 334 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYFVTKASTTI 393

Query: 303 -----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
                          +T    G+ L  TP +   G++ L I   V +        DM + 
Sbjct: 394 TSNSSGVSDRTPNVELTPFFSGISLDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTS 453

Query: 352 -----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                       +R++DT V+  +G  IV+ GL+K D Q++   +PLL  IP +G  F N
Sbjct: 454 GGRLELPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWIGEAFTN 513

Query: 401 SRFNREETEIFIAATPFLV-KPVAMRDLSRPDD 432
            R + ++ E+ I   P +V K     +L R  D
Sbjct: 514 RRESTKKVELVILLKPTVVEKDTWQNELKRSAD 546


>gi|71280237|ref|YP_271224.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
 gi|71145977|gb|AAZ26450.1| MSHA biogenesis protein MshL [Colwellia psychrerythraea 34H]
          Length = 609

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 59/300 (19%), Positives = 110/300 (36%), Gaps = 32/300 (10%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V  G  R++  S +A  ++   L Q         + KK +         QV ++  I EV
Sbjct: 249 VGTGEGRSVIVSPQAGLVTVRALPQELT------AVKKFITATESHLHRQVIIEAKIMEV 302

Query: 206 RRDILKQIGFQHSITGSSSGP-------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
             +   Q G + +      G        + +   +     +      +         F  
Sbjct: 303 TLNDDFQQGIKWNKVLDQVGSADIIYSTTGNVVGNVISNTIGGVNSINFSKQTSGSDFSG 362

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----------SSSTGATSVT 308
           V+  L+    ++ L+ P +TA + Q A    G    + T           +++T    +T
Sbjct: 363 VIELLQTQGNVQVLSSPRITATNNQKAVIKVGEDEYFVTEVSSTTTTGTSTTTTPEVELT 422

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPSYRVRKADTT 359
               G+ L  TP +   G + L +   V+         +         +    VR++DT 
Sbjct: 423 PFFSGIALDVTPQISKDGSVILHVHPSVTITEEQSKTIKIGDTTLVLPLAQSSVRESDTI 482

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   SG  +V+ GL++     ++   P+L  IP LG LF+N     ++ E+ I   P +V
Sbjct: 483 IRANSGEVVVIGGLIETYNIDIESKTPILGDIPYLGELFKNKSQKSQKRELVIMLKPIVV 542


>gi|331010889|gb|EGH90945.1| general secretion pathway protein D [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 778

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 426 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 484

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 485 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 544

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 545 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 604

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 605 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 664

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 665 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 711


>gi|262373636|ref|ZP_06066914.1| general secretion pathway protein D [Acinetobacter junii SH205]
 gi|262311389|gb|EEY92475.1| general secretion pathway protein D [Acinetobacter junii SH205]
          Length = 709

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 107/326 (32%), Gaps = 47/326 (14%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +A   +  + V   +   G V     +   +                    +K+++LL+
Sbjct: 387 RLAGGELSADNVGGVLSARGTVSIDPRTNTLI---------INDTSQKIDQIRKMIDLLD 437

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--------------------- 228
           ++ + QV ++  I     D  K++G +  I       +                      
Sbjct: 438 VSVK-QVMIEARIVRASTDFTKEMGVKWGILSQGIASNNDLLVGGSDTTLWNLREPTADS 496

Query: 229 -------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                        +   + G               L  F  +  L A++       ++ P
Sbjct: 497 ETGGWKYDIERPDNLNVNLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVVSTP 556

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            +     Q+A   SG Q  Y + +             D  + L  TP++   G++ +++ 
Sbjct: 557 KVLTADKQAAKIESGTQIPYSSSTGGGANAVPKTEFIDATLSLDVTPSITPEGKVMMKLN 616

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                P      G + +      DT V + +G T+VL G+ + +    +  +P L  +P 
Sbjct: 617 ITKDSPGTPTPTGQL-TINKNTIDTNVVVDNGETVVLGGIFEQENINSQTKVPFLGDLPY 675

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           +G LFR       + E+ I  TP +V
Sbjct: 676 VGKLFRRESKQDNKRELLIFVTPRIV 701


>gi|237801193|ref|ZP_04589654.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024050|gb|EGI04107.1| general secretion pathway protein D [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 333

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/308 (20%), Positives = 111/308 (36%), Gaps = 21/308 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
            G     +    +  ++    S     +   +  K++ + +        QV ++  I EV
Sbjct: 12  SGSAGNGKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNPPLQVQIETRILEV 71

Query: 206 RRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
                  +G Q         S T  +   +       G    + G   +        + +
Sbjct: 72  SLTGELDMGVQWYLGRLAGNSGTTGNVANTAGSQGALGTGGAALGATDAFFYSFVSNNLQ 131

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHD 311
             L ALER    + L+ P+L  ++ Q A    G        S +T  ++      V    
Sbjct: 132 VALRALERNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQ 191

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTVELPSGGTI 368
            GV+L   P +   G + + IQ +VS      +       P    R   T V   SG TI
Sbjct: 192 TGVILDVVPRINPGGLVYMDIQQQVSNADNNASNNDANGNPRISSRSVSTQVAAQSGQTI 251

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L GL+K D  +  + +P L +IP L  LF  +  ++  TE+ +  TP ++   +     
Sbjct: 252 LLGGLIKQDNAETVDAVPYLGRIPGLRWLFGTTSKSKGRTELIVLITPRVI--TSSSQAR 309

Query: 429 RPDDHYSV 436
           +  D Y  
Sbjct: 310 QVTDDYRQ 317


>gi|326315687|ref|YP_004233359.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323372523|gb|ADX44792.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 804

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 57/276 (20%), Positives = 103/276 (37%), Gaps = 40/276 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG- 249
               QV ++  I EV  + + + G Q      + G              + GG+ ++   
Sbjct: 436 GRRAQVLVESLIVEVSANKVAEFGIQWQGVMGNYGNGTIGVIGTNSSASTTGGNANILNL 495

Query: 250 ------------------------------VLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                         +   +    + + LE       L+ P L  
Sbjct: 496 ALAAATGNATSIASSASGLGKGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLMT 555

Query: 280 ISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  + A    G    + T S +           T+V   D G++L   P +   G + L 
Sbjct: 556 LDNEEAQIIIGNNVPFVTGSYANTTGSSTVNPFTTVERKDVGLMLRVRPQINENGTVKLS 615

Query: 332 IQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +  EVS+      NA + P+   R  ++TV +  G  IVL GLL+D     ++ +PL+  
Sbjct: 616 LYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGNVIVLGGLLEDRYSMGQDKVPLMGD 675

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P++G LFRN    R++T + +   P +++  A  D
Sbjct: 676 LPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 711


>gi|291612584|ref|YP_003522741.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
 gi|291582696|gb|ADE10354.1| type IV pilus secretin PilQ [Sideroxydans lithotrophicus ES-1]
          Length = 688

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 18/250 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------KSF 230
           +  L++    QV ++    E      + +G + S TG  S  +               + 
Sbjct: 437 VKQLDVPVR-QVMIEARFVEAGETFNQTLGGRLSYTGPGSTVAGGGFAGPAGNRAALSTT 495

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +   G   V+ G   ++            L+A E     + +A P +       A+  SG
Sbjct: 496 SLLPGAGSVTGGMTLNLFNAAATKVLTLELNASELDGTTKNIASPRVVTGDKTPATIESG 555

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y   +SS GATSV      + L  TP +     +G+++   VS+  +G     +PS
Sbjct: 556 VEVPYLQATSS-GATSVAFKKAVLGLTVTPQITPDDHVGMKLS--VSQDTVGNIYSGVPS 612

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +K DT V + +GGT+V+ G+   D    KE IPLL  IPILG LF+     + + E+
Sbjct: 613 INTKKVDTQVLVDNGGTVVIGGVYTQDATDSKEQIPLLGDIPILGWLFKTDTIVKAKKEL 672

Query: 411 FIAATPFLVK 420
            +  TP +VK
Sbjct: 673 LVFITPKIVK 682


>gi|288574989|ref|ZP_06393346.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570730|gb|EFC92287.1| type II and III secretion system protein [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 570

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/440 (18%), Positives = 148/440 (33%), Gaps = 74/440 (16%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL----VSDPTKADVVVHSPR----- 85
            +           ++IS+    V I  V   + D++    V DP+ A++   + R     
Sbjct: 150 RIPVDGSDPFQTNRRISVDFRSVDIQDVFRMLADMMKVNIVLDPSVAEIPPLTMRFDEAP 209

Query: 86  --TMY-----LFG---KNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRF 130
              ++     L+G     VG+  VI          G++   +  +   D+  L   L   
Sbjct: 210 LREVFGYLMRLYGLSYAKVGKTLVIGSPEGISKVMGEEKTRVYDVAYSDVKTLPDMLGGL 269

Query: 131 --IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             I    I V+     + + G    + D +R ++  +                       
Sbjct: 270 TTIPKEKITVDERLGRLFVKGSENQLSDFERVLQTVDD---------------------- 307

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------------ 236
                 QV L+  I E++ +   ++    +        S S +   GG            
Sbjct: 308 ---PGKQVMLRARIIEIKDEASDELETMLNAVYKHWWLSTSSSGAEGGYSYVKDPDSYNP 364

Query: 237 --------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                        G +    G       +T L AL  A   + LA P++  +SGQ AS  
Sbjct: 365 PTGEDRPGGIEFPGIEIPDIGTGGIRLLDTGLKALVTANKGKVLANPSVITVSGQKASIK 424

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345
                 Y +     G  + +  + G  L FTP V   G I + +     EV     G   
Sbjct: 425 LVENLKYISARDDAGNPTYSDEEVGPKLEFTPLVGRDGVISVELSIATGEVIAWKEGNQG 484

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + P    R+  T++ +  G   V+ GL  +   +    IP+L  IP+LG  F++     
Sbjct: 485 EEFPQTSEREVVTSIRVRDGEPFVVGGLFNERHTENTTKIPILGDIPLLGEFFKSKSKTD 544

Query: 406 EETEIFIAATPFLVKPVAMR 425
           + TE+ +   P+++      
Sbjct: 545 DRTEVVMVVIPYILNVTDGP 564


>gi|308535177|ref|YP_002137419.2| type II secretion system protein GspD [Geobacter bemidjiensis Bem]
 gi|308052522|gb|ACH37623.2| type II secretion system protein GspD, putative [Geobacter
           bemidjiensis Bem]
          Length = 640

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 64/255 (25%), Positives = 108/255 (42%), Gaps = 15/255 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVS 240
           +V+  L+     QV ++  IAEV  +  K++G Q  +   +S  + S    F   G    
Sbjct: 346 QVIQKLD-RRSRQVFVQAMIAEVSANKAKELGLQWGVVTGASNGTLSTVGTFDPFGAVAG 404

Query: 241 EGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G  ++ G L           F   L AL+   A+  L+ P +     + A    G   
Sbjct: 405 LTGTLTLAGQLGITPPDAGVALFPATLKALQSNGALNVLSTPNIMTSDNKEAEIFVGENV 464

Query: 294 LYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDM 348
            + + ++ T       S+   D G++L   P +     I L I  E+S     G      
Sbjct: 465 PFLSGTNLTSTGLSQQSIERKDTGIILKIKPQISEGEYIKLDIYQEISAVKDFGTATNPN 524

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R A T+V + +  T+++ GL++D  Q  +  IPLL  IP+LG LF+  +  R++T
Sbjct: 525 LGSTKRSAKTSVVVKNTDTVIIGGLIQDTDQVTESKIPLLGDIPLLGWLFKTKKTTRDKT 584

Query: 409 EIFIAATPFLVKPVA 423
            + I  TP ++K   
Sbjct: 585 NLLIMLTPRIIKDAR 599


>gi|116688415|ref|YP_834038.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
 gi|116646504|gb|ABK07145.1| type IV pilus secretin PilQ [Burkholderia cenocepacia HI2424]
          Length = 543

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/435 (17%), Positives = 146/435 (33%), Gaps = 42/435 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +   PP + ++AA       +    ++IS+ L  V +      +             
Sbjct: 87  GPPIPLAPPARMSDAAA--RQPGDADDARRISLNLQGVGLAAAFDAIAR-FTGLNIVVGE 143

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRV 138
            V    T+ L      +A   L+   G  M    +++     A L    R       +  
Sbjct: 144 QVRGTVTLRLNNVRWREAFDTLLDTHGLAMSRRGNVIWVTPAAELAARERERF---EMHA 200

Query: 139 EMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------- 190
                  +     V     +Q    L      Q   ++   +++    NLL +       
Sbjct: 201 RAADLEPLASRTFVLHYPRAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRI 260

Query: 191 -----------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK----------- 228
                          QV ++  I E  +   + +G + ++      P+            
Sbjct: 261 TQIAGLIDAIDRPSRQVRIEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARN 320

Query: 229 --SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
               AA   G F +    F++         +  L ALE     + ++ P +       A 
Sbjct: 321 ALDLAARPLGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAI 380

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G    
Sbjct: 381 VEQGSELPYQ-AKVGNGMSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTA 437

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   +   T VE+ +GGT+ + G+ +   +     +PLL KIP LGALFR+     +
Sbjct: 438 AGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQ 497

Query: 407 ETEIFIAATPFLVKP 421
             E+ +  TP +V  
Sbjct: 498 RNELVVFITPTVVDA 512


>gi|89093502|ref|ZP_01166450.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
 gi|89082192|gb|EAR61416.1| type 4 fimbrial biogenesis protein PilQ [Oceanospirillum sp. MED92]
          Length = 702

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 98/249 (39%), Gaps = 25/249 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS----------------------SSGPSKSFA 231
           +QV ++  +     ++ K +G +     +                      ++G + +  
Sbjct: 451 EQVLVEARLVNATSNVTKDLGVKWGFGYNDVDNGKGWIVDNSIGNVNFGNTTAGNTSNLM 510

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D G    S G                 L ALE       +++P +   +G+ A   SG 
Sbjct: 511 VDLGASVTSPGTIAIGFKPGASSLLALELSALETDGKAEIVSQPKVLTTNGKQAKIESGS 570

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y+TV    G  S+   D  + L  TP +    RI + +          V      S 
Sbjct: 571 EIPYQTV--EDGEVSIEFKDVVLSLDVTPRINPGDRIAMDLLITQDSI-GQVLPNGEISI 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
              +  TTV +P G TIVL G+ K++  +    +PLL  +PI+G LFRN     E+TE+ 
Sbjct: 628 DNNELQTTVVVPDGQTIVLGGVFKNETSETINKVPLLGDLPIMGPLFRNKENQAEKTELL 687

Query: 412 IAATPFLVK 420
           I  TP LV+
Sbjct: 688 IFITPKLVR 696


>gi|119898381|ref|YP_933594.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119670794|emb|CAL94707.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 675

 Score =  171 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/434 (17%), Positives = 158/434 (36%), Gaps = 59/434 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD-------VQDVL--VSDPTKA 77
           P   E   A + +    + +   ++   ++ +  +  V        +++VL  +    + 
Sbjct: 186 PVTLEFREAPLRVVFEALARASGLNFVFDRDVRAESKVTLFVRSSTIEEVLGLIGATQQL 245

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           +  + +  ++ ++     +          + +     L   D       +R+ +   ++ 
Sbjct: 246 ERKMLNANSVLVYPATPAK-----QKEYVELVTRSFYLANADAKQAMTMVRQLVKSKDVF 300

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V+   + VV+            AV L+                 ++V+  L++A  + V 
Sbjct: 301 VDEKLNMVVIKDTP-------DAVRLA-----------------ERVLASLDVAEPE-VM 335

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---- 253
           L+V + EV R+ L+ +G ++         + +  +                 +       
Sbjct: 336 LEVEVLEVSRNKLQDLGIEYPTQVGYGLLTPNVTSTVSTAAGFATSTTLGGELAKGMINL 395

Query: 254 ----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301
                      +   VL+          LA P +   + + A    G +    T +++  
Sbjct: 396 RDRGSLVPYVSNPGAVLNLRAEDGDTSLLANPRIRVKNREKAKIHIGEKLPVFTTTATAN 455

Query: 302 -TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKAD 357
              + SV   D G+ L   P V     + +++  EVS  V  V             R A 
Sbjct: 456 VGVSASVNYLDVGLKLDVEPAVTLEDEVVIKVALEVSSIVKEVTGPSSSLAYQVGTRSAA 515

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TT+ L +G T VLAGL+ D+ +     +P L ++P++G LF   R +  +TE+ +  TP 
Sbjct: 516 TTLRLANGETQVLAGLINDEERSSARRLPGLGELPVVGRLFSAQRDSNTKTEVVLLITPR 575

Query: 418 LVKPVAMRDLSRPD 431
           +V+ V    L+R D
Sbjct: 576 IVRNVVAPSLARAD 589


>gi|330940238|gb|EGH43375.1| general secretion pathway protein D [Pseudomonas syringae pv. pisi
           str. 1704B]
          Length = 295

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 58/242 (23%), Positives = 92/242 (38%), Gaps = 17/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  I EV+      +G Q         S T  +   +       G    +    
Sbjct: 21  PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALAST 80

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTV 298
            +        + +  L ALE     + L+ P+L  ++ Q A    G              
Sbjct: 81  DAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNT 140

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYRVRK 355
           ++ T  +SV     GV+L   P +   G + + IQ +VS       G  A   P    R 
Sbjct: 141 NAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTDTTGNGANGNPRISTRS 200

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  T
Sbjct: 201 VATQVAAQSGQTVLLGGLIKQDNAESVSAVPYLGRIPGLRWLFGNTSKSKGRTELIVLIT 260

Query: 416 PF 417
           P 
Sbjct: 261 PR 262


>gi|1246517|emb|CAA60131.1| pulD-like [Escherichia coli]
          Length = 596

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 49/269 (18%), Positives = 99/269 (36%), Gaps = 21/269 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     + V++ L+I    QV ++  IAE++      +G Q     +      S  
Sbjct: 265 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFTSTG 323

Query: 232 ADFGG-------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                             +  +      +     + ++  +L AL  ++    LA P++ 
Sbjct: 324 LPITTMVQTRQNEILDSDQSNALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIV 383

Query: 279 AISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    A+F  G +    + S +T       +V     G+ L   P +     + L I+ 
Sbjct: 384 TLDNMEATFNVGQEVPVLSGSQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQ 443

Query: 335 EVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS   +  +        ++  R     + + +  T+V+ GLL   I+  +  +PLL  I
Sbjct: 444 EVSGVADTAVATTTDLGATFNTRTVTNAMLVGNCETVVVGGLLDKSIRGSESKVPLLGDI 503

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P+LG LFR       +  + +   P +++
Sbjct: 504 PVLGHLFRAKSEQTAKRNLMLFIRPTIIR 532


>gi|311105841|ref|YP_003978694.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
 gi|310760530|gb|ADP15979.1| general secretion pathway protein D [Achromobacter xylosoxidans A8]
          Length = 790

 Score =  170 bits (431), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 106/273 (38%), Gaps = 30/273 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239
           +V++ L+     QV ++  I EV      + G Q      +    G S     + GG  +
Sbjct: 414 EVIDQLDQR-RAQVLVESLIVEVSEAKAAEFGIQWMTGAGNINSDGTSFIGGTNLGGSGI 472

Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
           +  G  ++ G+                     +   +  A+E       L+ P L  +  
Sbjct: 473 TGKGPTTIDGIGSGLTLGVVKGTVDVLGNKVINLGVLARAMENTGEANILSTPNLLTLDN 532

Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           QSAS   G    + T          S+    ++   D G+ L+  P +   G + L I  
Sbjct: 533 QSASILVGKTVPFVTGQYVTSGSNGSTNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 592

Query: 335 EVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS       NA        R  DT+V +  G  IVL GLL+D++      +PLL  +P+
Sbjct: 593 EVSSIDESRSNATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLSTNSVPLLGSLPV 652

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +G+LFR     R +T + +   P++V+      
Sbjct: 653 IGSLFRYDSRKRTKTNLMVFLRPYVVRDANRTA 685


>gi|117625269|ref|YP_854407.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
 gi|115514393|gb|ABJ02468.1| putative type II secretion protein GspD [Escherichia coli APEC O1]
          Length = 686

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|115350365|ref|YP_772204.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
 gi|115280353|gb|ABI85870.1| type IV pilus secretin PilQ [Burkholderia ambifaria AMMD]
          Length = 553

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +     L      Q   ++   +++    NLL +                      QV 
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
           ++  I E  +   + +G + ++      P+   AA                G F +    
Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520


>gi|163751006|ref|ZP_02158238.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
 gi|161329296|gb|EDQ00294.1| MSHA biogenesis protein MshL [Shewanella benthica KT99]
          Length = 560

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 55/250 (22%), Positives = 92/250 (36%), Gaps = 24/250 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-----PSKSFAADFGGKFVSEGGDFSVK 248
            QV ++  I EV      Q G          G        S         ++        
Sbjct: 280 RQVIIEAKILEVTLSDGYQQGINWQNVLGHVGDTDIEFGTSTGGGSLSDQITSVIGGVTS 339

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                 +F T++  L+    +  L+ P +T ++ Q A    G    + T  SST  + +T
Sbjct: 340 LKFSGTNFSTMISLLDTQGDVDVLSSPRVTVLNNQKAVIKVGTDEYFVTNVSSTTISGIT 399

Query: 309 THDY----------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------ 352
                         G+ L  TP +   G + L I   V      +    +          
Sbjct: 400 PITTPEVELTPFFSGIALDVTPQIDGDGNVILHIHPSVINIKEQIKTIKISGSTLELPLA 459

Query: 353 ---VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL+K +  +L   +PLL  IP +G LF N   + ++TE
Sbjct: 460 RSDIRESDTVIMARSGDVVVIGGLMKSENIELISKVPLLGDIPFIGELFTNRAKSLKKTE 519

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 520 LVILLKPTVV 529


>gi|119899935|ref|YP_935148.1| type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
 gi|119672348|emb|CAL96262.1| probable type 4 fimbrial biogenesis protein [Azoarcus sp. BH72]
          Length = 707

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 56/268 (20%), Positives = 108/268 (40%), Gaps = 33/268 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227
           +++N +++A   QV ++  I E  ++  + +G +                   GSS   S
Sbjct: 435 RLINEIDVA-PRQVLIEARIVEASKEFARDLGVRLGYGDAKDKSLGGGAKLGFGSSEFVS 493

Query: 228 KSFAAD-------------FGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIRT 271
            +  A               G  F+  G       + +          L ALE     R 
Sbjct: 494 STTTAGTVDFQRNVGESATSGSGFLPTGFGSLNLTLFNSSLTRFLNLELAALESDGRGRV 553

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +   +   AS   G +  Y    SS+GAT+V      + L   P +   GR+ L 
Sbjct: 554 VSSPRVLTANQVEASIEQGTEVPYLQA-SSSGATNVAFKKAVLSLKVKPQITPDGRLQLS 612

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           I+     P+      ++P    +   + V + +GGT+V+ G+ +++    ++ +P+L ++
Sbjct: 613 IEVNKDRPLFESAVLNVPPIETKNVKSEVLIDNGGTVVIGGIYEEEETSNEDRVPILGEL 672

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P++G LFR         E+ +  TP +V
Sbjct: 673 PVVGFLFRTRSKISNRKELLVFITPKIV 700


>gi|332702379|ref|ZP_08422467.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552528|gb|EGJ49572.1| general secretion pathway protein D [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 677

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 128/348 (36%), Gaps = 27/348 (7%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G+  + +  L   D   L   L   +  +              G+V T   S     L+
Sbjct: 283 RGQGNVRVYKLEHADATELADVLNGLVGKTTGSAAAGGQAPKESGVV-TPVISSGVTILA 341

Query: 165 ETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----- 217
           +   +       A+  +  ++++  L+     QV ++  I EV      + G +      
Sbjct: 342 DKATNSLVITAGADDFTLIEELLRDLD-TPRKQVLVEALIMEVSSTENVEFGSKLQGVVD 400

Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR---FSFETVLHALERAT 267
                   + G  S P+    +      V   G  ++   ++     +   ++ A +  +
Sbjct: 401 VGIGGREGVAGGFSNPAGLSESVLNPGTVFGIGAAAIPVTINGVTYTNLNALIAAGKINS 460

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPT 321
               ++ P +  +  Q AS T      Y+T  +S         T  T  D G +L  TP 
Sbjct: 461 DFNIISTPQIMTLDNQEASITVAENRPYQTSQTSTLNDLNNIVTQFTYRDVGTILKLTPQ 520

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +   G I L+I  E SE          +P  R R  +T V +  G T+VL+GL+      
Sbjct: 521 INEGGMIKLKIFQEFSEVDQAATGVSTLPVTRKRTTETAVVIREGQTVVLSGLIGKSATS 580

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDL 427
               +PLL  IP+LG LFR       +T + +  TP +V  P   +DL
Sbjct: 581 SSSRVPLLGDIPLLGWLFRYDTREERKTNLLVFITPRVVDSPEKAQDL 628


>gi|262273882|ref|ZP_06051695.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
 gi|262222297|gb|EEY73609.1| MSHA biogenesis protein MshL [Grimontia hollisae CIP 101886]
          Length = 533

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 137/369 (37%), Gaps = 36/369 (9%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            D +      + L   + G  +       G+   +    +      +E            
Sbjct: 152 VDYLQLQRSGVSLTSISTGAISTDASAGSGEDEKSDRTSVPTGGTVIETLTESQF---WA 208

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  R+I  S +A  +  + + ++    +    +S+K         + Q
Sbjct: 209 QLERAVSGMIGTGDGRSIVISPQAGLITVKAYPNELREVKRFLDASQK-------RLKRQ 261

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251
           V L+  + EV      Q G   S  G+S G      +       G  +S          +
Sbjct: 262 VILEAKVLEVTLSDGYQQGVNWSNIGASIGSGGINISRPETKLAGDMISNVIGGQTNITI 321

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------- 301
              +F +V++ L+    +  L+ P +TA + Q A    GG   + T  SS          
Sbjct: 322 TDGNFSSVMNFLDTQGDVNVLSSPRVTAANNQKAVIKVGGDEYFVTDISSSDTSGDNSDS 381

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--------- 352
                +T    G++L  TP +     + L +   V + V       + +           
Sbjct: 382 GPNIELTPFFSGILLDVTPQIDDDNGVLLHVHPAVVDVVTEEKTIQLGTSSEPYVLPLAK 441

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++D+ +   SG  +V+ GL+K   +++   +PLL  IP LG LFRN    +++TE+
Sbjct: 442 TAIRESDSVIHARSGDVVVIGGLMKSSYEEVVSKVPLLGDIPGLGHLFRNVNRMKQKTEL 501

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 502 VILLQPSVV 510


>gi|116049822|ref|YP_791371.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115585043|gb|ABJ11058.1| secretion protein XqhA [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 776

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+ +    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634


>gi|104781447|ref|YP_607945.1| type II secretion system protein XcpQ-2; signal peptide
           [Pseudomonas entomophila L48]
 gi|95110434|emb|CAK15142.1| putative type II secretion system protein XcpQ-2; putative signal
           peptide [Pseudomonas entomophila L48]
          Length = 787

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 60/267 (22%), Positives = 100/267 (37%), Gaps = 25/267 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++ L+     QV ++  I EV  D   + G Q              A   G       
Sbjct: 460 EVIDQLDQR-RAQVVVESLIVEVGEDDANEFGIQWQAGNLGKNGLFGGANLGGSGLGKGP 518

Query: 243 GDFSVK----------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
               V                 GV      + +  AL+       L+ P L  +  ++AS
Sbjct: 519 TSIDVLPPGLSVGVVDGTVKIPGVGAVLDLKVLARALKSKGGSNVLSTPNLLTLDNEAAS 578

Query: 287 FTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
              G    + +          S+    ++   + G+ L+  P +   G + L +  EVS 
Sbjct: 579 IFVGQTIPFVSGQYVTDGGGNSNNPFQTIQREEVGLRLNVRPQISEGGTVKLDVYQEVSS 638

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                ++        R  DT++ L  G  +VL GLL+D   Q  EGIP LS +P +GALF
Sbjct: 639 VDQRASSAAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYTQSNEGIPWLSSLPGVGALF 698

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMR 425
           R+ R    +T + +   P++V+     
Sbjct: 699 RSERRASNKTNLMVFLRPYIVRDANAG 725


>gi|296389736|ref|ZP_06879211.1| secretion protein XqhA [Pseudomonas aeruginosa PAb1]
          Length = 776

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/508 (18%), Positives = 169/508 (33%), Gaps = 60/508 (11%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           Q+T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 147 QQTSVAELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIEAIVRSLDRAGEHDYSI 206

Query: 65  -DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            D++   V+    A+V+  S       GK+     V+      + +L         +  L
Sbjct: 207 YDMRHAWVA--EIAEVLDRSVTPAA--GKSAATVQVLADSRSNRLVLLGPPQARARLLRL 262

Query: 124 EMTL---RRFIADSNIRVEMVSDTVVL--------------HGMVRTIQDSQRAVELSET 166
             +L       A+S +      D   L               G        +  +  ++ 
Sbjct: 263 AQSLDVPSSRSANSRVIRLRHGDAKTLAATLGEIGESLRGERGQDGRGSGKRGLLVRADE 322

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            L+              + ++  L++    Q+ ++  I E+  +I   +G Q ++     
Sbjct: 323 SLNALVILADPEDVGLLEDIVRQLDVP-RAQLLVEAAIVELSGEIGDALGVQWALRSGHV 381

Query: 225 GPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                FA          G                  L    F  ++ AL R +    L+ 
Sbjct: 382 AGGAGFADSGLSIGTLLGALQAGKPPAELPDGAIVGLGSRDFGALVTALSRNSRSNLLST 441

Query: 275 PTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +     
Sbjct: 442 PSLLTLDNQKAEILVGQNVPFQTGSYTTSASGSSNPFTTVERKDIGVTLKVTPHIGEDRM 501

Query: 328 IGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L I+ E+S                   R   +TV    G  IVL GL++DD+ +    
Sbjct: 502 LRLEIEQEISSIAPTATLAAKAVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDLLRSDSR 561

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LFR+SR  R +  + +   P +V+  A                 +   
Sbjct: 562 VPLLGDIPGVGRLFRSSRETRVKRNLMVFLRPSIVRDAAG---------------LERIS 606

Query: 445 FNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             R   I   + A+    +      G I
Sbjct: 607 HGRYRSIQLLRGAAGEPVRPLFEDAGAI 634


>gi|241763436|ref|ZP_04761490.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
 gi|241367378|gb|EER61699.1| general secretion pathway protein D [Acidovorax delafieldii 2AN]
          Length = 697

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 58/235 (24%), Positives = 104/235 (44%), Gaps = 9/235 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++ +I EV      + G Q + + +  G   S     G    +  G FS      
Sbjct: 420 PTQVLIEASIIEVTLGDDLKYGLQWAFSDTHRGGPGS--GLIGALPSASTGGFSYTLKDT 477

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GAT 305
             +    L+AL   + I+ ++ P+L  +  Q+A+   G Q   +T  ++          T
Sbjct: 478 LGNMRVTLNALAAKSLIKVISSPSLMVLDNQTATIAVGTQQPIRTGETTNLNTVGNSTTT 537

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +    D GV L   P+V S   + + I   V++           ++  R+  + V + SG
Sbjct: 538 TYQYKDTGVQLSVQPSVNSGDLVTMDISQAVTDVGDEDTVTGQRAFLQRQISSKVAVRSG 597

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +VL GL+KD+    + G+PLLS +P++G LF  +  +   TE+ +  TP +V+
Sbjct: 598 EAVVLGGLIKDNSSSGRSGVPLLSSLPVVGGLFGATTSSSGRTELLVVITPKVVR 652


>gi|304311962|ref|YP_003811560.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
 gi|301797695|emb|CBL45917.1| Fimbrial type-IV assembly protein, outer membran secretin [gamma
           proteobacterium HdN1]
          Length = 710

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 51/272 (18%), Positives = 106/272 (38%), Gaps = 32/272 (11%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------- 219
           ++ L++    QV ++  I   R ++ +++G + ++                         
Sbjct: 441 LDQLDVPVR-QVLIEARIVIARANVGEEMGVRWNVVQRGKVGEDFHNVFLSGKGTGVESN 499

Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                         +           +    ++    D+   +  L ALE       ++ 
Sbjct: 500 VESLTNTGKFTIGTNTVPLDFSVQGGDASSLALGLFDDKGLLDIELSALESEGRADVVST 559

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +     Q A   SG +  Y+   SS+GAT+ +  +  + L  TP +   GRI + ++ 
Sbjct: 560 PKVLTADQQKAKVASGTEIPYQEA-SSSGATTTSFKEAVLSLEATPQITPDGRIIMDLKV 618

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                     A ++P       +T+V + +G T+VL G+ + +  +     P L  +P+L
Sbjct: 619 NQDSIGDIDTASNIPIIDTNSVETSVIVDNGQTVVLGGVFRSEEIKSVAKTPFLGDLPVL 678

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G LFR +  ++ +TE+ +  TP +V  V  + 
Sbjct: 679 GRLFRKNVSSQAKTELLVFITPKIVTDVVAKQ 710


>gi|91212377|ref|YP_542363.1| type II secretion protein GspD [Escherichia coli UTI89]
 gi|218560038|ref|YP_002392951.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|237706291|ref|ZP_04536772.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|91073951|gb|ABE08832.1| hypothetical type II secretion protein GspD [Escherichia coli
           UTI89]
 gi|218366807|emb|CAR04576.1| general secretion pathway protein D precursor [Escherichia coli
           S88]
 gi|226899331|gb|EEH85590.1| type II secretion protein GspD [Escherichia sp. 3_2_53FAA]
 gi|294493975|gb|ADE92731.1| general secretion pathway protein D [Escherichia coli IHE3034]
 gi|307625435|gb|ADN69739.1| general secretion pathway protein D precursor [Escherichia coli
           UM146]
 gi|323951515|gb|EGB47390.1| general secretion pathway protein D [Escherichia coli H252]
          Length = 686

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|146294651|ref|YP_001185075.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
 gi|145566341|gb|ABP77276.1| general secretion pathway protein D [Shewanella putrefaciens CN-32]
          Length = 703

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTQGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVS 454

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +         + ++S    +V   + GV L   
Sbjct: 455 SDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  + +P L  IP+LG LF++S   + +  + I   P +++
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613


>gi|324018098|gb|EGB87317.1| general secretion pathway protein D [Escherichia coli MS 117-3]
          Length = 686

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S             +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAGGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|186477814|ref|YP_001859284.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184194273|gb|ACC72238.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 787

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 101/269 (37%), Gaps = 34/269 (12%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V++ L+I    QV ++  I E+  +    +G Q  I   +     + A   G   ++   
Sbjct: 406 VIDQLDIRRP-QVYIEALIVELNSNTNANLGIQWQIGSGNVFAGTNLATGSGNSIINLTA 464

Query: 244 DFS---------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
             +                     V  +        +L AL +      L+ P L  +  
Sbjct: 465 AAATGGIASALATQNLQQGLNVGWVHNLFGVNGLGALLQALSQTADANVLSTPNLITLDN 524

Query: 283 QSASFTSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           Q A    G     +T S         +T   +    D G+ LH  P +   G + L++ T
Sbjct: 525 QEAKIVVGTNVPIQTGSYSNLTSSTATTAFNTFDRIDVGLTLHIKPQITDGGILKLQLYT 584

Query: 335 EVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           E S  V G          P +  R   +TV   +G  IVL GL++D+ Q     +PLL  
Sbjct: 585 EDSAIVAGTTNVTTNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVTNSKVPLLGD 644

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+    R +T + +   P ++
Sbjct: 645 IPWIGQLFRSENKTRAKTNLLVFLRPVII 673


>gi|191171834|ref|ZP_03033380.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215488288|ref|YP_002330719.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312968706|ref|ZP_07782915.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|190907869|gb|EDV67462.1| general secretion pathway protein GspD [Escherichia coli F11]
 gi|215266360|emb|CAS10797.1| putative type II secretion protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312286924|gb|EFR14835.1| general secretion pathway protein D [Escherichia coli 2362-75]
 gi|312947523|gb|ADR28350.1| general secretion pathway protein D precursor [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|320195111|gb|EFW69740.1| General secretion pathway protein D [Escherichia coli WV_060327]
          Length = 686

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|323494567|ref|ZP_08099671.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
 gi|323311170|gb|EGA64330.1| general secretion pathway protein D [Vibrio brasiliensis LMG 20546]
          Length = 674

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 66/453 (14%), Positives = 150/453 (33%), Gaps = 83/453 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDP---TKADVVVHSPRTMYLFGKNVGQAN------ 98
            I +   +  ++ ++   ++ V  +        ++   S   M    + + +        
Sbjct: 162 NIILITGRAAVVNRLADIIKRVDQAGDKEIEVVELANASAAEMVRIVEALNKTTEAKNTP 221

Query: 99  ------VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN------IRVEMVSDTVV 146
                 ++        +++ D  + + +  L   L   +A         +R     D V 
Sbjct: 222 AFLQPKLVADDRTNSILISGDPQVRQRLRKLIQQLDVEMASKGNNRVVYLRYAKAEDLVD 281

Query: 147 LHGMVRTIQDSQRA------------VELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191
           +   V     ++++            V ++   ET            ++ + V++ L+I 
Sbjct: 282 VLKGVSDNLQAEKSTGAKGSNTQRGEVMIAAHPETNALVVTAPPDIMNALQDVISQLDIR 341

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------- 218
              QV ++  I E+       +G Q                                   
Sbjct: 342 -RAQVLIEALIVEMAEGDGINLGVQWGSLETGAVIQYGNTGVPIGQVMVGLEEAKDTTTT 400

Query: 219 ------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                           +   D+     +  G       +    +  ++ A+   +    L
Sbjct: 401 ESYWNSTDNKWESRQTTEQGDYSTLASALSGAQGAALSVVMGDWTALISAVSTDSNSNIL 460

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           + P++T +    ASF  G +    T      ++     +V   + G+ L   P +     
Sbjct: 461 SSPSITVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNS 520

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L I+ EVS  +    A D+  +  R+ +T+V +  G  IVL GL+ +   + +  +PL
Sbjct: 521 VQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVEDGAMIVLGGLIDERALESESKVPL 579

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  IP LG LF+++    E+  + +   P +++
Sbjct: 580 LGDIPYLGHLFKSTSTQVEKKNLMVFIKPTIIR 612


>gi|318607800|emb|CBY29298.1| type IV pilus biogenesis protein PilQ [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 416

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 74/402 (18%), Positives = 140/402 (34%), Gaps = 47/402 (11%)

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL------IGHDGKQ 108
           NK + L+       V++     AD    +     +   ++G  N+ L             
Sbjct: 27  NKPVSLEFQDVPASVVLQ--ALADYQQLN----LVIASDIG-TNLSLRLVDVPWDQALAI 79

Query: 109 MLNLDILIERDIAHL------EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
           +L +  L       +      + +  R +      V      + L       ++   ++ 
Sbjct: 80  VLRMSHLKVEREGAVMLVFTEQDSEERRLRAEQKTVPESLSNLSLALQYANAEEVADSLN 139

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAE 204
           L+E        +   +    K  N L I                      QV L   I  
Sbjct: 140 LAE----GGLLSPLGSVVVDKRTNTLLIRDTPASLALLKNWLAEMDLPLQQVQLAAHIVT 195

Query: 205 VRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + R+ L+++G +  +  +    S    +F  +      +    F+V  +  R     +  
Sbjct: 196 MSRENLQELGVRWGMGDTKPTSSLRMSNFNVNLPLPNSAISAGFNVARIGGRLLELEL-S 254

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
           ALE+   I  +A P L     Q+AS   G    Y       GAT++   +  + +  TP 
Sbjct: 255 ALEQENQIDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFKEAVLGMEVTPK 314

Query: 322 VLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           +L  G+I L ++   + P + +     +      ++  T + +  G TIVL G+ +    
Sbjct: 315 ILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETIVLGGIFQQKSS 374

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                +P+L+ IP LG LF+     +   E+ I  TP L+  
Sbjct: 375 HGLNKVPILADIPWLGGLFKQDARQQSRRELVIFITPRLISA 416


>gi|170681179|ref|YP_001745227.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
 gi|170518897|gb|ACB17075.1| general secretion pathway protein GspD [Escherichia coli SMS-3-5]
          Length = 686

 Score =  170 bits (431), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|167646061|ref|YP_001683724.1| general secretion pathway protein D [Caulobacter sp. K31]
 gi|167348491|gb|ABZ71226.1| general secretion pathway protein D [Caulobacter sp. K31]
          Length = 681

 Score =  170 bits (430), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 71/248 (28%), Positives = 113/248 (45%), Gaps = 10/248 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  + EV  +   + G Q  I               G              +L+
Sbjct: 426 PLQVVIEAVVTEVSLNDALRYGSQWFIRSGDDRA----ILSRGKTADPASTFPGFTYLLN 481

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTT 309
           R S    L AL   T +  L+ P L  ++ Q+AS   G Q    T    +SS+  +S+  
Sbjct: 482 RSSIAATLDALSSVTHVEVLSAPNLMVLNNQTASLEVGDQVPVSTGSALNSSSVISSIEY 541

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTI 368
            D GV+L  TP V S G + L I  EVS+      +  D P+  VRK  T++ +  G T+
Sbjct: 542 RDTGVLLKITPRVNSGGLVLLDIAQEVSDVSPTLSSTIDSPTISVRKIATSIAVQDGQTV 601

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            L GL++D+ ++L+ G+P LS +P+LGAL  +   +RE TE+ +  TP +++     D+ 
Sbjct: 602 ALGGLIRDNNKRLRNGVPFLSAVPVLGALAGSRDNSRERTELLVLLTPRVLR--NSGDIQ 659

Query: 429 RPDDHYSV 436
              D    
Sbjct: 660 AVTDELRE 667


>gi|323960851|gb|EGB56471.1| general secretion pathway protein D [Escherichia coli H489]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|331684607|ref|ZP_08385199.1| general secretion pathway protein D [Escherichia coli H299]
 gi|331078222|gb|EGI49428.1| general secretion pathway protein D [Escherichia coli H299]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|331659244|ref|ZP_08360186.1| general secretion pathway protein D [Escherichia coli TA206]
 gi|331053826|gb|EGI25855.1| general secretion pathway protein D [Escherichia coli TA206]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|218691255|ref|YP_002399467.1| general secretion pathway protein D [Escherichia coli ED1a]
 gi|218428819|emb|CAR09618.1| general secretion pathway protein D precursor [Escherichia coli
           ED1a]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|332139655|ref|YP_004425393.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549677|gb|AEA96395.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 582

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  + ++ V   +  L          +  K  +N    + + QV L+  I EV  +   Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTIRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309

Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248
            G +     S    S +F    G                        G  +S        
Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGALASNFAANTAAGIDPAINAVNAIGNTISTDIGGVST 369

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
             + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T  S++      
Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSTT 429

Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
                    +T    G+ L  TP +   G + L +   V+E         +         
Sbjct: 430 STENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + + 
Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549

Query: 409 EIFIAATPFLVKP 421
           E+ I   P +V+P
Sbjct: 550 ELVILIRPSVVQP 562


>gi|107102654|ref|ZP_01366572.1| hypothetical protein PaerPA_01003719 [Pseudomonas aeruginosa PACS2]
          Length = 658

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
           + +     +D   L   +  I +  +         +  G                    +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ 
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399

Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G    +                     +   SF  ++ AL   T    L+ P+L  +  Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459

Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S       SS   T+V   D GV L  TP +     + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S   P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR+++    +  + +   P +V+  A 
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609


>gi|308051183|ref|YP_003914749.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
 gi|307633373|gb|ADN77675.1| pilus (MSHA type) biogenesis protein MshL [Ferrimonas balearica DSM
           9799]
          Length = 551

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/288 (22%), Positives = 108/288 (37%), Gaps = 22/288 (7%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D ++ + L +  L       +     +  +       E QV L+  I EV      Q G 
Sbjct: 242 DGRQVLTLPQAGLVSVKAYPHELREVESFLGQAQQNLERQVVLEARILEVVLSDGYQQGI 301

Query: 216 QHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
             S    S G    S   +       V++              F  V+  L+    + TL
Sbjct: 302 NWSEVTGSIGSTDISFGTSEGQFSNAVTDVIGGITGISFTGTDFSAVVTLLDTQGDVDTL 361

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTV 322
           + P +TAI+ Q A    G    + T  S          +T    +T    G+ L  TP +
Sbjct: 362 SSPRVTAINNQKAVIKVGTDEYFVTDISATTVASDTPITTPDVELTPFFSGIALDVTPQI 421

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGL 373
              G + L +   V++                       +R++DT +   SG  +V+ GL
Sbjct: 422 GQSGEVLLHVHPSVTDITEQTKTITALDTTLELPLAQSQIRESDTMIRAHSGDVVVIGGL 481

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +K   +Q++  +PLL +IP LG LF N      +TE+ I   P +V+P
Sbjct: 482 MKTLQEQVESKVPLLGQIPFLGELFTNRSQRNVKTELVILLRPTIVEP 529


>gi|238025716|ref|YP_002909947.1| general secretory pathway protein D [Burkholderia glumae BGR1]
 gi|237874910|gb|ACR27243.1| General secretory pathway protein D [Burkholderia glumae BGR1]
          Length = 765

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 122/377 (32%), Gaps = 77/377 (20%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+  +    +G Q  +
Sbjct: 362 IQADAATNSLIITASDPVYRNLRAVVDQLDER-RAQVYIEALIVELNSNTSANLGIQWQV 420

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS----------------------------VKGVL 251
             ++     S   +  G   +  G  +                            +K + 
Sbjct: 421 ANNALYAGSSLGTNVSGLGNTITGLTAAAAAGSAGGANGGAAAAASLTPGLNIGWLKNMF 480

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTG 303
                  +L A   ++    L+ P L  +  + A    G              + +SS  
Sbjct: 481 GITGLGALLQAFSGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSNLTSGNSSNA 540

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSYRVRKADTTV 360
             +    D G+ LH  P +   G + L+I TE S  V    +     +P++  R   +TV
Sbjct: 541 FNTFDRQDVGLTLHVKPQITEGGILKLQIYTEDSAVVPSTTSSTAVGVPTFSKRSIQSTV 600

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV- 419
              +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++ 
Sbjct: 601 LCDNGEIIVLGGLMQDNYQVGNNKVPLLGDIPWIGQLFRSEGKQRQKTNLMVFLRPVILT 660

Query: 420 ----------------------------------KPVAMRDLSRPDDHYSVEDDAKAFFF 445
                                              PV       PD+  +   +   F  
Sbjct: 661 DHATTQAITANRYDYIQGVQGAYRTDNNLIRDKDDPVTPPMPLGPDEGVAPAAN--LFDL 718

Query: 446 NRVNKIYGPKEASEVEG 462
            R+ +  G        G
Sbjct: 719 TRMTRRPGYPPVPASAG 735


>gi|84394142|ref|ZP_00992875.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
 gi|84375244|gb|EAP92158.1| MSHA biogenesis protein MshL [Vibrio splendidus 12B01]
          Length = 492

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 112/310 (36%), Gaps = 34/310 (10%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  +++  + +A  +    +  +    +     S+K +         Q
Sbjct: 166 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 218

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----V 250
           V L+  I EV      Q G   S    S G                    S+ G      
Sbjct: 219 VILEAKIMEVTLSDGYQQGISWSNLSKSIGSGGVVIDRPASTLPPLDAISSLLGGQTNVT 278

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------- 302
           +   SFE VL  ++    +  L+ P +TA + Q A    G    Y T  SS+        
Sbjct: 279 ISDGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTDLSSSVGSGDDAN 338

Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMPS- 350
                 +T    G+ L  TP +   G + L +   V                    +P  
Sbjct: 339 VAPEVELTPFFSGISLDVTPQIDDKGSVFLHVHPAVIEVEEEVKELNLGSTTGIVQLPLA 398

Query: 351 -YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFRN+    ++TE
Sbjct: 399 KSSIRESDSVIRAKDGDVVVIGGLMKSNTSDVTSKVPFLGDIPALGHLFRNTNQLTQKTE 458

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 459 LVILLKPTIV 468


>gi|319761508|ref|YP_004125445.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|330823377|ref|YP_004386680.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
 gi|317116069|gb|ADU98557.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
 gi|329308749|gb|AEB83164.1| general secretion pathway protein D [Alicycliphilus denitrificans
           K601]
          Length = 777

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 110/314 (35%), Gaps = 36/314 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +      T        +      + V++ L+     QV ++  I EV  
Sbjct: 388 SGTDNQPSTGGQIQADPTTNSLIISAPEPQYRQLRAVIDKLD-GKRAQVLIESLIVEVSA 446

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------GDFSVKGVLDRF 254
           + + + G Q      + G                                 +   + +  
Sbjct: 447 NKVAEFGIQWQTAFGNYGNGAVGVIGTNSGVAGGNIIDLAVAAATGNYASLTSSAIGNGM 506

Query: 255 S------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           +               + + LE       L+ P L  +  + A    G    + T S + 
Sbjct: 507 NVAIAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQIIIGNNVPFPTGSYAN 566

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYR 352
                      T+V   D G++L   PT+   G + L +  EVS+         + PS  
Sbjct: 567 TGGNGGAVNPFTTVERKDVGLMLRVRPTINENGTVKLTLYQEVSKVNESTLTNVNGPSTS 626

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R  ++TV +  G  IVL GLL+D     ++ +P++  +P+LGALFRN   +R++T + +
Sbjct: 627 KRSIESTVLVDDGSVIVLGGLLEDSYSLNQDKVPVMGDLPVLGALFRNENRSRKKTNLMV 686

Query: 413 AATPFLVKPVAMRD 426
              P +++  A  D
Sbjct: 687 FLRPMVIRDNATSD 700


>gi|218778338|ref|YP_002429656.1| type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
 gi|218759722|gb|ACL02188.1| Type IV pilus secretin PilQ [Desulfatibacillum alkenivorans AK-01]
          Length = 844

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 104/293 (35%), Gaps = 29/293 (9%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V++       V++    +           +   V  L  +    QV ++  + E +    
Sbjct: 551 VKSPDRGSVDVDIRTNTIIMIDIKDRIKRARDIVSRLDRVTA--QVQIEARVVEAQTTFS 608

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------------------DFS 246
           + IG   +                   +   GG                        +FS
Sbjct: 609 RSIGLAWNGESGIQPGDSREGVGPQRGYDVLGGTYGYNWSVNYPTETDDYGNNTFGFNFS 668

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               L   S    L+A E    I+ ++ P +  +  + A+    G           G T 
Sbjct: 669 RLLGLTPLSLNATLNAAESRGEIKIVSSPKIRTLDNKPATIK-QGIDYPIKQFDGDGNTV 727

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +      + L  TP V    R+ +++  E ++    ++     S+  ++ DT + +  G 
Sbjct: 728 IVYKAVDLQLEVTPHVTQDRRVSMKMTVEKNDVGAVISEEQ--SFNTKEVDTELLVNDGD 785

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+V+ G++K   +   +G P L  +P+LG LF++S  + E  E+ +  TP +V
Sbjct: 786 TVVIGGIIKTTFRDDVDGWPGLIDVPVLGWLFKDSTKSEEREELLVFITPTIV 838


>gi|218890695|ref|YP_002439559.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
 gi|254236075|ref|ZP_04929398.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|254241802|ref|ZP_04935124.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|126168006|gb|EAZ53517.1| general secretion pathway protein D [Pseudomonas aeruginosa C3719]
 gi|126195180|gb|EAZ59243.1| general secretion pathway protein D [Pseudomonas aeruginosa 2192]
 gi|218770918|emb|CAW26683.1| general secretion pathway protein D [Pseudomonas aeruginosa LESB58]
          Length = 658

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
           + +     +D   L   +  I +  +         +  G                    +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ 
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399

Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G    +                     +   SF  ++ AL   T    L+ P+L  +  Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459

Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S       SS   T+V   D GV L  TP +     + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S   P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR+++    +  + +   P +V+  A 
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609


>gi|113968501|ref|YP_732294.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|114045664|ref|YP_736214.1| general secretion pathway protein D [Shewanella sp. MR-7]
 gi|113883185|gb|ABI37237.1| general secretion pathway protein D [Shewanella sp. MR-4]
 gi|113887106|gb|ABI41157.1| general secretion pathway protein D [Shewanella sp. MR-7]
          Length = 700

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 -----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                            + G    +   +    F  ++ A+   
Sbjct: 395 WQAQGEDGTTVCTENGTCTENPDSRGDVTLLAQALGKVNGMAWGVAMGDFGALIQAVSAD 454

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPT 321
           T    LA P++T +  Q ASF  G +         + ++S    +V   + GV L   P 
Sbjct: 455 TNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ +++Q+ 
Sbjct: 515 INEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +P L  IP+LG LF++S   + +  + I   P +++
Sbjct: 573 VQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 611


>gi|153947341|ref|YP_001402915.1| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 31758]
 gi|152958836|gb|ABS46297.1| protein transporter HofQ [Yersinia pseudotuberculosis IP 31758]
          Length = 458

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 71  PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 126

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 127 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 182

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 183 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 238

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 239 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 297

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 298 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 357

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 358 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 417

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 418 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 458


>gi|323188610|gb|EFZ73895.1| general secretion pathway protein D [Escherichia coli RN587/1]
          Length = 686

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|198283019|ref|YP_002219340.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665348|ref|YP_002425223.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247540|gb|ACH83133.1| type IV pilus secretin PilQ [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517561|gb|ACK78147.1| fimbrial assembly protein PilQ, putative [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 784

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 44/291 (15%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------------- 224
               QV ++  I +V     + +G     T +S                           
Sbjct: 495 RPVPQVLIEARIVQVTTSAAQSLGVNWGGTYTSGGGGGIVNLSGTGATGVTSTQGGAYPM 554

Query: 225 -----------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                S A             F++            L AL+   
Sbjct: 555 SGTTTTTGTGFTTPALVNLVPSTAGTALASMNPASLGFALGTAAGNRILNLQLQALQADN 614

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + ++ P +     + A    G +  Y+  +SS GAT+V+     + L  TP +   G+
Sbjct: 615 RAKIISSPKVLTQDNEKAVIEQGQEIPYQQATSS-GATAVSFKKAVLSLDVTPHISPNGK 673

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +     +P              ++  T + + +G T+V+ G+  D   Q + G+PL
Sbjct: 674 ITLDVDARNDQPNYAQAMPSGIPINTQQVKTKLLVNNGQTVVIGGIYTDSTTQNETGVPL 733

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           L  IP+LG LF++   +  +TE+ +  TP +V   +   L       +   
Sbjct: 734 LRDIPLLGWLFKSHINSVAKTELLVFLTPKVVGGESPGGLGVASAGSNPGT 784


>gi|15598301|ref|NP_251795.1| general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|544439|sp|P35818|GSPD_PSEAE RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|9949215|gb|AAG06493.1|AE004734_11 general secretion pathway protein D [Pseudomonas aeruginosa PAO1]
 gi|431185|emb|CAA48582.1| XcpQ [Pseudomonas aeruginosa PAO1]
          Length = 658

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 157/450 (34%), Gaps = 48/450 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
           + +     +D   L   +  I +  +         +  G                    +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ 
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399

Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G    +                     +   SF  ++ AL   T    L+ P+L  +  Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459

Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S       SS   T+V   D GV L  TP +     + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S   P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP+L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPLL 579

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR+++    +  + +   P +V+  A 
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609


>gi|90022332|ref|YP_528159.1| peptidase M41, FtsH [Saccharophagus degradans 2-40]
 gi|89951932|gb|ABD81947.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 727

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 113/304 (37%), Gaps = 42/304 (13%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            +  +A+    T        +      +++++ ++I    QV ++  I     D  K++G
Sbjct: 419 SERGQAIVDERTNSIILTDTEEKIDDFRRLVDRIDIPVR-QVMIEARIVIANSDFRKELG 477

Query: 215 FQ---------------HSITGSSSGPSKSFAADFGGKFV-------------------- 239
            +                 +TG  +G + +  +     FV                    
Sbjct: 478 VRMAGDAVETSVSGDTKFEMTGRLTGLTAADGSGPEALFVDTDGDGVTDDERSLLDSSLV 537

Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                +  G F+   +   F     L ALE +     +++P +     Q AS  SG +  
Sbjct: 538 DLGVFNPAGAFTWNVISSNFLLGMELSALENSGYAEIVSQPKVITGDKQKASIESGTEIP 597

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y+  S+S G T  +  +  + L  TP +    R+ + +               +P   + 
Sbjct: 598 YQEESASGGTT-TSFKEAVLKLEVTPQITPDNRVIMDLVINQDSISSIDANSGIPVIDIT 656

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +T V +  G TIVL G+   +    +  +PLL  IP +G LFRN   + ++ EI I  
Sbjct: 657 QLETQVLVADGETIVLGGIYTTNTFTGETKVPLLGDIPFVGKLFRNDFKSEDKREILIFI 716

Query: 415 TPFL 418
           TP +
Sbjct: 717 TPRI 720


>gi|124385937|ref|YP_001027735.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|124293957|gb|ABN03226.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 616

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 189 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 247

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 248 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 304

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 305 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 364

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 365 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 424

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 425 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 484

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 485 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 541

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 542 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 601

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 602 SELVVYITPTVV 613


>gi|292900933|ref|YP_003540302.1| protein transport protein [Erwinia amylovora ATCC 49946]
 gi|291200781|emb|CBJ47915.1| protein transport protein [Erwinia amylovora ATCC 49946]
          Length = 406

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 76/421 (18%), Positives = 156/421 (37%), Gaps = 31/421 (7%)

Query: 14  IFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LV 71
           + L S   + A+ P     + A +      +   +++++ +   +   + + ++DV    
Sbjct: 1   MALISPLAA-AQPPLTLAFDNAPVAQVLQALADYQQLNLVVAPGVEGHLSLRLKDVPWRQ 59

Query: 72  SDPTKADVVVHS----PRTMYLFGK---NVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           +          S       + +F        Q    +   + ++ML L   I   +    
Sbjct: 60  ALQLVIKTGKLSMEQQGNVLMVFPASWQQEEQRKAAVQREEQEKMLPLFDRILTLVHADA 119

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            ++   +     R+     ++ L     ++        L++T               +  
Sbjct: 120 ASVNTSLQSERARLMSARGSITLDSRTNSLLLRDTEKALAQT---------------EHW 164

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---GGKFVSE 241
           +  L++   +Q+ L   I  +  + L+++G    ++G +        +            
Sbjct: 165 VRQLDVPL-EQIELAAQIVTMSEESLRELGVTWGMSGEAQVADALRTSQLRVDLASGRPA 223

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G        LD    E  L ALE       +A P L     Q+AS   G +  Y+  + +
Sbjct: 224 GVAGLTLAKLDGRLLELELSALESEHQADIIASPRLFTSHQQTASIKQGTEIPYEVSTGN 283

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           +G+T++   +  + +  TP V S GRI   L I   V    +     ++ +   ++ DT 
Sbjct: 284 SGSTTMEFKEAMLAMEVTPLVQSNGRILLKLHISQNVPGRNMRSGENEVLTIDKQEIDTQ 343

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L  G T+ L G+ +         +P L  IP+LG+LFR+    ++  E+ I  TP LV
Sbjct: 344 VMLKDGQTLALGGIFQQQSATGSTRVPWLGDIPLLGSLFRHDVRQQKRRELVIFITPRLV 403

Query: 420 K 420
           +
Sbjct: 404 R 404


>gi|313108415|ref|ZP_07794431.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
 gi|310880933|gb|EFQ39527.1| general secretion pathway protein D [Pseudomonas aeruginosa 39016]
          Length = 658

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
           + +     +D   L   +  I +  +         +  G                    +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ 
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399

Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G    +                     +   SF  ++ AL   T    L+ P+L  +  Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459

Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S       SS   T+V   D GV L  TP +     + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S   P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR+++    +  + +   P +V+  A 
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609


>gi|306816695|ref|ZP_07450827.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
 gi|305850260|gb|EFM50719.1| general secretion pathway protein D precursor [Escherichia coli
           NC101]
          Length = 686

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGSVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|307731211|ref|YP_003908435.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
 gi|307585746|gb|ADN59144.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1003]
          Length = 613

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/446 (17%), Positives = 148/446 (33%), Gaps = 47/446 (10%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           + +       P V   P  + + A  +          K IS+   +  +  V        
Sbjct: 177 VAAPASALEGPPVPLPPLTRLSGAPKVPADATLAADDKPISLNFQRAELGAVLNAFAQ-F 235

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRR 129
                 A   V    ++ L       A   L+   G  M  + +++    IA L    R+
Sbjct: 236 TGLNIVASERVRGSVSLRLDKVPWRVAFDTLLDVHGLAMERHGNVVWVAPIADLAARERQ 295

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTI-----QDSQRAVELSETFLSQSGRNQYANSSSKKV 184
                    E  +    L  +           ++    L     +Q   ++    ++   
Sbjct: 296 RF-------EAHARAADLEPLASRTFQLHYARAEDVRRLLTGSGNQRVLSKRGAVTADPR 348

Query: 185 MNLLNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            NLL +                      QV ++  I E      + +G + S+ G+S+  
Sbjct: 349 TNLLFVTDLEGRLAQIAALLDSVDRPTRQVLIEARIVEGEHGFSRNLGVRLSMAGTSADG 408

Query: 227 SKSFAAD------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
           S    +                 F +     ++            L ALE     + ++ 
Sbjct: 409 STRGLSGGKDGLVYDLSARPIAGFDAATAGLTLFAAGATRLLNIELSALEAEGRGQVVSS 468

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +       A    G +  Y+      G + V      + L   P ++  GR+ L +  
Sbjct: 469 PRVVTADRMKAVVEQGTELPYQ-AKVGQGVSGVQFRRATLKLEVEPQIMPDGRVVLDL-- 525

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           +V++  +G      P+   +   T VE+  GGT+ + G+   D +     +P+L KIP+L
Sbjct: 526 DVAKDSVGEQTDAGPAINTKHVQTRVEVEDGGTVSIGGIYATDGRDDVTRVPVLGKIPVL 585

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           GALFR+     + +E+ +  TP +V+
Sbjct: 586 GALFRHRAHRDQRSELAVFITPRVVQ 611


>gi|326318805|ref|YP_004236477.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|323375641|gb|ADX47910.1| general secretion pathway protein D [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 823

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 63/248 (25%), Positives = 107/248 (43%), Gaps = 20/248 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------GPSKSFAADFGGKFVSE 241
             QV ++ +I EV  D   Q G Q + + S                 S ++         
Sbjct: 530 PTQVLIEASIVEVTLDDSLQYGLQWAFSNSGPSNLNGAGQLLTNAPGSNSSIGASIPTPT 589

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
              FS        +   VL+AL     ++ ++ P+L  +   +A  + G Q   KT +  
Sbjct: 590 TSGFSYALSNSLGNVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGTLT 649

Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYR 352
                 ++ A ++   D GV L  TP+V +   + ++I   V++       N    P ++
Sbjct: 650 SAISGGTSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGNVSLQPVFQ 709

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  + V + SG  IVL GL++D     K GIPLL  IP++G+LF N+      TE+ +
Sbjct: 710 QRQITSKVAVRSGEAIVLGGLIRDTNNSSKSGIPLLQDIPVVGSLFSNNGKTGTRTELLV 769

Query: 413 AATPFLVK 420
             TP +V+
Sbjct: 770 VITPKVVR 777


>gi|116051101|ref|YP_790068.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586322|gb|ABJ12337.1| general secretion pathway protein D [Pseudomonas aeruginosa
           UCBPP-PA14]
          Length = 658

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 87/450 (19%), Positives = 156/450 (34%), Gaps = 48/450 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 220

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 221 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 280

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG-------------------RN 174
           + +     +D   L   +  I +  +         +  G                    +
Sbjct: 281 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALVLLAD 340

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +K+  A+ 
Sbjct: 341 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTKTNFANT 399

Query: 235 GGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           G    +                     +   SF  ++ AL   T    L+ P+L  +  Q
Sbjct: 400 GLSIGTLLQSLESNKAPESIPDGAIVGIGSSSFGALVTALSANTKSNLLSTPSLLTLDNQ 459

Query: 284 SASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S       SS   T+V   D GV L  TP +     + L I+ E+
Sbjct: 460 KAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVSLKVTPHINDGAALRLEIEQEI 519

Query: 337 SE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S   P              R   +T+   +G  IV+ GL++DD+ Q +  +PLL  IP L
Sbjct: 520 SALLPNAQQRNNTDLITSKRSIKSTILAENGQVIVIGGLIQDDVSQAESKVPLLGDIPFL 579

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LFR+++    +  + +   P +V+  A 
Sbjct: 580 GRLFRSTKDTHTKRNLMVFLRPTVVRDSAG 609


>gi|117620233|ref|YP_854918.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117561640|gb|ABK38588.1| msha biogenesis protein mshl [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 557

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 112/288 (38%), Gaps = 35/288 (12%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----TGSSSGPSKSFAADFGGKFVS 240
           +N      + QV L+  I EV  +   + G   S        + G +   +        +
Sbjct: 268 LNQSESHLKRQVVLEARILEVALNEGYEQGVDWSGLSASWDGNKGITGGGSLTPSTIANT 327

Query: 241 EGGDFSVKGVLDRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               FS  G    F     +F   ++ L+    + TL+ P +TA + Q A    G    +
Sbjct: 328 PNQIFSALGGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYF 387

Query: 296 KTVSSS------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            T +S+            T    +T    G+ L  TP +   G++ L I   V +     
Sbjct: 388 VTNASTTTTTSGTSAPIVTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQK 447

Query: 344 NAGDM----PSY------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
              D+    P         +R++DT V+  +G  IV+ GL+K D Q++   +PLL  IP 
Sbjct: 448 KTIDVGTADPLILPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPW 507

Query: 394 LGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPD---DHYSVE 437
           +G  F N R + ++ E+ I   P +V K     +L R     D +   
Sbjct: 508 VGEAFTNRRESTKKVELVILLKPTVVEKDTWQNELQRSSELLDKWYPP 555


>gi|226951776|ref|ZP_03822240.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
 gi|226837491|gb|EEH69874.1| general secretion pathway protein [Acinetobacter sp. ATCC 27244]
          Length = 735

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+     QV ++  I EV     +Q+G Q  +   +SG      ++ G      
Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432

Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282
              +   G             +   +F         ++ AL+  T    L+ P++  +  
Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492

Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           + A    G    + T S +          T+V   D G+ L   P +   G I L ++ E
Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS                R   T+V    G T++L GL+ DD    ++ IP+L  IP LG
Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFR    + ++  + +   P +V
Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636


>gi|326423839|ref|NP_760349.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
 gi|319999208|gb|AAO09876.2| pilus (MSHA type) biogenesis protein MshL [Vibrio vulnificus CMCP6]
          Length = 548

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 113/304 (37%), Gaps = 34/304 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++  G  +++  + +A  ++        R        ++ + +     + QV L+  I 
Sbjct: 227 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 280

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
           EV      Q G   S   +S G S S   +  G  V  G               +   SF
Sbjct: 281 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 340

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
           E VL  +     +  L+ P +TA + Q A    G    Y T  SS              +
Sbjct: 341 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 400

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP +   G + L +   V E        ++               +R+
Sbjct: 401 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 460

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K +  +    +P L  IP LG LFRN+    ++TE+ I   
Sbjct: 461 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFLGDIPALGHLFRNTSNLTQKTELVILLK 520

Query: 416 PFLV 419
           P +V
Sbjct: 521 PTVV 524


>gi|224373395|ref|YP_002607767.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
 gi|223589657|gb|ACM93393.1| type II and III secretion system protein [Nautilia profundicola
           AmH]
          Length = 449

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 60/286 (20%), Positives = 102/286 (35%), Gaps = 37/286 (12%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+V    D  +  E+                   + +N LN     +V + V I  V  
Sbjct: 164 SGLVTVTGDRNQIEEI------------------DRYINDLNNRLHKEVLIDVKIYSVTL 205

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
               + G   S        S S A        S     +       F+   +L+ L +  
Sbjct: 206 SSSHKTGIDWSQ------LSLSLADKSVPITASNIIGANAVFKEATFNVGGLLNFLAQNG 259

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------VTTHDYGVVLHFT 319
            + +++ P +  ++ Q A    G    YK  S  T   +        + +   GV+L  T
Sbjct: 260 NVNSISNPKIVTLNNQKALIKVGDTIYYKYASEITTDNNGNPTTEYTIDSKFVGVLLDIT 319

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLL 374
           P +   G I L I   +S         ++     P  +     + V+L    T+VL GL+
Sbjct: 320 PQISDNGEIILSINPRISAFKDATQLSNVNRDMPPDTQDNTMISVVKLKDNDTLVLGGLI 379

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            DD Q    G+P+L +IPI+  LF +      + E+    TP ++ 
Sbjct: 380 TDDKQLKVNGVPVLKEIPIIKYLFSSREEITTKKELVFVITPHIID 425


>gi|161523474|ref|YP_001578486.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
 gi|160340903|gb|ABX13989.1| type IV pilus secretin PilQ [Burkholderia multivorans ATCC 17616]
          Length = 573

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             +Q    L      Q   ++   +++    NLL +                      QV
Sbjct: 248 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 307

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
            ++  I E  +   + +G + ++                    +   AA     F +   
Sbjct: 308 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 367

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F++         +  L ALE     + ++ P +       A    G +  Y+      G
Sbjct: 368 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 426

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ 
Sbjct: 427 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 484

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V  
Sbjct: 485 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 542


>gi|294649022|ref|ZP_06726469.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825090|gb|EFF83846.1| general secretion pathway protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 735

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 57/264 (21%), Positives = 99/264 (37%), Gaps = 27/264 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  L+     QV ++  I EV     +Q+G Q  +   +SG      ++ G      
Sbjct: 374 ESAIQQLDTR-RQQVLIEAAIIEVVGGDAEQLGVQWVLGDLNSGVGLVNFSNLGSGLSKI 432

Query: 242 GGDFSVKG------------VLDRFSF-------ETVLHALERATAIRTLAEPTLTAISG 282
              +   G             +   +F         ++ AL+  T    L+ P++  +  
Sbjct: 433 AAGYLTGGAVGAAGAFGDGASIGLGNFENPRRAYGALIQALKANTKSNFLSTPSIVTMDN 492

Query: 283 QSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           + A    G    + T S +          T+V   D G+ L   P +   G I L ++ E
Sbjct: 493 EEAYIVVGQNVPFVTGSVATQGNSTVNPYTTVERKDVGITLKVVPHIGEGGSIRLEVEQE 552

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS                R   T+V    G T++L GL+ DD    ++ IP+L  IP LG
Sbjct: 553 VSNVQPNRGQATDLVTSKRAIKTSVLADHGQTVILGGLISDDTNLTRQSIPVLGDIPYLG 612

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFR    + ++  + +   P +V
Sbjct: 613 RLFRADTRSNDKRNLLVFIHPTIV 636


>gi|290968265|ref|ZP_06559808.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290781747|gb|EFD94332.1| bacterial type II and III secretion system protein [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 394

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 77/443 (17%), Positives = 156/443 (35%), Gaps = 58/443 (13%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            +T   +++I + + +  +         + A I      + K   +++ ++  +   + +
Sbjct: 1   MKTCVRVLAIGIAAISWYMPVSALQVRVSDAPIRTVLEGLAKSGNLNLIIDDSVQGNMTL 60

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
            +  V  +     + +  S    Y  G  +G          GKQ     +        + 
Sbjct: 61  HLDHVTPAQA--VEAIAASQNLFYDTGSPIGIITAGRNEEKGKQYYTWQLKNTTP-EAVI 117

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             ++  +  + ++    S+TVV+     T +++Q   +L +    ++             
Sbjct: 118 RAIQAVVPAAAVKSYADSNTVVVG---STKREAQLVNKLVQQLDKKTA------------ 162

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
                     QV + V I  + R  L + G +       SG    F              
Sbjct: 163 ----------QVDVAVRIVSLDRKALHKRGIEWDWQPFGSGSQTVF-------------- 198

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                     S+   + AL        LA P + A +G++A    G +        + G 
Sbjct: 199 ----------SWLGQIQALSEQGKAEILASPHIMASNGKAAQILIGDRVPVLKEHLANGE 248

Query: 305 --TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
              S++  + GV L++TP +   G +   I+ EVS PV  V          R+A T V +
Sbjct: 249 KTASISYEEAGVKLNYTPYIHQDGSVTASIEAEVSTPVW-VPEMKAYRISTRRAKTIVRM 307

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
               T+V+ GL+  +  +    +PLL  IP++G LF++     +ETE+ I       +PV
Sbjct: 308 KPDKTLVIGGLIGKEEMEHFRKVPLLGDIPLVGKLFQSRYKTAKETEVVIMLQA---RPV 364

Query: 423 AMRDLSRPDDHYSVEDDAKAFFF 445
              + +          + +    
Sbjct: 365 QDEEQNTVATELFPPIEDEKCLL 387


>gi|255320222|ref|ZP_05361407.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
 gi|255302661|gb|EET81893.1| fimbrial assembly protein PilQ [Acinetobacter radioresistens SK82]
          Length = 726

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 52/275 (18%), Positives = 104/275 (37%), Gaps = 33/275 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           ++++LL++A + QV ++  I     D  K++G +  I       + S             
Sbjct: 453 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 511

Query: 236 ---------------------GKFVSEGGDFSVKGV-LDRFSFETVLHALERATAIRTLA 273
                                G   S     +   + L  F  +  L AL+       ++
Sbjct: 512 RDPDDDGKYTIERPQNLNVDLGVTASGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 571

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            P +     Q A   SG Q  Y++         ++    D  + L+ TP++   G+I + 
Sbjct: 572 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 631

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +    S+           +    + +T V + +G T+VL G+ + + +  +  +P+L  +
Sbjct: 632 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 690

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P +G LFR    +  + E+ I  TP +V   A  +
Sbjct: 691 PGVGRLFRRDAKSNNKRELLIFVTPRIVNDSATGN 725


>gi|114568932|ref|YP_755612.1| general secretion pathway protein D [Maricaulis maris MCS10]
 gi|114339394|gb|ABI64674.1| general secretion pathway protein D [Maricaulis maris MCS10]
          Length = 650

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 82/473 (17%), Positives = 165/473 (34%), Gaps = 54/473 (11%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
               +     +   +   +  N  V+      I + +++   L++   +   V++ +V  
Sbjct: 138 ALAVVRPLIGAQGSVNATETGNVLVMVDYAENIARLRQVIRDLDRDTSVVEMVELTNVSA 197

Query: 72  SD-PTKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
            D       +  S       T++        A+  ++    +  ++  I + R +  +  
Sbjct: 198 GDMTRILQQMRTSSTAGEDETIFNVAIAPIPASNTVLLRGNRDAVDRMIALVRRVDSVSQ 257

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL------SETFLSQSGRNQYANS 179
           + R F        +      +L  +V T+   +           + T       +     
Sbjct: 258 SNRSFRVIYLSHADGEHLLPILQQVVDTLVAGEGTTRAPSVSHHAPTNALVINADPDVQR 317

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-------- 231
             + V+  L+I    QV ++  I E+     +++G Q  + G       +          
Sbjct: 318 QLELVIRQLDIRRP-QVLVEGIIVEMSDSTARELGVQMLLAGGEGDTPLAMTRFSSNNPD 376

Query: 232 ------------------------ADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERA 266
                                   A       + GG     G     + F  VL+A+E  
Sbjct: 377 LLALTGAATSPGDDDSDLNVSLRDAAINSLLGASGGTLGFGGQNGSGNLFGLVLNAVESD 436

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
                LA P++ A+  + A F SG +    T      +++    +V   + GV L   P 
Sbjct: 437 VNSNVLATPSIMALDNEEAYFLSGQEIPVTTGEALGSNNTNPFRTVDREEVGVKLTVLPQ 496

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +     + L I  EVS     VNAG        R+  TTV   +G  IVL GL++ + + 
Sbjct: 497 ITEGNTVRLHIVQEVSSVAGAVNAGSSDLITNKREISTTVLADNGEIIVLGGLIQQEDEI 556

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
            ++G+P L ++P +G LFR+       T + +   P +++  +  D+    D+
Sbjct: 557 SEDGVPGLRRLPGVGRLFRSEGSTTRRTNLMVFIRPTIIR--SEADMQALTDN 607


>gi|212633091|ref|YP_002309616.1| type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
 gi|212554575|gb|ACJ27029.1| Type II and III secretion system protein:NolW-like protein
           [Shewanella piezotolerans WP3]
          Length = 721

 Score =  169 bits (429), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 43/279 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVSEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                           + G    +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFGALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +          +  +S    +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V     + L I+ EVS            ++  R+  TTV   SG  +VL GL+ +++Q+ 
Sbjct: 515 VNEGNAVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +P L  IPI+G LF++S   +++  + +   P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKKNLMVFIKPTIIR 611


>gi|292493847|ref|YP_003529286.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
 gi|291582442|gb|ADE16899.1| type IV pilus secretin PilQ [Nitrosococcus halophilus Nc4]
          Length = 699

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 109/324 (33%), Gaps = 46/324 (14%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L   I      +      V L     T+     A  L+                 +K
Sbjct: 390 ASDLAALIQAEENTLLSPRGHVTLDERTNTLLVMDTADRLA---------------DLRK 434

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG- 242
           ++  L+I    QV ++  I     D  K +G +  ++               G       
Sbjct: 435 LVARLDIPVR-QVLIESRIVIANSDFSKDLGIRFGLSKREDTGGAFDEVVTSGSLNGTTQ 493

Query: 243 --------------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                                        ++  +      E  L AL+       ++ P 
Sbjct: 494 IINRETLELQDRMNVNLPVTRQDAARIALALTKLPLGNLLELELSALQAEGRGEVISNPR 553

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +   +   A    G +  ++  +SS GATSV+     + L   P +    RI + +   V
Sbjct: 554 VITSNQNEALIEQGTEIPFQQATSS-GATSVSFKKAVLSLKVVPQITPDDRIIMDLT--V 610

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           ++  +G     +PS   R+  T V + +G T+VL G+ + +  +    +P L  +P +G 
Sbjct: 611 NKDSVGQVFNGVPSIDTREVATQVLVDNGQTVVLGGIYEQEQNRASRRVPFLGDLPYVGT 670

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LFR+      + E+ I  TP ++K
Sbjct: 671 LFRDKSEVNNKDELLIFVTPKIIK 694


>gi|146309174|ref|YP_001189639.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145577375|gb|ABP86907.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 748

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/369 (18%), Positives = 126/369 (34%), Gaps = 32/369 (8%)

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            AD        + L G    +A + L+                 +  L     + +A+  
Sbjct: 222 IAD---PRSNRLLLLG--PREARLRLLKLAQSLDTPSSRSANTRVIRLRHADAKQLAE-- 274

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
             +    D +      ++    +  +   ++  +     +    S  + +     A   Q
Sbjct: 275 -TLGDFGDNLSQSQGNQSSTPLKLMIRADQSLNAIVIMAEADMVSLFEDLVRQLDAPRAQ 333

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---------- 245
           V ++  I E+  DI   +G Q +I G  +       ++ G    +  G            
Sbjct: 334 VLVEAAIVEMSGDINDALGVQWAIDGRHNALGGVNFSNTGLSIGTLLGAIARDETAELAK 393

Query: 246 ----SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    L   +F  ++ AL        L+ PTL  +  Q A    G    ++T S +
Sbjct: 394 TLPNGAIFGLGNDNFGMLITALSATGKSNLLSTPTLLTLDNQPAEILVGQNVPFQTGSYT 453

Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---Y 351
                     T++   D GV L  TP +     + L I+ E+S                 
Sbjct: 454 TDASGAGNPFTTIERKDIGVTLKVTPHINDGATLRLVIEQEISSIAPSTGLNAQAVDLVT 513

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   +TV    G  IVL GL++DD       +PLL  IP +G LFR++R  R++  + 
Sbjct: 514 NKRSIKSTVLADDGQVIVLGGLIQDDTSASASKVPLLGDIPGVGRLFRSTRDARQKRNLM 573

Query: 412 IAATPFLVK 420
           +   P + +
Sbjct: 574 VFLRPSVAR 582


>gi|115380040|ref|ZP_01467087.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820456|ref|YP_003952814.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|115362957|gb|EAU62145.1| general secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393528|gb|ADO70987.1| General secretion pathway protein D [Stigmatella aurantiaca
           DW4/3-1]
          Length = 850

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 72/447 (16%), Positives = 147/447 (32%), Gaps = 69/447 (15%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
                    ++S      G  +++      I+      + ++V+ P   D +    R + 
Sbjct: 277 PTPGGMPPPDMSQGSGDTGGPVTL----SQIIPDERTNKLIIVASPGAFDRIQEIVREVD 332

Query: 89  LFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
           +   + G+ NV  L   D +++ +    + +  A+      +       R        + 
Sbjct: 333 IPTDSGGRINVYPLENADSEELASTLQTLAQGTANRPRNPAQQQPPGVPRQNAAVAAELF 392

Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            G V+ +   +  ++ +  +                +V+  L+I    QV ++  I EV 
Sbjct: 393 SGEVKVSADKATNSLVIVASQADFKNIV--------RVIEKLDIP-RRQVFVEAVIMEVN 443

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVLDRFS--- 255
            D   + G              +     G           +S G   ++ G L       
Sbjct: 444 LDRNSEFGINLHSGYKLDTSDGAATGIVGTKYTKQGAPPSLSLGSLVNLGGFLAGLQGPV 503

Query: 256 -------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300
                        F  VLHAL++ + +  L+ P L     + A  T G    ++   S  
Sbjct: 504 IPELKNLGIDVPAFGVVLHALQQNSDVNVLSTPHLLTSDNEEAEITVGQNVPFQAGFSPG 563

Query: 301 ---------------------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
                                       +    +T  +  + L   P +     I + I 
Sbjct: 564 SLGGTIGGIGGVTGGTNTGLSSALLGLGSSFAPITRQNVELKLTVKPQINESDFIRMVIT 623

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +  E          P+   R A TTV      T+V+ G+++D   +    +P+L  IP+
Sbjct: 624 EQTEEIASSDPVLG-PTTSKRSAKTTVVAKDQETVVIGGIMQDRTIESVSKVPILGDIPL 682

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           LG LFR +   + +T + +  TP++++
Sbjct: 683 LGHLFRETTRRKTKTNLLLFLTPYIIR 709


>gi|88858661|ref|ZP_01133302.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
 gi|88818887|gb|EAR28701.1| MSHA biogenesis protein MshL [Pseudoalteromonas tunicata D2]
          Length = 563

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 62/278 (22%), Positives = 107/278 (38%), Gaps = 23/278 (8%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220
           +  L          ++ K+ + L   + + QV L+  I EV      Q G          
Sbjct: 264 QASLVTVHALPSEIAAMKEFLRLSEESLQRQVILEAKIIEVTLKDDYQQGVNWKEVLGHI 323

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           GS+     + A+   G  ++ G       V     F  V+  L     ++ L+ P +TA 
Sbjct: 324 GSTDLTFATTASGQIGNTITAGIGGVSSLVFKNADFSGVVSLLSTQGDVQMLSNPRVTAT 383

Query: 281 SGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           + Q A    G    + T  SST             S+T    G+ L  TP +   G + L
Sbjct: 384 NNQKAVIKVGQDEYFVTEVSSTTVTGNATTTTPEISLTPFFSGIALDVTPQIDKYGSVIL 443

Query: 331 RIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            +   V+E         +             +R++DT +   SG  +V+ GL++      
Sbjct: 444 HVHPSVTETAEQRKVITLNNEEFVLPLAQSNIRESDTVIRAGSGEIVVIGGLMQTVTTDE 503

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   PLL  +P+LG LF++ R  +++ E+ I   P +V
Sbjct: 504 ESKTPLLGDMPVLGHLFKSVRKRQDKKELIILIKPTVV 541


>gi|187930465|ref|YP_001900952.1| general secretion pathway protein D [Ralstonia pickettii 12J]
 gi|187727355|gb|ACD28520.1| general secretion pathway protein D [Ralstonia pickettii 12J]
          Length = 807

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 69/322 (21%), Positives = 113/322 (35%), Gaps = 44/322 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI----------TGSSSGPSKSFAADFGGKFVS 240
           A   QV ++  I EV      Q+G Q              G++ G   +   +  G   +
Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMAGAGGPTTFFGGGTNFGSGANNLINLAGTIAT 489

Query: 241 EGGDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                       +            +L AL    ++  L+ P L
Sbjct: 490 ITSGGIGSTAAQTAIGTLSNSVGQLNGGNFGVFNRGSGLGAILSALGSDGSVNVLSTPNL 549

Query: 278 TAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +  + A    G      T S +        T   +    D G+ L   P +   G + 
Sbjct: 550 ITLDNEEAKILIGQNVPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVKPQITDGGLVK 609

Query: 330 LRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           ++I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q  ++ +P L
Sbjct: 610 MQIFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGL 669

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNR 447
             IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D +  F    
Sbjct: 670 GDIPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGTLSDNRYNYMRDTQQGFVSPN 728

Query: 448 VNKIYGPKEASEVEGQNYKGAI 469
           +      K+   +   N     
Sbjct: 729 MLPTTSDKDTPVLPAPNAMRPA 750


>gi|325294579|ref|YP_004281093.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065027|gb|ADY73034.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 642

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 121/336 (36%), Gaps = 34/336 (10%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
                ++  L+       + +   +   +   +   ++   +   ++    + S      
Sbjct: 306 PKTKIIKQELQEPTKTYIVNLNYANAEEIEKEIKELVKKLDKRERITVNKSTNSLLLTVT 365

Query: 178 NSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------GP 226
               +++MNLL    +   QV +K  I ++     K  GF   I G +            
Sbjct: 366 KKHYQEIMNLLKKLDKPMKQVIVKAKIVQISTSAAKDFGFGWLIGGYNHMGTPPSSYITG 425

Query: 227 SKSFAADFGGKFVS-----------------EGGDFSVKGVLDRFSFETVLHALERATAI 269
           S  F        +                        +         E  L AL+     
Sbjct: 426 SYGFGLGSNTGVLPFINETSYSSLYNIPVGESTLALGILNKSQNLKVEIALKALQLDGNA 485

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPG 326
           + ++ P +  ++ Q A+   G +  Y+  + ++G     +V+     ++L   P + +  
Sbjct: 486 KIVSSPEVLTLNNQEATIEQGIEIPYRESTVASGGATTYTVSFKRASLILKVKPHITNNN 545

Query: 327 RIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            I L ++     P    + +   + P+   R   + +++ +G TIV+ G+ + +  + K 
Sbjct: 546 EIILDLEVRKDSPNYEHVALTGSNEPAIDTRNVKSRIKVANGNTIVIGGIYEKEKSKSKT 605

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+P++S IP+LG LF+       E  + I  TP +V
Sbjct: 606 GVPVISNIPLLGWLFKQESVKFTEKNLLIFITPKVV 641


>gi|308048042|ref|YP_003911608.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
 gi|307630232|gb|ADN74534.1| type IV pilus secretin PilQ [Ferrimonas balearica DSM 9799]
          Length = 681

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 64/259 (24%), Positives = 105/259 (40%), Gaps = 24/259 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------------------TGS 222
           +++++L++  + QV ++  +  VR +I +++G +  I                     G 
Sbjct: 421 RLVDILDVPVK-QVVIESRMVTVRDNINEELGIRWGISDQQGDKGTAGTLPGAEDIANGI 479

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               S     +      +    F V  + D    +  L ALER      +A P LT  + 
Sbjct: 480 VPSLSDRLNVNLPVVEPAGSIAFHVAKLGDGTLLDLELSALERENKGEIIASPRLTTANQ 539

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            +A    G +  +   +SS GATSV      + L  TP +    RI L +          
Sbjct: 540 YTAFIEQGTEIPFVQSTSS-GATSVEFKKAVLGLTVTPQITPDNRIVLDLTVTQDTRGET 598

Query: 343 VNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           V     P+     ++  T V   +G TIVL G+ +         +PLL  IP +G LFRN
Sbjct: 599 VQTATGPAVAIDTQRISTQVLAQNGETIVLGGIFQQQQLNTVTKVPLLGDIPFVGVLFRN 658

Query: 401 SRFNREETEIFIAATPFLV 419
           S+   E+ E+ I  TP +V
Sbjct: 659 SQDFTEKKELLIFVTPKIV 677


>gi|91791490|ref|YP_561141.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91713492|gb|ABE53418.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 705

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/306 (19%), Positives = 110/306 (35%), Gaps = 48/306 (15%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +   +T             + + V+N L+I    QV ++  I EV  +     G Q + 
Sbjct: 315 IMAHVDTNALVISAEPDQMRTIESVINQLDIR-RAQVLVEAIIVEVAENDDVGFGIQWAS 373

Query: 220 TGSSSGPSKSFAADFGGKFV---------------------------------------S 240
                    +  A  G                                           +
Sbjct: 374 MAGGGTQFNNLGATIGEVGAGVWAAREKDVAQVTTIDANNKPVVSNNPKTEGDYTLLAQA 433

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G    +   +    F  ++ A+   T    LA P++T +  Q ASF  G +    T S 
Sbjct: 434 LGKVNGMAWGVASGDFGALIQAVSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSQ 493

Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           +          +V   + GV L  TP +     + L I+ EVS            ++  R
Sbjct: 494 NSSNGNANPFQTVERKEVGVKLKVTPQINEGTAVKLTIEQEVSGINGKTGVD--VTFATR 551

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  TTV   SG  +VL GL+ +++Q+  + +P L  IP +G LF++S  ++++  + +  
Sbjct: 552 RLTTTVMADSGQIVVLGGLINEEVQESIQKVPFLGDIPFIGHLFKSSSSSKKKKNLMVFI 611

Query: 415 TPFLVK 420
            P +++
Sbjct: 612 KPTIIR 617


>gi|78064965|ref|YP_367734.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965710|gb|ABB07090.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 543

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 108/297 (36%), Gaps = 34/297 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +Q    L      Q   ++   +++    NLL +                      QV 
Sbjct: 219 RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRLDQVASLIEAIDRPSRQVR 278

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244
           ++  I E  +   + +G + ++      PS                AA   G F +    
Sbjct: 279 IEARIVEGEQGFSRNLGARVALRAQGRPPSGESATFTTGARNALDLAARPLGGFEAATAG 338

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 339 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 397

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +
Sbjct: 398 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 455

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           GGT+ + G+ +   +     +PLL KIP LGALFR+     +  E+ +  TP +V  
Sbjct: 456 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 512


>gi|313497412|gb|ADR58778.1| General secretion pathway protein D [Pseudomonas putida BIRD-1]
          Length = 584

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 103/266 (38%), Gaps = 26/266 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 272 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 330

Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 331 ASIAGAAASGDNEALGDLLSTTTGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 390

Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 391 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINVDNSVRLDIVQ 450

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS      +A D+     R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 451 EVSSIADTSSASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 509

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR+      +  + +   P +++
Sbjct: 510 GRLFRSDATRNTKQNLMVFIRPRILR 535


>gi|309785192|ref|ZP_07679823.1| general secretion pathway protein D [Shigella dysenteriae 1617]
 gi|308926312|gb|EFP71788.1| general secretion pathway protein D [Shigella dysenteriae 1617]
          Length = 681

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|222034685|emb|CAP77427.1| hypothetical type II secretion proteinGspD [Escherichia coli LF82]
          Length = 679

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 368 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 427

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|145597400|ref|YP_001161475.1| putative outer membrane porin HofQ [Yersinia pestis Pestoides F]
 gi|165928024|ref|ZP_02223856.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|166010419|ref|ZP_02231317.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|108781223|gb|ABG15281.1| putative membrane transport protein [Yersinia pestis Antiqua]
 gi|145209096|gb|ABP38503.1| membrane transport protein [Yersinia pestis Pestoides F]
 gi|165919973|gb|EDR37274.1| protein transporter HofQ [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165990509|gb|EDR42810.1| protein transporter HofQ [Yersinia pestis biovar Antiqua str.
           E1979001]
          Length = 450

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 63  PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 409

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 410 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 450


>gi|323527558|ref|YP_004229711.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
 gi|323384560|gb|ADX56651.1| type IV pilus secretin PilQ [Burkholderia sp. CCGE1001]
          Length = 576

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             ++    L     +Q   ++    ++    NLL +                      QV
Sbjct: 282 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLTQIAALLASVDRPTRQV 341

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244
            ++  I E      + +G + S+ G+++  +    +                 F +    
Sbjct: 342 LIEARIVEGEHGFSRNLGVRLSMAGTAADGTTRGLSGGKDGLVYDLSARPIAGFDAATAG 401

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++            L ALE       ++ P +       A    G +  Y+      G 
Sbjct: 402 LTLFAAGATRLLNVELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 460

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T VE+  
Sbjct: 461 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 518

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GGT+ + G+   D +     +P+L KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 519 GGTVSIGGIYATDGRDDVTRVPVLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 574


>gi|170739479|ref|YP_001768134.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168193753|gb|ACA15700.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 797

 Score =  169 bits (429), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 70/300 (23%), Positives = 122/300 (40%), Gaps = 21/300 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
            G V      +  + +     + S       +  +K++ +L    A   QV L+  IAEV
Sbjct: 457 SGAVYGSGARRGGIGIVADETNNSLVISATRTQYEKILRILGRLDARPTQVLLETVIAEV 516

Query: 206 RRDILKQIGFQHSITGSS---------SGPSKSFAADFGGKFVSEG--GDFSVKGVLDRF 254
             +   + G Q  +             +  S +      G  VS    G      +L+  
Sbjct: 517 TLNDKLEFGVQWFLKNGGSRFNLAQSDTAASVASGTSGAGALVSAAMRGVPGFNYLLNDA 576

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSV 307
            F  VL+AL   T +  L+ P +T +  ++A    G Q      S  +           +
Sbjct: 577 DFHVVLNALRGVTRVNVLSSPNITVLDNRTARLQIGDQVPIVKQSGQSALAGNAPILNQI 636

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGG 366
              D GV+L  TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G 
Sbjct: 637 ELKDTGVILSVTPRVNKNGLVVLDINQEVSDVVPTTTSNINSPTIRQRRVATSVAVSDGH 696

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++ + G++++  Q   E +P+L  +P++G  FRN    R  TE+ +   P +++  A  D
Sbjct: 697 SLAIGGMVQEKAQIGTEALPVLGDLPVIGPAFRNKSDLRVRTELIVFLRPKVIRGTADAD 756


>gi|149190625|ref|ZP_01868893.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
 gi|148835508|gb|EDL52477.1| type II secretory pathway, component EpsD [Vibrio shilonii AK1]
          Length = 674

 Score =  169 bits (429), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 101/281 (35%), Gaps = 45/281 (16%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----- 237
           +++  L+I    QV ++  I E+       +G Q     + S    S      G      
Sbjct: 334 EIIKQLDIR-RAQVLIEALIVELADVDGANLGVQWGNASAGSVVQFSNTGASIGNVMVGM 392

Query: 238 ---------------------------------FVSEGGDFSVKGVLDRFSFETVLHALE 264
                                              +  G       +    +  ++ A+ 
Sbjct: 393 EEAKDKTTTETRYRADGTPYNVETKTSGDYTKLASALSGVQGAAVGIALGDWTALITAVS 452

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFT 319
             +    L+ P++T +    ASF  G +    T      ++S    +V   + G+ L   
Sbjct: 453 STSNSNILSSPSITVMDNGEASFIVGEEVPVLTGSTAGSNNSNPFQTVDRKEVGIKLKVV 512

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   
Sbjct: 513 PQINEGNSVQLNIEQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLIDERAA 571

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +  +P L  IP LG LF ++    E+  + +   P +++
Sbjct: 572 ESESKVPFLGDIPYLGRLFTSTSTTVEKKNLMVFIKPTIIR 612


>gi|315288713|gb|EFU48111.1| general secretion pathway protein D [Escherichia coli MS 110-3]
          Length = 681

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|134283134|ref|ZP_01769835.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
 gi|134245329|gb|EBA45422.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 305]
          Length = 575

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRVLSKRGSVLADPRTNLLFVTDLSGRL 323

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 561 SELVVYITPTVV 572


>gi|51556732|gb|AAU06138.1| MshL [Pseudoalteromonas tunicata]
          Length = 563

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/249 (23%), Positives = 97/249 (38%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
            QV L+  I EV      Q G          GS+     + A+   G  ++ G       
Sbjct: 293 RQVILEAKIIEVTLKDDYQQGVNWKEVLGHIGSTDLTFATTASGQIGNTITAGIGGVSSL 352

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------- 302
           V     F  V+  L     ++ L+ P +TA + Q A    G    + T  SST       
Sbjct: 353 VFKNADFSGVVSLLSTQGDVQMLSNPRVTATNNQKAVIKVGQDEYFVTEVSSTTVTGNAT 412

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PS 350
                 S+T    G+ L  TP +   G + L +   V+E         +           
Sbjct: 413 TTTPEISLTPFFSGIALDVTPQIDKYGSVILHVHPSVTETAEQRKVITLNNEEFVLPLAQ 472

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +V+ GL++      +   PLL  +P+LG LF++ R  +++ E+
Sbjct: 473 SNIRESDTVIRAGSGEIVVIGGLMQTVTTDEESKTPLLGDMPVLGHLFKSVRKRQDKKEL 532

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 533 IILIKPTVV 541


>gi|300993062|ref|ZP_07180170.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|301048227|ref|ZP_07195262.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300299921|gb|EFJ56306.1| general secretion pathway protein D [Escherichia coli MS 185-1]
 gi|300305186|gb|EFJ59706.1| general secretion pathway protein D [Escherichia coli MS 200-1]
 gi|324005480|gb|EGB74699.1| general secretion pathway protein D [Escherichia coli MS 57-2]
 gi|324011870|gb|EGB81089.1| general secretion pathway protein D [Escherichia coli MS 60-1]
          Length = 681

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|28199566|ref|NP_779880.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182682302|ref|YP_001830462.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
 gi|28057681|gb|AAO29529.1| fimbrial assembly protein [Xylella fastidiosa Temecula1]
 gi|182632412|gb|ACB93188.1| type IV pilus secretin PilQ [Xylella fastidiosa M23]
          Length = 636

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232
              DQV ++  I        + +G +  +                   GSS+  ++    
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 429

Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +      
Sbjct: 430 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 489

Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
           G +  Y T    V+      +V   +  + L  TPT+ +  R+ L +     E+ + +  
Sbjct: 490 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 549

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+   
Sbjct: 550 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 609

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
            ++++ E+ I  TP +++      
Sbjct: 610 KDKQKAELLIFVTPKVLRVANATA 633


>gi|325275690|ref|ZP_08141579.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
 gi|324099176|gb|EGB97133.1| general secretion pathway protein D [Pseudomonas sp. TJI-51]
          Length = 613

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 89/502 (17%), Positives = 163/502 (32%), Gaps = 63/502 (12%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
            L  +    ++  L     S   + P   ANA V+  S   + + + + + L+       
Sbjct: 128 TLSGSVAADLAGLLRPLVSSSGYIGPSSSANALVVTDSAANLERLESLVLQLDSGQRHDY 187

Query: 63  PVDVQDVLVSDPT---------------------KADVVVHSPRTMYLFG-------KNV 94
            +    V + +                        AD    +   + + G          
Sbjct: 188 EL----VTLHNAQTEAVFAVVEAAAGGPDSGAQVVADA---NGSRLLILGPAKSRQRLAQ 240

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
              ++ +      Q   +  L   +   L   L       +           L G     
Sbjct: 241 LTRSLDVAAPATAQNWRVVRLQHSNAEQLADVLGEVGKRLDGAPGTRDLGANLTGDAVVK 300

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D+ +   +                S ++++  L+     QV +   I EV   I + +G
Sbjct: 301 ADADQNALV-------LLGEPQTLGSVEQIIQQLD-QPRAQVLIHAAIVEVSGSIDEALG 352

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEG----GDFSVKGVLDRFSFETVLHALERATAIR 270
            Q  +         +F+    G     G            +    F  ++ AL  ++   
Sbjct: 353 VQWGVGTGGLNGGVTFSESGTGLADLLGKEAKLPGGAALAIGTDRFAALISALASSSRSN 412

Query: 271 TLAEPTLTAISGQSASFTSGGQ-------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            L+ P+L  +  Q A    G         ++     S    T+V   D G+ L   P + 
Sbjct: 413 LLSTPSLLTLDNQEAHILVGQNVAFKTGSYVTPGSGSENPFTTVERKDIGISLKVRPHIN 472

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               + L ++ E SE        D+     R   +T+    G  IV+ GL+KD ++Q++ 
Sbjct: 473 EGQSLRLEVEQESSEIAPSTAENDL-ITNKRTLKSTILASDGEIIVIGGLIKDSMRQVER 531

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR--------DLSRPDDHYS 435
           G+PLLS+IP LG LFR     +E+T + +   P +++  A R        D  R  D   
Sbjct: 532 GVPLLSRIPWLGGLFRWRSDIQEKTNLMVFLRPTILRSQAERVEVGRRAYDGVRAADDSP 591

Query: 436 VEDDAKAFFFNRVNKIYGPKEA 457
           +  DA+  F  R        + 
Sbjct: 592 LPADAQRLFEPRRLPSAQVPQP 613


>gi|256024452|ref|ZP_05438317.1| general secretion pathway protein D precursor [Escherichia sp.
           4_1_40B]
          Length = 686

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|218701737|ref|YP_002409366.1| general secretion pathway protein D [Escherichia coli IAI39]
 gi|227887667|ref|ZP_04005472.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|301019909|ref|ZP_07184044.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|218371723|emb|CAR19573.1| general secretion pathway protein D precursor [Escherichia coli
           IAI39]
 gi|227835063|gb|EEJ45529.1| type II secretion protein GspD [Escherichia coli 83972]
 gi|299882007|gb|EFI90218.1| general secretion pathway protein D [Escherichia coli MS 196-1]
 gi|307555055|gb|ADN47830.1| general secretion pathway protein GspD [Escherichia coli ABU 83972]
          Length = 686

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|157959974|ref|YP_001500008.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
 gi|157844974|gb|ABV85473.1| general secretion pathway protein D [Shewanella pealeana ATCC
           700345]
          Length = 710

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/279 (21%), Positives = 105/279 (37%), Gaps = 43/279 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVGEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGV 394

Query: 236 ----------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                                           + G    +   +    F  ++ A+   T
Sbjct: 395 WQAQGEEGSTVCNDGTCTENPDTRGDITLLAQALGKVNGMAWGVAMGDFAALIQAVSSDT 454

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPT 321
               LA P++T +  Q ASF  G +          +  +S    +V   + GV L   P 
Sbjct: 455 KSNVLATPSITTLDNQEASFIVGDEVPILTGSQNSSNGNSNPFQTVERKEVGVKLKVVPQ 514

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     + L I+ EVS            ++  R+  TTV   SG  +VL GL+K+++Q+ 
Sbjct: 515 INEGSSVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLIKEEVQES 572

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + +P L  IPI+G LF++S   +++T + +   P +++
Sbjct: 573 VQKVPFLGDIPIIGHLFKSSSSGKKKTNLMVFIKPTIIR 611


>gi|254429436|ref|ZP_05043143.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
 gi|196195605|gb|EDX90564.1| Bacterial type II and III secretion system protein [Alcanivorax sp.
           DG881]
          Length = 384

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 96/411 (23%), Positives = 152/411 (36%), Gaps = 78/411 (18%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
                      + +      +L  P  V  V  SDP  A + V             G A 
Sbjct: 18  TVSNAQDLTDSMRLAPGDQKVLTFPAAVSKVATSDPGVAALTV------------TGSAE 65

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           ++L                                          + VL   +R      
Sbjct: 66  LLLTAK------------------------------------AEGSAVLSVWLRNSSKPL 89

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R+  +  T L  +                       QV   + + EV R  L Q+G  +S
Sbjct: 90  RSTVVVATTLGDALPFGT------------------QVQTDIRVLEVSRSELNQLGMSYS 131

Query: 219 ITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
            + +    +   AA        G   +  G           +    ++ALE      TLA
Sbjct: 132 NSFNGGQSAVGIAAPGSGFQVPGAVPTPLGTEGFNLFGFGANSVLAINALEAGGFAYTLA 191

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           EP+LT++SGQSASF SGG+       S+T    +   ++G+ L  TPTV+   +I L++ 
Sbjct: 192 EPSLTSLSGQSASFLSGGEFPVP-TRSTTDGVQIEFKEFGIGLSLTPTVIDKSQIILKVA 250

Query: 334 TEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            EVSE      +      +P  RVR+A+TTV L  G T +++GL+  +     + +P + 
Sbjct: 251 PEVSELDFSAGVETGGVAVPGLRVRRAETTVSLAPGETFIISGLVSRNTINSSDRLPGIG 310

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYSVED 438
            IP+LGA FR+SR  +++ E+ +  TP LV P       ++ P   Y    
Sbjct: 311 NIPLLGAFFRSSRIQKDDKELVMVVTPHLVTPQEATSPPVTLPGAGYHSSS 361


>gi|170022485|ref|YP_001718990.1| putative outer membrane porin HofQ [Yersinia pseudotuberculosis
           YPIII]
 gi|169749019|gb|ACA66537.1| type IV pilus secretin PilQ [Yersinia pseudotuberculosis YPIII]
          Length = 460

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 73  PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 128

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 129 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 184

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 185 -LQGGLLSPMGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 240

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 241 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 299

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 300 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 359

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 360 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 419

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 420 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 460


>gi|251773365|gb|EES53914.1| putative type II secretion system protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 604

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 71/371 (19%), Positives = 121/371 (32%), Gaps = 55/371 (14%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             LE+TLR+ I  + +  +  S TV + G VR +  +QR +++    L            
Sbjct: 264 DKLEITLRKTIPHAVVSADPKSQTVSVRGTVRDVYLAQRYLDIVRDQL------------ 311

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFV 239
                         +V  ++T+AE+        G   S         + S  +       
Sbjct: 312 ------------RREVFFRITVAEIDLSDANAYGINWSAMAKGVFNSTLSLTSGGTSNAG 359

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                         F    V+ AL+    +  L +P +  +SGQ  S  +     Y    
Sbjct: 360 LSATGGVATPYGATFGQTAVIQALDTIGRVHVLNQPYVGTVSGQPVSLNATTNIPYLQGE 419

Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--- 346
                      +     +     GV L  TPT L   +I L     V+     V      
Sbjct: 420 YPFFAGGLSSATETLPQIAYAAVGVNLEVTPT-LEGDQIHLHGTVVVNTLQQMVTINIKN 478

Query: 347 ----DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P    R   T +    G TIV+ GL+ +   +    IP L  IP L  LF    
Sbjct: 479 IGEFQNPQINTRSETTEITAHDGQTIVIGGLMANTKNKQFWTIPFLGSIPGLKWLFSGYN 538

Query: 403 FNREETEIFIAATPFL-----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           + ++ TE+ I  TP +     +   +  ++  PD  +  +           ++ +    A
Sbjct: 539 YQKQVTELAILITPEIKKTPRLDAASTEEMMDPDGRFYRKSLPG-------SRPFPVPPA 591

Query: 458 SEVEGQNYKGA 468
             + G    G+
Sbjct: 592 PAIPGYGTGGS 602


>gi|146307949|ref|YP_001188414.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
 gi|145576150|gb|ABP85682.1| general secretion pathway protein D [Pseudomonas mendocina ymp]
          Length = 645

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 80/451 (17%), Positives = 150/451 (33%), Gaps = 49/451 (10%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  +NA +I+     I + + +   L++       V    V +      
Sbjct: 154 PLVPQYGHLAAVTSSNALIISDRSANIARIQDLMRQLDQSGAQDFSV----VTLQHAWVM 209

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL--------- 127
           D   V +        K      V+      + +L         +A L  +L         
Sbjct: 210 DAAEVLNTSIARGQAKGTSATQVVADARTNRLILLGPPEARAKLADLARSLDSPSSRSAN 269

Query: 128 ----RRFIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
               R    D+    E + D    +       T       +  ++  L+        +  
Sbjct: 270 TRVIRLRHNDAKSLAETLGDISEGLKNKEGSETTGRQSNILIRADESLNALVLLAEPDLV 329

Query: 181 S--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           +  + ++  L++    QV ++  I EV  DI   +G Q ++    +          G   
Sbjct: 330 ATLEDIVRQLDVP-RAQVMVEAAIVEVSGDITDAVGVQWAVDARGNTGGLGGVNFGGTGL 388

Query: 239 V---------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +          +    F  ++ AL   +    L+ P+L  +  Q
Sbjct: 389 SVGTVLQILQSGEIPENTTLPDGAIIGIGSDRFGALITALSANSKSNLLSTPSLLTLDNQ 448

Query: 284 SASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            A    G    ++T S +          T++   D GV L  TP++     + L I+ E+
Sbjct: 449 KAEILVGQNVPFQTGSYTTDASGAGNPFTTIERKDIGVTLKVTPSINEGATLRLEIEQEI 508

Query: 337 SEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           S                   R   +T+    G  IVL GL++DD+ Q    +PLL  IP+
Sbjct: 509 SSIAPSTGLNAQAVDLVTNKRSIKSTILADDGQVIVLGGLIQDDVTQSISKVPLLGDIPL 568

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +G LFR++R +  +  + +   P +V+  A 
Sbjct: 569 IGGLFRSTRDSHVKRNLMVFLRPTVVRDGAG 599


>gi|325498531|gb|EGC96390.1| type II secretion protein GspD [Escherichia fergusonii ECD227]
          Length = 686

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|193734249|gb|ACF19898.1| PilQ [Kingella kingae]
          Length = 700

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219
             NQ      +++++ L++  + QV ++  I E    + + +G +               
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480

Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                         +S    +F  +      S     SV       +    L A+E    
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            +T++ P +     + A    G Q  Y    SS G +S    D  + L  TP +    +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599

Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +      +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L  IP+LG LF++   +R   E+    TP +
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690


>gi|189351753|ref|YP_001947381.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
 gi|189335775|dbj|BAG44845.1| type IV pilus assembly protein [Burkholderia multivorans ATCC
           17616]
          Length = 528

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             +Q    L      Q   ++   +++    NLL +                      QV
Sbjct: 203 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 262

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
            ++  I E  +   + +G + ++                    +   AA     F +   
Sbjct: 263 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAGASPAGARTALDLAARPLAGFDAATA 322

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F++         +  L ALE     + ++ P +       A    G +  Y+      G
Sbjct: 323 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 381

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ 
Sbjct: 382 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 439

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V  
Sbjct: 440 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 497


>gi|315297663|gb|EFU56940.1| general secretion pathway protein D [Escherichia coli MS 16-3]
          Length = 681

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 370 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 429

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|254787478|ref|YP_003074907.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
 gi|237686656|gb|ACR13920.1| fimbrial assembly protein PilQ [Teredinibacter turnerae T7901]
          Length = 727

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 115/303 (37%), Gaps = 43/303 (14%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            +  +A+    T        +      K++++ ++I    QV ++  I     D  K++G
Sbjct: 422 SERGQAIVDERTNSIILTDTEEKIDQFKQLIDRIDIPVR-QVMIEARIVVANSDFRKELG 480

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVS---------------------------------- 240
           F+ +     S  S S   +F G   S                                  
Sbjct: 481 FRIAGDAVESSKSGSHIHEFTGSLDSVYADETSITGAFVDSDGDGTADRAHTFPQNSFVD 540

Query: 241 -----EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                  G  +   + + F     L AL+ +     +++P +     Q AS  SG    +
Sbjct: 541 LGVFNPTGSLAWNVISNNFMIGMELSALQDSGFAEIVSQPKVITGDKQQASIQSGTSVPF 600

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +  S+S G T ++  D  + L  TP +    RI +    E+ +  +      +P   +  
Sbjct: 601 QEESASGGTT-ISFKDVVLRLDVTPQITPDNRIIMD--LEILQDSVTGYESGVPIIDITH 657

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            DT+V +  G T+VL G+   + ++ +  +PLL  IP+LG LFR      ++ E+ I  T
Sbjct: 658 LDTSVLVADGDTVVLGGIYATEQRKGQSKVPLLGDIPLLGRLFRYDISQEDKRELLIFIT 717

Query: 416 PFL 418
           P +
Sbjct: 718 PRI 720


>gi|254038140|ref|ZP_04872198.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|226839764|gb|EEH71785.1| general secretion pathway protein D [Escherichia sp. 1_1_43]
 gi|323971766|gb|EGB66992.1| general secretion pathway protein D [Escherichia coli TA007]
          Length = 686

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDAN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|221201610|ref|ZP_03574648.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
 gi|221207315|ref|ZP_03580325.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221172903|gb|EEE05340.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2]
 gi|221178426|gb|EEE10835.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD2M]
          Length = 571

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             +Q    L      Q   ++   +++    NLL +                      QV
Sbjct: 246 ARAQDVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
            ++  I E  +   + +G + ++                    +   AA     F +   
Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASAAGPRTALDLAARPLAGFDAATA 365

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F++         +  L ALE     + ++ P +       A    G +  Y+      G
Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ 
Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V  
Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540


>gi|172059384|ref|YP_001807036.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
 gi|171991901|gb|ACB62820.1| type IV pilus secretin PilQ [Burkholderia ambifaria MC40-6]
          Length = 553

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/295 (19%), Positives = 109/295 (36%), Gaps = 34/295 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +     L      Q   ++   +++    NLL +                      QV 
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIVQIAGLIDAIDRPSRQVR 288

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------GKFVSEGGD 244
           ++  I E  +   + +G + ++      P+   AA                G F +    
Sbjct: 289 IEARIVEGEQGFSRNLGARIALRAQGRAPTADGAASATDTRNALDLAARPLGGFEAATAG 348

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520


>gi|332973070|gb|EGK11007.1| type IV pilus biogenesis protein PilQ [Kingella kingae ATCC 23330]
          Length = 700

 Score =  169 bits (428), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 100/271 (36%), Gaps = 26/271 (9%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------ 219
             NQ      +++++ L++  + QV ++  I E    + + +G +               
Sbjct: 422 TDNQSVIQKFERLIDELDVPAK-QVMVEARIVEAADGVSRSLGVKFGARRNGATSWGGDW 480

Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                         +S    +F  +      S     SV       +    L A+E    
Sbjct: 481 NNSIALNNRSTNSGTSTGGVAFNPNVNLPVASATSSISVIHSWAAGALGLELSAMETENL 540

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            +T++ P +     + A    G Q  Y    SS G +S    D  + L  TP +    +I
Sbjct: 541 TKTISTPRVLTQDRKEAEIRQGTQIPYT-TRSSDGDSSTAFKDAVLSLKVTPRITPDSKI 599

Query: 329 GLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L I     EP    VNA   P    R   T   +  G T+V+ G+ ++ +      +PL
Sbjct: 600 ILDIAINKDEPDYNNVNAEGEPGIVTRAVKTQAMIEDGATLVVGGIYQEQMANNVSKVPL 659

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L  IP+LG LF++   +R   E+    TP +
Sbjct: 660 LGDIPVLGNLFKSRSRSRSRNELLFFITPRI 690


>gi|323966493|gb|EGB61926.1| general secretion pathway protein D [Escherichia coli M863]
 gi|327251745|gb|EGE63431.1| general secretion pathway protein D [Escherichia coli STEC_7v]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|301326853|ref|ZP_07220153.1| general secretion pathway protein D [Escherichia coli MS 78-1]
 gi|300846528|gb|EFK74288.1| general secretion pathway protein D [Escherichia coli MS 78-1]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|110643200|ref|YP_670930.1| type II secretion protein GspD [Escherichia coli 536]
 gi|194436907|ref|ZP_03069007.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218550223|ref|YP_002384014.1| general secretion pathway protein D [Escherichia fergusonii ATCC
           35469]
 gi|218555536|ref|YP_002388449.1| general secretion pathway protein D [Escherichia coli IAI1]
 gi|218696673|ref|YP_002404340.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|254162916|ref|YP_003046024.1| type II secretion protein GspD [Escherichia coli B str. REL606]
 gi|291284343|ref|YP_003501161.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300931844|ref|ZP_07147141.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|300950837|ref|ZP_07164722.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300958340|ref|ZP_07170482.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|110344792|gb|ABG71029.1| hypothetical type II secretion protein GspD [Escherichia coli 536]
 gi|194424389|gb|EDX40376.1| general secretion pathway protein GspD [Escherichia coli 101-1]
 gi|218353405|emb|CAU99456.1| general secretion pathway protein D precursor [Escherichia coli
           55989]
 gi|218357764|emb|CAQ90408.1| general secretion pathway protein D precursor [Escherichia
           fergusonii ATCC 35469]
 gi|218362304|emb|CAQ99925.1| general secretion pathway protein D precursor [Escherichia coli
           IAI1]
 gi|242378520|emb|CAQ33305.1| pulD [Escherichia coli BL21(DE3)]
 gi|253974817|gb|ACT40488.1| GspD, hypothetical type II secretion protein [Escherichia coli B
           str. REL606]
 gi|253978972|gb|ACT44642.1| GspD, hypothetical type II secretion protein [Escherichia coli
           BL21(DE3)]
 gi|284922988|emb|CBG36080.1| type II secretion system protein D [Escherichia coli 042]
 gi|290764216|gb|ADD58177.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           CB9615]
 gi|300314983|gb|EFJ64767.1| general secretion pathway protein D [Escherichia coli MS 175-1]
 gi|300449873|gb|EFK13493.1| general secretion pathway protein D [Escherichia coli MS 116-1]
 gi|300460267|gb|EFK23760.1| general secretion pathway protein D [Escherichia coli MS 187-1]
 gi|320656346|gb|EFX24253.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320666867|gb|EFX33843.1| General secretion pathway protein D [Escherichia coli O157:H7 str.
           LSU-61]
 gi|324114991|gb|EGC08956.1| general secretion pathway protein D [Escherichia fergusonii B253]
 gi|332344919|gb|AEE58253.1| general secretion pathway protein GspD [Escherichia coli UMNK88]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|320661717|gb|EFX29125.1| General secretion pathway protein D [Escherichia coli O55:H7 str.
           USDA 5905]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|293416407|ref|ZP_06659046.1| general secretion pathway protein D [Escherichia coli B185]
 gi|291431763|gb|EFF04746.1| general secretion pathway protein D [Escherichia coli B185]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGANNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGHLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|254482717|ref|ZP_05095955.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
 gi|214037076|gb|EEB77745.1| type IV pilus secretin PilQ subfamily, putative [marine gamma
           proteobacterium HTCC2148]
          Length = 692

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 57/296 (19%), Positives = 109/296 (36%), Gaps = 32/296 (10%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           I      V  + T            +  ++++  ++I    QV ++  I   + D+   +
Sbjct: 393 ISQRGSVVVDARTNSLIITDTAAKLAEIRELIEQVDIPVR-QVMIESRIVIAQSDLTHSL 451

Query: 214 GFQHSITGSSSGPSKSFAADFGGK---------------------------FVSEGGDFS 246
           G +              +A    +                            V+    F+
Sbjct: 452 GIEWGGGYIDDVNGNILSASGDAQNVIGLNNSIINGETPSVSYPGALLVDLGVASTSGFA 511

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +    +       + ALE A     +++P +     Q A+  SG +  Y+  ++S GATS
Sbjct: 512 LGFTSNDLFLTAEISALEAAGQGEVVSQPKVITGDKQQATIKSGTEIPYQEAAAS-GATS 570

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            +  +  + L  TP +    R+ L +      V + V     G +PS    +  T V + 
Sbjct: 571 TSFKEAVLELEVTPNITPDDRVMLDLNVKQDSVGDLVPSGQGGFIPSIDTTEITTQVLVG 630

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ K +  +    +P    +P +GA FR+   N  +TE  I  TP ++
Sbjct: 631 NGETVVLGGVFKTEDLETVNKVPFFGDLPYVGAFFRSESRNNTKTETLIFITPRIL 686


>gi|188990354|ref|YP_001902364.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris str. B100]
 gi|167732114|emb|CAP50306.1| Fimbrial assembly protein pilQ precursor [Xanthomonas campestris
           pv. campestris]
          Length = 626

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 47/261 (18%), Positives = 100/261 (38%), Gaps = 27/261 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
              DQV ++  I        + +G +  + G+ +                          
Sbjct: 364 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 423

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    +     +   +   F+ +  L AL++      ++ P +   + +      G
Sbjct: 424 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 483

Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
            +  Y T++  T       +V   +  + L  TPT+ +  R+ L +     EV E +   
Sbjct: 484 REIGYVTITGGTAGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDELIELP 543

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N G +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF++   
Sbjct: 544 NYGTVPSINRREINTAVLVDDGQTVVIGGVYEFSDRSSVNKVPFLGDVPFLGNLFKSRGR 603

Query: 404 NREETEIFIAATPFLVKPVAM 424
           ++++ E+ I  TP +++  + 
Sbjct: 604 SKDKAELLIFITPKVLRVASA 624


>gi|83943483|ref|ZP_00955942.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
 gi|83845715|gb|EAP83593.1| general secretion pathway protein D [Sulfitobacter sp. EE-36]
          Length = 631

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 73/407 (17%), Positives = 153/407 (37%), Gaps = 29/407 (7%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA-DVVVHSPRTMYLFGKN 93
           + I     + G G ++S+     ++L          +     A DV            + 
Sbjct: 188 SAILEVLGQAGTGARLSVDAGSNLLLVRGTPEDIAEIRSLAIAMDVAPRKDPR-----EA 242

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           V      L   D + + ++      D   +   +   +   +         V L+ +V  
Sbjct: 243 VATTVFNLQYGDAQIIADIIKGTVGDATDITNAVAADVGAQSAEATSDGQFVPLNRVV-- 300

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D+       ET                ++++ L++    QV ++  I EV  ++ +++
Sbjct: 301 APDAVNITASVETNSIVVRGTAAQVQEVGQLVHALDVRRP-QVMIEAAIVEVSGEVAERL 359

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-------------LDRFSFETVL 260
           G Q  +  +    + + +    G  VS G   +  GV                  F  ++
Sbjct: 360 GVQLGLGPNVPNGAIAASNFSNGGGVSLGSVLAAVGVPAGSALSTGLTLGAGGNDFGILV 419

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314
            AL ++T+ R L+ P++T +  + A+   G    +         +++T  T++   D G+
Sbjct: 420 QALSQSTSARLLSTPSVTTLDNEPATIVVGQNVPFRTGSFATDGNTATPFTTIERRDVGI 479

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            ++  P + + G + L I+ E+S      V          R  +TTV   + GT+VL GL
Sbjct: 480 TMNVVPRITAGGVVQLVIEQEISSLTNANVEGAADLVTNRRVINTTVMADNRGTVVLGGL 539

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + DD       +P L  +P++G LF++      +  +F+   P +++
Sbjct: 540 ITDDRINGSSKVPGLGDLPVVGELFKSRNARNTQRTLFVFLRPTILR 586


>gi|163781944|ref|ZP_02176944.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883164|gb|EDP76668.1| putative type II secretion system protein [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 518

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 56/244 (22%), Positives = 99/244 (40%), Gaps = 19/244 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++  I E+    + Q G   S        + +         +  GG FS+  V   
Sbjct: 273 KQVLIEAKIVEIALSDVFQYGIDWSTFFRDVFGTGANVTLSQTLSIPTGGFFSLNVV--S 330

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307
             F T+++AL     + TL+ P +   +GQ+A   +G    +    + T   +       
Sbjct: 331 SDFSTLVNALATYGKVYTLSNPRIMVSNGQTALIATGIVTPFFERQAVTITGTTTTQIQE 390

Query: 308 ----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKA 356
               T    GV+L  TP +   G I + I    +         V G    + P   +++ 
Sbjct: 391 NIVKTNVLEGVLLGVTPYIDDNGSIVMNIIPVATRLEGSKTLEVNGQVLAEAPILNIKET 450

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G  +V+ GL+ D     +  +P L  IP+LG LF++ R  +E+ E+ I   P
Sbjct: 451 GTIVRVRNGELVVIGGLIGDVRSVQERKVPGLGDIPVLGYLFKSKRTVKEKRELIIFLRP 510

Query: 417 FLVK 420
            ++ 
Sbjct: 511 RIID 514


>gi|167045577|gb|ABZ10227.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG10I20]
          Length = 648

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234
           + +L+I+   QV ++  I E+ +   +++G    +     G                   
Sbjct: 399 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 457

Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    V+         +    +    L ALE++   R ++ P +T    + A   S
Sbjct: 458 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 517

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G    Y+  S      S+   +  + L  TP V S   I + I    +       A  +P
Sbjct: 518 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 575

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++  T V + +G T VLAG+ +    + K+ +P  SK+P++G LFR         E
Sbjct: 576 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 635

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 636 LLVFITPTIV 645


>gi|225848499|ref|YP_002728662.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643373|gb|ACN98423.1| PilQ [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 604

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 55/252 (21%), Positives = 100/252 (39%), Gaps = 24/252 (9%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------------SKSFA 231
              Q++++  I ++    +K +G Q     S+                         ++A
Sbjct: 351 RPYQISIEARIVQISSKNVKDLGIQWGGLASNIDNNNTKIIAGTNSTSYLANYRPGSAYA 410

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            DF        G FS+  +L       +  L AL+     + L++P++  I G++A  + 
Sbjct: 411 VDFPAVQSKIPGGFSLGFILGGTQNFLDIRLSALQSIGKSKILSKPSVITIDGETAEISQ 470

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
           G +  Y T  ++ G T  SV+     + L+ TP   + G I + +      P        
Sbjct: 471 GYEIPYTTAVAAGGGTVSSVSFKKAVLKLNVTPRTTADGNIIMDLIITQDIPDFKNLLLG 530

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P  + +   + V    G  +V+ G+L+        G+P L  IPILG LF+ +      
Sbjct: 531 NPPIQTKTVTSKVVAKDGSVVVIGGILEKTEDTQTSGVPGLMNIPILGNLFKENFKQDTS 590

Query: 408 TEIFIAATPFLV 419
           TE+ I  +P +V
Sbjct: 591 TELLIFLSPKIV 602


>gi|22127802|ref|NP_671225.1| putative outer membrane porin HofQ [Yersinia pestis KIM 10]
 gi|45440014|ref|NP_991553.1| putative outer membrane porin HofQ [Yersinia pestis biovar Microtus
           str. 91001]
 gi|108814075|ref|YP_649842.1| putative outer membrane porin HofQ [Yersinia pestis Nepal516]
 gi|150260832|ref|ZP_01917560.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|218927361|ref|YP_002345236.1| putative outer membrane porin HofQ [Yersinia pestis CO92]
 gi|229310101|ref|YP_072232.2| outer membrane porin HofQ [Yersinia pseudotuberculosis IP 32953]
 gi|229358042|ref|YP_653226.2| putative outer membrane porin HofQ [Yersinia pestis Antiqua]
 gi|294502239|ref|YP_003566301.1| putative membrane transport protein [Yersinia pestis Z176003]
 gi|21960932|gb|AAM87476.1|AE013997_11 putative transport portein [Yersinia pestis KIM 10]
 gi|45434869|gb|AAS60430.1| putative membrane transport protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108777723|gb|ABG20242.1| membrane transport protein [Yersinia pestis Nepal516]
 gi|115345972|emb|CAL18836.1| putative membrane transport protein [Yersinia pestis CO92]
 gi|149290240|gb|EDM40317.1| putative membrane transport protein [Yersinia pestis CA88-4125]
 gi|262364270|gb|ACY60827.1| putative membrane transport protein [Yersinia pestis D182038]
 gi|294352698|gb|ADE63039.1| putative membrane transport protein [Yersinia pestis Z176003]
          Length = 374

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/233 (25%), Positives = 96/233 (41%), Gaps = 6/233 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GV 250
            QV L   I  +  + L+++G +    G   G +     DF           SV      
Sbjct: 143 QQVQLSAHIVTISSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVAR 201

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +     E  L ALE+   +  +A P L     Q+AS   G    Y        A ++   
Sbjct: 202 IGGRLLELELSALEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFK 261

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P I +     +M     ++  T V +  G TI
Sbjct: 262 EAVLGMEVTPKILRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETI 321

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           VL G+ +   +Q    +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 322 VLGGIFQQKKRQSVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 374


>gi|222109862|ref|YP_002552126.1| general secretion pathway protein d [Acidovorax ebreus TPSY]
 gi|221729306|gb|ACM32126.1| general secretion pathway protein D [Acidovorax ebreus TPSY]
          Length = 781

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 102/270 (37%), Gaps = 34/270 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV ++  I EV  + + + G Q      + G +     +          D ++   
Sbjct: 431 GRRAQVLIESLIVEVSANKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490

Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
               +                           + + LE       L+ P L  +  + A 
Sbjct: 491 TGNVTSIASAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550

Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              G    + T S +            T+V   D G++L   P +   G + L +  EVS
Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610

Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +      +  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P++  +P++G 
Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALNQDKVPVMGDLPVVGG 670

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LFRN +  R++T + +   P +++  A  D
Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSAASD 700


>gi|157157281|ref|YP_001464424.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188495193|ref|ZP_03002463.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|191169103|ref|ZP_03030864.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|193062082|ref|ZP_03043178.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|260869724|ref|YP_003236126.1| putative type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300824048|ref|ZP_07104169.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300905916|ref|ZP_07123648.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|301304138|ref|ZP_07210254.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|307310403|ref|ZP_07590051.1| general secretion pathway protein D [Escherichia coli W]
 gi|309794068|ref|ZP_07688493.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|331669777|ref|ZP_08370622.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331679035|ref|ZP_08379707.1| general secretion pathway protein D [Escherichia coli H591]
 gi|157079311|gb|ABV19019.1| general secretion pathway protein D [Escherichia coli E24377A]
 gi|188490392|gb|EDU65495.1| general secretion pathway protein D [Escherichia coli 53638]
 gi|190900855|gb|EDV60643.1| general secretion pathway protein GspD [Escherichia coli B7A]
 gi|192932302|gb|EDV84900.1| general secretion pathway protein GspD [Escherichia coli E22]
 gi|257766080|dbj|BAI37575.1| predicted type II secretion protein GspD [Escherichia coli O111:H-
           str. 11128]
 gi|300402269|gb|EFJ85807.1| general secretion pathway protein D [Escherichia coli MS 84-1]
 gi|300523438|gb|EFK44507.1| general secretion pathway protein D [Escherichia coli MS 119-7]
 gi|300840551|gb|EFK68311.1| general secretion pathway protein D [Escherichia coli MS 124-1]
 gi|306909298|gb|EFN39793.1| general secretion pathway protein D [Escherichia coli W]
 gi|308122475|gb|EFO59737.1| general secretion pathway protein D [Escherichia coli MS 145-7]
 gi|309703398|emb|CBJ02737.1| type II secretion system protein D [Escherichia coli ETEC H10407]
 gi|315062282|gb|ADT76609.1| type II secretion system lipoprotein D [Escherichia coli W]
 gi|315253339|gb|EFU33307.1| general secretion pathway protein D [Escherichia coli MS 85-1]
 gi|323178670|gb|EFZ64246.1| general secretion pathway protein D [Escherichia coli 1180]
 gi|323377134|gb|ADX49402.1| general secretion pathway protein D [Escherichia coli KO11]
 gi|331062690|gb|EGI34604.1| general secretion pathway protein D [Escherichia coli TA271]
 gi|331073100|gb|EGI44423.1| general secretion pathway protein D [Escherichia coli H591]
          Length = 686

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|171060077|ref|YP_001792426.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
 gi|170777522|gb|ACB35661.1| type IV pilus secretin PilQ [Leptothrix cholodnii SP-6]
          Length = 726

 Score =  169 bits (428), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 96/299 (32%), Gaps = 45/299 (15%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSI-- 219
           +    +         S  ++V  ++        QV ++  I E      + +G +     
Sbjct: 421 AYESRTNQLFVSDLPSKLEEVAQMIAKIDVPVRQVMIEARIVEAEDSFGRTLGVKLGATD 480

Query: 220 ----TGSSSGPSKSFA-----------------------------------ADFGGKFVS 240
                G   G   +                                         G   +
Sbjct: 481 LRGINGGVPGWGGNNTRIALGGNYSSIGDTTLQQATGSIYANSQFVNLPANTSSLGGATA 540

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                S+ G          L ALE     + ++ P +       A    G +  Y+T  +
Sbjct: 541 ATFALSLFGASSNRFLNLELSALEAEGKGKLVSSPRVVTADQVKALIEQGTELPYQTGGN 600

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              A S+      + L  TP +   G I +    +V++  +G       +   +   T V
Sbjct: 601 QQTAPSIAFRKATLKLEVTPQITPEGNIIMD--VDVNKDSVGQQTLAGFAINTKHVKTQV 658

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + +GGT+V+ G+ +    +    +P+L  IP LG LFRN      +TE+ +  TP ++
Sbjct: 659 LVENGGTVVIGGIFETTETESVNKVPVLGDIPFLGVLFRNKTRVANKTELLVFLTPKVI 717


>gi|209920436|ref|YP_002294520.1| putative type II secretion protein [Escherichia coli SE11]
 gi|256019113|ref|ZP_05432978.1| putative type II secretion protein [Shigella sp. D9]
 gi|332280218|ref|ZP_08392631.1| general secretion pathway protein D [Shigella sp. D9]
 gi|209913695|dbj|BAG78769.1| putative type II secretion protein [Escherichia coli SE11]
 gi|320201874|gb|EFW76449.1| General secretion pathway protein D [Escherichia coli EC4100B]
 gi|332102570|gb|EGJ05916.1| general secretion pathway protein D [Shigella sp. D9]
          Length = 686

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|51243965|ref|YP_063849.1| type II protein secretion protein [Desulfotalea psychrophila LSv54]
 gi|50875002|emb|CAG34842.1| related to type II protein secretion protein [Desulfotalea
           psychrophila LSv54]
          Length = 559

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/304 (19%), Positives = 107/304 (35%), Gaps = 36/304 (11%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI-------AGEDQVTLKVTIAE 204
           ++   ++R       ++          S+ + V++ L+            Q+ +   I E
Sbjct: 256 QSPTATRRYAAGGAMYIIDKPIGLITVSAPRNVLDRLDAYFFSLKKELYKQIAIDAKIIE 315

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLH 261
           V       IG   S      G       ++G    +    G  F     L+   F  ++ 
Sbjct: 316 VTLSDASSIGIDWSNVLGGDGFKLGGKVNYGDATDAIFHNGSGFLDTITLESTDFHVLIK 375

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------------SVTT 309
           AL      + L+ P L+ ++GQ A  + G    Y +   +   T               +
Sbjct: 376 ALNEQGDTKVLSNPKLSVMNGQPALISVGRSITYISEIEADRDTSSIGTSTITYTTETDS 435

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------------GVNAGDMPSYRVRK 355
              G+ L  T TVL    I + +    SE V                  +  +P   VR+
Sbjct: 436 LLSGLGLGITATVLDDSEIIMNLVPVTSELVPFKDGEEIEYRQVGDDGASVGLPVLNVRE 495

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             TTV +  G T+++ GL+ +        +P+L  IP L  LF     ++++ E+ I   
Sbjct: 496 MSTTVRVKDGETLIIGGLISESNSTTGSSVPILGSIPGLKYLFGYEGKSKQKKELVILIQ 555

Query: 416 PFLV 419
           P ++
Sbjct: 556 PRII 559


>gi|193067486|ref|ZP_03048454.1| general secretion pathway protein GspD [Escherichia coli E110019]
 gi|192959443|gb|EDV89878.1| general secretion pathway protein GspD [Escherichia coli E110019]
          Length = 686

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|157162438|ref|YP_001459756.1| general secretion pathway protein D [Escherichia coli HS]
 gi|157068118|gb|ABV07373.1| general secretion pathway protein D [Escherichia coli HS]
          Length = 686

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|254293816|ref|YP_003059839.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
 gi|254042347|gb|ACT59142.1| general secretion pathway protein D [Hirschia baltica ATCC 49814]
          Length = 660

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 112/291 (38%), Gaps = 44/291 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKF 238
           ++V+  L+     QV ++  I E+  +  +++G +  ++GS S  +   A +F       
Sbjct: 339 ERVVEELDQR-RSQVLVEAIIVELSDNAARELGLEFVLSGSGSSATPFAATNFTRSTTNV 397

Query: 239 VSEGGDFSVKG--------------------------------VLDRFSFETVLHALERA 266
           +S  G  ++                                    D   F  +++A++  
Sbjct: 398 LSLAGALALDSDTVGEETVSSLRSAAISSLLGSAGGLLGIGGQSSDGTIFGAIINAVDSD 457

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPT 321
                L+ P L  +  + AS T G +    T      ++S    +V     GV L   P 
Sbjct: 458 ITSNVLSTPHLLTMDNEKASITVGQEVPITTGEALGTNNSNPFRTVERKPLGVTLEVEPQ 517

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +     I L ++ EVS     ++  D      R+ +TT+    G  +VL GL++++    
Sbjct: 518 IGEGDSIKLNLRQEVSSIFDSIDGTDF-ITNNREINTTILADDGEIVVLGGLIQEEETLN 576

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              +PLL  IP +G LF +    ++ T + +   P +V+      + R  D
Sbjct: 577 ISKVPLLGDIPGVGRLFSSEGTTKKRTNLMVFLKPTIVR--DAETMQRATD 625


>gi|76809042|ref|YP_335094.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
 gi|76578495|gb|ABA47970.1| type II/III secretion system protein [Burkholderia pseudomallei
           1710b]
          Length = 575

 Score =  169 bits (428), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 148 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 206

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 207 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 263

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 264 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 323

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 324 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 383

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 384 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 443

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 444 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 500

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 501 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 560

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 561 SELVVYITPTVV 572


>gi|323978963|gb|EGB74043.1| general secretion pathway protein D [Escherichia coli TW10509]
          Length = 686

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSE---------------------- 241
                 G Q +   +     +  ++      G    +                       
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATIINPDTN 434

Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                      G       + +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|262380438|ref|ZP_06073592.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
 gi|262297884|gb|EEY85799.1| general secretion pathway protein D [Acinetobacter radioresistens
           SH164]
          Length = 718

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 51/275 (18%), Positives = 102/275 (37%), Gaps = 33/275 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
           ++++LL++A + QV ++  I     D  K++G +  I       +               
Sbjct: 445 RMIDLLDVAVK-QVMVEARIVRASTDFTKEMGVKWGILSQGITRNNSLLVGGSETTLWNL 503

Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                          +   D G               L  F  +  L AL+       ++
Sbjct: 504 RDPDDEGKYTIERPQNLNVDLGVTAPGASRIAFGLISLSDFMLDLELSALQADGYGEVIS 563

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            P +     Q A   SG Q  Y++         ++    D  + L+ TP++   G+I + 
Sbjct: 564 TPKVLTADKQQARVASGTQIPYQSSEGGGANAVSTTEFVDATLSLNVTPSITPDGKIQML 623

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +    S+           +    + +T V + +G T+VL G+ + + +  +  +P+L  +
Sbjct: 624 LNIT-SDTPGNPTPTGQIAINKNEINTNVLVNNGETVVLGGIFEQETRNTQTKVPVLGDL 682

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P +G LFR    +  + E+ I  TP +V   A  +
Sbjct: 683 PGVGRLFRRDAKSDNKRELLIFVTPRIVNDSATGN 717


>gi|254180385|ref|ZP_04886983.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254190347|ref|ZP_04896855.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|254261204|ref|ZP_04952258.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
 gi|157938023|gb|EDO93693.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pasteur
           52237]
 gi|184210924|gb|EDU07967.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1655]
 gi|254219893|gb|EET09277.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1710a]
          Length = 445

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 18  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 76

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 77  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 133

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 134 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 193

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 194 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 253

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 254 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 313

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 314 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 370

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 371 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 430

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 431 SELVVYITPTVV 442


>gi|90020990|ref|YP_526817.1| Type II secretory pathway component PulD-like protein
           [Saccharophagus degradans 2-40]
 gi|89950590|gb|ABD80605.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 546

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 108/258 (41%), Gaps = 23/258 (8%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           ++ +  A + QV ++ TI EV      Q G   S+   +     +  A      V+    
Sbjct: 272 LSEIMFASQRQVLIEATIVEVTLSERYQAGIDWSVLQQNVADGVTRTATQDVLDVTLQDP 331

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA-----------SFTSGGQH 293
                 + + +    + AL+    +  ++ P +  ++ Q+A           +     + 
Sbjct: 332 VFTITHVGK-NLSATVKALDTFGDVSVMSSPKVMTLNNQTALLKVVDNLVYFTVDVNIET 390

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIG 342
                S++T  T V T   G V+  TP +   G + L I+  +S                
Sbjct: 391 NESGPSTTTFETEVNTVPIGFVMSVTPFINEFGYVTLNIRPTISRVIGLKRDPNPALAQV 450

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
               ++P  +VR+ ++ +++P G   ++ GL++D+    + G+P LSKIP++G LF+ + 
Sbjct: 451 NVVNEIPEIQVREVESVLKIPDGEVAIIGGLMQDEQDNTEHGVPGLSKIPLVGGLFKYTD 510

Query: 403 FNREETEIFIAATPFLVK 420
              +++E+ I   P +V 
Sbjct: 511 DKVKKSELVIFIKPIVVD 528


>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ [Herminiimonas arsenicoxydans]
 gi|133740179|emb|CAL63230.1| Putative type IV pilus biogenesis secretin PilQ [Herminiimonas
           arsenicoxydans]
          Length = 697

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/257 (19%), Positives = 92/257 (35%), Gaps = 32/257 (12%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------------------------GS 222
              QV ++  I E        +G +                                  +
Sbjct: 437 ASRQVMIEARIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQNADASAPGLNLTNLQT 496

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +G + +  A             ++            L ALE     + ++ P +     
Sbjct: 497 VNGNAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVITADQ 556

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
             A    G +  Y+  +SS GATSV+     + L  TP +   G + L    +V++  +G
Sbjct: 557 LKALIEQGTELPYQQATSS-GATSVSFRKANLRLEVTPQITPDGNVILD--VDVNKDSVG 613

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           V      +   +   T V + +GGT+V+ G+ +   +     +P    IP+LG LF+ + 
Sbjct: 614 VETRSGFAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLGNLFKTTG 673

Query: 403 FNREETEIFIAATPFLV 419
              ++TE+ I  TP ++
Sbjct: 674 RTNDKTELLIFLTPKIL 690


>gi|254357308|ref|ZP_04973582.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
 gi|148026372|gb|EDK84457.1| type IV pilus secretin PilQ [Burkholderia mallei 2002721280]
          Length = 552

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 538 SELVVYITPTVV 549


>gi|221213453|ref|ZP_03586428.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
 gi|221166905|gb|EED99376.1| type IV pilus secretin PilQ [Burkholderia multivorans CGD1]
          Length = 571

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 34/298 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             +Q    L      Q   ++   +++    NLL +                      QV
Sbjct: 246 ARAQEVQRLLAGATGQRLLSKRGAAAADARTNLLFVTDLAPRIAQIADLIAALDRPSRQV 305

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGG 243
            ++  I E  +   + +G + ++                    +   AA     F +   
Sbjct: 306 RIEARIVEGEQGFSRHLGARLALRAQGRPAAAEAAASPAGARTALDLAARPLAGFDAATA 365

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F++         +  L ALE     + ++ P +       A    G +  Y+      G
Sbjct: 366 GFTLLAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKALVEQGAELPYQ-AKVGNG 424

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            T V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ 
Sbjct: 425 VTGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVD 482

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V  
Sbjct: 483 DGGTVAIGGIYERLHRHDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFITPTIVSA 540


>gi|239994918|ref|ZP_04715442.1| putative Mannose-sensitive agglutinin (MSHA) biogenesis protein
           MshL (pilus type IV) [Alteromonas macleodii ATCC 27126]
          Length = 582

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 110/313 (35%), Gaps = 44/313 (14%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           +  + ++ V   +  L          +  K  +N    + + QV L+  I EV  +   Q
Sbjct: 250 SPTEGRQVVVSPQAGLVTVRALPSEIAVVKDFLNQSQESLQRQVVLEARIIEVTLNDGYQ 309

Query: 213 IGFQHSITGSSSGPSKSFAADFG------------------------GKFVSEGGDFSVK 248
            G +     S    S +F    G                        G  +S        
Sbjct: 310 QGVRWDRIASGLTGSVNFGFSGGAIASNFAANTAAGIDPAINAVNGIGNSISTDIGGVST 369

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
             + R  F+ V++ L+    ++ L+ P +T  + Q A    G    + T  S++      
Sbjct: 370 LRISRGDFDGVINMLQTQGDVQMLSNPRVTVTNNQKAVIKVGQDEYFVTDVSTSEDQSAT 429

Query: 303 -----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
                    +T    G+ L  TP +   G + L +   V+E         +         
Sbjct: 430 QTENENDIELTPFFSGIALDVTPQIDRSGSVILHVHPSVTETAEQTKVIQVGDQQILLPL 489

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
               +R++DT +    G  +V+ GL++    + +   PLL  IP +G  F+N    + + 
Sbjct: 490 AQSNIRESDTVIRARDGEIVVIGGLMETVTSEQESKTPLLGDIPFIGNAFKNKAKTQSKR 549

Query: 409 EIFIAATPFLVKP 421
           E+ I   P +V+P
Sbjct: 550 ELVILIRPSVVQP 562


>gi|218706590|ref|YP_002414109.1| general secretion pathway protein D [Escherichia coli UMN026]
 gi|300900296|ref|ZP_07118475.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331648754|ref|ZP_08349842.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331664576|ref|ZP_08365482.1| general secretion pathway protein D [Escherichia coli TA143]
 gi|218433687|emb|CAR14602.1| general secretion pathway protein D precursor [Escherichia coli
           UMN026]
 gi|300356186|gb|EFJ72056.1| general secretion pathway protein D [Escherichia coli MS 198-1]
 gi|331042501|gb|EGI14643.1| general secretion pathway protein D [Escherichia coli M605]
 gi|331058507|gb|EGI30488.1| general secretion pathway protein D [Escherichia coli TA143]
          Length = 686

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|53724296|ref|YP_104266.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|52427719|gb|AAU48312.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
          Length = 527

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 100 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 158

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 159 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 215

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 216 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 275

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 276 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 335

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 336 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 395

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 396 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 452

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 453 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 512

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 513 SELVVYITPTVV 524


>gi|167740501|ref|ZP_02413275.1| type II/III secretion system protein [Burkholderia pseudomallei 14]
 gi|167826105|ref|ZP_02457576.1| type II/III secretion system protein [Burkholderia pseudomallei 9]
 gi|167896189|ref|ZP_02483591.1| type II/III secretion system protein [Burkholderia pseudomallei
           7894]
 gi|167904571|ref|ZP_02491776.1| type II/III secretion system protein [Burkholderia pseudomallei
           NCTC 13177]
 gi|167912835|ref|ZP_02499926.1| type II/III secretion system protein [Burkholderia pseudomallei
           112]
 gi|167920795|ref|ZP_02507886.1| type II/III secretion system protein [Burkholderia pseudomallei
           BCC215]
 gi|254198490|ref|ZP_04904911.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
 gi|254201342|ref|ZP_04907706.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|147747236|gb|EDK54312.1| type IV pilus secretin PilQ [Burkholderia mallei FMH]
 gi|169655230|gb|EDS87923.1| type IV pilus secretin PilQ [Burkholderia pseudomallei S13]
          Length = 457

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 30  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 88

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 89  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 145

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 146 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 205

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 206 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 265

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 266 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 325

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 326 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 382

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 383 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 442

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 443 SELVVYITPTVV 454


>gi|269213782|ref|ZP_06158175.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
 gi|269145356|gb|EEZ71774.1| type IV pilus secretin PilQ [Neisseria cinerea ATCC 14685]
          Length = 327

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 106/269 (39%), Gaps = 32/269 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           K+++ L++    QV ++  I E      + +G +    G+    +  F +  GG      
Sbjct: 52  KLIDELDVPA-QQVMIEARIVEATDGFARDLGVKFGYGGTERQTAWGFNSGSGGISAANN 110

Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                                    +     ++   L   +    L A E+ +  +TLA 
Sbjct: 111 GGTGGNIGTSSGRWSVNTNINLPVAAAANSIALVRALSSGALNLELSASEQLSKTKTLAN 170

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRI 332
           P +   + Q A   SG +  Y+  S+S   T+ T       + L  TP +   G+I + +
Sbjct: 171 PRVLTQNRQEAKIESGTEIPYQDTSTSGNNTTTTTTFKKAVLGLVVTPNITPDGQIIMNV 230

Query: 333 QTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +     P    V        + +  DT   + +GGT+++ G+ +++       IPLL  I
Sbjct: 231 KINKDTPIDCRVKNEATKCIQTKNLDTQAMVENGGTLIVGGIYEEENGNTLTKIPLLGDI 290

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           P++G LF+  + N+   E+ I  TP ++ 
Sbjct: 291 PVIGNLFKTRQNNQSRRELLIFITPRIMD 319


>gi|281180003|dbj|BAI56333.1| putative type II secretion protein [Escherichia coli SE15]
          Length = 659

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 289 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 347

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 348 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 407

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 408 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 467

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 468 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 527

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 528 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 585

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 586 KRNLMVFIRPTILRDGMAAD 605


>gi|24371766|ref|NP_715808.1| general secretion pathway protein D [Shewanella oneidensis MR-1]
 gi|24345556|gb|AAN53253.1|AE015466_13 general secretion pathway protein D [Shewanella oneidensis MR-1]
          Length = 704

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/281 (22%), Positives = 106/281 (37%), Gaps = 45/281 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 396

Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 397 WQAQDKEGTYITNPSTGEVIGQNPKTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 456

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +         + ++S    +V   + GV L   
Sbjct: 457 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 516

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 517 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 574

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  + +P L  IPILG LF++S   + +  + I   P +++
Sbjct: 575 ESIQKVPFLGDIPILGHLFKSSSSKKTKKNLMIFIKPTIIR 615


>gi|118579431|ref|YP_900681.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
 gi|118502141|gb|ABK98623.1| type IV pilus secretin PilQ [Pelobacter propionicus DSM 2379]
          Length = 864

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 17/241 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG---------------SSSGPSKSFAADFGGK 237
           E QV ++  I E      + +G    +                    G + +      G 
Sbjct: 621 EKQVMIEARIVEATSTFTRSLGVNWGVHYTDASGSLLGITQLDTGFGGITTAPPTSGTGD 680

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                   S   + +    +  L A   A  I+ ++ P +  ++ + A    G Q  Y  
Sbjct: 681 SAGGNMGISFGALGNGVQLDMRLSAAATAGLIKIISCPKVATLNNKKAKIAQGQQIPYTA 740

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                  T     +  + L  TP + + G I + I  +       V +   P+   ++A 
Sbjct: 741 SDGDNVETK--FVEAALSLEVTPHINANGTISMNIVAKNDSMGDAVGSSTAPAINTKEAT 798

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + L  G T V+ G+  D       G+P L  IP +G  F+ +   + +TE+ +  TP 
Sbjct: 799 TEMLLRDGETTVIGGIFVDTDNDSDAGVPFLMDIPAIGKFFKTNSKTKTKTELLVFITPR 858

Query: 418 L 418
           +
Sbjct: 859 I 859


>gi|1772618|gb|AAC31975.1| HrcC [Erwinia chrysanthemi]
          Length = 691

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 68/451 (15%), Positives = 138/451 (30%), Gaps = 40/451 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G  + I++  N     +   D + V++     A V   +     + + +     G A +
Sbjct: 158 TGPTEYINLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213

Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS--NIRVEMVSDTVVL-------H 148
           +  L+  +               +   M             +   ++   +L        
Sbjct: 214 LNELMDGNRNTPAGAAGAGSGIGSDGGMATADGAGGGLDASKSIEMNARSMLARLASRNS 273

Query: 149 GMVRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAE 204
           G   +    +  +   +S    + +   +       +   L++     Q  V +   I +
Sbjct: 274 GAAASASRKKDQLNGRVSADVRNNALLVRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILD 333

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V R  L ++         +     +  +     FVS           D   F   + ALE
Sbjct: 334 VDRTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFSADIQALE 382

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                  +A P++  +  Q A                    +V     G  L  TP V+ 
Sbjct: 383 GEGTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVG 440

Query: 325 PGRIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLK 382
            G    +++  ++ +  +  N     S   R    T   +     +VL G   ++     
Sbjct: 441 HGSTSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRD 500

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
           + +PLL  IP +G LF + +      E     TP L+            D+    +DA  
Sbjct: 501 KRVPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMG 560

Query: 443 FFFNRVNK--IYGPKEASEVEGQNYKGAIGF 471
               R +K  ++G  E +  +  + +   GF
Sbjct: 561 RVAQRNSKTDLFGTVENALRDLASGQTPAGF 591


>gi|53804514|ref|YP_113593.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
 gi|53758275|gb|AAU92566.1| general secretion pathway protein D [Methylococcus capsulatus str.
           Bath]
          Length = 751

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 61/287 (21%), Positives = 113/287 (39%), Gaps = 17/287 (5%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLNIAGEDQVTLKVTIAEV 205
           G   ++        +     + +             + V+  L++    QV +  TI E+
Sbjct: 429 GQGASMTQLGNNARVVADPANNALIVIAKPQDWKEIEAVIKALDV-LPLQVLIDATIVEI 487

Query: 206 RRDILKQIGFQHSITGSSSGPSKS-----FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                 Q G +  I+  SS  +          DF     S  G FS   + +  + + +L
Sbjct: 488 SLKNDLQYGLKWLISSGSSTEALGSPLAALVKDFINGAASASGGFSYALIANGGNVKVLL 547

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGV 314
           + L +   +  ++ P+L  ++ Q A    G Q              +T          GV
Sbjct: 548 NLLAQENLVNVISSPSLMVLNNQQAKINVGDQVPVLTGTTASATIGTTQFNQFQQQQSGV 607

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAG 372
            L   P V S G + L I   +S P          +++   R+  + V +P+G T+ L G
Sbjct: 608 TLQIRPRVNSGGLVSLEIFQAISTPSPVEVGSGQKTFQFANREIQSVVAVPNGQTLALGG 667

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L+ D   + + G+P L++IP++G +F ++    E TE+ +  TP +V
Sbjct: 668 LISDKRSETQTGLPYLNQIPMIGWMFGSTEIKPERTELVVLITPRVV 714


>gi|53720777|ref|YP_109763.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52211191|emb|CAH37180.1| putative secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 442

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 15  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 73

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 74  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 130

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 131 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 190

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 191 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 250

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 251 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 310

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 311 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 367

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 368 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 427

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 428 SELVVYITPTVV 439


>gi|332085659|gb|EGI90823.1| putative general secretion pathway protein D domain protein
           [Shigella dysenteriae 155-74]
          Length = 303

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 91/247 (36%), Gaps = 23/247 (9%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------------GGKFVSEGGD 244
            ++  I EV+      +G Q S     +    +                  G   S    
Sbjct: 2   LVEAIIVEVQDGNGLNLGVQWSNKNVGAQQFTNTGLPIFNAAQGVADYKKNGGITSANPA 61

Query: 245 FSVKGVLDR-------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           + +    +          +  +L AL        LA P++  +  + ASF  G      +
Sbjct: 62  WDMFSAYNGMAAGFFNGDWGVLLTALASNNKNDILATPSIVTLDNKLASFNVGQDVPVLS 121

Query: 298 VSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            S +        +V     G  L  TP V     + L I+ EVS      N+   P++  
Sbjct: 122 GSQTTSGDNVFNTVERKTVGTKLKVTPQVNEGDAVLLEIEQEVSSVDSSSNSTLGPTFNT 181

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V + +G T+VL GLL D  ++    +PLL  IP++G LFR +   R +  + + 
Sbjct: 182 RTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKRNLMVF 241

Query: 414 ATPFLVK 420
             P +++
Sbjct: 242 IRPTIIR 248


>gi|323183550|gb|EFZ68947.1| general secretion pathway protein D [Escherichia coli 1357]
          Length = 686

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|254524408|ref|ZP_05136463.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219721999|gb|EED40524.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 792

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 66/276 (23%), Positives = 115/276 (41%), Gaps = 30/276 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +V++ L+     QV ++  I EV +    ++G Q  +    +     F    GG  ++ G
Sbjct: 380 RVIDQLDQR-RAQVLVESLIVEVNQTDAAELGVQWMLGNGRTFGGTHFGGTTGGSGLNTG 438

Query: 243 -------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                              G  ++ GV    + + + +AL+       L+ P L  +  +
Sbjct: 439 ARTTLDVLPKDGLKIGVIDGTINLPGVGQILNMKALANALQSRGGANILSTPNLMTLDNE 498

Query: 284 SASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS   G    + +          S+    ++   D G+ L   P +   G + L I  E
Sbjct: 499 AASIMVGQTVPFVSGRYVTDGGGGSNNPFQTIVREDVGLKLRVRPQISEGGTVKLDIYQE 558

Query: 336 VSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS       +         R  DT+V L  G  +VL GLL+D +   ++ +P L KIP+L
Sbjct: 559 VSSIDAQSASSTAGIITNKRALDTSVLLDDGQIMVLGGLLEDSVSHGRDAVPGLGKIPVL 618

Query: 395 GALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSR 429
           GALFR+    R +T + +   P +V+ P A + L+R
Sbjct: 619 GALFRSDTRKRAKTNLMVFLRPHVVRDPAAGQRLTR 654


>gi|152980977|ref|YP_001355054.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
 gi|151281054|gb|ABR89464.1| PilQ type IV pilus assembly protein [Janthinobacterium sp.
           Marseille]
          Length = 686

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 49/250 (19%), Positives = 91/250 (36%), Gaps = 25/250 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------------------SKS 229
              QV ++  I E        +G + S    + G                       + +
Sbjct: 433 ATRQVMIEARIVEADDKFSSSLGAKLSFGVQNQGNYQLGGRQTSTTTAIGPPTLGGSAVN 492

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             A             ++            L ALE     + ++ P +       A    
Sbjct: 493 LPASTINSNTPGSVALTLFNAAATRFIGLELSALEADGKGKVISSPRVITADQLKALIEQ 552

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+  +SS GATSV+     + L  TP +   G + L    +V++  +GV      
Sbjct: 553 GTELPYQQATSS-GATSVSFRKANLKLEVTPQITPDGNVILD--VDVNKDTVGVETRSGF 609

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T V + +GGT+V+ G+ +   +     +P    IP+ G LF+ +    ++TE
Sbjct: 610 AIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVFGNLFKTTGRTNDKTE 669

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 670 LLIFLTPKIL 679


>gi|170765481|ref|ZP_02900292.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
 gi|170124627|gb|EDS93558.1| general secretion pathway protein GspD [Escherichia albertii
           TW07627]
          Length = 686

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 111/320 (34%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------------- 241
                 G Q +   +      +      G   +                           
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPETN 434

Query: 242 ----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                      G       + +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|67641888|ref|ZP_00440653.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|121600460|ref|YP_994488.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126439652|ref|YP_001060705.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126450056|ref|YP_001082319.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|226198301|ref|ZP_03793872.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|251767786|ref|ZP_02268424.2| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
 gi|254174977|ref|ZP_04881638.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|254206684|ref|ZP_04913035.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|121229270|gb|ABM51788.1| type II/III secretion system protein [Burkholderia mallei SAVP1]
 gi|126219145|gb|ABN82651.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 668]
 gi|126242926|gb|ABO06019.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147752226|gb|EDK59292.1| type IV pilus secretin PilQ [Burkholderia mallei JHU]
 gi|160696022|gb|EDP85992.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|225929821|gb|EEH25837.1| type IV pilus secretin PilQ [Burkholderia pseudomallei Pakistan 9]
 gi|238522900|gb|EEP86342.1| type IV pilus secretin PilQ [Burkholderia mallei GB8 horse 4]
 gi|243061735|gb|EES43921.1| type IV pilus secretin PilQ [Burkholderia mallei PRL-20]
          Length = 462

 Score =  169 bits (427), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 35  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 93

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 94  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 150

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 151 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 210

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 211 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 270

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 271 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 330

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 331 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 387

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 388 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 447

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 448 SELVVYITPTVV 459


>gi|107024260|ref|YP_622587.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
 gi|105894449|gb|ABF77614.1| Type IV pilus secretin PilQ [Burkholderia cenocepacia AU 1054]
          Length = 371

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 58/297 (19%), Positives = 108/297 (36%), Gaps = 34/297 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +Q    L      Q   ++   +++    NLL +                      QV 
Sbjct: 47  RAQDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRITQIAGLIDAIDRPSRQVR 106

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------SFAADFGGKFVSEGGD 244
           ++  I E  +   + +G + ++      P+                AA   G F +    
Sbjct: 107 IEARIVEGEQGFSRNLGARVALRAQGRPPAAEGASFTANARNALDLAARPLGGFDAATAG 166

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 167 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSELPYQ-AKVGNGM 225

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ +
Sbjct: 226 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVEN 283

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           GGT+ + G+ +   +     +PLL KIP LGALFR+     +  E+ +  TP +V  
Sbjct: 284 GGTVAIGGIYEQLNRNDVTRVPLLGKIPFLGALFRHRAQRDQRNELVVFITPTVVDA 340


>gi|307295325|ref|ZP_07575164.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
 gi|306878828|gb|EFN10047.1| type II and III secretion system protein [Sphingobium
           chlorophenolicum L-1]
          Length = 412

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/320 (26%), Positives = 127/320 (39%), Gaps = 23/320 (7%)

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV----MN 186
              +  RVE+  +  VL     + +  +     +                 + V     +
Sbjct: 61  YPRAIGRVEVDREG-VLSVAAPSPRSLRLTAIGAGEATVSVFGGDGGLIGREAVRVAPAD 119

Query: 187 LLNIAGEDQVT-LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-- 243
              +   +QV  + V  A V    LK +GF  S        +    +  G      GG  
Sbjct: 120 APVVRAGEQVVAVDVQFAAVSATTLKALGFNFSKLSGDIQGAIVSPSSLGSASFDPGGLS 179

Query: 244 ---------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F++           VL AL      + LA+PTL   SG+ ASF +GG+  
Sbjct: 180 LEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLLAQPTLLVRSGEQASFLAGGEFP 239

Query: 295 YKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDM 348
                +S       +   ++GV L  TP VLS   I L+I  EVSE      + +    +
Sbjct: 240 VPVPQASGSGNMLSIQYKEFGVRLSVTPFVLSKDHIVLKIAPEVSELDYANGVQLQGYVV 299

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  R R A+TTVEL SG + V+AGL        KE  P L  +P+LGA F+  +  +E+ 
Sbjct: 300 PGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTPFLGDLPVLGAFFKRQQNQKEKQ 359

Query: 409 EIFIAATPFLVKPVAMRDLS 428
           E+ I ATP LV  V   ++ 
Sbjct: 360 ELIIVATPRLVTAVKPEEVP 379


>gi|170695725|ref|ZP_02886867.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
 gi|170139330|gb|EDT07516.1| type IV pilus secretin PilQ [Burkholderia graminis C4D1M]
          Length = 581

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 108/296 (36%), Gaps = 33/296 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQV 196
             ++    L     +Q   ++    ++    NLL +                      QV
Sbjct: 287 ARAEDVRRLLTGSGNQRVLSKRGAVTADPRTNLLFVTDLEGRLAQIAALLASVDRPTRQV 346

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------FGGKFVSEGGD 244
            ++  I E      + +G + S+ G+S+  +    +                 F +    
Sbjct: 347 LIEARIVEGEHGFSRNLGVRLSMAGTSADGTTRGLSGGKDGLVADLSARPIAGFDAATAG 406

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++            L ALE       ++ P +       A    G +  Y+      G 
Sbjct: 407 LTLFAAGATRLLNIELSALEAEGRGEVVSSPRVVTADRMKAVVEQGTELPYQ-AKVGQGV 465

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P ++  GR+ L +  +V++  +G      P+   +   T VE+  
Sbjct: 466 SGVQFRRATLKLEVEPQIMPDGRVVLDL--DVAKDSVGEQTDAGPAINTKHVQTRVEVED 523

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GGT+ + G+   D +     +PLL KIP+LGALFR+     + +E+ +  TP +V+
Sbjct: 524 GGTVSIGGIYATDGRDDVTRVPLLGKIPVLGALFRHRAHRDQRSELAVFITPRVVQ 579


>gi|89899353|ref|YP_521824.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89344090|gb|ABD68293.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 702

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 104/303 (34%), Gaps = 29/303 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +      T        +      + V++ L+     QV ++  I EV  D   + G Q  
Sbjct: 348 QIQADVATNSLIITAPEPQYRQLRAVIDRLD-GRRAQVLVESLIVEVNADRAAEFGIQWQ 406

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
                +G               +                     +V+     +    + +
Sbjct: 407 GPLGKAGDGVIGLLGTNFGAAGKNIINLATGAGAVAPGAGLNFGAVQRTNGVYVLGFLAN 466

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------TGATSVTTHDY 312
            LE + +   L+ P L  +  + A    G    + T S +            T+V   D 
Sbjct: 467 FLETSGSGNVLSTPNLLTLDNEEAKIVIGENVPFVTGSYTSNNTSGASVNPFTTVERKDV 526

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
           G+ L   P +   G + + I  E S    G     + P+   R  ++TV +  G  +VL 
Sbjct: 527 GLTLKVKPQINEDGTVKMVIYQETSAVKAGTEKDANGPTTSKRTIESTVLVDDGSIVVLG 586

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           GLL+D     ++ +P L  +P+ G LF++    R +T + +   P +V+     D     
Sbjct: 587 GLLQDKYSGNQDKVPGLGDVPLFGNLFKSEARTRNKTNLMVFLRPVVVRDAHASD-QLSM 645

Query: 432 DHY 434
           D Y
Sbjct: 646 DRY 648


>gi|167721530|ref|ZP_02404766.1| type II/III secretion system protein [Burkholderia pseudomallei
           DM98]
 gi|167817709|ref|ZP_02449389.1| type II/III secretion system protein [Burkholderia pseudomallei 91]
          Length = 454

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 27  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 85

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 86  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 142

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 143 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 202

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 203 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 262

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 263 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 322

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 323 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 379

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 380 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 439

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 440 SELVVYITPTVV 451


>gi|324119774|gb|EGC13654.1| general secretion pathway protein D [Escherichia coli E1167]
          Length = 686

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 613 KRNLMVFIRPTILRDGMAAD 632


>gi|323496092|ref|ZP_08101152.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
 gi|323318836|gb|EGA71787.1| MSHA biogenesis protein MshL [Vibrio sinaloensis DSM 21326]
          Length = 544

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 114/318 (35%), Gaps = 42/318 (13%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +++     ++  G  +++  + +A  +    +  +    +     S++         + Q
Sbjct: 210 QLQAAVAQLIGSGSGQSVVVTPQASVITVRAYPDEVREVREFLGVSQQ-------RMQRQ 262

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
           V L+  I EV      Q G   S   SS+G + S                    G   + 
Sbjct: 263 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYSIGQGSIVKDGNGDILPAVLPGLDAIG 322

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    V+   SF+ VL  +     +  L+ P +TA + Q A    G    Y T  S
Sbjct: 323 TLLGGQTNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 382

Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           S          +    +T    G+ L  TP +   G + L +   V +    V       
Sbjct: 383 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGFGD 442

Query: 351 Y---------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                      +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+
Sbjct: 443 TRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDVPALGHLFRNT 502

Query: 402 RFNREETEIFIAATPFLV 419
               ++TE+ I   P +V
Sbjct: 503 TKLTQKTELVILLKPTVV 520


>gi|293412339|ref|ZP_06655062.1| general secretion pathway protein D [Escherichia coli B354]
 gi|293449309|ref|ZP_06663730.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291322399|gb|EFE61828.1| general secretion pathway protein D [Escherichia coli B088]
 gi|291469110|gb|EFF11601.1| general secretion pathway protein D [Escherichia coli B354]
          Length = 679

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|238025976|ref|YP_002910207.1| type II/III secretion system protein [Burkholderia glumae BGR1]
 gi|237875170|gb|ACR27503.1| Type II/III secretion system protein [Burkholderia glumae BGR1]
          Length = 649

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/471 (15%), Positives = 150/471 (31%), Gaps = 87/471 (18%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P +    P++ + A         +   ++IS+ L +  +  V                 
Sbjct: 174 GPPITMPAPVRLSAAPASVHGSHGLHGHRRISLDLQQAPLAAVFDAFAR----------- 222

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH------LEMTLRRFIAD 133
              + +++ L G+  G A + L     +   +  +                  +    A 
Sbjct: 223 --FTGQSIVLSGRVQGAATLRLRDVPWRDAFDALLDANGLAMARRGGVIWVAPVAELAAR 280

Query: 134 SNIRVEMVSDTVVLHGMVR------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
              R E  + T  L  +          +    A  L+     Q   ++  +  +    NL
Sbjct: 281 ERARFETHARTAALEPLASRAFVLRYPRAKDVARLLTGGAAGQRVLSRRGSVLADPRTNL 340

Query: 188 LNI------------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS----- 224
           L +                      QV ++  I E  R   +++G + ++  S+      
Sbjct: 341 LFVTDLDGRLAQIAALLAQLDRPSRQVLIEARIVEGERGFSRELGARLALRSSAWGGSRA 400

Query: 225 -------------------------GPSKSFAADFGG-----------KFVSEGGDFSVK 248
                                    G +       GG            F +     ++ 
Sbjct: 401 GAGAGGSGGSDGGAGGAAMPDSNPGGAATGIVGGPGGRLLDLSARPLAGFEAATAGLTLF 460

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   +  L ALE     R ++ P +       A    G +  Y+      G + V 
Sbjct: 461 VAGASRLLDLELSALEAQGRGRIVSSPRIVTADRAPALIEQGTELPYQ-AKVGLGVSGVQ 519

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
                + L   P +   G + L +  +V++  +G +    P+   +   T VE+ +GGT+
Sbjct: 520 FRRATLKLEVEPQITPEGHVVLDL--DVAKDSVGESTDAGPAIHTKHVRTRVEIENGGTV 577

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            + G+ + D +     +P+L KIP+LGALFR+    +   E+ +  TP +V
Sbjct: 578 SIGGIYESDRRDDVTRVPVLGKIPMLGALFRHRARRQRTAELVVYITPRVV 628


>gi|188535320|ref|YP_001909117.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
 gi|188030362|emb|CAO98253.1| Putative type II secretion system protein [Erwinia tasmaniensis
           Et1/99]
          Length = 384

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/322 (20%), Positives = 123/322 (38%), Gaps = 21/322 (6%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              +QML L       +      +   + +   R+     +V L     ++        L
Sbjct: 77  EAQEQMLPLFNRSLTLVHADAAAVNTSLQNERTRLMSARGSVTLDSRTNSLLLRDTEKAL 136

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           ++T               ++ +  L++    Q+ L   I  +  + L+++G    ++G +
Sbjct: 137 TQT---------------ERWIRQLDVPL-AQIELAAQIVTISEESLREMGVTWGMSGEA 180

Query: 224 SGPSKSFAADF---GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                   +            G        LD       L ALE       +A P L   
Sbjct: 181 QVSDALRTSQLRVELATGRPAGVAGFTLAKLDGRLLALELSALESEHQADIIASPRLFTS 240

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSE 338
             Q+AS   G +  Y+  + ++G+T++   +  + +  TP V   GRI   L I   V  
Sbjct: 241 HQQTASIKQGTEIPYEVSTGNSGSTTMEFKEAMLGMEVTPVVQPNGRILLKLHISQNVPG 300

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             +     ++ +   ++ DT V L  G T+ L G+ +   +  +  +P L  IP+LGALF
Sbjct: 301 RNMRSGENEVLTIDKQEIDTQVILKDGQTLALGGIFQQQSESGRTKVPWLGDIPLLGALF 360

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R+    ++  E+ I  TP L++
Sbjct: 361 RHDVRQQKRRELVIFITPRLIR 382


>gi|167847616|ref|ZP_02473124.1| type IV pilus secretin PilQ [Burkholderia pseudomallei B7210]
          Length = 460

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 33  SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 91

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 92  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 148

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 149 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 208

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 209 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 268

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 269 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 328

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 329 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 385

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 386 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 445

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 446 SELVVYITPTVV 457


>gi|51591323|emb|CAH22989.1| putative outer membrane secretin family protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 455

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 79/401 (19%), Positives = 152/401 (37%), Gaps = 19/401 (4%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 68  PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 123

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 124 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 179

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 180 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 235

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 236 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 294

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 295 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 354

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +   +Q
Sbjct: 355 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKKRQ 414

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               +PLL+ IP+LGA+FR     +   E+ I  TP L+  
Sbjct: 415 SVNKVPLLADIPLLGAMFRQDTQQQSRRELVIFITPKLISA 455


>gi|120600493|ref|YP_965067.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|120560586|gb|ABM26513.1| general secretion pathway protein D [Shewanella sp. W3-18-1]
 gi|319424804|gb|ADV52878.1| general secretion pathway protein D [Shewanella putrefaciens 200]
          Length = 705

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKAGGGTQFNNLGPTIGEIGAGI 394

Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
                                                + G    +   +    F  ++ A
Sbjct: 395 WQAQDKEGDTVTTLDGNGNPVTTKNPDTRGDVTLLAQALGKVNGMAWGVAMGDFGALIQA 454

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLH 317
           +   T    LA P++T +  Q ASF  G +         + ++S    +V   + GV L 
Sbjct: 455 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLK 514

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ ++
Sbjct: 515 VVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEE 572

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +Q+  + +P L  IP+LG LF++S   + +  + I   P +++
Sbjct: 573 VQESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 615


>gi|146328722|ref|YP_001209267.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
 gi|146232192|gb|ABQ13170.1| type IV fimbrial pore PilQ [Dichelobacter nodosus VCS1703A]
          Length = 734

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 42/255 (16%), Positives = 87/255 (34%), Gaps = 29/255 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE------------ 241
            QV +   +   + +  + +G +  ++   +  S            +             
Sbjct: 466 RQVLVDARLVITKDNFARDLGARFGLSFKGTAGSNPIVGSGNLTGTTFYAGMLEEKTIPI 525

Query: 242 ----------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                              + +  +      +  L AL+       ++ P +    G  A
Sbjct: 526 DNRLGVNLGIASPNVRAPSYGISILGSDVLVDLELQALQNEGRSEVISSPRVVTQDGNQA 585

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              SG +  Y       G+      +  + L  TP V    R+ + I+ +          
Sbjct: 586 KVMSGQEIPYS-TLDDKGSVQTDYKEALLSLEVTPRVTPNDRVNMEIEIKKDRVNWSEQV 644

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P+      +T VE+ +G TIVL G+ + +    +  +PLL  IP++G +F+N+    
Sbjct: 645 LGQPAIDKNLLNTKVEVANGETIVLGGIYEQEQSLSENKVPLLGDIPVVGNVFKNTNKKF 704

Query: 406 EETEIFIAATPFLVK 420
            + E+ I  TP ++ 
Sbjct: 705 TKNELLIFITPRVID 719


>gi|257485212|ref|ZP_05639253.1| general secretion pathway protein GspD [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 619

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 110/287 (38%), Gaps = 26/287 (9%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 267 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 325

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 326 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 385

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 386 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 445

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 446 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDTSILLDDGQIMVLGGL 505

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 506 LQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 552


>gi|88799076|ref|ZP_01114657.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88778303|gb|EAR09497.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 653

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 113/304 (37%), Gaps = 33/304 (10%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G           +   E                + +++ L+I   +QV ++  I EV  
Sbjct: 298 SGQNEPPSQPISVLADEEQNALIVRAEPSDMKELESIISQLDIP-REQVLIEAAIVEVTG 356

Query: 208 DILKQIGFQH--------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---- 249
           +    +G Q               S++   +G S    A   G+ +S+ G   +      
Sbjct: 357 NDTDTLGVQWATNPEVVQDGVPFLSVSSEVAGASVGNLAQSVGQGISQAGGSPLGALTSV 416

Query: 250 -----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                        +R  F   + ALE A+    L+ P++  +    A  T G    +KT 
Sbjct: 417 PAGTFMGLADPFGNRVDFGVAIQALESASNTNFLSTPSILTLDNSEAVITVGNSVPFKTG 476

Query: 299 SSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355
            S        +   D G  L   P +   G I L +   V      V+        + R+
Sbjct: 477 GSGDEDNPFTIERQDVGTTLTVIPHIQQNGTIRLEVDQIVESVDETVSYDASDVVTKKRQ 536

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V + SG TIVL GL++D + +L+  +P+L  IPI+G LF++    + +T + I   
Sbjct: 537 VTTQVLVNSGETIVLGGLIQDQVSELESRVPVLGYIPIIGHLFKSKSTLKTKTNLLIILK 596

Query: 416 PFLV 419
           P ++
Sbjct: 597 PSVI 600


>gi|300973519|ref|ZP_07172233.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|300410735|gb|EFJ94273.1| general secretion pathway protein D [Escherichia coli MS 45-1]
 gi|315291309|gb|EFU50669.1| general secretion pathway protein D [Escherichia coli MS 153-1]
          Length = 681

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 311 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 369

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 370 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 429

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 430 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 489

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 490 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 549

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 550 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 607

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 608 KRNLMVFIRPTILRDGMAAD 627


>gi|254281904|ref|ZP_04956872.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
 gi|219678107|gb|EED34456.1| fimbrial assembly protein PilQ, putative [gamma proteobacterium
           NOR51-B]
          Length = 729

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 117/302 (38%), Gaps = 31/302 (10%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G  R++  ++ +++  +   S    +  AN ++ + +         QV ++  I     
Sbjct: 423 EGASRSMVSARGSIKFDKRTNSIIITDTAANLAAVRDLIEKVDIPIRQVMIEARIVIADS 482

Query: 208 DILKQIGFQHSITGSSSGPSKSFA--------ADFGGKFVSEGG---------------- 243
           D+   +G +      + G     +        A    + ++  G                
Sbjct: 483 DLNNSLGVRWGGGYLNRGSDSITSVARGLDDVATLNTQAIAGAGLSYPANPLVDLGIEEG 542

Query: 244 ---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F++            L ALE +     +++P +       A+  SG +  Y+  ++
Sbjct: 543 GKSGFAIGFTSKDLFLTAELQALEASGQGEIVSQPKVITGDKLPATIKSGTEIPYQEGAA 602

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKAD 357
           S GAT+    +  + L  TP +   GRI L +      V E V   N G +PS    +  
Sbjct: 603 S-GATTTQFKEAVLKLEVTPNITPDGRILLDLVINQDSVGEEVGTPNGGRIPSIDTTELT 661

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +G T+VL G+ + D +     +P+L  IP LG LF+++     + E  I  TP 
Sbjct: 662 TQVLVGNGETVVLGGVFQSDERIDVSKVPVLGDIPYLGNLFKSTIKQSIKQETLIFITPR 721

Query: 418 LV 419
           ++
Sbjct: 722 IL 723


>gi|157376152|ref|YP_001474752.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
 gi|157318526|gb|ABV37624.1| Type II secretory pathway component PulD-like protein [Shewanella
           sediminis HAW-EB3]
          Length = 696

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/243 (31%), Positives = 119/243 (48%), Gaps = 14/243 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  ++I    QV L VTIAEV+     + GF+ ++   SSG          G     G
Sbjct: 439 PLVQRMDI-LPKQVLLSVTIAEVKLTGEFKRGFEFAL---SSGNFSGSTKGGLGLDEIVG 494

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G FS K   +    E +   +E  + +  L++P+L    G  A+   G +    + SSS+
Sbjct: 495 GTFSWKSGAN----EIIGKFVEENSQVNILSKPSLLVRDGTEANINVGDKIPVSSGSSSS 550

Query: 303 G-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
           G       ++T  + G+ L  TPTV + G + + I  E+S  V+G V  G  P++  R  
Sbjct: 551 GSGEVVTENITYRETGIKLTVTPTVNAQGVVIMEINQEISNQVVGPVGKGGNPTFFDRSI 610

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V   +G TI+L GL+ DD     +G+P L  IP++GALF +   N  +TE+ I  TP
Sbjct: 611 KTEVVADTGQTILLGGLISDDTTNSNKGVPYLKSIPLIGALFESDSKNNTKTELVIMVTP 670

Query: 417 FLV 419
            +V
Sbjct: 671 KIV 673


>gi|148555505|ref|YP_001263087.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
 gi|148500695|gb|ABQ68949.1| general secretion pathway protein D [Sphingomonas wittichii RW1]
          Length = 682

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 110/275 (40%), Gaps = 22/275 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
               A +  + ++  L++    QV ++  I E+  D  +Q+  Q  I  ++   +   A 
Sbjct: 369 GTPAAIAEVEPLIAQLDVRRP-QVLIEAAIVEISGDQAEQLAVQLGIGAAAINRASGGAT 427

Query: 233 DFGG------------KFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTL 277
            F                 + G   S  G  +     +F  +L A+ ++T    L+ P+L
Sbjct: 428 SFTSPGLPLQSILTAIGSPAAGAVLSNGGSANIRFGDNFSILLQAIGQSTRSNLLSTPSL 487

Query: 278 TAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           T +  + A    G    ++T S S         T++   D G+ L   P +     + L 
Sbjct: 488 TTLDNEPAEIVVGQNVPFRTGSFSTDGNTINPFTTIERQDVGLTLRVVPRIHQGNVVRLE 547

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  EVS     V          R   T+V    G TIVL GL+ DD  Q +  +P+L  I
Sbjct: 548 VAQEVSSLTNAVTGAADLITNRRSIQTSVLADDGQTIVLGGLISDDRTQTRSQVPILGDI 607

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PI G LFR+ + +  +  +F+   P +++     +
Sbjct: 608 PIAGELFRSRKESHVKRTLFVFLKPTILRDREAAN 642


>gi|1019923|gb|AAA79322.1| S-protein secretion D [Aeromonas hydrophila]
          Length = 737

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/451 (17%), Positives = 156/451 (34%), Gaps = 52/451 (11%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISI--------GLNKVIILQVPVDVQDVLVSDP- 74
             +  +K+A+ A+       +     ++I         L   ++  +  +  DV  S P 
Sbjct: 253 GPVELVKQASEAISLFDQPALKSSHSLAISPVYSDAEQLGNALMKVLQSEGYDVSDSPPF 312

Query: 75  -TKADVVVHSPRTMYLFGKNVGQAN-----VILIGHDGKQMLNLDI----LIERDIAHLE 124
                + +   + + +F       +     V ++  + ++ +   +    +     A + 
Sbjct: 313 GGVLVLKMKELQRIIVFAAEPRVLSHIRQWVEVLDRESQEKVENGLFIYQVRNTQAAAIA 372

Query: 125 MTLRRFIADSNIRVEMVS--DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
             L      +NI    V+  +TV   G          A   +    S + + +  +    
Sbjct: 373 TMLGALGYGANIPATGVNSTNTVTATGEQSGAGSLTAASPATSAPTSIAPKGEQGSVVVD 432

Query: 183 KVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
              N L   G                     V + V +AEV  +  + +G   S   +  
Sbjct: 433 GNRNALIFKGSGREWVTLRPLLDELDKPVPSVMIDVLLAEVSLNDKEGLGVDWSNIHTDL 492

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           G      +   G     G       +         L+A          + P L   SG+ 
Sbjct: 493 GAKDLIMSTANGI----GNSGLNLTLNSAGQTRAKLNAFYENKQAVIRSSPKLMVRSGEE 548

Query: 285 ASFTSGGQHLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           A    G +    T +S +           V     GV+L   PTV + G + L I  E+S
Sbjct: 549 ARIEVGNEIPVVTGTSQSTDNPDAPINKTVQYRKTGVILTIKPTVQASGVVDLTISQELS 608

Query: 338 EPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           E      + D   P+   RK +T + L  GG+++LAGL+     +   G+PLL  IP +G
Sbjct: 609 EQADTSTSTDALSPTIMNRKVNTALTLRDGGSVMLAGLISSTKGEGDTGVPLLGDIPWIG 668

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +LF++   ++  TE+ +   P++++      
Sbjct: 669 SLFKSKSNSQNRTELVVMIIPYVLRDFHEAQ 699


>gi|126454219|ref|YP_001067989.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242314362|ref|ZP_04813378.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
 gi|126227861|gb|ABN91401.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106a]
 gi|242137601|gb|EES24003.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 1106b]
          Length = 465

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 38  SSPPAADAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 96

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 97  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 153

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 154 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 213

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 214 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 273

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 274 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 333

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 334 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 390

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 391 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 450

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 451 SELVVYITPTVV 462


>gi|218708368|ref|YP_002415989.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
 gi|218321387|emb|CAV17337.1| MSHA biogenesis protein MshL [Vibrio splendidus LGP32]
          Length = 554

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 120/320 (37%), Gaps = 44/320 (13%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E+    ++  G  +++  + +A  +    +  +    +     S+K +         Q
Sbjct: 218 QLEVAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 270

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
           V L+  I EV      Q G   +   SS+G + +                    G   + 
Sbjct: 271 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTVGMGSIVKNAAGTIIPGTLPGMDPIG 330

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    V+   SFE VL  ++    +  L+ P +TA + Q A    G    Y T  S
Sbjct: 331 AALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGTDEYYVTELS 390

Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
           S+              +T    G+ L  TP +   G + L +   V E    V   ++ S
Sbjct: 391 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 450

Query: 351 Y-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                        +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFR
Sbjct: 451 TTGIVKLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 510

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    ++TE+ I   P +V
Sbjct: 511 NTSQLTQKTELVILLKPTIV 530


>gi|90580158|ref|ZP_01235965.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
 gi|90438460|gb|EAS63644.1| MSHA biogenesis protein MshL [Vibrio angustum S14]
          Length = 548

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 33/306 (10%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           V+ GM+ +       V      +S            +  + +     + QV L+  I EV
Sbjct: 220 VVSGMIGSGDGRNVMVSPQAGLISVRAFPNELREVKE-FLGMSQRRLKRQVVLEAKIMEV 278

Query: 206 RRDILKQIGFQHSITGSSSGPSK------------SFAADFGGKFVSEGGDFSVKGVLDR 253
             +   Q G   +   SS G +             + +   GG  +SE         +  
Sbjct: 279 TLNDSYQQGIDWNNLTSSIGGTGIIVNEMKDAANAAASILPGGNAISELLGGQTNIKITD 338

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303
            +F  V+  L     +  L+ P +TA + Q A    GG   + T  SS+           
Sbjct: 339 GNFSAVMSFLSTQGDLNVLSSPRVTAANNQKAVIKVGGDEYFVTDVSSSNVSGDNNNVSP 398

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS----------YRV 353
             S+T    G+ L  TP +   G + L +   V +        ++ +            +
Sbjct: 399 DVSLTPFFSGISLDVTPQIDDQGGVLLHVHPAVVDVQNEQKTIEVGTAKPMVLPLAKSTI 458

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ +   +G  +V+ GL+K  I      +P L  IP +G LFR+    +++TE+ I 
Sbjct: 459 RESDSIIHARTGDVVVIGGLMKSSINDQVSKVPFLGDIPGIGNLFRHINKVKKKTELVIL 518

Query: 414 ATPFLV 419
             P +V
Sbjct: 519 LKPTVV 524


>gi|167044898|gb|ABZ09565.1| putative bacterial type II and III secretion system protein
           [uncultured marine crenarchaeote HF4000_APKG8D22]
          Length = 637

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 96/250 (38%), Gaps = 18/250 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------- 234
           + +L+I+   QV ++  I E+ +   +++G    +     G                   
Sbjct: 388 IKILDISTP-QVLIEAKIVEISKTFSQELGISWGLVNPEPGFPTVTGNSTFDTQFLVDLR 446

Query: 235 -----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                    V+         +    +    L ALE++   R ++ P +T    + A   S
Sbjct: 447 PTVDIATGNVAGFDSLIQGFLPGNIALNVRLEALEKSGKGRVISSPRVTTADNKEARVLS 506

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G    Y+  S      S+   +  + L  TP V S   I + I    +       A  +P
Sbjct: 507 GRDIPYQVNSVEG--NSIQFVNAELSLTVTPHVTSDNSIYMTIDATKNAADFAQLAAGIP 564

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++  T V + +G T VLAG+ +    + K+ +P  SK+P++G LFR         E
Sbjct: 565 TITRKEMHTEVLVGNGETTVLAGIYESTSTENKKAVPWFSKLPLVGFLFRAFDDKDTINE 624

Query: 410 IFIAATPFLV 419
           + +  TP +V
Sbjct: 625 LLVFITPTIV 634


>gi|217424883|ref|ZP_03456380.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
 gi|217392339|gb|EEC32364.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 576]
          Length = 459

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 32  SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 90

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 91  RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 147

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 148 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 207

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 208 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 267

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 268 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 327

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 328 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 384

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 385 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 444

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 445 SELVVYITPTVV 456


>gi|237814100|ref|YP_002898551.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
 gi|237503013|gb|ACQ95331.1| type IV pilus secretin PilQ [Burkholderia pseudomallei MSHR346]
          Length = 552

 Score =  168 bits (426), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 76/432 (17%), Positives = 140/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
           +   A       + A     +    G  + ISI L +  +  V                 
Sbjct: 125 SSPPAAGAVSTASVAGTGTETGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSE 183

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 184 RVRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 240

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +   G V     +     L      Q   ++  +  +    NLL +       
Sbjct: 241 RAAQLEPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 300

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 301 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTL 360

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
              AA     F +     ++         +  L ALE     + ++ P +       A  
Sbjct: 361 AELAARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVV 420

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G     
Sbjct: 421 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETAS 477

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 478 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 537

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 538 SELVVYITPTVV 549


>gi|15836975|ref|NP_297663.1| fimbrial assembly protein [Xylella fastidiosa 9a5c]
 gi|9105203|gb|AAF83183.1|AE003888_16 fimbrial assembly protein [Xylella fastidiosa 9a5c]
          Length = 637

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
              DQV ++  I        + +G +  +  +S     +                     
Sbjct: 370 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 429

Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      S     +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 430 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 489

Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T    V+      +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 490 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 549

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 550 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 609

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
             ++++ E+ I  TP +++      
Sbjct: 610 GKDKQKAELLIFVTPKVLRVANATA 634


>gi|114561293|ref|YP_748806.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
 gi|114332586|gb|ABI69968.1| general secretion pathway protein D [Shewanella frigidimarina NCIMB
           400]
          Length = 710

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/283 (20%), Positives = 102/283 (36%), Gaps = 47/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I E+        G Q            +     G      
Sbjct: 339 ESVINQLDIR-RAQVLVEAIIVEIAEGDNVGFGVQWGSEAGGLTQFNNIGPTIGEVGAGV 397

Query: 236 -------GKFVSEGGDFSVKGVLDR--------------------------FSFETVLHA 262
                  G  V+ G                                      +F  ++ A
Sbjct: 398 WSARETDGTTVTVGNSDGGSTTTTNPTSDGDYTLIAQALGKVNGMAWGVTTGNFAALIQA 457

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLH 317
           +   T    LA P++T +  Q ASF  G +    T      ++     +V   + GV L 
Sbjct: 458 VSSDTNSNVLATPSITTLDNQEASFIVGDEVPIITGSTSSSNNDNPFQTVERKEVGVKLK 517

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ ++
Sbjct: 518 VVPQINEGSSVKLTIEQEVSGVNGNTGVD--ISFSTRRLTTTVMADSGQIVVLGGLINEE 575

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +Q+  + +P+L  IP +G LF++S   + +  + I   P +++
Sbjct: 576 VQESIQKVPILGDIPFIGHLFKSSSSKKTKKNLMIFIKPTIIR 618


>gi|223040615|ref|ZP_03610885.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
 gi|222878073|gb|EEF13184.1| type II and III secretion system protein [Campylobacter rectus
           RM3267]
          Length = 513

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/311 (20%), Positives = 112/311 (36%), Gaps = 35/311 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L+    +I      +  +   ++ +G        S   +  +    + QV + V+I 
Sbjct: 181 KAILNNTTESIVAPDPIINANAGLVTVTGTAAQLRRVSD-YIKDIQERLKKQVIIDVSIV 239

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----------- 252
            V        G   S          +       +  S GG  +     +           
Sbjct: 240 SVELANSYTKGIDWSKFSIGFKTGFANGIPLFSEQNSNGGSLTWSNRGNSFSRGFNRELS 299

Query: 253 -----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
                 F+ + VL+ LE     + ++ P +T ++ Q A  + G    Y+    S      
Sbjct: 300 LLSGFNFNLDGVLNFLETNGKTKVISSPKITTLNNQQALISVGDNVNYRVQEESQNNNSL 359

Query: 302 TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MP 349
            G T++T   Y    G++L+  P V    +I LRI   +S      +            P
Sbjct: 360 NGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLSSFKYNEDDVRQSTKIREIAP 419

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               +K  T V++ SG TIVL GL+     +    +P L  IP+ G  F++++ N   TE
Sbjct: 420 DTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLGDIPVFGNAFKSTKDNIRTTE 479

Query: 410 IFIAATPFLVK 420
           +    TP +V 
Sbjct: 480 LVFIITPRIVD 490


>gi|330501497|ref|YP_004378366.1| type 4 fimbrial biogenesis outer membrane protein PilQ [Pseudomonas
           mendocina NK-01]
 gi|328915783|gb|AEB56614.1| type 4 fimbrial biogenesis outer membrane protein PilQ precursor
           [Pseudomonas mendocina NK-01]
          Length = 704

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 48/307 (15%), Positives = 114/307 (37%), Gaps = 34/307 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVT 201
            +   G   T++D  R   + +   +            +  +++  L+I    QV ++  
Sbjct: 390 KLYEEGSSGTLKDDMRGSVIYDDRTNSLIVTLTQERIDELRRIVTQLDIPVR-QVMIEAR 448

Query: 202 IAEVRRDILKQIGFQHSIT------GSSSGPSKSFA----------------------AD 233
           I E   D  K +G +           ++ G + +                          
Sbjct: 449 IVEANVDYDKALGVRWGGNFWVGDKWNAWGKNGNLGVEENEDGGQVGRFPGDRQTPVNTP 508

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           F    V+      +  V +    +  L A+E++ +   +++P +     ++A    G + 
Sbjct: 509 FVDLGVAGTSGIGIGFVTNNTILDMQLSAMEKSGSGEVVSQPKVVTSDKETAKILKGTEV 568

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSY 351
            Y+  SSS   ++ +  +  + L  TP +    R+ + ++      +  +  + G +P+ 
Sbjct: 569 PYQESSSSGATST-SFKEAALSLEVTPQITPDNRVLMEVKVTKDAPDFSVTSSTGGIPAI 627

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
              + +  V +  G TIV+ G+  +   +  + +P L  +P +G +FR       + E+ 
Sbjct: 628 NKNEVNAKVLVADGETIVIGGVYSNTQSKSVDKVPFLGDLPFVGRVFRRDLVQDRKAELL 687

Query: 412 IAATPFL 418
           +  TP +
Sbjct: 688 VFLTPRI 694


>gi|237807143|ref|YP_002891583.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
 gi|237499404|gb|ACQ91997.1| general secretion pathway protein D [Tolumonas auensis DSM 9187]
          Length = 685

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 100/279 (35%), Gaps = 31/279 (11%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                     ++++  L+I    QV ++  I E++       G Q + T        +  
Sbjct: 342 TAQPDVMQELERIIAKLDIR-RAQVLVEAIIVEIQDGDTLNFGVQWANTNGGGTQFTATG 400

Query: 232 ADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                   +                       +       ++  ++ AL   T    LA 
Sbjct: 401 LPTTTVANAANEWRNDGELSSTSTAALSSFNGLVAGFYEGNWAGLVTALSSNTKSNILAT 460

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           P++  +  + A+F  G +    T S S+      ++V     G  L  TP +     + L
Sbjct: 461 PSIVTLDNKEAAFNVGQEVPVVTGSQSSTAGSVYSTVERKTVGTKLKVTPQINEGDSVLL 520

Query: 331 RIQTEVSEPVIGVNAGDMP---------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            ++ EVS      +              ++  R    +V + SG T+VL GLL ++  + 
Sbjct: 521 EVEQEVSSVASSSSTDSSSSSSNSSLGSTFNTRTVKNSVLVKSGETVVLGGLLSNNTSES 580

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              +PLL  IPILG LFR +  +  +  + +   P +++
Sbjct: 581 VYKVPLLGDIPILGYLFRYNGTSTTKQNLMVFIHPTILR 619


>gi|163857177|ref|YP_001631475.1| general secretion pathway protein D [Bordetella petrii DSM 12804]
 gi|163260905|emb|CAP43207.1| general secretion pathway protein D [Bordetella petrii]
          Length = 862

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/273 (23%), Positives = 104/273 (38%), Gaps = 30/273 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSE 241
           +V++ L+     QV ++  I EV ++   + G Q  +  GS  G       + GG  +  
Sbjct: 408 EVIDQLDQR-RAQVLVESLIVEVSQEKAAEFGIQWMTGAGSLDGSGFIGGTNLGGSGIGS 466

Query: 242 GGDFSVKGVLDRFSFETVL-------------------HALERATAIRTLAEPTLTAISG 282
            G  +             L                    AL+ +     L+ P L  +  
Sbjct: 467 AGTGATTLDALGRGLTLGLVKGTVDVLGNQVINLNVLARALQNSGEANILSTPNLLTLDN 526

Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           + AS   G    + T          S+    ++   D G+ L+  P +   G + L I  
Sbjct: 527 EPASILVGKTVPFVTGQYVTSGSAGSNNPFQTIEREDIGLKLNIRPQISEGGAVKLDIYQ 586

Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS      ++         R  DT+V +  G  IVL GLL+D +      +P LS IP+
Sbjct: 587 EVSSIDEASSSETTGLVTNKRAIDTSVLVDDGQIIVLGGLLEDRVTSTTSAVPGLSSIPL 646

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LGALFR  +  R ++ + +   PF+V+      
Sbjct: 647 LGALFRYDKRQRTKSNLMVFLRPFVVRDARDSA 679


>gi|114331780|ref|YP_748002.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
 gi|114308794|gb|ABI60037.1| type IV pilus secretin PilQ [Nitrosomonas eutropha C91]
          Length = 720

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 104/264 (39%), Gaps = 39/264 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKF 238
               QV ++  I E      + +G +  +  ++               +   +++     
Sbjct: 448 TQVRQVMIETRIVEATDTFSRNLGARFGVQNATRIGSQTNGRRLGISGNLGNSSELAAGT 507

Query: 239 VSEGGD-----------------------FSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +S  G                         S+  + +       L ALE  +  R +A P
Sbjct: 508 ISPSGGDNLNVNLPAAALAGVAGGPAALGLSLIKINNGTLINLELSALESDSQGRIIASP 567

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L   +   AS   G +  ++T+S +     +      + L  TP +     I +++  +
Sbjct: 568 RLVTANRVEASIEQGTEIPFQTISVT--RPQIQFKKAVLGLKVTPQITPDDNIIMKL--Q 623

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++   G +    P+   ++  T V + +GGT+V+ G+ +   ++ +  IPLL  +P+LG
Sbjct: 624 VNQDTRGESTPAGPAIDTKQIVTEVLVENGGTVVIGGIFEQVEKRDRNQIPLLGDVPLLG 683

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF+N+    ++ E+ I  TP ++
Sbjct: 684 NLFKNTAKRDDKRELLIFVTPRIL 707


>gi|163849487|ref|YP_001637530.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
 gi|163661092|gb|ABY28459.1| general secretion pathway protein D [Methylobacterium extorquens
           PA1]
          Length = 794

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 67/291 (23%), Positives = 120/291 (41%), Gaps = 21/291 (7%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
            + A+ +     + S       +   K++ +L    A   QV L+  IAEV  +   Q G
Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522

Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
            Q  +  S           +   ++  +        +  G      +L+   F  VL+AL
Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 582

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
           +  T +  ++ P +T +  ++A    G Q      S  +           +   D GV+L
Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
             TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G+++
Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  Q   E +PLL  +PI+G  FRN    R  TE+ +   P +++     D
Sbjct: 703 EKAQITNESVPLLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753


>gi|121607022|ref|YP_994829.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
 gi|121551662|gb|ABM55811.1| type IV pilus secretin PilQ [Verminephrobacter eiseniae EF01-2]
          Length = 712

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 127/350 (36%), Gaps = 46/350 (13%)

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
           + +  L     +        +    +     G   T   S+R   ++E   +Q      A
Sbjct: 366 QRLEPLRTQAYQLNYAKASDILTQLNASGGAGGSSTRFLSERGSAIAEPRTNQLFVTDTA 425

Query: 178 NSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------- 221
           +   +  +++  L++A   QV ++  I E R    + +G +   T               
Sbjct: 426 SKQEEVRQLLARLDVAVR-QVMIEARIVEARDSFGRSLGVRLGSTDLSASRKGTGGYGIG 484

Query: 222 ---------------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--------- 257
                           +SG + S A D GG FV+     S    +  F+           
Sbjct: 485 GNKRVAYGTSYSDAVKASGANGSTAPDTGGNFVNLPASLSSVNTVGSFALSIFNAATNKF 544

Query: 258 --TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               L A+E     R ++ P +       A    G ++ Y  V++  GAT++      + 
Sbjct: 545 LTLELSAMEADGKGRIVSSPRIITADQTKALIEQGTEYPY-AVTAPNGATTLAFKKAVLK 603

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  +P +   G I L    +VS+   G       +   +   T + + +GGT+V+ G+ +
Sbjct: 604 LEVSPQITPEGNIILD--LDVSKDSRGETTSQGVAIDTKHIKTQILIENGGTVVIGGIFE 661

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +    +  IP L  +P++G LF++      + E+ I  TP ++     +
Sbjct: 662 MEETSQENKIPFLGDVPVVGNLFKSKTKETTKREMLIFITPKVIADSGPK 711


>gi|293406579|ref|ZP_06650505.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
 gi|291426585|gb|EFE99617.1| hypothetical protein ECGG_01885 [Escherichia coli FVEC1412]
          Length = 679

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 309 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 367

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 368 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 427

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 428 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 487

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 488 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 547

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 548 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 605

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 606 KRNLMVFIRPTILRDGMAAD 625


>gi|167587730|ref|ZP_02380118.1| type IV pilus secretin PilQ [Burkholderia ubonensis Bu]
          Length = 499

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 107/295 (36%), Gaps = 34/295 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +Q    L      Q   ++   +++    N L +                      QV 
Sbjct: 175 RAQDVQRLLTGAAGQRLLSKRGAAAADSRTNQLFVTDLAPRIAQIAGLIDAIDRPSRQVR 234

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------------FAADFGGKFVSEGGD 244
           ++  I E  +   + +G + ++       +                AA   G F +    
Sbjct: 235 IEARIVEGEQGFSRNLGARLALRARERAAAADGAAFAAGARNALDLAARPLGGFDAATAG 294

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 295 FTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRAKAIVEQGAELPYQ-AKVGNGV 353

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+  
Sbjct: 354 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTKHVQTRVEVED 411

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ +   +     +PLL KIPILGALFR+     + +E+ +  TP +V
Sbjct: 412 GGTVAIGGIYEQLRRDDVTRVPLLGKIPILGALFRHRAQRDQRSELVVFITPTVV 466


>gi|34496284|ref|NP_900499.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
 gi|34102137|gb|AAQ58504.1| type 4 fimbrial biogenesis protein PilQ [Chromobacterium violaceum
           ATCC 12472]
          Length = 697

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 54/258 (20%), Positives = 94/258 (36%), Gaps = 26/258 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------- 231
            QV ++  I E   +  + +G + +          S                        
Sbjct: 440 KQVLIEARIVEATDNWERDLGIKLTYDRMDPKGIISGNPLGTNVNNVTNLNNNQPYVIQT 499

Query: 232 --ADFGGKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             A       +  G  S    +         L A++     R ++ P +     Q AS  
Sbjct: 500 TPAGVNLPIATPYGTLSALYNVGHSVILGLELQAMQAEDKGRIISSPRVMTADRQEASIE 559

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G +  Y+   SS+GATSV+     + L+  P +     + + I                
Sbjct: 560 QGTEIPYQEA-SSSGATSVSFKKAVLRLNVKPQITPDNHVIMDITVNKDSANFEKTVNGT 618

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS    K  T V + +GGT+VL G+ +  +  +   +P L  IP+LGALFR+S+   + +
Sbjct: 619 PSLSTEKIITQVLVENGGTVVLGGIYQQQLNDVINKVPFLGDIPLLGALFRSSQKIDKRS 678

Query: 409 EIFIAATPFLVKPVAMRD 426
           E+ I  TP ++  +    
Sbjct: 679 ELLIFITPKVINDLVAES 696


>gi|120612787|ref|YP_972465.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120591251|gb|ABM34691.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 829

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 62/248 (25%), Positives = 104/248 (41%), Gaps = 20/248 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF-----------VSE 241
             QV ++ +I EV  D   Q G Q +   +                              
Sbjct: 535 PTQVLIEASIVEVTLDDTLQYGLQWAFNNAGPSNLNGAGQLLTNGPSDKTPIGSSIPTPT 594

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS-- 299
              FS        S   VL+AL     ++ ++ P+L  +   +A  + G Q   KT S  
Sbjct: 595 SSGFSYALSNSLGSVRVVLNALATKRLLKVISSPSLMVLDNHTAMMSVGNQQPVKTGSLI 654

Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYR 352
                 ++ A ++   D GV L  TP+V +   + ++I   V++ V   +      P ++
Sbjct: 655 TSVSGGNSVADTIQYRDTGVSLAVTPSVNAGNLVTMQIDQAVTDAVADNSGSISLQPVFQ 714

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+  + V + SG  IVL GL++D     K G+PLL  IP++G+LF N+      TE+ +
Sbjct: 715 QRQITSKVAVRSGEAIVLGGLIRDTSNSSKSGVPLLQDIPLVGSLFSNNGKTGNRTELLV 774

Query: 413 AATPFLVK 420
             TP +V+
Sbjct: 775 VITPKVVR 782


>gi|330831366|ref|YP_004394318.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
 gi|328806502|gb|AEB51701.1| MSHA biogenesis protein MshL [Aeromonas veronii B565]
          Length = 557

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/258 (23%), Positives = 101/258 (39%), Gaps = 31/258 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------FGGKFVSEGG 243
           + QV L+  I EV  +   + G   S   +S   +K                   +    
Sbjct: 276 KRQVVLEARIIEVALNEGYEQGVDWSGLSASWDGNKGITGGQSLANTQLPSTPNQIFSAL 335

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST- 302
                  +   +F   ++ L+    + TL+ P +TA + Q A    G    Y T +S+T 
Sbjct: 336 GGGAGFKISDGNFNVAVNLLKTQGDVNTLSSPRVTATNNQKAVIKVGTDEYYVTNASTTI 395

Query: 303 ----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY- 351
                         +T    G+ L  TP +   G++ L I   V +        DM +  
Sbjct: 396 TTTSTGTDKTPNVELTPFFSGIALDVTPQIDEEGKVLLHIHPSVIDTEEQNKVIDMGTSG 455

Query: 352 ----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                      +R++DT V+  +G  IV+ GL+K D Q++   +PLL  IP +G  F N 
Sbjct: 456 GKLQLPLAKSSIRESDTVVQANNGDIIVIGGLMKTDKQEIVSKVPLLGDIPWVGEAFTNR 515

Query: 402 RFNREETEIFIAATPFLV 419
           R + ++ E+ I   P +V
Sbjct: 516 RESTKKVELVIMLKPTVV 533


>gi|88866562|gb|ABD57336.1| TapQ [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 730

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 114/303 (37%), Gaps = 30/303 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +L     +   ++ AV + E       ++     S+ K M  +      QV ++  +  +
Sbjct: 425 LLSPRTPSCFSARGAVSVDERTNVLVVKDTADVISNIKPMLDILDIPVKQVVIEARMVTI 484

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------------DFGGKF 238
                + +G +  +T +    + +  +                           +     
Sbjct: 485 DDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGVEDRMNVNLPVTN 544

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +    F V  + D    +  L ALE+ +    +A P +T  + + A    G +  Y   
Sbjct: 545 AAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQGTEIPYVES 604

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKA 356
            SS+GATSVT     + L  TP +    R+ L +          +    GD  S   +  
Sbjct: 605 -SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDAVSINAQSI 663

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G T+VL G+ +  I+     +PLL  IP LG LFR +    ++ E+ I  TP
Sbjct: 664 TTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKRELLIFVTP 723

Query: 417 FLV 419
            +V
Sbjct: 724 KIV 726


>gi|37681131|ref|NP_935740.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
 gi|37199882|dbj|BAC95711.1| MSHA biogenesis protein MshL [Vibrio vulnificus YJ016]
          Length = 547

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++  G  +++  + +A  ++        R        ++ + +     + QV L+  I 
Sbjct: 226 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 279

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
           EV      Q G   S   +S G S S   +  G  V  G               +   SF
Sbjct: 280 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 339

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
           E VL  +     +  L+ P +TA + Q A    G    Y T  SS              +
Sbjct: 340 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 399

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP +   G + L +   V E        ++               +R+
Sbjct: 400 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 459

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K +  +    +P    IP LG LFRN+    ++TE+ I   
Sbjct: 460 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 519

Query: 416 PFLV 419
           P +V
Sbjct: 520 PTVV 523


>gi|254300620|ref|ZP_04968065.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
 gi|157810585|gb|EDO87755.1| type IV pilus secretin PilQ [Burkholderia pseudomallei 406e]
          Length = 455

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 146/428 (34%), Gaps = 38/428 (8%)

Query: 24  AKLPPIKEANAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +       + A+V      +  G  + ISI L +  +  V                  V 
Sbjct: 31  SPPAAGAVSTASVAGTGTGDPSGDNRPISINLQQASLAAVFDAFAR-FTGLNIVVSERVR 89

Query: 83  SPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
              ++ L       A   L+   G        ++    +A L    R+   D++ RV  +
Sbjct: 90  GTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF-DAHARVAQL 148

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA---------- 191
            + +   G V     +     L      Q   ++  +  +    NLL +           
Sbjct: 149 -EPLASRGFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLAQIA 207

Query: 192 --------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFA 231
                      QV ++  I E  R   + +G +              I    +G     A
Sbjct: 208 DLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGERATGIVAGRNGTLAELA 267

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           A     F +     ++         +  L ALE     + ++ P +       A    G 
Sbjct: 268 ARPISGFDAATAGLTLFAARASRLLDVELSALEAEGRGQIVSSPRVVTADRTKAVVEQGA 327

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y+      G + V      + L   P +   GR+ L +  +V++  +G      P+ 
Sbjct: 328 ELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAI 384

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ 
Sbjct: 385 HTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELV 444

Query: 412 IAATPFLV 419
           +  TP +V
Sbjct: 445 VYITPTVV 452


>gi|117918609|ref|YP_867801.1| general secretion pathway protein D [Shewanella sp. ANA-3]
 gi|117610941|gb|ABK46395.1| general secretion pathway protein D [Shewanella sp. ANA-3]
          Length = 702

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 106/281 (37%), Gaps = 45/281 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 336 ESVINQLDIR-RAQVLVEAIIVEVAEGDNVGFGVQWAAKADGGTQFNNLGPTIGEIGAGI 394

Query: 236 -------GKFVSEGGDFSVKG------------------------VLDRFSFETVLHALE 264
                  G +++      V G                         +    F  ++ A+ 
Sbjct: 395 WQAQDKEGTYITNPSTGEVIGKNPDTKGDVTLLAQALGKVNGMAWGVAMGDFGALVQAVS 454

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVTTHDYGVVLHFT 319
             T    LA P++T +  Q ASF  G +         + ++S    +V   + GV L   
Sbjct: 455 ADTNSNVLATPSITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVERKEVGVKLKVV 514

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +     + L I+ EVS            S+  R+  TTV   SG  +VL GL+ +++Q
Sbjct: 515 PQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIVVLGGLINEEVQ 572

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  + +P L  IP+LG LF++S   + +  + I   P +++
Sbjct: 573 ESVQKVPFLGDIPVLGHLFKSSSSKKTKKNLMIFIKPTIIR 613


>gi|71276554|ref|ZP_00652828.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71901093|ref|ZP_00683201.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|170730937|ref|YP_001776370.1| fimbrial assembly protein [Xylella fastidiosa M12]
 gi|71162625|gb|EAO12353.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|71729136|gb|EAO31259.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|167965730|gb|ACA12740.1| fimbrial assembly protein [Xylella fastidiosa M12]
          Length = 630

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
              DQV ++  I        + +G +  +  +S     +                     
Sbjct: 363 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTTADSSTSATRGLN 422

Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      S     +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 423 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 482

Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T    V+      +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 483 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 542

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 543 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 602

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
             ++++ E+ I  TP +++      
Sbjct: 603 GKDKQKAELLIFVTPKVLRVANATA 627


>gi|308274907|emb|CBX31506.1| hypothetical protein N47_E50180 [uncultured Desulfobacterium sp.]
          Length = 718

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/454 (17%), Positives = 153/454 (33%), Gaps = 59/454 (12%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV--- 80
                    N  +I  S + I K   I   +++  I ++P  V     S  T A +V   
Sbjct: 159 GLASVFGPGNMLLIIDSGINIRKIASIIESIDQPYIGEMPEIVYLKYASAETVAKMVNEN 218

Query: 81  VHSPRTMYLFGKNVGQANVILIGHD-GKQMLNLDILIERDIAHLEMTLRRFIADS----N 135
           ++  +   L     G     +        +L  D  I+  +      L     ++    N
Sbjct: 219 INRGQREVLSQAMPGNTGKAVAEQRLNAVLLFGDKSIKESMHSFISLLDVRSPEAHGMIN 278

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----- 190
           +     +D V L  +++ +  + ++ + +   +S          ++ K  N L +     
Sbjct: 279 VYFMENADAVELAKVLQDLVKAGQSKQPAAA-MSVFETAGGIAITADKASNALVVVATPA 337

Query: 191 -------------AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFA 231
                            QV ++  IAEV  D L ++G +     + +G         +  
Sbjct: 338 DYQNLQQIIKKLDKRRKQVFVEAMIAEVSIDKLLELGSKWRAAVTRNGEPIFVGGVGTVD 397

Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
           A      +S     ++ G+ + F                     +    +   A+  L+ 
Sbjct: 398 AATVNSILSGMTGLTLGGMSNYFTVPQTFVAGGTSDIKVPGITALFSMSDFKDAVNVLST 457

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVLSPGRI 328
           P +       A    G              T+      +   D G++L   P +     +
Sbjct: 458 PQILTSDNMEAEILVGENIPLILNRERDVTTTSTVLTSIERKDVGILLKIKPQINEGEYV 517

Query: 329 GLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            L I  E+S    G         P+   R   T+V +    T+V+ GL+++  ++    I
Sbjct: 518 KLDIYQEISAQKAGSENVITSIGPTMTKRSTKTSVAVKDKQTVVIGGLMQERDEESITKI 577

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  IP LG LF+    +R +T + +  TP+++
Sbjct: 578 PLLGDIPGLGWLFKYRSISRAKTNLLVFLTPYII 611


>gi|86149355|ref|ZP_01067586.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88596641|ref|ZP_01099878.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218563075|ref|YP_002344854.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|85840137|gb|EAQ57395.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88191482|gb|EAQ95454.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112360781|emb|CAL35581.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni NCTC 11168]
 gi|284926681|gb|ADC29033.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927422|gb|EFV06760.1| Pilus biogenesis protein MshL [Campylobacter jejuni subsp. jejuni
           DFVF1099]
 gi|315929011|gb|EFV08254.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 472

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 371

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 372 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 431

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 432 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 463


>gi|229589906|ref|YP_002872025.1| putative type II secretion pathway protein D [Pseudomonas
           fluorescens SBW25]
 gi|229361772|emb|CAY48654.1| putative type II secretion pathway protein D precursor [Pseudomonas
           fluorescens SBW25]
          Length = 770

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 60/270 (22%), Positives = 104/270 (38%), Gaps = 28/270 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------SSSGPSK 228
           +V+++L+     QV ++  I EV  D   + G Q                   S    + 
Sbjct: 441 EVIDMLDQR-RAQVVIESLIVEVGEDDATEFGVQWQAGNLAGKGGFGGVNLGGSGVNSTP 499

Query: 229 SFAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           +          G       G   + G+      + +  AL+       L+ P L  +  +
Sbjct: 500 TSKTSIDVLPKGLNVGLVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 559

Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS   G    + T         +S+    +V   + G+ L+  P +   G + L I  E
Sbjct: 560 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 619

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS      +         R  DT++ L  G  +VL GLL+D   Q  + +P LS IP LG
Sbjct: 620 VSTVDTRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSDIPGLG 679

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           ALFRN + +  +T + +   P++++     
Sbjct: 680 ALFRNEKRSVNKTNLMVFLRPYIIRDSGAG 709


>gi|239907473|ref|YP_002954214.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
 gi|239797339|dbj|BAH76328.1| general secretion pathway protein D precursor [Desulfovibrio
           magneticus RS-1]
          Length = 685

 Score =  168 bits (425), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 97/272 (35%), Gaps = 33/272 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            +V+  L+ A   QV ++  I EV  D     G   ++    SG              + 
Sbjct: 372 DQVVKKLD-APRKQVYVEALIMEVSTDKSVSFGVNLNVANKQSGLGDGKYGGLLFASSNP 430

Query: 242 GGDFSVKGVLDRF-----------------------SFETVLHALERATAIRTLAEPTLT 278
            G  S+      F                       + + +++A +   +   +A P L 
Sbjct: 431 AGYESLYNSSGAFVPPAGGSLGGLAFPVKIGEVIYSNLQAMINASKSDNSFNIIATPQLM 490

Query: 279 AISGQSASFTSGGQHLYKTVSSST------GATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + A+ T      Y T                   D G  L  TP +     I L++
Sbjct: 491 TLDNEEATITVAENRPYLTSQDVGQSTTDRPYQRFDYKDVGTTLKVTPQINEGDSIKLKV 550

Query: 333 QTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + E S     V        P+ R R  +TT+   +G TIVL+GL+     +    +P L 
Sbjct: 551 KQETSRIDETVTKETGALQPTTRKRVTETTIMCRNGETIVLSGLIGKSRAEGNSKVPGLG 610

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P++G LF+N     E T +++  TP +  P
Sbjct: 611 DVPVVGWLFKNKSVADERTNLYVFITPRITAP 642


>gi|86147852|ref|ZP_01066158.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
 gi|85834379|gb|EAQ52531.1| MSHA biogenesis protein MshL [Vibrio sp. MED222]
          Length = 562

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 116/320 (36%), Gaps = 44/320 (13%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E     ++  G  +++  + +A  +    +  +    +     S+K +         Q
Sbjct: 227 QLEAAVAHLIGSGDGQSVVVTPQASVITVRAYPDEIREVREFLGISQKRLQR-------Q 279

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
           V L+  I EV      Q G   +   SS+G + +                    G   + 
Sbjct: 280 VILEAKIMEVTLSDGYQQGINWTKMFSSNGTNYTLGMGSIVKNAAGTIIPGKLPGMDPIG 339

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    V+   SFE VL  ++    +  L+ P +TA + Q A    G    + T  S
Sbjct: 340 TALGGQSNLVVSGGSFEAVLSFMDTQGDLNVLSSPRVTAANNQKAVIKVGIDKYFVTNLS 399

Query: 301 ST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVI 341
           S+              +T    G+ L  TP +   G + L +   V              
Sbjct: 400 SSVGSGDNANVAPEVELTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEVKELNLGS 459

Query: 342 GVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 +P     +R++D+ +    G  +V+ GL+K +   +   +P L  IP LG LFR
Sbjct: 460 TTGVVTLPLAKSSIRESDSVIRAQDGDVVVIGGLMKSNTSDMTSKVPFLGDIPALGHLFR 519

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    ++TE+ I   P +V
Sbjct: 520 NTSQLTQKTELVILLKPTVV 539


>gi|319761377|ref|YP_004125314.1| general secretion pathway protein d [Alicycliphilus denitrificans
           BC]
 gi|317115938|gb|ADU98426.1| general secretion pathway protein D [Alicycliphilus denitrificans
           BC]
          Length = 767

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 126/329 (38%), Gaps = 25/329 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G VR + D +R   L     ++  R + A     K           QV ++ +I EV 
Sbjct: 449 LEGNVRVVADDKRNALLIRAPRAEYRRIEQALRELDK--------APTQVLIEASIVEVS 500

Query: 207 RDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                + G +  I  S SG          +  G    +   FS   +    +    L+AL
Sbjct: 501 LTGNLKYGVEWFIQNSLSGDRTGQALLNMNNSGSIGPQQPGFSYTILNKAGAVRATLNAL 560

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFT 319
              + +R L+ P++  +   SA+   G Q   K  ++ T    VT      D GV+L  T
Sbjct: 561 AANSQLRVLSNPSVLVLDNHSATILVGKQQPIKQSTTVTTGNLVTESIVYKDTGVMLSVT 620

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P+V + G + L I  +V++      A    S+  R+  + V + SG  IVL G++ ++  
Sbjct: 621 PSVNAGGLVTLDINQQVTDVGDVDAATGQRSFLTRQIQSRVAVRSGDPIVLGGVMSENQS 680

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
               G+P L  +P+LGALF         TE+ +  TP           +  DD       
Sbjct: 681 TGNSGVPGLRDVPVLGALFSTDTTTSARTELLVVLTPR----------ALEDDDALRAAS 730

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
           A+     R   + G    +        GA
Sbjct: 731 AEMRDRMRTMSLQGLLVPASAAKPPEGGA 759


>gi|114778365|ref|ZP_01453212.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114551328|gb|EAU53885.1| probable pilQ; fimbrial type-4 assembly signal peptide protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 793

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 91/241 (37%), Gaps = 17/241 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
            QV ++  I E      + +G +   T +S+G   +              D         
Sbjct: 548 QQVMVEARIVEATDTFSRDLGVKWGGTLNSNGGGYTHTVTGAASAPQNVVDLGAAVKAGA 607

Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                 ++  + +  +    L A E    I+ ++ P +   + Q A      Q  ++  +
Sbjct: 608 GGAIGYTLGTLNNALNLNLELSAAEAEGQIKVVSSPRVFTSNLQEALIEQDQQIPFQVTT 667

Query: 300 SSTGAT-SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +ST    S       + L  TP + +  RI +++   V++     N    P+   ++  T
Sbjct: 668 ASTPPVVSYQLKSAKLTLKVTPQITADKRIIMQLV--VNKDTPVANTVGPPTIDKKQIMT 725

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + + +G T+VL G+          G+P L  IP +G  F+  +  R   E+ I  TP +
Sbjct: 726 KLLVKNGETMVLGGIYTQTTSDQVNGVPGLQNIPFIGNFFKRKQKVRNRNELLIFITPTI 785

Query: 419 V 419
           +
Sbjct: 786 I 786


>gi|152986624|ref|YP_001348780.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150961782|gb|ABR83807.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 758

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/457 (19%), Positives = 166/457 (36%), Gaps = 47/457 (10%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
           ++T    +   +    P+   L  +  ANA +++     I + + I   L++       +
Sbjct: 136 RQTSVVELIPMIRPLVPAHGHLAAVPSANALIVSDRRANIERIESIVRSLDQAGEHDYSI 195

Query: 65  -DVQDVLVSD-PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            D++   V++     D  V         GKN     V+      + +L         +  
Sbjct: 196 YDLRHAWVAEIAEVLDQSVTPAA-----GKNAATVQVLADSRSNRLVLLGPPQARARLLR 250

Query: 123 LEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR--------------AVELSE 165
           L  +L       A+S +      D   +   +  I +S R              A+  ++
Sbjct: 251 LAQSLDVPSSRSANSRVIRLRHGDAKTIASTLGEIGESLREGGDQGQRRSGKRGALVRAD 310

Query: 166 TFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
             L+              ++++  L++    Q+ ++  I E+  ++ + +G Q ++ G  
Sbjct: 311 ESLNALVILADPQEVGLFEEIVRQLDVP-RAQLLVEAAIVELTGELNEALGVQWAMRGGH 369

Query: 224 SGPSKSFAADFGGKFVSEGG----------DFSVKGVLDRFSFETVLHALERATAIRTLA 273
           +    SFA          G                  L    F  ++ AL R +    L+
Sbjct: 370 AVGGTSFAGSGLSIGTLLGALQSGKPPAELPDGAIVGLGSRDFGALITALTRNSNSNLLS 429

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPG 326
            P+L  +  Q A    G    ++T S       SS   T+V   D GV L  TP +    
Sbjct: 430 TPSLLTLDNQKAEILVGQNVPFQTGSYTTNSEGSSNPFTTVERKDIGVTLKVTPHIGDDR 489

Query: 327 RIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            + L I+ E+S                   R   +TV    G  IVL GL++DD+ +   
Sbjct: 490 MLRLEIEQEISSIAPAATLAAKTVDLVTNKRSIKSTVLADDGQVIVLGGLIQDDVVRSDS 549

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +PLL  IP +G LFR++R  R +  + +   P +V+
Sbjct: 550 RVPLLGDIPGVGRLFRSTRDTRVKRNLMVFLRPSIVR 586


>gi|293604906|ref|ZP_06687303.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292816734|gb|EFF75818.1| general secretion pathway protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 791

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 58/273 (21%), Positives = 103/273 (37%), Gaps = 30/273 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---AADFGGKFV 239
           +V++ L+     QV ++  I EV      + G Q      +   + +      + GG  +
Sbjct: 415 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSNGTSFIGGTNLGGSGI 473

Query: 240 SEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISG 282
           +  G  S+  +                     +   +  A++       L+ P L  +  
Sbjct: 474 TGNGPTSIDALGSGLSLGVVKGTVDVLGNQVINLGVLARAMQNTGEANILSTPNLLTLDN 533

Query: 283 QSASFTSGGQHLYKTVS--------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           QSAS   G    + T          SS    ++   D G+ L+  P +   G + L I  
Sbjct: 534 QSASILVGKTVPFVTGQYVTSGSNGSSNPFQTIEREDVGLKLNIRPQISEGGAVKLDIYQ 593

Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           EVS      +          R  DT+V +  G  IVL GLL+D++      +P L  +P+
Sbjct: 594 EVSSIDESRSTPTTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNSVPGLGSLPV 653

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +G+LFR     R +T + +   P++V+      
Sbjct: 654 IGSLFRYDTRKRTKTNLMVFLRPYVVRDANRSA 686


>gi|71908829|ref|YP_286416.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71848450|gb|AAZ47946.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 667

 Score =  167 bits (424), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 75/438 (17%), Positives = 160/438 (36%), Gaps = 59/438 (13%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVL--VS 72
           +    P   E   A +      + +   ++   +K I   + V        ++D+L  + 
Sbjct: 180 AALAKPVTLEFRDASLKSVFEVLSRASGLNFVFDKDIKGDIKVTLFVRNSPLEDILRLIL 239

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
              + D    +  +  ++     ++         + ++    L   D+   +  ++    
Sbjct: 240 TTNQLDKRQLNDNSFLIYPNTPAKSK-----EYQELVVRNFYLANTDVKQAQNLVKTVAK 294

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
             ++  +   + +++            A+ L                  +++++ L++A 
Sbjct: 295 SKDVFADEKLNLLIVKDTP-------DAMRLV-----------------ERLIDSLDLAE 330

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVS 240
            + V L+V + EV R  L Q G                 T +++    +     GG   +
Sbjct: 331 PE-VMLEVEVLEVTRSRLNQFGVDWPDSVGYGLLQDTLSTTTATAAGYTTTVTPGGTLAN 389

Query: 241 EGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              +   +G L  F  +    L+   +      LA P +   + + A    G +    T 
Sbjct: 390 GYINLRNRGGLTSFVANPGLTLNLKGQNADTNVLANPRIRVKNREKAKVHIGDKLPVFTT 449

Query: 299 SSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---PSYR 352
           +++     + SV   D G+ L   P V     + +++  EVS  V  +            
Sbjct: 450 TATANVGVSASVNYLDVGLKLDVEPNVTLDDEVSIKVGLEVSSIVKEITGPSNSLAYQIG 509

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A TT+ L  G T VLAGL+ D+ ++    IP L +IP++G  F + +    +TEI +
Sbjct: 510 TRSASTTLRLKDGETQVLAGLISDEERKTTSHIPGLGEIPVVGRAFGSHKDTSTKTEIIL 569

Query: 413 AATPFLVKPVAMRDLSRP 430
             TP +V+ +   +  +P
Sbjct: 570 LITPRIVRNIHRPEYVQP 587


>gi|152985006|ref|YP_001347404.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150960164|gb|ABR82189.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 658

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/448 (19%), Positives = 155/448 (34%), Gaps = 54/448 (12%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT-- 75
              P    L  +  ANA +I+     I + + +   L++           D  V +    
Sbjct: 165 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQ-------KGSHDYSVINLRHG 217

Query: 76  -KADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RF 130
              D   V +        K    A VI      + ++         +  L  +L      
Sbjct: 218 WVMDAAEVLNSAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTAR 277

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG------------------ 172
            A++ +     +D   L   +  I +  +         S  G                  
Sbjct: 278 SANTRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQSGGGRPSNILIRADESTNALVL 337

Query: 173 -RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +    ++ + ++  L++    QV ++  I E+  DI   +G Q +I     G +++  
Sbjct: 338 LADPDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTSF 396

Query: 232 ADFGGKFVSEGGDF-----------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            + G    +                     +   SF  ++ AL   +    L+ P+L  +
Sbjct: 397 GNTGLSIGTLLQALKDDKIPNPLPDGAVVGIGSSSFGALVTALSANSKSNLLSTPSLLTL 456

Query: 281 SGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
             Q A    G    + T S       SS   T+V   D GV L  TP +     + L I+
Sbjct: 457 DNQKAEILVGQNVPFNTGSYTTNSEGSSNPFTTVERKDIGVNLKVTPHINDGAALRLEIE 516

Query: 334 TEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
            E+S     V   +        R   +T+   +G  IVL GL++DD+ Q +  +PLL  I
Sbjct: 517 QEISSIAPNVQQVSDTDIITNKRSIKSTILAENGQVIVLGGLIQDDVVQAESKVPLLGDI 576

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P LG LFR+++    +  + +   P +V
Sbjct: 577 PWLGRLFRSTKDTHTKRNLMVFLRPTVV 604


>gi|320155211|ref|YP_004187590.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
 gi|319930523|gb|ADV85387.1| MSHA biogenesis protein MshL [Vibrio vulnificus MO6-24/O]
          Length = 531

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/304 (21%), Positives = 112/304 (36%), Gaps = 34/304 (11%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++  G  +++  + +A  ++        R        ++ + +     + QV L+  I 
Sbjct: 210 GLIGSGKGQSVVVTPQAGVITVRAFPDEIREV------RQFLGISQERMQRQVILEAKIL 263

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-------DFSVKGVLDRFSF 256
           EV      Q G   S   +S G S S   +  G  V  G               +   SF
Sbjct: 264 EVTLSDGYQQGINWSNISASIGNSGSIVVNRPGSTVLPGLDAIGSLLGGQTNVTISDGSF 323

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
           E VL  +     +  L+ P +TA + Q A    G    Y T  SS              +
Sbjct: 324 EAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGNDQYYVTALSSNVGNDDKSKAVPEVT 383

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP +   G + L +   V E        ++               +R+
Sbjct: 384 LTPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEETKQLNLGGDFQNVTLPLAKSSIRE 443

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K +  +    +P    IP LG LFRN+    ++TE+ I   
Sbjct: 444 SDSVIRARDGDVVVIGGLMKSNTIERVSKVPFFGDIPALGHLFRNTSNLTQKTELVILLK 503

Query: 416 PFLV 419
           P +V
Sbjct: 504 PTVV 507


>gi|37524117|ref|NP_927461.1| hypothetical protein plu0091 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783540|emb|CAE12386.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 344

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 51/232 (21%), Positives = 89/232 (38%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV +   I    R+ L ++G    +       + +          +          +  
Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGMPIGEQINTSTGINRLNINQAANDNMHRFAFNIAR 173

Query: 253 --RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                 E  L ALE+   +  +A P LTA   Q AS   G       VS     ++V   
Sbjct: 174 IHTSLLEMELSALEQENQLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231

Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L   +I   L+I   +    I    G+  +   ++  T V + +G T+
Sbjct: 232 EAVLGMEVTPHILRKNKIRLSLKISQNMPGISISQGGGENLTIDKQEIITQVTVKNGETL 291

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L G+ +    +  + +P LS IP+LG+LF          E+ I  TP L+ 
Sbjct: 292 ILGGIFQQKKGEQTQKVPYLSDIPLLGSLFNQKAHKHSRRELVIFITPQLMD 343


>gi|323491669|ref|ZP_08096847.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
 gi|323314031|gb|EGA67117.1| MSHA biogenesis protein MshL [Vibrio brasiliensis LMG 20546]
          Length = 551

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 124/320 (38%), Gaps = 46/320 (14%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGE 193
           ++E     ++  G  +++  S +A  ++        R         ++ N L +      
Sbjct: 216 QLESAVSQLIGSGSGQSVVVSPQASVITVRAFPDEIR---------EIRNFLMVSQQRMH 266

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--- 250
            QV L+  I EV      Q G   S   +S+G + +       K  + G   ++ G+   
Sbjct: 267 RQVILEAKILEVTLSDGYQQGINWSKAFTSNGTNYTLGQGSTIKDSTTGLPVTLPGLDAI 326

Query: 251 -----------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                      +   SFE VL  +     +  L+ P +TA + Q A    G    + T  
Sbjct: 327 GTLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDF 386

Query: 300 SSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------- 341
           S+   +            +T    G+ L  TP +   G + L +   V +          
Sbjct: 387 SANTDSSSSTTNTTTDIELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVTQEQKEINY 446

Query: 342 GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           G N+  +P  +  +R++D+ +    G  +V+ GL+K +  +    +P L  +P LG LFR
Sbjct: 447 GSNSLTLPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTVEQVSKVPFLGDVPALGHLFR 506

Query: 400 NSRFNREETEIFIAATPFLV 419
           N+    ++TE+ I   P +V
Sbjct: 507 NTSQLTQKTELVILLKPSVV 526


>gi|117619719|ref|YP_857681.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117561126|gb|ABK38074.1| type IV pilus secretin PilQ [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 733

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 113/311 (36%), Gaps = 30/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            +      +L      +  S+ AV + E       ++     S+ K M  +      QV 
Sbjct: 420 AKASEVAALLSSESTKLLSSKGAVSVDERTNVLVVKDTADVISNIKRMLDILDIPVKQVV 479

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246
           ++  +  +     + +G +  +T +    + +     G          S           
Sbjct: 480 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGTIEGNDSSGNNNGGSTITRPGVDDRL 539

Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                           V  + D    +  L ALE+ +    +A P +T  + + A    G
Sbjct: 540 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 599

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348
            +  Y    SS+GATSVT     + L  TP +    R+ L +          +    GD 
Sbjct: 600 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 658

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            S   +   T V + +G T+VL G+ +  I+     +PLL  IP LG LFR +    ++ 
Sbjct: 659 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSENKKR 718

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 719 ELLIFVTPKIV 729


>gi|227824391|ref|ZP_03989223.1| type II and III secretion system protein [Acidaminococcus sp. D21]
 gi|226904890|gb|EEH90808.1| type II and III secretion system protein [Acidaminococcus sp. D21]
          Length = 424

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/256 (28%), Positives = 114/256 (44%), Gaps = 15/256 (5%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +    + ++KV+  ++   + QVTL+  I  ++ D  +++G Q   +G     S+    
Sbjct: 141 GSPGDQARAQKVLARMD-RLQKQVTLEARILSLQEDASRELGLQWKWSGLPQQNSEETD- 198

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                     G     G     SF+ +L AL +    + LA P +  + G+      G  
Sbjct: 199 ----------GGTFHLGHGYTGSFQGILSALCQKGKAKVLATPRIVTVPGKEGKIFIGDH 248

Query: 293 HLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
               T   S G T+      D G+ L +TP V   G I   + TEVS P + ++      
Sbjct: 249 IPVVTEKVSNGTTTTSTEYVDAGIRLSYTPIVGPDGVITASVHTEVSTPTL-ISELHNYR 307

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R ADT V L  G T+V+ GL+ D+ Q+  E IPLLSK+P+LG LF      +  TE+
Sbjct: 308 ITSRTADTNVRLLEGETLVIGGLISDEEQKRLETIPLLSKLPLLGNLFTFRSRKKTRTEV 367

Query: 411 FIAATPFLVKPVAMRD 426
            +  TP+L +P     
Sbjct: 368 VMLLTPYLTEPGRSPA 383


>gi|238758713|ref|ZP_04619887.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
 gi|238703010|gb|EEP95553.1| Protein transporter HofQ [Yersinia aldovae ATCC 35236]
          Length = 437

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 52/231 (22%), Positives = 98/231 (42%), Gaps = 6/231 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L ++G +  +  ++   +    +F  +      +    F+V  +
Sbjct: 206 QQVQLAAHIVTMSRENLHELGVRWGMDEATQPRALRVNNFNVNLPLPNSALSAGFNVARI 265

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +  ALE+   +  +A P L     Q+AS   G    Y       G  ++   
Sbjct: 266 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGVPTIEFK 324

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TI
Sbjct: 325 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAIKRGDSEALLIDKQEIKTQITVNDGETI 384

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ +    Q    +P+L+ IP+LGALF+     +   E+ I  TP L+
Sbjct: 385 VLGGIFQQKNNQGINKVPILADIPLLGALFKQDVRAQTRRELVIFITPRLI 435


>gi|122091112|emb|CAL13995.1| putative membrane transport protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 371

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S     F  +      +    F+V  +
Sbjct: 140 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 199

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +  ALE+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 200 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 258

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TI
Sbjct: 259 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 318

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           VL G+ +    Q    +PLL+ IP LG LF+     +   E+ I  TP L+  
Sbjct: 319 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 371


>gi|171318673|ref|ZP_02907818.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
 gi|171096140|gb|EDT41064.1| type IV pilus secretin PilQ [Burkholderia ambifaria MEX-5]
          Length = 553

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 108/295 (36%), Gaps = 34/295 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +     L      Q   ++   +++    NLL +                      QV 
Sbjct: 229 RALDVQRLLAGATGQRLLSKRGAAAADPRTNLLFVTDLAPRIAQIAGLIDAIDRPSRQVR 288

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244
           ++  I E  +   + +G + ++                    +   AA   G F +    
Sbjct: 289 IEARIVEGEQGFSRNLGARVALRAQGRAPAADGAASASDTRNALDLAARPLGGFEAATAG 348

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 349 FTLFAAPLSRVLDVELSALEAQGRGQIISSPRVVTADRVKAIVEQGSELPYQ-AKVGNGV 407

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  IG      P+   +   T VE+ +
Sbjct: 408 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVEN 465

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 466 GGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRDQRSELVVFITPTVV 520


>gi|229590685|ref|YP_002872804.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
 gi|229362551|emb|CAY49458.1| general secretion pathway protein D/Q [Pseudomonas fluorescens
           SBW25]
          Length = 788

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/320 (21%), Positives = 120/320 (37%), Gaps = 43/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--------------KKVMNLLNIAGE 193
            G   + Q   +A + S  F +     Q   +++              ++V+++L+    
Sbjct: 410 SGGNSSSQAGAQATDQSVAFSAGGVTIQADATTNTLLISAPEPLYRNLREVIDMLDQR-R 468

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDF 245
            QV ++  I EV  D   + G Q          + G ++               +  G  
Sbjct: 469 AQVVIESLIVEVGEDDANEFGVQWQSGDLAGKGVIGGTNLGGSGLQTGGLTSIDALPGGL 528

Query: 246 SVKGVLDRFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           SV  +    +          + +  AL+       L+ P L  +  ++AS   G    + 
Sbjct: 529 SVGYLSGTVNIPGVGNVMDLKVLARALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFV 588

Query: 297 TV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNA 345
           +         +S+    +VT  + G+ L+  P +   G + L I  EVS           
Sbjct: 589 SGSYVTGGGGTSNNPFQTVTREEVGLKLNVRPQISEGGTVKLDIYQEVSSIDERASSSAT 648

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                   R  DT++ L  G  +VL GLL+D   Q  E +P LS IP LGALFRN R   
Sbjct: 649 SAGVVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNEAVPWLSSIPGLGALFRNERRAT 708

Query: 406 EETEIFIAATPFLVKPVAMR 425
            +T + +   P++++  A  
Sbjct: 709 TKTNLMVFLRPYIIRDSAGG 728


>gi|86157073|ref|YP_463858.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85773584|gb|ABC80421.1| type II and III secretion system protein, secretin
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 882

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D +   G V T +          T +        A   ++ ++  L+     QV ++  I
Sbjct: 572 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 621

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
            E   +  +Q+G Q     S +  + +         VS  G                   
Sbjct: 622 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSATPNYAVN 681

Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                           +      F+    L ALE    ++T++ P +  I  + A+   G
Sbjct: 682 LPAAIGQGAGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 739

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
                    +S    + T  +  + L  TP V + G I L+I+   + P      +   P
Sbjct: 740 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 799

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+     + TE
Sbjct: 800 SISKREAETEVLVKDGETTVIGGIYTRSTASKTAAVPFLSKIPLLGFFFRSDTNTDDHTE 859

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 860 LLIFITPRIL 869


>gi|220915798|ref|YP_002491102.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953652|gb|ACL64036.1| type IV pilus secretin PilQ [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 887

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D +   G V T +          T +        A   ++ ++  L+     QV ++  I
Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
            E   +  +Q+G Q     S +  + +         VS  G                   
Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQAPNQGTSSTPNYAVN 686

Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                           +      F+    L ALE    ++T++ P +  I  + A+   G
Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
                    +S    + T  +  + L  TP V + G I L+I+   + P      +   P
Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+     + TE
Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 865 LLIFITPRIL 874


>gi|152989153|ref|YP_001346800.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
 gi|150964311|gb|ABR86336.1| general secretion pathway protein D [Pseudomonas aeruginosa PA7]
          Length = 634

 Score =  167 bits (424), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 59/262 (22%), Positives = 103/262 (39%), Gaps = 18/262 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
             V+  L+     QV ++  I EV  DI + +G Q +          SF           
Sbjct: 325 DNVIAQLD-RPRAQVLVEAAIVEVSGDINEALGVQWAARAGDVAGGTSFGNGGLTIGSLL 383

Query: 241 -------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                            +   +F  ++ AL   +    L+ P+L  +  ++A    G   
Sbjct: 384 NQEAGKRPNLPDGAIIGIGSRNFGALVTALSSDSNNNLLSTPSLLTLDNEAAEILVGQNV 443

Query: 294 LYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
            ++T S +          T+V   D G+ L  TP +     + L+++ E SE        
Sbjct: 444 PFQTGSYTTDSAGASNPFTTVERKDVGITLKVTPHINEGDTLRLKVEQESSELASAPAGI 503

Query: 347 DMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R   +T+    G  IV+ GL+KD+++     +PLL  IP+LG LFR+++  
Sbjct: 504 STSDVITNKRSVKSTILADDGQIIVIGGLIKDNVKTQVSKVPLLGSIPLLGRLFRSTKDV 563

Query: 405 REETEIFIAATPFLVKPVAMRD 426
            E+T + +   P L++  A  D
Sbjct: 564 NEKTNLMVFLRPTLLRNTANAD 585


>gi|157373684|ref|YP_001472284.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
 gi|157316058|gb|ABV35156.1| pilus (MSHA type) biogenesis protein MshL [Shewanella sediminis
           HAW-EB3]
          Length = 567

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 115/334 (34%), Gaps = 48/334 (14%)

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
                        L   +        + V   +  V + G    ++  +  ++ +ET L 
Sbjct: 228 TTKTDFWGELEKTLVSIVGSTGGGRQVVVTPQAGLVTVRGYPNELRQVRTFLQTAETHLQ 287

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                                    QV L+  I EV      Q G Q        G +  
Sbjct: 288 ------------------------RQVILEAKILEVTLSDGYQQGIQWDNVLGHVGSTDI 323

Query: 230 FAADF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                      G  ++          +   +F T+++ L+    +  L+ P +TA + Q 
Sbjct: 324 TFGTSENTEGLGDLITNAIGGVTSLSVKGSNFNTMINLLDTQGDVDVLSSPRVTASNNQK 383

Query: 285 ASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A    G    + T  S          +T    +T    G+ L  TP +   G I L I  
Sbjct: 384 AVIKVGTDEYFVTDVSSTTVAGTTPVTTPEVELTPFFSGIALDVTPQIDGEGNILLHIHP 443

Query: 335 EVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            V +         +             +R++DT ++  +G  +V+ GL+K +  +++  +
Sbjct: 444 SVIDIKEQTKVIKISGSSLELPLAQSDIRESDTVIKAKTGDVVVIGGLMKSENIEVESKV 503

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  IP++G LF N   + ++TE+ I   P +V
Sbjct: 504 PLLGDIPLVGELFTNRSKSLKKTELVILLKPTVV 537


>gi|28899478|ref|NP_799083.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|153839930|ref|ZP_01992597.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|28807714|dbj|BAC60967.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus RIMD 2210633]
 gi|149746550|gb|EDM57538.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ3810]
 gi|328471385|gb|EGF42280.1| MSHA biogenesis protein MshL [Vibrio parahaemolyticus 10329]
          Length = 547

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV      Q G   S   +S G S S   +     +                 +   +F
Sbjct: 280 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
           E VL+ +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 340 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 399

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP + + G + L +   V E    V   ++               +R+
Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 459

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN+    ++TE+ I   
Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 519

Query: 416 PFLV 419
           P +V
Sbjct: 520 PTVV 523


>gi|291086346|ref|ZP_06355526.2| hypothetical protein CIT292_10180 [Citrobacter youngae ATCC 29220]
 gi|291067951|gb|EFE06060.1| protein transport protein HofQ [Citrobacter youngae ATCC 29220]
          Length = 386

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 135/331 (40%), Gaps = 12/331 (3%)

Query: 100 ILIGHDGKQMLNLDILIERDIAH----LEMTLRRFIADSN--IRVEMVSDTVVLHGMVRT 153
           +++  +G  +    +  + + A      +  ++  +   N  I ++      +     + 
Sbjct: 54  LVLRQEGNILHVHSVQWQSENASRQENEQARMQASLPLENRSIVLQYADAAELAKAGEKL 113

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +           T       N    ++ +K +  +++   +QV L   I  +    L+++
Sbjct: 114 LSAKGSMTVDKRTNRILLRDNSVVLNALEKWVAQMDLP-VEQVELAAHIVTINEKSLREL 172

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS---FETVLHALERATAIR 270
           G + S+  +    +                   V   + R +    E  L ALE+   + 
Sbjct: 173 GVKWSLADAQQPGAVGNVTTLASDLSVSAATSRVGFNIGRINARLLELELSALEQKQQLD 232

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +A P L A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L
Sbjct: 233 IIASPRLLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRL 292

Query: 331 R--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +  I   V   V+    G++ +   ++ +T VE+ SG TI L G+     +   + +PLL
Sbjct: 293 KLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETIALGGIFSHKNKAAADSVPLL 352

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IP LG+LFR+     E  E+ +  TP LV
Sbjct: 353 GDIPWLGSLFRHDGKEDERRELVVFITPRLV 383


>gi|283956850|ref|ZP_06374323.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
 gi|283791576|gb|EFC30372.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni 1336]
          Length = 470

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|95929094|ref|ZP_01311839.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134995|gb|EAT16649.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 553

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 72/346 (20%), Positives = 127/346 (36%), Gaps = 64/346 (18%)

Query: 114 ILIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +        L+  L+  +   N   + V+  +  VV+           + +++   +L  
Sbjct: 211 VSESDFWTGLQQALQSLVGRENGRAVIVQPQAGLVVVR-------ALPQELQIVTDYL-- 261

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                          N   +  + QV L+  I EV  +   Q G   +    +   + + 
Sbjct: 262 ---------------NKTQVTLQRQVILEAKIIEVELNDGYQTGINWAGLIHNGNNTATI 306

Query: 231 AADFGGKFVSEGG------------------DFSVKGVLDRFSFETVLHALERATAIRTL 272
               GG ++S+G                          L    FE  + A++    ++ L
Sbjct: 307 GQVGGGTYLSDGVSEIAGTNPLVNGLVTSAFGGVFSTTLQFDDFEAFIEAVKSQGDVQVL 366

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTV 322
           + P ++ ++ Q A    G    + T  SS   T  T              G+ L  TP +
Sbjct: 367 SSPRISTLNNQKAVIKVGTDEFFVTDISSDTVTGTTTTTTPDITLTPFFSGIALDVTPQI 426

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSY---------RVRKADTTVELPSGGTIVLAGL 373
              GR+ L +   VSE V       +             VR++DT VE  SG  +V+ GL
Sbjct: 427 SGQGRVTLHVHPTVSEVVDQTKVITVAGQAQSLPLAFSSVRESDTIVEARSGQVVVIGGL 486

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +K+   +   G+PLL  IP LG LFR+ + +  ++E+ I   P +V
Sbjct: 487 MKNSDTREGAGVPLLGDIPGLGHLFRHQKNSTSKSELIILLKPLVV 532


>gi|290512027|ref|ZP_06551395.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
 gi|289775817|gb|EFD83817.1| protein transporter HofQ [Klebsiella sp. 1_1_55]
          Length = 413

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  +   P                +        G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+ 
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|149926612|ref|ZP_01914872.1| pili assembly protein PilQ [Limnobacter sp. MED105]
 gi|149824541|gb|EDM83757.1| pili assembly protein PilQ [Limnobacter sp. MED105]
          Length = 681

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 57/244 (23%), Positives = 104/244 (42%), Gaps = 12/244 (4%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------KSFAADFG 235
           ++N L+     QV ++  +      + + +G +     + + P          S      
Sbjct: 439 IVNGLD-KPVKQVMIEARVVLADTSVSRDLGIRLRALSARADPGFDEVGDQFGSGNFVNT 497

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G   +    +++            L ALE    +RT++ P +   + + A    G +  Y
Sbjct: 498 GVENATNLGYTLFNANSTRLINLQLRALELENKVRTVSNPRVITSNKEPALIEQGTEIPY 557

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +  +SS GAT+    +  + L  TP +   G + L    +V++  IG+   + P+   R+
Sbjct: 558 QIATSS-GATATEFKEANLKLAVTPQIAPDGTVLLD--VDVAKDSIGIETSNGPAIDTRR 614

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T V +  GGT+VL G+ ++D   L +  P L  IP LG LFR    +R   E+ I  T
Sbjct: 615 VKTKVLVSDGGTVVLGGIFEEDDNVLNDKTPFLGDIPGLGVLFRGKNESRRRAELLIFLT 674

Query: 416 PFLV 419
           P ++
Sbjct: 675 PVVL 678


>gi|299768549|ref|YP_003730575.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
 gi|298698637|gb|ADI89202.1| Type II secretory pathway, component HofQ [Acinetobacter sp. DR1]
          Length = 721

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G            + +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNQINTNVLVNNGETVILGGVFEQTTTNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP+LG LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVLGHLFRKDVKSDDKQELLIFVTPRIV 713


>gi|229576793|ref|YP_001008121.2| putative outer membrane porin HofQ [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 376

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/233 (23%), Positives = 97/233 (41%), Gaps = 6/233 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +  +    S     F  +      +    F+V  +
Sbjct: 145 QQVQLAAHIVTMSRENLQELGVRWGMGDTKPTASLRMSDFNVNLPLPNSAVSAGFNVARI 204

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +  ALE+   +  +A P L     Q+AS   G    Y       GAT++   
Sbjct: 205 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSQGKKGATTIEFK 263

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TI
Sbjct: 264 EAVLGMEVTPKILRNGKITLNLKISQNMPGMAMKRGDSETLLIDKQEIQTQITVNDGETI 323

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           VL G+ +    Q    +PLL+ IP LG LF+     +   E+ I  TP L+  
Sbjct: 324 VLGGIFQQKSSQGVNKVPLLADIPWLGGLFKQDTQQQSRRELVIFITPKLISA 376


>gi|325927911|ref|ZP_08189135.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
 gi|325541751|gb|EGD13269.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           perforans 91-118]
          Length = 624

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 46/261 (17%), Positives = 98/261 (37%), Gaps = 27/261 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
              DQV ++  I        + +G +  + G+ +                          
Sbjct: 362 RPVDQVLIEGRIVIATDTFARDLGAKFGLGGTHTYGDNVATIGSGATGGGVAAGRGLNVN 421

Query: 232 -ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                    +     +   +   F+ +  L AL++      ++ P +   + +      G
Sbjct: 422 LPTGAFTSGATAPSLAYTLLGSNFNLDLELSALQQEGRGEVISNPRIVTSNQREGVIKQG 481

Query: 291 GQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGV 343
            +  Y TV+  TG      +V   +  + L  TPT+ +  R+ L +     EV + +   
Sbjct: 482 REIGYVTVTGGTGGQAATPNVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVDQLIELP 541

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
             G +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF++   
Sbjct: 542 LYGTVPSINRREINTAVLVDDGQTVVIGGVYEFTDRASVNKVPFLGDVPFLGNLFKSRGR 601

Query: 404 NREETEIFIAATPFLVKPVAM 424
            + + E+ +  TP +++  + 
Sbjct: 602 QKSKAELLVFITPKVLRVASA 622


>gi|206602610|gb|EDZ39091.1| Putative type II secretion system protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 615

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 64/365 (17%), Positives = 118/365 (32%), Gaps = 47/365 (12%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +E TLR+ I  + +  +  + TV + G V+ +  +QR +++    L            
Sbjct: 276 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 323

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239
                         +V  ++ IAE+        G   +         + +      G   
Sbjct: 324 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 371

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                         F    V+ ALE    +  + +P +  +SGQ  S  +     Y    
Sbjct: 372 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 431

Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342
                      +     +     G+ L  TPT L   +I +     V+           G
Sbjct: 432 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQIHMHGTVVVNSLQQFVTIDIKG 490

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +     P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF    
Sbjct: 491 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWTVPFLGQIPVLKWLFSGYS 550

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           + ++ TE+ +  TP + +      LS P  D +   D          ++ +       V 
Sbjct: 551 YKKQVTELVVIITPEIRR---TPRLSSPRTDDFLNPDSPVYRKALPGSRPFSVPRLPHVP 607

Query: 462 GQNYK 466
           G    
Sbjct: 608 GYGSN 612


>gi|172059128|ref|YP_001806780.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
 gi|171991645|gb|ACB62564.1| general secretion pathway protein D [Burkholderia ambifaria MC40-6]
          Length = 771

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+       +G Q  +
Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265
                    + A   G    +   + +  G          L  L +              
Sbjct: 429 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 488

Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
                       +    L+ P L  +  + A    G              + ++S    +
Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
               D G+ LH  P +   G + L++ TE S       NA   P++  R   +T+   +G
Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662


>gi|94500433|ref|ZP_01306965.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
 gi|94427468|gb|EAT12446.1| Type II secretory pathway, component PulD [Oceanobacter sp. RED65]
          Length = 524

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 71/350 (20%), Positives = 132/350 (37%), Gaps = 28/350 (8%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIADSNIRVEMVSD-----TVVLHGM 150
           NV   G  G  + +  I  +   A      T  +    S I+    SD        +  +
Sbjct: 145 NVTRTGSSGLTVSSGQITSKNTSADNVNSTTASQLSTASKIQTTASSDFWQTLKTSITTL 204

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           V + +  +  V+ S+  L          S+ ++ ++   ++   QV ++  I EV  +  
Sbjct: 205 VGSSEGRKVIVD-SQASLVVVRAFPNEISAVEQFLDKAQLSLNKQVIIEAKILEVTLNDG 263

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            Q G Q     SS     + +         +  D           F  V+  L+R   ++
Sbjct: 264 YQAGIQWDGLASSGSTEFTPSLSATTLRNPDDIDGIFSLAFTGSDFTGVIQLLKRQGKVQ 323

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFT 319
            L+ P ++ ++ Q A    G    + T  S+               ++T    G+ L  T
Sbjct: 324 VLSSPRISTVNNQKAVIKVGTDEFFVTDVSNDTTTTTTTTSTNPEVTLTPFFSGIALDVT 383

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSYRVRKADTTVELPSGGTIVL 370
           P +     + L +   V+E V      ++             +R+ D+ +   +G  +V+
Sbjct: 384 PQISENNDVILHVHPSVTEVVERNKVIELGDDIFNLPLAVSSIRETDSIIRARNGQVVVI 443

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GLL+D   +    +P L++IPILGALFR S     ++E+ I   P +V 
Sbjct: 444 GGLLQDKQSRTDASVPWLARIPILGALFRQSDQESTKSELVILLQPKVVD 493


>gi|57169056|ref|ZP_00368183.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|305432265|ref|ZP_07401428.1| general secretory pathway protein D [Campylobacter coli JV20]
 gi|57019514|gb|EAL56205.1| general secretory pathway protein D [Campylobacter coli RM2228]
 gi|304444613|gb|EFM37263.1| general secretory pathway protein D [Campylobacter coli JV20]
          Length = 472

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 61/260 (23%), Positives = 106/260 (40%), Gaps = 16/260 (6%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +  L    + QV + V+I  V  +     G              S   +   +  +  G 
Sbjct: 205 LQKLESRLKKQVIIDVSILAVNLNKNHSSGINWQNFNIGLNSQTSDNTNSFMQIQNGQGF 264

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
               G+    +F+++++ L ++     L+ P L A++ Q A  + G    Y+   SS G 
Sbjct: 265 VKNLGLRANLNFDSIVNFLSQSGKTSVLSNPKLMALNNQQAIISIGDTVNYQVKESSKGT 324

Query: 305 TSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDM 348
            + TT            G++L+  P +   G+I LRI   +S+     +           
Sbjct: 325 ENGTTVSESYSNYSIFIGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIA 384

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    +K  + V++ +  T++L GL+  +  Q    +  LSKIPILG+LFR+   N   T
Sbjct: 385 PDTIQKKLSSVVQVENNQTLILGGLISHNRSQNDNSVNFLSKIPILGSLFRSEDENSNIT 444

Query: 409 EIFIAATPFLVKPVAMRDLS 428
           EI    TP +V    +  L 
Sbjct: 445 EIVFIITPSIVDNTHIPSLR 464


>gi|229525096|ref|ZP_04414501.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
 gi|229338677|gb|EEO03694.1| MSHA biogenesis protein MshL [Vibrio cholerae bv. albensis VL426]
          Length = 554

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 60/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S +  +    +  S     S    
Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSALPG 327

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 328 LDAIGSLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKI 447

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +  +    +P L  +P LG 
Sbjct: 448 ITYNSQEITLPLARSSIRESDSVIRAKDGDVVVIGGLMKTNTIERVSKVPFLGDVPGLGN 507

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN     ++TE+ I   P +V
Sbjct: 508 LFRNISNQTQKTELVILLKPTVV 530


>gi|197121096|ref|YP_002133047.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
 gi|196170945|gb|ACG71918.1| type IV pilus secretin PilQ [Anaeromyxobacter sp. K]
          Length = 887

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 110/310 (35%), Gaps = 45/310 (14%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D +   G V T +          T +        A   ++ ++  L+     QV ++  I
Sbjct: 577 DVLSERGSVSTDE---------RTNVLIVKDIPEALVRAEGLVRNLDTEIP-QVLIESRI 626

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
            E   +  +Q+G Q     S +  + +         VS  G                   
Sbjct: 627 VEASSNFNRQLGVQWGGNASFTQATGNPTGVAFPNNVSGAGAAGQSPNQGTSSTPNYAVN 686

Query: 247 ----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                           +      F+    L ALE    ++T++ P +  I  + A+   G
Sbjct: 687 LPAAIGQGSGGGIGLVLGSANGAFNLNLRLSALENNGVVKTISSPKIATIDNKEATI--G 744

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMP 349
                    +S    + T  +  + L  TP V + G I L+I+   + P      +   P
Sbjct: 745 QGISIPFSQTSASGVNTTFVEAKLELKVTPHVTADGSILLKIKATNNAPNSSLTGSNGQP 804

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R+A+T V +  G T V+ G+           +P LSKIP+LG  FR+     + TE
Sbjct: 805 SISKREAETEVLVKDGETTVIGGIYTRSTASKTASVPFLSKIPLLGFFFRSDTNTDDHTE 864

Query: 410 IFIAATPFLV 419
           + I  TP ++
Sbjct: 865 LLIFITPRIL 874


>gi|152988863|ref|YP_001351096.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
 gi|150964021|gb|ABR86046.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas aeruginosa
           PA7]
          Length = 714

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 91/269 (33%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           ++++ L+I    QV ++  I E      K +G +          +        G      
Sbjct: 438 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWNAYGKDGNMGIKDEEG 496

Query: 237 ---------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                                +  + D    +  L A+E+    
Sbjct: 497 LNCGPIAGNCSFPTVGTNKSPSPFVDIGAKDATSGIGIGFITDNIILDLQLSAMEKTGNG 556

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 557 EIISQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 615

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  ++  +  + +P L 
Sbjct: 616 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQTKAVDKVPFLG 675

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
            +P LG LFR       + E+ +   P +
Sbjct: 676 DLPYLGRLFRRDTVVDRKNELLVFLAPRI 704


>gi|157415698|ref|YP_001482954.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157386662|gb|ABV52977.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748339|gb|ADN91609.1| General secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315930985|gb|EFV09960.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 470

 Score =  167 bits (423), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKVTEIVFIITPSIVDSVNAPSL 461


>gi|206575908|ref|YP_002236236.1| protein transporter HofQ [Klebsiella pneumoniae 342]
 gi|206564966|gb|ACI06742.1| protein transporter HofQ [Klebsiella pneumoniae 342]
          Length = 413

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  +   P                +        G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAETGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 240

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 241 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+ 
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 360

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|327480391|gb|AEA83701.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 644

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61
           T    +   +    P    L  +  ANA +I+     I + + +   L++       +L 
Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +                  V     +    K+     +I      + +          +A
Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253

Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164
            L  TL             R    D+    E + D +  L    G   T    Q  +  +
Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313

Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           +  L+            + + ++  L+I    QV ++  I EV  DI   +G Q +I   
Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268
                 +   +FG   +S G   +                  +   SF  ++ AL   + 
Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINKNEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321
              L+ P+L  +  Q A    G    ++T S +          T++   D GV L  TP 
Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +     + L+I+ E+S      +            R   +T+    G  IVL GL++DD+
Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +    +PLL  IP+LG LFR+++    +  + +   P +++  A 
Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597


>gi|308094739|ref|ZP_05891643.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308095427|ref|ZP_05905786.2| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308125606|ref|ZP_05776206.2| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
 gi|308126551|ref|ZP_05910862.2| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308087223|gb|EFO36918.1| msha biogenesis protein mshl [Vibrio parahaemolyticus Peru-466]
 gi|308093091|gb|EFO42786.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AN-5034]
 gi|308109580|gb|EFO47120.1| msha biogenesis protein mshl [Vibrio parahaemolyticus AQ4037]
 gi|308111201|gb|EFO48741.1| msha biogenesis protein mshl [Vibrio parahaemolyticus K5030]
          Length = 530

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/304 (20%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV      Q G   S   +S G S S   +     +                 +   +F
Sbjct: 263 LEVTLSDGYQQGINWSNLSASIGNSGSIIVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
           E VL+ +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 323 EAVLNFMSTQGDLNVLSSPRITAANNQKSVIKVGTDQYFVTELSSNAGNGENSNAVPEVE 382

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP + + G + L +   V E    V   ++               +R+
Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 442

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN+    ++TE+ I   
Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNVEQVSKVPFLGDVPALGHLFRNTSNVTQKTELVILLK 502

Query: 416 PFLV 419
           P +V
Sbjct: 503 PTVV 506


>gi|82778251|ref|YP_404600.1| putative type II secretion protein [Shigella dysenteriae Sd197]
 gi|81242399|gb|ABB63109.1| putative type II secretion protein [Shigella dysenteriae Sd197]
          Length = 611

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 241 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 299

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 300 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 359

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 360 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 419

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 420 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 479

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 480 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 537

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 538 KRNLMVFIRPTILRDGMAAD 557


>gi|115350108|ref|YP_771947.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
 gi|115280096|gb|ABI85613.1| general secretion pathway protein D [Burkholderia ambifaria AMMD]
          Length = 777

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 102/294 (34%), Gaps = 35/294 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+       +G Q  +
Sbjct: 377 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 435

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-------------- 265
                    + A   G    +   + +  G          L  L +              
Sbjct: 436 ASGQFLGGTNLAPTAGTGLGNSIVNLTSGGTAATTGLAANLAGLSQGLNIGWLHNMFGVQ 495

Query: 266 -----------ATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
                       +    L+ P L  +  + A    G              + ++S    +
Sbjct: 496 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 555

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
               D G+ LH  P +   G + L++ TE S       NA   P++  R   +T+   +G
Sbjct: 556 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 615

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 616 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669


>gi|325295622|ref|YP_004282136.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325066070|gb|ADY74077.1| type II and III secretion system protein [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 506

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 112/275 (40%), Gaps = 28/275 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKS 229
                     K+ ++ +N   + QV ++  I EV+ D   ++G         +  G    
Sbjct: 228 TAKPETLKKVKEFIDTINGISDRQVLIEAKIVEVKLDKRNELGINWKYLTFSNFLGSGGE 287

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           +          EG  F +  V    +F  +L  L +   +  L+ P + A++GQ A    
Sbjct: 288 YNTISFNSGAPEGKPFQLSIVKVNNTFSGLLGILSQFGKVNVLSSPRILAMNGQPAMIKV 347

Query: 290 GGQHLYKTVSSSTGATSVTTHDY----------------GVVLHFTPTVLSPGRIGLRIQ 333
           G  +L    + +T  TS ++                   GVVL   P +   G I L I 
Sbjct: 348 GRDYLAIYRTQTTSTTSTSSQTATTLTTEEVTTNSILTEGVVLTIIPKIDDKGNIILNIS 407

Query: 334 TEVSEPVIGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             +S     +  G           + S  +R+ +T V + +G T++L GL+     + KE
Sbjct: 408 PAISSLDSPLITGSTGETTDFINKVYSVNIRQLNTVVRVKNGQTVILGGLIAKSKSKEKE 467

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           G+P+L  IP+LG  F+++     +TE+ I  TP++
Sbjct: 468 GVPILQDIPLLGNAFKSTSTISSKTELVIMLTPYV 502


>gi|258592161|emb|CBE68468.1| protein of unknown function [NC10 bacterium 'Dutch sediment']
          Length = 764

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 67/287 (23%), Positives = 110/287 (38%), Gaps = 40/287 (13%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG---------- 221
                A    +  +  ++I    QV ++  I E  R   + +G Q   TG          
Sbjct: 476 KDLPEAVERMEAFLKQIDIPTP-QVLIEARIVEATRKFSQSLGIQWGGTGIPTKSGSGTG 534

Query: 222 ----SSSGPSKSFAADFGGKFVSEGG---------------------DFSVKGVLDRFSF 256
                 +  S  F  + G    + GG                       ++  + +RF  
Sbjct: 535 ATVFGGTTNSLQFPTNSGLPTTTGGGIPFGSVPLALNLPATSPHLAIGMTIGSLANRFLV 594

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
              L   E    IRTL+ P +     + A    G Q  Y     ++G T V   D  + L
Sbjct: 595 GAQLSVAENQGKIRTLSSPRVATQDNEEAEIKQGTQVPYT-TIDASGRTVVQFQDAFIKL 653

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
              P +   GR+ ++++ E S P   VN   G +     RKA T + + +G T+V+ GLL
Sbjct: 654 KVKPHITPDGRVAMKVEAERSFPGQQVNFSGGFVFPINTRKATTNIMVQNGSTVVIGGLL 713

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVK 420
           +     + + +P+L  IPILG LF+       E  E+ I  TP +++
Sbjct: 714 QSSETIISDQVPVLGDIPILGWLFKRRAIGPDERVELLIFLTPSVLQ 760


>gi|167838164|ref|ZP_02465023.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 572

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 75/432 (17%), Positives = 139/432 (32%), Gaps = 39/432 (9%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            P          ANA     +  E G  + IS+ L +  +  V                 
Sbjct: 145 APRPDTEVTAANANAGAKTEAAAESGDDRAISLNLQQASLAAVFDAFAR-FTGLNIVVSE 203

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            V    ++ L       A   L+   G        ++    +A L    R+     +   
Sbjct: 204 RVRGMVSLRLNNVPWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERQRF---DAHA 260

Query: 139 EMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------ 191
                + +     V     +     L      Q   ++  +  +    NLL +       
Sbjct: 261 RAAQLEPLASRSFVLRYARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRL 320

Query: 192 ------------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPS 227
                          QV ++  I E  R   + +G +              I    +G  
Sbjct: 321 AQIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRATGIVAGRNGTL 380

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
               A   G F +     ++         +  L  LE     + ++ P +       A  
Sbjct: 381 ADLTARPIGGFDAATAGLTLFAARASRLLDVELSVLEAQGRGQIVSSPRVVTADRTKAIV 440

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
             G +  Y+      G + V      + L   P +   GR+ L +  ++++  +G     
Sbjct: 441 EQGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETAS 497

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + 
Sbjct: 498 GPAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQR 557

Query: 408 TEIFIAATPFLV 419
           +E+ +  TP +V
Sbjct: 558 SELVVYITPTVV 569


>gi|146282151|ref|YP_001172304.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
 gi|145570356|gb|ABP79462.1| general secretion pathway protein D [Pseudomonas stutzeri A1501]
          Length = 644

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 87/466 (18%), Positives = 160/466 (34%), Gaps = 58/466 (12%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVI-----ILQ 61
           T    +   +    P    L  +  ANA +I+     I + + +   L++       +L 
Sbjct: 142 TSAAELIPLIRPLVPQYGHLAAVSSANALIISDRSANIARIQDLVRQLDRAESNDYGVLN 201

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
           +                  V     +    K+     +I      + +          +A
Sbjct: 202 LQHGWA--------VDIAEVLRNSLVRGEAKSTAGVQIIADSRTNRLIFIGPSEARSKLA 253

Query: 122 HLEMTL-------------RRFIADSNIRVEMVSD-TVVLH---GMVRTIQDSQRAVELS 164
            L  TL             R    D+    E + D +  L    G   T    Q  +  +
Sbjct: 254 ALAQTLDTPTTRSANTRVIRLRHNDAKSLAETLGDISEGLKSPEGGEATTSRPQNILIRA 313

Query: 165 ETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           +  L+            + + ++  L+I    QV ++  I EV  DI   +G Q +I   
Sbjct: 314 DESLNALVLLADPELIGTMESIVRQLDIP-RAQVMVEAAIVEVSGDITDALGVQWAIDAR 372

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKG--------------VLDRFSFETVLHALERATA 268
                 +   +FG   +S G   +                  +   SF  ++ AL   + 
Sbjct: 373 G-STGGAGGVNFGNTGISVGSVLNAINENEIPNNLPDGAIIGVGTRSFGALITALSSNSK 431

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPT 321
              L+ P+L  +  Q A    G    ++T S +          T++   D GV L  TP 
Sbjct: 432 SNLLSTPSLLTLDNQEAEILVGQNVPFQTGSYTTDAAGANNPFTTIERQDIGVTLKVTPH 491

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +     + L+I+ E+S      +            R   +T+    G  IVL GL++DD+
Sbjct: 492 INEGATLRLQIEQEISSIAPSASLTAQAVDLVTNKRAIKSTILAEDGQVIVLGGLIQDDV 551

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +    +PLL  IP+LG LFR+++    +  + +   P +++  A 
Sbjct: 552 TRTNSKVPLLGDIPLLGGLFRSTQETHIKRNLMVFLRPTVIRDRAG 597


>gi|260424842|ref|ZP_05733440.2| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
 gi|260403342|gb|EEW96889.1| bacterial type II and III secretion system protein [Dialister
           invisus DSM 15470]
          Length = 449

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/392 (18%), Positives = 135/392 (34%), Gaps = 75/392 (19%)

Query: 77  ADVVVHSPRTMY--------LFGKNVGQANVIL----IGHDGKQMLNLDILIERDIAHLE 124
           AD+   +P+           L  +  G   +++    + + G+   +  +    +   + 
Sbjct: 84  ADLDHVTPKEALHAMLVSQGLIAREEGSTLIVVGESAMKNGGRATKSYKL-SYAEAKEVA 142

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             LR+     ++     ++ V+L G           +E+ ET                 V
Sbjct: 143 EGLRQLSDSVHVAYNQTANAVILSGTP---------LEIMETAA---------------V 178

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------------ 226
           +  L++  E QV ++  +  V R   K++G        +                     
Sbjct: 179 LRSLDVP-EKQVKVEAEVIAVNRSHSKELGIDWDFKALTGSGEYRRESWNEQRYVTDDAG 237

Query: 227 ----------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                              +       +       SV G      F   L+AL      R
Sbjct: 238 NIKYDKNGNPRMRNIEHNGWNVKIPEGYAGISYGRSVAGHPYTAFFRANLNALVSTGKAR 297

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328
            LA P +  ++G+ A    G +          G   T+    D G+ L +TP + + G I
Sbjct: 298 ILARPNVVTMNGREAEILIGNKIPVIVEHVDNGVRTTTTEYRDAGIKLTYTPRISADGEI 357

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
              +  EVS P + V          R+A+T V L SG  + + GL+  +  +    +P+L
Sbjct: 358 TANVNAEVSTPYL-VPEMRAYRIITRQANTLVRLRSGDMLTIGGLIDKEENKTFRKVPIL 416

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP+LG LF++   + EE+EI I     ++ 
Sbjct: 417 GDIPLLGKLFQSKSRSVEESEIVIIIKAEILD 448


>gi|86151899|ref|ZP_01070112.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|148925643|ref|ZP_01809331.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315124908|ref|YP_004066912.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841007|gb|EAQ58256.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|145845653|gb|EDK22744.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8486]
 gi|315018630|gb|ADT66723.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 470

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|222053997|ref|YP_002536359.1| general secretion pathway protein D [Geobacter sp. FRC-32]
 gi|221563286|gb|ACM19258.1| general secretion pathway protein D [Geobacter sp. FRC-32]
          Length = 637

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 65/256 (25%), Positives = 106/256 (41%), Gaps = 19/256 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGG 236
           +V+  L+     QV ++  IAEV  D  +++G Q  + G +S  + + A        FG 
Sbjct: 345 QVIQKLD-RRNRQVFVQAMIAEVSIDRARELGVQWGVIGGASNGTVATAGIYDPFGTFGA 403

Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      G   S   +    +F  +L AL+   A+  L+ P +     + A    G
Sbjct: 404 LAPIIKSLGEAGIGTSSLNLAGAATFPAILKALQSNGALNVLSTPNIMTSDNKEAEIFVG 463

Query: 291 GQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
               + T     S+      +   D G+ L   P V     + L I  E+S     +N G
Sbjct: 464 ENVPFLTQSNLSSTGLAQQGIERKDTGITLKIKPMVSEGEYVKLDIYQEISAVKDALNKG 523

Query: 347 DMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R A T+V +    T+V+ GL++D  Q+    IP L  IP+LG LF+     
Sbjct: 524 AAVDITTTKRSAKTSVVVKDTDTVVIGGLIQDQDQETINKIPFLGDIPLLGYLFKTKSMK 583

Query: 405 REETEIFIAATPFLVK 420
           R +T + I  TP+++K
Sbjct: 584 RTKTNLMIILTPYIIK 599


>gi|86153104|ref|ZP_01071309.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|121613593|ref|YP_001001123.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167006016|ref|ZP_02271774.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|85843989|gb|EAQ61199.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|87249586|gb|EAQ72545.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|315058928|gb|ADT73257.1| Type II secretion outermembrane pore forming protein (PulD)
           [Campylobacter jejuni subsp. jejuni S3]
          Length = 470

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|134294486|ref|YP_001118221.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
 gi|134137643|gb|ABO53386.1| type IV pilus secretin PilQ [Burkholderia vietnamiensis G4]
          Length = 550

 Score =  167 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 34/308 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------------AGEDQVT 197
            +     L      Q   ++   +++   MNLL +                      QV 
Sbjct: 226 RAADVQRLLAGATGQRLLSRRGAAAADPRMNLLFVTDLAPRIAQIAELIDAIDRASRQVR 285

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSG-------------PSKSFAADFGGKFVSEGGD 244
           ++  I E  +   + +G + ++                    +    A   G F +    
Sbjct: 286 IEARIVEGEQGFSRNLGARVALRAHGRAPAADGAAAATDTRNALDLTARAIGGFDAATAG 345

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 346 FTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRVKAIVEQGSEVPYQ-AKVGNGV 404

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  IG      P+   +   T VE+  
Sbjct: 405 SGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPTAAGPAIHTKHVQTRVEVED 462

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           GGT+ + G+ +   +     +PLL +IP+LGALFR+   + +  E+ +  TP +V     
Sbjct: 463 GGTVAIGGIYEQLRRDDVTHVPLLGRIPVLGALFRHRARSDQRNELVVFITPTVVGARCD 522

Query: 425 RDLSRPDD 432
             ++   D
Sbjct: 523 PAVTSDAD 530


>gi|288933223|ref|YP_003437282.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
 gi|288887952|gb|ADC56270.1| type IV pilus secretin PilQ [Klebsiella variicola At-22]
          Length = 412

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 62/230 (26%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---FVSEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  +   P                +        G +
Sbjct: 180 QVELAAHIVSMSETSLRELGVKWRLAEAGGSPGSGQITTLSSDMSVNDASTRAGFNIGKI 239

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 240 NGRLLELELSALERKQQVDIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 299

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+  + G+  +   ++ +T VE+ SG T+ 
Sbjct: 300 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQDNGEALAIDKQEIETLVEVRSGETLA 359

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 360 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 409


>gi|17223826|gb|AAL10693.1| hypothetical type II secretion protein [Escherichia coli ETEC
           H10407]
          Length = 616

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|121593092|ref|YP_984988.1| general secretion pathway protein D [Acidovorax sp. JS42]
 gi|120605172|gb|ABM40912.1| general secretion pathway protein D [Acidovorax sp. JS42]
          Length = 781

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 53/270 (19%), Positives = 101/270 (37%), Gaps = 34/270 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV ++  I EV    + + G Q      + G +     +          D ++   
Sbjct: 431 GRRAQVLIESLIVEVSASKVAEFGIQWQGVLGNYGSTLGVLGNNSSVAGRNILDLALAAA 490

Query: 251 LDRFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSAS 286
               +                           + + LE       L+ P L  +  + A 
Sbjct: 491 TGNVTSIANAKPAAGMNLAVAPRINGKYYLGALANFLENTGDANVLSTPNLLTLDNEEAQ 550

Query: 287 FTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
              G    + T S +            T+V   D G++L   P +   G + L +  EVS
Sbjct: 551 IIIGNNVPFVTGSYANTGGSGGAVNPFTTVERKDVGLMLRVRPQINENGTVKLTMYQEVS 610

Query: 338 EPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +      +  + PS   R  ++TV +  G  IV+ GLL+D+    ++ +P++  +P++G 
Sbjct: 611 KVAESTLSNANGPSTSKRSIESTVLVDDGSVIVIGGLLEDNYALGQDKVPVMGDLPVVGG 670

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           LFRN +  R++T + +   P +++  A  D
Sbjct: 671 LFRNEKRTRQKTNLMVFLRPMVIRDSATSD 700


>gi|153952576|ref|YP_001398775.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152940022|gb|ABS44763.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 470

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 107/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V        G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLSESHSSGINWQNFDIGLNSQANNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|262192447|ref|ZP_06050599.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
 gi|262031711|gb|EEY50297.1| general secretion pathway protein D [Vibrio cholerae CT 5369-93]
          Length = 707

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 117/314 (37%), Gaps = 29/314 (9%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHG----------MVRTIQDSQRAVELSETFLSQSGR 173
           +    +     +I      ++  L G            +++        +       +  
Sbjct: 378 KSKASQDTPKQDIIAAAKQESTSLPGNTGYQPRTSNSSQSMSVVSANYRVVIDTKRNALI 437

Query: 174 NQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
            Q   +  ++++ LL        QV L+ T+AEV+ +    +G +          +    
Sbjct: 438 FQGQYADYQRLIELLKFVDQRPRQVLLQATVAEVKVEDGFTLGTEF-------NITSGDI 490

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  ++  G+ ++ GV           A   +   + L+ P + A+  + A  + G 
Sbjct: 491 TGGSNGLIANAGNLNLNGVFG--DVTAKFTAALDSGKAQVLSSPRVIAMDQEPARISIGE 548

Query: 292 QHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           Q   KT   S G        +    D G+ L  TPT+   G + L I  EVS    GV  
Sbjct: 549 QIQVKTGEVSGGGDDSKATVTYQYVDVGITLDITPTINQNGLVELSISQEVS--SQGVIT 606

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           GD      R   T +   SG TI + GL+  D    +  +P+L  IP++G LF+     +
Sbjct: 607 GDSIPINKRSLQTRMLADSGDTIYMGGLISKDNNNSENKVPILGDIPLIGNLFKYRVEKQ 666

Query: 406 EETEIFIAATPFLV 419
             TE+ +  TP+++
Sbjct: 667 NSTELVLLITPYVI 680


>gi|148269971|ref|YP_001244431.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
 gi|147735515|gb|ABQ46855.1| type II and III secretion system protein [Thermotoga petrophila
            RKU-1]
          Length = 1282

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/345 (19%), Positives = 135/345 (39%), Gaps = 35/345 (10%)

Query: 79   VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIR 137
            V + S    YLF    G   V ++    + +       +  +   ++  +        + 
Sbjct: 971  VDLISQNYGYLFDNKSG---VYVLSKPKQDLARRYVYDVPHNFDQIKALIE--FYGGTVY 1025

Query: 138  VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            V+ +++ +V+ G+  TI                             ++  L      Q+ 
Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDNIIEKLK-KPTKQIE 1061

Query: 198  LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSF 256
            +   I  V R ++ ++  +  +  +    +   +       V++  DF  + G +   + 
Sbjct: 1062 ISAKI--VDRSLIDRLSKEAGLELTGGNVNVGSSGAGISFSVTDYLDFEKIFGGILNSNL 1119

Query: 257  ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
                   +  T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ L
Sbjct: 1120 SLQFSDQKTNTLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIEL 1179

Query: 317  HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
            + TP V S   I L +  + SEP   +N  ++P  R R+  T + + +G TI + GL+++
Sbjct: 1180 NITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTRETQTHLIVKNGSTITIGGLIRE 1237

Query: 377  DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                 +  +P L  +P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1238 VTNVTESKLPFLGDLPVIGQFFRTKSENKEKRDLIIFLTVRVVEP 1282


>gi|47155035|emb|CAE85234.1| GspD, hypothetical type II secretion protein [Escherichia coli]
          Length = 616

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|320181011|gb|EFW55932.1| General secretion pathway protein D [Shigella boydii ATCC 9905]
          Length = 686

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 58/318 (18%), Positives = 112/318 (35%), Gaps = 44/318 (13%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V + ++         +        Q    S + V+  L+I    QV ++  I EV    
Sbjct: 318 TVGSGREIVSISASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAEGS 376

Query: 210 LKQIGFQHSITGS--------------------------------SSGPSKSFAADFGGK 237
               G Q +   +                                S   + +   D  G 
Sbjct: 377 NINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTNGD 436

Query: 238 FVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G   
Sbjct: 437 LSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDV 496

Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
                     ++S    +V     G++L  TP +     + + I+ EVS+     +   +
Sbjct: 497 PVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV 556

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
             +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E+ 
Sbjct: 557 --FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKR 614

Query: 409 EIFIAATPFLVKPVAMRD 426
            + +   P +++     D
Sbjct: 615 NLMVFIRPTILRDGMAAD 632


>gi|145298152|ref|YP_001140993.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142850924|gb|ABO89245.1| type IV pilus biogenesis protein TapQ [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 693

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 56/255 (21%), Positives = 98/255 (38%), Gaps = 30/255 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA--------------------- 232
            QV ++  +  +     + +G +  +T +    + +  +                     
Sbjct: 436 KQVVIEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIEGNDGSGNNNGGSAITRPGV 495

Query: 233 ------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 +      +    F V  + D    +  L ALE+ +    +A P +T  + + A 
Sbjct: 496 EDRMNVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPAL 555

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVN 344
              G +  Y    SS+GATSVT     + L  TP +    R+ L +          +   
Sbjct: 556 IEQGTEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTG 614

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            GD  S   +   T V + +G T+VL G+ +  I+     +PLL  IP LG LFR +   
Sbjct: 615 TGDAVSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVSKVPLLGDIPGLGVLFRKTTSE 674

Query: 405 REETEIFIAATPFLV 419
            ++ E+ I  TP +V
Sbjct: 675 NKKRELLIFVTPKIV 689


>gi|153825669|ref|ZP_01978336.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229520028|ref|ZP_04409457.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297580540|ref|ZP_06942466.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
 gi|149740699|gb|EDM54806.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-2]
 gi|229342977|gb|EEO07966.1| MSHA biogenesis protein MshL [Vibrio cholerae TM 11079-80]
 gi|297534956|gb|EFH73791.1| MSHA biogenesis protein MshL [Vibrio cholerae RC385]
          Length = 559

 Score =  167 bits (422), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S +  +    +  S     SV   
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSSGNPITSVLPG 332

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|307131207|ref|YP_003883223.1| type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
 gi|306528736|gb|ADM98666.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Dickeya dadantii 3937]
          Length = 689

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 67/449 (14%), Positives = 138/449 (30%), Gaps = 38/449 (8%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G  + +++  N     +   D + V++     A V   +     + + +     G A +
Sbjct: 158 TGPAEYVNLIRNFSQQRETKEDRRKVMIFPLRYASVSDRTIQYRDQRLVI----PGVATI 213

Query: 100 I--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL-------HGM 150
           +  L+  +                   M           +   ++   +L        G 
Sbjct: 214 LNELMDGNRNTPAGASAAASGMGNDGAMAAASGGGQDASQAIELNARAMLARLATRSSGG 273

Query: 151 VRTIQDSQRAV--ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVR 206
                  +  +  ++S    + +   +       +   L++     Q  V +   I +V 
Sbjct: 274 ATAAARKKDQLNGKVSADVRNNALLIRDDEKRRDEYQQLIDKIDVPQNLVNIDAIILDVD 333

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R  L ++         +     +  +     FVS           D   F   + ALE  
Sbjct: 334 RTALSRLEANWQGKLGAVTGGANMMSGSSTLFVS-----------DFKRFFADIQALEGE 382

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P++  +  Q A                    +V     G  L  TP V+  G
Sbjct: 383 GTASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRG 440

Query: 327 RIG-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            +  +++  ++ +  +  N     S   R    T   +     +VL G   ++     + 
Sbjct: 441 SLSSIQLVIDIEDGQVETNTEGTASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKR 500

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +PLL  IP +G LF + +      E     TP L+            D+    +DA    
Sbjct: 501 VPLLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSADNRRQLNDAMGRV 560

Query: 445 FNRVNK--IYGPKEASEVEGQNYKGAIGF 471
             R +K  ++   E++  E  + +   GF
Sbjct: 561 AQRNSKTDLFSVVESAMRELASGQTPAGF 589


>gi|218670938|ref|ZP_03520609.1| putative pilus assembly protein [Rhizobium etli GR56]
          Length = 186

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 93/177 (52%), Positives = 121/177 (68%), Gaps = 4/177 (2%)

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            + S G  +V   +YG+ L F P VLS GRI L I+T VSEPV G        Y+ R A+
Sbjct: 14  TTDSDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAE 70

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR   F R+ETE+ I ATP+
Sbjct: 71  TSVELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFRQKGFERQETELVIIATPY 130

Query: 418 LVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474
           LV+PVA   L+RPDD++S E+D   FF NRVNK+YG +EA   + Q + G+IGFIYK
Sbjct: 131 LVRPVARNQLNRPDDNFSPENDGATFFLNRVNKVYGRREAPVADAQ-FHGSIGFIYK 186


>gi|254291307|ref|ZP_04962101.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
 gi|150422763|gb|EDN14716.1| MSHA biogenesis protein MshL [Vibrio cholerae AM-19226]
          Length = 559

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 98/263 (37%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S +  +    +  S     SV   
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGAITQDSSGNPITSVLPG 332

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|300721146|ref|YP_003710414.1| putative transport protein [Xenorhabdus nematophila ATCC 19061]
 gi|297627631|emb|CBJ88152.1| putative transport protein, possibly in biosynthesis of type IV
           pilin (fragment) [Xenorhabdus nematophila ATCC 19061]
          Length = 325

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 6/229 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--L 251
            QV +   I    R+ L ++G    +T      S         +         V     +
Sbjct: 96  QQVQIIAHIVTSSREALHELGIHWGVTADPVNRSLGLNRLNLHQPAGSQRHRLVLNTARI 155

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                E  L ALE+   +  +A P LTA     AS   G +     V      T++   +
Sbjct: 156 HANLLEMELSALEQENQLDIIASPRLTASHQHPASIKQGSEIP--YVVQDKDKTTIQFKE 213

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TP +L  G+I L ++   + P   +     +  +   ++  T V + +G T++
Sbjct: 214 AVLGMEVTPHILREGKIRLALKISQNAPGFPVSQGGNENLAIDKQEIMTQVTVRNGETLI 273

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L G+ +      ++ +P LS IP+LG LF  +       E+ I  TP L
Sbjct: 274 LGGIFQQKKVASQQKVPYLSDIPLLGTLFNQNGEQHSRRELVIFITPQL 322


>gi|170728738|ref|YP_001762764.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
 gi|169814085|gb|ACA88669.1| pilus (MSHA type) biogenesis protein MshL [Shewanella woodyi ATCC
           51908]
          Length = 562

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 61/252 (24%), Positives = 102/252 (40%), Gaps = 24/252 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKGV-- 250
            QV L+  I EV      Q G +        G +  SF     G  +S+    ++ GV  
Sbjct: 284 RQVILEAKILEVTLSDGYQQGIEWQNVLGHVGDTDISFGTSPSGSGLSDSITSAIGGVTS 343

Query: 251 --LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------ 302
             +    F T+++ L+    +  L+ P +TA + Q A    G    + T  SST      
Sbjct: 344 MKISGADFTTMINLLDTQGDVDVLSSPRVTATNNQKAVIKVGKDEYFVTDVSSTTVAGTT 403

Query: 303 ----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY------- 351
                   +T    G+ L  TP +   G I L I   V           +          
Sbjct: 404 PVTSPEVELTPFFSGIALDVTPQIDGEGNILLHIHPSVINIKEQTKTIKISGSELELPLA 463

Query: 352 --RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT ++  +G  +V+ GL+K +   L   +PLL  IP++G LF N   + ++TE
Sbjct: 464 QSDIRESDTVIKAKTGEVVVIGGLMKSENIDLVSKVPLLGDIPLVGELFTNRSKSLQKTE 523

Query: 410 IFIAATPFLVKP 421
           + +   P +V+ 
Sbjct: 524 LVLLLKPTVVEA 535


>gi|240136813|ref|YP_002961280.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
 gi|240006777|gb|ACS38003.1| putative General secretion pathway protein D [Methylobacterium
           extorquens AM1]
          Length = 792

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
            + A+ +     + S       +   K++ +L    A   QV L+  IAEV  +   Q G
Sbjct: 461 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPMQVLLETVIAEVTLNNELQFG 520

Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
            Q  +  S           +   ++  +        +  G      +L+   F  VL+AL
Sbjct: 521 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAARGVPGFNYLLNASDFNVVLNAL 580

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
           +  T +  ++ P +T +  ++A    G Q      S  +           +   D GV+L
Sbjct: 581 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 640

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
             TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G+++
Sbjct: 641 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAINDGHSLAIGGMVQ 700

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  Q   E +P+L  +PI+G  FRN    R  TE+ +   P +++     D
Sbjct: 701 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 751


>gi|294146464|ref|YP_003559130.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
 gi|292676881|dbj|BAI98398.1| Flp pilus assembly protein secretin CpaC [Sphingobium japonicum
           UT26S]
          Length = 385

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 95/402 (23%), Positives = 142/402 (35%), Gaps = 79/402 (19%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
           +    + ++ + +   L  P  +  V V       +   S R++ L     G A      
Sbjct: 10  LATVAQTALQVKEQRTLSYPRAIGRVEVDREGVLSIAAPSARSLRLTAIGEGAAT----- 64

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
                                           + V      ++    V    D+  +  +
Sbjct: 65  --------------------------------VSVYGGDGGLMAREPVSVAPDAAASAPI 92

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                                       GE  V + V  A V    LK +GF  S     
Sbjct: 93  VRA-------------------------GEQVVAVDVQFAAVSATTLKALGFNFSKLSGD 127

Query: 224 SGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHALERATAIRTL 272
              +    +  G    +  G            F++           VL AL      + L
Sbjct: 128 IQGAIVSPSSLGSASFNPDGLALEASAPIQNAFNLFLSAPNRGIGAVLSALSSNGLSQLL 187

Query: 273 AEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           A+PTL   SG+ ASF +GG+       VS S    S+   ++GV L  TP VLS   I L
Sbjct: 188 AQPTLLVRSGEQASFLAGGEFPVPVPQVSGSGNTLSIQYKEFGVRLSVTPFVLSKDHIVL 247

Query: 331 RIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           +I  EVSE      + +    +P  R R A+TTVEL SG + V+AGL        KE  P
Sbjct: 248 KIAPEVSELDYNNGVQLQGYVVPGLRRRSAETTVELGSGQSFVIAGLSYSSQTVTKEKTP 307

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           L   IP+LGA F+  +  +E+ E+ I ATP LV P+   ++ 
Sbjct: 308 LFGDIPVLGAFFKRQQNQKEKQELIIVATPRLVGPMKPEEVP 349


>gi|18139873|gb|AAL60184.1|AF426313_4 hypothetical type II secretion protein GspD [Escherichia coli]
          Length = 616

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 113/320 (35%), Gaps = 44/320 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 246 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 304

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 305 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 364

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 365 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 424

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 425 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 484

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 485 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 542

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + +   P +++     D
Sbjct: 543 KRNLMVFIRPTILRDGMAAD 562


>gi|301058098|ref|ZP_07199150.1| general secretion pathway protein D [delta proteobacterium NaphS2]
 gi|300447730|gb|EFK11443.1| general secretion pathway protein D [delta proteobacterium NaphS2]
          Length = 749

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 65/338 (19%), Positives = 133/338 (39%), Gaps = 25/338 (7%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-T 153
           G+A+  + G+   +    +   E++ A      ++  A           +  L G V  T
Sbjct: 404 GEASTQVQGNPFSKAKVAEKKAEKEAAKAGEPTKKRAAGEKGAAASGEGSTTLMGEVTIT 463

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             + + A+ +                  ++++  ++I    QV ++ TIAEV  D   Q 
Sbjct: 464 PDEIRNALII--------EATPSDYKIIEEMLKKIDI-MPRQVLIQATIAEVTLDSSTQF 514

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G ++++   ++  + +F A  G   +      +         +   L AL     +  ++
Sbjct: 515 GVEYALGHGAAVGNAAFMATLGSGGLQYSVGVT-------NKWYAELTALATKGKLNVIS 567

Query: 274 EPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            P + A   Q A      +          +  ++   T++   D GV+L  TP +   G 
Sbjct: 568 SPHVLASDNQEAKIDVSREIPLASGTTNVSSGTTISETTIEYRDTGVILSVTPHINERGL 627

Query: 328 IGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + + +  EVS  E    V   + P++  R   TT+ +  G TI + GL++D   +   G+
Sbjct: 628 VTMDVDEEVSNYEGNQPVAGNEYPTFSKRVVKTTLTVGHGQTIAIGGLIRDRENEETRGL 687

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           P L  +P++  L  +     E+ E+ +  TP +V  + 
Sbjct: 688 PCLVDVPVVKYLTGSWNKETEKIELIVLITPRVVANMD 725


>gi|332524328|ref|ZP_08400549.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
 gi|332107658|gb|EGJ08882.1| fimbrial biogenesis protein [Rubrivivax benzoatilyticus JA2]
          Length = 719

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 53/269 (19%), Positives = 97/269 (36%), Gaps = 41/269 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------------- 225
            QV ++  I E      + +G +     +                               
Sbjct: 452 RQVMIEARIVEADDTFGRALGVKLGANAAPKFYNNGGVGVGVGGNYDDVGYQTGQLLKDP 511

Query: 226 ----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                     P+   +++F G   +     S+            L ALE     + ++ P
Sbjct: 512 GFNSTQFVNLPANISSSNFSGVTSAPTFAVSLFNSSLTRFLNLELSALEADGKGKIVSSP 571

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A    G +  Y+  +SS GATS++     + L  TP +   G + L    +
Sbjct: 572 RVITADQEKALIEQGEELPYQESTSS-GATSISFRKASLKLEVTPQITPEGNVILD--VD 628

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++  +G +     +   +   T V + +GGT+V+ G+           +PLL  IP LG
Sbjct: 629 VNKDSVGRSTAAGFAIDTKHVKTKVLVENGGTVVIGGIYTQSESTDVSKVPLLGDIPGLG 688

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAM 424
            LFR++     +TE+ +  TP +V   A 
Sbjct: 689 VLFRSTTRTSSKTELLVFLTPKIVTDRAA 717


>gi|73542913|ref|YP_297433.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
 gi|72120326|gb|AAZ62589.1| type II and III secretion system protein:NolW-like [Ralstonia
           eutropha JMP134]
          Length = 804

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 108/312 (34%), Gaps = 39/312 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           A   QV ++  I EV      Q+G Q   +  SSSG +  FA    G       + ++ G
Sbjct: 432 ARRAQVYIESMIVEVTSTQASQLGIQWQGLLSSSSGNNNVFAGTNFGTGGQNILNLTLAG 491

Query: 250 VLDRFSFETVLHALER----------------------------ATAIRTLAEPTLTAIS 281
            L   +    + A ++                              ++  L+ P L  + 
Sbjct: 492 ALYNSNHSAGIVAAQQLVPDVGGLNLGVVNKALGLGALLRALGTNGSVNLLSTPNLITLE 551

Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S +        T   +    D G+ L   P +   G + ++I 
Sbjct: 552 NEEAKILIGQNIPITTGSYAQTGGAASVTPFQTFDRKDVGITLRVRPQITDGGLVKMQIF 611

Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            E S  V G       P+  VR  +T V +  G  IVL GL++D      + +PLL  IP
Sbjct: 612 QESSSVVPGTLTQVQGPTTNVRSIETNVLVDDGQIIVLGGLIEDSYGDGVQKVPLLGDIP 671

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD-HYSVEDDAKAFFFNRVNKI 451
            +G LFR    NR +T + +   P++++     D    D   Y           N + + 
Sbjct: 672 WIGGLFRYENKNRAKTNLLVFLRPYVMRTAGAADRLTQDRYDYMRAQQTDFVSPNIMVRD 731

Query: 452 YGPKEASEVEGQ 463
                    +  
Sbjct: 732 ANTPVLPPADAP 743


>gi|326572695|gb|EGE22682.1| general secretion pathway protein D [Moraxella catarrhalis BC8]
          Length = 428

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 61/283 (21%), Positives = 116/283 (40%), Gaps = 15/283 (5%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            +        +V +++   +             +++  L++  + Q+ ++  I E+    
Sbjct: 116 QMLNSLSISDSVAVADISSNAVIVRNDNAFDFAQIIKSLDV-NKKQILIQAVILELSDTD 174

Query: 210 LKQIGFQHSI-TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------DRFSFETVLH 261
            K +G Q +   G+  G      A      ++     SV G L           +  VLH
Sbjct: 175 TKNLGVQWAAGNGAGYGVVNFNPAVSLTNALAGNKSLSVLGALFGYKKNDGNKFYGAVLH 234

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLH 317
           ALE  +    L+ P++ ++  ++AS   G      T S          +++  D G+ L 
Sbjct: 235 ALEHTSNANLLSMPSVLSLDNEAASILIGQNIPVITGSQLDRNGEPFKTISRLDVGISLK 294

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP +    RI +++  EVS  V   N G +        DT +   +G  IVL GL++D+
Sbjct: 295 VTPQITDDNRINMKVYQEVSNVVNTTNDGVV--TNKSVIDTNILSGNGEVIVLGGLMRDE 352

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                +G+P LSK+P LG  F+    + +++ + I   P ++ 
Sbjct: 353 TTTTVQGVPKLSKLPFLGKAFKADLDSAKKSNLVIFLQPTIID 395


>gi|226193920|ref|ZP_03789521.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
 gi|225933865|gb|EEH29851.1| outer membrane protein [Burkholderia pseudomallei Pakistan 9]
          Length = 566

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 72/283 (25%), Positives = 137/283 (48%), Gaps = 11/283 (3%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            E+ +   +S+ L K +++ +   V++  + +P  A   + SPRT+YL G +VG  N+I+
Sbjct: 94  GEMRESTSVSVPLGKSLLVPLDEPVRNRTIGNPAVAQATMVSPRTLYLVGMSVGTTNMIV 153

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLHGMVRTIQDSQRA 160
            G  G     +D+ +  D   L+ +LR+ +    +IRV   +DT+VL G V + Q +Q+A
Sbjct: 154 QGKSGACR-IIDVAVGADAGGLQASLRQLMPRERDIRVSTAADTIVLAGNVSSAQAAQQA 212

Query: 161 VELSETFLSQSGRNQYANSSSKK--VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V +++ + +++      +    +  V+N+L +    QV L+V +AEV + ++ Q+G   +
Sbjct: 213 VAIAKAYSNRTNAGAAGSGGGARADVLNMLTVTSPQQVMLEVKVAEVSKTLINQMGSAVN 272

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           I G     + +         ++  G        ++      + A      ++ LAEP L 
Sbjct: 273 IQGGFGSWTGALVTSL----LTGVGSGIAASKSNKLPLNGSIDAQNTDQPVKILAEPRLV 328

Query: 279 AISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHF 318
            ISGQ A+F +GG+       SS   T   ++   ++GV    
Sbjct: 329 TISGQEATFLAGGKIFIPVPQSSGIGTNTITLQEEEFGVGAEV 371


>gi|297581573|ref|ZP_06943496.1| general secretion pathway protein D [Vibrio cholerae RC385]
 gi|297534411|gb|EFH73249.1| general secretion pathway protein D [Vibrio cholerae RC385]
          Length = 674

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 115/320 (35%), Gaps = 49/320 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHSITGSS---------------------------------------SG 225
           +       +G Q     S                                          
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTETKAVYDTDNNFLRN 412

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            + +   D+     +  G       +    +  +++A+   ++   L+ P++T +    A
Sbjct: 413 ETTTTKGDYSTLASALSGIQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472

Query: 286 SFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +    T SS          +V   + G+ L   P +     + L+I+ EVS  +
Sbjct: 473 SFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLKIEQEVSNVL 532

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591

Query: 401 SRFNREETEIFIAATPFLVK 420
           +    E+  + +   P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611


>gi|90416876|ref|ZP_01224805.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
 gi|90331223|gb|EAS46467.1| putative general secretion pathway protein [marine gamma
           proteobacterium HTCC2207]
          Length = 629

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 115/302 (38%), Gaps = 30/302 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204
           L G     + ++ A ++    L+ +       +  +++ N++        QV ++  IAE
Sbjct: 286 LAGEAVADKKAKAAYQIQIDELNNALVVAAPTAVIREIKNVVAQLDRSRPQVLIEAVIAE 345

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------------------- 245
           +  D  +++  Q + +  + G   +            G                      
Sbjct: 346 LSEDQAQELSSQLAYSSKNRGGYLTNFDGLLATLTGLGISGVEPTAAELGLLPKKVMAVA 405

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------ 299
                        ++ AL+   + + L+ P++  +  + A+ + G +  ++T S      
Sbjct: 406 GDFDSETGKGIGLLIQALKTDGSTKILSTPSVVTLDNEEATLSVGEEVPFQTGSFTSSNN 465

Query: 300 -SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            S+   T++   + GV L   P +     + L I+ E S+   GV      +       T
Sbjct: 466 GSNNPFTTINREEVGVKLKVKPQISKGDSVRLEIEQESSKVKSGVPGLQ--TTSKSTMQT 523

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G  ++L GL++D        +PLL  IP+LG LFR++     ++ + +   P +
Sbjct: 524 NVLIQDGELLILGGLIEDQTGGSATKVPLLGDIPLLGRLFRSTSKADSQSVLMMFIRPTI 583

Query: 419 VK 420
           ++
Sbjct: 584 IR 585


>gi|317407154|gb|EFV87149.1| general secretion pathway protein D [Achromobacter xylosoxidans
           C54]
          Length = 870

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 102/272 (37%), Gaps = 29/272 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           +V++ L+     QV ++  I EV      + G Q      +     +             
Sbjct: 416 EVIDQLDQR-RAQVLVESLIVEVSEQAAAEFGIQWMTGAGNINSGGTSFIGGTNLGGSGL 474

Query: 237 ------KFVSEGGDFSVKGVLDRF--------SFETVLHALERATAIRTLAEPTLTAISG 282
                    + G   S+  V            +   +  A++       L+ P L  +  
Sbjct: 475 TGTGPTSIDALGSGLSLGVVKGTVDVLGNKVINLGVLARAMQNTGEANILSTPNLLTLDN 534

Query: 283 QSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           QSAS           GQ++    +++    ++   D G+ L+  P +   G + L I  E
Sbjct: 535 QSASILVGKTVPFVTGQYVTNGGNNNNPFQTIQREDVGLKLNIRPQISEGGAVKLDIYQE 594

Query: 336 VSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           VS       +A        R  DT+V +  G  IVL GLL+D++      +P LS IP+L
Sbjct: 595 VSSIDESRSSATTGIVTNKRAIDTSVLIDDGQIIVLGGLLEDNVTLTSNNVPGLSSIPVL 654

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           G+LF+     R +T + +   P++V+      
Sbjct: 655 GSLFKYDSRKRTKTNLMVFLRPYVVRDARQSA 686


>gi|303229539|ref|ZP_07316327.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
 gi|302515664|gb|EFL57618.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-134-V-Col7a]
          Length = 399

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 75/326 (23%), Positives = 129/326 (39%), Gaps = 36/326 (11%)

Query: 99  VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           V + GH G +     +++E  +A    LE  ++  + +    V   ++ +VL        
Sbjct: 105 VTVTGHSGAKEHRHVVVVEPKMASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
                                       ++  ++     QV L+ TI  +     K+ GF
Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           + S              D    + +     +  G   +F  +  L  LE +     +A P
Sbjct: 200 RWS-----WLSLTGHGKDKTNSYGAISFGKAPDGEAYKFFVKPELSLLETSGKAVVIATP 254

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ++ A++G++A    G +      S S G     +   + G+ L +TP V   G I   I+
Sbjct: 255 SIMALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPVVTKNGTIDTSIR 314

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            EVS P I V+         R+A T V L  G  +V+ GL+ +  Q+  E IP+L  IP+
Sbjct: 315 AEVSSP-IMVSEMKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPILGDIPL 373

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LG LFR+SR  ++  E+ I     +V
Sbjct: 374 LGKLFRHSRKTKDSVEMVILVKATVV 399


>gi|319789878|ref|YP_004151511.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
 gi|317114380|gb|ADU96870.1| type II and III secretion system protein [Thermovibrio ammonificans
           HB-1]
          Length = 663

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 50/257 (19%), Positives = 97/257 (37%), Gaps = 30/257 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244
             QV +K  I ++     K +GF   I+G +     + +    G +              
Sbjct: 397 SKQVLVKAKIVQLSAKAEKDLGFTWFISGYNRLGDSNLSTYTAGSYGFNTAGYTPLISPD 456

Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                             +         E  L ALE     + ++ P +  +  Q AS  
Sbjct: 457 TYANVSKIPVMDSTLALGILNKAQTLRVELALKALEVDGDAQIISSPKVLTLDNQEASIE 516

Query: 289 SGGQHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IG 342
            G +  Y      +    +  +      ++L   P +     I L I+     P    + 
Sbjct: 517 QGIEIPYRESTVGAGGATSYRIAFKKASLILKVKPHITKDNNILLDIEVRKDSPNYDYVA 576

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +  G+ P+   R   + V + +G T+V+ G+ + +  + + G+P+LS+IP+LG LF+N  
Sbjct: 577 ITGGNEPAINTRNVKSRVMIRNGDTVVIGGIYEKERSKSQSGVPVLSRIPLLGWLFKNQT 636

Query: 403 FNREETEIFIAATPFLV 419
               ++++ I  TP L+
Sbjct: 637 VQVTKSKLLIFITPVLI 653


>gi|294651771|ref|ZP_06729069.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822328|gb|EFF81233.1| type IV pilus assembly protein [Acinetobacter haemolyticus ATCC
           19194]
          Length = 725

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 100/296 (33%), Gaps = 38/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV    T               +K+++LL+++ + QV ++  I     D  +++G +  I
Sbjct: 424 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTREMGVKWGI 482

Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245
                  +                                   +   D G          
Sbjct: 483 LSQGVTRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGATTAGASRIA 542

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTG 303
                L  F  +  L A++       ++ P +     Q A   SG +  Y   T + +  
Sbjct: 543 FGLISLSDFMLDLELSAVQADGYGEVISTPKVMTADKQPAKIESGTKIPYSSSTGAGANA 602

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
                  D  + L  TP++   G++ +++      P      G + +      DT V + 
Sbjct: 603 VPKTEFIDATLSLDVTPSITPDGKVMMKLNITKDAPSNPTPTGQL-TISKNSIDTNVLVD 661

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ + +    +  +P L  +P +G LFR       + E+ I  TP +V
Sbjct: 662 NGETVVLGGIFEQENISSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 717


>gi|330828668|ref|YP_004391620.1| type IV pilus secretin PilQ [Aeromonas veronii B565]
 gi|328803804|gb|AEB49003.1| Type IV pilus secretin PilQ [Aeromonas veronii B565]
          Length = 741

 Score =  166 bits (421), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 115/311 (36%), Gaps = 30/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            +      +L      +   + AV + E       ++     SS K M  +      QV 
Sbjct: 428 AKASEVAALLSSESTKLLSPRGAVSVDERTNVLVVKDTADVISSIKRMLDILDIPVKQVV 487

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------------------------- 232
           ++  +  +     + +G +  +T +    + +  +                         
Sbjct: 488 IEARMVTIDDGFDEALGVRWGVTKNDGHGNSTSGSIAGNDGSGNNNGGSTITRPTADDRL 547

Query: 233 --DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             +      +    F V  + D    +  L ALE+ +    +A P +T  + + A    G
Sbjct: 548 NVNLPVTNAAGTLAFQVARLADGTLLDLELSALEKESKAEIIASPRVTTANQKPALIEQG 607

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDM 348
            +  Y    SS+GATSVT     + L  TP +    R+ L +          +    GD 
Sbjct: 608 TEIPYVES-SSSGATSVTFKKAVLSLKVTPQITPDNRVILDLTVTQDTKGETVPTGTGDA 666

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            S   +   T V + +G T+VL G+ +  I+     +PLL  IP LGALFR +    ++ 
Sbjct: 667 VSINAQSITTQVLVNNGETLVLGGIYQQTIKSDVTKVPLLGDIPGLGALFRKTTSENKKR 726

Query: 409 EIFIAATPFLV 419
           E+ I  TP +V
Sbjct: 727 ELLIFVTPKIV 737


>gi|71900198|ref|ZP_00682337.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730031|gb|EAO32123.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 603

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 99/265 (37%), Gaps = 29/265 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------- 231
              DQV ++  I        + +G +  +  +S     +                     
Sbjct: 336 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSHVTTADSSTSATRGLN 395

Query: 232 ---ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                      S     +   +  +F+ +  L AL++ +    ++ P +   + +     
Sbjct: 396 VDLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIK 455

Query: 289 SGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVI 341
            G +  Y T    V+      +V   +  + L  TPT+ +  R+ L +     E+ + + 
Sbjct: 456 QGKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMIT 515

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
             N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+  
Sbjct: 516 IANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKR 575

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
             ++++ E+ I  TP +++      
Sbjct: 576 GKDKQKAELLIFVTPKVLRVANATA 600


>gi|307731499|ref|YP_003908723.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
 gi|307586034|gb|ADN59432.1| general secretion pathway protein D [Burkholderia sp. CCGE1003]
          Length = 782

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/346 (18%), Positives = 114/346 (32%), Gaps = 39/346 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T        +    + + V++ L+     QV ++  I E+  +    +G Q  +
Sbjct: 373 IQADAATNSLIITAPEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 431

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
             +S     + A       ++                               +  +    
Sbjct: 432 ANNSIFAGTNLATGQSNSIINLTTGAVAAGATGGLASAIATQGVQQGLNIGWIHNIFGVQ 491

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306
               +L AL +      L+ P L  +  + A    G     +T S S            +
Sbjct: 492 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNIPIQTGSYSNLTSGTASSAFNT 551

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362
               D G+ LH  P +   G + L++ TE S  V G          P +  R   +TV  
Sbjct: 552 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLA 611

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G  IVL GL++D+ Q     +PLL  IP +G LFR+ + NR +T + +   P ++   
Sbjct: 612 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIINDR 671

Query: 423 A-MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
              + ++     Y           N + K               +G
Sbjct: 672 DTAQAVTSNRYDYIQGVQGSYRQDNNLMKDNDDPVVPPKPTGPSQG 717


>gi|260775597|ref|ZP_05884494.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
 gi|260608778|gb|EEX34943.1| MSHA biogenesis protein MshL [Vibrio coralliilyticus ATCC BAA-450]
          Length = 545

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 63/314 (20%), Positives = 117/314 (37%), Gaps = 37/314 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           ++E     ++  G  +++  + +A  ++        R   +       + +       QV
Sbjct: 214 QLEQAVSQLIGSGQGQSVVITPQAGVITVRAFPDEIREVRS------FIGVSQQRLHRQV 267

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------KSFAADFGGKFVSEGGDF 245
            L+  I EV      Q G   S   +S+G +            + A   G   +      
Sbjct: 268 ILEAKILEVTLSDGYQQGIDWSKAFTSNGTNYTIGQGTPTTTGTPATLPGLDTIGTLLGG 327

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
               V+   SF+ V+  +     +  L+ P +TA + Q A    G    + T  S+    
Sbjct: 328 QTNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDSYFVTDFSTNVDT 387

Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGD 347
                       +T    G+ L  TP + + G + L +   V        E   G +   
Sbjct: 388 SSTTSTTSTDIELTPFFSGISLDVTPQIDNDGSVLLHVHPAVIDVTEENKEITNGTSTVS 447

Query: 348 MP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           +P  +  +R++D+ +    G  +V+ GL+K +       +P L  +P LG LFRN+    
Sbjct: 448 LPLATSSIRESDSVIRAQDGDVVVIGGLMKSNTLDRTSKVPFLGDVPALGHLFRNTTQYT 507

Query: 406 EETEIFIAATPFLV 419
           E+TE+ I   P +V
Sbjct: 508 EKTELVILLKPTVV 521


>gi|153215373|ref|ZP_01949971.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
 gi|124114744|gb|EAY33564.1| MSHA biogenesis protein MshL [Vibrio cholerae 1587]
          Length = 559

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
               QV L+  I EV      Q G   S   SS+G S +  +                 G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|254558682|ref|YP_003065777.1| General secretion pathway protein D [Methylobacterium extorquens
           DM4]
 gi|254265960|emb|CAX21710.1| putative General secretion pathway protein D [Methylobacterium
           extorquens DM4]
          Length = 794

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 66/291 (22%), Positives = 120/291 (41%), Gaps = 21/291 (7%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
            + A+ +     + S       +   K++ +L    A   QV L+  IAEV  +   Q G
Sbjct: 463 RRDAIGVVADEANNSLVISATRNQYDKILRILGRLDAMPTQVLLETVIAEVTLNNELQFG 522

Query: 215 FQHSITGS-----------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
            Q  +  S           +   ++  +        +  G      +L+   F  VL+AL
Sbjct: 523 VQWFLKNSGSRFNLAQADTNRSVAQGTSGTDALIKAAVRGVPGFNYLLNASDFNVVLNAL 582

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
           +  T +  ++ P +T +  ++A    G Q      S  +           +   D GV+L
Sbjct: 583 QGVTRVNVISSPNITVLDNRTAKLQVGDQVPIVRQSGQSAFAAGAPILNQIEMKDTGVIL 642

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
             TP V   G + L I  EVS+ V    +  + P+ R R+  T+V +  G ++ + G+++
Sbjct: 643 SVTPRVNKNGLVVLDINQEVSDVVKTTTSEINSPTIRQRRVATSVAVNDGHSLAIGGMVQ 702

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  Q   E +P+L  +PI+G  FRN    R  TE+ +   P +++     D
Sbjct: 703 EKAQITNESVPVLGDLPIVGPAFRNRIDGRVRTELIVFIRPKVIRGTVEAD 753


>gi|70730124|ref|YP_259863.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
 gi|68344423|gb|AAY92029.1| general secretion pathway protein D [Pseudomonas fluorescens Pf-5]
          Length = 794

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/270 (21%), Positives = 100/270 (37%), Gaps = 28/270 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE- 241
           +V++ L+     QV ++  I EV  D   + G Q                  G   V   
Sbjct: 460 EVIDQLDQR-RAQVVIESLIVEVSEDDASEFGVQWQAGNLGGHGGFGGVNLGGSGLVGTP 518

Query: 242 ------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                              G   + G+      + +  AL+       L+ P L  +  +
Sbjct: 519 ASKTSIDVLPKGLNVGVVNGTVDIPGIGKVLDLKVLARALKSKGGTNVLSTPNLLTLDNE 578

Query: 284 SASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +AS   G    + T         +S+    +V   + G+ L+  P +   G + L I  E
Sbjct: 579 AASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVGLKLNVRPQISEGGTVKLDIYQE 638

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VS      +         R  DT++ L  G  +VL GLL+D   Q  + +P LS IP LG
Sbjct: 639 VSSVDQRASVDAGTVTNKRAIDTSILLDDGQIMVLGGLLQDGYSQSNDAVPWLSNIPGLG 698

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            LFRN + +  +T + +   P++++     
Sbjct: 699 VLFRNDKRSVTKTNLMVFLRPYIIRDSGAG 728


>gi|323527881|ref|YP_004230034.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
 gi|323384883|gb|ADX56974.1| general secretion pathway protein D [Burkholderia sp. CCGE1001]
          Length = 785

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 38/304 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       ++    + + V++ L+     QV ++  I E+  +    +G Q  +
Sbjct: 374 IQADAATNSLIITASEPVYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQV 432

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
             +S     + A       ++     +                         +  +    
Sbjct: 433 ANNSVFAGTNLATGSSNSIINLTAAAAAAGTTGGLATALGTQGIQQGLNIGWIHNIFGVQ 492

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATS 306
               +L AL +      L+ P L  +  + A    G     +T S S            +
Sbjct: 493 GLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSNLTSGNASSAFNT 552

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVEL 362
               D G+ LH  P +   G + L++ TE S  V G          P +  R   +TV  
Sbjct: 553 YDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVNGTTNAATNPAGPQFTKRSIQSTVLA 612

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            +G  IVL GL++D+ Q     +PLL  IP +G LFR+ + NR +T + +   P ++   
Sbjct: 613 DNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVIISDR 672

Query: 423 AMRD 426
               
Sbjct: 673 DTAQ 676


>gi|332531032|ref|ZP_08406951.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332039513|gb|EGI75920.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 740

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 99/275 (36%), Gaps = 33/275 (12%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------------TGSSSGPSKSF 230
           V++ L++    QV ++  IAEV  D+    G Q                 G++ G     
Sbjct: 397 VIDQLDMR-RAQVFVESLIAEVNADVANDFGIQWQGGIPSGSSSSVVGLMGTNFGSGAGN 455

Query: 231 AADFGGKFVSE---------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             +      S               V+   +  +   +   LE       L+ P L  + 
Sbjct: 456 IFNLASGISSGQPAAPGAGFTAGVGVQRGNNGVALGVLARFLETNRMGNVLSTPNLMTLD 515

Query: 282 GQSASFTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            + A    G    + T   +             ++   D G+ L   P +   G + + I
Sbjct: 516 NEEAKIVIGQNVPFVTGQYTANNSSSGAVNPFQTIERRDVGLTLAVRPQISENGTVKMVI 575

Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS        +        R  DT+V +  G  IVL GLL+D+    +E +P L  I
Sbjct: 576 SQEVSSVDPTSLTSAAGLRTSKRSIDTSVLVDDGAIIVLGGLLQDESSVSEEKVPGLGSI 635

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           P LG LFR+   +R++T + +   P +V+     +
Sbjct: 636 PGLGWLFRSESGSRKKTNLMVFLRPVIVRNTQDSN 670


>gi|241664633|ref|YP_002982993.1| general secretion pathway protein D [Ralstonia pickettii 12D]
 gi|240866660|gb|ACS64321.1| general secretion pathway protein D [Ralstonia pickettii 12D]
          Length = 803

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
           A   QV ++  I EV      Q+G Q  +                               
Sbjct: 428 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 487

Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                  S +         V +                 +L AL    ++  L+ P L  
Sbjct: 488 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 547

Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  + A    G      T S +        T   +    D G+ L   P +   G + ++
Sbjct: 548 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 607

Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q  ++ +P L  
Sbjct: 608 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 667

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449
           IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D +  F    + 
Sbjct: 668 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 726

Query: 450 KIYGPKEASEVEGQNYKGAI 469
                K+   +         
Sbjct: 727 PTTSDKDTPVLPTPEAMRPA 746


>gi|167620691|ref|ZP_02389322.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 572

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 74/431 (17%), Positives = 141/431 (32%), Gaps = 39/431 (9%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P++     +  A A     +  E    + IS+ L +  +  V                  
Sbjct: 146 PALPSDTEVASAGANANAETAAESDDNRAISLNLQQASLAAVFDAFAR-FTGLNIVVSER 204

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           V    ++ L       A   L+   G        ++    +A L    RR     +    
Sbjct: 205 VRGTVSLRLNNVRWRSAFDALLDAHGLAMARRGSVIWVAPVAELAERERRRF---DAHAR 261

Query: 140 MVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------- 191
               + +     V     +     L     +Q   ++  +  +    NLL +        
Sbjct: 262 AAQLEPLASRSFVLRYARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLA 321

Query: 192 -----------GEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSK 228
                         QV ++  I E  R   + +G +              +    +G   
Sbjct: 322 QIADLIGKLDTPSRQVLIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLA 381

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              A     F +     ++         +  L ALE     + ++ P +       A   
Sbjct: 382 DLTARPISGFDAATAGLTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVE 441

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G +  Y+      G + V      + L   P +   GR+ L +  +V++  +G      
Sbjct: 442 QGAELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASG 498

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   +   T VE+ +GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +
Sbjct: 499 PAIHTKHVQTRVEVENGGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRS 558

Query: 409 EIFIAATPFLV 419
           E+ +  TP +V
Sbjct: 559 ELVVYITPTVV 569


>gi|327482460|gb|AEA85770.1| general secretion pathway protein D [Pseudomonas stutzeri DSM 4166]
          Length = 740

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 111/276 (40%), Gaps = 12/276 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V +AEV  +  + +G       +S G  +       G         ++  +     
Sbjct: 468 VMIDVLLAEVNINDREGLGIDWRNITASLGGKELLIGTANGL---GASGLNISALNSAGQ 524

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVT 308
            +  L+A          + P L   SGQ A    G +    T ++ +  T       +V 
Sbjct: 525 TKAALNAFYENRQAVIRSSPKLMVRSGQEARIEVGNEIPVVTGTTQSTETGNAPITQTVQ 584

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGT 367
               GV+L   PTV + G + L++  E+SE        ++ P    RK +TT+ L  GG+
Sbjct: 585 YRKTGVLLSIKPTVQASGVVDLQVSQELSESTDTSTGENLTPVINNRKVETTLTLRDGGS 644

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRD 426
           ++LAGL+  +  +   G+PLL  +P +G LF++   +   TE+ +   P++++     + 
Sbjct: 645 VMLAGLISSNKGRGDTGVPLLGDLPWVGNLFKSQSASENRTELIVMIIPYIIRDFDEAQS 704

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           L+R        + A +     V ++           
Sbjct: 705 LTRSYQDRLPLNSAPSLERRGVYRLPAADTTPPTAP 740


>gi|309780546|ref|ZP_07675293.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
 gi|308920701|gb|EFP66351.1| general secretion pathway protein D [Ralstonia sp. 5_7_47FAA]
          Length = 805

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 67/320 (20%), Positives = 108/320 (33%), Gaps = 42/320 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
           A   QV ++  I EV      Q+G Q  +                               
Sbjct: 430 ARRAQVYIESMIVEVTATKASQLGIQWMVGAGGPNTYGGGGTNFGTGSGNLLTLAGTIAT 489

Query: 226 ------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                  S +         V +                 +L AL    ++  L+ P L  
Sbjct: 490 ITTGGIGSTAAQTALSSVNVGQLNGGQFGVFNKASGLGALLSALGSDGSVNVLSTPNLIT 549

Query: 280 ISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  + A    G      T S +        T   +    D G+ L   P +   G + ++
Sbjct: 550 LDNEEAKILIGQNVPITTGSYAQTGTSASVTPFQTFDRKDVGITLRVKPQITDGGLVKMQ 609

Query: 332 IQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           I  E S  V G  NA   P+  VR  +T V    G  +VL GLL+D+ Q  ++ +P L  
Sbjct: 610 IFQESSAVVPGTQNATQGPTTNVRSIETNVLANDGQVVVLGGLLEDNYQDGEQKVPGLGD 669

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA-FFFNRVN 449
           IPILGALFR+    R +T + +   P +++  A    +  D+ Y+   D +  F    + 
Sbjct: 670 IPILGALFRSENKTRVKTNLLVFLRPIILR-TADATGALSDNRYNYMRDTQQGFVSPNML 728

Query: 450 KIYGPKEASEVEGQNYKGAI 469
                K+   +         
Sbjct: 729 PTTSDKDTPVLPTPEAMRPA 748


>gi|126666716|ref|ZP_01737693.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
 gi|126628761|gb|EAZ99381.1| type 4 fimbrial biogenesis protein PilQ [Marinobacter sp. ELB17]
          Length = 705

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/332 (18%), Positives = 123/332 (37%), Gaps = 40/332 (12%)

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            T ++    + +R++++         V  +  + + +  S  F+S   R     S  + V
Sbjct: 373 ETTKQIAELAPLRLDIIQVNYAKAAEVVALVQADQELISSRGFISSDSRTN-TISVRETV 431

Query: 185 MNLLNIA--------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG- 235
             L  I            QV+++  I   + ++ + +G +       +  + S       
Sbjct: 432 EKLNEIRRLVSTWDVAVRQVSIEARIVRAQTNVAESLGVRWGGASYGNNGNNSTVVGGSL 491

Query: 236 ---------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                                      G        F+V      F  +  L ALE    
Sbjct: 492 ETVGGVMGAGAANSTSVTFPGALAVDLGVSGDGASSFAVGFSGGDFLVDLELSALESDGK 551

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              +++P +     Q+AS  SG +  ++  SSS   ++ +  +  + L  TP +    +I
Sbjct: 552 AEIVSQPRVVTADRQTASIKSGQEIPFQEASSSGATST-SFKEAVLSLEVTPQITPDDKI 610

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + +  EV++   G +  + P+       T V + +G TIVL G+ +    +     P L
Sbjct: 611 IMDL--EVTQDSRGEDTPNGPAINTNSVTTQVLVANGETIVLGGIFESTNTETTTKTPFL 668

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP LG LF+ ++     +E+ I  TP ++K
Sbjct: 669 GDIPYLGRLFKRTQTTELRSELLIFITPKIIK 700


>gi|127514547|ref|YP_001095744.1| general secretion pathway protein D [Shewanella loihica PV-4]
 gi|126639842|gb|ABO25485.1| general secretion pathway protein D [Shewanella loihica PV-4]
          Length = 707

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 58/283 (20%), Positives = 103/283 (36%), Gaps = 47/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 338 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATEAGGGTQFNNLGPTIGEIGAGI 396

Query: 236 --------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                               + G    +   +    F  ++ A+
Sbjct: 397 WAAQDEKASNSCTGSGDNLTCTDNPDKKGDITLLAQALGKVNGMAWGVAMGDFGALIQAV 456

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVSSSTGATSVTTHDYGVVLH 317
              T    LA P++T +  Q ASF  G +          +  +S    +V   + GV L 
Sbjct: 457 SSDTKSNVLATPSITTLDNQEASFIVGDEVPVLTGSQNSSNGNSNPFQTVERKEVGVKLK 516

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             P +     + L I+ EVS            ++  R+  TTV   SG  +VL GL+ ++
Sbjct: 517 VVPQINEGTTVKLTIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINEE 574

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +Q+  + +P L  IPILG LF++S   +++  + +   P +++
Sbjct: 575 VQESVQKVPFLGDIPILGHLFKSSSSGKKKKNLMVFIKPTIIR 617


>gi|294101775|ref|YP_003553633.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
 gi|293616755|gb|ADE56909.1| type II and III secretion system protein [Aminobacterium
           colombiense DSM 12261]
          Length = 556

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 51/284 (17%), Positives = 98/284 (34%), Gaps = 11/284 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAE 204
           +    + ++ +    ++ E     +           KV   + +      QV ++  I E
Sbjct: 269 IASTAKMVKQATGVQKIVEDERLNTLYVTADREQLLKVERYVELIDRPGKQVMIEARIVE 328

Query: 205 VRRDILKQI-----GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FET 258
           +      ++                G        +   +        +  +       + 
Sbjct: 329 IADRASHEVASCLESIYKHWMLEYKGRGTPGRIGYSDSYSEGMFGEDITSLSGTVKKLDA 388

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
           ++  LE+      LAEP++  I G  A      ++ Y +     G  +  + + G  L  
Sbjct: 389 LISTLEKEEKGHILAEPSVITIEGTKARIQLVQKYPYVSTRDEAGNPTYVSEEVGPQLEI 448

Query: 319 TPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           TP V     I +++     EV     G      P    R+ +T V +  G   V+ GL K
Sbjct: 449 TPFVGRDEIITIKLVIKTGEVVSWREGARGETYPETSTRQVETQVRVRDGEPFVIGGLFK 508

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  +  +   PLL  IPILG+LF      +E+ E+ I   P ++
Sbjct: 509 ELKRGNQYKFPLLGDIPILGSLFSTQYTEKEKNEVIIIVIPHIL 552


>gi|328952531|ref|YP_004369865.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
 gi|328452855|gb|AEB08684.1| general secretion pathway protein D [Desulfobacca acetoxidans DSM
           11109]
          Length = 794

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 62/268 (23%), Positives = 108/268 (40%), Gaps = 34/268 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV  +V IAEVR     + G +  +  S +  ++S + + G    S      V G + 
Sbjct: 491 PRQVLNEVLIAEVRLTDDLKYGLEFLLGQSPTTATESTSDNSGALVASSTSTTIVPGTIQ 550

Query: 253 RFSFE-------------------------TVLHALERATAIRTLAEPTLTAISGQSASF 287
                                          +++ L     +  LA P + A + Q A  
Sbjct: 551 GVDINSPASAQFAAASGLTFVALDTANKLKGLINLLSSEGKVNILASPHIMAANNQEARI 610

Query: 288 TSGGQHLYKTVSS--------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             G +    +  S        S    +V   + G++L   P + + G + L I  EVS  
Sbjct: 611 MIGEEVPILSSQSIPLVSQTTSFQTNTVQYRNTGIILTVKPQINAKGLVTLEIAQEVSNA 670

Query: 340 VIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P++ VR A T +      T+VL GL+++D+ + + GIP L +IP+LG LF
Sbjct: 671 TATTTGVTSSPTFTVRHAKTQLITGDNQTVVLGGLIREDLTETQAGIPGLRRIPLLGPLF 730

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRD 426
            ++  +R++TE+ +  TP +V  +    
Sbjct: 731 GSTGVSRQKTELVVLITPHIVTNLQEGA 758


>gi|284047888|ref|YP_003398227.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283952109|gb|ADB46912.1| type II and III secretion system protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 405

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 85/412 (20%), Positives = 148/412 (35%), Gaps = 41/412 (9%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           +A  P       A +      + +    ++ L+  I   + +++Q             + 
Sbjct: 20  LAAEPLSLSVQEAPVRDVLQSMAQMAGRNLVLDSQIPGTLSLEIQ------------QLP 67

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
            P+ + +  ++ G    +    +G  +    +     +  L   L        I     +
Sbjct: 68  FPQALEMVTRSQG----LCFREEGNTLW---VASPERMDALYGRL-TVHPLEYISARETA 119

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           +T+                 L      +  R + A  +              Q+TL+  I
Sbjct: 120 ETLKPLFSTPLAWSRDTNAILFHGSPGEENRLKEALKALD--------RPTRQITLEARI 171

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             +     +++G Q   +    G  K              G     G     SF+  L A
Sbjct: 172 LSLGESASRELGLQWDWSALPEGRKKGEGG---------FGGRLHLGHSYGASFQARLSA 222

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320
           L +    + LA P +  + G+ AS   G         V++ST  ++    D G+ L +TP
Sbjct: 223 LCQEGKAKVLATPRIITLPGREASIFIGDHIPVVTEKVTNSTTTSTTEYVDAGIRLSYTP 282

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   G I  ++ TEVS P + +          R ADT V L    T+V+ GL+ +  Q 
Sbjct: 283 YLSQDGLITAKVHTEVSTPTL-IAELKNYRITSRTADTHVRLREKETLVIGGLISEQEQH 341

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM-RDLSRPD 431
             E IPLLSK+P+LG LF+    +R  TE+ +  TP+L  P         PD
Sbjct: 342 RMEAIPLLSKLPLLGELFKFRSRSRNRTEVCMFLTPYLSGPGQPLPAAVLPD 393


>gi|205356095|ref|ZP_03222862.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
 gi|205345938|gb|EDZ32574.1| putative type II protein secretion system D protein [Campylobacter
           jejuni subsp. jejuni CG8421]
          Length = 470

 Score =  166 bits (420), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 65/272 (23%), Positives = 107/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +        G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQSFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|327479223|gb|AEA82533.1| type 4 fimbrial biogenesis protein PilQ [Pseudomonas stutzeri DSM
           4166]
          Length = 706

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/334 (15%), Positives = 117/334 (35%), Gaps = 37/334 (11%)

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
           ++A L   + +        +  +  +V  +G V   + S    + +   ++   + +   
Sbjct: 368 ELAPLRREVVQVNYAKAADIARLFQSVTSNGAVAEDRGSIAVDDRTNNIIAYQTQERLDE 427

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-- 236
               +++  L+I    QV ++  I E      K +G +   + ++            G  
Sbjct: 428 LR--RIVAQLDIPVR-QVMIEARIVEANVGYDKALGVRWGGSYTNDNWGLYGKDGAIGRD 484

Query: 237 -------------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                            ++      +  V D    +  L A+E+
Sbjct: 485 EDGGRYLLPGTDKVGNFTLEDALAPVPFVDLGVLNSTAGIGIGYVSDHGILDLQLSAMEK 544

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +   
Sbjct: 545 TGNGEIVSQPKVVTADKETAKILKGAEIPYQEASSSGATST-SFKEAALSLEVTPQITPD 603

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            RI + ++     P        +P     + +  V +  G TIV+ G+  +      E +
Sbjct: 604 NRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLVTDGETIVIGGVFSNSQISSIEKV 663

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P L  +P +G LFR      +++E+ +  TP ++
Sbjct: 664 PFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRIL 697


>gi|307578579|gb|ADN62548.1| type IV pilus secretin PilQ [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 581

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 105/264 (39%), Gaps = 28/264 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------------GSSSGPSKSFAA 232
              DQV ++  I        + +G +  +                   GSS+  ++    
Sbjct: 315 RPVDQVLIEGRIVIATDSFARDLGAKFGVGAASRFSDNTATIGSNVTAGSSTSATRGLNV 374

Query: 233 DFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           D GG   +        +   +  +F+ +  L AL++ +    ++ P +   + +      
Sbjct: 375 DLGGPTNTTASVLPSLAYTLLGPKFNLDLELSALQQESRGEVISNPRIVTANQREGYIKQ 434

Query: 290 GGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
           G +  Y T    V+      +V   +  + L  TPT+ +  R+ L +     E+ + +  
Sbjct: 435 GKEIGYVTITGGVAGGQATPNVQFKEAVLELRVTPTITNDNRVFLNMTVKKDEIDQMITI 494

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N G +P+   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+   
Sbjct: 495 ANFGTVPTLNKREINTAVLVDDGQTVVIGGVYEFSDRNSVSKVPFLGDVPFLGNLFKKRG 554

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
            ++++ E+ I  TP +++      
Sbjct: 555 KDKQKAELLIFVTPKVLRVANATA 578


>gi|154174515|ref|YP_001408333.1| type II and III secretion system protein [Campylobacter curvus
           525.92]
 gi|153793105|gb|EAU00522.2| type II and III secretion system protein [Campylobacter curvus
           525.92]
          Length = 506

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 56/277 (20%), Positives = 109/277 (39%), Gaps = 28/277 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS----ITGSSSGPS 227
                     +  +N +    + QV + V+I  V  +   + G   S       S  G  
Sbjct: 208 TGTPSQLRRVESYINEVQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYLGGD 267

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISG 282
            +  ++ G      G        L+      FS + +++ LE     + ++ P +T ++ 
Sbjct: 268 PTKPSNAGWNNRGNGLSAGFGQTLNIAANLNFSLDGMMNFLETNGKAKVISSPKVTTLNN 327

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRI 332
           Q A  + G    Y+ +  +  A ++           +   G++L+  P V    +I LRI
Sbjct: 328 QQALISVGDNINYRVMEQTDSANALNDRVKTTYKQYSVFIGILLNLLPEVSDNNKIMLRI 387

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQLKE 383
              +S      +     +  +R+           T V++ SG TIVL GL+     +   
Sbjct: 388 NPSLSSFKYQEDDVRAQNTNIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIGQTKNKQNT 447

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P+L+ IP+LG  F++++   + TE+    TP +V 
Sbjct: 448 AVPILADIPLLGNAFKSTKDAVKTTELIFVITPRVVD 484


>gi|238896859|ref|YP_002921604.1| outer membrane porin HofQ [Klebsiella pneumoniae NTUH-K2044]
 gi|238549186|dbj|BAH65537.1| outer membrane porin [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 414

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  + S P                +        G +
Sbjct: 182 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 241

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 242 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 301

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 302 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 361

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 362 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 411


>gi|221069059|ref|ZP_03545164.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
 gi|220714082|gb|EED69450.1| type IV pilus secretin PilQ [Comamonas testosteroni KF-1]
          Length = 703

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
            QV ++  I E R    + +G +       S                       G   + 
Sbjct: 450 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSGSGSSSKFPSGNFVNL 509

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   G        FSV            L ALE     + ++ P L       A    G
Sbjct: 510 PASVAGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 569

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y   +   GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 570 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 626

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 627 IDTKHIKTQVLVENGGTVVIGGIFEMEETNQLNKVPLFGDLPVLGHLFRSNTKASTKREM 686

Query: 411 FIAATPF 417
            +  TP 
Sbjct: 687 LVFITPK 693


>gi|332977545|gb|EGK14316.1| type IV pilus biogenesis protein PilQ [Psychrobacter sp.
           1501(2011)]
          Length = 608

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 105/312 (33%), Gaps = 43/312 (13%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G    +         + T          + ++ + +++ ++I    QV ++  I     
Sbjct: 297 KGSSTLLSSRGVIAVDTRTNTLIVKDTADSINNIRMLISQIDIP-VQQVMIEARIVSATD 355

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFG-------------------------------- 235
           +  K++G +  I  +    + +                                      
Sbjct: 356 NFSKELGVKWGILSNGVANNDTLLVGGSDQTLADLKQFSRRNTTFKGKPVSYPDYAVSRP 415

Query: 236 -------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                  G     G        +     +  L A++       ++ P +  +  Q+A  +
Sbjct: 416 DNLNIDLGIANPAGSIAFGILSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTAKVS 475

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           SG +  Y++ S   G T     +  + L  TP +   G I L++  E   P    +   +
Sbjct: 476 SGTKIPYQSESEGGGTT-TQFEEALLSLEVTPNITPEGEISLQLNIENGRPNPVSSG--V 532

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                 +  T V +  G TIVL G+ ++ I    E +P    +P+LG LF+      ++ 
Sbjct: 533 ILIDTDRLSTHVTVADGQTIVLGGIYRNQIFNNVEKVPFFGDLPLLGRLFKKDLRRNDKQ 592

Query: 409 EIFIAATPFLVK 420
           E+ I  TP L++
Sbjct: 593 ELLIFVTPTLIQ 604


>gi|317494398|ref|ZP_07952812.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316917648|gb|EFV38993.1| type IV pilus secretin PilQ [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 437

 Score =  166 bits (420), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 76/422 (18%), Positives = 153/422 (36%), Gaps = 33/422 (7%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-----PVDVQDVLVSDPTKADVV 80
            P     + A +      +   + +++ +++ +          V  +  + +     ++ 
Sbjct: 30  TPITLAFSDAPLVNVLQALADNQHLNLIVSEDVKGNTSLKLVDVPWKRAMQAIARLHELS 89

Query: 81  V-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
           +  +   +++      Q   ++     +          +    L + L++   D+ ++  
Sbjct: 90  IEQTGNILFV------QTMAVVDKRQERVHNKQLQENAQRPISLTIALQQADVDAVVKNL 143

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
                 +L        D +    L       +   Q       + ++        QV L 
Sbjct: 144 TQQKGGLLSAQGTVSADPRTNTILVRDLPENTRAVQAWIDELDQPVS--------QVQLT 195

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAADFGGKFVSEGGDFSVKG 249
             I  + R+ L ++G +    GS    S            F      +  S    F +  
Sbjct: 196 AHIVTINRESLNELGVRWGTAGSDETTSSDSDSSNFRLNQFNMGLPAEGRSFNAGFQIAR 255

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
           +  R     +    +    +  +A P L A + Q+AS   G +  Y+  S ++G+TS+  
Sbjct: 256 IGGRLLELELSALEQED-NVEIIASPHLMATNLQTASIKQGTEIPYEVSSGASGSTSIEF 314

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGT 367
            +  + +  TP V+  G+I L +Q   + P   I    G+  +   ++  T V L  G T
Sbjct: 315 KEAVLGMEVTPRVMRNGKITLTLQITQNMPGRSIKQGDGEALAIDKQEIKTQVTLSDGDT 374

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           ++L G+ +      K  +P L  IP+LGALFR+S    +  E+ I  TP LVK      L
Sbjct: 375 VILGGIFQRQTTHGKTQVPKLGDIPLLGALFRDSTDASKRRELVIFITPKLVKTETPSSL 434

Query: 428 SR 429
            R
Sbjct: 435 LR 436


>gi|283851919|ref|ZP_06369195.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283572643|gb|EFC20627.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 542

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 110/299 (36%), Gaps = 23/299 (7%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           +    S + + L  +          A S    ++  ++     QV++   + EV  D   
Sbjct: 225 KDGSASLQILPLKGSNTVVVTALPAAQSQVANILANMDKRTP-QVSISAMLVEVILDESS 283

Query: 212 QIGFQHSITGSSSG-----------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           ++G    +   SS                   S+S +A+      +         +    
Sbjct: 284 KMGLDWKLRAWSSNKAYNEFAQDTLAKTLETGSQSASANLAKYSDAGTKAAMFFNIFPGG 343

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS----VTTH 310
               ++H +   T  + L+ P L     Q AS + G +        +          +  
Sbjct: 344 YLSMLVHMISSDTNAKILSSPHLLVADNQEASISLGREIPILKEYRTDTNNDPIKTYSQR 403

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            +G+ L  TPT+   G + L++  ++S         D      R ADTTV +    T+V+
Sbjct: 404 TFGLELKMTPTIADNGDVTLKVSQKLSNLDEQDTTNDTYKASERTADTTVVVHDKQTLVI 463

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
            GL     ++   G P   KIP+LG LF     ++++ E+ +  TP +V+ P+    +S
Sbjct: 464 GGLTMQTDEKEDSGTPTARKIPVLGYLFGTKSTSKQKRELLLFITPTVVRDPIQADAMS 522


>gi|152972270|ref|YP_001337416.1| outer membrane porin HofQ [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|150957119|gb|ABR79149.1| putative transport portein [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 413

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  + S P                +        G +
Sbjct: 181 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 240

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 241 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 300

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 301 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 360

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 361 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 410


>gi|209515818|ref|ZP_03264681.1| general secretion pathway protein D [Burkholderia sp. H160]
 gi|209503845|gb|EEA03838.1| general secretion pathway protein D [Burkholderia sp. H160]
          Length = 792

 Score =  166 bits (419), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 65/324 (20%), Positives = 111/324 (34%), Gaps = 39/324 (12%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V++ L+     QV ++  I E+  +    +G Q  +   +     + A   G   ++   
Sbjct: 401 VIDQLDAR-RAQVYIEALIVELNSNTAGNLGIQWQVANGNLFAGTNLATGTGNSIINLTA 459

Query: 244 DFSVKGVLDRF-------------------------SFETVLHALERATAIRTLAEPTLT 278
             +                                     +L AL +      L+ P L 
Sbjct: 460 AAAADASTGGLATALGASGLQQGLNVGWIHNLFGVQGLGALLQALSQTADANVLSTPNLI 519

Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +  + A    G     +T S S            +    D G+ LH  P +   G + L
Sbjct: 520 TLDNEEAKIIVGTNVPIQTGSYSNLTSSATSTAFNTFDRVDIGLTLHVKPQITDGGILKL 579

Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++ TE S  V G N        P +  R   +TV   +G  IVL GL++D+ Q     +P
Sbjct: 580 QLYTEDSAIVNGTNNSTTNPAGPEFTKRSIQSTVLCDNGEIIVLGGLMQDNYQVSNSKVP 639

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA-MRDLSRPDDHYSVEDDAKAFFF 445
           LL  IP +G LFR+ +  R +T + +   P ++      + +S     Y           
Sbjct: 640 LLGDIPWVGQLFRSEQKTRNKTNLMVFLRPVILSDRETTQAVSANRYDYIQGVQGAYRSD 699

Query: 446 NRVNKIYGPKEASEVEGQNYKGAI 469
           NRV K         +     +G +
Sbjct: 700 NRVMKDRDDPVVPPMPIGPSQGGV 723


>gi|308271769|emb|CBX28377.1| hypothetical protein N47_G37010 [uncultured Desulfobacterium sp.]
          Length = 526

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 55/269 (20%), Positives = 104/269 (38%), Gaps = 40/269 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
               Q+ +K  I E  +D  + +G Q     +                            
Sbjct: 244 RPTPQILIKANIVETTQDTARNLGIQWGGMYNPRLGNHDLWVSPGGSTNSTTPTNPISGN 303

Query: 223 ---SSGPSKSFAADFGGKFVSE------GGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
              S G +   +  FG  F +       G    + G +     E  L AL+    +  L+
Sbjct: 304 YTPSYGSTSLSSQGFGINFPASMSDAASGTLGLMFGTIGGNILEMQLSALQNNGKLNILS 363

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---SVTTHDYGVVLHFTPTVLSPGRIGL 330
            P++T +  Q+A   +G +  Y T  + T  +   SV   D  + L   P V+    + +
Sbjct: 364 SPSITTLDNQTAYTENGERIPYVTEETGTTGSITKSVKFEDVVLRLEIKPHVIDSKNLKM 423

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  + +E     N    P    ++  TT+ + +G TIV++GL K   Q  +  +P+L  
Sbjct: 424 EVLVKKNEVDNSRNVLGNPYIIKKETKTTLIVKNGETIVISGLTKQKKQDSENSVPVLRD 483

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+ G +F+ +  ++   E+ I  TP ++
Sbjct: 484 MPLFGRMFKGTGKSKSMEEVLIFITPTIL 512


>gi|192359937|ref|YP_001980940.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
 gi|190686102|gb|ACE83780.1| fimbrial assembly protein PilQ [Cellvibrio japonicus Ueda107]
          Length = 714

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/303 (19%), Positives = 116/303 (38%), Gaps = 36/303 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + +      E + + +     ++       +++  ++I    QV ++  I     
Sbjct: 411 TGSVLSERGQGIVDERTNSIIITDTADRIEAFR--RLVEQIDIPIR-QVMIESRIVIANT 467

Query: 208 DILKQIGFQHSITGSSSGPS--------------------KSFAADFGG----------- 236
           D  +Q+G +    G     S                     ++  + G            
Sbjct: 468 DFERQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNL 527

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              +  G  +V  + D    +  L ALE +     +++P +     Q A   SG +  Y+
Sbjct: 528 PVNNPAGSIAVGVLTDSVFLDMELSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQ 587

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
             S S G T     +  ++L   P +    RI + +     + V  +    +PS  V + 
Sbjct: 588 ETSPSGGTT-TGFKEAVLMLEVVPQITPDNRIIMDLFVTK-DSVGEITQQGVPSLDVTRL 645

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G T+VL G+   +  + +  +P+L  IP LG LF+ +  N+ +TE+ I  TP
Sbjct: 646 QTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTP 705

Query: 417 FLV 419
            L+
Sbjct: 706 KLI 708


>gi|307545809|ref|YP_003898288.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
 gi|307217833|emb|CBV43103.1| general secretion pathway protein D [Halomonas elongata DSM 2581]
          Length = 700

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/265 (23%), Positives = 103/265 (38%), Gaps = 31/265 (11%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244
              QV ++  IAE+     K++G Q      S   +            + G +       
Sbjct: 367 RRAQVAVEAIIAEITESRAKELGVQWLFGDISGEGTVPAGGVNFPSASTPGINQIAAAAA 426

Query: 245 -------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                                 +      SF  +L+AL   T    L+ P+LT +    A
Sbjct: 427 SQDASALGSLLGNLNGVTAGVGRLSSGGVSFAMLLNALRSDTQTNLLSTPSLTTLDNAEA 486

Query: 286 SFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           S   G +  +     TV ++    ++   D GV L+  PT+ +   I L I  EVS    
Sbjct: 487 SILVGQEVPFVTGSTTVDNTNPFQTIQREDVGVKLNIRPTIGADNSIRLEIVQEVSSIDE 546

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
           GV A D+     R+ +TTV    GG IVL GL+ D+    ++ +PLL  IP +G LFR  
Sbjct: 547 GVKASDV-VTNKREIETTVLTQDGGIIVLGGLISDENANAEQKVPLLGDIPGVGRLFRYD 605

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
           R  +++  + +     +++      
Sbjct: 606 RDTQDKRNLMVFIRARVLRDAPQTQ 630


>gi|254229258|ref|ZP_04922676.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
 gi|151938182|gb|EDN57022.1| pilus (msha type) biogenesis protein mshl, putative [Vibrio sp.
           Ex25]
          Length = 547

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 220 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 279

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV  +   Q G   S   +S G S S   +     +                 +   +F
Sbjct: 280 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 339

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
             VL  +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 340 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 399

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355
           +T    G+ L  TP + + G + L +     EVSE V  +N G         +    +R+
Sbjct: 400 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 459

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     E+TE+ I   
Sbjct: 460 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 519

Query: 416 PFLV 419
           P +V
Sbjct: 520 PTVV 523


>gi|269968038|ref|ZP_06182076.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
 gi|269827395|gb|EEZ81691.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 40B]
          Length = 546

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 219 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 278

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV  +   Q G   S   +S G S S   +     +                 +   +F
Sbjct: 279 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 338

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
             VL  +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 339 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 398

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP + + G + L +   V E    V   ++               +R+
Sbjct: 399 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 458

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     E+TE+ I   
Sbjct: 459 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 518

Query: 416 PFLV 419
           P +V
Sbjct: 519 PTVV 522


>gi|114328429|ref|YP_745586.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
 gi|114316603|gb|ABI62663.1| general secretion pathway protein D [Granulibacter bethesdensis
           CGDNIH1]
          Length = 779

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/329 (20%), Positives = 122/329 (37%), Gaps = 19/329 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG--EDQVTLKVTIAEV 205
            G +         + +     + +       S    +  +L        QV +   IAEV
Sbjct: 441 AGNMDDAGTDPNTLRIVPNTQNNAVLIFATESEYGPIETMLRKIDILPLQVRIDAIIAEV 500

Query: 206 RRDILKQIGFQHSITGSSSGPS-------KSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
             +   + G Q          +        + A+  G    +  G  +   +    S + 
Sbjct: 501 ALNDTLRYGTQFFFREGGLNSAMQTAAATAATASTGGLLAAAIPGFSNGFLLTGSSSSQL 560

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDY 312
            +  L+  T ++ L+ P L  +  + A    G    Y T  S           +V+    
Sbjct: 561 AMTLLQSVTKVQVLSSPELMVLDNEPARLQVGALVPYLTAQSQATIGQSAIINAVSYQQT 620

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVL 370
           GV+L+ TP V + G + L I  EVS+    +N   +  P+++ R   + V +  G T+ L
Sbjct: 621 GVILNVTPRVNNSGLVTLDISQEVSDVDTSINTNGISSPAFQQRSVQSRVVVQDGQTVGL 680

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL++D+  +   G+P L  +P+LG++F     NR  TE+ I  TP ++     RD    
Sbjct: 681 AGLIRDNNSRANGGVPFLKDVPVLGSVFGQQNNNRSRTELLILVTPHVIH--DQRDARAL 738

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASE 459
            +         A     +N +     A  
Sbjct: 739 TEDLRQNLRDAALVPQELNHLRPTGSADP 767


>gi|313682348|ref|YP_004060086.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155208|gb|ADR33886.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 535

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 46/242 (19%), Positives = 99/242 (40%), Gaps = 16/242 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------- 244
             QV ++  I E+     K++G ++ ++G + G +  F  +      +            
Sbjct: 256 RQQVYVRAKIIEISEGKSKEVGIKYGLSGGTVGSNGVFTFNTMLGDGTAAAVALDPSVTT 315

Query: 245 ---FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F +  +    +    +  L    A   L+EP++  I    +S   G      +  + 
Sbjct: 316 ALKFDIPTITSGIALGANIALLNTNGAAEILSEPSILCIDNLESSIYVGKTESISSGVTQ 375

Query: 302 TGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              T +T      D G+ L   P + +  ++ L +  ++ +     N   +PS   R+  
Sbjct: 376 GVGTGITQNFTRQDIGLTLKIKPRLSNDNKVLLGVNAKLEDIDSNTN-LQLPSTTKREVI 434

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T+  + +G T+++ GL+++        +P L  IP+LG LFR+     ++  + I  TP+
Sbjct: 435 TSAIVNNGETVIIGGLIREKTDHNDNRVPFLGDIPVLGHLFRDESSKTDKINLVILLTPY 494

Query: 418 LV 419
           ++
Sbjct: 495 II 496


>gi|271500445|ref|YP_003333470.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           dadantii Ech586]
 gi|270344000|gb|ACZ76765.1| type III secretion outer membrane pore, YscC/HrcC family [Dickeya
           dadantii Ech586]
          Length = 690

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/447 (14%), Positives = 139/447 (31%), Gaps = 33/447 (7%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G  + IS+  N     +   D + V++     A V   +     + + + G       +
Sbjct: 158 TGPAEYISLIRNFSQQRETKDDRRKVMIFPLRYASVSDRTIQYRDQRLVIPGVATMLNEL 217

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL--------HGMV 151
           +          +  +        +         D++ +    +   +L         G  
Sbjct: 218 MDGNRSAPAGASGAVSGMGSEGGMAQANGAGGQDAS-QAIERNARAMLARLASRASSGEA 276

Query: 152 RTIQDSQRAV-ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRRD 208
            + +   +   ++S    + +   +      ++   L++     Q  V +   I +V R 
Sbjct: 277 ASSRKKDQLNGKVSADVRNNALLIRDDEKRREEYQQLIDKIDVPQNLVNIDAIILDVDRT 336

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L ++         +     +  +     FVS           D   F   + ALE    
Sbjct: 337 ALSRLEANWQGKLGAVTGGANLMSGSSTLFVS-----------DFKRFFADIQALEGEGT 385

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              +A P++  +  Q A                    +V     G  L  TP V+  G  
Sbjct: 386 ASIVANPSVLTLENQPAVIDFSRTAFITAT--GERVANVQPVTAGTSLQVTPRVVGRGST 443

Query: 329 G-LRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             +++  ++ +  +  N     S   R    T   +     +VL G   ++     + +P
Sbjct: 444 SSIQLVIDIEDGQVETNTEGNASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDKRVP 503

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           LL  IP +G LF + +      E     TP L+            D+    +DA      
Sbjct: 504 LLGDIPWIGKLFTSRQHEVSRRERLFILTPHLIGDQNDPTRFVSVDNRRQLNDAMGRVAQ 563

Query: 447 RVNK--IYGPKEASEVEGQNYKGAIGF 471
           R +K  ++G  E +  +  + +   GF
Sbjct: 564 RNSKTDLFGMVENAMRDLASGQTPAGF 590


>gi|152990751|ref|YP_001356473.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
 gi|151422612|dbj|BAF70116.1| general secretory pathway protein D [Nitratiruptor sp. SB155-2]
          Length = 507

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 127/328 (38%), Gaps = 39/328 (11%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIA 203
           +HG++   +D  +A +      +            ++V   +  +     ++V + V+I 
Sbjct: 173 IHGILNRPEDEYQAPDPIVNINAGLITVTATKKQIERVEKYIATIQNRLHNEVMIDVSIL 232

Query: 204 EVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGG--------KFVSEGGDFSVKGVL 251
            V  +     G   S          G   +F                 +   +F+V+  +
Sbjct: 233 AVILNDQYTNGIDWSRFSLLVNGDYGADNTFTPGTNTKLLSYTREGSGTSTSNFNVQRTI 292

Query: 252 DRF-----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297
             +     +   +++ LE+   + TL+ P L  ++ Q A  + G    Y         + 
Sbjct: 293 GSYFDASVNLAGIINFLEKNGQVITLSNPKLMTLNNQPAIISIGDTINYNVPTSIVISQN 352

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDM--- 348
               T + + ++   G++L+ TP +   G I LRI   +SEP          N   +   
Sbjct: 353 GGLGTQSFTPSSVFIGILLNITPEITENGEIILRINPSISEPRDPKQLDQTTNENGIRQI 412

Query: 349 -PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    +K  + V++  G T++L GL+ +       G+P+L  IP+LG LFR+   N + 
Sbjct: 413 APDISEKKISSVVKVKDGSTLILGGLISNIKNFTINGVPVLRDIPVLGGLFRSKARNNKR 472

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHYS 435
            E+     P ++K  +  + S  D  YS
Sbjct: 473 FELVFIIKPRIIKESSTDNYSLKDLGYS 500


>gi|57238497|ref|YP_179628.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
 gi|57167301|gb|AAW36080.1| general secretory pathway protein D [Campylobacter jejuni RM1221]
          Length = 470

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/272 (24%), Positives = 108/272 (39%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQVNNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QFQNGQGFVKNLGLRVNLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    N + TEI    TP +V  V    L
Sbjct: 430 SLFKGEVLNSKATEIVFIITPSIVDSVNAPSL 461


>gi|16124428|ref|NP_418992.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|221233111|ref|YP_002515547.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
 gi|13421292|gb|AAK22160.1| general secretion pathway protein D [Caulobacter crescentus CB15]
 gi|220962283|gb|ACL93639.1| type II secretion pathway protein D [Caulobacter crescentus NA1000]
          Length = 687

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 41/324 (12%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +                                +  +V+  L++   +QV ++  + EV 
Sbjct: 319 VAATPSANGPQATIARFPGANALIINAPPETQRTLAEVIRQLDVR-REQVLVEAIVVEVT 377

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA---------------------------------AD 233
               KQ+G Q  + G++                                         A 
Sbjct: 378 DGTAKQLGVQFLLGGTNGTIPFVATNYTNATPSLLPLVGAAATTTSGADTEALKSLRDAA 437

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 + G    V G      F  +++A+++ T    L+ P++  +  + A    G + 
Sbjct: 438 VSSLLTASGVTSGVVGRSGDALFGAIINAVKKDTGSNLLSTPSIMTLDNEEARILVGQEV 497

Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347
              T       ++    ++   + G+ L   P + + G I L ++ EVS     V+    
Sbjct: 498 PITTGEVLGDSNANPFRTIQRQNVGIQLEVKPQINAGGGITLFLRQEVSSVAGPVSVGSS 557

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+ +TT  +  G  +VL GLL     Q  +  P L  +P LGALFR++   R++
Sbjct: 558 ELIINKREIETTALVDDGDIVVLGGLLDQQETQSAQRTPGLGDVPGLGALFRSTARERKK 617

Query: 408 TEIFIAATPFLVK-PVAMRDLSRP 430
           T + +   P +++     R+L+ P
Sbjct: 618 TNLMVFIRPRIIRSSADARNLTAP 641


>gi|163802893|ref|ZP_02196781.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
 gi|159173300|gb|EDP58126.1| MSHA biogenesis protein MshL [Vibrio sp. AND4]
          Length = 531

 Score =  166 bits (419), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 108/303 (35%), Gaps = 29/303 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 205 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 264

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAA-----DFGGKFVSEGGDFSVKGVLDRFSFE 257
            EV      Q G   S   +S G S S              +               +F+
Sbjct: 265 LEVTLSDGYQQGIDWSNMSASIGNSGSIVVDRSPLSLPLDAIGTLLGGQTNVTFSDGNFK 324

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
            V++ +     +  L+ P +TA + Q +    G    + T  SS               +
Sbjct: 325 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 384

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---------NAGDMPS--YRVRKA 356
           T    G+ L  TP +   G + L +   V E    +         N   +P     +R++
Sbjct: 385 TPFFSGISLDVTPQIDDKGNVFLHVHPAVIEVEEEIKKLNLGGEFNNVQLPLAKSSIRES 444

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN     ++TE+ I   P
Sbjct: 445 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 504

Query: 417 FLV 419
            +V
Sbjct: 505 TVV 507


>gi|299529630|ref|ZP_07043067.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
 gi|298722493|gb|EFI63413.1| type IV pilus secretin PilQ [Comamonas testosteroni S44]
          Length = 704

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
            QV ++  I E R    + +G +       S                       G   + 
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGSSSKFPSGNFVNL 510

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   G        FSV            L ALE     + ++ P L       A    G
Sbjct: 511 PASVSGINTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y   +   GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687

Query: 411 FIAATPF 417
            +  TP 
Sbjct: 688 LVFITPK 694


>gi|56478233|ref|YP_159822.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
 gi|56314276|emb|CAI08921.1| general secretory pathway protein D [Aromatoleum aromaticum EbN1]
          Length = 719

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 114/307 (37%), Gaps = 37/307 (12%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         +A  ++   +      +    + + V++LL+     QV ++  IAE+  
Sbjct: 337 SGNASDRGGMIQADPVNNALI--IVAPEAIYRNLRHVIDLLD-RRRAQVYIEALIAEIST 393

Query: 208 DILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----------- 253
           +   + G Q    +  G+ S  +     +FGG   +  G     G + +           
Sbjct: 394 ERAAEFGIQWQSANTPGAGSSSTFFGGTNFGGAGQNIIGAAQNIGSVGKGMNFLLGGGTV 453

Query: 254 -----------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                      F+   +   LE  +    L+ P+L  +  + A    G    + T   + 
Sbjct: 454 KVPINGQMVEVFNLSLLARFLETDSRTNILSTPSLVTLDNEGAKIVVGRNLPFITGQYTN 513

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                       ++   D G+ L   P +   G I L I  E S  V  ++    P+   
Sbjct: 514 TGGGTTPANPFQTIERRDVGLTLEVRPQISEGGAIRLDIYQEASSVVPTLDDSAGPTTNK 573

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R   +TV +  G  I L GL++DD    +E +PLL  IP  G+LFR     R +T + + 
Sbjct: 574 RSIQSTVLVDDGAIIALGGLVEDDYSSGEEKVPLLGDIPFAGSLFRYDTRRRTKTNLVVF 633

Query: 414 ATPFLVK 420
             P +++
Sbjct: 634 LRPVILR 640


>gi|160901128|ref|YP_001566710.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
 gi|160366712|gb|ABX38325.1| general secretion pathway protein D [Delftia acidovorans SPH-1]
          Length = 787

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/272 (20%), Positives = 98/272 (36%), Gaps = 38/272 (13%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--------- 241
               QV ++  I E++ + L Q G Q     S++G       +      +          
Sbjct: 432 GRRAQVLIESLIVELKDNRLAQFGVQWQAILSNNGKVLGSIGNNSSVAGANILSLLSAFN 491

Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                     + V    +   + + L+ +     L+ P L  + 
Sbjct: 492 KDGSINASGITGDTVNSMRGTNLGFTQSVNGNTTLGFLANFLQNSGDANILSTPNLMTLD 551

Query: 282 GQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            + A    G      T S +           T+V   D G++L   P +   G + L + 
Sbjct: 552 NEEARIIVGQNVPMVTGSYASNSTGGTVNPFTTVERKDVGLMLRVRPQINENGTVKLAVF 611

Query: 334 TEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            EVS          +  +   R  ++ V +  G  IVL GL+ D+  Q ++ IPLL  IP
Sbjct: 612 QEVSSVDESTRKDTNGLTTNKRSIESNVLVEDGNIIVLGGLIDDNYSQAEDRIPLLGDIP 671

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +LG LFRN+   R +T + +   P +++  A 
Sbjct: 672 VLGNLFRNTNRKRNKTNLMVFLRPVVMRDAAA 703


>gi|330012388|ref|ZP_08307367.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
 gi|328533849|gb|EGF60524.1| type IV pilus secretin PilQ [Klebsiella sp. MS 92-3]
          Length = 408

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  + S P                +        G +
Sbjct: 176 QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 235

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 236 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 295

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 296 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 355

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 356 LGGIFSQKNKTARDSVPLLGDIPVLGRLFRRDGKDNERRELVVFITPRIL 405


>gi|229530247|ref|ZP_04419635.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
 gi|229332020|gb|EEN97508.1| MSHA biogenesis protein MshL [Vibrio cholerae 12129(1)]
          Length = 559

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S    +    +  S     SV   
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|42523102|ref|NP_968482.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
 gi|39575307|emb|CAE79475.1| general secretion pathway protein D [Bdellovibrio bacteriovorus
           HD100]
          Length = 765

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 56/290 (19%), Positives = 107/290 (36%), Gaps = 30/290 (10%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           V+++    + S     +      V+N+L+      DQV ++  I E+  +     G  + 
Sbjct: 418 VKITADKTTNSLIVTASKQDYDVVLNILSKIDTPRDQVFVEAIIMEMSVNDGNSWGIGYY 477

Query: 219 ITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVL 260
             G S  G            F+S  G         +                  S    +
Sbjct: 478 QYGDSGYGKVGFNGLSNINDFLSPTGGSGAVIGFGQGKTVEVTDPVSKTTLKIPSLLGFI 537

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGG-----QHLYKTVSSSTGATSVTTHDYGVV 315
           + L+ A     L+ P L  +  Q      G      +++    +S T   +    D  + 
Sbjct: 538 NFLKTAKKANILSTPQLMTLDNQEGELEVGDKVVVGENVQNVGTSGTTVRTPQFEDATIK 597

Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA----GDMPSYRVRKADTTVELPSGGTIVL 370
           L   P +     +I + I+ +V++                   R   T + + +G T+VL
Sbjct: 598 LAIKPFISPASNQIRMEIKQQVAQLSTASTPKAFQDSTQPLAKRSLKTVINVNNGDTVVL 657

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            GL+K+  Q+    +PLL  IPI+G LF++    +++T + +  TP +V+
Sbjct: 658 GGLMKEQDQESVTKVPLLGDIPIIGWLFKSRTIVKDKTNMVVFLTPKIVR 707


>gi|283955079|ref|ZP_06372582.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793446|gb|EFC32212.1| general secretory pathway protein D [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 470

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 106/272 (38%), Gaps = 17/272 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 191 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNENHSSGINWQNFNIGLNSQANNE 250

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +  +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 251 NSFI-QLQNGQGFVKNLGLRANLNFDSIVNFLSQNGKTSVLSNPKLMALNNQQAIISVGD 309

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              Y+   SS G  + TT            G++L+  P +   G+I LRI   +S+    
Sbjct: 310 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDGKIMLRINPSLSDFKYP 369

Query: 343 VNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +           P    +K  + V++ +  T++L GL+  D    K  I  LSKIPILG
Sbjct: 370 EDNKRQKEPRTIAPDTIQKKLSSVVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILG 429

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +LF+    + + TEI    TP +V       L
Sbjct: 430 SLFKGEVLDSKATEIVFIITPSIVDSTNAPSL 461


>gi|262393141|ref|YP_003284995.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
 gi|262336735|gb|ACY50530.1| MSHA biogenesis protein MshL [Vibrio sp. Ex25]
          Length = 530

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 115/304 (37%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 203 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 262

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV  +   Q G   S   +S G S S   +     +                 +   +F
Sbjct: 263 LEVTLNDGYQQGINWSNLSASIGNSGSVVVNRPASALPPLDAIGTLLGGQTNVTISDGNF 322

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
             VL  +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 323 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 382

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGD--------MPSYRVRK 355
           +T    G+ L  TP + + G + L +     EVSE V  +N G         +    +R+
Sbjct: 383 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVSEEVKKLNLGGEFQNIQLPLAKSSIRE 442

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     E+TE+ I   
Sbjct: 443 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 502

Query: 416 PFLV 419
           P +V
Sbjct: 503 PTVV 506


>gi|85860506|ref|YP_462708.1| type IV secretion [Syntrophus aciditrophicus SB]
 gi|85723597|gb|ABC78540.1| type IV secretion [Syntrophus aciditrophicus SB]
          Length = 590

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/393 (16%), Positives = 132/393 (33%), Gaps = 57/393 (14%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
           AD+       + L  +  G + V      G       + +       +  L   +    +
Sbjct: 211 ADIRAV----LRLLAETGGVSIVAGPDVKGS------VNVHMRDVPWDQALETILDIHGL 260

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
             + + + +     V +++  ++  E+ +         +      ++ + L       Q+
Sbjct: 261 AKKEMGNVI----SVMSLEKKKKDEEVRKAAEKDQIEAEANRKKREQDL-LAEKGRLRQI 315

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
           +++  I E   + +K +G       S+   S  F A +G    +                
Sbjct: 316 SIEAKIVEASEEFIKNLGVTWGGAVSARMGSYPFQAAYGTNTRTTEGQTNPVSYPYPAGI 375

Query: 241 -----------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                                        V     +   +  + ALE  ++ + ++ P +
Sbjct: 376 GYTTSGTGAVLSQAAVNMPGSIIGTPTLGVVIGGSKAVLDVQIAALESTSSGKIISTPKV 435

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           T + G +A    G +  Y       G   V   +  + L  TP++   GRI ++I     
Sbjct: 436 TTMDGVTAKIKQGEEIPYT-TYDDKGYPRVNFKEAVLKLEVTPSITPDGRISMQINATND 494

Query: 338 EPVIGVNA--GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                     GD       + D+ V +  G TIV+ G+ K        G+P LS+IP+LG
Sbjct: 495 RGDYAKAGILGDNVPIIKNEVDSKVVVEDGTTIVIGGVSKTTDDTSTSGVPWLSRIPVLG 554

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
            LF++   +R   ++ I  TP ++  V     +
Sbjct: 555 WLFKSENTDRTRKQLLIFVTPKIIPDVEPGAAA 587


>gi|329905849|ref|ZP_08274237.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327547489|gb|EGF32305.1| Fimbrial assembly protein pilQ precursor [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 327

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 96/279 (34%), Gaps = 46/279 (16%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           K++ + ++A   QV ++  I E      K +G +   T   +           G      
Sbjct: 46  KLIQITDVATR-QVLIEARIVEADDTFSKNLGAKLGFTDLRTARGGDSGYQLSGNNRVGL 104

Query: 237 ------------------------------------KFVSEGGDFSVKGVLDRFSFETVL 260
                                                  +     S+            L
Sbjct: 105 TGNYLGVGEQTGQATITDGSFIPNSQFVSLPAAGINGLNAGSLAVSLFSAAANRFLNLEL 164

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALE     + ++ P +     Q A    G +  Y+  +SS GATSV      + L  TP
Sbjct: 165 SALEADGRGKVISSPRVVTADQQQALIEQGEEIPYQKATSS-GATSVEFKKANLKLEVTP 223

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   G I L    +V++   G  A    +   +   T V++ +GGT+VL G+       
Sbjct: 224 QITPDGNIIL--TVDVNKDSRGAPAPGGFAINTKHVKTNVQVENGGTVVLGGIFTQRELD 281

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               IP    IP++G LF+ +    ++TE+ I  TP +V
Sbjct: 282 SVTKIPFFGDIPVVGNLFKTTGRTNDKTELLIFITPKIV 320


>gi|187925905|ref|YP_001897547.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
 gi|187717099|gb|ACD18323.1| general secretion pathway protein D [Burkholderia phytofirmans
           PsJN]
          Length = 791

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 60/273 (21%), Positives = 99/273 (36%), Gaps = 38/273 (13%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V++ L+     QV L+  I E+  +    +G Q  +  +S     +         V+   
Sbjct: 402 VIDQLDAR-RAQVYLEALIVELNSNTSGNLGIQWQVANNSIFAGTNLQTGSSNSIVNLTA 460

Query: 244 DFSVKG-------------------------VLDRFSFETVLHALERATAIRTLAEPTLT 278
                G                         +        +L AL +      L+ P L 
Sbjct: 461 AAVAAGSTGGLAGALGNGTLQQGLNIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLI 520

Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +  + A    G     +T S S            +    D G+ LH  P +   G + L
Sbjct: 521 TLDNEEAKIVVGTNVPIQTGSYSNLTSATATSAFNTYDRVDVGLTLHVKPQITDGGILKL 580

Query: 331 RIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           ++ TE S  V G N        P +  R   +TV   +G  IVL GL++D+ Q     +P
Sbjct: 581 QLYTEDSAIVTGTNNAATNPAGPEFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVP 640

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LL  IP +G LFR+ +  R +T + +   P ++
Sbjct: 641 LLGDIPWIGQLFRSEQKTRNKTNLMVFLRPVII 673


>gi|54302288|ref|YP_132281.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
 gi|46915710|emb|CAG22481.1| putative pilus assembly transmembrane protein [Photobacterium
           profundum SS9]
          Length = 217

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/190 (35%), Positives = 101/190 (53%), Gaps = 12/190 (6%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            AISG+ A F SGG+      +      ++   ++GV L F PTV+S   I L +  EVS
Sbjct: 1   MAISGEEAEFISGGEFPIPVPNDEN--ITIEFKEFGVALKFIPTVMSADSINLALNIEVS 58

Query: 338 E----------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           E          P        +PS   R A TTVEL +G TI +AGLL ++I  + E +P 
Sbjct: 59  EISNQNAVSIRPSGTNTQFFVPSLSKRGAKTTVELGNGQTIGIAGLLNENITDVVEKLPG 118

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           L  +PI+G LFR+  F + ETE+ I  TP L KPV  +D++ P D++   +D + +   R
Sbjct: 119 LGDLPIIGQLFRSQSFRKGETELVILVTPRLAKPVRKQDITLPTDNFVEPNDWEYYLLGR 178

Query: 448 VNKIYGPKEA 457
           ++++   + A
Sbjct: 179 MSELKRNEPA 188


>gi|264676808|ref|YP_003276714.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
 gi|262207320|gb|ACY31418.1| type IV pilus secretin PilQ [Comamonas testosteroni CNB-2]
          Length = 704

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 51/247 (20%), Positives = 89/247 (36%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKSF 230
            QV ++  I E R    + +G +       S                       G   + 
Sbjct: 451 RQVMIEARIVEARDTFGRSLGVKFGGGAVGSNASMTSSQFLPDSSSGASTKFPSGNFVNL 510

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            A   G        FSV            L ALE     + ++ P L       A    G
Sbjct: 511 PASVSGVNTVGQVAFSVFNSSMTRFLSLELSALEAEGDGKIISNPRLVTADQNKALIEQG 570

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            ++ Y   +   GAT+++     + L  TP +   G I L +  +V++   G       +
Sbjct: 571 TEYPYSVTAP-NGATTISFKKAVLKLEVTPQITPEGDIILDL--DVNKDSRGETTTQGVA 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+ + +       +PL   +P+LG LFR++     + E+
Sbjct: 628 IDTKHVKTQVLVENGGTVVIGGIFELEETNQLNKVPLFGDLPVLGHLFRSNTKASSKREM 687

Query: 411 FIAATPF 417
            +  TP 
Sbjct: 688 LVFITPK 694


>gi|95931255|ref|ZP_01313974.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
 gi|95132691|gb|EAT14371.1| type II and III secretion system protein [Desulfuromonas
           acetoxidans DSM 684]
          Length = 665

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 66/350 (18%), Positives = 115/350 (32%), Gaps = 38/350 (10%)

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           NL  L   D   L  TL   ++         S      G +            ++   + 
Sbjct: 287 NLYYLENADAEELSKTLNEILSGIKKPATSSSAAAGGKGTIPAAAIQTNVTVSADKPTNA 346

Query: 171 SGRNQYANS--SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--SSSGP 226
              N         K ++  L+I    QV ++  I E+  D  + +G Q        + G 
Sbjct: 347 LVINATPEDYVIIKDIIKQLDIR-RKQVYVEALIMELSMDATEALGSQLQGAFEVGNEGI 405

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDR-----------------------FSFETVLHAL 263
               +    G  +S+        V                           +F  ++   
Sbjct: 406 VNLSSNSAPGGILSDPESLLTTSVNGLLAGGFSKLIGVDTDGDGVDDSQVTAFSALIKLS 465

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVV 315
           +  T +  L+ P L     + A    G      T   +            SV   D  + 
Sbjct: 466 KDDTNVNILSAPRLLTSDNEEAEIVVGRNVPIITSRLTDSTGSDSLAQSVSVERKDVALT 525

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGL 373
           L FTP +     + L +  E ++    V   +   P++  RK   TV    G T+VL GL
Sbjct: 526 LRFTPQITEGELVRLNVYQETTDLTDSVGDVNSVGPTFTTRKISNTVLARDGQTVVLGGL 585

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           +  + Q+    +PLL  IP+LG LF++      +T + +  TP ++  + 
Sbjct: 586 ISTNQQETISKVPLLGDIPLLGWLFKSKDNKEVKTNLLVFITPTIISDME 635


>gi|269104067|ref|ZP_06156764.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163965|gb|EEZ42461.1| MSHA biogenesis protein MshL [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 565

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/290 (22%), Positives = 104/290 (35%), Gaps = 35/290 (12%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  L             KK + +     + QV L+  I EV  +   Q G        S 
Sbjct: 252 QASLISVRAYPNELREVKKFLGMSEQRLKRQVILEAKILEVTLNDSYQQGINWGNITRSI 311

Query: 225 GPSKSFAADF--------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           G                       GG  +SE         +   +F  V+  L     + 
Sbjct: 312 GSGGVTIGQPSVVNPVTGLINTLPGGNDISELLGGQTNITITDGNFSAVMRFLSTQGDLN 371

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTP 320
            L+ P +TA + Q A    GG   + T  SS+             ++T    G+ L  TP
Sbjct: 372 VLSSPRVTAANNQKAVIKVGGDEYFVTNVSSSNVSGDNSTAAPDINLTPFFSGISLDVTP 431

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKADTTVELPSGGTIV 369
            +   G + L +   V +    V + ++               +R++D+ +   SG  +V
Sbjct: 432 QIDDQGGVLLHVHPAVVDVTDEVKSIELGDKFGTYQLPLAKSSIRESDSIIHAHSGDVVV 491

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + GL+K         +PLL  IP LG LFRN    +++TE+ I   P +V
Sbjct: 492 IGGLMKTSTHDQVSKVPLLGDIPGLGNLFRNINKVQQKTELVILLKPTVV 541


>gi|254418127|ref|ZP_05031851.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
 gi|196184304|gb|EDX79280.1| general secretion pathway protein D [Brevundimonas sp. BAL3]
          Length = 718

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/373 (15%), Positives = 110/373 (29%), Gaps = 48/373 (12%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +    V                            +   V+  L++    QV ++  + 
Sbjct: 330 GAIGSSTVTATGQRATIARFPGANALVIAGPADMQRTLADVIRRLDVR-RQQVLIEAIVV 388

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------------------ 233
           E+  + ++++G Q    G +     ++ A+                              
Sbjct: 389 ELSDNAVRELGVQWLYGGENGVGLTNYTANATPLVNMAGGAYAGQLDKDDPLREQLQTLA 448

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                 + G        +    F  +++A +       L  P++  +  + A+F  G + 
Sbjct: 449 LNSLVGANGFIGGAGVEVGDGLFGFIINAAKTDKGSNLLQTPSIMTLDNEEATFLVGQEV 508

Query: 294 LYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGD 347
              T       +S   T+    D GV L   P + + G I L ++ EVS    G+     
Sbjct: 509 PITTGQTLLDGNSNPFTTTDRKDIGVRLTVKPQINAGGSITLTLRQEVSAINGGLTRGAT 568

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                 R+  TT+ +  G   V  GLL  +     + IP L  +P +GALFR++   R  
Sbjct: 569 DLVLDKRELQTTLVVDDGDIAVAGGLLDQNDIISTDKIPGLGDLPGVGALFRSNSRQRGR 628

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH----------YSVEDDAKAFFFNRVNKIYGPKEA 457
           T + +   P +V+           D              + +       R         A
Sbjct: 629 TNLMVFLRPTIVR-TREEAQGLAADRWGYMRDQQQAVQPDREPSLDALVRDYMRTQAPAA 687

Query: 458 SEVEGQNYKGAIG 470
                       G
Sbjct: 688 PATGQPMVIAPTG 700


>gi|262191511|ref|ZP_06049695.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
 gi|262032609|gb|EEY51163.1| type II secretory pathway component PulD [Vibrio cholerae CT
           5369-93]
          Length = 559

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S    +    +  S     SV   
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
            T  SS          + +  +T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 344 -----NAGDMPS--YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   ++P     +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLAKSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|229521807|ref|ZP_04411225.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
 gi|229341401|gb|EEO06405.1| general secretion pathway protein D [Vibrio cholerae TM 11079-80]
          Length = 674

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 67/452 (14%), Positives = 145/452 (32%), Gaps = 82/452 (18%)

Query: 49  KISIGLNKVIIL-QVPVDVQDVLVSDPTKADVVVHSPRT----MYLFGKNVGQANVILIG 103
            I +   +  ++ ++   ++ V  +   + +VV  +  +    + +        +     
Sbjct: 162 NIILITGRAAVVNRLAEIIRRVDQAGDKEIEVVELNNASAAEMVRIVEALNKTTDAQNTP 221

Query: 104 HDGKQMLNLDILIERDI----AHLEMTLRRFIADSNIRVEMVSDTVVL------------ 147
              K     D      +      +   L+R I   ++ +    +  V+            
Sbjct: 222 EFLKPKFVADERTNSILISGDPKVRERLKRLIKQLDVEMATKGNNRVVYLKYAKAEDLVE 281

Query: 148 ------------HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK---VMNLLNIAG 192
                        G  +     +  V ++    + S               V+  L+I  
Sbjct: 282 VLKGVSENLQAEKGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLDVIGQLDIR- 340

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------- 237
             QV ++  I E+       +G Q     S S           G                
Sbjct: 341 RAQVLIEALIVEMAEGDGINLGVQWGSLDSGSVIQYGNTGASIGNVMIGLEEAKEKTVTD 400

Query: 238 ------------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                                     +          +    +  +++A+   ++   L+
Sbjct: 401 SRWNSVTQTYEPYTRTESGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILS 460

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVLSPGRI 328
            P++T +    ASF  G +    T SS          +V   + G+ L   P +     +
Sbjct: 461 SPSITVMDNGEASFIVGEEVPVITGSSAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSV 520

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L+I+ EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL
Sbjct: 521 QLKIEQEVSNVLGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLL 579

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP+LG LFR++    E+  + +   P +++
Sbjct: 580 GDIPLLGQLFRSTSSQVEKKNLMVFIKPTIIR 611


>gi|189424346|ref|YP_001951523.1| general secretion pathway protein D [Geobacter lovleyi SZ]
 gi|189420605|gb|ACD95003.1| general secretion pathway protein D [Geobacter lovleyi SZ]
          Length = 648

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/421 (20%), Positives = 147/421 (34%), Gaps = 52/421 (12%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV--------EMVSDTVV 146
           G   V+        +L      ++DI  L   L     +++ ++        +      V
Sbjct: 230 GAVQVLADTRLNAVLLFGPEKDKKDIRSLIAQLDVTPPEASSKINVCFLENTDATEMAKV 289

Query: 147 LHGMV------RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM--------NLLNI-- 190
           L G+V       T   +      S  F S         +S+  V+        NLL +  
Sbjct: 290 LDGVVKGITAQTTTLQAGTVSAQSSPFDSGKVTITADKASNSLVVMASPTDYNNLLQVIK 349

Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----------GSSSGPSKSFAADFGG 236
                  QV ++V IAE+     + +G Q               G    P  +F +  G 
Sbjct: 350 KLDRRSKQVFVQVLIAEISPSKSRDLGVQSGAFAVGALGKYLQGGGIYDPFNTFGSLLGS 409

Query: 237 KFVSEGGDFSVKGVLDRFS----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
              +      +   L   S       +L ALE    +  L+ P +     + A    G  
Sbjct: 410 GSSTSPLSTLIADKLKNTSKPVTGAAILQALESEGMLNILSTPNILTTDNKEAEINVGEN 469

Query: 293 HLYKTVSSSTGA---TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
             +K+ S+ +      SV   D G+ L   P V     I + +  E+S            
Sbjct: 470 VPFKSSSTQSTFGTTESVERKDIGINLKIKPQVSEGDYIRMDLYQEISAVKSDKGDAVDL 529

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T+V +    TIV+ GL++D      + +PLL  IP LG  F+ +   R++T 
Sbjct: 530 VTTKRSAKTSVVVKDNETIVIGGLIQDTEDNTIQKVPLLGDIPGLGWFFKTTTKTRKKTN 589

Query: 410 IFIAATPFLVKPVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           + I  TP +VK    RDL+   +     ++     +    N  N+I G       +GQ  
Sbjct: 590 LLIMLTPQVVK--DARDLASITESQKGKFTEAA-KEFGPLNVQNEISGKATKPVSQGQES 646

Query: 466 K 466
           +
Sbjct: 647 R 647


>gi|91225619|ref|ZP_01260693.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
 gi|91189739|gb|EAS76013.1| MSHA biogenesis protein MshL [Vibrio alginolyticus 12G01]
          Length = 529

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 64/304 (21%), Positives = 111/304 (36%), Gaps = 30/304 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 202 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDDIREVREFLGVSQERMQRQVILEAKI 261

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSF 256
            EV  +   Q G   S   +S G S S   +     +                 +   +F
Sbjct: 262 LEVTLNDGYQQGINWSNLSASIGNSGSIVVNRPASTLPPLDAIGTLLGGQTNVTISDGNF 321

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATS 306
             VL  +     +  L+ P +TA + Q +    G    + T  SS               
Sbjct: 322 NAVLSFMSTQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVE 381

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRK 355
           +T    G+ L  TP + + G + L +   V E    V   ++               +R+
Sbjct: 382 LTPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVTEEVKQLNLGGDFQNIQLPLAKSSIRE 441

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +D+ +    G  +V+ GL+K   ++L   +P L  +P LG LFRN     E+TE+ I   
Sbjct: 442 SDSVIRAKDGDVVVIGGLMKQQNRELVSKVPFLGDVPALGHLFRNVNNVTEKTELVILLK 501

Query: 416 PFLV 419
           P +V
Sbjct: 502 PTVV 505


>gi|296273826|ref|YP_003656457.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
 gi|296098000|gb|ADG93950.1| type II and III secretion system protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 468

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 118/261 (45%), Gaps = 16/261 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             ++      KK +N ++I+   Q+ +K  I E+     K++G ++ + G +   S + +
Sbjct: 152 VGSKSDTEIIKKFINKIDISNP-QIYIKAKIVEISETKTKEVGLEYGLNGFNKYSSTNLS 210

Query: 232 ADFGGKFVS----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                  F +  +    +    ++ L++  AI  ++EP++  I+
Sbjct: 211 TFSSSFNSLSNTAINFSEFSTFGFDLNSLSKGLNLSATINFLKQNQAIDVISEPSILCIN 270

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            + +S   G    +KT  ++  + +       + G+ L   P  +S  +I L+I T + +
Sbjct: 271 NKESSIYVGETKSFKTGQTTNTSGTTESFKREEVGLRLKVKPR-ISDNKIILQINTVLED 329

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 + ++     ++  TT  L +  ++++ GL+K    Q + G+P+L  IPILG LF
Sbjct: 330 VKESTTSENL-DTSKKEVITTAILNNAESVIIGGLIKTKKFQTESGLPVLKDIPILGTLF 388

Query: 399 RNSRFNREETEIFIAATPFLV 419
           +N ++  ++  + +  TP++V
Sbjct: 389 KNEKYINDKMNLVVIITPYIV 409


>gi|119773310|ref|YP_926050.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
 gi|119765810|gb|ABL98380.1| type II and III secretion system protein [Shewanella amazonensis
           SB2B]
          Length = 703

 Score =  165 bits (417), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 58/284 (20%), Positives = 105/284 (36%), Gaps = 48/284 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------ 235
           + V+N L+I    QV ++  I EV        G Q +          +     G      
Sbjct: 340 ESVINQLDIR-RAQVLVEAIIVEVAEGDDVGFGVQWATESGGGTQFNNLGPTIGEIGAGI 398

Query: 236 ---------------------------------GKFVSEGGDFSVKGVLDRFSFETVLHA 262
                                                + G    +   +    F  ++ A
Sbjct: 399 WQARGEEASEVTTIDGNGNPIVSKNPEKRGDITLLAQALGKVNGMAWGVAMGDFGALIQA 458

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVL 316
           +   T    LA P++T +  Q A+F  G +    T +       S    +V   + GV L
Sbjct: 459 VSSDTNSNVLATPSITTLDNQEAAFIVGDEVPVLTGAQNSSNGNSNPFQTVERKEVGVKL 518

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
             TP +     + L I+ EVS            ++  R+  TTV   SG  +VL GL+ +
Sbjct: 519 KVTPQINEGNAVKLAIEQEVSGINGKTGVD--VTFATRRLTTTVMADSGQIVVLGGLINE 576

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++Q+  + +P+L  IP+LG LF++S   +++  + +   P +++
Sbjct: 577 EVQESVQKVPILGDIPLLGHLFKSSSSGKKKKNLMVFIKPTIIR 620


>gi|262377049|ref|ZP_06070275.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
 gi|262308087|gb|EEY89224.1| general secretion pathway protein D [Acinetobacter lwoffii SH145]
          Length = 710

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 102/291 (35%), Gaps = 37/291 (12%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + T        Q      + +++LL++  + QV ++  I     +  K++G +  I    
Sbjct: 414 ARTNTLIVNDTQPFIDKIRNMVDLLDVQVK-QVMVEARIVRASTEFAKEMGVKWGILSQG 472

Query: 224 SGPSKSFAADFG---------------------------------GKFVSEGGDFSVKGV 250
              +                                         G   + G        
Sbjct: 473 ITNNDHLLVGGSDTTLWDLRTPEINSTTGIPTYEIQRPDNLNVDLGVENAAGRIAFGLIS 532

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVT 308
           L  F  +  L AL+       ++ P +     Q A+  SG +  Y++   S      +  
Sbjct: 533 LSDFMLDLELSALQADGYGEVISTPKVLTADKQKATVESGVEVPYQSTEGSGANATATTE 592

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D  + L  TP++   G++ + +    S+ + GV           + +T V + +G T+
Sbjct: 593 FKDVVLKLDVTPSITPDGKVQMSLDIS-SDSIAGVTPMGEYYLNKNRLNTNVLVENGETV 651

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           VL G+ + +    +  +P L  IP LG LFR    +  + E+ I  TP +V
Sbjct: 652 VLGGIFEQETLNNQTKVPFLGDIPYLGRLFRKDVKSDNKRELLIFVTPRIV 702


>gi|254225450|ref|ZP_04919061.1| general secretion pathway protein D [Vibrio cholerae V51]
 gi|125622084|gb|EAZ50407.1| general secretion pathway protein D [Vibrio cholerae V51]
          Length = 675

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S           +  +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S S           G                            
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412

Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +  G       +    +  +++A+   ++   L+ P++T +    
Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|269214941|ref|ZP_06158925.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
 gi|269208722|gb|EEZ75177.1| type IV pilus secretin PilQ [Neisseria lactamica ATCC 23970]
          Length = 254

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 94/246 (38%), Gaps = 22/246 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAAD---------FGGK 237
            ++  I E      + +G +   TG             G +  F                
Sbjct: 1   MIEARIVEAADGFSRDLGVKFGATGKKKLKDADRAFGWGVNSGFEGGDGKWSAQTSINLP 60

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +     S+   +   +    L A E  +  +TLA P +   + + A   SG +  Y+ 
Sbjct: 61  VAAAANSISLVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGTEIPYQD 120

Query: 298 VSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVR 354
            SSS  ++S T       + L  TP +   G+I + ++     PV   V        + +
Sbjct: 121 TSSSGSSSSTTTTFKKAVLGLTVTPNITPDGQIIMTVKINKDTPVDCTVKDETTKCIQTK 180

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
             +T   + +GGT+++ G+ +++       +PLL  IP++G LF+    +    E+ I  
Sbjct: 181 NLNTQAMVENGGTLIVGGIYEEENGNTLTKVPLLGDIPVIGNLFKTRGKSTNRRELLIFI 240

Query: 415 TPFLVK 420
           TP ++ 
Sbjct: 241 TPRIMD 246


>gi|229512666|ref|ZP_04402135.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
 gi|229350343|gb|EEO15294.1| MSHA biogenesis protein MshL [Vibrio cholerae TMA 21]
          Length = 559

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/263 (23%), Positives = 97/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   S   SS+G S    +    +  S     SV   
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYKIGSGAITQDSSGNPITSVLPG 332

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          + +  +T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDISSVVGSGDNAQASPSIKITPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|119505541|ref|ZP_01627613.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
 gi|119458650|gb|EAW39753.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2080]
          Length = 723

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/368 (17%), Positives = 124/368 (33%), Gaps = 72/368 (19%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             + +  I I    A   + L    ++    +     +VV+     +I  +  A +L+E 
Sbjct: 367 APLQSEFIRIRYAKASEVVNLFEAGSEEGGSLVSDRGSVVVDERTNSIIITDTATKLAEI 426

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                          + ++  +++    QV ++  I     ++ +++G +          
Sbjct: 427 ---------------RDLIERVDVPIR-QVMIEARIVIASTNLDEELGIEWGGGYIGIDS 470

Query: 227 SKSFAADFGG-------------------------------------------------- 236
           S        G                                                  
Sbjct: 471 SNGNIYSASGSREQVVSFNQDTVAGVTPTLNYPVQGGQQQGGNQGGDGQQQQQGLGAALV 530

Query: 237 --KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                     F+V    +       L ALE +     +++P +     Q A+  SG +  
Sbjct: 531 DLGVSQATSGFAVGFTSNDLFLTAELSALESSGQGEVVSQPKIITGDKQLATIKSGSEIP 590

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
           Y+  ++S GAT+V+  +  + L  TP +    RI L +        + V     G +P+ 
Sbjct: 591 YQEGAAS-GATTVSFKEAVLKLEVTPNITPDDRILLDLVVNQDSLGDLVPSGTGGLIPTI 649

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
              +  T V + +G T+VL G+ ++D       +P L  IP LG LF+N+     +TE  
Sbjct: 650 NTTQLTTQVLVGNGETVVLGGVFQNDEITQIRKVPFLGDIPYLGTLFKNTASKTSKTETL 709

Query: 412 IAATPFLV 419
           I  TP ++
Sbjct: 710 IFITPRIL 717


>gi|262163787|ref|ZP_06031527.1| S-protein secretion component D [Vibrio mimicus VM223]
 gi|262027767|gb|EEY46432.1| S-protein secretion component D [Vibrio mimicus VM223]
          Length = 713

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 67/280 (23%), Positives = 107/280 (38%), Gaps = 22/280 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
               + +Q       +       S       +  ++++ LL        QV ++ TIAE+
Sbjct: 421 SKSNKDMQVVTENYRVVVDSKRNSIFFTGEYADYQRLVELLRFVDKRPQQVLIQATIAEI 480

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             D  +Q G    IT  +        A F    +S  G F                A  +
Sbjct: 481 NIDDAQQFGVDFDITSGTITGGTKGLAGFDNGVLSLTGVFG--------DVTMGFRAALK 532

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFT 319
               + L+ P + A++ ++A  T G Q    T   S G       T+    D GV L   
Sbjct: 533 TGKAQVLSSPRIIAMNQEAARITVGDQIQVVTGEVSGGGDDSKATTTYKYVDTGVTLDII 592

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           PT+   G + L I  EVS    G +         R   T +   SG T+ + GL+K DI 
Sbjct: 593 PTINQNGLVELEISQEVSNKGTGTD------INKRSLQTKLLADSGDTVFMGGLIKQDIG 646

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    +PLL  IP LG LF+     ++  E+ +  TP+++
Sbjct: 647 ETDNRVPLLGDIPYLGNLFKYKSQTQKSVELVLLITPYVI 686


>gi|171463462|ref|YP_001797575.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193000|gb|ACB43961.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 509

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 100/251 (39%), Gaps = 18/251 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+++ L+I    +V ++  I E   D   ++G +     ++   + +      G  V + 
Sbjct: 262 KLISKLDIRT-QEVLIEAFIVEADDDWQYELGSRFGYRNTTGNGTSTNPTSAVGGAVGDL 320

Query: 243 GDFSVKGV--------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
            + ++                       +  L A+E+ + ++ ++ P +  +  + A   
Sbjct: 321 ANANIFSRPVTGAPFGLGYLFQTTASQLKVELTAMEKLSLVKIISNPHVFTMDNEEAVVI 380

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            G Q  Y      T   +    D  + L  TP+++  G + L +      P    +    
Sbjct: 381 DGVQIPYPVPGVGTNQITYEFKDAALKLTATPSIVGDGNLFLNMIVNKDSPNYSTSP--- 437

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS   R+  + + +  G   V+ G+     +   E +PLL  IP+LG+LF  +R   ++T
Sbjct: 438 PSINKREVRSKLLIQDGTIAVIGGIYDQTKENTVEKVPLLGSIPLLGSLFSYTRKADKKT 497

Query: 409 EIFIAATPFLV 419
           ++ +   P ++
Sbjct: 498 QLLVFIAPKIL 508


>gi|315637872|ref|ZP_07893062.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
 gi|315482113|gb|EFU72727.1| general secretory pathway protein D [Campylobacter upsaliensis
           JV21]
          Length = 468

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +  L    + QV + V+I  V  +     G            +     +   +  S 
Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFASTTQNGQNSFIQLQSG 256

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G     G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS
Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSSPKLMALNNQQAIISVGDTINYQVKESS 316

Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347
            G  + TT            G++L   P +    +I LRI   +S+     +        
Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376

Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    +K  T V + +  T++L GL+  +  +    +  LSKIP+LG LF     + 
Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVNFLSKIPLLGLLFSGDETSS 436

Query: 406 EETEIFIAATPFLVK 420
             TEI    TP +V 
Sbjct: 437 NSTEIVFIITPSIVD 451


>gi|332994893|gb|AEF04948.1| pilus (MSHA type) biogenesis protein MshL [Alteromonas sp. SN2]
          Length = 557

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 95/250 (38%), Gaps = 23/250 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---SKSFAADFGGKFVSEGGDFSVKG 249
             QV L+  I EV  +   Q G   +   +++G    S S  A   G  +S         
Sbjct: 285 TKQVILEARILEVELNDGYQQGINWNEILANTGNTDFSLSTTAGTLGNDISATLGGVTSL 344

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------- 301
                 F  VL  L     ++ L+ P +TAI+ Q A    G    + T  SS        
Sbjct: 345 AFLNKDFSGVLSLLSTQGNVQVLSSPRVTAINNQKAVIKVGDDEYFVTDVSSDSTVTSTT 404

Query: 302 ---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MP 349
              +    +T    G+ L  TP +   G + L +   V E                  + 
Sbjct: 405 TSISPDIELTPFFSGIALDVTPQIDDKGTVLLHVHPSVIETAEQQKVVTMDDEQIVLPLA 464

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R++DT +   SG  +V+ GL++     +    PLL  IP+ G LF+N + +  + E
Sbjct: 465 QSTIRESDTIIRAGSGEIVVIGGLMQTSQTDVVSKTPLLGDIPLFGELFKNRQVSETKKE 524

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 525 LIILLKPTVV 534


>gi|325922269|ref|ZP_08184050.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
 gi|325547222|gb|EGD18295.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           gardneri ATCC 19865]
          Length = 620

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 97/267 (36%), Gaps = 33/267 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
              DQV ++  I        + +G +  I G                           + 
Sbjct: 352 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTGVISGSTANNVSIINDGLHNV 411

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               +F    G    S  G  +   +   F+ +  L A++       ++ P +   + + 
Sbjct: 412 PAGLNFNLPAGTFTTSTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 471

Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVS 337
                G +     +           +V   +  + L  TPT+ +  R+ L +     EV+
Sbjct: 472 GVIKQGREIGYVTITAASGGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 531

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             ++    G +P    R+ +T V +  G T+V+ G+ +   ++    +P L  IP LG L
Sbjct: 532 RFIVLDGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVSKVPFLGDIPFLGNL 591

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
           F+    ++E+ E+ +  TP +++  + 
Sbjct: 592 FKKRGRSKEKAELLVFVTPKVLRVASA 618


>gi|262190137|ref|ZP_06048422.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
 gi|262033978|gb|EEY52433.1| general secretion pathway protein D precursor (Cholera toxin
           secretion protein epsD) [Vibrio cholerae CT 5369-93]
          Length = 675

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 113/321 (35%), Gaps = 50/321 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S           +  +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S S           G                            
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTEKKPIRNSETGEIKY 412

Query: 238 -------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +  G       +    +  +++A+   ++   L+ P++T +    
Sbjct: 413 YEETTTKGDYSKLASALSGLQGAAVSIALGDWTALINAVSNDSSSNILSSPSITVMDNGE 472

Query: 285 ASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           ASF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  
Sbjct: 473 ASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNV 532

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR
Sbjct: 533 LGANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFR 591

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++    E+  + +   P +++
Sbjct: 592 STSSQVEKKNLMVFIKPTIIR 612


>gi|167564371|ref|ZP_02357287.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 521

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
             +     L      Q   ++  +  +    NLL +                      QV
Sbjct: 227 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQIADLIGKLDTPSRQV 286

Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
            ++  I E  R   + +G +              +    +G      A   G F +    
Sbjct: 287 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 346

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 347 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 405

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  ++++  +G      P+   +   T VE+ +
Sbjct: 406 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 463

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 464 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 518


>gi|170740267|ref|YP_001768922.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
 gi|168194541|gb|ACA16488.1| general secretion pathway protein D [Methylobacterium sp. 4-46]
          Length = 779

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 64/245 (26%), Positives = 120/245 (48%), Gaps = 17/245 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV + VTIAEV+ +   + G Q  +   S G  ++  +  G    +  G  +V   
Sbjct: 503 AVPAQVAVNVTIAEVKLNDELKHGVQFFLDSRSLGLGRNKGS-VGLVSAAASGASNVLKP 561

Query: 251 LDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            + F+F        + V++AL+  T ++ L+ P+L  +  Q A+   G      T  + +
Sbjct: 562 GNGFNFLVGGYSGPDVVINALDGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQS 621

Query: 303 GA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                      V   D G++L+  P +     + ++I+ E+S  V G +    P+   R+
Sbjct: 622 VDFANAPLINQVEFRDTGIILNVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRR 680

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +T+ + +G T++LAGL+ D  Q+ ++GIP+L ++P +GALF ++    E TE+ +   
Sbjct: 681 VASTISVANGQTVLLAGLISDKHQRERDGIPILGRLPQIGALFSSTNNADERTELVVFIR 740

Query: 416 PFLVK 420
           P +V+
Sbjct: 741 PVVVR 745


>gi|83720708|ref|YP_443529.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|257137686|ref|ZP_05585948.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83654533|gb|ABC38596.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 576

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
             +     L     +Q   ++  +  +    NLL +                      QV
Sbjct: 282 ARAADVQRLLSGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 341

Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
            ++  I E  R   + +G +              +    +G      A     F +    
Sbjct: 342 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 401

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 402 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 460

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ +
Sbjct: 461 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 518

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 519 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 573


>gi|261209946|ref|ZP_05924246.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
 gi|260841011|gb|EEX67543.1| MSHA biogenesis protein MshL [Vibrio sp. RC341]
          Length = 551

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/263 (22%), Positives = 97/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV L+  I EV      + G   S   S++G +         +  +     S+   
Sbjct: 265 RMQRQVILEAKILEVTLSDGYEQGINWSKAFSANGTNYQIGTGTIAQDTNGNPISSILPG 324

Query: 251 LD---------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           LD                 SFE VL  +     +  L+ P +TA + Q A    G    Y
Sbjct: 325 LDAIGTLLGGQSNVVVSSGSFEAVLSFMSTQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 384

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 385 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDKGNVLLHVHPAVIEVEQQTKR 444

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 445 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDRVAKVPFLGDVPGLGH 504

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 505 LFRNTSKQTQKTELVILLKPTVV 527


>gi|146305583|ref|YP_001186048.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
 gi|145573784|gb|ABP83316.1| type IV pilus secretin PilQ [Pseudomonas mendocina ymp]
          Length = 706

 Score =  165 bits (417), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 93/270 (34%), Gaps = 36/270 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------ 236
           +++  L+I    QV ++  I E   D  K +G +   +  +     S      G      
Sbjct: 429 RIVAQLDIPVR-QVMIEARIVEANVDYDKALGVRWGGSVRNGAWDVSGKDGVQGFDKDTG 487

Query: 237 ----------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                                          +     ++  +      +  L A+E+   
Sbjct: 488 VRAPFVGTDTIGRTTLEDGLARLPFVDMGVQNSTSGIAIGYLGSNIVLDLQLSAMEKTGN 547

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
              +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI
Sbjct: 548 GEIVSQPKVVTSDKETAKILKGQEVPYQEASSSGATST-SFKEAALALEVTPQITPDNRI 606

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + ++     P        +P     + +  V +  G TIV+ G+  +      E +P L
Sbjct: 607 IMEVKVTKDAPDFANLVNGVPPLNKNEVNAKVLVNDGETIVIGGVFSNTQTNAVEKVPFL 666

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFL 418
             +P LG +FR       + E+ +  TP +
Sbjct: 667 GDLPFLGRVFRRDIVRDNKAELLVFITPRI 696


>gi|297570248|ref|YP_003691592.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926163|gb|ADH86973.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 532

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 59/310 (19%), Positives = 110/310 (35%), Gaps = 27/310 (8%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------ 186
           D  ++      T   +G V T +           +           ++ + ++N      
Sbjct: 227 DETVQTTPAPGT---NGEVTTTRRRD-VKGAKGYYAIDKPIGLITVNAPRPLVNKIEEYL 282

Query: 187 -LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV-SEGGD 244
             L      Q++++  I EV  D   + G       S    +       G  +     G 
Sbjct: 283 DNLKSRLFRQISIEAKIVEVNLDEQHKSGIDWRGVLSGKHLNFELFGPEGIIYPWDAAGG 342

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              +  +    F+ +L A+E   A   LA P ++ ++GQ A  T G    Y +   +T  
Sbjct: 343 GVTQATIGPNPFQVLLDAIETQGAADVLANPKISVMNGQPALITVGETFRYISQVETTTD 402

Query: 305 T--------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMP 349
           T        +  T   G+ L   PT+     I L +    S                 +P
Sbjct: 403 TGGGISTSVTTDTVMSGLGLAVLPTITDQNEIVLSLTPVTSSLTQPMQERTFQGMTVQLP 462

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              +R+ ++ V++  G T+++ GL+ +        +P+L  IPILG LF +      + E
Sbjct: 463 QINIRELNSVVKVRDGDTLMIGGLIDNVQDSTSHRVPILGNIPILGKLFSHETKTSRKRE 522

Query: 410 IFIAATPFLV 419
           + I   P ++
Sbjct: 523 LVILLQPTII 532


>gi|119503108|ref|ZP_01625193.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
 gi|119461454|gb|EAW42544.1| general secretory pathway protein D precursor [marine gamma
           proteobacterium HTCC2080]
          Length = 743

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 101/237 (42%), Gaps = 13/237 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVL 251
             QV ++ +I EV  +   + G + +      G   S       G+F   G +  V  +L
Sbjct: 481 PTQVLIEASIVEVSLNDQLKYGLEWTFNNQIGGSDYSGIGAISDGEFNVAGAEGPVAQLL 540

Query: 252 DRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300
                      +  VL+AL   + +  ++ P++  +    A+   G Q          + 
Sbjct: 541 KGQLCSFKWCDYVAVLNALATESLVNVISTPSVMVLDNNVATINVGDQVPINSGSTITNG 600

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +++  D GV L   P+V + G + L +   V++ V  ++      +  R  ++ V
Sbjct: 601 GNTIQNISYKDTGVQLTVRPSVNAGGLVTLDVLQTVTD-VGNIDVTGNRRFLERSIESRV 659

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            + SG ++VL GL++++    + G+P   K PI+G LF  +   R+ TE+ +  TP 
Sbjct: 660 AVRSGESVVLGGLIRENAANNENGVPWFYKAPIIGPLFGTTEKKRDRTELLVIITPR 716


>gi|83648610|ref|YP_437045.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
 gi|83636653|gb|ABC32620.1| type 4 fimbrial biogenesis protein PilQ [Hahella chejuensis KCTC
           2396]
          Length = 720

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 98/272 (36%), Gaps = 50/272 (18%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI----------------------------------- 219
           QV ++  I   R D ++++G Q                                      
Sbjct: 445 QVLIEARIVRARSDAVEELGVQWGGTRVAGNDDSGQILIGGGMESNIEASNEIARFNTEL 504

Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                        G +     S  A   G   +     ++         +  L A E   
Sbjct: 505 LNNRNSGDTTIPDGPTLATFPSALAVDLGVTRANTSGLAIGFSKGSTLLQMELSAFESDG 564

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A+P +     Q+A   SG +  Y+   SS+GATSV+     + L  TP +    +
Sbjct: 565 KGEIVAQPKIVTADRQTARIESGEEIPYQEA-SSSGATSVSFKKAVLSLEVTPQITPDDK 623

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I + +   +++   GV   ++PS    + +T V + +G TIVL G+   +        P 
Sbjct: 624 IIMDLV--INQDSRGVVTANIPSIDTNEIETQVLVGNGETIVLGGIFTSEQSSTVTKTPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LG LFR +    E +E+ +  TP L+
Sbjct: 682 LGDIPYLGRLFRKTENVNERSELLVFITPKLI 713


>gi|109899541|ref|YP_662796.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
 gi|109701822|gb|ABG41742.1| type II and III secretion system protein [Pseudoalteromonas
           atlantica T6c]
          Length = 711

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/242 (23%), Positives = 105/242 (43%), Gaps = 12/242 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V +AEV+ +  +  G +     S      + +   G    + G + ++        
Sbjct: 452 VMVEVILAEVQLNDSEDTGVEWLANSSLGRFGITSSTIGGLGLGASGFNMTLD---SAGQ 508

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVT 308
              +L+   +       + P L   SG  AS   G +    T +S +          +++
Sbjct: 509 TRAMLNLFYKNEKANIRSRPRLMVKSGGEASIDVGNEIPVITSNSQSTTDSDAVVLQTIS 568

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
               GV+L   PTV + G + + I  E+SE     ++  D P+   RK  TTV L  GG+
Sbjct: 569 YRKTGVLLEVKPTVHASGFVDIEITQELSEATETSSSDIDSPTILNRKISTTVTLRDGGS 628

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRD 426
           ++L GL+        +G+P+L ++P++G LF      ++ TE+ I   P+++  P     
Sbjct: 629 VLLGGLISSTTSTGTQGVPILGRLPMIGKLFSTDSNAQDRTELMIMIIPYILNSPDEAEQ 688

Query: 427 LS 428
           L+
Sbjct: 689 LT 690


>gi|264676762|ref|YP_003276668.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
 gi|262207274|gb|ACY31372.1| general secretion pathway protein D [Comamonas testosteroni CNB-2]
          Length = 793

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +             T               + V++ L+     QV ++  I EV  D
Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445

Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
              Q+G Q S                       +  G S +      G  +++    ++ 
Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505

Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           G           V    S   +++ ++       L+ P L  +  + AS   G    + T
Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565

Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
            S +            T+    D G +L   P +   G I + +  E S    G  NA  
Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   R  ++ V +  G  +VL GL+ D+  Q +E +PLL  IP+LG LFRN+   R++
Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 685

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
           T + +   P +++           D Y
Sbjct: 686 TNLMVFLRPTVLRDANSTS-QLSQDRY 711


>gi|323494823|ref|ZP_08099920.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
 gi|323310931|gb|EGA64098.1| type IV pilus assembly protein PilQ [Vibrio brasiliensis LMG 20546]
          Length = 389

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/260 (21%), Positives = 113/260 (43%), Gaps = 22/260 (8%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
           + K+++  L++A + QV ++  I  V    L+++G +  +  +++  ++           
Sbjct: 130 AVKQIVRSLDVAVK-QVQIEARIVTVDEGQLEELGVRWGLNQNNNSRNRIAGGIEVNNLD 188

Query: 233 -----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                             +    F +  +      +  L A++       ++ P L   +
Sbjct: 189 QSSLDDRLNVNLGATSVNAASVAFRLATLGSDVLLDLELSAMQTEAKAEVISRPKLMTTN 248

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
            Q+A    G +  Y   SS  GA+SV      + L  TP +LS  R+ L +      P  
Sbjct: 249 KQAAYIEQGSEIPY-FESSENGASSVAFKKAVLSLKVTPQILSDDRLILDLSVTQDRPGN 307

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V+   +G+  +   ++ DT V + +G T+VL G+ +  +    + +PL   +P++G+LFR
Sbjct: 308 VVKTGSGEAVAINTQRIDTQVLVNNGQTVVLGGIYQHSVTDAVDKVPLFGDLPLIGSLFR 367

Query: 400 NSRFNREETEIFIAATPFLV 419
            S  N  ++E+ I  TP +V
Sbjct: 368 RSYQNIAKSELLIFVTPTIV 387


>gi|312795821|ref|YP_004028743.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
 gi|312167596|emb|CBW74599.1| Fimbrial assembly protein pilQ precursor [Burkholderia rhizoxinica
           HKI 454]
          Length = 655

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/364 (16%), Positives = 122/364 (33%), Gaps = 35/364 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           R E V   +   G  R +     A   S T            +    ++  ++     QV
Sbjct: 251 RAEDVRTMICASGSQRLLSSRGAANADSRTNQLFVTDVPGRLADIASLIQAID-RPTRQV 309

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------------------ADFG 235
            ++  I E      + +G + ++     G S + +                     A   
Sbjct: 310 LIEARIVEADDGFSRALGARVAMLKRDGGDSPTSSGEMASQGNTGAGLRGPMVDLLAAPL 369

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
             F        +         +  L+ALE     R ++ P +       A    G +  Y
Sbjct: 370 SGFAPASAGIGLLSASVSRLLDIELNALEMQGRGRVVSSPRVITADRFKAVVEQGAEVPY 429

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
           +T   +   ++V      + L   P +   G + L +  ++ +  +G      P+   ++
Sbjct: 430 QT--RTQRGSAVQFRRATLKLEVEPRITPRGHVILDL--DIVKDSVGSETLHGPAIHTKR 485

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T+VE+ +GGT+ + G+   D +Q +  +P+L  IP++GALFR+   +   +E+ I  T
Sbjct: 486 VQTSVEVENGGTVAIGGIYSQDDRQDEARVPILGDIPLIGALFRHRIRSDRHSELIILIT 545

Query: 416 PFLV---KPVAMRD------LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           P +V   +  A          + P    +     +    + +               +  
Sbjct: 546 PTVVTGLQATAPGARHQDLGGATPRPGGAEAGQRRLAEADPLQSAEVDPLQGAEADPSRG 605

Query: 467 GAIG 470
              G
Sbjct: 606 ADAG 609


>gi|89093859|ref|ZP_01166805.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
 gi|89081989|gb|EAR61215.1| putative MSHA biogenesis protein MshL [Oceanospirillum sp. MED92]
          Length = 524

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/245 (25%), Positives = 99/245 (40%), Gaps = 20/245 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            QV ++  I EV  +   Q G   SI G   SG + +F     G    +      K  L 
Sbjct: 254 RQVVIEAKILEVTLNNGFQAGVNWSILGEPGSGNTANFTQSSVGLTNQDAIGGIFKADLS 313

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------- 302
              F  V+  L     ++ L+ P ++ ++ Q A    G    + T   +T          
Sbjct: 314 IGDFSAVIELLGSQGDVQVLSSPRVSTVNNQKAVIKVGTDEFFVTEVENTTTTGTSTTTS 373

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRV 353
            +  +T    G+ L  TP + + G I L I   VSE         +G +  ++P     +
Sbjct: 374 PSIELTPFFSGIALDVTPQISANGDIVLHIHPTVSEVVDQQKQISVGTDDFNIPLALSSI 433

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R++D+ V   SG  IV+ GL+K      +   P L  IP +G LF+  R    +TE+ I 
Sbjct: 434 RESDSIVRAESGQVIVIGGLMKSSDSDTQAKTPGLGDIPGVGNLFKQKRQAGSKTELVIM 493

Query: 414 ATPFL 418
             P L
Sbjct: 494 LRPVL 498


>gi|261253997|ref|ZP_05946570.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
 gi|260937388|gb|EEX93377.1| MSHA biogenesis protein MshL [Vibrio orientalis CIP 102891]
          Length = 552

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 66/318 (20%), Positives = 118/318 (37%), Gaps = 42/318 (13%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELS-ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           ++E+    ++  G  +++  + +A  ++   +  +    +     S++           Q
Sbjct: 218 QLEVAVSQLIGSGNGQSVVVTPQASVITIRAYPDEIREVRSFLGISQQ-------RMHRQ 270

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FGGKFVS 240
           V L+  I EV      Q G   S   SS+G + +                    G   + 
Sbjct: 271 VILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDASGSIIPAALPGLDAIG 330

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    V+   SFE VL  +     +  L+ P +TA + Q A    G    Y T  S
Sbjct: 331 TLLGGQSNLVISSGSFEAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYYVTDLS 390

Query: 301 S----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GV 343
           S          +    +T    G+ L  TP +   G + L +   V +          G 
Sbjct: 391 SVVGSGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVDEQVKEIGYGN 450

Query: 344 NAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            +  +P     +R++D+ +    G  +V+ GL+K +       +P L  IP LG LFRN+
Sbjct: 451 TSITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTIDQVSKVPFLGDIPALGHLFRNT 510

Query: 402 RFNREETEIFIAATPFLV 419
               ++TE+ I   P +V
Sbjct: 511 TKLTQKTELVILLKPSVV 528


>gi|163783780|ref|ZP_02178765.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880969|gb|EDP74488.1| hypothetical protein HG1285_09976 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 550

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/243 (24%), Positives = 111/243 (45%), Gaps = 18/243 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFV----- 239
             QV ++  I EVR+++++++G   S            S G   +      G        
Sbjct: 308 PPQVKIEARILEVRKEVVRELGINWSALLSNAKVQQSWSGGAGVNLGVGQAGAITPSLSA 367

Query: 240 SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT- 297
           + GG  +        +     L A ER   I++LA+PT+  I+GQ+A    G +  Y+T 
Sbjct: 368 TPGGILTFTYAKGALNALNLRLSAFERLGKIKSLAKPTIVTINGQNAVIKQGQEIPYQTA 427

Query: 298 -VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
            ++  +   S+   +  + L+  P +   GRI L +  E+ + + GV     P+   ++ 
Sbjct: 428 VIAGGSSVPSIQFKEAVLELNVLPIISPDGRILLDM--ELKQEIPGVQTPIGPTIIKKQV 485

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V + +G TIV+ G++    +  KEG+  L ++PIL  LF     + ++ E+ I  TP
Sbjct: 486 STKVIVNNGDTIVIGGIIDSLNRNTKEGVAGLVRVPILKWLFGQESKHIQDIELLIFITP 545

Query: 417 FLV 419
            ++
Sbjct: 546 SII 548


>gi|170723341|ref|YP_001751029.1| general secretion pathway protein D [Pseudomonas putida W619]
 gi|169761344|gb|ACA74660.1| general secretion pathway protein D [Pseudomonas putida W619]
          Length = 650

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 63/342 (18%), Positives = 115/342 (33%), Gaps = 38/342 (11%)

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +  L   +   +   LR    +  +  E   +     G  +       A +       
Sbjct: 267 TQVIYLRHANAGEVVKVLRGLSQEGGVPSEGAGE-----GEAKDKPVMAAASDSGIRLEY 321

Query: 170 QSGRNQYANSSSKK-------VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           + G N                ++  L+I    QV ++  IAEV     +++G Q      
Sbjct: 322 EEGTNAVVMVGPDSELAAYRSIVEQLDIR-RAQVVVEAIIAEVSDSRAQELGVQWLFADE 380

Query: 223 SSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFETVLHA 262
             G         G                        + G    +      F+F  +++A
Sbjct: 381 KFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSATTGVTAGIGHFGGGFNFAMLINA 440

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHF 318
           L+  +    L+ PTL  +    AS   G +  + T S +        ++   + GV L  
Sbjct: 441 LKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRI 500

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P +     + L I  EVS       A D+     R+  T V +   G ++L GL+ D++
Sbjct: 501 KPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDEL 559

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               + +P L  IP LG LFR+      +  + +   P +++
Sbjct: 560 STSDQRVPFLGDIPGLGRLFRSEASKNTKQNLMVFIRPRILR 601


>gi|309389127|gb|ADO77007.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 629

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 43/328 (13%)

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                +       +   D   +   + +F  +  + V      ++++G            
Sbjct: 247 YDQSLEPETRNIRVDYVDTEQISEIVGKFYPEIKLHVNAKRKEIIING------------ 294

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                        +      ++++N +N     QV ++  + E+  D  +++G  H    
Sbjct: 295 ------------AKNKLDGVEELINEINKPQY-QVVIETRVEEISSDFSRELGIDH---- 337

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                +     +   +  +     S K     +S+  V  AL+ +T  +TLA P L  ++
Sbjct: 338 -----TDGGIFNIIKESTNNADGESYKIEKLDYSWPDVFKALDTSTDTKTLASPKLMTLN 392

Query: 282 GQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS- 337
           G+ A+ +   +  YK V++ +     TS    + GV L FTP +     I L I   VS 
Sbjct: 393 GEEANLSILEEKPYKVVNTDSNGEKTTSWEYAEAGVELTFTPWISKNNEIELEIAPTVSS 452

Query: 338 -----EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                +   G      P+ + R  +TT+ L    T  + GL++ D +     IPLL  +P
Sbjct: 453 FSEIADSQTGEGESPPPAKKSRSVETTLRLKDNETFAVGGLIQTDKEGKITKIPLLGDLP 512

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           + G LF+    +    E+ I  TP ++K
Sbjct: 513 LFGELFKFREPSDSTNELIIFVTPHIIK 540


>gi|296123515|ref|YP_003631293.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
 gi|296015855|gb|ADG69094.1| type II and III secretion system protein [Planctomyces limnophilus
           DSM 3776]
          Length = 915

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 69/340 (20%), Positives = 131/340 (38%), Gaps = 22/340 (6%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              K +  +      ++  L+  ++  +  +  +V + S + V  G+     D+     L
Sbjct: 429 ASRKVLTKIYQPNYINVKELQQLVQPILTPTLGKVSITSPSSV--GIAENATDAG-GDSL 485

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS- 222
           S+         +   +   +V+  ++I    QV +   I  V+       G   ++ G  
Sbjct: 486 SQRDALLVQDYEEVINEIDRVIIEMDIP-PLQVIIDAKILSVKLTDDMAFGVNLALLGGD 544

Query: 223 ------SSGPSKSFAADFGGKFVS--------EGGDFSVKGVLDRFSFETVLHALERATA 268
                  +G S + ++ F G   S              +K           + ALE    
Sbjct: 545 KNLAVTGNGASIATSSGFPGGTGSIIPPGAQFLANTAGLKYGFIAGDITGFIRALESIAD 604

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKT--VSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              +A P + A++ Q A    G +  YKT   +S+    +V   + G  L   P +   G
Sbjct: 605 TSLVASPQIRALNKQRAEMIIGNRLSYKTLAFNSTQTIENVNFLESGTKLIIRPFIAPDG 664

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            + + +  E S  VI  +   +P     +  T V +  G T+V+ GL+ ++  +  + +P
Sbjct: 665 LVRMEVHPERSRAVINQST-GLPDQDTTEVTTNVMVRDGQTVVIGGLISEESTESIDRVP 723

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +L  IP++GA FRN     E TE+ +  TP +V   A   
Sbjct: 724 VLGAIPLVGAAFRNKSSRIERTELIVLITPRIVDEFAAAA 763


>gi|170694279|ref|ZP_02885433.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
 gi|170140702|gb|EDT08876.1| general secretion pathway protein D [Burkholderia graminis C4D1M]
          Length = 781

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/275 (21%), Positives = 101/275 (36%), Gaps = 40/275 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V++ L+     QV ++  I E+  +    +G Q  +  +S     + A       ++   
Sbjct: 400 VIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSIFAGTNLATGSSNSIINLTA 458

Query: 244 DFS---------------------------VKGVLDRFSFETVLHALERATAIRTLAEPT 276
             +                           +  +        +L AL +      L+ P 
Sbjct: 459 AAAAAGAAGATGGLANALGSGVQQGLNVGWIHNMFGVQGLGALLQALSQTADANVLSTPN 518

Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G     +T S S            +    D G+ LH  P +   G +
Sbjct: 519 LITLDNEEAKIVVGTNIPIQTGSYSNLTSGNASSAFNTYDRVDVGLTLHVKPQITDGGIL 578

Query: 329 GLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            L++ TE S  V G          P +  R   +TV   +G  IVL GL++D+ Q     
Sbjct: 579 KLQLYTEDSAIVNGTTNATTNPAGPQFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSK 638

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP +G LFR+ + NR +T + +   P ++
Sbjct: 639 VPLLGDIPWIGQLFRSEQKNRNKTNLMVFLRPVII 673


>gi|319761560|ref|YP_004125497.1| type iv pilus secretin pilq [Alicycliphilus denitrificans BC]
 gi|330823429|ref|YP_004386732.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
 gi|317116121|gb|ADU98609.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans BC]
 gi|329308801|gb|AEB83216.1| type IV pilus secretin PilQ [Alicycliphilus denitrificans K601]
          Length = 713

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 109/302 (36%), Gaps = 42/302 (13%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGF 215
           S+R   ++E   +Q           +    LL +     QV ++  I E R    + +G 
Sbjct: 408 SERGSAIAEPRTNQLFVTDTPAKLEEVRKLLLTLDVPVRQVMIEARIVEARDTFGRSLGV 467

Query: 216 Q-------------------------HSITGSSSGPSKSFA--ADFGGKFVSEGGDFSVK 248
           +                              S++  S  F    + GG FV+     S  
Sbjct: 468 RLGGGDLRANRGGDGGYSIGGGNRAAWGTNYSNATNSAGFGDAVNVGGNFVNLPASLSNV 527

Query: 249 GVLDRFSFE-----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +  F+               L A+E     + ++ P L       A    G ++ Y  
Sbjct: 528 TGVGSFALSIFNSAANRFLTLELSAMEADGQGKVVSSPRLITADQTKALIEQGTEYPYSV 587

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            +   GAT++      + L   P +   G I L    +V++   G +     +   +   
Sbjct: 588 TAP-NGATTIAFKKAVLKLEVVPQITPEGNIILD--LDVNKDSRGESTTQGVAIDTKHIK 644

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T V + +GGT+V+ G+ + +    +  IPLL  +P++G LF++      + E+ +  TP 
Sbjct: 645 TQVLVENGGTVVIGGIFELEETNQENKIPLLGDVPVMGNLFKSRTKESSKREMLVFITPK 704

Query: 418 LV 419
           ++
Sbjct: 705 VI 706


>gi|167736415|ref|ZP_02409189.1| general secretion pathway protein D [Burkholderia pseudomallei 14]
 gi|167813490|ref|ZP_02445170.1| general secretion pathway protein D [Burkholderia pseudomallei 91]
 gi|167892116|ref|ZP_02479518.1| general secretion pathway protein D [Burkholderia pseudomallei
           7894]
          Length = 742

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|260550835|ref|ZP_05825042.1| type II secretory pathway [Acinetobacter sp. RUH2624]
 gi|260406145|gb|EEW99630.1| type II secretory pathway [Acinetobacter sp. RUH2624]
          Length = 721

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 49/272 (18%), Positives = 99/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       +K+             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y+T ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQTTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTTNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVVGHLFRKDVKSDDKQELLIFVTPRIV 713


>gi|327483259|gb|AEA77666.1| MSHA biogenesis protein MshL [Vibrio cholerae LMA3894-4]
          Length = 559

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
               QV L+  I EV      Q G   S   SS+G +    +                 G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|167571519|ref|ZP_02364393.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 555

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
             +     L      Q   ++  +  +    NLL +                      QV
Sbjct: 261 ARAADVQRLLAGSAGQRILSKRGSVLADPRTNLLFVTDLSGRLVQVADLIGKLDTPSRQV 320

Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
            ++  I E  R   + +G +              +    +G      A   G F +    
Sbjct: 321 LIEARIVEGDRGFSRNLGARLALRAPDAGDRATGVVAGRNGTLADLTARPIGGFDAATAG 380

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 381 LTLFAARASRLLDVELSALESEGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 439

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  ++++  +G      P+   +   T VE+ +
Sbjct: 440 SGVQFRRATLKLEVEPQITPDGRVILDL--DIAKDSVGEETASGPAIHTKHVQTRVEVEN 497

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 498 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRALRAQRSELVVYITPTVV 552


>gi|330958318|gb|EGH58578.1| general secretion pathway protein D [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 784

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 106/292 (36%), Gaps = 26/292 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDASQFGVQWQ 490

Query: 219 ITGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
               S                            G       G  ++ G+ +    + +  
Sbjct: 491 TGNLSGNGGFGGVNLGGSGLNSNGGTSIDVLPQGLNVGVVRGAVTIPGIGEVLDLKVLAR 550

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 551 ALKSKGGSNVLSTPNLLTLDNEAASIFVGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 610

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + L+  P +   G + L I  EVS      +         R  DT++ L  G  +VL GL
Sbjct: 611 LKLNVRPQISEGGTVKLDIYQEVSSVDQRASLEAGTVTNKRAIDTSILLDDGQIMVLGGL 670

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L+D   Q    +P LS IP+LG LFRN   +  +T + +   P++++     
Sbjct: 671 LQDGYNQSNNAVPWLSNIPLLGVLFRNEARSTSKTNLMVFLRPYIIRDSGAG 722


>gi|296157578|ref|ZP_06840413.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
 gi|295892350|gb|EFG72133.1| general secretion pathway protein D [Burkholderia sp. Ch1-1]
          Length = 789

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              Q        + T        +    + + V++ L+     QV L+  I E+  +   
Sbjct: 364 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 422

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246
            +G Q  +  +S     +         V+                               
Sbjct: 423 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAVAAGAAGAATGGLASAIGTQGLQQGL 482

Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  +        +L AL +      L+ P L  +  + A    G     +T S S 
Sbjct: 483 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 542

Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350
                      +    D G+ LH  P +   G + L++ TE S  V G          P 
Sbjct: 543 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 602

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T +
Sbjct: 603 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 662

Query: 411 FIAATPFLV 419
            +   P ++
Sbjct: 663 MVFLRPVII 671


>gi|148254077|ref|YP_001238662.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
 gi|146406250|gb|ABQ34756.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           BTAi1]
          Length = 780

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/297 (22%), Positives = 116/297 (39%), Gaps = 32/297 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV +  TIAEV  +     G Q  +T  + G      +       S     +    
Sbjct: 492 RPQLQVAIDATIAEVTLNDNLNYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAG 551

Query: 251 LDRFSF------------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               +F                    +L AL   T ++ L+ P+L  I  Q+A+   G Q
Sbjct: 552 TITNAFLNRAFPGFNFLIGSESQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQ 611

Query: 293 HLYKTVSSS------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
               T S++      T   ++   + G++L   P V   G + L I+ E+S         
Sbjct: 612 VPVSTGSATVLTTNNTVVNTIDYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANS 671

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+   RK  + V + SG T++LAGL+ +  Q  + G+P + +IP+LG LF N+   R 
Sbjct: 672 LTPTVAQRKVKSAVAVASGQTVLLAGLISETHQGTRNGVPGVDQIPVLGDLFSNNDRTRG 731

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            TE+ I   P +++           D + V ++ ++     +  +          G+
Sbjct: 732 RTELIIFIRPQIIRDG--------TDAHYVAEELRSKLRGTIRPVSTSALQPPRAGR 780


>gi|167032058|ref|YP_001667289.1| general secretion pathway protein D [Pseudomonas putida GB-1]
 gi|166858546|gb|ABY96953.1| general secretion pathway protein D [Pseudomonas putida GB-1]
          Length = 584

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 108/295 (36%), Gaps = 26/295 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           MV +   S R      T            ++ + ++  L+I    QV ++  IAEV    
Sbjct: 243 MVASAGPSIRLEYEEGTNAVVMVGPDSELAAYRAIVEQLDIR-RAQVVVEAIIAEVSDSS 301

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKG 249
            +++G Q        G         G                        + G    +  
Sbjct: 302 AQELGVQWLFADEKFGAGIVNFGSNGVNIANIAGAAASGDNEALGDLLSTTAGATAGIGH 361

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGAT 305
               F+F  +++AL+  +    L+ PTL  +    AS   G +  + T S +        
Sbjct: 362 FGGGFNFAMLVNALKGKSGFNLLSTPTLLTLDNAEASILVGQEVPFVTGSVTQNNANPYQ 421

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           ++   + GV L   P +     + L I  EVS       A D+     R+  T V +   
Sbjct: 422 TIERKEVGVKLRIKPQINIDNSVRLDIVQEVSSIADSSAASDV-ITNKREIKTKVMVEDN 480

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G ++L GL+ D++    + +PLL  IP LG LFR+      +  + +   P +++
Sbjct: 481 GLVILGGLISDELSTSNQRVPLLGDIPYLGRLFRSDASKNTKQNLMVFIRPRILR 535


>gi|120609611|ref|YP_969289.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
 gi|120588075|gb|ABM31515.1| general secretion pathway protein D [Acidovorax citrulli AAC00-1]
          Length = 810

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 55/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-- 248
               QV ++  I EV  + +   G Q      + G                    ++   
Sbjct: 441 GRRAQVLVESLIVEVAANKVADFGIQWQGVMGNYGNGTIGVIGTNSTASGGANILNLALA 500

Query: 249 ------------------------------GVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                          +   +    + + LE       L+ P L 
Sbjct: 501 AASGSVSGVTSALSASGARPGNGLNVAIAPRINGNYYLGALANFLENTGDANVLSTPNLL 560

Query: 279 AISGQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +  + A    G    + T S +           T+V   D G++L   P +   G + L
Sbjct: 561 TLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVGLMLRVRPQISENGTVKL 620

Query: 331 RIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  EVS+      NA + P+   R  ++TV +  G  IVL GLL+D     ++ +PL+ 
Sbjct: 621 SLYQEVSQVNDGTANAVNGPTTSKRSIESTVLVNDGSVIVLGGLLEDRYSMGQDKVPLMG 680

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P++G LFRN    R++T + +   P +++  A  D
Sbjct: 681 DLPVVGGLFRNENRRRQKTNLMVFLRPVVIRDTATSD 717


>gi|167843644|ref|ZP_02469152.1| general secretion pathway protein D [Burkholderia pseudomallei
           B7210]
          Length = 743

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|332527680|ref|ZP_08403723.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
 gi|332112080|gb|EGJ12056.1| general secretion pathway protein D [Rubrivivax benzoatilyticus
           JA2]
          Length = 388

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/277 (21%), Positives = 100/277 (36%), Gaps = 35/277 (12%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---------------------PSKSF 230
              QV ++  I EV  D   + GFQ        G                        + 
Sbjct: 51  RRAQVYIESLIVEVAGDNAAEFGFQWQGLIGKDGDKTGLFGGTNFSNNNGSGNILNITTA 110

Query: 231 AADFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           AA      VS G   +V  +      ++   + + L+  T    ++ P L  +  + A  
Sbjct: 111 AASGSASGVSLGEGLNVGILRRYGGTYALGALANLLQSQTKTNIVSTPNLITLDNEEAKI 170

Query: 288 TSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
             G    + T   +   T       ++   D G+ L   P +   G + + I  E S  +
Sbjct: 171 VVGENVPFITGQYTNTGTATTSPFQTIERKDVGITLRIRPQIGESGTVRMTIYQEQSSVL 230

Query: 341 IGVNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                G     PS   R  ++ V +  G  IVL GL++D   + K  +PLL  IP LGAL
Sbjct: 231 STATVGTTNAGPSTTKRSIESQVVVEDGQIIVLGGLVQDSYVEEKSKVPLLGDIPGLGAL 290

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           FR+    ++ T + +   P +++      +    D Y
Sbjct: 291 FRSESRTKKRTNLMVFLRPVVMRDAD-STVRLSLDRY 326


>gi|303231123|ref|ZP_07317863.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
 gi|302514254|gb|EFL56256.1| bacterial type II and III secretion system protein [Veillonella
           atypica ACS-049-V-Sch6]
          Length = 399

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 127/326 (38%), Gaps = 36/326 (11%)

Query: 99  VILIGHDGKQMLNLDILIERDIAH---LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           V + G  G +     +++E  +A    LE  ++  + +    V   ++ +VL        
Sbjct: 105 VTVKGDSGTKEHRHVVVVEPKVASSTSLESVIKTVVPNGKFAVHKETNQIVL-------- 156

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
                                       ++  ++     QV L+ TI  +     K+ GF
Sbjct: 157 ----------------NVTGDEEKGVNSIIQSVD-RDMKQVRLEATIMAMEHSYTKETGF 199

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           + S              D    + +     +      +F  +  L  LE +     +A P
Sbjct: 200 RWS-----WLSLTGHGNDKTNSYGAITFGKAPDREAYKFFVKPELSLLETSGKAVVIATP 254

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           ++ A++G++A    G +      S S G     +   + G+ L +TP V   G I   I+
Sbjct: 255 SIVALNGEAAHILIGERIPVIEESISNGERKRSIHYEEVGIKLDYTPIVTKNGAIDTSIR 314

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            EVS P I V+         R+A T V L  G  +V+ GL+ +  Q+  E IP+L  IP+
Sbjct: 315 AEVSSP-IMVSELKSYKITTRQAQTRVRLQPGEVLVIGGLMDNRDQKQIEKIPVLGDIPL 373

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           LG LFR+SR  ++  E+ I     +V
Sbjct: 374 LGKLFRHSRKTKDSVEMVIFVKATVV 399


>gi|15640429|ref|NP_230056.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121587598|ref|ZP_01677363.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121727263|ref|ZP_01680422.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|147674773|ref|YP_001218670.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|153802215|ref|ZP_01956801.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|153818263|ref|ZP_01970930.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|153822274|ref|ZP_01974941.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|227080613|ref|YP_002809164.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|229507042|ref|ZP_04396548.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229508803|ref|ZP_04398295.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229519791|ref|ZP_04409234.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229606316|ref|YP_002876964.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254226017|ref|ZP_04919617.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|254850634|ref|ZP_05239984.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255743787|ref|ZP_05417744.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262153600|ref|ZP_06028728.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|262167634|ref|ZP_06035338.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|298501065|ref|ZP_07010866.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
 gi|9654823|gb|AAF93575.1| MSHA biogenesis protein MshL [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|121548171|gb|EAX58243.1| MSHA biogenesis protein MshL [Vibrio cholerae 2740-80]
 gi|121630382|gb|EAX62777.1| MSHA biogenesis protein MshL [Vibrio cholerae V52]
 gi|124122239|gb|EAY40982.1| MSHA biogenesis protein MshL [Vibrio cholerae MZO-3]
 gi|125621473|gb|EAZ49807.1| MSHA biogenesis protein MshL [Vibrio cholerae V51]
 gi|126511222|gb|EAZ73816.1| MSHA biogenesis protein MshL [Vibrio cholerae NCTC 8457]
 gi|126520230|gb|EAZ77453.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|146316656|gb|ABQ21195.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|227008501|gb|ACP04713.1| MSHA biogenesis protein MshL [Vibrio cholerae M66-2]
 gi|227012257|gb|ACP08467.1| MSHA biogenesis protein MshL [Vibrio cholerae O395]
 gi|229344480|gb|EEO09455.1| MSHA biogenesis protein MshL [Vibrio cholerae RC9]
 gi|229354206|gb|EEO19137.1| MSHA biogenesis protein MshL [Vibrio cholerae B33]
 gi|229355787|gb|EEO20707.1| MSHA biogenesis protein MshL [Vibrio cholerae BX 330286]
 gi|229368971|gb|ACQ59394.1| MSHA biogenesis protein MshL [Vibrio cholerae MJ-1236]
 gi|254846339|gb|EET24753.1| MSHA biogenesis protein MshL [Vibrio cholerae MO10]
 gi|255738536|gb|EET93924.1| MSHA biogenesis protein MshL [Vibrio cholera CIRS 101]
 gi|262023970|gb|EEY42667.1| MSHA biogenesis protein MshL [Vibrio cholerae RC27]
 gi|262030627|gb|EEY49263.1| MSHA biogenesis protein MshL [Vibrio cholerae INDRE 91/1]
 gi|297540313|gb|EFH76373.1| MSHA biogenesis protein MshL [Vibrio cholerae MAK 757]
          Length = 559

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 95/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
               QV L+  I EV      Q G   S   SS+G +    +                 G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|186474451|ref|YP_001863422.1| general secretion pathway protein D [Burkholderia phymatum STM815]
 gi|184198410|gb|ACC76372.1| general secretion pathway protein D [Burkholderia phymatum STM815]
          Length = 717

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/314 (19%), Positives = 104/314 (33%), Gaps = 44/314 (14%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G     Q        + T       +     + + V++ L+     QV ++  I E+   
Sbjct: 341 GSNEENQPGGMIQADAATNSLIITASDPVYRNLRSVIDQLDSR-RAQVYIEALIVELSAT 399

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG------------------- 249
               +G Q      S+G +               G  ++                     
Sbjct: 400 SSANLGIQWQGALLSNGGNNGLYGSSNFNSNGSQGIVNLTAQGAIIANNPAAALATTGTN 459

Query: 250 -------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                          + F    +L AL +++    L+ P L  +  + A    G      
Sbjct: 460 LLNNGLNVGLLHRFGNVFGLGGLLQALSQSSDANILSTPNLITLDNEEAKIVVGSNVPVV 519

Query: 297 TVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNA 345
           T S +T             +    D G+VLH  P +   G I L+I +E S       N 
Sbjct: 520 TGSYATPTANAATSVTAFNTFDRQDVGIVLHVKPQITDGGIIKLQIYSEDSSVDPTSTNN 579

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
               +   R   +TV    G  IVL GL++D+       +PLL  +P +G LFR+   +R
Sbjct: 580 PGGVTIIKRSVQSTVLSDDGEIIVLGGLMQDNYSNGNSKVPLLGDVPWIGQLFRSEEKSR 639

Query: 406 EETEIFIAATPFLV 419
            +T + +   P ++
Sbjct: 640 TKTNLMVFLRPVII 653


>gi|126643202|ref|YP_001086186.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 695

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 418 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 476

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 477 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 536

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 537 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 596

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 597 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 655

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 656 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 687


>gi|121607671|ref|YP_995478.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
 gi|121552311|gb|ABM56460.1| general secretion pathway protein D [Verminephrobacter eiseniae
           EF01-2]
          Length = 720

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 59/240 (24%), Positives = 108/240 (45%), Gaps = 12/240 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-------F 245
             QV ++ +I EV  +   + G Q +   S SG  +   A       S GG        F
Sbjct: 447 PTQVLIEASIIEVTLNDDLRYGLQWAFNDSRSGIDRGQGALSSRDGTSTGGILGGALAGF 506

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
           S        +   +L+ L   T ++ +A P+L  +   +AS   G Q   +  ++S    
Sbjct: 507 SYALKSPAGAVRAMLNVLSAKTTVKVVASPSLMVLDNHTASIAVGDQTPIQAGTTSNLEG 566

Query: 303 --GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +T++   D GV L  TP+V +   + ++I   V++        +  ++  R+  + V
Sbjct: 567 TVTSTNIEYKDTGVNLVVTPSVNAGNIVTMQIDQSVTDVGAKDEVTNQRAFLQRQLSSKV 626

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG +IV+ GL+++     K GIP+L  +P+ G LF  +  +   TE+ +  TP +V+
Sbjct: 627 SVRSGESIVMGGLIQESSSSTKSGIPVLHALPLFGNLFGTTVNDGRRTELLVIITPRVVR 686


>gi|149194260|ref|ZP_01871357.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
 gi|149135435|gb|EDM23914.1| putative type II protein secretion system D protein [Caminibacter
           mediatlanticus TB-2]
          Length = 450

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 96/262 (36%), Gaps = 20/262 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
             +     +  K MN L  +   +V + V I  V      + G   S    S   S   +
Sbjct: 178 TGDMKQIKAVDKFMNNLLNSLTKEVLIDVKIYSVELSKSHKTGIDWSQLSLSLPNS---S 234

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                K++   G        +  +F   L+ L +   + +++ P +  ++ Q A  + G 
Sbjct: 235 VPLRAKYIFGSGSIFNSATFNSAAF---LNFLAQNGNVNSISNPKIMTLNNQKAIISVGD 291

Query: 292 QHLYKT----VSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS------ 337
              YK     V+   G             GV+L  TP +   G I L I   +S      
Sbjct: 292 TIYYKYASKVVTDQNGNPQTQYTIGNKFVGVILDITPQISDDGTIILSIAPRISAFRDLN 351

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           +          P  +     + V++    TIVL GL+ DD      G+P+L +IPI+  L
Sbjct: 352 QLSTQTVRDMPPDTKDNTMLSVVKVKDNDTIVLGGLISDDKSLKVNGVPILKEIPIVKYL 411

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           F +      + E+    TP ++
Sbjct: 412 FSSKERITNKKELVFVITPHII 433


>gi|221069105|ref|ZP_03545210.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
 gi|220714128|gb|EED69496.1| general secretion pathway protein D [Comamonas testosteroni KF-1]
          Length = 793

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 115/327 (35%), Gaps = 43/327 (13%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +             T               + V++ L+     QV ++  I EV  D
Sbjct: 387 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 445

Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
              Q+G Q S                       +  G S +      G  +++    ++ 
Sbjct: 446 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 505

Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           G           V    S   +++ ++       L+ P L  +  + AS   G    + T
Sbjct: 506 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 565

Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
            S +            T+    D G +L   P +   G I + +  E S    G  NA  
Sbjct: 566 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 625

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   R  ++ V +  G  +VL GL+ D+  Q +E +PLL  IP+LG LFRN+   R++
Sbjct: 626 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRARKK 685

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
           T + +   P +++  +        D Y
Sbjct: 686 TNLMVFLRPTVLRDASSTS-QLSQDRY 711


>gi|76811977|ref|YP_331636.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|167822031|ref|ZP_02453502.1| general secretion pathway protein D [Burkholderia pseudomallei 9]
 gi|167900627|ref|ZP_02487832.1| general secretion pathway protein D [Burkholderia pseudomallei NCTC
           13177]
 gi|167921121|ref|ZP_02508212.1| general secretion pathway protein D [Burkholderia pseudomallei
           BCC215]
 gi|254194560|ref|ZP_04900991.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
 gi|76581430|gb|ABA50905.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710b]
 gi|169651310|gb|EDS84003.1| general secretion pathway protein D [Burkholderia pseudomallei S13]
          Length = 750

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|167582578|ref|ZP_02375452.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 580

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 56/295 (18%), Positives = 106/295 (35%), Gaps = 33/295 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQV 196
             +     L     +Q   ++  +  +    NLL +                      QV
Sbjct: 286 ARAADVQRLLAGSAAQRILSKRGSVLADPRTNLLFVTDLSGRLAQIADLIGKLDTPSRQV 345

Query: 197 TLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKFVSEGGD 244
            ++  I E  R   + +G +              +    +G      A     F +    
Sbjct: 346 LIEARIVEGDRGFSRNLGARLALRAPDAGDRAAGVVAGRNGTLADLTARPISGFDAATAG 405

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            ++         +  L ALE     + ++ P +       A    G +  Y+      G 
Sbjct: 406 LTLFAARASRLLDIELSALEAQGRGQIVSSPRVVTADRTKAVVEQGAELPYQ-AKVGNGV 464

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           + V      + L   P +   GR+ L +  +V++  +G      P+   +   T VE+ +
Sbjct: 465 SGVQFRRATLKLEVEPQITPDGRVILDL--DVAKDSVGEETASGPAIHTKHVQTRVEVEN 522

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GGT+ + G+ + D +     +PLL KIP+LGALFR+     + +E+ +  TP +V
Sbjct: 523 GGTVSIGGIFESDDRDDVTRVPLLGKIPVLGALFRHRAQRAQRSELVVYITPTVV 577


>gi|167908851|ref|ZP_02495942.1| general secretion pathway protein D [Burkholderia pseudomallei 112]
          Length = 745

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|126454161|ref|YP_001064292.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134281369|ref|ZP_01768077.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|217423996|ref|ZP_03455496.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|226193043|ref|ZP_03788653.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814399|ref|YP_002898850.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254258553|ref|ZP_04949607.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
 gi|126227803|gb|ABN91343.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106a]
 gi|134247036|gb|EBA47122.1| general secretion pathway protein D [Burkholderia pseudomallei 305]
 gi|163639391|gb|ABY28246.1| general secretion pathway protein D [Burkholderia pseudomallei]
 gi|217393059|gb|EEC33081.1| general secretion pathway protein D [Burkholderia pseudomallei 576]
 gi|225934643|gb|EEH30620.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506672|gb|ACQ98990.1| general secretion pathway protein D [Burkholderia pseudomallei
           MSHR346]
 gi|254217242|gb|EET06626.1| general secretion pathway protein D [Burkholderia pseudomallei
           1710a]
          Length = 757

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666


>gi|315636411|ref|ZP_07891655.1| general secretion pathway protein D [Arcobacter butzleri JV22]
 gi|315479277|gb|EFU69966.1| general secretion pathway protein D [Arcobacter butzleri JV22]
          Length = 478

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243
           + QV ++  I EV  +++ +IG  + I  SS+      A        S          G 
Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINSSARSDGINAISSNLNGGSNAIKEAVDTLGI 232

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299
             +   +    +    L+ L++  A+  ++EP++ AI  + +S   G     +       
Sbjct: 233 RMNDLNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358
                T+    D G+ L   P + S  ++ L I T +       V+AG  P    ++  T
Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I  TP++
Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412

Query: 419 V 419
           +
Sbjct: 413 I 413


>gi|4139236|gb|AAD05173.1| general secretory pathway protein D [Burkholderia pseudomallei
           1026b]
          Length = 750

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|53717646|ref|YP_106632.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
 gi|52208060|emb|CAH33990.1| general secretory pathway protein D [Burkholderia pseudomallei
           K96243]
          Length = 757

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666


>gi|153834019|ref|ZP_01986686.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
 gi|148869663|gb|EDL68649.1| msha biogenesis protein mshl [Vibrio harveyi HY01]
          Length = 544

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/303 (20%), Positives = 112/303 (36%), Gaps = 29/303 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
            EV      Q G   S   +S G S S   D     +      ++ G          +F+
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSIVVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFK 337

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
            V++ +     +  L+ P +TA + Q +    G    + T  SS               +
Sbjct: 338 AVMNFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
           T    G+ L  TP + + G + L +   V E    +   ++               +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN     ++TE+ I   P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517

Query: 417 FLV 419
            +V
Sbjct: 518 TVV 520


>gi|126441466|ref|YP_001057062.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
 gi|126220959|gb|ABN84465.1| general secretion pathway protein D [Burkholderia pseudomallei 668]
          Length = 757

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSANLGIQWQV 430

Query: 220 TGSSSGPSKSFAAD-----------FGGKFVSEGGDFSVKGVLDRF-------------S 255
             ++     +                 G   + GG     G +                 
Sbjct: 431 ANNALYAGTNLVTGQTNLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666


>gi|193078561|gb|ABO13584.2| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           ATCC 17978]
          Length = 721

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713


>gi|114321906|ref|YP_743589.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
 gi|114228300|gb|ABI58099.1| type IV pilus secretin PilQ [Alkalilimnicola ehrlichii MLHE-1]
          Length = 694

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 100/255 (39%), Gaps = 21/255 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++N L+I    QV ++  I     D  + +G +   T + S  S+  A           
Sbjct: 434 NLVNRLDIP-VQQVLIESRIVIADDDFSRDLGVRFGYTATGSLGSEGTAIGARPTPTPGI 492

Query: 243 GD-----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                                  G +     +  L A+E       ++ P +   + + A
Sbjct: 493 DGTDDLMVDLPAPAEAPRLGLAIGRIGDRLLQLELSAMETEGRGEVISSPRVITANQREA 552

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           +   G +  Y+   +++GAT+V   +  + L  TP +    R+ +    EVS   +G   
Sbjct: 553 NIRQGVEIPYQEE-TASGATNVEFKEAVLGLTVTPQITPDDRVIM--NLEVSNDTVGEVF 609

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +PS   +   T V + +G T+VL G+ +    +    +P    +P +G LFRN     
Sbjct: 610 AGVPSIDTQSVTTQVLVDNGETVVLGGVYERASGEQTRRVPFFGSLPGVGWLFRNRLTFD 669

Query: 406 EETEIFIAATPFLVK 420
           E++E+ +  TP ++ 
Sbjct: 670 EQSELLVFVTPRILD 684


>gi|299529584|ref|ZP_07043021.1| general secretion pathway protein D [Comamonas testosteroni S44]
 gi|298722447|gb|EFI63367.1| general secretion pathway protein D [Comamonas testosteroni S44]
          Length = 750

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 114/327 (34%), Gaps = 43/327 (13%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +             T               + V++ L+     QV ++  I EV  D
Sbjct: 344 GTAQQPSTGGMIQADPTTNSLIITAPGPLYRQLRTVIDKLD-GRRAQVLIEALIVEVSAD 402

Query: 209 ILKQIGFQHS--------------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
              Q+G Q S                       +  G S +      G  +++    ++ 
Sbjct: 403 KAAQLGVQWSSVIRNNGRVLGVLGNGTSISGISNIFGLSGAVGNLVNGTPLTDSQASAIG 462

Query: 249 G-----------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
           G           V    S   +++ ++       L+ P L  +  + AS   G    + T
Sbjct: 463 GMKGMNLGFTQNVNGNTSLGALVNLMQGDGDTNILSTPNLMTLDNEEASIMVGENVPFPT 522

Query: 298 VSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGD 347
            S +            T+    D G +L   P +   G I + +  E S    G  NA  
Sbjct: 523 GSYTNTAGTSGSVNPFTTYERKDVGTLLKIRPQINENGTIKMAVYQENSAVKQGTANAQS 582

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   R  ++ V +  G  +VL GL+ D+  Q +E +PLL  IP+LG LFRN+   R++
Sbjct: 583 GATTTKRSIESNVLVEDGAIVVLGGLIADEYSQSQERVPLLGDIPLLGNLFRNTSRERKK 642

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDHY 434
           T + +   P +++           D Y
Sbjct: 643 TNLMVFLRPTVLRDANSTS-QLSQDRY 668


>gi|91785777|ref|YP_560983.1| putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
 gi|91689731|gb|ABE32931.1| Putative general secretory pathway protein D [Burkholderia
           xenovorans LB400]
          Length = 814

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/309 (19%), Positives = 104/309 (33%), Gaps = 42/309 (13%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              Q        + T        +    + + V++ L+     QV L+  I E+  +   
Sbjct: 389 DDNQAGGMIQADAATNSLIVTAAEPVYRNLRAVIDQLDAR-RAQVYLEALIVELNSNTSG 447

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------------------------- 246
            +G Q  +  +S     +         V+                               
Sbjct: 448 NLGIQWQVANNSIFAGTNLQTGSSNSIVNLTAGAIAAGAAGAATGGLASAIGTQGLQQGL 507

Query: 247 ----VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
               +  +        +L AL +      L+ P L  +  + A    G     +T S S 
Sbjct: 508 NIGWIHNIFGVQGLGALLQALSQTADANVLSTPNLITLDNEEAKIVVGTNVPIQTGSYSN 567

Query: 303 --------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PS 350
                      +    D G+ LH  P +   G + L++ TE S  V G          P 
Sbjct: 568 LTSSTATSAFNTYDRVDVGLTLHVKPQITDGGILKLQLYTEDSAIVTGTTNATTNPAGPE 627

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G LFR+ +  R +T +
Sbjct: 628 FTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEQKTRNKTNL 687

Query: 411 FIAATPFLV 419
            +   P ++
Sbjct: 688 MVFLRPVII 696


>gi|149174476|ref|ZP_01853102.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
 gi|148846586|gb|EDL60923.1| Type IV pilin multimeric outer membrane protein [Planctomyces maris
           DSM 8797]
          Length = 799

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 78/418 (18%), Positives = 155/418 (37%), Gaps = 35/418 (8%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
             A I      +G+   ++I   + +   +  ++++V  +     D ++ S     L  +
Sbjct: 286 QDAEIMQVLDMLGELSGLNILTGQGVTGTISANLKNVTPAQA--LDAILRSRD---LTSE 340

Query: 93  NVG-------QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
             G       QA + L     ++++          A     L   I   N+ +  ++   
Sbjct: 341 KEGEFIYVMTQAQLELKKKSSRKVITKLYSPFYISAKELQNLITPILTENVGIVSLTSPS 400

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            + G+      +      ++T                +++  ++I    QV ++  I  V
Sbjct: 401 EV-GIAPDPTSAG-GDSFAQTDSILVRDYPEILEEVDRLLEKMDIP-PMQVVIEAMILSV 457

Query: 206 RRDILKQIGFQHSITGSSS------------GPSKSFAADFGGKFVSEGGDF-----SVK 248
             +   + G   ++ G ++              +  F        V   G F      +K
Sbjct: 458 ALNDDMKFGVNFAMLGGNNKNLVVDGNGNTLNNASGFPGSGSSSIVPPTGQFIADVAGLK 517

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATS 306
                      + ALE  T    +A P L A++ Q A    G +  Y TV+ +  T   +
Sbjct: 518 YGFLHGDISGFIEALEDVTETNLIASPQLRALNKQKAELIIGDRISYSTVTQNGNTSIQN 577

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           V   D G+VL+  P +   G+I + +  E S   I  +  ++P  R  +  T V +  G 
Sbjct: 578 VNFLDSGIVLNLRPFITPDGQIRMEVHPERSSATINPST-NLPDLRTTEVTTNVMVRDGH 636

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           T+V+ GL+++     +  +P L  +P++G  FR  R     TE+ +  TP +V+  A 
Sbjct: 637 TVVIGGLIEERTSDTRNQVPFLGALPVIGNAFRQQREITNRTELIVLITPRIVRAEAA 694


>gi|326315788|ref|YP_004233460.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372624|gb|ADX44893.1| type IV pilus secretin PilQ [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 715

 Score =  164 bits (415), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 120/336 (35%), Gaps = 50/336 (14%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191
           +++  ++ +++    G   T   S+R   ++E   +Q           +  ++++ L++A
Sbjct: 383 ADMVAQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPAKLEEVRQLLSTLDVA 441

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219
              QV ++  I E R    + +G +                                   
Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268
           +    G   + +   G  FV+     S       F+               L A+E    
Sbjct: 501 SSGGGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + ++ P L       A    G ++ Y   +   GAT++      + L  TP +   G I
Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L +  +V++   G       +       T V + +GGT+V+ G+ + +    +  IPLL
Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +P++G LF+N      + E+ +  TP ++     
Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713


>gi|184159708|ref|YP_001848047.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|239501963|ref|ZP_04661273.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           AB900]
 gi|183211302|gb|ACC58700.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           ACICU]
 gi|322509621|gb|ADX05075.1| HofQ [Acinetobacter baumannii 1656-2]
 gi|323519639|gb|ADX94020.1| Type II secretory pathway, component HofQ [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 721

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713


>gi|217969316|ref|YP_002354550.1| type II and III secretion system protein [Thauera sp. MZ1T]
 gi|217506643|gb|ACK53654.1| type II and III secretion system protein [Thauera sp. MZ1T]
          Length = 625

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 113/305 (37%), Gaps = 36/305 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV ++ TI EV      + G   +  G    PS S      G   S     S    
Sbjct: 296 AARRQVMIEATIVEVTLADGYRQGIDWTRLGV---PSWSVRPRGSGDATSGQPTLSYL-- 350

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------ 304
               + +  L  LE    ++ L+ P L+ ++ Q+A      + +Y  V S+T        
Sbjct: 351 --SANSDIRLELLETFGTVKVLSSPRLSVLNNQTAMLKVVEEVVYFLVDSTTTEYDDRKQ 408

Query: 305 ------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EPVIGVNAGDMP 349
                 T+  +   G+V+  TP + + G I L ++  +S          P +G     +P
Sbjct: 409 ARISATTTPQSVSVGMVMSVTPQISADGDITLNVRPTISGISGFKDDPNPSLGDIPNRVP 468

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             R R+ ++ + L SG   VL GL++D I      IPL   +P++G LF     N   TE
Sbjct: 469 QIRTREIESMLRLRSGEVAVLGGLMEDRIDHDTGRIPLFGDLPVVGELFTRRDNNVRRTE 528

Query: 410 IFIAATPFLVKP------VAMRDLSRPDDHYS--VEDDAKAFFFNRVNKIYGPKEASEVE 461
           + I   P L+         A      PDD +        +  F +   +       +   
Sbjct: 529 LLIFLRPLLIDEPGMRGGYAEYAGHLPDDDFLLDSPSPGQRNFPHLPLRPLLAPAGAVSA 588

Query: 462 GQNYK 466
            + + 
Sbjct: 589 AEGFS 593


>gi|91794695|ref|YP_564346.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
 gi|91716697|gb|ABE56623.1| type II and III secretion system protein [Shewanella denitrificans
           OS217]
          Length = 549

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 62/249 (24%), Positives = 102/249 (40%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV L+  I EV      Q G Q          +        G  +S      + GV   
Sbjct: 277 RQVILEAKIVEVTLSDGYQQGIQWDNVLGHIDSTNIEFGTAKGPNLSNSITSVLGGVTSL 336

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT---- 305
                 F T++  L+    +  L+ P +TA + Q A    G    + T  SST  T    
Sbjct: 337 SVKNTDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGNDEYFVTKVSSTTVTGTNP 396

Query: 306 ------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-------SEPVIGVNAGDMPSYR 352
                  +T    G+ L  TP + S G + L +   V        +  I  ++ ++P  +
Sbjct: 397 ITTPEVELTPFFSGIALDVTPQIDSEGNVLLHVHPSVIKVTEQIKDIQINGSSSELPLAQ 456

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT +   SG  +++ GL+K D  ++   +PLL  IP+LG +F N     ++TE+
Sbjct: 457 SEIRESDTVIRAASGDVVIIGGLMKSDNVEMVSKVPLLGDIPLLGEIFTNRSKQMKKTEL 516

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 517 IIMLKPTVV 525


>gi|291279696|ref|YP_003496531.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
 gi|290754398|dbj|BAI80775.1| general secretion pathway protein D [Deferribacter desulfuricans
           SSM1]
          Length = 621

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 103/255 (40%), Gaps = 28/255 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-----------------------GPSKS 229
             QV ++  + E   +     G +    G +                        G S +
Sbjct: 330 RKQVYVEALVLETSIEKGADFGVEWLAGGGNENFAGSAGFLNNGALTNFQSPVLEGNSPN 389

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           FAA  GG   +  G+      +   +   +++ ++  +AI  ++ P +  +  + A    
Sbjct: 390 FAALPGGFTAAILGNVITYEGVKFPTLSALVNFVKTDSAINIISNPQILTLDNEEAEVFV 449

Query: 290 GGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVN 344
           G    +    K  +++    S    D G+ L  TP +     + L+I+ EV +      N
Sbjct: 450 GENRPFLTSTKFDANNNPVQSYDYRDVGIRLKITPHISDNKTLTLKIEQEVKKVIANAGN 509

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P    RK  T VEL  G T+V++GL+ DD       +P LSKIPILG LF++   +
Sbjct: 510 DLTAPITLTRKTKTMVELIDGYTMVISGLIGDDTSVSNSEVPFLSKIPILGWLFKSRNRS 569

Query: 405 REETEIFIAATPFLV 419
           R +T + +  T  ++
Sbjct: 570 RSKTNMMVFITAKVI 584


>gi|226953742|ref|ZP_03824206.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
 gi|226835474|gb|EEH67857.1| fimbrial assembly protein PilQ [Acinetobacter sp. ATCC 27244]
          Length = 590

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 99/296 (33%), Gaps = 38/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV    T               +K+++LL+++ + QV ++  I     D  K++G +  I
Sbjct: 289 AVADVRTNTLIVNDTAQNIDKIRKMVDLLDVSVK-QVMIEARIVRASTDFTKEMGVKWGI 347

Query: 220 TGSSSGPSK----------------------------------SFAADFGGKFVSEGGDF 245
                  +                                   +   D G          
Sbjct: 348 LSQGITRNNDLLVGGSDTTLWNLREPKKDSETGGWKYEIERPDNLNVDLGAVTPGASRIA 407

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TG 303
                L  F  +  L A++       ++ P +     Q A   SG +  Y + +      
Sbjct: 408 FGLISLSDFMLDLELSAVQADGFGEVISTPKVMTADKQPAKIESGTKIPYASSTGGGANA 467

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
                  D  + L  TP++   G++ +++      P      G + +      DT V + 
Sbjct: 468 VPKTEFIDATLSLDVTPSITPDGKVMMKLNIAKDAPGAPTPTGQL-TISKNSIDTNVLVD 526

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G T+VL G+ + +    +  +P L  +P +G LFR       + E+ I  TP +V
Sbjct: 527 NGETVVLGGIFEQENLSSQIKVPFLGDLPYVGRLFRRDLKTDNKRELLIFVTPRIV 582


>gi|254469140|ref|ZP_05082545.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
 gi|211960975|gb|EEA96170.1| general (type II) secretion pathway (GSP) D protein, putative
           [Pseudovibrio sp. JE062]
          Length = 749

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 67/247 (27%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V+  L++    QV ++ TIAEV  +     G Q  +   +        AD   +     G
Sbjct: 488 VVQALDLPLS-QVVIEATIAEVNINDNLSYGVQWYLAKGNFAGGIGAVADGASRPTKAAG 546

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-- 301
                  +     + VL AL+  T ++ ++ P LT + G+ A    G Q  + + S S  
Sbjct: 547 GALSLNTVG---VDVVLKALQNITKVKVISSPYLTVLDGRKARLVIGDQVPFASRSQSSS 603

Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVR 354
                T    V   D G+VL   P + S   + L+IQ EVS  V          P+   R
Sbjct: 604 NDGNVTVTNEVDVKDTGIVLQVEPNIRSNNSVLLQIQQEVSNVVQNKTEEGSLTPTIATR 663

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR-NSRFNREETEIFIA 413
             ++ + + SG TI+L GL+++  +  + G+P+L KIP+ G LF+ N+  +   TE+ + 
Sbjct: 664 TINSDIVVESGRTILLGGLIQERKENGESGVPILRKIPVFGELFKENTTNDTRRTELLVM 723

Query: 414 ATPFLVK 420
            TP +V+
Sbjct: 724 ITPRVVR 730


>gi|269961295|ref|ZP_06175661.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
 gi|269833961|gb|EEZ88054.1| MSHA biogenesis protein MshL [Vibrio harveyi 1DA3]
          Length = 544

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 111/303 (36%), Gaps = 29/303 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
            EV      Q G   S   +S G S S   D     +      S+ G          +FE
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSVVVDRNPVSLPLDAIGSLLGGQTNVTFSDGNFE 337

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
            V+  +     +  L+ P +TA + Q +    G    + T  SS               +
Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
           T    G+ L  TP + + G + L +   V E    +   ++               +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKKLNLGGDFQDIQLPLAKSSIRES 457

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN     ++TE+ I   P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517

Query: 417 FLV 419
            +V
Sbjct: 518 TVV 520


>gi|53723933|ref|YP_104304.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121600876|ref|YP_994796.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124384347|ref|YP_001027865.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126450814|ref|YP_001082187.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238562298|ref|ZP_00440689.2| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
 gi|52427356|gb|AAU47949.1| general secretion pathway protein D [Burkholderia mallei ATCC
           23344]
 gi|121229686|gb|ABM52204.1| general secretion pathway protein D [Burkholderia mallei SAVP1]
 gi|124292367|gb|ABN01636.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10229]
 gi|126243684|gb|ABO06777.1| general secretion pathway protein D [Burkholderia mallei NCTC
           10247]
 gi|238522939|gb|EEP86381.1| general secretion pathway protein D [Burkholderia mallei GB8 horse
           4]
          Length = 757

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 430

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 431 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 490

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 491 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 550

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 551 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 610

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 611 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 666


>gi|254357385|ref|ZP_04973659.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
 gi|148026449|gb|EDK84534.1| general secretion pathway protein D [Burkholderia mallei
           2002721280]
          Length = 750

 Score =  164 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 106/296 (35%), Gaps = 37/296 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDSR-RAQVYIEALVVELQATTSANLGIQWQV 423

Query: 220 TG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------S 255
                          +G   S      G   + GG     G +                 
Sbjct: 424 ANNALYAGTNLVTGQTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQG 483

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT------- 308
              +L     ++    L+ P L  +  + A    G      T S S   +  T       
Sbjct: 484 LGALLQFFAGSSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTY 543

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELP 363
              D G+ LH  P +   G + L++ TE S  V G N        P++  R   +TV   
Sbjct: 544 DRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLAD 603

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 NGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 659


>gi|260556918|ref|ZP_05829135.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
 gi|260409524|gb|EEX02825.1| general secretion pathway protein D [Acinetobacter baumannii ATCC
           19606]
          Length = 721

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713


>gi|169794485|ref|YP_001712278.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213158943|ref|YP_002320941.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|215482074|ref|YP_002324256.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
 gi|301345422|ref|ZP_07226163.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB056]
 gi|301510068|ref|ZP_07235305.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB058]
 gi|301595996|ref|ZP_07241004.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB059]
 gi|169147412|emb|CAM85273.1| putative outer membrane protein (ComQ) [Acinetobacter baumannii
           AYE]
 gi|213058103|gb|ACJ43005.1| fimbrial assembly protein PilQ [Acinetobacter baumannii AB0057]
 gi|213988167|gb|ACJ58466.1| Fimbrial assembly protein pilQ precursor [Acinetobacter baumannii
           AB307-0294]
          Length = 721

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 563 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 682 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 713


>gi|289207464|ref|YP_003459530.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
 gi|288943095|gb|ADC70794.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. K90mix]
          Length = 710

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 102/265 (38%), Gaps = 30/265 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------------------- 221
           +++  L++    QV ++  I        +++G +  I+G                     
Sbjct: 449 RLVQTLDVP-VQQVLIETRIVIAEDTFNRELGARFGISGTRGDRRTRVGGAGSIEGADAA 507

Query: 222 ------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                    G +     +       + G   +  +      +  L AL+       ++ P
Sbjct: 508 RDASTAGVGGIAIGDRLNSSLPASGDAGRAGISLLRSGVLLDLELSALQVEGRGEIISSP 567

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +   +GQ+AS   G +  ++   +++GATS    +  +    TP +   G + L I+  
Sbjct: 568 RVITANGQTASIKQGEEIPFQEA-TASGATSTQFIEAVLSTEVTPQITPNGNVILDIRVT 626

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             EP        +P    R+ +T V + +G T+VL G+ + D +   E +P    IP LG
Sbjct: 627 KDEPS-QREVLGVPGINKREVNTQVFVGNGETVVLGGVYEIDSRTNLEKVPFFGDIPFLG 685

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LFRN      + E+ I  TP ++ 
Sbjct: 686 NLFRNRSTENTKAELLIFVTPRVLD 710


>gi|170288656|ref|YP_001738894.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176159|gb|ACB09211.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 1282

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%)

Query: 32   ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
            A  A +     EI     IS+         V +  + + +     A    + + S    Y
Sbjct: 928  AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980

Query: 89   LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            LF    G   V ++    + +       +  +   ++  +        + V+ +++ +V+
Sbjct: 981  LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035

Query: 148  HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
             G+  TI                             ++  L      QV +   I  V R
Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069

Query: 208  DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
             ++ ++  +  +  +    +   +      FV++  DF  + G +   +        +  
Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSTLSLQFSDQKTN 1129

Query: 267  TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S  
Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189

Query: 327  RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             I L +  + SEP   +N  ++P  R R+A T + + +G TI + GL+++     +  +P
Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247

Query: 387  LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             L  +P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1282


>gi|284432099|gb|ADB84857.1| PilQ [Bdellovibrio sp. JSS]
          Length = 724

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 123/328 (37%), Gaps = 20/328 (6%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
            +LE    R    S  +V+ +   +        + D  R V    T        +     
Sbjct: 403 NNLEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLER 457

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSK 228
           + +++  L+     QV+++  I E +    + IG   S TG+            +  PS 
Sbjct: 458 AARLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSF 516

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +      G   +   + +V  +    +    L   E    ++ ++ P +  +S + A   
Sbjct: 517 NVNQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADIN 576

Query: 289 SGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
              +   + V+ +  AT          + L  TP V + G + +++  +     +     
Sbjct: 577 QTTEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVNRQFRGADVSSAGQ 636

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   R+A+T V + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E
Sbjct: 637 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPYVSYLFKTKNISKE 696

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++E+ I  TP ++  +     +     +
Sbjct: 697 KSELLIFLTPXIMGQIDNNAGNPTTTDF 724


>gi|118475530|ref|YP_892173.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118414756|gb|ABK83176.1| type II and III secretion system protein [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 512

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 59/276 (21%), Positives = 104/276 (37%), Gaps = 32/276 (11%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------SKS 229
           +N L    + QV + V+I  V        G   S                         +
Sbjct: 224 LNQLENRLKKQVMIDVSIIAVELSNSYTKGIDWSKFELGFNSYLGNDPVTGAPSSIQFGT 283

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            +A    + +       V G     S + VL+ LE     + ++ P +  ++ Q A  T 
Sbjct: 284 GSAGNPAQSLRNITGGFVLGGGINLSMDGVLNFLETKGRTKVVSSPKIMTMNNQQALITV 343

Query: 290 GGQHLYKTVSSSTGATSVT----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G    Y+    +T   + T          +   G++L+  P V   GRI LRI   +S  
Sbjct: 344 GDNINYRVQEDTTNNNTQTAVTNTTYTQYSIFIGILLNLLPEVSDDGRIMLRINPSLSSF 403

Query: 340 VIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             G +           P    +K  T V++ SG TI+L GL+ +   +    +P+L  IP
Sbjct: 404 KYGDDNRRQANIREIAPDTLQKKLSTVVQVNSGDTIILGGLIGETKGKDNTSVPVLGDIP 463

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           + G LF++++ +   TE+    TP ++     + + 
Sbjct: 464 LFGNLFKSTKDSVSTTELIFIITPKVINNETPKQIR 499


>gi|209694066|ref|YP_002261994.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
 gi|208008017|emb|CAQ78154.1| type IV pilus, mannose-sensitive hemagglutinin D (MSHD) [Aliivibrio
           salmonicida LFI1238]
          Length = 546

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 56/285 (19%), Positives = 101/285 (35%), Gaps = 30/285 (10%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  +     +       K+ + + +   + QV L+  + EV      Q G   S   ++ 
Sbjct: 239 QASVITITASPDELRKVKQFLGISHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTAAV 298

Query: 225 GP---------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           G            +     G   +           +   +F  VL  ++    +  L+ P
Sbjct: 299 GGTDIVFGQVPGTTAGVLPGMDAIGSLLGGQTNITVSDGNFSAVLSFMDTQGDLNVLSSP 358

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
            +TA + Q A    G    + T  SS          +   ++T    G+ L  TP +   
Sbjct: 359 RVTAANNQKAVIKVGRDEYFVTEVSSVTGNGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
           G + L +   V +        D+               +R++D+ +   SG  +V+ GL+
Sbjct: 419 GNVMLHVHPSVIDVETETKIIDLGDVGGVLELPLAKSSIRESDSVIRAKSGDVVVIGGLM 478

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           K         +P L  IP+LG LFRN      +TE+ I   P +V
Sbjct: 479 KSQTVDQVSKVPFLGDIPVLGHLFRNVSQLTTKTELVILLKPTVV 523


>gi|85704683|ref|ZP_01035785.1| general secretion pathway protein D [Roseovarius sp. 217]
 gi|85671091|gb|EAQ25950.1| general secretion pathway protein D [Roseovarius sp. 217]
          Length = 648

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 64/371 (17%), Positives = 126/371 (33%), Gaps = 41/371 (11%)

Query: 102 IGHDGKQMLNLDIL-IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           +    + +    +     +   L   +R+         E  + T V  G+    ++ Q A
Sbjct: 240 LDRPQRSIATEVVHLNYANATDLADVIRQSFGAPEASTEGAAPTAVPGGITIVAEEQQNA 299

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           + ++      +          ++          DQV ++  I E+  +    + FQ    
Sbjct: 300 LIITAPTDRIASITGAVRGLDQR---------PDQVLIEAVIFELSVESFSDLSFQFGGV 350

Query: 221 GSSSGPSKS-------------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              +                   +    G   + GG        D+      L AL   +
Sbjct: 351 IDGATVGGVEFALQGRPTLTSLVSTVLAGNAPTGGGTGGSIAAFDKSGIGGFLAALASKS 410

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHF 318
           + + L+ P++  ++ + A         + T S ST            ++   D G+ L  
Sbjct: 411 STKLLSTPSILTLNNREAEIVVAQNVPFVTGSFSTVGDSAVPNQPFQTIQRQDVGLTLTV 470

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP +     + L I  EVS      +A        R+  T V +  G  I+L GLL++  
Sbjct: 471 TPQITRDKTVRLEINQEVSNLTNAASAAGGEITSKRELSTNVLVRDGHVIMLGGLLENGS 530

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA---------MRDLSR 429
             + + +P LS++P+LG LF+    N  +  + +   P ++              R+  R
Sbjct: 531 GSVNQRVPGLSELPLLGRLFKGRSVNENQRILLVMLRPRILSSDEEARELTKRLAREAKR 590

Query: 430 PDDHYSVEDDA 440
             D+ +  DD 
Sbjct: 591 AADYIAPADDG 601


>gi|325123720|gb|ADY83243.1| type IV pilus assembly protein PilQ [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 721

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q A   +G Q  Y+T ++S      S +  D  + L  TP++   G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G               T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +P +G LFR  + + ++ E+ I  TP +V
Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713


>gi|262280337|ref|ZP_06058121.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
 gi|262258115|gb|EEY76849.1| type II secretory pathway [Acinetobacter calcoaceticus RUH2202]
          Length = 717

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 48/268 (17%), Positives = 100/268 (37%), Gaps = 33/268 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
           K+++LL++  + QV ++  I        K++G +  I       +               
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGVNSNNSLLVGGSDTTLWNL 502

Query: 229 ---------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                          +   D G               +  F  +  L AL+       ++
Sbjct: 503 REPDDKGKYTIERPDNLNVDLGVTSTGASSIAFSLISMSDFMLDLELSALQADGYGEVIS 562

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            P +     Q A   +G Q  Y+T ++S      + +  D  + L  TP++   G+I ++
Sbjct: 563 TPKVMTADKQRARVATGQQVPYQTTTNSAAGSTATTSFKDALLSLDVTPSITPDGKIQMK 622

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +             G++      + +T V + +G T++L G+ +      +  +P L  +
Sbjct: 623 LDISKDSVADSAPNGEL-ILNKNQINTNVLVNNGETVILGGVFEQATSNSQTKVPFLGDL 681

Query: 392 PILGALFRNSRFNREETEIFIAATPFLV 419
           P++G LFR    + ++ E+ I  TP +V
Sbjct: 682 PVVGRLFRKDVKSDDKQELLIFVTPRIV 709


>gi|78224554|ref|YP_386301.1| type II and III secretion system protein:NolW-like [Geobacter
           metallireducens GS-15]
 gi|78195809|gb|ABB33576.1| type II and III secretion system protein:NolW-like protein
           [Geobacter metallireducens GS-15]
          Length = 636

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/251 (23%), Positives = 99/251 (39%), Gaps = 14/251 (5%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---------KSFAAD 233
           +V+  L+     QV ++  IAEV  D  K++G Q +++G  +  +          +F   
Sbjct: 350 QVIQKLDKR-RRQVFVQAVIAEVSLDKAKELGLQLAVSGGGTAGNTAEAGVFDPFNFVGG 408

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              +  +     +            VL AL    A+  L+ P +     + A    G   
Sbjct: 409 ASPQQAAILNVLTGFAGSSNLQLGGVLKALISNGAVNVLSTPNILTSDNKEAEIFVGENV 468

Query: 294 LY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
            +       S+     S+   D G+ L  TP +     + L I  E+S     V      
Sbjct: 469 PFLTQTNLTSTGLSQQSIERKDTGITLRITPQISEGEFVKLDIYQEISAVKDSVGQAKDL 528

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R A T V +    T+V+ GL++D   +    IP+L  IP+LG  F+     RE+T 
Sbjct: 529 VTTKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPILGDIPLLGWFFKTKSARREKTN 588

Query: 410 IFIAATPFLVK 420
           + I  TP +++
Sbjct: 589 LMIVLTPRIIR 599


>gi|57242551|ref|ZP_00370489.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
 gi|57016836|gb|EAL53619.1| general secretory pathway protein D [Campylobacter upsaliensis
           RM3195]
          Length = 468

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/255 (22%), Positives = 98/255 (38%), Gaps = 16/255 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +  L    + QV + V+I  V  +     G            +     +   +  S 
Sbjct: 197 GEYITKLENRLKKQVIIDVSIIAVNLNENHSSGINWQNFNLDFVSTTQNGQNSFIQLQSG 256

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G     G+    +F +VL+ L +    + L+ P L A++ Q A  + G    Y+   SS
Sbjct: 257 QGFVKNLGLRANINFNSVLNFLSQNGKTQVLSNPKLMALNNQQAIISVGDTINYQVKESS 316

Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----- 347
            G  + TT            G++L   P +    +I LRI   +S+     +        
Sbjct: 317 KGTENGTTVSESFSNYSIFVGILLSILPEISDDNKIMLRINPSLSDFKYPQDNQRQSSPR 376

Query: 348 --MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    +K  T V + +  T++L GL+  +  +    +  LSKIP+LG LF     + 
Sbjct: 377 TIAPDTIQKKLSTVVSMENNQTLILGGLISHNQIKEASEVSFLSKIPLLGLLFSGDETSS 436

Query: 406 EETEIFIAATPFLVK 420
             TEI    TP +V 
Sbjct: 437 NSTEIVFIITPSIVD 451


>gi|254507437|ref|ZP_05119572.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
 gi|219549693|gb|EED26683.1| msha biogenesis protein mshl [Vibrio parahaemolyticus 16]
          Length = 527

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 98/263 (37%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
             + QV L+  I EV      Q G   S   SS+G + +                    G
Sbjct: 241 RMQRQVILEAKILEVTLSDGYQQGINWSKAFSSNGTNYTIGQGSIVKDTSGSIIPAVLPG 300

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ VL  +     +  L+ P +TA + Q A    G    +
Sbjct: 301 LDAIGTLLGGQSNLVISSGSFDAVLSFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYF 360

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +    +T    G+ L  TP +   G + L +   V +    V  
Sbjct: 361 VTDLSSVVGNGDNSEPSPEVELTPFFSGISLDVTPQIDDQGNVLLHVHPAVIDVNEQVKE 420

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P+L  +P+LG 
Sbjct: 421 IGFGDSRITLPLARSSIRESDSVIRAQDGDVVVIGGLMKSNTVDQVSKVPVLGDVPVLGH 480

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 481 LFRNTSKLTQKTELVILLKPTVV 503


>gi|291327009|ref|ZP_06126658.2| competence protein E [Providencia rettgeri DSM 1131]
 gi|291312226|gb|EFE52679.1| competence protein E [Providencia rettgeri DSM 1131]
          Length = 358

 Score =  164 bits (414), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 100/228 (43%), Gaps = 5/228 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV +   I    R  L+++G +  +    +  +           +S    F+V  + D 
Sbjct: 132 KQVQITAHIISSSRTALQELGLEWGMMAGGNLNANHLYRYNRYSSISGQFAFNVLSLGDG 191

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              E  L ALE+   +  +A P L A   Q AS   G +     V+S+   T V   D  
Sbjct: 192 L-LEMKLKALEKENLLSIIASPRLVASHQQPASIQQGTEIP--YVTSNDKKTHVQFKDAV 248

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           + +  TP+++   +I L ++   + P   + +      +   ++  T V + +  T++L 
Sbjct: 249 LGMDVTPSIVRDEKIELNLKISHNSPDTALTSSQHHHLAINKQEIATNVTIKNNETLILG 308

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ +   ++ + G+P LS IP LG LF N+  + ++  + +  TP L+
Sbjct: 309 GIFQQKQEKTEMGLPFLSHIPFLGTLFTNTAEHTDKRVLIVFITPKLI 356


>gi|225850376|ref|YP_002730610.1| general secretion pathway protein D [Persephonella marina EX-H1]
 gi|225645330|gb|ACO03516.1| general secretion pathway protein D [Persephonella marina EX-H1]
          Length = 669

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 119/305 (39%), Gaps = 29/305 (9%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
             + +   +          +  + V NL     + QV +   I EV    LK+IG +  +
Sbjct: 338 VADKASNSIIIYANKTEYEAIKELVQNLDK--QKKQVLVTALITEVSEQALKEIGVRWQV 395

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL--------------HALER 265
            GS  G +        G +   G    V GVL        +                LER
Sbjct: 396 FGSQGGAAFRGGISKEGFYNIIGSTNFVAGVLSTSGENVEIGGNVLFFPDLLFLFSLLER 455

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPT 321
            T    ++ P +  +    AS        +        +     +    + G++L  TP 
Sbjct: 456 GTGFNIVSSPKILTMDNIEASINVSQVTPFAQSVKFDINGNPIINYDYKEVGLILKVTPH 515

Query: 322 VLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           +     I + I  EV+E      P IG  +  +P    R+ +TT+ + +G TIVL GL+ 
Sbjct: 516 ISGDN-IVMEIHQEVNEVIGYEKPQIGEISYVVPITSKRELNTTITVTNGKTIVLGGLVS 574

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS 435
               +  EG+P  S IPI+G LF+    +  +T +F+  TPF+++     DL+R  + + 
Sbjct: 575 KKTIKTMEGVPFFSSIPIIGNLFKYRSEDLNKTNLFVFLTPFIIE--KPEDLARITEEHQ 632

Query: 436 VEDDA 440
              +A
Sbjct: 633 KLSEA 637


>gi|157738059|ref|YP_001490743.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
 gi|157699913|gb|ABV68073.1| general secretion pathway protein D [Arcobacter butzleri RM4018]
          Length = 478

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 51/241 (21%), Positives = 105/241 (43%), Gaps = 14/241 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GG 243
           + QV ++  I EV  +++ +IG  + I  +S+      A        S          G 
Sbjct: 173 KAQVYVQAKIIEVNNELVNKIGISYGIINASARSDGINAISSNLNGGSNAIKEAVDTLGI 232

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG----QHLYKTVS 299
             S   +    +    L+ L++  A+  ++EP++ AI  + +S   G     +       
Sbjct: 233 RMSDVNIKSGLALGASLNLLQQNGALDIVSEPSILAIDNKESSIYVGEKISVEISSTLTD 292

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADT 358
                T+    D G+ L   P + S  ++ L I T +       V+AG  P    ++  T
Sbjct: 293 GGLQRTNYEREDIGLTLKVKPRISSDTKLTLEINTLLEGIKSTSVSAGQNPDTLKKEIKT 352

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G ++++ GL+++  + +++ +P+L  IP+ G LF+N     ++  + I  TP++
Sbjct: 353 AAILNNGESVIIGGLIENKNETIEQKVPVLGDIPLFGELFKNDSKMNKKNNLVIIVTPYM 412

Query: 419 V 419
           +
Sbjct: 413 I 413


>gi|281412148|ref|YP_003346227.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
 gi|281373251|gb|ADA66813.1| type II and III secretion system protein [Thermotoga naphthophila
            RKU-10]
          Length = 1282

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 76/395 (19%), Positives = 150/395 (37%), Gaps = 45/395 (11%)

Query: 32   ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
            A  A +     EI     IS+         V +  + + +     A    + + S    Y
Sbjct: 928  AEDAPLYDLLEEIAGELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 980

Query: 89   LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            LF    G   V ++    + +       +  +   ++  +        + V+ +++ +V+
Sbjct: 981  LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1035

Query: 148  HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
             G+  TI                             ++  L      QV +   I  V R
Sbjct: 1036 TGISETI-----------------------KKELDDIIEKLK-KPTKQVEISAKI--VDR 1069

Query: 208  DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
             ++ ++  +  +  +    +   +      FV++  DF  + G +   +        +  
Sbjct: 1070 SLIDRLSKETVLELTGGNVNVGSSGAGISFFVTDYLDFEKILGEILNSNLSLQFSDQKTN 1129

Query: 267  TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S  
Sbjct: 1130 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1189

Query: 327  RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             I L +  + SEP   +N  ++P  R R+A T + + +G TI + GL+++     +  +P
Sbjct: 1190 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1247

Query: 387  LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             L  +P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1248 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVKVVEP 1282


>gi|609625|gb|AAA58785.1| EpsD [Vibrio cholerae]
          Length = 674

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S S           G                            
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412

Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                         +          +    +  +++A+   ++   L+ P++T +    A
Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472

Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  +
Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591

Query: 401 SRFNREETEIFIAATPFLVK 420
           +    E+  + +   P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611


>gi|323498120|ref|ZP_08103124.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
 gi|323316831|gb|EGA69838.1| type IV pilus biogenesis protein PilQ [Vibrio sinaloensis DSM
           21326]
          Length = 561

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 107/262 (40%), Gaps = 28/262 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------ 231
           +++ L+I  + QV ++  I  V    L ++G +   + ++   +   +            
Sbjct: 300 IIDTLDIPVK-QVQIEARIVTVNEGNLDELGVRWGFSSTNGNNTVGGSIESNLFQAGLLE 358

Query: 232 ------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                               +    F V  +      +  L AL+R +    ++ P L  
Sbjct: 359 GDTLPVDDFLNVNLAATSTTASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLIT 418

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + + A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P
Sbjct: 419 TNKKPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRP 477

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             V+    G+  +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGAL
Sbjct: 478 GDVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSVTDTVDKVPLLGDLPVLGAL 537

Query: 398 FRNSRFNREETEIFIAATPFLV 419
           FR S     ++E+ I  TP +V
Sbjct: 538 FRRSYQQMGKSELLIFVTPKVV 559


>gi|121586611|ref|ZP_01676396.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121726696|ref|ZP_01679921.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|147674158|ref|YP_001218221.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|153212585|ref|ZP_01948332.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|153802934|ref|ZP_01957520.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|153817437|ref|ZP_01970104.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|153821293|ref|ZP_01973960.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|153825504|ref|ZP_01978171.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|153828338|ref|ZP_01981005.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|227082847|ref|YP_002811398.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|229507219|ref|ZP_04396724.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229509860|ref|ZP_04399341.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229513661|ref|ZP_04403125.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229516981|ref|ZP_04406427.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229524711|ref|ZP_04414116.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229527341|ref|ZP_04416733.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229606725|ref|YP_002877373.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254285928|ref|ZP_04960890.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|254851270|ref|ZP_05240620.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255744309|ref|ZP_05418261.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262158581|ref|ZP_06029696.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|262170026|ref|ZP_06037715.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|298500452|ref|ZP_07010256.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|11182423|sp|P45779|GSPD_VIBCH RecName: Full=General secretion pathway protein D; AltName:
           Full=Cholera toxin secretion protein epsD; Flags:
           Precursor
 gi|121549170|gb|EAX59203.1| general secretion pathway protein D [Vibrio cholerae 2740-80]
 gi|121630857|gb|EAX63239.1| general secretion pathway protein D [Vibrio cholerae V52]
 gi|124116456|gb|EAY35276.1| general secretion pathway protein D [Vibrio cholerae 1587]
 gi|124121547|gb|EAY40290.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|126512023|gb|EAZ74617.1| general secretion pathway protein D [Vibrio cholerae NCTC 8457]
 gi|126521225|gb|EAZ78448.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|146316041|gb|ABQ20580.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|148876168|gb|EDL74303.1| general secretion pathway protein D [Vibrio cholerae 623-39]
 gi|149740789|gb|EDM54880.1| general secretion pathway protein D [Vibrio cholerae MZO-2]
 gi|150424110|gb|EDN16049.1| general secretion pathway protein D [Vibrio cholerae AM-19226]
 gi|227010735|gb|ACP06947.1| general secretion pathway protein D [Vibrio cholerae M66-2]
 gi|227014619|gb|ACP10829.1| general secretion pathway protein D [Vibrio cholerae O395]
 gi|229334973|gb|EEO00458.1| general secretion pathway protein D [Vibrio cholerae 12129(1)]
 gi|229338292|gb|EEO03309.1| general secretion pathway protein D [Vibrio cholerae bv. albensis
           VL426]
 gi|229346044|gb|EEO11016.1| general secretion pathway protein D [Vibrio cholerae RC9]
 gi|229349538|gb|EEO14494.1| general secretion pathway protein D [Vibrio cholerae TMA 21]
 gi|229353334|gb|EEO18273.1| general secretion pathway protein D [Vibrio cholerae B33]
 gi|229354724|gb|EEO19645.1| general secretion pathway protein D [Vibrio cholerae BX 330286]
 gi|229369380|gb|ACQ59803.1| general secretion pathway protein D [Vibrio cholerae MJ-1236]
 gi|254846975|gb|EET25389.1| general secretion pathway protein D [Vibrio cholerae MO10]
 gi|255737834|gb|EET93227.1| general secretion pathway protein D [Vibrio cholera CIRS 101]
 gi|262021434|gb|EEY40146.1| general secretion pathway protein D [Vibrio cholerae RC27]
 gi|262029742|gb|EEY48391.1| general secretion pathway protein D [Vibrio cholerae INDRE 91/1]
 gi|297540621|gb|EFH76678.1| general secretion pathway protein D [Vibrio cholerae MAK 757]
 gi|327485201|gb|AEA79608.1| General secretion pathway protein D [Vibrio cholerae LMA3894-4]
          Length = 674

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 294 KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 352

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S S           G                            
Sbjct: 353 MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 412

Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                         +          +    +  +++A+   ++   L+ P++T +    A
Sbjct: 413 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 472

Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  +
Sbjct: 473 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 532

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR+
Sbjct: 533 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 591

Query: 401 SRFNREETEIFIAATPFLVK 420
           +    E+  + +   P +++
Sbjct: 592 TSSQVEKKNLMVFIKPTIIR 611


>gi|332873777|ref|ZP_08441719.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
 gi|332738000|gb|EGJ68885.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6014059]
          Length = 712

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704


>gi|303248827|ref|ZP_07335077.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
 gi|302489768|gb|EFL49699.1| general secretion pathway protein D [Desulfovibrio fructosovorans
           JJ]
          Length = 695

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 104/310 (33%), Gaps = 33/310 (10%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           G  +   +++    +++   +       +       +++  L+      V ++  I EV 
Sbjct: 318 GTTKKELNAEGVRIIADKGTNTLVVMAPSEEFPLFDEIIAQLD-RPRRGVFVEALIMEVS 376

Query: 207 RDILKQIGFQHSITGSSSGPS---------KSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
            D     G      G  +              F +                  +   +F 
Sbjct: 377 TDKSVTFGVNWVAGGRVNAVGDNKKGGLVYGGFESSSTSVGTQNSLTLPGGLSVGMLTFP 436

Query: 258 TVL--------HALERATAIR----TLAEPTLTAISGQSASFTSGGQHLYKTVSSST--- 302
             +         AL            L+ P L  +  + AS T      Y T + S    
Sbjct: 437 VKIGDFVYSNIQALISDGKSNNTFNILSTPQLMTLDNEEASITVAENRPYLTATDSGQNK 496

Query: 303 ---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKA 356
                      D G  L  TP +     I L+I  EVS              P+ R R  
Sbjct: 497 QDRTYQQFDYKDVGTKLKITPHIGQSDSIRLKILQEVSRVDKAETLDTGSLQPTTRKRAT 556

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            TTV++  G TIV++GL+    Q     +P +S IP+LG LF++    RE+T +++  TP
Sbjct: 557 QTTVQVKDGQTIVISGLMGVSDQDSFSNVPGISDIPVLGWLFKHKSKTREKTNLYVFITP 616

Query: 417 FLVKPVAMRD 426
            +V+  A   
Sbjct: 617 RIVQSPAQAA 626


>gi|93006778|ref|YP_581215.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394456|gb|ABE75731.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 750

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 110/271 (40%), Gaps = 33/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +N L+     QV ++  I EV  D   Q+G Q ++  ++SG       + G   VS 
Sbjct: 393 EDAVNQLDSR-RSQVLIQAAIVEVSGDDATQLGVQWALGNANSGYGVVNFNNVGASAVSL 451

Query: 242 GGDFSVKGV------------------------LDRFSFETVLHALERATAIRTLAEPTL 277
                  G                          +   +  +L AL+ +T+   L+ P++
Sbjct: 452 AAAALSGGTGISAAAGSIAGALLGIGSSSKDSKGNAQFYGAILQALDSSTSANLLSMPSI 511

Query: 278 TAISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  + AS   G    + T S       S+    ++   D G+ L+  P + + G + L
Sbjct: 512 LTLDNEKASILVGQNVPFVTGSYTTGSDSSTNPFQTIDRQDIGINLNVIPHIGANGTVRL 571

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  EVS  V G           +   +TT+      TI L GL++D+    ++ +P L 
Sbjct: 572 EVSQEVSSVVPGSAGNASGLITNKSLINTTILADDQQTIALGGLMRDNSTTRQQKVPGLG 631

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P++G LFR+   N +++ + I   P +++
Sbjct: 632 NVPLIGRLFRSDNDNSQKSNLIIFLQPTILR 662


>gi|77459397|ref|YP_348904.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77383400|gb|ABA74913.1| general secretion pathway protein D [Pseudomonas fluorescens Pf0-1]
          Length = 783

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 68/296 (22%), Positives = 119/296 (40%), Gaps = 31/296 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++LL+     QV ++  I EV  D   + G Q  
Sbjct: 432 TIQADATTNTLLISAPEPLYRNLREVIDLLDQR-RAQVVIESLIVEVGEDDASEFGVQWQ 490

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVK------------------GVLDRFSFETVL 260
             G+  G      A+ GG  ++  G  S+                   G+      + + 
Sbjct: 491 T-GNLGGKGVIGGANLGGSGINVNGKTSLDVLPQGLNLGYVNGTVDIPGIGKILDLKVLA 549

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDY 312
            AL+       L+ P L  +  ++AS   G    + +         +S+    +VT  + 
Sbjct: 550 RALKSKGGTNVLSTPNLLTLDNEAASIFVGQTIPFVSGSYVTGGGGTSNNPFQTVTREEV 609

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADTTVELPSGGTIV 369
           G+ L+  P +   G + L I  EVS      +A    +      R  DT++ L  G  +V
Sbjct: 610 GLKLNVRPQISEGGTVKLDIYQEVSSIDERASAAANSAGIVTSKRALDTSILLDDGQIMV 669

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L GLL+D   Q  + +P LS IP +GALFRN R +  +T + +   P++++  A  
Sbjct: 670 LGGLLQDGYSQSNDAVPWLSNIPGIGALFRNERRSITKTNLMVFLRPYIIRDSAAG 725


>gi|262045226|ref|ZP_06018252.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037436|gb|EEW38681.1| protein transporter HofQ [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 331

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/230 (27%), Positives = 105/230 (45%), Gaps = 5/230 (2%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV---SEGGDFSVKGVL 251
           QV L   I  +    L+++G +  +  + S P                +        G +
Sbjct: 99  QVELAAHIVSMSETSLRELGVKWRLAEAGSPPGSGQITTLSSDVSVNDASTRAGFNIGKI 158

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +    E  L ALER   +  +A P L A   Q AS   G +  Y+  S  +GATSV   +
Sbjct: 159 NGRLLELELSALERKQQVEIIASPRLLASHMQPASIKQGSEIPYQVSSGESGATSVEFKE 218

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
             + +  TPTVL  GR+ L+++   + P  V+    G+  +   ++ +T VE+ SG T+ 
Sbjct: 219 AVLGMEVTPTVLQQGRVRLKLRISENTPGQVLKQENGEALAIDKQEIETLVEVRSGETLA 278

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G+     +  ++ +PLL  IP+LG LFR    + E  E+ +  TP ++
Sbjct: 279 LGGIFSQKNKTARDSVPLLDDIPVLGRLFRRDGKDNERRELVVFITPRIL 328


>gi|332851353|ref|ZP_08433405.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332868764|ref|ZP_08438387.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
 gi|332730069|gb|EGJ61397.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013150]
 gi|332733193|gb|EGJ64390.1| type IV pilus secretin PilQ [Acinetobacter baumannii 6013113]
          Length = 712

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 98/272 (36%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 435 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 493

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 494 REPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYG 553

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q+A   +G Q  Y++ ++S      + +  D  + L+ TP++   G+
Sbjct: 554 EVISTPKVMTADKQTAKVATGQQVPYQSTTNSAAGSTATTSFKDALLSLNVTPSITPDGK 613

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G              +T V + +G T++L G+ +      +  +P 
Sbjct: 614 IQMKLDISKDSVA-GAAPNGELILNKNNINTNVLVDNGETVILGGVFEQTTMNSQTKVPF 672

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              IP++G LFR    + ++ E+ I  TP +V
Sbjct: 673 FGDIPVVGRLFRKDVKSDDKQELLIFVTPRIV 704


>gi|82703023|ref|YP_412589.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411088|gb|ABB75197.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 789

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 112/302 (37%), Gaps = 36/302 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T            ++ + V+  L++    QV ++  IAE+  D   + G Q   
Sbjct: 418 IQADAATNSIIITAPDAIYNNLRAVVEKLDVRRV-QVYIEALIAEITADRAAEFGIQWQN 476

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVK--------------------------GVLDR 253
             +++               + GG   +                           G+   
Sbjct: 477 LSNAAQGGTQVFGGTNFNAGTAGGGSIISTAQNPIANAASGLTIGIMNGLVTAIPGIGPV 536

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------STGAT 305
            +  T++ ALE       L+ PTL  ++ + A    G      T           ++   
Sbjct: 537 LNIHTLIRALETDANANILSTPTLLTLNNEEARIIIGQNVPIPTGQFIPPVGGAVTSPFQ 596

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPS 364
           +V+  D G+ L   P +     + ++I  EVS  V G  NA +      R  ++TV +  
Sbjct: 597 TVSRQDVGLSLKIKPLISEGNTVRVQIFQEVSSVVPGTVNATNGLITNKRSIESTVLVDD 656

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +VL GL++D +    E IPL+  IP+ G LF  ++ +R +T + +   P L++    
Sbjct: 657 GQILVLGGLMQDSVNDSVERIPLVGAIPLFGQLFSYNKRSRNKTNLMVFLRPTLMRAGDA 716

Query: 425 RD 426
            D
Sbjct: 717 AD 718


>gi|293610712|ref|ZP_06693012.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827056|gb|EFF85421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 721

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/272 (17%), Positives = 95/272 (34%), Gaps = 37/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           K+++LL++  + QV ++  I        K++G +  I       + +             
Sbjct: 444 KMIDLLDVQVK-QVMVEARIVRASTSFTKELGVKWGILSQGITNNNNLLVGGSETTLWNL 502

Query: 236 --------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                     G     G        +  F  +  L AL+     
Sbjct: 503 REPKKDETTGGYKYTIERPDNLNVDLGVTNPAGSIAFGLISMSDFMLDLELSALQADGYG 562

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGR 327
             ++ P +     Q A   +G Q  Y+T ++S      S +  D  + L  TP++   G+
Sbjct: 563 EVISTPKVMTADKQPAKVATGQQVPYQTTTNSAAGATASTSFKDALLSLDVTPSITPDGK 622

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I +++         G               T V + +G T++L G+ +      +  +P 
Sbjct: 623 IQMKLDISKDSVS-GAAPNGELILNKNNIKTNVLVNNGETVILGGVFEQTTLNSQTKVPF 681

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +P +G LFR  + + ++ E+ I  TP +V
Sbjct: 682 FGDLPGIGRLFRKDQKSDDKQELLIFVTPRIV 713


>gi|254497667|ref|ZP_05110447.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
 gi|254353104|gb|EET11859.1| type IV pilus (Tfp) assembly protein PilQ [Legionella drancourtii
           LLAP12]
          Length = 652

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 50/249 (20%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------- 233
           ++  L++  + QV ++  I EV +D  + +G +  ++  +        A+          
Sbjct: 407 LIKQLDVPVK-QVLIEARIVEVSKDFARDLGIRWGVSKPNHLSGTLQGANQMEQGTAPAN 465

Query: 234 ---------------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                      ++  + D    +  L ALE       ++ P L 
Sbjct: 466 VNPYTQRLNLDLVAAPATGMTPASVGIALAKLGDNILLDLELSALESEGRAELISSPRLI 525

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
             + Q A   SG +  Y+  +SS GAT+V      + L  TP +    +I + ++    +
Sbjct: 526 TTNQQPAVIDSGQEIPYQESTSS-GATAVAFKKAVLSLRVTPQITPDSKILMDLKIN-QD 583

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                    +P+   ++  T V + +G TIVL G+ + D  +    IP L ++P++G LF
Sbjct: 584 TASTQLFNGVPAILTKEIQTNVLVSNGQTIVLGGIYQQDKSRTITRIPFLGQLPVVGNLF 643

Query: 399 RNSRFNREE 407
           RN++    +
Sbjct: 644 RNTQIVINK 652


>gi|325917654|ref|ZP_08179848.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536118|gb|EGD07920.1| type IV pilus secretin PilQ/competence protein [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 616

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 99/267 (37%), Gaps = 33/267 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
              DQV ++  I        + +G +  I G                           + 
Sbjct: 348 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNNGIHNV 407

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               +F    G    +  G  +   +   F+ +  L A++       ++ P +   + + 
Sbjct: 408 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 467

Query: 285 ASFTSGGQHLYKT----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
                G +  Y T     +S     +V   +  + L  TPT+ +  R+ L +  +  E  
Sbjct: 468 GVIKQGREIGYVTISGGGASGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 527

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +N    G +P    R+ +T V +  G T+V+ G+ +   ++    +P L  IP LG L
Sbjct: 528 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 587

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
           F+    ++E+ E+ +  TP +++  + 
Sbjct: 588 FKKRGRSKEKAELLVFVTPKVLRVASA 614


>gi|149189065|ref|ZP_01867353.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
 gi|148837028|gb|EDL53977.1| MSHA biogenesis protein MshL [Vibrio shilonii AK1]
          Length = 538

 Score =  163 bits (413), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 62/301 (20%), Positives = 109/301 (36%), Gaps = 31/301 (10%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            ++  G  R++  + +A  L+        R        ++ +++       QV L+  I 
Sbjct: 221 KLIGTGDGRSVVVTPQASLLTLRAYPDEIRQV------REFLDMSQQRLHRQVILEAKIL 274

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFE 257
           EV      Q G   S  G++ G      +      V                 +    FE
Sbjct: 275 EVTLSDGYQQGISWSNIGAAIGSGGVSISRPAQNPVPPLNQIGTLLGGQTNVTITDGHFE 334

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSV 307
            VL  +     +  L+ P +TA + Q +    G    + T  S+               +
Sbjct: 335 AVLSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTDISTVIGSGENANVAPQVEL 394

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY------RVRKADT 358
           T    G+ L  TP +   G + L +     EV E    +               +R++D+
Sbjct: 395 TPFFSGISLDVTPQIDEKGNVLLHVHPAVIEVQEEKKEIEVLGDSIIVPLAKSSIRESDS 454

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +    G  +V+ GL+K    ++   +P L  IP LG LFRN++   E+TE+ I   P +
Sbjct: 455 VIRAADGDVVVIGGLMKSATTEMVSKVPYLGDIPALGHLFRNTQNVTEKTELVILLRPTV 514

Query: 419 V 419
           V
Sbjct: 515 V 515


>gi|260222239|emb|CBA31603.1| hypothetical protein Csp_D27950 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 711

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 55/265 (20%), Positives = 97/265 (36%), Gaps = 29/265 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH------------SITGSSSGPSKSFAADFGGKF 238
           A   QV ++  IAEV  D   + G Q              + G++ G + S         
Sbjct: 394 ARRAQVFVESLIAEVSADKAAEFGIQWQGALGNAGDSAIGVLGTNFGSAGSNIISLAAAG 453

Query: 239 VSEGGDFSVKGVLDRFS-------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            S     +    +   +          +   LE   +   L+ P L  +  + A    G 
Sbjct: 454 ASGTVSPAKGLNIGVANRTNGVYVLGFLARFLESTGSGNVLSTPNLLTLDNEEAKIVIGQ 513

Query: 292 QHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VI 341
              + T   +             ++   D G+ L   P +   G I L I  EVS     
Sbjct: 514 NVPFVTGQFTNTGSNGGSVNPFQTIERKDVGLTLKVKPQISENGTIKLAIYQEVSSVLAS 573

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
              A + P+   R  ++ V +  G  +VL GLL+D+    +E +P L+ +P  G LF++ 
Sbjct: 574 TAGAANGPTTNKRTIESNVLVEDGAVVVLGGLLQDEYAGNQEKVPGLADVPWFGNLFKSE 633

Query: 402 RFNREETEIFIAATPFLVKPVAMRD 426
             +R++T + +   P +V+      
Sbjct: 634 SRSRKKTNLMVFLRPVVVRDATATQ 658


>gi|297570326|ref|YP_003691670.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296926241|gb|ADH87051.1| type II and III secretion system protein [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 514

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 71/338 (21%), Positives = 122/338 (36%), Gaps = 35/338 (10%)

Query: 114 ILIERDIAHLEMTL-RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           ++    +  L   + R+ +      V  +   VV    VR  + +  A  L+        
Sbjct: 164 VIRVMSVEDLRRQVERQGLYLEEEHVSPLQTRVV---PVRFSEPASLAESLTPMLSRDKE 220

Query: 173 RNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIG 214
            N   + +  +    L I                      QV ++  I E  +++ +++G
Sbjct: 221 GNPRGSVTVDRHTRSLVIRDTAENLERLTSFLQEVDQATPQVLIEAHIIETNQEVARELG 280

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGG-----------DFSVKGVLDRFSFETVLHAL 263
            Q              A  F  +  +  G                  +     E  L AL
Sbjct: 281 VQWGSFWRGQQRVSDAAGGFTYQAGNPIGEQYSLDVLTGEVGFYTASVAGNILEMQLQAL 340

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +R   +  L+ P++  +    A   SG +  Y+++    G TSV   D  + L  TP V+
Sbjct: 341 QREGKVNILSRPSVATLDNHEAVLESGTEVPYQSI--EDGTTSVQYKDAVLRLLVTPQVI 398

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           S   I L+I+ +  E  +       P    + A T + +  G T+V+AGL K+       
Sbjct: 399 SRENIKLKIEAQKDEVDLTRTVMGNPFIIKKLAQTNLIVEDGSTVVIAGLAKERQASSST 458

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           G+PLL  IP LG  FR+     E  E+ I  TP ++  
Sbjct: 459 GVPLLKNIPGLGVFFRSDARAGEFEELLIFITPRILSA 496


>gi|156975932|ref|YP_001446839.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
 gi|156527526|gb|ABU72612.1| hypothetical protein VIBHAR_03698 [Vibrio harveyi ATCC BAA-1116]
          Length = 544

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 111/303 (36%), Gaps = 29/303 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI---AGEDQVTLKVTI 202
           +L   V  +  S +   +  T  +     +      ++V   L +     + QV L+  I
Sbjct: 218 MLQQAVANLIGSGKGQSVVVTPQAGVITVRAFPDEIREVREFLGVSQERMQRQVILEAKI 277

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-----VLDRFSFE 257
            EV      Q G   S   +S G S S   D     +      ++ G          +FE
Sbjct: 278 LEVTLSDGYQQGINWSNMSASIGNSGSILVDRNPAKLPLDAIGTLLGGQTNVTFSDGNFE 337

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------GATSV 307
            V+  +     +  L+ P +TA + Q +    G    + T  SS               +
Sbjct: 338 AVMSFMATQGDLNVLSSPRITAANNQKSVIKVGTDEYFVTELSSNAGNGENSNAVPEVEL 397

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS-----------YRVRKA 356
           T    G+ L  TP + + G + L +   V E    +   ++               +R++
Sbjct: 398 TPFFSGISLDVTPQIDNKGNVFLHVHPAVIEVEEEIKQLNLGGDFQNIQLPLAKSSIRES 457

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           D+ +    G  +V+ GL+K    +    +P L  +P LG LFRN     ++TE+ I   P
Sbjct: 458 DSVIRAKDGDVVVIGGLMKQQNLEQVSKVPFLGDVPALGNLFRNINNVTQKTELVILLKP 517

Query: 417 FLV 419
            +V
Sbjct: 518 TVV 520


>gi|269960458|ref|ZP_06174830.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269834535|gb|EEZ88622.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 226

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 12/191 (6%)

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            LAEP+LTA+SG  A F +GG+        +    ++   +YGV L F P +LS  RI L
Sbjct: 1   MLAEPSLTALSGTQAEFVAGGEFPIPVP--NDDGITIDYKEYGVQLDFVPYILSDKRINL 58

Query: 331 RIQTEVSEPVIG----------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           ++   VSE                   +P    R A TT+EL  G TI +AGLL ++ + 
Sbjct: 59  KMNVNVSEISNSGVLTFNPNEVNATFFIPPITKRSAGTTIELADGQTIGIAGLLSENARN 118

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           + +GIP  S +P+LG LF++  F   ETE+ I  TP L  P+  R ++ P D +   +D 
Sbjct: 119 VADGIPGASDLPVLGRLFKSEEFTSGETELVILVTPRLATPIDRRRITLPTDGFVSPNDV 178

Query: 441 KAFFFNRVNKI 451
           + +   +  ++
Sbjct: 179 EFYLLGKGAEL 189


>gi|120553686|ref|YP_958037.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
 gi|120323535|gb|ABM17850.1| pilus (MSHA type) biogenesis protein MshL [Marinobacter aquaeolei
           VT8]
          Length = 572

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 109/306 (35%), Gaps = 30/306 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--FV 239
           +  +    +  + QV L+  I EV  +   Q G   +   SS+G +  F +   G     
Sbjct: 273 ENYLRKTELIMQRQVVLEAKILEVGLNEGYQQGIDWNDVQSSAGRADYFTSQSLGGQQIR 332

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---- 295
           +          +    F  ++  L +   ++ L+ P ++ ++ Q A    G    +    
Sbjct: 333 TPDIGGLFSATVSAGDFTGLIELLGQQGNVQILSSPRISTVNNQKAVIKVGTDEFFVTDI 392

Query: 296 ---------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                        S++ +  +T    G+ L  TP +   G I L +   VSE        
Sbjct: 393 DFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQIAEDGAITLHVHPSVSEVADQEKVI 452

Query: 347 DM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            +             VR+ D+ +   SG  +V+ GL+++  +     +P  S+IP+LG L
Sbjct: 453 TIGERDVTLPLARSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEIPLLGEL 512

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
           F+   F   ++E+ I       +PV         D  S   +        +N     K  
Sbjct: 513 FKQRNFESRKSELVILL-----RPVVANAGQMQAD-VSASRERMNVLRELLNSSESVKPQ 566

Query: 458 SEVEGQ 463
            E   +
Sbjct: 567 PETAPR 572


>gi|195952458|ref|YP_002120748.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
 gi|195932070|gb|ACG56770.1| general secretion pathway protein D [Hydrogenobaculum sp. Y04AAS1]
          Length = 660

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 59/327 (18%), Positives = 114/327 (34%), Gaps = 39/327 (11%)

Query: 132 ADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
            + NI V   +    ++ L               +     + S       S  + + NL+
Sbjct: 327 PNQNINVISSNKPIGSIYLS----------DGTRIGFDRATNSVILYATKSQYENLKNLI 376

Query: 189 NIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKF 238
               E   QV +  ++ E         G      G + G   + A+          G   
Sbjct: 377 KKLDEKRIQVLIAASVVEANLTKQLTTGVNWQALGKNGGIGFNPASLQTIYQGLLSGNFV 436

Query: 239 VSEGGDFSVKGVLDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           V      S+   +             L  LE+    + ++ P +  +  + A       +
Sbjct: 437 VGVTSSSSISANVGGNTIIFPDLAVFLSLLEQGNGFKIISNPKVLTLDNEEAIIKEAQVY 496

Query: 294 LYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVN 344
            Y T +          +    D G+ L   PTV          + L+  T  +   +   
Sbjct: 497 PYVTGTQYNINGFPILTYDYKDIGLELDVIPTVSKDNIRLGINLNLQDITGFTNTNVAGQ 556

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P    R  ++ V + SG T++L GL+ ++  +   GIP+L  IP+LG LF+     
Sbjct: 557 TVPIPITTDRVLNSEVVVKSGQTVILGGLVSNNTIKNISGIPILQDIPVLGNLFKYQNRE 616

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPD 431
            +++ +FI  TP+++K  +   L++  
Sbjct: 617 NKKSTLFIFITPYIIK--SPDQLAKIT 641


>gi|220921783|ref|YP_002497084.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
 gi|219946389|gb|ACL56781.1| general secretion pathway protein D [Methylobacterium nodulans ORS
           2060]
          Length = 784

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 74/284 (26%), Positives = 130/284 (45%), Gaps = 19/284 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILK 211
                R V +S    + S        + KKV   L    A   QV + VTIAEVR +   
Sbjct: 469 PGARGRGVAISADPANNSVITYADGDTYKKVYAALRRLDATPAQVAVNVTIAEVRLNDQL 528

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------ETVLHAL 263
           + G Q+ +  S  G  K+  + FG    +  G  +V      F+F        + V+ AL
Sbjct: 529 KYGVQYFLDSSRIGLGKNKGS-FGLVSAAATGATNVLKPGAGFNFLVGGYSGPDVVISAL 587

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVL 316
           +  T ++ L+ P+L  +  Q A+   G      T  + +           V   D G++L
Sbjct: 588 DGFTDVKVLSSPSLVVLENQPATLQVGDSVPITTRQAQSIDYANAPLINQVEFRDTGIIL 647

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           +  P +     + ++I+ E+S  V G +    P+   R+  +T+ + +G T++LAGL+ D
Sbjct: 648 NVIPRIGQNDAVTMQIEQEISAVVGGSDTLT-PTISKRRVASTISVANGQTVLLAGLISD 706

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             Q+ ++GIP L+++P +G LF ++    E TE+ +   P +V+
Sbjct: 707 KHQRERDGIPFLNRLPQIGQLFSSTDNGAERTELVVFIRPVVVR 750


>gi|171318827|ref|ZP_02907964.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
 gi|171095968|gb|EDT40901.1| general secretion pathway protein D [Burkholderia ambifaria MEX-5]
          Length = 775

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 96/275 (34%), Gaps = 39/275 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            V++ L+     QV ++  I E+       +G Q  +         +     G       
Sbjct: 393 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 451

Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
                          G   S  G  S    +              +L      +    L+
Sbjct: 452 LTAGGVANAAGGITGGGLASNLGSLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 511

Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G              + ++S    +    D G+ LH  P +   
Sbjct: 512 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 571

Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + L++ TE S       NA   P++  R   +T+   +G  IVL GL++D+ Q     
Sbjct: 572 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 631

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 632 VPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 666


>gi|89901694|ref|YP_524165.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346431|gb|ABD70634.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 710

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 41/264 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS----------------------ITGSSSGPSKSFA 231
            QV ++  I E      K +G +                          G+S G + + +
Sbjct: 444 RQVLIEARIVEASDTFGKSLGVKLGGNDLRAQRGGDGGYQLSGDNRVAFGTSYGNAVASS 503

Query: 232 ADFG----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
              G                G +       S+            L ALE     + ++ P
Sbjct: 504 GAGGVVDLTSNFVNLPAVGQGGYNPATFALSIFSSAANRFLNLELSALEADGKGKVVSSP 563

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +       A    G +  Y+ V+SS+GAT++      + L  TP +   G I L    +
Sbjct: 564 RVVTADQIKALIEQGTELPYQ-VASSSGATAIAFRKANLKLEVTPQITPEGNIILD--LD 620

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++  +G +     +   +   T V + +GGT+V+ G+ +      +  +P L  +P +G
Sbjct: 621 VNKDTVGQSTAAGFAINTKHIKTQVLVENGGTVVIGGIFELTESDNETKVPFLGDLPGVG 680

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF+       + E+ +  TP +V
Sbjct: 681 NLFKTRGRVSNKQEMLVFITPKVV 704


>gi|21244106|ref|NP_643688.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
 gi|21109733|gb|AAM38224.1| fimbrial assembly protein [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 633

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 97/263 (36%), Gaps = 33/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
              DQV ++  I        + +G +  I G                           + 
Sbjct: 365 RPVDQVLIESRIVIATDTFARDLGARFGIAGRRQYGDNTAVISGSSTNNVSVINDGLHNV 424

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               +F    G    +  G  +   +   F+ +  L A++       ++ P +   + + 
Sbjct: 425 PSGLNFNLPAGTFTTNTAGSIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTANQRE 484

Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
                G +     +    +      +V   +  + L  TPT+ +  R+ L +  +  E  
Sbjct: 485 GVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 544

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             +N    G +P    R+ +T V +  G T+V+ G+ + + ++    +P L  IP LG L
Sbjct: 545 RFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAKVPFLGDIPFLGNL 604

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+    ++E+ E+ +  TP +++
Sbjct: 605 FKKRGRSKEKAELLVFVTPKVLR 627


>gi|260428676|ref|ZP_05782654.1| general secretion pathway protein D [Citreicella sp. SE45]
 gi|260420270|gb|EEX13522.1| general secretion pathway protein D [Citreicella sp. SE45]
          Length = 320

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +  +++      +   +      +++  +L        QV L+ TIAEV  +    +G +
Sbjct: 44  QTYKVAADTSRNALIVRATQEEHREITAMLRDLDTAARQVLLEATIAEVTLNDELNVGVR 103

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                       S   + G      G       +L R      L+AL   T ++ ++ PT
Sbjct: 104 WYFQNGDVATRFSDLENGGVAGNYPG----FSAILSRGGANVALNALAAVTDVKVISSPT 159

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
           L  +  Q      G Q      +SS         T V   D G++L   P + + G + L
Sbjct: 160 LMVVDNQEGLLQIGDQVPIARQTSSEANADAVVLTQVEYRDTGIILKVRPRIGADGAVNL 219

Query: 331 RIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +I+ EVS+      +  D P+   RK  T   L  G T+ L GL+++   + +  +P L 
Sbjct: 220 KIEQEVSDVSATRTSGIDSPTISTRKVSTHAVLADGQTLTLGGLVQERDNKTRAEVPGLG 279

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           ++P++G LFR     ++ TE+ I   P +V   A
Sbjct: 280 RVPVVGTLFRAKDNAKDRTELIIMIRPRVVHNAA 313


>gi|239814151|ref|YP_002943061.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
 gi|239800728|gb|ACS17795.1| type IV pilus secretin PilQ [Variovorax paradoxus S110]
          Length = 714

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 103/279 (36%), Gaps = 41/279 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------------ 219
           ++  L+I    QV ++  I E      K +G +                           
Sbjct: 439 LIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTFGVMPV 497

Query: 220 -----------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERA 266
                         ++    +  A   G   +  G F++       S      + ALE  
Sbjct: 498 TTAAGGVGGATATWTNSNFINLPAGDAGGTGNAPGTFAISLFNSSLSRMLNLEISALEAD 557

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + ++ P +       A    G +  Y+  +SS GATS++     + L  TP +   G
Sbjct: 558 GKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPEG 616

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L    +VS+   GVN    P+   +   T V + +GGT+V+ G+ +      +  +P
Sbjct: 617 NIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRVP 674

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +L ++P LGALFR       +TE+ +  TP ++      
Sbjct: 675 VLGEVPYLGALFRKRERVANKTEMLVFITPKMITDRNAA 713


>gi|253701597|ref|YP_003022786.1| type II and III secretion system protein [Geobacter sp. M21]
 gi|251776447|gb|ACT19028.1| type II and III secretion system protein [Geobacter sp. M21]
          Length = 870

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/422 (17%), Positives = 151/422 (35%), Gaps = 74/422 (17%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            D  + +  T+ ++ K   +     +    +  L    L + D       +R  +    I
Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   ++ +VL        D    +E++   L  +                        V
Sbjct: 296 YVNEEANALVLR-------DKPEVIEVARKILEANDVPDAE------------------V 330

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-------------- 242
            L+V + E+ +   +  G   S   +S G +   +   G  F+++               
Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSMGVTGPGSTSGGSPFLADTLGAVTTTTTGTGTA 390

Query: 243 ----------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                       F+++G     +      +  +  +   TL+ P +   + + A F  G 
Sbjct: 391 TTSAQPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGT 450

Query: 292 QHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGV 343
           +    T SS      + +V   D GV ++  PT+     + +++  EVS       +   
Sbjct: 451 RVPITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTD 510

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            A  + +   R  DT + L  G T ++ GL++      K  + LL  IPI+G LF N+  
Sbjct: 511 QATTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKNKVFLLGDIPIIGPLFSNTSD 570

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            +++TE+ +A TP +V+ V              ++D  AF+  R ++    +  S     
Sbjct: 571 KKDKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEP 619

Query: 464 NY 465
           ++
Sbjct: 620 DF 621


>gi|167834842|ref|ZP_02461725.1| general secretion pathway protein D [Burkholderia thailandensis
           MSMB43]
          Length = 749

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 103/295 (34%), Gaps = 36/295 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+  +    +G Q  +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDFR-RAQVYIEALIVELNSNTAGNLGIQWQV 423

Query: 220 TGS-----------------------SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDR 253
                                     ++G   S  A       S     +V     +   
Sbjct: 424 ASGALLAGTNLAATAGTIAGNSIINLTAGNGTSTGAGVAANLASLNQGLNVGWLHNMFGV 483

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308
                +L      +    L+ P L  +  + A    G      T S S   +  T     
Sbjct: 484 QGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTTNNAFN 543

Query: 309 ---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPS 364
                D G+ LH  P +   G + L++ TE S       NA   PS+  R   +T+   +
Sbjct: 544 TYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVETSTQNAVTGPSFTKRSIQSTILADN 603

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  IVL GL++D  Q     +PLL  IP LG LFR+    R++T + +   P ++
Sbjct: 604 GEIIVLGGLMQDSYQVANSKVPLLGDIPWLGQLFRSESKQRKKTNLMVFLRPVII 658


>gi|262401512|ref|ZP_06078079.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
 gi|262352227|gb|EEZ01356.1| MSHA biogenesis protein MshL [Vibrio sp. RC586]
          Length = 556

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 58/263 (22%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   +   +S+G +         K  S     +V   
Sbjct: 270 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISKDASGNPISAVLPG 329

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 330 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEFY 389

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 390 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 449

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 450 IVYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 509

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 510 LFRNTTKLTQKTELVILLKPTVV 532


>gi|258627001|ref|ZP_05721799.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|262172506|ref|ZP_06040184.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
 gi|258580675|gb|EEW05626.1| MSHA biogenesis protein MshL [Vibrio mimicus VM603]
 gi|261893582|gb|EEY39568.1| MSHA biogenesis protein MshL [Vibrio mimicus MB-451]
          Length = 558

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 97/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   +   +S+G +    +    +  S     +V   
Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGSGTISQDSSGNPISAVLPG 331

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534


>gi|326794354|ref|YP_004312174.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
 gi|326545118|gb|ADZ90338.1| type III secretion outer membrane pore, YscC/HrcC family
           [Marinomonas mediterranea MMB-1]
          Length = 713

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 83/227 (36%), Gaps = 9/227 (3%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++GF        SG +++     G     + G  +   + D   
Sbjct: 329 IEIDAIILDIDREKLSELGFNWQ---GGSGNTEAKINTSGADPFLKSGSSATVTIQDFDH 385

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  I  Q A          K+        +V+    G  
Sbjct: 386 FFAQIRALETDGDASLVANPSILTIENQPAIIDFNNTAFIKST--GERVANVSEITAGTS 443

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P ++       I L +  E  +     +  D PS       T   + +  ++V+ G
Sbjct: 444 LQVLPRLIDSEAERVIQLFLDIEDGDI-ESNSGADTPSVSKGSISTQAVIKTERSLVIGG 502

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              +   Q +  +PLL  +P +G LF  +     + E     TP LV
Sbjct: 503 FKVEQNTQRESKVPLLGDLPGIGKLFSYTSKAHSKRERLFIITPRLV 549


>gi|258623356|ref|ZP_05718360.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
 gi|258584322|gb|EEW09067.1| MSHA biogenesis protein MshL [Vibrio mimicus VM573]
          Length = 554

 Score =  163 bits (412), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   +   +S+G +         +  S     +V   
Sbjct: 268 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 327

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 328 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 387

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 388 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 447

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 448 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 507

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 508 LFRNTTKLTQKTELVILLKPTVV 530


>gi|119475553|ref|ZP_01615906.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
 gi|119451756|gb|EAW32989.1| Type II secretory pathway, component PulD [marine gamma
           proteobacterium HTCC2143]
          Length = 558

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 63/303 (20%), Positives = 112/303 (36%), Gaps = 26/303 (8%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           VL G     ++ +R +   +  +           ++++ +N   +    QV L+  I EV
Sbjct: 231 VLVGT----EEGRRVIVTPQAGIIIVRAMPAEIDAAREFLNRAEVIMRRQVVLEAKILEV 286

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL--DRFSFETVLHAL 263
             +   Q G Q    G +   +       G   VS          +      F  V+  L
Sbjct: 287 ELNDGYQTGIQWESMGGTLNGNTLDFGVSGSSPVSSNSVGGAFSAVYESVGDFSGVIELL 346

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------TGATSVTTHDY 312
           E   +++ L+ P ++ ++ Q A    G    + T  S+                +T    
Sbjct: 347 ETQGSVQVLSSPRISTVNNQKAVIKVGTDEFFVTEISNSTTTSTGATTSNPEIELTPFFS 406

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSE-------PVIGVNAGDMPS--YRVRKADTTVELP 363
           G+ L  TP +     I L I   +SE         +G    ++P     +R+ D+ V   
Sbjct: 407 GIALDVTPQISDNDEIILHIHPSISEVRDQTKVITLGDQTVEVPLALSTIRETDSIVYAR 466

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           SG  +VL GL++        G P+L  +P +G LF   R    + E+ I   P ++ P  
Sbjct: 467 SGQVVVLGGLMQTKSVDNNSGTPVLGNLPGVGHLFSQQRNKTVKNELVILLRPVIMGPSG 526

Query: 424 MRD 426
           + D
Sbjct: 527 LPD 529


>gi|167584994|ref|ZP_02377382.1| general secretion pathway protein D [Burkholderia ubonensis Bu]
          Length = 777

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 100/297 (33%), Gaps = 38/297 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T             + + V++ L+     QV ++  + E++      +G Q  +
Sbjct: 368 IQADAATNSLIITAPDPVYRNLRAVIDQLDAR-RAQVYIEALVVELQATTSGNLGIQWQV 426

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
             ++     +  +         G                             ++ +    
Sbjct: 427 ANNALFAGTNLPSGASISGAGLGNSIIDLTGRAATSPLTAVSALTPGLNIGWLRNMFGVQ 486

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATS 306
               +L     ++    L+ P L  +  + A    G      T         +      +
Sbjct: 487 GLGALLQYFAGSSDANVLSTPNLITLDNEEAKIVVGQNVPIPTGSYSNLTSGTGGNAFNT 546

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSYRVRKADTTVEL 362
               D G+ LH  P +   G + +++ TE    V   V        P++  R   +TV  
Sbjct: 547 YDRRDVGLTLHVKPQITDGGILKMQLYTEDSSVVQSTVSTSANSPGPTFNKRSIQSTVLA 606

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +G  IVL GL++D+       +PLL  IP +G LFR+   +R++T + +   P ++
Sbjct: 607 DNGEIIVLGGLMQDNYNTSNSKVPLLGDIPWIGQLFRSESKSRQKTNLMVFLRPVII 663


>gi|254254052|ref|ZP_04947369.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
 gi|124898697|gb|EAY70540.1| Type II secretory pathway component HofQ [Burkholderia dolosa
           AUO158]
          Length = 735

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 156/461 (33%), Gaps = 60/461 (13%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR  QR         +        + P         ++     I +   ++   ++ +  
Sbjct: 185 MRASQRRQ------SVRPQLSDALRKPVSLNFKQQPMSNIFDVISRVSGVNFVFDRDVDT 238

Query: 61  QVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ--- 108
             P     +   +             +  V    T+ ++                     
Sbjct: 239 SQPATLFAERTTAQDAINLLLRTNQLEKKVLDKHTLLVYPSQP--------DKRRNYTEF 290

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
            +    L   D   +   LR+ I   ++ V+   + +VL     T+Q +           
Sbjct: 291 AVRTFFLSHADAKSVMAALRQIIKPKDVYVDERVNAIVLRDTPDTVQVA----------- 339

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                        ++V+  L+I   + VTL V + EV  +    +G Q+      S  + 
Sbjct: 340 -------------ERVVMGLDIPQSE-VTLDVQVLEVNMNDSLDLGVQYPGKLQFSALAG 385

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
           +         +       +    +  +    +  L++    RTLA P +   + + AS  
Sbjct: 386 ADGGALTLGDLLRLNRDRIGVSSESGALSMAIDLLQKQGKTRTLANPKIRVRNMEKASIK 445

Query: 289 SGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGV 343
            G +    T +++ G    SV+  D G++L   P +     + +++  EVS         
Sbjct: 446 IGERVPIVTTTNANGVVTESVSYQDVGLMLKVEPRISLDDEVSVKVNMEVSSILSKETTK 505

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                 S   R A+T +   +G T +LAGL+K +      G+P +S +PI+G LF +   
Sbjct: 506 TGLVAYSLGTRNAETLMTARNGQTQILAGLVKRNETDNASGLPGVSGLPIVGRLFGSHGR 565

Query: 404 NREETEIFIAATPFLVK----PVAMRDLSRPDDHYSVEDDA 440
           + + +EI +  TP + +    P++            V  DA
Sbjct: 566 SHDRSEIVLLITPHIERNLDLPMSAVTTFLSGTETRVTTDA 606


>gi|124514518|gb|EAY56031.1| putative type II secretion system protein D [Leptospirillum
           rubarum]
          Length = 610

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 62/365 (16%), Positives = 117/365 (32%), Gaps = 47/365 (12%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +E TLR+ I  + +  +  + TV + G V+ +  +QR +++    L            
Sbjct: 271 DKMEGTLRKMIPKATVSADSKAQTVSVKGTVQDVFQAQRYLDIVRDQL------------ 318

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-SGPSKSFAADFGGKFV 239
                         +V  ++ IAE+        G   +         + +      G   
Sbjct: 319 ------------RREVFFRIDIAEIDLTDKDAYGINWNALAHGVFNSTLALTGAGAGNAG 366

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                         F    V+ ALE    +  + +P +  +SGQ  S  +     Y    
Sbjct: 367 LASTGGVTTPYGASFGSAAVIQALETIGRVHIINQPYVGTVSGQPVSLNATTDIPYLQGE 426

Query: 300 S----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------G 342
                      +     +     G+ L  TPT L   ++ +     V+           G
Sbjct: 427 YPFFAGGLSSATETIPQIGYVPVGINLEVTPT-LEGDQVHMHGTVVVNSLQQFVTIDIKG 485

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +     P    R   T +    G T+V+ GL+ +   +    +P L +IP+L  LF    
Sbjct: 486 IGTFQNPEVNSRSQTTEITARDGQTVVIGGLMANTKNKTFWSVPFLGQIPVLKWLFSGYS 545

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP-DDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           + ++ TE+ +  TP + +      LS P    +   D          ++ +       V 
Sbjct: 546 YKKQVTELVVIITPEIRR---TPRLSSPRTGDFLNPDSPVYRKSLPGSRPFSVPRLPRVP 602

Query: 462 GQNYK 466
           G    
Sbjct: 603 GYGSN 607


>gi|288818949|ref|YP_003433297.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|288788349|dbj|BAI70096.1| putative type IV pilus biogenesis protein [Hydrogenobacter
           thermophilus TK-6]
 gi|308752535|gb|ADO46018.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 592

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 61/264 (23%), Positives = 105/264 (39%), Gaps = 38/264 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADFGGKFV--- 239
             QV ++  I EVR   L+++G   +               +G   +         +   
Sbjct: 330 PVQVKIEARIVEVREQALRELGINWNVLLSQARVPQFWQGGAGQGANIGVAPAPGTIFVP 389

Query: 240 --------------------SEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLT 278
                               + GG F+        +     L ALER   I+ +A+PT+ 
Sbjct: 390 PDPTSVGPRSPIYYTPGLSQTPGGIFAFSYQKGMLNALNLRLSALERIAMIKNIAKPTVV 449

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            ++ Q A+   G Q  Y+T   + GA   ++   D  + L  TP V   GRI L     +
Sbjct: 450 TVNAQKATIKQGVQIPYQTTVVAGGAQAANIQFKDVVLQLDVTPVVSPDGRILLD--INL 507

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                G      P+   ++A T V +  G T+V+ G++ +   +  EG+P L ++P+L  
Sbjct: 508 KRDTPGEQTPQGPAINTKEASTKVVVNDGDTLVIGGIIDNQETKTNEGLPGLVRVPVLKW 567

Query: 397 LFRNSRFNREETEIFIAATPFLVK 420
           LF      + ++E+ I  TP LV+
Sbjct: 568 LFGQESSQKIQSELLIFLTPVLVR 591


>gi|15642863|ref|NP_227904.1| comE protein, putative [Thermotoga maritima MSB8]
 gi|4980577|gb|AAD35182.1|AE001695_8 comE protein, putative [Thermotoga maritima MSB8]
          Length = 1285

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 74/395 (18%), Positives = 149/395 (37%), Gaps = 45/395 (11%)

Query: 32   ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA---DVVVHSPRTMY 88
            A  A +     EI     IS+         V +  + + +     A    + + S    Y
Sbjct: 931  AEDAPLYDLLEEIASELGISVMF-------VSIPSEKITMKADNVAWEKFIDLISQNYGY 983

Query: 89   LFGKNVGQANVILIGHDGKQMLN-LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            LF    G   V ++    + +       +  +   ++  +        + V+ +++ +V+
Sbjct: 984  LFDNKNG---VYVVSKPKQDLARRYIYDVPHNFDQIKALIE--FYGGTVYVDSLNNFMVV 1038

Query: 148  HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
             G+  TI                             ++  L      Q+ +   I  V R
Sbjct: 1039 TGISETI-----------------------KRELDNIIEKLK-KPTKQIEISAKI--VDR 1072

Query: 208  DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
             ++ ++  +  +  +    +   +       V++  DF  + G +   +        +  
Sbjct: 1073 SLIDRLSKETGLELTGENVNVGSSGAEISFSVTDYLDFEKIFGEILNNTLSLQFSDQKTN 1132

Query: 267  TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ L  TP V S  
Sbjct: 1133 TLDDILASPRIVTTSGKEARILIGDRIPYVTDTNGDGTPEVQFLETGIELSITPFVRSDD 1192

Query: 327  RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             I L +  + SEP   +N  ++P  R R+A T + + +G TI + GL+++     +  +P
Sbjct: 1193 TIELDLFVKASEPGNYIN--EVPGERTREAQTHLIVKNGSTITIGGLIREVTNVTESKLP 1250

Query: 387  LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             L  +P++G  FR    N+E+ ++ I  T  +V+P
Sbjct: 1251 FLGDLPVIGQFFRTKSENKEKRDLVIFLTVRVVEP 1285


>gi|119773594|ref|YP_926334.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
 gi|119766094|gb|ABL98664.1| MSHA biogenesis protein MshL [Shewanella amazonensis SB2B]
          Length = 561

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/252 (22%), Positives = 98/252 (38%), Gaps = 26/252 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            QV L+  + EV      Q G Q +         G++     + A +  G  +S      
Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIQWNKIAGSALADGNTKINFATSAGNEFGNQISSALGGV 345

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302
               +    F+ +++ L+    +  L+ P +TA + Q A    G    + T  SST    
Sbjct: 346 TSLSIIGSDFDAMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGKDEYFVTDVSSTTVAG 405

Query: 303 ------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---------D 347
                     +T    G+ L  TP +   G + L +   V +                  
Sbjct: 406 TTPVTSPEVELTPFFSGIALDVTPQIDGQGNVLLHVHPSVIDVKEQTKTIKISNSDLELP 465

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +    +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +
Sbjct: 466 LAQSEIRESDTVIKAMSGDVVVIGGLMKSESLELVSKVPLLGDIPFLGEAFTNRSQSVRK 525

Query: 408 TEIFIAATPFLV 419
           TE+ I   P +V
Sbjct: 526 TELVILLKPTVV 537


>gi|262164147|ref|ZP_06031886.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
 gi|262027675|gb|EEY46341.1| MSHA biogenesis protein MshL [Vibrio mimicus VM223]
          Length = 558

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV L+  I EV      Q G   +   +S+G +         +  S     +V   
Sbjct: 272 RMHRQVILEAKILEVTLSDGYQQGINWNKAFTSNGTNYQIGTGTISQDSSGNPISAVLPG 331

Query: 248 ------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 332 LDAIGTLLGGQSNLVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 391

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 392 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKR 451

Query: 346 GD---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 452 ITYNSQQIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 511

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 512 LFRNTTKLTQKTELVILLKPTVV 534


>gi|288572884|ref|ZP_06391241.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288568625|gb|EFC90182.1| general secretion pathway protein D [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 659

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 87/514 (16%), Positives = 161/514 (31%), Gaps = 85/514 (16%)

Query: 20  NPSVAKLPPIKEANAAVINISDVE------IGKGKKISIGLNKVIILQVPVDVQDVLV-- 71
           +P  A+      A   V+ I   E       G    +   +N +  L VP  ++ +    
Sbjct: 160 SPGFAQKAVQPAAGKTVMVIPLDEGNGLLLTGPAADVQRVVNLLRALDVPDGIRRISAVP 219

Query: 72  ---SDPTKADVVVHSPRTMYLFGKNV-----GQANVILIGHDGKQMLNLDILIERDIAHL 123
              ++P          + +    K+      G   +            L ++ +      
Sbjct: 220 VKEANPDLL------AQHLANLAKDPTGPFRGLTAL-----SDSSSRTLLLVGDSSALES 268

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              + + +    +  E     +         +   + + ++                   
Sbjct: 269 AKKIVKRLDVPPVSGEFHVYRLKNADAQEVAKQLSQILGVAARLQPGKEGAMPTTVVPDI 328

Query: 184 VMNLLNIAG------------------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             N L  A                     QV ++  IAEV    LK  G   +  G    
Sbjct: 329 PTNSLIFAVQEQQYAGLIDIIKQLDIQPKQVMVRGLIAEVNLTNLKNAGIDWATWGGQVS 388

Query: 226 PSKSFAADFGGKFVSEGGDFSV---------------------------KGVLDRFSFET 258
            S  FAA+      +      V                                      
Sbjct: 389 GSTVFAANAALGGSTGVPSTFVDWFQDLSKKETYEWITPETGEPYREKTTVYEGNSLIYA 448

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSVTTHDY 312
            +  L++  A+  L+ P L     + +S   G        S+S          S    D 
Sbjct: 449 YVQLLKKYDAMNILSMPRLMCTDNKESSLMVGQTIPQMKASTSDISNPSSVQNSYDYKDT 508

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L  TP + S   + L I+   +E V+       P    R+  T+V++ +G TI+L G
Sbjct: 509 GLKLKITPHIRSGNLVALDIEQS-TEEVLSAMTSTTPVTAKREVKTSVQVRNGETIILGG 567

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           LLK+  + LK+ +P+LS IP++G LF++S   RE+ E+ +  TP++   +   + +    
Sbjct: 568 LLKETEKSLKQRVPILSYIPLVGELFKSSTNQREKIELMVFLTPYI---LETPEAATEAS 624

Query: 433 HYSVEDDAKAFFFN---RVNKIYGPKEASEVEGQ 463
                 D          R+N+ +       V+ Q
Sbjct: 625 KAVAASDTDLGLSEAEIRLNRRFQEMYREAVKKQ 658


>gi|94266027|ref|ZP_01289748.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93453422|gb|EAT03844.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ L      QV ++  I EV      + G   +   S            G  +  +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G    +  +    FE +L A+E       L+ P ++ ++GQ A    G    Y   
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLEAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440

Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342
           +SST             T   G+ +   P ++    I L +    ++   G         
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P   +R+  T V + +G T+++ GL+ +      + +PLL  IP LG LFR+  
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560

Query: 403 FNREETEIFIAATPFLV 419
            ++E+ E+ I   P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577


>gi|291613156|ref|YP_003523313.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
 gi|291583268|gb|ADE10926.1| pilus (MSHA type) biogenesis protein MshL [Sideroxydans
           lithotrophicus ES-1]
          Length = 614

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 59/328 (17%), Positives = 124/328 (37%), Gaps = 44/328 (13%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGE 193
             S    +     T+Q + +         ++        +++++       ++ +  A  
Sbjct: 260 TGSGNEDVSSQASTVQQTGKYEPAVNVNANKETGVLIVRATARQHKKIQEFIDKVMTAAR 319

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++ TIAEV      Q G   S                 G   S  G        + 
Sbjct: 320 RQVLIEATIAEVTLSRNYQQGINWSALALGGKGFSLTQLATAGLPSSNTGSMVTLAYNNA 379

Query: 254 F----SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
                +    +  L+    ++ L+ P L+ ++ Q+A+       +Y T++ + G+T+ T 
Sbjct: 380 TSKVGNLSGAVQLLDSFGDVKVLSSPKLSVMNNQTATLKVVDNKVYFTITVTPGSTNGTI 439

Query: 309 -----------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------------- 344
                          G  ++ TP +     + + ++  ++  +  VN             
Sbjct: 440 VTPPTFSTTAVPVAVGFTMNVTPEINDSDYVTINVRPTITRIIDYVNDPNPNLANPCGTG 499

Query: 345 ---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                       +P  R R+ ++ + + SG   VL GL++D+I    +G+PLL +IP +G
Sbjct: 500 VTSCAVAAIVNRVPEIRTREMESIIRVSSGQIAVLGGLMQDEINNQSDGVPLLDEIPGIG 559

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVA 423
           +LF+N    + +TE+ I   P ++K  +
Sbjct: 560 SLFKNRNDTKTKTELVIFLRPVIIKDAS 587


>gi|157963580|ref|YP_001503614.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
 gi|157848580|gb|ABV89079.1| pilus (MSHA type) biogenesis protein MshL [Shewanella pealeana ATCC
           700345]
          Length = 556

 Score =  162 bits (411), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 94/249 (37%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV L+  + EV      Q G         +G +           + +    ++ GV   
Sbjct: 284 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDISFGTSPAAGLGDTITNALGGVTSI 343

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
                 F T++  L+    +  L+ P +TA + Q A    G    +              
Sbjct: 344 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGNTP 403

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352
            +T    +T    G+ L  TP +   G + L I   V +    V +  +           
Sbjct: 404 VTTPEVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQVKSIKIADSTLELPLAQ 463

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE+
Sbjct: 464 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPFLGEAFTNRANSTVKTEL 523

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 524 VILLKPIVV 532


>gi|134294193|ref|YP_001117928.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
 gi|134137350|gb|ABO53093.1| general secretion pathway protein D [Burkholderia vietnamiensis G4]
          Length = 774

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/293 (18%), Positives = 102/293 (34%), Gaps = 34/293 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+       +G Q  +
Sbjct: 375 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 433

Query: 220 TGSSSGPSKSFAADFG------------GKFVSEGGDFSVKGVLDRFS------------ 255
                    +     G                + G   ++  +    +            
Sbjct: 434 ASGQFLGGTNLNPTSGLGNSIVNLTAGTAGATTPGLAANLGTLTQGLNIGWLHNLFGVQS 493

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSV 307
              +L      +    L+ P L  +  + A    G              + ++S    + 
Sbjct: 494 LGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYLNLTSGTTSNAFNTY 553

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGG 366
              D G+ LH  P +   G + L++ TE S  V    +A   P++  R   +T+   +G 
Sbjct: 554 DRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVAGTTSAQTGPTFTKRSIQSTILADNGE 613

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 614 IIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRAKTNLMVFLRPVII 666


>gi|253996449|ref|YP_003048513.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983128|gb|ACT47986.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 659

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 78/425 (18%), Positives = 157/425 (36%), Gaps = 51/425 (12%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
           S  K P   E     +      IGK   I+   ++ +          + V D    D   
Sbjct: 188 SAFKKPITLEFKNVSVRSVFEFIGKAANINFSYDQELR---DNQRTSIFVRDTPIEDAIQ 244

Query: 80  VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIAD 133
           V+ +   +    K V     +++      Q      +    +  ++       ++  +  
Sbjct: 245 VILTTNQL---AKKVLNDNTLLIYPVSRSQEYQELYVRSFYLNSIDAKRAMNLIKTVLKS 301

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            ++ ++   +T+V+     +I       E++E  ++     +                  
Sbjct: 302 KDVYIDEKLNTLVMRDTAESI-------EIAEKLIASQDLIEPE---------------- 338

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
             V L+V + E+ R  L+ IG ++       + G +S    S                S 
Sbjct: 339 --VMLEVEVMEINRRSLENIGVRYPSQVSVGVQGKTSSNGVSTNTPGRLSLAELKNFNSG 396

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---A 304
            GV         L+ L + T    LA P +   + + A    G +    T  +++    +
Sbjct: 397 LGVFTISDPVLALNLLHQDTDTNLLANPQIRVKNREKAKIHVGDKIPVFTSVANSTGFVS 456

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVE 361
            +V   + G+ L   PT+L   ++ +++  EVS               +   R A+TT++
Sbjct: 457 QTVNYLEVGIKLDVEPTILLQDQVNIKVGLEVSNITDQVKTDTGVLAYTIGSRNANTTLQ 516

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L +G T +LAGL +DD Q +   +P LS +P +G LF +   ++ + EI +  TP ++  
Sbjct: 517 LKNGETQILAGLFRDDGQNISNKVPGLSSLPFIGRLFTDKNNDKRKNEIVLLITPRILHN 576

Query: 422 VAMRD 426
           +A  +
Sbjct: 577 IAPAN 581


>gi|298529582|ref|ZP_07016985.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511018|gb|EFI34921.1| type IV pilus secretin PilQ [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 569

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/264 (20%), Positives = 99/264 (37%), Gaps = 14/264 (5%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +++   + +   +   S  +++  L++     E QV ++  +        +++G     
Sbjct: 312 RVTQDARTNTLIVRDTPSQLEEITQLIDNLDRPERQVLIEARVVYATESFRRELGVDWGF 371

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAE 274
              S G   +  +     F S+       G +          E  L   E      T++ 
Sbjct: 372 AYQSPGLDSNIISPDTFNFPSDLEGLLGVGYMGHEGQSFSVLEARLRLGESQGKSNTISA 431

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +  ++ Q A     G  +   V  +   T        + L  TP +     + L    
Sbjct: 432 PQIMTLNNQEAKIE-QGTDVAVDVIDADLRTRREYVPATLELIVTPQITPDNNLIL--NL 488

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS+   G          V+KA+TT+    G TIV+ G+ K    Q + GIP LS++PIL
Sbjct: 489 EVSDNAPGEGGN----IEVKKAETTLFAEDGETIVIGGIKKLSESQRETGIPPLSRLPIL 544

Query: 395 GALFRNSRFNREETEIFIAATPFL 418
           G LF++        E+ I   P +
Sbjct: 545 GWLFKHELVEENMDELLIFIRPKI 568


>gi|288942750|ref|YP_003444990.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
 gi|288898122|gb|ADC63958.1| type IV pilus secretin PilQ [Allochromatium vinosum DSM 180]
          Length = 787

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 49/285 (17%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
           +V+NLL++A   QV ++  +        + +G +  ++GS                    
Sbjct: 499 RVVNLLDVAVR-QVMIESRVVIANNSFARDLGVRFGVSGSMGKVGDNEVLIGGGQNGYLA 557

Query: 224 --------SGPSKSFAADFGGKFVSEGGDFSVK--------------------GVLDRFS 255
                    G + S    +      + G+ ++                     G +  + 
Sbjct: 558 VGDYDSGPFGLNASTGTPYNSTLTDDAGNATLITNLPATTIQDAASGSIDFLIGKVGSYL 617

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L A++R      ++ P +       A+   G +  Y+   S  G TS+   +  + 
Sbjct: 618 IQLELSAMQREGRGEIISSPRVITADKNKATIKVGSEIPYQ-EQSGQGNTSIAFKEAVLQ 676

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +    RI + ++     P    +  + P    R   T V + +G T+VL G+ +
Sbjct: 677 LDVTPQITPDDRIIMDLEVRKDRPDWSRSINNTPPIDTRSVKTNVVIDNGETVVLGGVFE 736

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +    KE +P L  +P+LG LF+        TE+ I  TP ++K
Sbjct: 737 REKTFSKEQVPWLGDVPVLGRLFKQEARQDSNTELLIFVTPKILK 781


>gi|154249944|ref|YP_001410769.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
 gi|154153880|gb|ABS61112.1| type II and III secretion system protein [Fervidobacterium nodosum
            Rt17-B1]
          Length = 1519

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 90/239 (37%), Gaps = 9/239 (3%)

Query: 191  AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                 V++   I +  R+          +   +     S         +       +  +
Sbjct: 1277 TTPKIVSIDARIIDESRNGSLSEEIVTLLKAGNYLTFGSNGLTLNVSLLDILDGSIIDKI 1336

Query: 251  LDRFSFETVLHALER-------ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            L+       L   E+       +   + LA P +   SG+ A    G     K VS+S G
Sbjct: 1337 LNEAGISLDLRGAEQGTPFRATSGIGKLLANPNIMTKSGEEARIFIGDSIPLKIVSTSGG 1396

Query: 304  ATSVTTHDY--GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             T+        G+ L   P V +   I L I T VS     V    +P    R A T + 
Sbjct: 1397 QTNEQVISLEGGIELKIVPYVNADNTIDLVITTSVSNFDYSVLVNGLPKINKRDASTKIT 1456

Query: 362  LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G T+V+ GL +++  + +  +P+L  IPILG LFR ++   E+  I I  T  +V 
Sbjct: 1457 IKDGQTLVIGGLSREEKSKSEWKVPILGDIPILGYLFRGTKEASEQRSITIFLTAKIVD 1515


>gi|94266705|ref|ZP_01290378.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
 gi|93452646|gb|EAT03209.1| type II and III secretion system protein [delta proteobacterium
           MLMS-1]
          Length = 577

 Score =  162 bits (411), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 99/257 (38%), Gaps = 19/257 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++ L      QV ++  I EV      + G   +   S            G  +  +
Sbjct: 321 EEYLDNLQQQLFRQVIIEAKIIEVTLSDEHRSGIDWTNVLSGKQLDFELFGPDGIIYHPD 380

Query: 242 G---GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
               G    +  +    FE +L A+E       L+ P ++ ++GQ A    G    Y   
Sbjct: 381 RDQRGRGVSQISIGPNPFELLLDAIETQGETNVLSNPRISIMNGQPALINVGETVRYIAE 440

Query: 299 SSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--------- 342
           +SST             T   G+ +   P ++    I L +    ++   G         
Sbjct: 441 ASSTIQDQGVTHNIITGTVMSGLSMSVLPIIVDDNEIILSMTPMTTQLAPGPIPREKFGD 500

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P   +R+  T V + +G T+++ GL+ +      + +PLL  IP LG LFR+  
Sbjct: 501 NMLVQLPQINIREMQTMVRVANGDTLMIGGLIDEYETTESKRVPLLGDIPGLGKLFRHDT 560

Query: 403 FNREETEIFIAATPFLV 419
            ++E+ E+ I   P ++
Sbjct: 561 RSKEKKELVIMLRPRIL 577


>gi|224373284|ref|YP_002607656.1| general secretory pathway protein D [Nautilia profundicola AmH]
 gi|223589728|gb|ACM93464.1| general secretory pathway protein D [Nautilia profundicola AmH]
          Length = 445

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 54/261 (20%), Positives = 93/261 (35%), Gaps = 19/261 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              +    +  K +N +      +V + V I  V      + G   S        +    
Sbjct: 174 TGTKKQIDAIDKYINTMLNRLTKEVLIDVKIYTVELSKSHKTGIDWSQLSIQLNRTDVPL 233

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                   +  G          FS   +L+ L +   + +L+ P +  ++ Q A  + G 
Sbjct: 234 RG------TYIGGAQSVFSDATFSVVGLLNFLAQNGNVNSLSNPKVVTLNNQKAIISVGD 287

Query: 292 QHLYKTVSSSTGATS--------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---- 339
              YK  S  T   +        + +   GVVL  TP +   G I L I   +S      
Sbjct: 288 TIYYKYASKVTTDQNGNPNTEYTIDSKFVGVVLDITPQISDNGDIILSIAPRISAFKDLT 347

Query: 340 VIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +     DMP         + V+L    T+VL GL+ +D      G+P+L +IP++  LF
Sbjct: 348 QLSNTTRDMPPDTKDNTMLSVVKLKDNQTLVLGGLITNDKTLQVNGVPVLKEIPLIKYLF 407

Query: 399 RNSRFNREETEIFIAATPFLV 419
            +        E+    TP ++
Sbjct: 408 SSREEVTSRKELVFVITPHII 428


>gi|114798909|ref|YP_761208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
 gi|114739083|gb|ABI77208.1| type II secretion system protein [Hyphomonas neptunium ATCC 15444]
          Length = 694

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 57/273 (20%), Positives = 101/273 (36%), Gaps = 24/273 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV ++ TI EV       +G Q  +       + +         +  G   S      
Sbjct: 438 KRQVLIEATIVEVSLTDGTSLGVQWDLVQDRLSATFTDTGSGDLTSLFPGVSVSYI---- 493

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305
                 V++AL   + +  ++ P +  ++ ++A    G Q           +   +    
Sbjct: 494 NTDIAAVINALAATSDVEIVSSPRMLVLNNETARLQVGDQVPIITQSAVSVSDPGAPVVN 553

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPS 364
           S T  D GV+L  TP + + G + + I  EVS       ++ D P+   R   + + +P 
Sbjct: 554 STTYRDTGVILTVTPRIRAGGMVEVDISQEVSGVSETTTSSIDSPTISQRSIQSVLAVPD 613

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T VL GL+       + GIP+L   P+LGA FR++  +   TE+ +   P +V     
Sbjct: 614 GSTAVLGGLMSSTRSYSRTGIPILKDTPVLGAAFRSTNQSERRTELIVLIEPTVVVSEEP 673

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
                         D  A     + +  G    
Sbjct: 674 S------------SDIPALLRAALVRARGAPAT 694


>gi|285019110|ref|YP_003376821.1| type IV pilus assembly protein pilq [Xanthomonas albilineans GPE
           PC73]
 gi|283474328|emb|CBA16829.1| probable type iv pilus assembly protein pilq [Xanthomonas
           albilineans]
          Length = 639

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 98/271 (36%), Gaps = 34/271 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222
           +++N+++    DQV ++  I        + +G +  + G                     
Sbjct: 364 ELINVID-RPVDQVLIEGRIVIATDTFARDLGARFGVAGRRSYGSNTGVVSGNLADNSSI 422

Query: 223 ------SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                 +     +     G       G  +   +   FS +  L AL+       ++ P 
Sbjct: 423 LNNSLHNIPNGLNVNLPAGTFTTGNAGAIAYTLLGANFSLDMELSALQEEGRGEVISNPR 482

Query: 277 LTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +   + + A    G       +      +    +V   +  + L  TPT+    R+ L +
Sbjct: 483 IVTSNQREAVIRQGKDIAYVTITGGTGGAAATPNVQFKEVLLELKVTPTITDDNRVFLNM 542

Query: 333 QT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                EV   V   N G +P    R+ +T V +  G T+V+ G+ +   +     +P L 
Sbjct: 543 NVKKDEVDHYVTLQNYGTVPEINRREINTAVLVDDGQTVVIGGVYEFTNRNSLAKVPFLG 602

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P LG LF+    ++ + E+ I  TP +++
Sbjct: 603 DVPFLGNLFKQRGRSKAKAELLIFVTPKVMR 633


>gi|206561863|ref|YP_002232628.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
 gi|198037905|emb|CAR53850.1| type II secretion system protein D [Burkholderia cenocepacia J2315]
          Length = 777

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 98/272 (36%), Gaps = 36/272 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-------------------- 222
            V++ L+     QV ++  I E+      Q+G Q  +                       
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGQLGIQWQVASGQFLGGTNLAAAAGNVAGNSI 457

Query: 223 ---SSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPT 276
              ++G + S  A             ++     +        +L      +    L+ P 
Sbjct: 458 INLTTGTAGSTGAGLAANLSGLNQGLNIGWLHNMFGVQGLGALLQYFSGVSDANVLSTPN 517

Query: 277 LTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
           L  +  + A    G              + ++S    +    D G+ LH  P +   G +
Sbjct: 518 LITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGIL 577

Query: 329 GLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L++ TE S       +A   P++  R   +T+   +G  IVL GL++D+       +PL
Sbjct: 578 KLQLYTEDSAVVSGTTSAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYAVSNSKVPL 637

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP +G LFR+    R++T + +   P ++
Sbjct: 638 LGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 669


>gi|120609694|ref|YP_969372.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
 gi|120588158|gb|ABM31598.1| type IV pilus secretin PilQ [Acidovorax citrulli AAC00-1]
          Length = 715

 Score =  162 bits (410), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 58/336 (17%), Positives = 122/336 (36%), Gaps = 50/336 (14%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIA 191
           +++  ++ +++    G   T   S+R   ++E   +Q       +   +  ++++ L++A
Sbjct: 383 ADMVTQLANNSTGSTGT-STRFLSERGSAIAEPRTNQLFVTDTPSKLEEVRQLLSTLDVA 441

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHS--------------------------------I 219
              QV ++  I E R    + +G +                                   
Sbjct: 442 VR-QVMIEARIVEARDTFGRSLGVRLGGADLRANRGGDGGYSVGGNNRLAIGTSYNNAVA 500

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV-----------LHALERATA 268
           +  + G   + +   G  FV+     S       F+               L A+E    
Sbjct: 501 SSGAGGTVATGSDAAGSTFVNLPAALSSGASFGNFALTLFNSAANRFLTLELSAMEADGQ 560

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + ++ P L       A    G ++ Y   +   GAT++      + L  TP +   G I
Sbjct: 561 GKVVSSPRLITADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGNI 619

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L +  +V++   G       +       T V + +GGT+V+ G+ + +    +  IPLL
Sbjct: 620 ILDL--DVNKDSKGETTTQGVAIDTNHVKTQVLVENGGTVVIGGIFRLEETNQENKIPLL 677

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
             +P++G LF+N      + E+ +  TP ++     
Sbjct: 678 GDVPVVGNLFKNRTRESTKREMLVFITPKVISDKGP 713


>gi|254483140|ref|ZP_05096374.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
 gi|214036662|gb|EEB77335.1| general secretion pathway protein D [marine gamma proteobacterium
           HTCC2148]
          Length = 727

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 105/282 (37%), Gaps = 13/282 (4%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G      + +   +     L     +         +  L  +A   QV ++ +I EV 
Sbjct: 418 VTGSGDETAEVRVVADDENNSLMIYATSMQYKVIKTALDQLDVVAT--QVIIEASIIEVS 475

Query: 207 RDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                + G + + + S      G     +        S    FS        +   VL+A
Sbjct: 476 LTDELRYGLEWTFSNSLGADYDGSGFLSSIAGAESPASIVPGFSYTVTNSIGNVSAVLNA 535

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVV 315
           L   + +  ++ P++  +    A    G Q       + +          S+T  D GV 
Sbjct: 536 LAEESLLNIISTPSVMVLDNHYAYIHVGQQVPIIDSQTGSLANDTDRVTQSITYRDTGVK 595

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L   P+V + G I + +   V++      A    ++  R  ++ V + S  ++VL GL++
Sbjct: 596 LDVRPSVNAGGLITMDVAQSVTDVGEIDAATGQRAFLERNIESRVAVRSNESVVLGGLIR 655

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           ++     +G+P L  +PI+G+LF         TE+ +  TP 
Sbjct: 656 ENSGTASQGVPWLHSVPIVGSLFGTDSARSNRTELLVIITPR 697


>gi|77918000|ref|YP_355815.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544083|gb|ABA87645.1| type II and III secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 537

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 69/334 (20%), Positives = 123/334 (36%), Gaps = 41/334 (12%)

Query: 128 RRFIADSNIRVEMVSD-----TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
              ++ S I  E  +D     +V L   +   +D +R V   +  +           + +
Sbjct: 170 NAMVSGSRIDTESSADFWTELSVALR-TMVGQEDGRRVVIQPQAGVVVVRALPEELRTIE 228

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--------------- 227
           + +  +    + QV L+  I EV      Q G   S        +               
Sbjct: 229 QYLGTIQGNLQRQVILEAKILEVELGDGYQAGINWSAVNGDVSMAQTRGDIFADNGLADI 288

Query: 228 -KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S  A       S          L+  +F+  +  LE    ++ L+ P +  ++ Q A 
Sbjct: 289 VGSDGAAVTSGLASGAFGGVFSAALNFKNFQAFIELLETQGDVQVLSSPRIATVNNQKAV 348

Query: 287 FTSGGQHLYKTVSSST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
              G    + T  SS              ++T    G+ L  TP +   G++ L I   V
Sbjct: 349 IKVGSDEFFVTDVSSDTVTGTTTTTSPDITLTPFFSGIALDVTPQIDPKGKVTLHIHPTV 408

Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE         +             VR++D+ V   SG  +V+ GL+KD +Q     +PL
Sbjct: 409 SEVSDQTKDITVAGETQTLPLAFSTVRESDSIVAAESGQVVVIGGLMKDQLQNRDASVPL 468

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L ++P +GALFR+++    ++E+ I   P +V+ 
Sbjct: 469 LGRLPGVGALFRHTQSVSRKSELVILLRPMVVEA 502


>gi|291286288|ref|YP_003503104.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883448|gb|ADD67148.1| type II and III secretion system protein [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 509

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/243 (22%), Positives = 95/243 (39%), Gaps = 19/243 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++  + EV  +     G     T        S   D G   +   G  +  G +  
Sbjct: 267 KQVLIEAKLVEVTLNDTSAYGINWRGTADGKSIGLSLGTDGGAAVLP--GGLTAVGAISS 324

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY- 312
           F +      +     + ++  P +  ++GQSA  TSG    +  +   T   +       
Sbjct: 325 FDYSDWFAFMAAYGRVESVGNPRIRVMNGQSAMITSGQLKPFWEMERETDDDTDDVTVTY 384

Query: 313 -------GVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKA 356
                  G++L  TP V   G I L I    S+            GV     P+  +++A
Sbjct: 385 TRVTVLDGIMLGVTPHVKEDGTITLNIVPVFSDVEETPEQQLDENGVVVASYPNINLKEA 444

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T + L SG T+V+ GL+ +   + +  +PLL  +P LG LF++     ++ E+ I  T 
Sbjct: 445 GTVLNLESGSTVVMGGLISNVETEDETKVPLLGDVPFLGYLFKSKYKYTQKRELVIFLTA 504

Query: 417 FLV 419
            ++
Sbjct: 505 TII 507


>gi|317052313|ref|YP_004113429.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316947397|gb|ADU66873.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 683

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/454 (18%), Positives = 148/454 (32%), Gaps = 74/454 (16%)

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
           P  +Y      G   + +   DG  +++ +      + +L       +   +      + 
Sbjct: 107 PEALYAVATAAG---LQITSRDGTLVISSNDFRTFTLDYLAQG--AVLPGQSFSPLNSAP 161

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSG------------------RNQYANSSSKKVM 185
            V L        + QR   +    LS                      N  A    +  +
Sbjct: 162 -VYLTDSAH-ASERQRIWNVIRENLSSLASEDGRVIINDLTGTILVSDNASAMRRIEAYL 219

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           +++    + QV + V I ++       +G  +S     SG     A +  G     G   
Sbjct: 220 DMVRRLYDQQVEISVRILQISLSDSLTMGVDYSALFRVSGSDTPIAFNLHGTEGQAGASL 279

Query: 246 S-----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                         GVL+   F   L  L     + TL+ PT+T ++  + +  S   + 
Sbjct: 280 DGTAGERGVLDYTVGVLNPGKFAGFLQFLSLHGTVHTLSNPTITTLNNVTGNVYSIRTYP 339

Query: 295 YKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGV 343
           Y+  ++ +        T       GV L  TP +++ G I L +   V            
Sbjct: 340 YQVTTTESSANVREARTYFEDVKIGVSLTVTPNIVNNGDILLEVLPVVGEIYEENFNPAS 399

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P    +   T +   +  +  + GL+ +   +   GIP+LS+IP+LG LFR+ R 
Sbjct: 400 GEREKPQTVEQAIRTILRTRNNHSYFIGGLIYEKNVESTSGIPVLSRIPVLGRLFRSDRR 459

Query: 404 NREETEIFIAATPFLV---------------KPV--------AMRDLSRPDDHYSVE--- 437
            +   E+ I  TP ++                P+        A        D ++     
Sbjct: 460 VQSRQELVIVLTPKIIPSLDSHSAGPVDYHSTPLHYGLLEYQAGARAPLALDDHAPPLTN 519

Query: 438 DDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           DD   FF  R     G  E +       + A+GF
Sbjct: 520 DDLAYFFLQRGLDALGAGE-NLQALSMLQSALGF 552


>gi|298369928|ref|ZP_06981244.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298281388|gb|EFI22877.1| type IV pilus secretin PilQ [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 715

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/271 (19%), Positives = 103/271 (38%), Gaps = 30/271 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP---------------- 226
           K+++ L++    QV ++  I E      + +G +    G+ S                  
Sbjct: 444 KLIDELDVPTR-QVMVEARIVEAEEGFSRNLGVKFGAAGAGSRNAWGSNWSNAQNNNNTN 502

Query: 227 -----------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                      + S   +      S     ++   L   +    L A E     +TL+ P
Sbjct: 503 ASFNRGEVGYRTWSLDPNVSLPTASATSSIALVRSLSSGALGLELSASEELGKSKTLSNP 562

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            +     + A   SG +  Y+  +SS GATSVT     + L  TP +   G+I + ++  
Sbjct: 563 RVLTQDRKEAIIESGTEIPYQEATSS-GATSVTFKKAVLGLTVTPNITPDGQIIMTVKIN 621

Query: 336 VSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
              P     +         +  +T   +  GGT+++ G+ +++       +PLL  IP++
Sbjct: 622 KDSPIDCQTDGLRTKCISTKNLNTQAMVEDGGTLIVGGIYEEENSNAVNKVPLLGDIPVV 681

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G LF++   +    E+ I  TP ++  V   
Sbjct: 682 GNLFKSRGRSERRRELLIFITPRIMDGVGSN 712


>gi|257459465|ref|ZP_05624574.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
 gi|257442890|gb|EEV18024.1| type II and III secretion system protein [Campylobacter gracilis
           RM3268]
          Length = 502

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/307 (17%), Positives = 111/307 (36%), Gaps = 27/307 (8%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           +V+ +G  + +  +    + +   L      +   +   + ++ +      QV L V I 
Sbjct: 180 SVLNNGTEKYVAVAPIINQNAG--LVTVTAMKSQIARVDRYLSGMQKRLSRQVLLDVNII 237

Query: 204 EVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V  +     G   S                 S     +      S+       G    F
Sbjct: 238 SVELNNEYTTGIDWSKFQLGFNTYVGGDPTKLSGYHIDNGNRGKASDTHGTWTIGANLNF 297

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------- 306
           + + +++ LE     + ++ P +T ++ Q A  + G    Y   S++TG           
Sbjct: 298 NIDGLINFLETKGKTKIISSPKVTTMNNQPAIISVGDTINYVLKSTTTGDYQGGDTQSDD 357

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADT 358
             +   G++L+  P +    RI LRI   +S      +            P    +K  +
Sbjct: 358 QYSIFVGILLNILPEISDDNRIMLRINPSLSSLKYAEDNVRKENGRRDIAPDTLQKKLSS 417

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V +  G T++L GL+     +    +P+L++IP++G LF+++      +E+    TP +
Sbjct: 418 VVWVDDGDTVILGGLIGATKSKNNTRVPVLAEIPLIGNLFKSTADILSTSELIFVVTPHI 477

Query: 419 VKPVAMR 425
           +      
Sbjct: 478 IDNTGAP 484


>gi|531740|emb|CAA56979.1| xcpQ [Pseudomonas putida]
          Length = 591

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 26/266 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK- 237
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 276 AAYRAIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 334

Query: 238 -------------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                + G    +      F+F  +++AL+  +    L+ PTL 
Sbjct: 335 ANIAGAAAGEDTEALGKLLSATAGATAGIGHFGGGFNFAMLVNALKGKSGFNLLSTPTLL 394

Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P +     + L I  
Sbjct: 395 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQINIDNSVRLDIVQ 454

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       A D+     R+  T V +   G ++L GL+ D++    + +PLL  IP L
Sbjct: 455 EVSSIADSSAASDV-ITNKREIKTKVMVEDNGLVILGGLISDELSTSNQRVPLLGDIPYL 513

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR+      +  + +   P +++
Sbjct: 514 GRLFRSDASKNTKQNLMVFIRPRILR 539


>gi|21230145|ref|NP_636062.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66769864|ref|YP_244626.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|129748|sp|P29041|GSPD_XANCP RecName: Full=General secretion pathway protein D; Flags: Precursor
 gi|155391|gb|AAA27615.1| XpsD precursor [Xanthomonas campestris]
 gi|21111677|gb|AAM39986.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66575196|gb|AAY50606.1| general secretion pathway protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 759

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/312 (24%), Positives = 124/312 (39%), Gaps = 33/312 (10%)

Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           G V    +  +     ++ET       +  A  S + V+  L++    QV ++  IAEV 
Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVT 490

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255
                Q G       + + PS +  +       + G               V       +
Sbjct: 491 LTGRLQYGVNWYFENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKN 550

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309
              ++ AL++ T +R L  P++   +   A+   G +    + S +TG       +SV  
Sbjct: 551 AAAIISALDQVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKAD 357
            D GV+L   P V   G + L I  EVS P     A    +               R+  
Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVK 670

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   + +G TI+LAGL+ D       GIP LSK+P++GALF     N +  E+ +  TP 
Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPS 730

Query: 418 LVK-PVAMRDLS 428
           +V+ P   RDL+
Sbjct: 731 IVRNPQDARDLT 742


>gi|167625758|ref|YP_001676052.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
 gi|167355780|gb|ABZ78393.1| pilus (MSHA type) biogenesis protein MshL [Shewanella halifaxensis
           HAW-EB4]
          Length = 557

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 96/249 (38%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV L+  + EV      Q G         +G +           +S+     + GV   
Sbjct: 285 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQISSVLGGVTSI 344

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
                 F T++  L+    +  L+ P +TA + Q A    G    +              
Sbjct: 345 KLEGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTNVSSTTVASNTP 404

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYR 352
            +T    +T    G+ L  TP +   G + L I   V +            +  ++P  +
Sbjct: 405 ITTPDVELTPFFSGIALDVTPQIDEQGNVLLHIHPSVIDIKEQTKIIKISGSTLELPLAQ 464

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT ++  SG  +V+ GL+K +  ++   +PLL  IP LG  F N   +  +TE+
Sbjct: 465 SEIRESDTVIKAASGDVVVIGGLMKSENTEIVSKVPLLGDIPFLGEAFTNRANSTVKTEL 524

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 525 VILLKPIVV 533


>gi|167571805|ref|ZP_02364679.1| general secretion pathway protein D [Burkholderia oklahomensis
           C6786]
          Length = 743

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  + E+       +G Q  +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259
             ++     +      G   S     +                                +
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITNLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311
           L      +    L+ P L  +  + A    G      T         +++    +    D
Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370
            G+ LH  P +   G + L++ TE S  V G   +   P++  R   +TV   +G  IVL
Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GL++D+ Q     +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652


>gi|127511323|ref|YP_001092520.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
 gi|126636618|gb|ABO22261.1| pilus (MSHA type) biogenesis protein MshL [Shewanella loihica PV-4]
          Length = 563

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/250 (23%), Positives = 100/250 (40%), Gaps = 24/250 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP-----SKSFAADFGGKFVSEGGDFSVK 248
            QV L+  + EV      Q G         SG        S A D  G  ++        
Sbjct: 288 RQVILEAKVLEVTLSDGYQQGIHWESVLGQSGNNSIEFGTSPAPDGLGDVITSAIGGITS 347

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
             +    F T+++ L+    +  L+ P +TA + Q A    G    + T  S        
Sbjct: 348 LQIKGKDFSTMINLLDTQGDVDVLSSPRVTASNNQKAVIKVGRDEYFVTDVSSTTVAGTT 407

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSY 351
             +T    +T    G+ L  TP +   G + L I   V +         +  +  ++P  
Sbjct: 408 PVTTPEVELTPFFSGIALDVTPQIDEEGSVLLHIHPSVIDIKEQNKSIKVSDSTLELPLA 467

Query: 352 R--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +  +R++DT ++  +G  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE
Sbjct: 468 QSEIRESDTVIKANTGDVVVIGGLMKSENIELISKVPLLGDIPFLGEAFTNRSNSLRKTE 527

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 528 LVILLKPTVV 537


>gi|167560915|ref|ZP_02353831.1| general secretion pathway protein D [Burkholderia oklahomensis
           EO147]
          Length = 743

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/289 (18%), Positives = 100/289 (34%), Gaps = 30/289 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  + E+       +G Q  +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGV--------------------LDRFSFETV 259
             ++     +      G   S     +                                +
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSITSLTAGATNPLNVVGALTPGLNIGWLRNMFGIQGLGGL 483

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHD 311
           L      +    L+ P L  +  + A    G      T         +++    +    D
Sbjct: 484 LQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRD 543

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVL 370
            G+ LH  P +   G + L++ TE S  V G   +   P++  R   +TV   +G  IVL
Sbjct: 544 VGLTLHVKPQITDGGILKLQLYTEDSSVVNGTLTSQTGPTFNKRSIQSTVLADNGEIIVL 603

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GL++D+ Q     +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 604 GGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRTKTNLMVFLRPVII 652


>gi|163781745|ref|ZP_02176745.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882965|gb|EDP76469.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
          Length = 663

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/278 (20%), Positives = 106/278 (38%), Gaps = 25/278 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            +++ L++    QV +  TI E     L  IG +  I G   G S    +          
Sbjct: 364 SLISGLDVR-RKQVLIAATIVEASTKSLLDIGVRWQILGKRGGASFRGTSLSNIYSSFAS 422

Query: 243 GDFSVKGVLD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G+F +    D                   +   LE  +    ++ P +  +  Q A    
Sbjct: 423 GNFLMGVFSDVGRTVTVGDATFFFPDLVLLFSLLETGSGFNIISNPRVLTLDNQPAIIKV 482

Query: 290 GGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340
           G    Y        +     +    + G+ L+ TP +          + L    +     
Sbjct: 483 GQVVPYAEGVKFDINGQPIITYDYKEVGLELNVTPRISGDNLRLTIGLNLEEIIDFVTNE 542

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           IG  +  +P    R+ ++ V + +G T++L GL+     +  EG+P L +IPILG LFR 
Sbjct: 543 IGATSYTVPVTSNREVNSDVVIENGQTVILGGLVSTKTLKTMEGVPGLWRIPILGRLFRR 602

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
               +++T +FI  TP++V   +  +L++  + +    
Sbjct: 603 DVKQKDKTTLFIFITPYVV--SSPEELTKITEEHRKLS 638


>gi|104783254|ref|YP_609752.1| type II secretion system protein D [Pseudomonas entomophila L48]
 gi|95112241|emb|CAK16968.1| putative type II secretion system protein D [Pseudomonas
           entomophila L48]
          Length = 651

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 57/266 (21%), Positives = 98/266 (36%), Gaps = 26/266 (9%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ + ++  L+I    QV ++  IAEV     +++G Q        G         G   
Sbjct: 339 AAYRSIVEQLDIR-RAQVVVEAIIAEVSDSSAQELGVQWLFADEKFGAGIVNFGSNGVNI 397

Query: 239 VSEGGDFSVKGVLDRFSF--------------------ETVLHALERATAIRTLAEPTLT 278
            S  G  S                                +++AL+  +    L+ PTL 
Sbjct: 398 ASIAGAASSGDNAKLGKLLSATTGATAGFGHFGGGFNFAMLVNALKGNSGFNLLSTPTLL 457

Query: 279 AISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            +    AS   G +  + T S +        ++   + GV L   P V     + L I  
Sbjct: 458 TLDNAEASILVGQEVPFVTGSVTQNNANPYQTIERKEVGVKLRIKPQVNVDNSVRLDIVQ 517

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           EVS       A D+     R+  T V +   G ++L GL+ D+     + +PLL  IP L
Sbjct: 518 EVSSIAESRAASDV-ITNKREIKTKVMVEDNGLVILGGLISDERSTSNQRVPLLGDIPGL 576

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G LFR+      +  + +   P +++
Sbjct: 577 GRLFRSDASKGTKQNLMVFIRPRILR 602


>gi|302383551|ref|YP_003819374.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302194179|gb|ADL01751.1| general secretion pathway protein D [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 688

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 64/291 (21%), Positives = 104/291 (35%), Gaps = 31/291 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG-- 249
              QV ++V I E+  ++ +QIG Q  + G+           F       G   S  G  
Sbjct: 393 RRAQVKIEVAIVEITGELGEQIGVQLGLGGAVPDDGVIGGTSFSNGGSDLGTVLSALGYP 452

Query: 250 ------------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-- 295
                             F  +L AL   +A   L+ P++T +  Q A    G    +  
Sbjct: 453 AGRLLGQGLSLAAGSEGEFGLLLQALGTNSAANLLSSPSVTVLDNQPAEIVVGQNVPFRT 512

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPS 350
                  +S+   T+++  D G+ L   P V     + L +  EVS  V   +       
Sbjct: 513 GSFATDGNSTNPFTTISREDVGLTLRVIPRVHEGDVVKLDVSQEVSSLVTTNITGAADLI 572

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R   T+V    G TIVL GL+ DD       +P LS +P++G  FR+ R ++    +
Sbjct: 573 TNRRSIQTSVLANDGETIVLGGLVTDDRMSNNSRVPGLSSLPVVGNAFRSRRDSQTRRTL 632

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           FI   P +++           D        ++F   R N+           
Sbjct: 633 FIFLKPTILR----------TDDDVAASARESFDRLRANEPVRIDPTRPPP 673


>gi|226226499|ref|YP_002760605.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
 gi|226089690|dbj|BAH38135.1| putative general secretion pathway protein D precursor
           [Gemmatimonas aurantiaca T-27]
          Length = 621

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 67/299 (22%), Positives = 113/299 (37%), Gaps = 22/299 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL--------------LNIAGE 193
            G    +  +  A + +   L           ++  V+                L+I   
Sbjct: 295 SGAATPVTGATVARDSAAGLLVGRTTVVANTPTNSLVIRTAPPNFPMLRETIEALDIR-P 353

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV  +VTIAE+      + G   +      G  ++   +                 LD 
Sbjct: 354 AQVLFEVTIAEIALGRGFEFGIDWAAVNRG-GDVQAQFGNPEIPDTGSTSALLRVVRLDG 412

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATSVTT 309
                +L  +   + ++ LA P + A + + AS   G +  + +     +  +   +V  
Sbjct: 413 TGVRALLRTIASKSEVQVLATPEIMAANNREASILVGSKVPFISSTRLGNDISIDRAVQY 472

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGT 367
            D G  L   PT+   G I +++  EVS         A   P    R+A T   L  G T
Sbjct: 473 QDVGTKLAIIPTINDEGYISVQLLQEVSSLTPQTVAAALSAPVISTREASTRAVLRDGQT 532

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            V+AGL+ +      +G+P+L  IP LGALF+     R+ TE+ I  TP++V+  A  D
Sbjct: 533 AVIAGLIGETRTTQDQGLPILKDIPWLGALFKRQSSTRQRTELAIFVTPYVVRSDADAD 591


>gi|85711535|ref|ZP_01042593.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
 gi|85694687|gb|EAQ32627.1| Type II secretory pathway, component PulJ [Idiomarina baltica
           OS145]
          Length = 404

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/285 (21%), Positives = 117/285 (41%), Gaps = 11/285 (3%)

Query: 144 TVVLHGMVRTIQDSQRAVEL-SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
             +L    + +   Q AV + + T         +  S  K+++  L+I  + QV ++  +
Sbjct: 118 AALLSQSEQRLLSDQGAVSIDARTNTLILKETPHNVSGIKQLITQLDIPVK-QVMIEARM 176

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSK------SFAADFGGKFVSEGGDFSVKGVLDRFSF 256
             ++ + ++Q G +       +              +      +     +V  + +    
Sbjct: 177 VTMKSNAIEQFGVRWGDLTPRNDDQVIADVIDGMRVELPAVPAAGRLKANVGKLSEGLLL 236

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
           +  L A+E+      +A P +   + Q A    G +  Y   ++S GAT+V      + L
Sbjct: 237 DLELSAMEQDNEAEIIARPKIFTSNQQPAYIEQGTEFPYVESAAS-GATAVKFKKAVMGL 295

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVELPSGGTIVLAGLL 374
             TP + S   + L +    +     V+    P+     ++  T V + SG TIVL G+ 
Sbjct: 296 RVTPQITSNDYVMLDLTITQNTRGDTVSTPTGPAVAIDTQEMATRVLVKSGETIVLGGIF 355

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +    +   G+P+LS +P +G LF+N R   E+ E+ I  TP L+
Sbjct: 356 QQYELKDDTGVPILSSLPFVGNLFKNQREQSEKRELVIFVTPTLL 400


>gi|289667997|ref|ZP_06489072.1| fimbrial assembly protein [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 631

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 44/267 (16%), Positives = 97/267 (36%), Gaps = 33/267 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------------SS 224
              DQV ++  I        + +G +  I G                           + 
Sbjct: 363 RPVDQVLIESRIVIATDTFARDLGARFGIAGRQQYGGNTGVISGSTTNNVSILNSGIHNV 422

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
               +F    G    +  G  +   +   F+ +  L A++       ++ P +   + + 
Sbjct: 423 PGGLNFNLPAGTFTTNTAGAIAYTLLGRNFALDMELSAMQEEGRGEVVSNPRIVTSNQRE 482

Query: 285 ASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
                G +     +    +      +V   +  + L  TPT+ +  R+ L +  +  E  
Sbjct: 483 GVIKQGREIGYVTISGGGAGGQSQANVQFKEVLLELKVTPTITNDNRVFLNMNVKKDEVA 542

Query: 341 IGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
             ++    G +P    R+ +T V +  G T+V+ G+ +   ++    +P L  IP LG L
Sbjct: 543 RFIDLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESIAKVPFLGDIPFLGNL 602

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAM 424
           F+    ++E+ E+ +  TP +++  + 
Sbjct: 603 FKKRGRSKEKAELLVFVTPKVLRVASA 629


>gi|3978519|gb|AAD04923.1| PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            T +      +     ++ ++  L+     QV ++  I E      + +G Q      + 
Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667

Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253
             + +                                     G+ V     F+       
Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L A E   +++T++ P +T +   +A              +S    + T  +  
Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--NQGVSIPFSQTSAQGVNTTFVEAR 785

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
           + L  TP +   G + + I    ++P          PS + ++A+T V +  G T V+ G
Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +           +P LS+IP+LG LF+N+       E+ I  TP ++
Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|291286428|ref|YP_003503244.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883588|gb|ADD67288.1| general secretion pathway protein D [Denitrovibrio acetiphilus DSM
           12809]
          Length = 616

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 52/258 (20%), Positives = 100/258 (38%), Gaps = 28/258 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------A 232
              +QV ++  I E   +     G +  +   +   + +                     
Sbjct: 327 RPREQVYVEALIIETSIENGSDFGVEWQVGAGNDSQAGTIGYLGSDGALTSFQSSVLDGD 386

Query: 233 DFGGKFVSEGGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 +S G +  + G       +   +   + + ++ A+ I  L+ P +  +  + A 
Sbjct: 387 SPNFGALSSGFNLGILGDIVTYEGVSFPTLGILANFVKTASGINILSNPQILTLDNEEAE 446

Query: 287 FTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
              G    +    K  S++    S    D GV L+  P + S   I L+I+ EV +    
Sbjct: 447 IFVGENRPFLTSTKYDSNNNPVQSYDYRDVGVKLNIVPQISSNDTITLKIEQEVKKVSGA 506

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P    R   T V+L  G  +V++GLLKDD +     +P LS IP++G LF+N  
Sbjct: 507 TADVVAPVTLTRSTKTKVKLKDGAIMVISGLLKDDSETYNSSVPWLSSIPVIGWLFKNKN 566

Query: 403 FNREETEIFIAATPFLVK 420
            + E+T + +  +  +++
Sbjct: 567 SSSEKTNMMVFISTSIIR 584


>gi|254251012|ref|ZP_04944330.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124893621|gb|EAY67501.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 780

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 97/274 (35%), Gaps = 39/274 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK-----F 238
           V++ L+     QV ++  I E+       +G Q  +         +     G        
Sbjct: 399 VIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPTSGLGNSIINL 457

Query: 239 VSEGGDFSVKGVLDRF------------------------SFETVLHALERATAIRTLAE 274
            + G   S  GV                                +L      +    L+ 
Sbjct: 458 TAGGTTTSAGGVTGGGLAANLGTLTQGLNVGWLHNMFGVQGLGALLQYFSGVSDANVLST 517

Query: 275 PTLTAISGQSASFTSGGQ--------HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           P L  +  + A    G              + ++S    +    D G+ LH  P +   G
Sbjct: 518 PNLITLDNEEAKIVVGQNVLIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGG 577

Query: 327 RIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + L++ TE S  V    ++   P++  R   +T+   +G  IVL GL++D+ Q     +
Sbjct: 578 ILKLQLYTEDSAVVPSTTSSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKV 637

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 638 PLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 671


>gi|319791917|ref|YP_004153557.1| type IV pilus secretin pilq [Variovorax paradoxus EPS]
 gi|315594380|gb|ADU35446.1| type IV pilus secretin PilQ [Variovorax paradoxus EPS]
          Length = 713

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/280 (20%), Positives = 104/280 (37%), Gaps = 41/280 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI----------------------- 219
           +++  L+I    QV ++  I E      K +G +                          
Sbjct: 437 ELIQKLDIPVR-QVLIEARIVEASDTFGKSLGVRLGGGISRERVASANGNPAYGTLGVMP 495

Query: 220 ------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALER 265
                          ++    +  A   G   +  G F++       S      + ALE 
Sbjct: 496 ATTNGGGVGGAAATWTNSNFINLPAGDAGGTGNTPGAFAISLFNSSLSRMLNLEISALEA 555

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +       A    G +  Y+  +SS GATS++     + L  TP +   
Sbjct: 556 DGKGKLVSSPRVITADQTKALIEQGEEIPYQQATSS-GATSISFRKAVLKLEVTPQITPE 614

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G I L    +VS+   GVN    P+   +   T V + +GGT+V+ G+ +      +  +
Sbjct: 615 GNIIL--TLDVSKDARGVNTSAGPAINTKHVQTEVLVENGGTVVIGGIFELTETNDESRV 672

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           P+L +IP +GALFR       +TE+ +  TP ++      
Sbjct: 673 PVLGEIPYMGALFRKRERVANKTEMLVFITPKMITDRNAA 712


>gi|295678175|ref|YP_003606699.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
 gi|295438018|gb|ADG17188.1| general secretion pathway protein D [Burkholderia sp. CCGE1002]
          Length = 811

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 102/288 (35%), Gaps = 41/288 (14%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              +    + + V++ L+     QV ++  I E+  +    +G Q  +  +S     +  
Sbjct: 389 TAPEATYRNLRAVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVANNSLFAGTNLQ 447

Query: 232 ADFGGKFVS----------------------------EGGDFSVKGVLDRFSFETVLHAL 263
                  ++                                  +  +        +L AL
Sbjct: 448 TGSSNSIINLTAAAAAAGATGATGGAALVSGLSGLQQGLNVGWIHNIFGVQGLGALLQAL 507

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVV 315
            +      L+ P L  +  + A    G     +T S S   +  T          D G+ 
Sbjct: 508 SQTADANVLSTPNLITLDNEEAKIIVGTNVPIQTGSYSNLTSGTTSAAFNTFDRVDVGLT 567

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLA 371
           LH  P +   G + L + TE S  V G N        P +  R   +TV   +G  IVL 
Sbjct: 568 LHVKPQITDGGILKLLLYTEDSAIVNGTNNAATNPAGPEFTKRSIQSTVLCDNGEIIVLG 627

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GL++D+ Q     +PLL  IP LG LFR+ +  R +T + +   P ++
Sbjct: 628 GLMQDNYQVSNSKVPLLGDIPWLGQLFRSEQKTRNKTNLMVFLRPVIL 675


>gi|254498863|ref|ZP_05111570.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
 gi|254351917|gb|EET10745.1| putative MSHA biogenesis protein MshL (pilus type IV) [Legionella
           drancourtii LLAP12]
          Length = 578

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 58/262 (22%), Positives = 112/262 (42%), Gaps = 25/262 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ ++++  + + QV L+  I EV  +   Q+G    + G+S     +F      +    
Sbjct: 265 ERYLDMVQNSMDRQVILEAKILEVNLNNQFQMGINWKLFGASLNALSNFPEVDIAQADFP 324

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
              F V    +   F +V+ ALE    ++ L+ P ++A++ QSA+   G    + T  S 
Sbjct: 325 -SAFDVDVHWNPKDFTSVIQALETQGNVQVLSSPRVSAMNNQSAAIKVGFDEFFVTNVSQ 383

Query: 302 TGA-------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---------EP 339
                            ++T    G+ L  TP + + G++ L +   VS         + 
Sbjct: 384 NQNIVTSSLVTQPILNVNLTPFFSGITLDVTPQIDANGQVTLHVHPTVSLVKDQRKVIDL 443

Query: 340 VIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                  ++P     +R++DT V   +G  +V+ GL++D   +    +P    IP LG L
Sbjct: 444 GTQGGILNLPLANSTIRESDTIVHAKTGQVVVIGGLMQDTTSEGIGQVPWFGNIPFLGTL 503

Query: 398 FRNSRFNREETEIFIAATPFLV 419
            R ++   +++E+ I   P LV
Sbjct: 504 VRATKQTSQKSELVILLRPTLV 525


>gi|121603587|ref|YP_980916.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
 gi|120592556|gb|ABM35995.1| type IV pilus secretin PilQ [Polaromonas naphthalenivorans CJ2]
          Length = 712

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 121/344 (35%), Gaps = 35/344 (10%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
            D +++     +   +    +     +   S I V++ +      G       S R   +
Sbjct: 369 KDKQELEARVAIQNLEAVRTQSFQINYAKASEIAVQISAGG---TGATTARILSNRGSVI 425

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           +E   +         S  ++V N +        QV ++  I E      + +G +     
Sbjct: 426 AEP-RTNQLFVTDIPSRLEQVQNFIAKLDIAVRQVLIEARIVEASDTFGRSLGVRLGGGT 484

Query: 222 SSS-------GPSKSFAADFGGKFVSEGGDF-------------------SVKGVLDRFS 255
             +         + S   ++G       G+F                   S+        
Sbjct: 485 IGAAGALTRGNTNVSLGTNYGATVADTSGNFVSFPASTLGVANAASSFAVSIFNASANRF 544

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               L ALE     + ++ P +       A    G +  Y+  ++S+GATS+      + 
Sbjct: 545 LNLELSALEADGKGKIVSSPRVVTADQTKALIEQGTEFPYQ-TATSSGATSLAFRKANLK 603

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G I L +  +V++   G       +   +   T V + +GGT+V+ G+  
Sbjct: 604 LEVTPQITPEGNIILDL--DVNKDSRGETTAAGIAIDTKHIQTQVLVENGGTVVIGGIFT 661

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +    +  +PLL  +P LG LF++      + E+ +  TP ++
Sbjct: 662 LEETNNEVKVPLLGDVPYLGNLFKSRERTSRKQEMLVFITPKMI 705


>gi|116751076|ref|YP_847763.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
 gi|116700140|gb|ABK19328.1| general secretion pathway protein D [Syntrophobacter fumaroxidans
           MPOB]
          Length = 793

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 59/248 (23%), Positives = 103/248 (41%), Gaps = 21/248 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS----------EG 242
              V ++V IAEV      + G +   + +  G      +  G   VS            
Sbjct: 520 PRAVLIEVIIAEVALTKDFEYGLKWYFSHAEVGAGVGQGSLNGLGGVSDIALNLAGISSA 579

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  ++  V +      VL  L   T ++ L+ PTL A   + A+   GG+    + S + 
Sbjct: 580 GGMALAWVSNAKDMAGVLSWLSSKTKVKILSTPTLLATDNKEAAIQVGGRTPVPSGSYTG 639

Query: 303 G--------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG---DMPSY 351
           G         +++   + G +L  TP + + G + L ++  +         G     P++
Sbjct: 640 GTSTTLDTVFSTIEYEETGTILTVTPHINAGGLVRLEVEQTIRRVGANATVGVNNTAPTF 699

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   TT+    G T+V+ G++ +  +    G P+L  +PI+G LF     +RE TE+ 
Sbjct: 700 TERNLKTTLLAQDGSTVVIGGIIDEIDRDTTTGAPMLVDVPIIGPLFGQKGKSRERTELL 759

Query: 412 IAATPFLV 419
           IA TP +V
Sbjct: 760 IAITPRVV 767


>gi|261414659|ref|YP_003248342.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371115|gb|ACX73860.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|302326330|gb|ADL25531.1| bacterial type II and III secretion system protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 487

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 50/245 (20%), Positives = 96/245 (39%), Gaps = 22/245 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-----------------KSFAADFGGK 237
           Q+ +   +  V  ++ +++G   +    SS  +                       F   
Sbjct: 192 QIMITAKLVVVNSELARELGVDWTAALGSSTLTPGTAAAATGATAGSSRISGVIQSFPNG 251

Query: 238 FVSEGG--DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                G  + ++   L   + +  +  L    +   LA P ++ +    A     G  + 
Sbjct: 252 TSPAVGKANTAITASLLDNNLQIAISNLMGDASTEVLASPQVSTLDNTEAQVFM-GDKVS 310

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
             V   +G +S    + G+ L  TP V    RI L +  E      G +         ++
Sbjct: 311 IRVIDDSGESSTKMVETGIKLTVTPHVSGDNRILLDLHPE--NNSYGYDEKGEVVISTQE 368

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T V +  G T+V+ GL +++  + + GIP L  IP+LG LF+ SR +  + ++ I  T
Sbjct: 369 AKTKVVVADGETVVIGGLTRNENTESESGIPFLKDIPLLGNLFKYSRKSITKKDLVIFVT 428

Query: 416 PFLVK 420
           P +++
Sbjct: 429 PRIIR 433


>gi|302036706|ref|YP_003797028.1| putative type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
 gi|300604770|emb|CBK41102.1| putative Type IV pili biogenesis protein PilQ [Candidatus
           Nitrospira defluvii]
          Length = 664

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 56/342 (16%)

Query: 109 MLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +  +  +   +   ++ +LR+ +     + V   S+ +++      ++  ++ ++  +  
Sbjct: 350 VTRVFYIRNLNATEVQTSLRQNLSPRGTMTVSAASNALIISDTESKLEVLRQLLDGVDLE 409

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           +                          QV ++  I +      + +G Q  I   +   S
Sbjct: 410 VP-------------------------QVQIEARIVQADTTYTRSLGVQWGIQNVNQLGS 444

Query: 228 KSFAADF---------------------GGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            S  + F                          S  G     G  D    +  L A E  
Sbjct: 445 SSGTSAFKTGTTGAFGAQVSDFLINLPANPGLPSVPGAGFSIGKTDGAMLDVRLSAGELL 504

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
              + +A P +T +  + A    G    ++T S     T  T  D  + L+ TP + S  
Sbjct: 505 GLTKVIAAPKITTLDKRDAKIAQGESIPFQTTSLQG--TQTTFVDANLELNVTPQITSRD 562

Query: 327 ------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
                 +I ++++   +      N    PS   R+A T V +  G T+V+ G+  D    
Sbjct: 563 PKEIGKQILMKVRATRNAVGARSNPAG-PSIDRREATTQVLVRDGETMVIGGVFVDTQSN 621

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
              GIP LS+IP+LG LF+N   N  + E+ I  TP +V+  
Sbjct: 622 NVAGIPYLSRIPVLGWLFKNKTENVSKQELLIFLTPTIVRST 663


>gi|167582884|ref|ZP_02375758.1| general secretion pathway protein D [Burkholderia thailandensis
           TXDOH]
          Length = 744

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 102/297 (34%), Gaps = 31/297 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  + E+       +G Q  +
Sbjct: 365 IQADAATNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423

Query: 220 TGSSSGPSKSFAADFGGKFVS------------------EGGDFSVK---GVLDRFSFET 258
             ++     +      G   S                       ++     +        
Sbjct: 424 ANNALYAGTNLPTGGVGGGNSIVDLTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGG 483

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
           +L      +    L+ P L  +  + A    G      T         +++    +    
Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
           D G+ LH  P +   G + L++ TE S  V    N    P++  R   +TV   +G  IV
Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIV 603

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++       
Sbjct: 604 LGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660


>gi|56476683|ref|YP_158272.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
 gi|56312726|emb|CAI07371.1| fimbrial type-IV assembly protein PilQ [Aromatoleum aromaticum
           EbN1]
          Length = 721

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 54/267 (20%), Positives = 96/267 (35%), Gaps = 41/267 (15%)

Query: 193 EDQVTLKVTIAEVRRDILKQ----------------------------IGFQHSITGSSS 224
             QV ++  I E  +D  +                             +G     TG ++
Sbjct: 449 PRQVMIEARIVEANKDFARDLGVRLGVGGVGGRTVGFDANGRPIRRATVGGGLENTGFNA 508

Query: 225 GPS------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           G +                 +      S      +            L ALE     R +
Sbjct: 509 GQTVAATDAQVATVPGGLNVNLPAPGGSGVLSAVLWNNTATRFLNLELSALESDGRGRIV 568

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P +   +   A    G +  Y    +S+GA S+      + L   P +   GR+ L +
Sbjct: 569 SSPRVLTANQVEAVIEQGTKIPYP-EKTSSGAASIKFEKAVLSLKVKPQITPEGRVQLFV 627

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                 P    +    P+   +   T V + +GGT+V+ G+ +++       IPLL ++P
Sbjct: 628 LVNKDRPDFARSVEGTPTVVTKNIQTEVLVENGGTVVIGGIYEEEETDSVTRIPLLGEVP 687

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           ++GALFRN+  N + +E+ I  TP +V
Sbjct: 688 LVGALFRNTIKNSKRSELLIFITPRIV 714


>gi|226943724|ref|YP_002798797.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
 gi|226718651|gb|ACO77822.1| general secretion pathway protein D [Azotobacter vinelandii DJ]
          Length = 752

 Score =  162 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 98/239 (41%), Gaps = 11/239 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V + V +AEV  +  + +G        S G  +       G         ++  +     
Sbjct: 472 VIIDVLLAEVNLNDREGLGVDWQNITGSLGSKQLIFGTANGI---GSSGLNISALNSAGQ 528

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------VT 308
            +  L+A          + P L   SG+ A+   G +    T ++ +  T        V 
Sbjct: 529 TKATLNAFYDNNQAVIRSSPKLMVRSGEEATIEVGNEIPVVTGTTQSTDTDNAPITQTVQ 588

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
               GV+L+  PTV + G + L+I  E+SE    G      P    R+ +T + L  GG+
Sbjct: 589 YRKTGVLLNIKPTVQASGVVDLKISQELSESTDTGTGDTLTPIINNRRVETALTLRDGGS 648

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++LAGL+     +   G+PLL  +P +G LF++   +   TE+ +   P++V+      
Sbjct: 649 VMLAGLISSSKGKGDNGVPLLGDLPWIGNLFKSQSNSETRTELIVMIIPYVVRDFDEAQ 707


>gi|283781400|ref|YP_003372155.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
 gi|283439853|gb|ADB18295.1| type II and III secretion system protein [Pirellula staleyi DSM
           6068]
          Length = 854

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 4/248 (1%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I  VR      +G         +       +        +  +  +K    
Sbjct: 339 PRQVLIEAMILSVRLSDNMTMGVNFEALRDKNNVRLVSGSPLTDLANIDLSEGGLKLGFL 398

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVTTH 310
             S    + ALE       +A P L  ++ Q A    G Q  ++  TV+ ++   SV   
Sbjct: 399 DASLAVFIDALETVGDTNVIASPRLMCLNKQRAEIQIGEQLGYVSTTVTENSATQSVNFL 458

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
           D G +L   P + + G I L +  E+S   + +     +P+  V +  T V    G T++
Sbjct: 459 DVGTLLRLRPNIANDGLIRLEVHPELSTGTVSIEQGLTIPNKTVTQVTTNVMCADGCTVI 518

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS 428
           L GL++ D+      IP L  +P++G  FR     +E TEI +  TP +V +P+   +  
Sbjct: 519 LGGLIRQDLTNNTSQIPFLGSLPLVGPAFRQKTETQERTEIIVLLTPRIVSEPMLGEEGR 578

Query: 429 RPDDHYSV 436
           +  + ++ 
Sbjct: 579 KYGNSFTE 586


>gi|160901009|ref|YP_001566591.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
 gi|160366593|gb|ABX38206.1| type IV pilus secretin PilQ [Delftia acidovorans SPH-1]
          Length = 716

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 116/324 (35%), Gaps = 43/324 (13%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS-GRNQYANSSSKKVMNLLNIAGED 194
           +++   +    +   V +   S+R   +SE   +Q    +  A   + K + L       
Sbjct: 390 LQITANNSGGGVGNSVSSRFLSERGSAISEPRTNQLFVTDTPAKLEAVKALLLTLDVPVR 449

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS-------------------------------ITGSS 223
           QV ++  I E R    + +G +                                 +  S 
Sbjct: 450 QVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYGIGGDNRLVFGTGYENAVASSG 509

Query: 224 SGPSKSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           SG + + + +F         G   +     S+            L A+E     + ++ P
Sbjct: 510 SGGTVNTSGNFVNLPAAKLTGVSGTGSFALSIFNSAANRFLALELSAMEADGQGKIISSP 569

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            L       A    G ++ Y   +   GAT++      + L  TP +   G I L    +
Sbjct: 570 RLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLEVTPQITPEGDIILD--LD 626

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V++   G       +   +   T V + +GGT+V+ G+ + +    +  IP L  +P+LG
Sbjct: 627 VNKDSRGETTTQGVAIDTKHIKTQVLVQNGGTVVIGGIFEMEETNQESKIPFLGDVPVLG 686

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LF++     ++ E+ +  TP ++
Sbjct: 687 HLFKSRVRESQKREMLVFITPKMI 710


>gi|312143767|ref|YP_003995213.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904418|gb|ADQ14859.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 629

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 64/320 (20%), Positives = 122/320 (38%), Gaps = 36/320 (11%)

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
                +       +   D   ++  +  F  D  + V   +  +V++G            
Sbjct: 244 YDKSLEPGTRHVRVDYVDTEQIKEVIENFYPDIRLHVNNKTKRIVING------------ 291

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                        +    S ++++  LN+    QV ++  + EV    L+++G +  ++ 
Sbjct: 292 ------------PENRLDSVEQLVKQLNVP-RQQVVIETRVEEVSEGRLRELGIEGDLSQ 338

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                              +    S+        +     AL+  +  +TLA P L  ++
Sbjct: 339 LRIIKDDHITDRRADSREPQPDKLSLT-------WPEFFRALDETSDSKTLANPRLMTLN 391

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           G++A+     +  Y+ V  +   +        + GV + FTP +     I L I+  VS 
Sbjct: 392 GETANMAILDEVPYRVVEINDDGSRTETFEYAEAGVDIEFTPWITENKEIELSIKPRVSS 451

Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +   AG  P+ R R+ +T + L  G T+ + GL++ D   +   IPLL  IPI+G L
Sbjct: 452 FTQVTTAAGAPPALRSREVETMLRLNDGETLAIGGLIQTDQDGVITKIPLLGDIPIIGEL 511

Query: 398 FRNSRFNREETEIFIAATPF 417
           F++ R      E+ I  TP 
Sbjct: 512 FKSRRNEGSHNELIIFVTPR 531


>gi|149189158|ref|ZP_01867445.1| fimbrial assembly protein [Vibrio shilonii AK1]
 gi|148836912|gb|EDL53862.1| fimbrial assembly protein [Vibrio shilonii AK1]
          Length = 550

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 116/313 (37%), Gaps = 30/313 (9%)

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA 191
           NI     +D   + G    +        ++    T               K+++  L+I 
Sbjct: 238 NINYAKAADVAAMIGGDSDVSMLSERGSVAIDERTNALLVRELPENLRVIKEIIASLDIP 297

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------- 244
            + QV ++  +  ++   ++++G +   T  +   +     +        GG        
Sbjct: 298 VK-QVQIEARVVTIKEGNIEELGIRWGYTSINGDTTIGSTIEGNLASSGIGGGEVDIDDF 356

Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                           F V  +      +  L AL+  +    ++ P L   + +SA   
Sbjct: 357 LNVNLGALSDNAASIAFQVASLGSNTLLDLELSALQSESKAEIISSPRLITTNKKSAYIE 416

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAG 346
            G +  Y   +SS GAT+V      + L  TP +    R+ L +         V+    G
Sbjct: 417 QGTEIPYLKSTSS-GATAVEFKKAVLSLTVTPQITPDNRLILDLDVTQDRVGEVLKTLEG 475

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
           +  +   ++  T V +  G T+VL G+ +  +    + +P+L  IP LGALFR +  N  
Sbjct: 476 ETVAIDTQRIGTQVLVNDGETVVLGGIFQHAMTSKVDKVPVLGDIPGLGALFRRTYENIG 535

Query: 407 ETEIFIAATPFLV 419
           + E+ I  TP ++
Sbjct: 536 KNELLIFVTPKII 548


>gi|242277876|ref|YP_002990005.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
 gi|242120770|gb|ACS78466.1| type II and III secretion system protein [Desulfovibrio salexigens
           DSM 2638]
          Length = 534

 Score =  162 bits (409), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/430 (16%), Positives = 157/430 (36%), Gaps = 18/430 (4%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLV 71
            L      +          +    I    +   + +++    +    ++   V +   L 
Sbjct: 87  ALRLLYSVLDMKGYTLVQQSGYYKIVSKSMAVHEGLNVDSITVGGDQMV-TEVIMLKYLK 145

Query: 72  SDPTKADV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +    AD   + SP      GK+           +  ++  L   I+   +         
Sbjct: 146 AADVIADFRQILSPEGSIFSGKSNNYIVFTDTAANVNKIKELISHIDMPGSLPVSKTYSL 205

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
                  V  +   +    + +  Q + + + + ET        +  +     +++ L++
Sbjct: 206 QYIEAKTVAPMLTKLYTEKVGKVTQSTVQILSMDETNSLIVLAPESVHDDITSIISKLDV 265

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
               QV++K  + EV      ++GF+   + ++ G     A DFG  F   G   +    
Sbjct: 266 RT-MQVSIKAYLVEVTLTDETKLGFEWMFSTNADGTDLKGALDFGHIFDPTGIANTAQEA 324

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL------YKTVS 299
               +++  +F+ +++      + R ++ P + A+  Q AS   G +            S
Sbjct: 325 LKFSIINSDNFKMMMNFFASDDSSRVVSAPHIVALDNQKASIAVGTEIPILKLTQTSVTS 384

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                 +     +G+ L+ TPT+     + L+I   +S  +      D      R A TT
Sbjct: 385 QQNVIKTYDHRKFGMQLNITPTIAENRDVTLKIDQTLSSLLADDTDPDKWQSTDRAASTT 444

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +    T+V+ GL+  +    K+G P L  +P+LG LF +   +  ++E+ +  TP+++
Sbjct: 445 VLVKDAQTLVIGGLMTVNSALDKKGAPYLRNMPVLGPLFGSQDDSMTKSELLLFLTPYVI 504

Query: 420 -KPVAMRDLS 428
             P     +S
Sbjct: 505 ATPDEADAMS 514


>gi|88704159|ref|ZP_01101873.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
 gi|88701210|gb|EAQ98315.1| General secretion (type II) pathway protein D precursor
           [Congregibacter litoralis KT71]
          Length = 745

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/284 (19%), Positives = 110/284 (38%), Gaps = 7/284 (2%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
             V+      G +  + D +   +     L      +        +  L  +A   QV +
Sbjct: 426 TSVNMGTTGAGQISPLADVRVVADEENNALMIYADGKQYGIVKDALKQLDVVAT--QVII 483

Query: 199 KVTIAEVRRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + +I EV+     + G + +      +          G    +    FS           
Sbjct: 484 EASIMEVQLIDELRYGLEWTFKNGLGNNYDGLGTLAAGAAGPAAAAGFSYTVTNSLGDIS 543

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYG 313
            VL+AL   + I  ++ P++  +   +A  + G Q          +      ++T  D G
Sbjct: 544 AVLNALSEESLINVISSPSVMVLDNHTAFISVGDQVPVLQGQTITNGGNSVQNITYRDTG 603

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           V L   P+V + G + + I+  V +     +A    ++  R  ++ V + S  ++VL GL
Sbjct: 604 VQLSVRPSVNAGGLVTMDIEQSVIDVGSIDSATGQRAFLDRTINSRVAVRSSESVVLGGL 663

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           ++++      G+P+L +IP+ G+LF  +  +   TE+ +  TP 
Sbjct: 664 IRENSSLGDSGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 707


>gi|188993080|ref|YP_001905090.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167734840|emb|CAP53051.1| Type II secretory pathway component [Xanthomonas campestris pv.
           campestris]
          Length = 759

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 75/299 (25%), Positives = 120/299 (40%), Gaps = 31/299 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET       +  A  S + V+  L++    QV ++  IAEV      Q G     
Sbjct: 445 VSAVAETNTLLVRTSAQAWKSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGRLQYGVNWYF 503

Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
             + + PS +  +       + G               V       +   ++ AL++ T 
Sbjct: 504 ENAVTTPSNADGSGGPNLPSAAGRGIWGDVSGSVTSNGVAWTFLGKNAAAIISALDQVTN 563

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
           +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V
Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
              G + L I  EVS P     A    +               R+  T   + +G TI+L
Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           AGL+ D       GIP LSK+P++GALF     N +  E+ +  TP +V+ P   RDL+
Sbjct: 684 AGLIDDSTTDGSNGIPFLSKLPVVGALFGRKTQNSDRREVIVLITPSIVRNPQDARDLT 742


>gi|319944755|ref|ZP_08019019.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
 gi|319742004|gb|EFV94427.1| fimbrial assembly protein PilQ [Lautropia mirabilis ATCC 51599]
          Length = 747

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/202 (25%), Positives = 86/202 (42%), Gaps = 3/202 (1%)

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           +    SF A             S+ G          L ALE     + ++ P +   S +
Sbjct: 548 NTNFFSFPAGGINGTNPASLAISLFGSSLSRFINLELSALEADQRGKVVSSPRVLTSSQR 607

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A    G +  Y++ +SS GATSV+     + L  TP +   G + L    +VS   +G 
Sbjct: 608 PAVIEQGTELPYQSATSS-GATSVSFRKANLRLEVTPQITPEGNVILD--VDVSRDAVGQ 664

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                 +   R   T V +  GGT+V+ G+ +   +   + +PLL  IP+LG LFR++  
Sbjct: 665 LTNAGYAIDTRHVKTQVLVEDGGTVVIGGIYEQFERNRTDKVPLLGDIPVLGYLFRSTTR 724

Query: 404 NREETEIFIAATPFLVKPVAMR 425
             + TE+ +  TP +V     +
Sbjct: 725 TNDRTELLVFLTPRIVTDTLAQ 746


>gi|238019550|ref|ZP_04599976.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
 gi|237864249|gb|EEP65539.1| hypothetical protein VEIDISOL_01419 [Veillonella dispar ATCC 17748]
          Length = 421

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 65/275 (23%), Positives = 118/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++ T+  + +   LSE                + ++N ++     QV L+ TI  + 
Sbjct: 154 LSNIMGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLINAVD-KEPKQVQLEATIIAME 212

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 213 QSYAKEQGFRWS-----WLSLTGHGEDKTNSYGAVTFGKTPGGEAYKFFVKPELSLMESS 267

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ A++G++A    G +      S   G         + G+ L++TP + +
Sbjct: 268 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 327

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 328 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 386

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LFR+SR  ++  E+ I     +V
Sbjct: 387 IPILGDIPLLGKLFRHSRKTKDSIEMLILVRANVV 421


>gi|153802182|ref|ZP_01956768.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
 gi|124122256|gb|EAY40999.1| general secretion pathway protein D [Vibrio cholerae MZO-3]
          Length = 404

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/320 (17%), Positives = 111/320 (34%), Gaps = 49/320 (15%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAE 204
            G  +     +  V ++    + S              +V+  L+I    QV ++  I E
Sbjct: 24  KGTGQPTTSKRNEVMIAAHADTNSLVLTAPQDIMNAMLEVIGQLDIR-RAQVLIEALIVE 82

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------------------------- 237
           +       +G Q     S S           G                            
Sbjct: 83  MAEGDGINLGVQWGSLESGSVIQYGNTGASIGNVMIGLEEAKDTTQTKAVYDTNNNFLRN 142

Query: 238 ------------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                         +          +    +  +++A+   ++   L+ P++T +    A
Sbjct: 143 ETTTTKGDYTKLASALSSIQGAAVSIAMGDWTALINAVSNDSSSNILSSPSITVMDNGEA 202

Query: 286 SFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           SF  G +    T      ++     +V   + G+ L   P +     + L I+ EVS  +
Sbjct: 203 SFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGNSVQLNIEQEVSNVL 262

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP+LG LFR+
Sbjct: 263 GANGAVDV-RFAKRQLNTSVMVQDGQMLVLGGLIDERALESESKVPLLGDIPLLGQLFRS 321

Query: 401 SRFNREETEIFIAATPFLVK 420
           +    E+  + +   P +++
Sbjct: 322 TSSQVEKKNLMVFIKPTIIR 341


>gi|119476023|ref|ZP_01616375.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
 gi|119450650|gb|EAW31884.1| type II and III secretion system protein [marine gamma
           proteobacterium HTCC2143]
          Length = 617

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/435 (18%), Positives = 149/435 (34%), Gaps = 37/435 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L    PS   +    ++N+ +I      + +   +   ++    +       D+ V + 
Sbjct: 144 VLKPLLPSSGYIAAYPQSNSLIIADEAENVKRLVALVRKIDASGSI-------DIEVINL 196

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIG-HDGKQMLNLDILIERDIAHLEMTLRRFI-A 132
             AD    S   + L     G+   I         +++ D    R +  L   L + I  
Sbjct: 197 LHADAENVSGLVLSLLSDTTGETFSIAPDIRSNSLLMSGDAATTRRVRQLVKQLDQPISD 256

Query: 133 DSNIRV------EMVSDTVVLHGM-------VRTIQDSQRAVELSETFLSQSGRNQYAN- 178
           + N RV      E      +L GM        R   DS      +    +        + 
Sbjct: 257 NGNTRVVYLHYLEAKEVLPILKGMGAAMQENNRNAGDSSDISIEASESSNALVMTAPPSM 316

Query: 179 -SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                +V+  ++I     + ++  I EV +D  + IG + + + S++  +++        
Sbjct: 317 LDVMSRVIEQIDIRRAS-ILVEAIIVEVSKDFSQTIGVEWNTSLSANDGAEALTNFGLRN 375

Query: 238 FVSEGGDFSVKGVLD-----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               G    +   L+       S   +  A+        L+ P +  +  + A    G  
Sbjct: 376 IDESGAVSLLGAGLNLGFYRNGSLRVLAQAIANENDANILSSPRIMTMDNEEAEILVGSN 435

Query: 293 HLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             +        + S+    T++  HD G+ L  TP +     I L I  EV         
Sbjct: 436 VPFITGQSTGSSSSTGDPFTTIERHDIGLTLKITPQINEGDSITLDILQEVETISEATTV 495

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            +      R   T V +     +VL GL+ DD Q+L   +P L  +P+LG LFR +    
Sbjct: 496 ANDIVTNKRSIKTKVIVEDDAILVLGGLVSDDTQELVSKVPFLGDLPLLGGLFRTTTDTV 555

Query: 406 EETEIFIAATPFLVK 420
            +  + +   P +V 
Sbjct: 556 VKKNLMVFIHPVIVD 570


>gi|307826274|ref|ZP_07656482.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
 gi|307732679|gb|EFO03548.1| type IV pilus secretin PilQ [Methylobacter tundripaludum SV96]
          Length = 785

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 101/299 (33%), Gaps = 33/299 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           AV  + T               KK++  L++    QV ++  +        + +G +   
Sbjct: 488 AVVDARTNTLIVRETTKRLDEVKKLIRKLDVPVR-QVMIEARVVIADDSFTENLGVKFGA 546

Query: 220 -TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------------------- 255
              +S G  KSFA    G   +        G +   +                       
Sbjct: 547 AKAASLGSGKSFAVGGSGTKGNGNLQPDANGNIGTLNDTLVDLGVAGLTATPPGALGMTL 606

Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                      L AL+       ++ P +  +   +A    G Q    T  ++    + T
Sbjct: 607 ARGADYVLNLELQALQIEGKGEIVSNPRVMTMDRCTAVMMQGVQIPVTTPGTANTPPTTT 666

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGT 367
             D  + L+ TP +   G + + +           N     P    R+  T+V +  G T
Sbjct: 667 YIDAVLKLNATPQITPSGSVIMNLLITKDNANTTSNPVSGNPGIDKREIKTSVLVEDGET 726

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +VL G+ +      K  IP  + +P +G LF NS  N+ + E+ I  TP ++K     D
Sbjct: 727 VVLGGVYEGAESYGKNKIPFFADLPGIGFLFTNSTTNKTKKELLIFVTPKIMKDNVASD 785


>gi|83720377|ref|YP_440567.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
 gi|167621024|ref|ZP_02389655.1| general secretion pathway protein D [Burkholderia thailandensis
           Bt4]
 gi|83654202|gb|ABC38265.1| general secretion pathway protein D [Burkholderia thailandensis
           E264]
          Length = 744

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 97/273 (35%), Gaps = 31/273 (11%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS--- 240
           V++ L+     QV ++  + E+       +G Q  +  ++     +      G   S   
Sbjct: 389 VIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQVANNALYAGTNLPTGGVGGGNSIVD 447

Query: 241 ---------------EGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                               ++     +        +L      +    L+ P L  +  
Sbjct: 448 LTTRAATSAVGAISTLTPGLNIGWLHNMFGIQGLGGLLQYFSGVSDANVLSTPNLVTLDN 507

Query: 283 QSASFTSGGQHLYKTV--------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           + A    G      T         +++    +    D G+ LH  P +   G + L++ T
Sbjct: 508 EEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYT 567

Query: 335 EVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E S  V    N    P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP 
Sbjct: 568 EDSSVVNTTVNNQSGPTFNKRSIQSTVLADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPW 627

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +G LFR+    R++T + +   P ++       
Sbjct: 628 IGQLFRSEGKTRQKTNLMVFLRPVIITDRETAQ 660


>gi|34499269|ref|NP_903484.1| type II secretion system protein [Chromobacterium violaceum ATCC
           12472]
 gi|34105120|gb|AAQ61476.1| probable type II secretion system protein [Chromobacterium
           violaceum ATCC 12472]
          Length = 708

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 107/322 (33%), Gaps = 38/322 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA---------AD 233
            V++LL+     QV ++  + EV      +IG Q +     +G   +             
Sbjct: 371 NVIDLLDKR-RAQVYVEALVMEVTASRATKIGVQWAANVHGNGLIGNSLPSPSKPLVPGG 429

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVL------------------HALERATAIRTLAEP 275
            G          S+   L        +                   ALE+      +A P
Sbjct: 430 SGASDTPGTALGSLVSSLTGGGLTAAIINTITVGGQQIPTLGLLAQALEQEAQGNLVASP 489

Query: 276 TLTAISGQSASFTSGGQHLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            L  +  + A    G +              +S+   ++      G  L  TP +   G 
Sbjct: 490 QLVTMDNEKAKIVIGQEIGVPTATYPAGTNGTSNAPYSTYDRKTVGFGLEITPQISEGGT 549

Query: 328 IGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           I ++I            +A   P++  R  DT V +  GG + L GL ++     ++ +P
Sbjct: 550 IRMKISQAADSIDQTTLSAAAGPTFNRRTLDTVVTVGDGGLVALGGLTQETTSNAEDKVP 609

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           LL  IP++G LF+     R++T + I   P +++       +   + Y    +  A    
Sbjct: 610 LLGDIPVIGNLFKYQGKERKKTNLMIFIRPTIIRDEIGNR-AVAGERYGYVMEDAARNVG 668

Query: 447 RVNKIYGPKEASEVEGQNYKGA 468
           R   +    +       +  GA
Sbjct: 669 RKLPLGLNDQLKTPAAGSIHGA 690


>gi|167717371|ref|ZP_02400607.1| general secretion pathway protein D [Burkholderia pseudomallei
           DM98]
          Length = 730

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E+       +G Q  +
Sbjct: 365 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 423

Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258
             ++     +      G                      +S G +      +        
Sbjct: 424 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 483

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
           +L      +    L+ P L  +  + A    G      T         +++    +    
Sbjct: 484 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 543

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
           D G+ LH  P +   G + L++ TE S  V    N    P++  R   +TV   +G  IV
Sbjct: 544 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 603

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 604 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 653


>gi|257454588|ref|ZP_05619844.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
 gi|257447898|gb|EEV22885.1| general secretion pathway protein D [Enhydrobacter aerosaccus SK60]
          Length = 813

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/269 (21%), Positives = 108/269 (40%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +N L+    DQV ++  I E+  +  +Q+G Q ++  ++SG       + G   V  
Sbjct: 397 ENAINELDTR-RDQVLIQAAIMEISGNDTQQLGVQWAMGNANSGVGVINFNNIGASAVGL 455

Query: 242 G----------------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                  G        +R  +  +L A+ +      L+ P++  
Sbjct: 456 ASEILSKTPGTAAASVAGALLGIGTSKTDSNGNREFYGAILQAINKTNNANLLSMPSILT 515

Query: 280 ISGQSASFTSGGQHLYKTVS-------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +  + A+   G    + T S       S+T   +V+  D G+ L+  P +   G + L I
Sbjct: 516 LDNEKANILVGQNVPFVTGSYTTASNSSTTPFQTVSRQDVGINLNVIPHIGDNGSVRLEI 575

Query: 333 QTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
             EVS  V G  N             TT+      T+ L GL++D+    ++ +P L   
Sbjct: 576 SQEVSSIVDGTLNNVSGVVTNKNLIKTTILADDQQTVALGGLMRDNSTYGQQKVPGLGDA 635

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVK 420
           PILG LFR+   N ++T + +   P +++
Sbjct: 636 PILGNLFRSKSKNSDKTNLIVFLQPTILR 664


>gi|330815003|ref|YP_004358708.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
 gi|327367396|gb|AEA58752.1| General secretory pathway protein D [Burkholderia gladioli BSR3]
          Length = 787

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 46/331 (13%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG------- 236
           V++ L+     QV ++  I E+       +G Q  +  ++     S  +   G       
Sbjct: 393 VIDQLDER-RAQVYIEALIVELNSSTSANLGIQWQVANNALYAGSSLGSGINGVGNTITN 451

Query: 237 ----------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                                           +K +        +L A   +     L+ 
Sbjct: 452 LTATAATTSLPNGVNSAAAAAATLSPGLNIGWLKNMFGITGLGALLQAFSGSNDANILST 511

Query: 275 PTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           P L  +  + A    G              + S+S    +    D G+ LH  P +   G
Sbjct: 512 PNLVTLDNEEARIVVGQNVPIATGSYANLTSGSNSNAFNTFDRQDVGLTLHVKPQITEGG 571

Query: 327 RIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            + L+I TE S  V    +         +P++  R   +TV   +G  IVL GL++D+ Q
Sbjct: 572 ILKLQIYTEDSSVVPSATSSGSSSSQVGVPTFNKRSIQSTVLCDNGEIIVLGGLMQDNYQ 631

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVED 438
                +PLL  IP +G LFR+    R +T + +   P ++      + ++     Y    
Sbjct: 632 VGNNKVPLLGDIPWIGQLFRSEAKQRSKTNLMVFLRPVILSDEATTQAVTANRYDYIQGV 691

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
                  N + +         +     +G  
Sbjct: 692 QGAYKSDNNLIRDKDDPVTPPMPLGPSQGGA 722


>gi|118592650|ref|ZP_01550040.1| general secretion proteinD [Stappia aggregata IAM 12614]
 gi|118434701|gb|EAV41352.1| general secretion proteinD [Stappia aggregata IAM 12614]
          Length = 789

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 62/282 (21%), Positives = 120/282 (42%), Gaps = 9/282 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L    R+ +++   V                    + V+  L++    QV ++ TI EV 
Sbjct: 452 LADTRRSSEEAVSIVPDVRNNALLVHSKFRQFKRIRDVVRTLDVPL-AQVVIEATIVEVA 510

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            +   + G Q  ++G       S   D                 +D  +   VL AL+  
Sbjct: 511 LNDRLKYGVQAFLSGEGVEIRSSRLPDPADTGEPGAVALFDVDSVDGTTATFVLEALQTV 570

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFT 319
           T ++ ++ P LT + G++A  + G Q  +    ++            +   D GV+L  T
Sbjct: 571 TELKVISSPYLTVLDGKAARLSVGDQIPFLVQQTNASETGTTTTTNQIEVRDVGVILQVT 630

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P++     + L +Q EVS      +  ++ P    R  ++ V + SG   +L GL++   
Sbjct: 631 PSIRPDNSVLLNVQQEVSSAKSSGSGENLTPVISQRTINSDVVIESGKMALLGGLIQSRS 690

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++   +PL+SK+PI+G LF+ +   ++ TE+ +  TP +V+
Sbjct: 691 EEVTTKVPLMSKMPIVGNLFKQTDAVKDRTELLVMITPRVVR 732


>gi|297537339|ref|YP_003673108.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297256686|gb|ADI28531.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 608

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 114/299 (38%), Gaps = 41/299 (13%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF---------AADFG 235
           ++ +  + + QV ++ TI EV  +   + G   S  GS       F         A +  
Sbjct: 306 IDKVMGSAKKQVLIEATIVEVTLNDGYKAGIDWSRLGSLGSAGFVFKQALGPQLGAVNSA 365

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                                 + +  LE+    + L+ P L  ++ Q+A        +Y
Sbjct: 366 ANVTLSSSGIIAGYTNGNRGILSSVQLLEQFGNTKVLSSPKLMVLNNQTAVLKVVDNLVY 425

Query: 296 KTVSSS--------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---- 337
            TV S               +  T+  T   GVV+  TP +   G + + ++  ++    
Sbjct: 426 FTVQSQISQSASGVAGTNLQSVTTTPNTVPVGVVMSVTPQINDTGNVNINVRPTITSLIR 485

Query: 338 -------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                  +     +   +P  R R+ ++ +++ SG   VL GL++D+I+   E +P LSK
Sbjct: 486 YVPDPNPQIQKSPDFQGIPEIRTREMESLLQISSGNIAVLGGLMQDEIKNSTEAVPGLSK 545

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV-------KPVAMRDLSRPDDHYSVEDDAKA 442
           +P +G +F+    + ++TE+ I   P ++         +A      P        +A+A
Sbjct: 546 VPGVGKVFQGKNDSNQKTELVIFLRPTVIPNASLESDELAHYKQYLPTQALERASEAEA 604


>gi|196233728|ref|ZP_03132568.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222242|gb|EDY16772.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 621

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/336 (15%), Positives = 98/336 (29%), Gaps = 59/336 (17%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  + EV  +  +  G     T  SS   ++F+        S+  +        
Sbjct: 259 TQQVMIEARLVEVTANPKQSYGINWGGTVGSSSTPQTFSYGAPTVPGSQSVNLQTNPTTG 318

Query: 253 R------------------------------------------------FSFETVLHALE 264
           +                                                 S    L  L 
Sbjct: 319 QVTPVIVNSQLPQLVTTNGKLTPGDFLMNGETRGGFGDLLASQFAILTVPSMSATLRLLN 378

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-----VTTHDYGVVLHFT 319
             +    LA P +   + Q A+           ++ +              ++G  L  T
Sbjct: 379 EDSDAEFLAHPRVVTANNQKATIKIVRNQPIPQLNFNEQTAQAVFSGFQDKEFGNTLIVT 438

Query: 320 PTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           P++     I + +Q E+S                 P    R  D+ V + SG T+ + GL
Sbjct: 439 PSINKDDFISMSVQPEISNKVADATFTFSGATVTSPVIDKRTLDSNVVIKSGDTLAIGGL 498

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           L+D++ + +  +P++  IPILG  F+     R +  + I  TP ++K      L      
Sbjct: 499 LQDEVTKGRTKVPVIGDIPILGYAFQERLNVRTKRNLLIFVTPTIIKQGYGTGLEDQVTG 558

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
                +  A      N   G    +    +      
Sbjct: 559 LHHSGEEYADPNGWRNNARGAVRLAPTAERQLAADY 594


>gi|329848228|ref|ZP_08263256.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
 gi|328843291|gb|EGF92860.1| general secretion pathway protein D [Asticcacaulis biprosthecum
           C19]
          Length = 617

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 63/334 (18%), Positives = 124/334 (37%), Gaps = 15/334 (4%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
             + +  +  +     +++   +     M+  +  A S        +     G     + 
Sbjct: 257 TTIRVWVYHPQGASAENLVKTLNAVVGTMSDVQVPAGS---ATSTGEAAAPAGTSSAPES 313

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIG 214
           + + V +     + +       ++  ++  +L+       QV ++ +I EV        G
Sbjct: 314 NSQGVRIVADKATNTVIINAPEATRVRLQEVLSEIDREPAQVFIEASIVEVTLTKDLSYG 373

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                  S+   S S  +     F      FS+  + +       + AL   + +R ++ 
Sbjct: 374 VDWEAIASNGDLSVSHFSTRSTGFGQIAPGFSINYLGN--DISAAVTALSSQSKVRIVSA 431

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTTHDYGVVLHFTPTVLSPGR 327
           P +  +    A    G Q    T ++ +          SV   D GV+L  TP +    R
Sbjct: 432 PKVATVENMPAVLQVGDQVPVVTQTAQSVVNGDAPVVNSVDYRDTGVMLKVTPRITGTNR 491

Query: 328 IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           I L +  EVS       +  D P+   RK D+++ +P G  + L GL+     Q   GIP
Sbjct: 492 ILLEVSQEVSSVARTQTSGIDSPTINQRKLDSSLIVPEGTVVALGGLISSSDSQSDSGIP 551

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  IP++G +F+    NR  TE+ +     +++
Sbjct: 552 GLKDIPLIGGVFKGQSHNRNRTELIVLLKARILR 585


>gi|161523243|ref|YP_001578255.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|160340672|gb|ABX13758.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 775

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+      Q+G Q  +
Sbjct: 374 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 432

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
              +     + AA  G    +   + +   V                             
Sbjct: 433 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 492

Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
                     +L      +    L+ P L  +  + A    G      T         ++
Sbjct: 493 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 552

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
           S    +    D G+ LH  P +   G + L++ TE S       N+   PS+  R   +T
Sbjct: 553 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 612

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +G  IVL GL++D        +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 613 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 672


>gi|254184073|ref|ZP_04890664.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
 gi|184214605|gb|EDU11648.1| general secretion pathway protein D [Burkholderia pseudomallei
           1655]
          Length = 751

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 103/290 (35%), Gaps = 31/290 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + +       +     + + V++ L+     QV ++  + E+       +G Q  +
Sbjct: 372 IQADAASNSLIITASDPVYRNLRAVIDQLDAR-RAQVYIEALVVELNSTTNANLGIQWQV 430

Query: 220 TGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVK-GVLDRFSFET 258
             ++     +      G                      +S G +      +        
Sbjct: 431 ANNALYAGTNLTTGGVGGGNSIVDLTTRAATSAVGAISTISPGLNIGWLHNMFGIQGLGG 490

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTH 310
           +L      +    L+ P L  +  + A    G      T         +++    +    
Sbjct: 491 LLQYFSGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGNTNNAFNTYDRR 550

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIV 369
           D G+ LH  P +   G + L++ TE S  V    N    P++  R   +TV   +G  IV
Sbjct: 551 DVGLTLHVKPQITEGGILKLQLYTEDSSVVNTTINNQSGPTFNKRSIQSTVLADNGEIIV 610

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 611 LGGLMQDNYQVANNKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 660


>gi|307293364|ref|ZP_07573210.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
 gi|306881430|gb|EFN12646.1| general secretion pathway protein D [Sphingobium chlorophenolicum
           L-1]
          Length = 716

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 59/293 (20%), Positives = 111/293 (37%), Gaps = 57/293 (19%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              +QV ++  I E+     K++G Q  I  + +G + +  ++     ++  G  + + +
Sbjct: 348 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNAQPNLLTIAGAVAAREL 407

Query: 251 LDRFS---------------------------------------------------FETV 259
            D  +                                                   F  +
Sbjct: 408 GDSTTVEVNNGTTTTTTRSRNSSDLESTLQEAAFNSLTGASGIIGGLGTQIGRNGIFGAI 467

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
           ++A++  T    L+ P++  +  Q AS   G Q    T  +          +V   D G+
Sbjct: 468 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPITTGEALSQNFDNQFRTVQRQDVGI 527

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            L   P + + G I L ++ EVS     V N+        R+ +TTV +  G  + L GL
Sbjct: 528 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNSNTDLIINKREIETTVTVDDGEILALGGL 587

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L D+ ++  E IPLLS IP +G LF++   +R +T + +   P +++      
Sbjct: 588 LDDNERKTIERIPLLSDIPGIGELFKSRSKSRTKTNLMVFIRPTILRSKEDAQ 640


>gi|189348900|ref|YP_001944528.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
 gi|189332922|dbj|BAG41992.1| general secretion pathway protein D [Burkholderia multivorans ATCC
           17616]
          Length = 768

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 102/300 (34%), Gaps = 41/300 (13%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+      Q+G Q  +
Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
              +     + AA  G    +   + +   V                             
Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485

Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
                     +L      +    L+ P L  +  + A    G      T         ++
Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
           S    +    D G+ LH  P +   G + L++ TE S       N+   PS+  R   +T
Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNSQTGPSFTKRSIQST 605

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +G  IVL GL++D        +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665


>gi|108759429|ref|YP_633909.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
 gi|108463309|gb|ABF88494.1| type IV pilus secretin PilQ [Myxococcus xanthus DK 1622]
          Length = 901

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 49/287 (17%), Positives = 97/287 (33%), Gaps = 35/287 (12%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            T +      +     ++ ++  L+     QV ++  I E      + +G Q      + 
Sbjct: 609 RTNVLIVKDVRSNTERARSLVRSLDTQTP-QVLIESRIVEANTSFSRSLGVQWGGQARAG 667

Query: 225 GPSKSFAA-------------------------------DFGGKFVSEGGDFSVKGVLDR 253
             + +                                     G+ V     F+       
Sbjct: 668 QATGNSTGLIFPNNLAVTGGVTGTGAGLPDNPNFAVNLPTGTGQGVGGAMGFTFGSAGGA 727

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
                 L A E   +++T++ P +T +   +A              +S    + T  +  
Sbjct: 728 LQLNLRLSAAENEGSVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSAQGVNTTFVEAR 785

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
           + L  TP +   G + + I    ++P          PS + ++A+T V +  G T V+ G
Sbjct: 786 LSLEVTPHITQDGSVLMSINASNNQPDPSSTGANGQPSIQRKEANTQVLVKDGDTTVIGG 845

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +           +P LS+IP+LG LF+N+       E+ I  TP ++
Sbjct: 846 IYVRRGATQVNSVPFLSRIPVLGLLFKNNSETDTRQELLIFITPRIL 892


>gi|325926645|ref|ZP_08187959.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
 gi|325542997|gb|EGD14446.1| general secretion pathway protein D [Xanthomonas perforans 91-118]
          Length = 763

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 70/306 (22%), Positives = 116/306 (37%), Gaps = 34/306 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV        G     
Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 502

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------------SFETVLHALER 265
             + +  S S    FGG  +      ++ G +                 +   ++ AL++
Sbjct: 503 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGKVTGTEGLAWSFLGKNAAAIITALDK 562

Query: 266 ATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
            T +R L  P++   +   A+             +   + + T  +SV   D GV+L   
Sbjct: 563 VTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGIGTDTSYSSVQYIDTGVILKVR 622

Query: 320 PTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           P V   G + L I  EVS P                A        R+  T   + SG TI
Sbjct: 623 PRVTKDGMVFLDIVQEVSSPGDRPAACTSATATINAAACNVDINTRRVKTEAAVQSGDTI 682

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+ D      +G+P LSK+P++GALF          E+ +  TP +V+    ++  
Sbjct: 683 MLAGLIDDTTSDTSDGVPFLSKLPVVGALFGTKGKTSNRREVIVLITPSIVR--NPQEAR 740

Query: 429 RPDDHY 434
              D Y
Sbjct: 741 NLTDEY 746


>gi|149925604|ref|ZP_01913868.1| type II and III secretion system protein [Limnobacter sp. MED105]
 gi|149825721|gb|EDM84929.1| type II and III secretion system protein [Limnobacter sp. MED105]
          Length = 807

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/276 (19%), Positives = 94/276 (34%), Gaps = 34/276 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L++    QV ++  I EV  D   + G Q                         G
Sbjct: 424 SIIEKLDVR-RAQVFVESLIVEVSTDKAAEFGIQFQGLSGVGADGVRVIGGTNFNDPGSG 482

Query: 243 GDF-----------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
            +                        ++ G+    +   +  ALE       L+ P +  
Sbjct: 483 SNILGAATNLGSVGRGLNIGVIDGQVNIPGIGTISNLGFLARALESKANANILSTPNILT 542

Query: 280 ISGQSASFTSGGQHLYKTVSSST---------GATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           +  + A    G    + T   +             ++   D G+ L   P V   G + L
Sbjct: 543 LDNEEAKIVIGQNVPFITGQFTNSGGNGATVNPFQTIERQDVGLTLRVKPQVSEGGIVKL 602

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            I  EVS  V   N   +     R  ++ V + +G  IVL GL++D +   +E +P L  
Sbjct: 603 GIFQEVSSVVDSTNVSGI-ITNKRSIESNVLVETGNIIVLGGLVEDRVTGNEEKVPGLGD 661

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P+LG  FR     R++T + +   P +V+      
Sbjct: 662 VPVLGQFFRYDNRRRQKTNLMVFLRPVVVRNEDQAQ 697


>gi|91787225|ref|YP_548177.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91696450|gb|ABE43279.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 747

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 128/370 (34%), Gaps = 50/370 (13%)

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
           +  L   D   L  TLR  +A + +         V+ G       S  A   +   L+ S
Sbjct: 313 VVYLKNADATKLATTLRAAMAANTLGAIAAGP--VVTGAPLPGPGSVAAAGAATATLTSS 370

Query: 172 GRNQYANSSSKKVMNLLNIAGED------------------QVTLKVTIAEVRRDILKQI 213
             +      +    N L I   +                  QV ++  IAEV  D   + 
Sbjct: 371 QPSTGGQIQADPSTNSLIITAPEPLYRQLRAVIDKLDARRAQVFVESLIAEVNADKAAEF 430

Query: 214 GFQHSI------------------TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           G Q                      G ++  + +  A  G    S G +  V  + +   
Sbjct: 431 GIQFQGALGKKGDNNIGLLGTNFNIGGTNIITLATQAAAGVIAPSTGANLGVAHLTNGVY 490

Query: 256 FETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305
               L   LE   A   L+ P L  +  + A    G    + T   +   T         
Sbjct: 491 VLGFLARFLEANGAGNILSTPNLLTLDNEEARIVIGQNVPFITGQYTNANTSAGSVNPFQ 550

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           ++   D G+ L   P +   G + ++I  EVS      +N+        R  ++ V +  
Sbjct: 551 TIERKDVGLTLRVKPQISENGTVKMQIFQEVSSVQPSSINSATGLITNKRSIESNVLVDD 610

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G  +VL GLL+D+     E +P L  IPILG LF+    +R++T + +   P +V+  A 
Sbjct: 611 GAIVVLGGLLQDEYSGNVEKVPGLGDIPILGHLFKGETRSRKKTNLMVFLRPVVVRD-AP 669

Query: 425 RDLSRPDDHY 434
              S   D Y
Sbjct: 670 SSESLSMDRY 679


>gi|311697132|gb|ADQ00004.1| type II and III secretion system protein [marine bacterium HP15]
          Length = 373

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 83/331 (25%), Positives = 133/331 (40%), Gaps = 18/331 (5%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
              +  L      + +      D V +                S               +
Sbjct: 19  PGEQHVLAFSAPLTKVSASN-PDVVSVTASAENEVLVTAEGPGSAAVRVWLQGQTSPQMT 77

Query: 181 SKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              V  LL        QV   + I EV R  L  +G  +S   +    + + +    G F
Sbjct: 78  EFNVSRLLGGRRSISSQVQTDIRIVEVNRSELNTLGVYYSKLFNGGSQTIALSPPGAGGF 137

Query: 239 VSEGGDFSVKGVLD--------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
              G      G+            S  ++++ALE      TLAEP+L ++SGQ+A+F SG
Sbjct: 138 RGFGPSAGATGITTEGFNLFSFGSSSLSIINALESGGFAYTLAEPSLVSLSGQTATFLSG 197

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG 346
           G+     VSS  G   +   ++GV L  TPTV+S   I L++  EVSE      +     
Sbjct: 198 GEFPIP-VSSDNGEVEIEFKEFGVSLALTPTVVSDDEIILKVAPEVSELDFTSGVSTGGV 256

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P  R+R+  TTV +  G + +++GL+        + IP L  +P++GA FR+ R   E
Sbjct: 257 AVPGLRIRRTQTTVTMAPGESFIISGLVSRATTNRSDRIPGLGNLPVIGAFFRSDRVASE 316

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           + E+ +  TP  V   A + LSR   ++   
Sbjct: 317 DKELIMVVTPKFV--SAQKQLSREARNFGKA 345


>gi|791156|gb|AAA65694.1| mannose-sensitive hemagglutinin D [Vibrio cholerae]
          Length = 559

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 94/263 (35%), Gaps = 34/263 (12%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
               QV  +  I EV      Q G   S   SS+G +    +                 G
Sbjct: 273 RMHRQVISEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGSITQDSNGNPITSVLPG 332

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN- 344
            T  SS          +   ++T    G+ L  TP +   G + L +   V E       
Sbjct: 393 VTDLSSVVGTGDNAQASPDITLTPFFSGISLDVTPQIDDQGNVLLHVHPAVIEVEQQTKK 452

Query: 345 --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                      +    +R++D+ +    G  +V+ GL+K +       +P L  +P LG 
Sbjct: 453 ILYRSEEIELPLARSSIRESDSVIRAKDGDVVVIGGLMKSNTVDQVSKVPFLGDVPALGH 512

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFRN+    ++TE+ I   P +V
Sbjct: 513 LFRNTTKLTQKTELVILLKPTVV 535


>gi|260654164|ref|ZP_05859654.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
 gi|260631149|gb|EEX49343.1| putative bacterial type II/III secretion system short domain
           protein [Jonquetella anthropi E3_33 E1]
          Length = 531

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 72/403 (17%), Positives = 130/403 (32%), Gaps = 52/403 (12%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISI---GLNKVIILQVPVDVQDVLVSDPTK 76
               A            + +S  E+     + +   GL   II+  P     V +S    
Sbjct: 133 GAPSAGCAKPAGQKEKRLTMSLTEVKVADALRLAAEGLKCSIIVDEPETSPTVTLS---L 189

Query: 77  ADVVVHSPRTMYL----FG-KNVGQA------NVILIGHDGKQMLNLDILIERD--IAHL 123
            DV       +      +G   +G        +V+        + + D+          L
Sbjct: 190 RDVTAQEALELITASAGYGWAKIGSTILVGPRSVLAARLGKNGLKSYDVFWADPGKTGAL 249

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             ++   + D  + V+   + + + G        ++  EL       +            
Sbjct: 250 VKSIVGLVGDDAVSVDERRNRIYVKGT---PAQQEQVRELLAQLDEPA------------ 294

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
                     DQV +K  I EV  D   ++             S S      G F S   
Sbjct: 295 ----------DQVMIKARIIEVNDDATSEMESVLQAVYHQWWLSFSSGVASLGFFDSSSP 344

Query: 244 DFSVKGVLDRFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                G            +  +  L      R LA+PT+  + G  A+     +  Y + 
Sbjct: 345 LAPSSGTAQGAGTVARMLDARIAGLVEKGKARVLADPTVVVLDGHKATIKLVDRVKYVSW 404

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRK 355
               G    +  + G  L  TP V S G + + +     E+ +   G    D+P    R+
Sbjct: 405 RDDAGNPGYSDEEVGPRLEVTPRVGSEGGMTISMALKTGEIVQWKRGGLGEDVPQISERE 464

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             ++V +  G   V+ GL K+ + +  + IP+L  +P+LG+LF
Sbjct: 465 VSSSVRVLDGQPFVVGGLFKESVSKTTQRIPVLGDLPLLGSLF 507


>gi|269792653|ref|YP_003317557.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100288|gb|ACZ19275.1| type II and III secretion system protein [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 589

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 61/346 (17%), Positives = 131/346 (37%), Gaps = 28/346 (8%)

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMV--SDTVVLHGMVRTIQDSQRAVELSETFL 168
              ++    +     +L + +     +   +   D   +   V+T+ +  R + + E   
Sbjct: 243 TYAVMGRTILVGKADSLAKSLGQEKTKAFEISYGDVKQISAQVQTLFEITRPIAVDERLR 302

Query: 169 SQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                 +    ++ ++ +N  +  G+ QV L+  I EV+ D ++++    +        S
Sbjct: 303 VMYVTGRPEQLAAVERFLNAADHPGK-QVMLQARIVEVKDDGVRELESVVNTVYRYWWLS 361

Query: 228 KSFAADFGG-----------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            S      G                          ++         +  + ALE A   +
Sbjct: 362 FSSKGGVLGYSRINQESVYKNDTNRVTKPGATDISAIAESGGLSLLDAGIKALENADKGK 421

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           TLA P++  + G+ A  +      Y +     G  + +    G  + F PTV   G + +
Sbjct: 422 TLASPSVVVVDGKEAKISLTENIKYISARDQAGNPTYSEEKVGPTMEFLPTVGRDGFVTI 481

Query: 331 RIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           ++     EV++ + G    ++P    R+  + V +  G   V+ GL +D     +  IP+
Sbjct: 482 KMTLKTGEVTKYIKGGLGEEVPQTSTREVTSYVRVRDGEPFVVGGLFRDSNTFSEYRIPV 541

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVAMRDLSR 429
           LS IP++G LF++    +E  E+ +   P ++     PV   ++  
Sbjct: 542 LSDIPLIGELFKSRTKKKERGEVAMIVIPHILDVPGSPVKTSEVHL 587


>gi|88797633|ref|ZP_01113222.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
 gi|88779805|gb|EAR10991.1| type 4 fimbrial biogenesis protein PilQ [Reinekea sp. MED297]
          Length = 709

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/254 (21%), Positives = 96/254 (37%), Gaps = 37/254 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS------------------------ITGSSSGPSKS 229
           +QV ++  I   R  +  Q+G +                          I G S  P  +
Sbjct: 460 EQVLIEARIVSARTSVGDQLGVRWGGAIFPSQNVFATGTVESSASIESDIYGGSPNPDLT 519

Query: 230 FAADFGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           F   F     + G   S    L   +    +  + ALE       +++P +    GQ+AS
Sbjct: 520 FPDAFAVNLPATGNASSFAVGLIADNLLDLDLEISALESLGEAEVVSQPKIVTSDGQAAS 579

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
             SG    +      T        + G+ L+ TP V    ++ L +         G    
Sbjct: 580 IFSGQNVAFPAEDGGT-----QFIEAGLNLNVTPQVTPDDKVILTLTVNQDSLAAGGG-- 632

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +       T V + +G T+VL G+ + +  QL E  P+L  +P++G LF+ +  + E
Sbjct: 633 ---AIDTNTVSTQVLVENGVTLVLGGVYRTEKTQLVEKAPILGDLPVVGNLFKRTTTSDE 689

Query: 407 ETEIFIAATPFLVK 420
            +E+ I  TP L++
Sbjct: 690 RSELLIFITPKLIQ 703


>gi|42522439|ref|NP_967819.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39574971|emb|CAE78812.1| fimbrial assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 726

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 55/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           LE    R    S  +V+ +   +        + D  R V    T        +     + 
Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230
           +++  L+     QV+++  I E +    + IG   S TG+            +  PS + 
Sbjct: 460 RLIASLD-TQPAQVSIEGKIVEAKESFTRNIGVNWSATGAPIKLGSTARGPVNMNPSFNV 518

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                G   +   + +V  +    +    L   E    ++ ++ P +  +S + A     
Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578

Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346
            +   + V+ +  AT          + L  TP V + G + +++          +     
Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   R+A+T V + +G T V+ G+ + D    + G+P   ++P +  LF+    ++E
Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSDATDGEVGVPWFRELPFVSYLFKTKNISKE 698

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++E+ I  TP ++  +     +     +
Sbjct: 699 KSELLIFLTPRIMGQIDNNAGNPTTTDF 726


>gi|11559475|dbj|BAB18788.1| GspD [Burkholderia cepacia]
          Length = 783

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 53/277 (19%), Positives = 98/277 (35%), Gaps = 41/277 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+     QV ++  I E+       +G Q  +         + A   G    +  
Sbjct: 400 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLAPTAGNGLGNSI 458

Query: 243 GDFSVKGVLDRFS-------------------------------FETVLHALERATAIRT 271
            + +  G+ +                                     +L      +    
Sbjct: 459 INLTAGGLTNAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANV 518

Query: 272 LAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           L+ P L  +  + A    G              + ++S    +    D G+ LH  P + 
Sbjct: 519 LSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQIT 578

Query: 324 SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G + L++ TE S  V    N+   P++  R   +T+   +G  IVL GL++D+ Q   
Sbjct: 579 DGGILKLQLYTEDSAVVNGTTNSQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSN 638

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 639 SKVPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 675


>gi|260220229|emb|CBA27559.1| Fimbrial assembly protein pilQ [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 696

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 134/369 (36%), Gaps = 39/369 (10%)

Query: 87  MYLFGKNVG--QANVILIGHDGKQMLN---LDILIERDIAHLEMTLRRFIADSNIRVEMV 141
           + L  K +G  +   +L      ++     LD+     + +LE    +    +  +   +
Sbjct: 324 IILQAKGLGMRKTGNVLWVAPKDEIAAKEKLDLETVVAVQNLEPLRTQAFQINYGKAADI 383

Query: 142 SDTVVLHGMVRTI-QDSQRAVELSETFLSQSGRN----QYANSSSKKVMNLLNIA--GED 194
           +  ++  G        + R +    + + ++  N        S  ++V  L+        
Sbjct: 384 AAGLIAAGSGPGQGVTASRILSSRGSVIFETRTNQLFVTDIPSKLEQVQQLIAKIDIAVR 443

Query: 195 QVTLKVTIAEVRRDILKQIGFQHS--------------------ITGSSSGPSKSF---- 230
           QV ++  I E      K +G +                      + GS++  S +F    
Sbjct: 444 QVLIEARIVEASDSFGKSLGVKLGGGGTAAASGDKPGIALGSSYVVGSAATTSGNFVNLP 503

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +    G         S+ G          + ALE     + ++ P +       A    G
Sbjct: 504 STGALGSSTPGQFAVSIFGAGADRFLNLEISALEAEGKGKVVSSPRVVTADQIKALIEQG 563

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +  Y+ V+SS+GATS+      + L   P +   G I L    +V++  +G +     +
Sbjct: 564 TELPYQ-VASSSGATSIAFRKANLKLEVLPQITPEGNIIL--TLDVTKDTVGQSTPAGFA 620

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              +   T V + +GGT+V+ G+  +     +  +P    +P LG LFRN      + E+
Sbjct: 621 IDTKHVQTQVLVENGGTVVIGGIFTESSTDSETKVPFFGDLPGLGVLFRNRAKEITKREM 680

Query: 411 FIAATPFLV 419
            +  TP ++
Sbjct: 681 LVFITPKVI 689


>gi|255595286|ref|XP_002536270.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
 gi|223520239|gb|EEF26113.1| Fimbrial assembly protein pilQ precursor, putative [Ricinus
           communis]
          Length = 536

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 133/359 (37%), Gaps = 42/359 (11%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   V     +       D   E  I   +  + +      I+ +  +D   L    +  
Sbjct: 177 GNTLVFAPKEEIAARRKQDQEQENQIDETKPLVTQSF---QIKYQKAADIKTLISDPKQP 233

Query: 155 QDSQRAVELSETFLSQS--GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
             S+R   + +   +         + +  ++++N ++I    QV ++  I +      K 
Sbjct: 234 LLSKRGTAVVDPSTNTMFVKDIDTSMTKIQEILNKIDIPSR-QVLIESRIVQANDTFGKS 292

Query: 213 IGFQHSITGSSSGPSKSFAAD---------------------------------FGGKFV 239
           +G +  +  +++  +K                                            
Sbjct: 293 LGARFGVVKNNALTAKGLNPGNDVLTSGSLSSTYATGQAKQTTTPDDLNVNLPASATAGT 352

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                 ++  +   F     L A E  + I+T++ P +   + Q+A+F +G +  Y+  +
Sbjct: 353 VSSAALTLLRLPAGFLLNMELSAAESDSKIKTISSPRVITANQQTATFDAGTEIPYQQAT 412

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           SS GATSV+     + ++ TP +    +I L    EV++  +G     +PS    K  T 
Sbjct: 413 SS-GATSVSFKKATLGVNVTPQITPDDKINLD--IEVTKDDVGQIFNGVPSIDTNKVKTK 469

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           V + +G T VL G L +      + +P  S IP++G LF+++     + E+    TP +
Sbjct: 470 VLVDNGETAVLGGFLIESKNDSNQRVPFFSSIPVVGNLFKSTLNTHSKKELLFFITPKI 528


>gi|221202224|ref|ZP_03575259.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
 gi|221208715|ref|ZP_03581714.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221214336|ref|ZP_03587308.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221165991|gb|EED98465.1| general secretion pathway protein D [Burkholderia multivorans CGD1]
 gi|221171347|gb|EEE03795.1| general secretion pathway protein D [Burkholderia multivorans CGD2]
 gi|221178018|gb|EEE10430.1| general secretion pathway protein D [Burkholderia multivorans
           CGD2M]
          Length = 768

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 102/300 (34%), Gaps = 41/300 (13%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+      Q+G Q  +
Sbjct: 367 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 425

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
              +     + AA  G    +   + +   V                             
Sbjct: 426 ASGALLAGTNLAATAGSVAGNSIINLTTGSVNSSTGTATGVGLPANLANLNQGLNIGWLH 485

Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
                     +L      +    L+ P L  +  + A    G      T         ++
Sbjct: 486 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 545

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
           S    +    D G+ LH  P +   G + L++ TE S       NA   PS+  R   +T
Sbjct: 546 SNAFNTYDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 605

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +G  IVL GL++D        +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 606 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 665


>gi|223938688|ref|ZP_03630578.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223892676|gb|EEF59147.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 785

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/265 (20%), Positives = 96/265 (36%), Gaps = 23/265 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH---------------SITGSSSGPSKSFAADFGGKFV 239
           QV ++  I EV  D  + +G  +               +I         +FA+       
Sbjct: 493 QVLIEAIIMEVTLDDTRDLGVSYLQTSPSGNNYFQGIGAIKNGPFASFSNFASTATNAAN 552

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S    FS     +   F   + A      I  L+ P +      +A+   G    Y T +
Sbjct: 553 SLPSGFSYLAQFNN-DFSATITAAATDNRINVLSRPRIQTSHAVTANLQIGDTVPYVTGT 611

Query: 300 -----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYR 352
                +   ++       G+ L  TP +   G + + I  +V +       +   +P+  
Sbjct: 612 YFGGLNGQASSQYQQTFVGINLQVTPLINPDGLVVMDITQDVQQLGTPTIIDNNPVPTTT 671

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R A   V +    TI+L G +     + K G+PLL  IP+LG LFR++  + + TE+ +
Sbjct: 672 KRTAQAKVSVKDRDTIILGGFISSTKSRSKSGVPLLMNIPVLGYLFRSTSDSNKRTELIV 731

Query: 413 AATPFLVKPVAMRDLSRPDDHYSVE 437
              P ++       L    +   + 
Sbjct: 732 LIRPTVLPTPEAAALVATRERDRLP 756


>gi|107021570|ref|YP_619897.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116688086|ref|YP_833709.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
 gi|105891759|gb|ABF74924.1| Type II secretion system gspD [Burkholderia cenocepacia AU 1054]
 gi|116646175|gb|ABK06816.1| general secretion pathway protein D [Burkholderia cenocepacia
           HI2424]
          Length = 774

 Score =  161 bits (407), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 52/269 (19%), Positives = 94/269 (34%), Gaps = 33/269 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            V++ L+     QV ++  I E+  +    +G Q  +         +     G       
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSNTSGNLGIQWQVASGQFLGGTNLNPTGGLGNSIIN 457

Query: 236 ----------------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                      +  +        +L      +    L+ P L  
Sbjct: 458 LTTGGTAATAGLAANLANLNQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLIT 517

Query: 280 ISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +  + A    G              + ++S    +    D G+ LH  P +   G + L+
Sbjct: 518 LDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDGGILKLQ 577

Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           + TE S  V    NA   P++  R   +T+   +G  IVL GL++D+ Q     +PLL  
Sbjct: 578 LYTEDSAVVAGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGD 637

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IP +G LFR+    R +T + +   P ++
Sbjct: 638 IPWIGQLFRSETKQRAKTNLMVFLRPVII 666


>gi|262193577|ref|YP_003264786.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
 gi|262076924|gb|ACY12893.1| type IV pilus secretin PilQ [Haliangium ochraceum DSM 14365]
          Length = 1269

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 86/260 (33%), Gaps = 34/260 (13%)

Query: 191  AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---FGGKFVSEGGDFSV 247
                Q+ ++  I E R    ++ G Q   +   +     F  +    GG   S+     V
Sbjct: 1003 TQTPQIQIEARIVEARSTFAREFGVQWGGSLLDANTGLVFPGNYGVVGGNTDSQTVGTGV 1062

Query: 248  K---------------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                                         V    +    L ALE    +R ++ P +T +
Sbjct: 1063 AAASPDFAVNLPAATGTGAGGALGFAFGSVGGGLNLTLRLSALEDTGTVRIISAPKITVL 1122

Query: 281  SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
            +   A               S            + L  TP V      I + +Q + +E 
Sbjct: 1123 NNVEA--EISQGVSIPISVISANGVQTQFVQADLSLEVTPHVSQRDCSIAMDLQIQKNEA 1180

Query: 340  VIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                      P+   ++A TTV +    T V+ G+   +       +P L  +P+LG LF
Sbjct: 1181 DFVNTGARGDPTILRKEASTTVLVADNETTVIGGIYTRNSGLSYSKVPFLGDLPLLGWLF 1240

Query: 399  RNSRFNREETEIFIAATPFL 418
            +N R N E TE+ +  TP +
Sbjct: 1241 KNRRENDERTEVLVFITPRI 1260


>gi|83648789|ref|YP_437224.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83636832|gb|ABC32799.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 561

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 103/277 (37%), Gaps = 29/277 (10%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG--------SSS 224
                 ++ ++ ++   +  + QV L+V I EV  +   + G   S           S  
Sbjct: 259 ATPSELTAVEEYLDKAQLVMQRQVILEVKILEVVLNKGFEQGVNWSYFDEFTSKVDASGD 318

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          + G +      L    F T+L  L     ++ L+ P ++ I+ Q 
Sbjct: 319 PTKSLTLGQTSRSVTNPGLEGVFSAALRINDFTTLLQLLGEQGTVQVLSSPRISTINNQK 378

Query: 285 ASFTSGGQHLYKTVSSSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A    G    + T   +  AT             +T    G+ L  TP +   G + L +
Sbjct: 379 AVIKVGDDEFFVTGIETNDATTTSGTSNLISEVEITPFFSGIALDVTPQIGENGDVTLHV 438

Query: 333 QTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
              VS+         + +           VR+ D+ ++  +G  +V+ GL+++  ++ + 
Sbjct: 439 HPTVSDVEDQTKTISLGANDLVLPLAFSSVRETDSVIKARNGQVVVIGGLIRNLTEKTQA 498

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +PLL  IP+LG  FR  R    ++E+ I   P +  
Sbjct: 499 KVPLLGDIPLLGHAFRQKRDTELKSELVILIRPIIAD 535


>gi|91786687|ref|YP_547639.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91695912|gb|ABE42741.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 717

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 92/257 (35%), Gaps = 36/257 (14%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSI---------------------------------T 220
            QV ++  I E      K +G +                                     
Sbjct: 455 RQVLIEARIVEASDTFGKSLGVRLGGRPFTLNGNRNAMFGATYIAPDITATSGAVRGQNF 514

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G+++G            + +     S+            + A E     + ++ P +   
Sbjct: 515 GTTAGDFVQLPGVGQNGYPASTFAISLFNSSVTRLLNLEISAAEADGKGKIVSSPRIVTA 574

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
               A    G +  Y+  +SS GATS+      + L  TP +   G I L    +V++  
Sbjct: 575 DQVKALIEQGTELPYQQATSS-GATSIAFRKANLKLEVTPQITPEGNIIL--NVDVNKDS 631

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +G    +  +   +   T V + +GGT+V+ G+ + + ++ +  +PLL  +P +G LF+ 
Sbjct: 632 VGRATANGFAIDTKHIQTQVLVENGGTVVIGGIFEQNDREDETKVPLLGDLPAIGNLFKT 691

Query: 401 SRFNREETEIFIAATPF 417
                 ++E+ +  TP 
Sbjct: 692 KTRTASKSELLVFITPK 708


>gi|284097759|ref|ZP_06385757.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830734|gb|EFC34846.1| Type II secretory pathway, component PulD [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 406

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 47/273 (17%), Positives = 100/273 (36%), Gaps = 15/273 (5%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +                  +    L+N+      QV ++  I E+       +G   S  
Sbjct: 132 VVNRLSGTIQVTDLHRRVEEVATFLVNVRNSLYRQVEIQARIYEIALRDEYSLGVDWSRI 191

Query: 221 GSSSGPSKSFAADFGGKFVSE--GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              +       A+              +     +   FE V+ AL+    ++ +++P + 
Sbjct: 192 ALRTPKGSFKLANIITAPAGGFLSRAATAAFSFNDGDFEGVIQALQEQGDVQVVSQPRIL 251

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ Q A    G    + T +++ G           V T   G+VL  TP +   G I +
Sbjct: 252 TLNNQPALIKVGTDQSFFTSTTTQGTAGAGNIVTEQVRTVTSGLVLSVTPQISRDGWIMM 311

Query: 331 RIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            +   ++     V   N    P   V+++   V +  G  +++ GL+++ +   +  +P 
Sbjct: 312 DVSPIITRLTDTVESRNGSTAPVLEVKQSGGLVRIRDGQLVMIGGLIQEQLTNTERAVPF 371

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  +P+LG+ F  +      TE+ I   P +++
Sbjct: 372 LGDLPVLGSFFSGTYQAERNTELVIFLMPRILR 404


>gi|91775689|ref|YP_545445.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709676|gb|ABE49604.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 653

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 72/396 (18%), Positives = 142/396 (35%), Gaps = 46/396 (11%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ ++        +       +  +    L   D   L   ++  +   +I ++
Sbjct: 256 KVLNDNTLLIYP-------LSRSQEYQETFVRSFYLSNTDAKKLMAMIKTVVKTKDIYID 308

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              +T+V+            A+  +E  +                        E +V L+
Sbjct: 309 EKLNTLVMRDTP-------EAIRTAEKLIMSQDM------------------AEPEVMLE 343

Query: 200 VTIAEVRRDILKQIGFQH------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           V + E+ R  L+ IG ++       + G  +    +                S  GV   
Sbjct: 344 VEVLEINRRSLENIGIRYPTNVSLDVQGRDTVNGTTTLTPGKLTINELKNFNSNLGVFSI 403

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310
                 L+ L++ T    LA P +   + + A    G +    T  +++    + +V   
Sbjct: 404 SDPVLALNLLQQDTDTNLLANPHIRVKNREKAKIHVGDRIPVLTSVANSTGFISQTVNYI 463

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGT 367
           + GV L   PT+L    + ++I  EVS         +     +   R A T + L  G T
Sbjct: 464 EVGVKLDVEPTILLRDEVSIKIGLEVSNQTDRMETSSGTVTYTIGTRNASTILRLKDGET 523

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            +LAGL+++D Q++  G+P LSK+P++G LF N+  +  + EI +  TP ++  +   + 
Sbjct: 524 QILAGLMRNDEQKITNGVPGLSKLPLIGKLFNNNNNDLSKKEIALFITPRIISNLTPENA 583

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                 +    D  A    R  +       +     
Sbjct: 584 IYTT--FPAGIDRSASRPGRAAEPGTVTAQAAPATP 617


>gi|21241466|ref|NP_641048.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21106808|gb|AAM35584.1| type II secretion system protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 692

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/397 (18%), Positives = 143/397 (36%), Gaps = 43/397 (10%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E  + + 
Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQVGQD 293

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + I V   S       +          V    +       +     +   V+  L++
Sbjct: 294 TRLATIDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
              +QV ++  + E+     K++G Q  + G +       ++   A  G   ++     +
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLVATQYSGASPGIVPLAAAAAGT 412

Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
             G  D  S                               F  ++ A++  T    L+ P
Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P LGALFR+   NR++T + +   P +++  A   
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629


>gi|124268293|ref|YP_001022297.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
 gi|124261068|gb|ABM96062.1| fimbrial biogenesis protein [Methylibium petroleiphilum PM1]
          Length = 721

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 41/281 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG------------FQHSITGSSSGPSKSF 230
           +++  ++I    QV ++  I E      + +G                I G+  G   + 
Sbjct: 444 QIIARIDIPVR-QVLIEARIVEATDTFGRSLGAKLGATVAPSSKVNAGIGGNYLGIGAAT 502

Query: 231 AADFG-------------------------GKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                           + +     S+            + ALE 
Sbjct: 503 GQAPPINSSGLTTGTPSTNSYFVNLPAVGQNGYDAATFAVSIFNSAMNRFLNLEISALEA 562

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +       A    G +  Y+  ++S+GAT++      + L   P +   
Sbjct: 563 DGKGKIVSSPRVVTADQVKALIEQGTEIPYQ-TATSSGATAIQFRKATLKLEVIPQITPE 621

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G I L    +V++   G           +   T V + +GGT+V+ G+ +   Q     +
Sbjct: 622 GNIILD--VDVNKDSPGATTAAGILINTKHVKTQVLVDNGGTVVIGGIYEQTEQIDNTKV 679

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PLL  +P+LGALFR+      +TE+ +  TP +V       
Sbjct: 680 PLLGDVPVLGALFRSQTRTSNKTELLVFLTPKVVTDRTAAA 720


>gi|58580784|ref|YP_199800.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58425378|gb|AAW74415.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 673

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  I G++                           
Sbjct: 391 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 450

Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
                            +     GG F +   G  +   +   F+ +  L A+++     
Sbjct: 451 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 510

Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            ++ P +   + +      G +     +  + +      +V   +  + L  TPT+ +  
Sbjct: 511 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 570

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 571 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 630

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +P L  IP LG LF+    ++E+ E+ +  TP +++  + 
Sbjct: 631 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 671


>gi|241762850|ref|ZP_04760913.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
 gi|241368025|gb|EER62230.1| type IV pilus secretin PilQ [Acidovorax delafieldii 2AN]
          Length = 712

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 43/266 (16%), Positives = 88/266 (33%), Gaps = 41/266 (15%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------------- 225
              QV ++  I E R    + +G +   T   +                           
Sbjct: 443 AVRQVLIEARIVEARDSFGRSLGVRLGGTDLRANRGGDGGYGIGGDNRVAFGTSYNNAVA 502

Query: 226 ------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                          +  A             S+            L A+E     R ++
Sbjct: 503 SSGAGGTTTTTGNFVNLPASLSNVNSVGSFALSIFNSAANRFLTLELSAMEADGKGRIVS 562

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P +       A    G ++ Y   +   GAT++      + L  TP +   G I L   
Sbjct: 563 SPRIITADQTKALIEQGTEYPYSITAP-NGATTLAFKKAVLKLEVTPQITPEGNIILD-- 619

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            ++++   G       +   +   T + + +GGT+V+ G+ + +    +  IP+L  +P+
Sbjct: 620 LDINKDSRGETTTQGVAIDTKHIKTQILIENGGTVVIGGIFEMEDTNQENKIPVLGDVPV 679

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           +G LF++      + E+ +  TP ++
Sbjct: 680 VGNLFKSRTKESTKREMLVFITPKVI 705


>gi|197117672|ref|YP_002138099.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
 gi|197087032|gb|ACH38303.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           bemidjiensis Bem]
          Length = 868

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/420 (17%), Positives = 150/420 (35%), Gaps = 72/420 (17%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            D  + +  T+ ++ K   +     +    +  L    L + D       +R  +    I
Sbjct: 241 LDKKILNESTIIIYPKTPDK-----VKQYEELFLQTFYLNKLDAKKAVNLVRTMLQVKKI 295

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   ++ +V+      I+ +++ +E              AN                +V
Sbjct: 296 YVNEEANALVIRDTPEVIEVARKILE--------------ANDVPD-----------AEV 330

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV----------------S 240
            L+V + E+ +   +  G   S   +S G +   +                        S
Sbjct: 331 LLEVEVFELSKQNAETFGLLLSRYATSLGVTAPGSTGTNPFLADTLGAVTTTTTTGTTTS 390

Query: 241 EGGDFSVKGVLDRFSFE-------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             G  ++  V +   +           +  +  +   TL+ P +   + + A F  G + 
Sbjct: 391 SAGPSNLLNVFNLRGYNGYLTVPNATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRV 450

Query: 294 LYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNA 345
              T SS      + +V   D GV ++  PT+     + +++  EVS       +    A
Sbjct: 451 PITTTSSPSGGGVSVNVQYVDVGVKVNAEPTIQLNNEVAIKLGLEVSSILNEKTIGTDQA 510

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             + +   R  DT + L  G T ++ GL++      K  + LL  IPILG LF N+   +
Sbjct: 511 TTVVTIGTRNLDTVLSLKDGETSIIGGLIQKTQTDSKSKVFLLGDIPILGPLFSNTSDKK 570

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           ++TE+ +A TP +V+ V              ++D  AF+  R ++    +  S     ++
Sbjct: 571 DKTELLLAITPRIVRGV-----------TVPDNDVAAFWSGREDEPSSHQPYSSFMEPDF 619


>gi|330820184|ref|YP_004349046.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
 gi|327372179|gb|AEA63534.1| type II and III secretion system protein [Burkholderia gladioli
           BSR3]
          Length = 697

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 83/446 (18%), Positives = 157/446 (35%), Gaps = 46/446 (10%)

Query: 2   RYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII 59
           R L+      T  S           + P      +  I      I +   ++   +  + 
Sbjct: 151 RRLRDALLRDTKASRAARPQLADALRKPVSLNFRSQPIGRIFEAISRVSGVNFVFDSEVQ 210

Query: 60  LQVPVD-VQDVLVSDPTK--------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
             +P         ++            +  V    T+ ++     +A         +  +
Sbjct: 211 ADMPASLFARRTTAENAIELLLRTSQLEKRVLDRHTLLVYPARPEKA-----RDYREFAI 265

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
               L   +   +   LR+ +   +I V+   + +VL     TIQ +             
Sbjct: 266 RTFFLSHAEAKSVMAALRQMVKPKDIYVDERVNAIVLRDTPETIQVA------------- 312

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                      ++V+  L+I   + VTL V + EV  +    +G Q+      S      
Sbjct: 313 -----------ERVVIGLDIPQSE-VTLDVQVLEVNVNDSVDLGLQYPGKIQFSALGAGE 360

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                   +       +    +  +    +  L++    RTLA P +   + + A+   G
Sbjct: 361 EVGLTLGDLLRLNRDRIGVASESGALSMAIDMLQKQGKTRTLANPKIRVRNLEKANIRIG 420

Query: 291 GQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNA 345
            +    T ++  G    SV+  D G++L   P V     + +++  EVS         + 
Sbjct: 421 ERVPIVTTTNGNGVVTESVSYQDVGLMLKVQPRVSLDDEVSVKVSLEVSNILSEQRTRSG 480

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
               S   R ADT +   +G T VLAGL+K    + + G+P LS +P+LG LF + R   
Sbjct: 481 LVAYSLGTRNADTLMTARNGQTQVLAGLIKRSEIESRAGLPWLSSLPVLGRLFGSERTRN 540

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPD 431
           EETEI +  TP + + + + + +   
Sbjct: 541 EETEIVLLITPHIERRLDLPEAAVTT 566


>gi|162146314|ref|YP_001600773.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209543683|ref|YP_002275912.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161784889|emb|CAP54432.1| putative general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209531360|gb|ACI51297.1| general secretion pathway protein D [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 772

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 70/323 (21%), Positives = 114/323 (35%), Gaps = 17/323 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDI 209
            + +   +A+ +       +      +  S  V  +L        QV +   IAEV+ + 
Sbjct: 438 ASAEGRPQAMRIISNSQHNAILVYGTDQESDTVEQMLRRIDVMPLQVRIDAVIAEVQLND 497

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS------VKGVLDRFSFETVLHAL 263
             Q G Q            S  +            FS      + G          + AL
Sbjct: 498 ALQYGTQFFFKSGGINGVLSTNSQTITTGTLATAAFSHTLPGFIIGGASGGGAPFAIDAL 557

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-----ATSVTTHDYGVVLHF 318
           +  T +  L+ P L     ++A    G     +  S S+          T    GV++  
Sbjct: 558 QNVTTVHVLSSPQLMVQDNRAARLQVGQLVPVQIGSQSSTIGTSIYNQFTYQPTGVIMQV 617

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLL 374
           TP V   G + L +  EVS       +       P++  R   + V +  G T+ LAGL+
Sbjct: 618 TPHVSEGGLVTLDVSQEVSSVSPTAASTANAASNPTFNDRSVSSRVVVQDGQTVGLAGLI 677

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            D   ++  GIP L  IP+LG L  N   NR+ TE+ I  TP ++           D   
Sbjct: 678 TDSSSRINSGIPWLKNIPVLGVLAGNQNNNRQRTELLILMTPHVIHDQRDAVDLMEDLRD 737

Query: 435 SVEDDAKAFFFNRVNKIYGPKEA 457
           +  + A      RV ++ G  + 
Sbjct: 738 THPNAANVPDELRVMRMTGSADP 760


>gi|59712900|ref|YP_205676.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
 gi|59481001|gb|AAW86788.1| pili ecretion protein PilQ [Vibrio fischeri ES114]
          Length = 582

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/454 (18%), Positives = 157/454 (34%), Gaps = 57/454 (12%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV 79
            PS+  +      +     IS     K K ISI    + +  V   + D    +   AD 
Sbjct: 130 GPSLQVVVSQLPESEKKSPISSNNEDKSKPISINFQDIPVRHVLQLIADYNDFNLVVAD- 188

Query: 80  VVHSPRTMYLFG------------------KNVGQANVILIGHDGKQMLNLDILIERDIA 121
            V    T+ L G                  +  G   +I    +        +   +  +
Sbjct: 189 SVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVEGNVVLIAPKTELDAQEQQVLEQAQMAS 248

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            L       ++    +   +++ +V  G +  +           T            +  
Sbjct: 249 ELAALSSEILSIKYAKASDIAELLVGEGEITMLSSRGSITVDERTNSLLLRDLPENITVI 308

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS- 240
           K +++ L+I  + QV ++  I  V    L ++G +  IT ++   +   + +     V  
Sbjct: 309 KDIIDTLDIPIK-QVQIEARIVTVNEGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGL 367

Query: 241 --EGGDFSVKGVLDRFSFETVLHA-------------------------------LERAT 267
              GG    K   +    +  L+                                L+  +
Sbjct: 368 YDGGGSDDKKSGNNSLPVDDFLNVNLGLANPAASSIAFQVAKLGSDLLLDLELSALQAES 427

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               ++ P L   + + A    G +  Y    SS+GATSV+     + L  TP +    R
Sbjct: 428 KAEIISSPRLITTNKKPAYIEQGTEIPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNR 486

Query: 328 IGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + L +      P  V+    G+  +   ++  T V + +G T+VL G+ +  +    E +
Sbjct: 487 LVLDLTVTQDRPGQVVKTGTGEAVAIDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKV 546

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  +P+LGALFR S  N  + E+ I  TP +V
Sbjct: 547 PVLGDLPLLGALFRRSSENIGKKELLIFVTPKVV 580


>gi|46398274|gb|AAS91828.1| AscC [Aeromonas hydrophila]
          Length = 618

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 102/315 (32%), Gaps = 20/315 (6%)

Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQS 171
            + +   L   L R ++D+ ++ V          V  G      D      +      + 
Sbjct: 212 TDVEAPGLATILARLLSDAGVQMVNGEGNKKGAAVTSGQAIVQADPSLNAVIVRDTPERM 271

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  ++  K    + +A          I ++  + L Q+G    +   +    +   
Sbjct: 272 AMYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVII 323

Query: 232 ADFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G            S+            ++ LE     + ++ PTL       A    
Sbjct: 324 KTTGDRKGIEGAAALGSLVDSKGLDYLLARVNLLENEGNAQVISRPTLLTQENTQAVIDH 383

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLRIQTEV-SEPVIGVNA 345
              +  K   S      +    YG +L  TP    +     I L +  E  S+   G  A
Sbjct: 384 SETYYVKI--SGERVAELQGITYGTMLRMTPRVVQMWDKPEISLSLHIEDGSQKPNGTGA 441

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+ +    DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+     
Sbjct: 442 DGLPTIQRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQT 501

Query: 406 EETEIFIAATPFLVK 420
             +       P L+ 
Sbjct: 502 RRSVRLFIIEPRLID 516


>gi|39995438|ref|NP_951389.1| general secretion pathway protein D [Geobacter sulfurreducens PCA]
 gi|39982201|gb|AAR33662.1| general secretion pathway protein D, putative [Geobacter
           sulfurreducens PCA]
          Length = 632

 Score =  161 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
           +V+  L+     QV ++  IAEV  D LK +G Q       + G +   A      F+S 
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407

Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         +    S    + AL    AI  L+ P +     + A    G    +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
                  +      S+   D G+ L  TP +     + L I  E+S         +    
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+     RE+T + 
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 588 IVLTPRIIR 596


>gi|307634685|gb|ADI83160.2| type II secretion system lipoprotein GspD, putative [Geobacter
           sulfurreducens KN400]
          Length = 632

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/249 (24%), Positives = 96/249 (38%), Gaps = 12/249 (4%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSFAADFGGKFVSE 241
           +V+  L+     QV ++  IAEV  D LK +G Q       + G +   A      F+S 
Sbjct: 349 QVIQKLDKR-RRQVFVQALIAEVSLDKLKDVGVQIGALAVGTQGDASGGAVLDPFNFLSA 407

Query: 242 GGDFSVKG------VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                         +    S    + AL    AI  L+ P +     + A    G    +
Sbjct: 408 TSGPQFLLVKALEELGKNVSVSAQVKALVSDGAINVLSTPNILTSDNKEAEIFVGENVPF 467

Query: 296 ----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
                  +      S+   D G+ L  TP +     + L I  E+S         +    
Sbjct: 468 LSQTNLTTGGISQQSIERKDTGITLRITPQISEGEYVKLDIYQEISAVKENKGQANDLVT 527

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R A T V +    T+V+ GL++D   +    IPLL  IP+LG LF+     RE+T + 
Sbjct: 528 TKRSAKTAVVVKDKDTVVIGGLIQDRDTETINKIPLLGDIPLLGWLFKTKSTRREKTNLM 587

Query: 412 IAATPFLVK 420
           I  TP +++
Sbjct: 588 IVLTPRIIR 596


>gi|288817748|ref|YP_003432095.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787147|dbj|BAI68894.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308751347|gb|ADO44830.1| type II and III secretion system protein [Hydrogenobacter
           thermophilus TK-6]
          Length = 700

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 66/351 (18%), Positives = 137/351 (39%), Gaps = 19/351 (5%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
            T+ +F + +G ++              +I   + +   +   ++   ++  + E +   
Sbjct: 326 NTLGIFEEGIGISSQQ-QAQTEAPRSTQEITKIQALPPTDQKPKQTTPETQ-KKEEMPPA 383

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------KKVMNLLNIAGEDQVTL 198
           V+        ++ ++ V++      +S       ++       + ++  L++    QV +
Sbjct: 384 VIEEKAKSEAKEEKKIVKVGNIVADKSTNTLIIKATPIEFEVIRSLLRELDV-VPKQVLI 442

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-RFSFE 257
           ++ IAEV      Q G +  + G     S +    FG    ++        + +      
Sbjct: 443 EMVIAEVSLGKGLQYGVEGLLKGFLDSSSFTIGTSFGLAPQADTLQGFKTIIFNKNNDIR 502

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTS-------GGQHLYKTVSSSTGATSVTTH 310
            +L+ L   T+++ L+ P +     + A             Q +  T  +      V   
Sbjct: 503 GILNFLASKTSLKVLSAPHILVKDNEEAKIEVGAEVPILTQQIVPVTGGTLNVQNMVQYR 562

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
             GV+L   PTV +   + L+I  EVS+ V          P    R A TT+ L +    
Sbjct: 563 TTGVILKVRPTVSADNSVTLKITQEVSDAVKNTVQPELTSPLITKRSASTTLILRNDQVG 622

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L G++++ +Q+ K G+PLLS IP LG LF N   +   TE+ +     ++
Sbjct: 623 LLGGIIQNRLQRQKSGVPLLSDIPGLGILFSNESVSSSNTELILLIKASVI 673


>gi|330815292|ref|YP_004358997.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
 gi|327367685|gb|AEA59041.1| Type II/III secretion system protein [Burkholderia gladioli BSR3]
          Length = 658

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 70/455 (15%), Positives = 150/455 (32%), Gaps = 89/455 (19%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
             +        ++IS+ L +  +  V                    + +++ L G+  G 
Sbjct: 162 PVVVPRAAADRRRISLDLRQAPLAAVFDAFAR-------------FTGQSVVLSGRVQGS 208

Query: 97  ANVI------------LIGHDG-KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
           A +             L+  +G    +  D++     A L    R    +++ R+  +  
Sbjct: 209 ATLRIHDVPWRDAFDALLDANGLAMAMRGDVIWVAPAAELTARERARF-EAHARMADLEP 267

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------------- 190
                 ++R  + +  A  L+    +Q   ++  +  +    NLL +             
Sbjct: 268 LASRTFLLRYPRANDVARLLTGAVANQRVLSRRGSVLADARTNLLFVTDLDGRLAQIAAL 327

Query: 191 -----AGEDQVTLKVTIAEVRRDILKQIGFQH---------------------------- 217
                    QV ++  + E  R   +++G +                             
Sbjct: 328 VAQLDRPSRQVLIEARVVEGERGFSRELGARIALRTTRSLARGEGAGSGGAPGPAQPAAG 387

Query: 218 -------------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                         + G   G     AA   G F +     ++         +  L ALE
Sbjct: 388 EGAPAGSGKPPATGLVGGPEGRLADLAARPIGGFEAATAGLTLFVAGASRLLDLELSALE 447

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                + ++ P +       A    G +  Y+      G + V      + L   P +  
Sbjct: 448 SQGRGQIVSRPRVVTADRAPALIEQGTELPYQ-AKVGRGVSGVQFRRATLKLEVEPQITP 506

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G + L +  ++++  +G      P+   +   T VE+ +GGT+ + G+ + +       
Sbjct: 507 DGHVVLDL--DIAKDSVGEQTDAGPAIHTKHVRTRVEVENGGTVSIGGIYERNEWDDVTR 564

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+L KIP+LGALFR+     + +E+ +  TP ++
Sbjct: 565 VPVLGKIPVLGALFRHKARREQSSELVVYITPRVL 599


>gi|300023665|ref|YP_003756276.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525486|gb|ADJ23955.1| general secretion pathway protein D [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 773

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 117/289 (40%), Gaps = 16/289 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
            G   +   S   V ++    +     + +  + KK++ +L+       QV +  T+AEV
Sbjct: 440 EGPQSSAATSSDQVRVTPDERNNKLLIKASERNYKKILQILHRVDQPPLQVLINATLAEV 499

Query: 206 RRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
             +   Q G Q  +           F+              ++           +L AL 
Sbjct: 500 TLNKNLQYGVQFFLQKNHGKSGGIGFSTSDALAIAPVMPGLNLIAGNIGSDPRVILDALA 559

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLH 317
           + TA+R ++ P++  +  Q A    G Q               S     +   + GV+L+
Sbjct: 560 KETAVRIVSSPSVVVLHNQQAILEVGDQVPIITREAQSVINPDSPTVNEIEFKNTGVILN 619

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAG 372
            TP + S G + + +Q EVS         D      P+   R+  +T+ + SG  +VL G
Sbjct: 620 VTPRINSNGLVTMEVQQEVSAVQNTSGQSDAATSLTPTISQRRVTSTIAVQSGQMVVLGG 679

Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLVK 420
           L+++++ + K  IP+++KIP LG  L   +   R  TE+ +   P +++
Sbjct: 680 LIREEVSRSKSSIPVINKIPYLGDVLGGETDNGRTRTELVVFIRPIVIR 728


>gi|108757430|ref|YP_630733.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
 gi|108461310|gb|ABF86495.1| general secretion pathway protein D [Myxococcus xanthus DK 1622]
          Length = 863

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 58/359 (16%), Positives = 114/359 (31%), Gaps = 63/359 (17%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQDSQRAVELSETFLSQSGR 173
               +       +      +           +  G V+ +      ++ +  +       
Sbjct: 361 QGTGNAPRGRTPVPARPPGAPGGPTTTQAAELFSGEVKISADKGSNSLVIVASSADYKNI 420

Query: 174 NQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
                    +V+  L+     QV ++  I EV  D   ++G       S S  +      
Sbjct: 421 V--------QVIQQLD-KPRRQVFVEAVIMEVNLDRNARLGMNLHSGFSLSTSNGDQVPG 471

Query: 234 FGGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIR 270
             G   S                        G        L   +F  VLHA+++++ + 
Sbjct: 472 LIGTNTSGQGLPPSLSLTSLASYGGFLAGIQGPVIPALEKLGIPAFGVVLHAMQQSSDVN 531

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------------------------- 303
            L+ P +     + A  T G    +++  + T                            
Sbjct: 532 VLSTPHILTSDNEEAEITVGQNVPFQSGFNPTSLGSLGAGVGGGAGALGGGLLGGLGGLG 591

Query: 304 --ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                +T  +  + L   P +     I L I  +  E          P+   R A TTV 
Sbjct: 592 SLYAPITRQNVELKLTVKPQINESDYIRLVINQQTEEIASTDPVLG-PTTSRRSAKTTVI 650

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                T+V+ G+++D   +    +PLL  IP+LG LFR++   + +T + +  TP++++
Sbjct: 651 ARDQETLVIGGIMQDRTLESVSKVPLLGDIPLLGHLFRDTTRRKTKTNLLLFLTPYIIR 709


>gi|121603667|ref|YP_980996.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
 gi|120592636|gb|ABM36075.1| general secretion pathway protein D [Polaromonas naphthalenivorans
           CJ2]
          Length = 738

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/276 (22%), Positives = 102/276 (36%), Gaps = 33/276 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS--KSFAADFGGK----------- 237
           A   QV ++  IAEV  D   + G Q        G S       +FG             
Sbjct: 406 ARRAQVYVESLIAEVNMDKAAEFGIQWQGPIGGKGDSLIGLLGTNFGSSGKNIIQSAIGA 465

Query: 238 ------FVSEGGDFSVKGVLDRFSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSG 290
                     G +  V    +   F   L + L+ + A   L+ P L  +  + A    G
Sbjct: 466 ASGTPLAPGTGLNLGVAARSNGVYFLGFLANFLQTSGAGNILSTPNLLTLDNEEAKIIIG 525

Query: 291 GQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
               + T   +               ++   D G+ L   P +   G + + I  EVS  
Sbjct: 526 QNVPFVTGQFTNTGSGGSNGSVNPFQTIERKDVGLTLRVKPQISENGTVKMAIFQEVSSV 585

Query: 340 VIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
             G VN+        R  ++ V +  G  IV+ GLL+D+    +E +P L  +P+ G LF
Sbjct: 586 QPGSVNSVTGLITNKRSIESHVLVEDGSIIVIGGLLQDEFAGNQEKVPGLGDVPVFGNLF 645

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++   +R++T + +   P +V+  A    +   D Y
Sbjct: 646 KSESRSRKKTNLMVFLRPVVVRDGAATS-ALSMDRY 680


>gi|170699037|ref|ZP_02890094.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
 gi|170136073|gb|EDT04344.1| general secretion pathway protein D [Burkholderia ambifaria
           IOP40-10]
          Length = 770

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 54/294 (18%), Positives = 103/294 (35%), Gaps = 35/294 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+       +G Q  +
Sbjct: 370 IQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQV 428

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFS-------------------------VKGVLDRF 254
                    + AA  G    +   + +                         +  +    
Sbjct: 429 ASGQFLGGTNLAAAAGNVAGNSIINLTTGGTAATTGIAANLANLNQGLNIGWLHNMFGVQ 488

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATS 306
               +L      +    L+ P L  +  + A    G              + ++S    +
Sbjct: 489 GLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNT 548

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSG 365
               D G+ LH  P +   G + L++ TE S       NA   P++  R   +T+   +G
Sbjct: 549 YDRRDVGLTLHVKPQITDGGILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNG 608

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             IVL GL++D+ Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 609 EIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKQRQKTNLMVFLRPVII 662


>gi|325521649|gb|EGD00419.1| general secretion pathway protein D [Burkholderia sp. TJI49]
          Length = 699

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 102/307 (33%), Gaps = 41/307 (13%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T       +     + + V++ L+     QV ++  I E+      Q+G Q  +
Sbjct: 368 IQADAATNSLIITASDPVYRNLRAVIDQLDKR-RAQVYIEALIVELNSTTAGQLGIQWQV 426

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------------------ 255
              +     + AA  G    +   + +   V                             
Sbjct: 427 ASGALLAGTNLAATAGSVAGNSIINLTAGTVNSSTGTLTGVGLPANLSNLNQGLNIGWLH 486

Query: 256 -------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SS 300
                     +L      +    L+ P L  +  + A    G      T         ++
Sbjct: 487 NMFGVQGLGALLQYFAGVSDANVLSTPNLITLDNEEAKIVVGENVPIPTGSYSNLTSGTT 546

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTT 359
           S    +    D G+ LH  P +   G + L++ TE S       NA   PS+  R   +T
Sbjct: 547 SNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVDTATTNAQTGPSFTKRSIQST 606

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   +G  IVL GL++D        +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 607 ILADNGEVIVLGGLMQDAYNVSNSKVPLLGDIPWIGQLFRSESKQRKKTNLMVFLRPVII 666

Query: 420 KPVAMRD 426
                  
Sbjct: 667 SDRDTAQ 673


>gi|312882785|ref|ZP_07742519.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309369569|gb|EFP97087.1| type IV pilus assembly protein PilQ [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 409

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 52/239 (21%), Positives = 94/239 (39%), Gaps = 11/239 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------FGGKFVSEG 242
               QV ++  I  ++   L+ +G +  I    + PS     +                 
Sbjct: 172 RPIKQVQIEAYIVTIQEGNLEDLGIRWGIQTQPNQPSMISQVNEAMLDVDLSMVAPSPSN 231

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F +  +      +  L AL++ +    ++ P L   + + A    G +  Y   +SS 
Sbjct: 232 TAFRMARLSQNILLDMELSALQKESKAEVISNPKLLTTNKRPAYIEQGSEIPYLEAASSG 291

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTV 360
            A+        + L  TP + S   + L +Q     P   +N G     +   ++  T V
Sbjct: 292 AASI-AFKKAVLSLKVTPKITSKNDLLLDLQVTQDRPGNPINTGSGQAVAIDTQRIGTQV 350

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +  G TIVL G+ +  +    + IPLL  +P+LGALFR +      +E+ I  TP ++
Sbjct: 351 LVKDGETIVLGGIFQHSLSNAVDKIPLLGDVPLLGALFRRNYLQENRSELLIFVTPKVL 409


>gi|197335785|ref|YP_002155116.1| general secretion pathway protein D [Vibrio fischeri MJ11]
 gi|197317275|gb|ACH66722.1| general secretion pathway protein D [Vibrio fischeri MJ11]
          Length = 548

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  +     +       K+ +   +   + QV L+  + EV      Q G   S   +S 
Sbjct: 241 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 300

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275
           G +        G            G L            +F+ VL  ++    +  L+ P
Sbjct: 301 GGTDVVFGQTPGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 360

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
            +TA + Q A    G    Y T  SS          +   ++T    G+ L  TP +   
Sbjct: 361 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 420

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
           G + L +   V +    V   D+               +R++D+ +   SG  +V+ GL+
Sbjct: 421 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 480

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           K         +PLL  +P LG LFRN     ++TE+ I   P +V
Sbjct: 481 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 525


>gi|212633381|ref|YP_002309906.1| type II and III secretion system protein:secretin [Shewanella
           piezotolerans WP3]
 gi|212554865|gb|ACJ27319.1| Type II and III secretion system protein:Secretin [Shewanella
           piezotolerans WP3]
          Length = 558

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 57/249 (22%), Positives = 95/249 (38%), Gaps = 23/249 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD- 252
            QV L+  + EV      Q G         +G +           +S+     + GV   
Sbjct: 286 RQVILEAKVLEVTLSDGYQQGIHWESVLGHAGSTDITFGTSPTTGLSDQITSVLGGVTSI 345

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS--------- 300
                 F T++  L+    +  L+ P +TA + Q A    G    + T  S         
Sbjct: 346 QLKGSDFSTMISLLDTQGDVDVLSSPRVTASNNQKAVIKVGTDEYFVTDVSSTTVAGTTP 405

Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR------- 352
            +T    +T    G+ L  TP + + G + L I   V +         +           
Sbjct: 406 VTTPEVELTPFFSGIALDVTPQIDAEGNVLLHIHPSVIDIKEQTKTIKISDSTLELPLAQ 465

Query: 353 --VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R++DT ++  SG  +V+ GL+K +  +L   +PLL  IP LG  F N   +  +TE+
Sbjct: 466 SEIRESDTVIKAASGDVVVIGGLMKSENIELVSKVPLLGDIPYLGEAFTNRANSTVKTEL 525

Query: 411 FIAATPFLV 419
            I   P +V
Sbjct: 526 VILLKPVVV 534


>gi|59710966|ref|YP_203742.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
 gi|59479067|gb|AAW84854.1| MSHA biogenesis protein MshL [Vibrio fischeri ES114]
          Length = 546

 Score =  160 bits (405), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 61/285 (21%), Positives = 103/285 (36%), Gaps = 30/285 (10%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
           +  +     +       K+ +   +   + QV L+  + EV      Q G   S   +S 
Sbjct: 239 QASVVTITASPDELRKVKQFLGTSHKRLQRQVILEAKLLEVTLSDGYQQGINWSNLTASL 298

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVL---------DRFSFETVLHALERATAIRTLAEP 275
           G +        G            G L            +F+ VL  ++    +  L+ P
Sbjct: 299 GGTDVVFGQTSGLVQGALPGMDTIGTLLGGQTNITVSDGNFQAVLSFMDTQGDLNVLSSP 358

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSP 325
            +TA + Q A    G    Y T  SS          +   ++T    G+ L  TP +   
Sbjct: 359 RVTAANNQKAVIKVGRDEYYVTEVSSVTGSGDNSNASPEVTLTPFFSGISLDVTPQIDDK 418

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLL 374
           G + L +   V +    V   D+               +R++D+ +   SG  +V+ GL+
Sbjct: 419 GNVMLHVHPSVIDVENEVKEIDLGDVGGVLKLPLAKSSIRESDSVIRAKSGDVVVIGGLM 478

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           K         +PLL  +P LG LFRN     ++TE+ I   P +V
Sbjct: 479 KSQTVDQVSKVPLLGDVPALGHLFRNVSQLTQKTELVILLKPTVV 523


>gi|223935099|ref|ZP_03627017.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895983|gb|EEF62426.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 612

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 65/370 (17%), Positives = 124/370 (33%), Gaps = 54/370 (14%)

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS-DTVVLHGMVRT 153
           G  N+ ++     ++  + +        L   +        I+++  +   +VL+     
Sbjct: 197 GNYNLTIVDDPRTKIARITVKDPAAPEPLVTRV--------IQLKYANVTNIVLNVTGVL 248

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                R      T            ++  +++  L+     QV ++  + E  ++     
Sbjct: 249 QDKRSRVAADVRTSQLVVLATDRELTAVDELVAKLD-TATKQVLIEARLVETSKNPTTAK 307

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFV---------------------------------- 239
           G   + T ++        +     F                                   
Sbjct: 308 GVDWTGTAAAQNVRFGNNSILAAPFTRGTPPTPANPFGTPDQQAVPSTILDPTQPMIAAN 367

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +  G       L+      VL  L      + L+ P    +  ++A+ +          +
Sbjct: 368 THNGFLPNTFFLNADGASAVLSFLNTDNDAQVLSTPRAVTLDNETATLSVTRAQPIFKTT 427

Query: 300 SST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV------NAGDMP 349
           + T    G + VT  + G +L  TP + +   I LR+  EVS               +  
Sbjct: 428 AGTQGSPGGSEVTYTNVGTILKVTPRISANKMISLRVIPEVSSVAGTDRKIVSGQINEAD 487

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            + VR  DT V +PSG T+V+ GL+ DD  +    +PLL  IP LGA FR+    + +  
Sbjct: 488 IFDVRHIDTQVLIPSGNTLVMGGLVSDDRTKSYIKVPLLGDIPYLGAAFRHESKTQNKKN 547

Query: 410 IFIAATPFLV 419
           + I  TP +V
Sbjct: 548 LIIFVTPTIV 557


>gi|221133689|ref|ZP_03559994.1| type IV pilus secretin PilQ [Glaciecola sp. HTCC2999]
          Length = 473

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 79/421 (18%), Positives = 146/421 (34%), Gaps = 60/421 (14%)

Query: 51  SIGLNKVIILQV-PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           S+   K I L    V V+ VL       D  + +  T+       G   + L      Q 
Sbjct: 59  SVYTGKPISLDFKDVPVRQVLQIIAQLNDYNLVTTDTV------TGNVTINLQDVPWDQA 112

Query: 110 LNLDILIERDIAHLEMTL------RRFIADSNIRVEMVSDTVVLHGMVR-----TIQDSQ 158
           L   + I      +E  +         +A  N  ++    T  L  +V          ++
Sbjct: 113 LATILNIRGLDQRIEGNIIIIAPHDELLARENALIQSQQQTQDLAPLVSRNHRVNYAKAE 172

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------QVTLKV 200
           +  ++ ++       N+ A +  ++  N + +                      QV ++ 
Sbjct: 173 QIAQIIQSTNGGILSNRGAVAVDER-TNTILLRDTQTSIDTAIQMIKELDIPVRQVLIES 231

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------------------VS 240
            +  VR +I  QIG +  ITG     + S +A                           +
Sbjct: 232 RMITVRDNIDDQIGIRWGITGQKGHLAVSGSAAAANDIKAGIIPDISDRLNVNLPIVNSA 291

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                 +  ++D    +  L ALE       +A P +T  + Q A    G +  Y    +
Sbjct: 292 GRLGVQIASLMDGTILDLELSALETENKGEIIASPRITVANQQEAYIEQGTEIPYVQS-T 350

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADT 358
           + G+TSV      + L   P +    RI L +          V+    P+     ++  T
Sbjct: 351 ANGSTSVAFKKAVLSLKVIPQITPDDRIILDLVITQDTRGETVSTATGPAVAIDTQEIKT 410

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G TIVL G+ +         +P+L  +P++G LF+N     ++ E+ I  TP +
Sbjct: 411 QVLVENGETIVLGGIFQKISTNDIAKVPILGNVPLVGGLFKNKVSIEQKRELLIFVTPKI 470

Query: 419 V 419
           +
Sbjct: 471 I 471


>gi|84622715|ref|YP_450087.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84366655|dbj|BAE67813.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 649

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  I G++                           
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 426

Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
                            +     GG F +   G  +   +   F+ +  L A+++     
Sbjct: 427 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 486

Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            ++ P +   + +      G +     +  + +      +V   +  + L  TPT+ +  
Sbjct: 487 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 546

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 547 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 606

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +P L  IP LG LF+    ++E+ E+ +  TP +++  + 
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 647


>gi|50086334|ref|YP_047844.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
 gi|12642803|gb|AAK00351.1|AF329876_7 putative outer membrane protein ComQ [Acinetobacter sp. BD413]
 gi|49532310|emb|CAG70022.1| putative outer membrane protein (ComQ) [Acinetobacter sp. ADP1]
          Length = 723

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 112/318 (35%), Gaps = 38/318 (11%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
           + +  VE + D+V   G + + + +      + T +      +       K+++LL+I  
Sbjct: 405 NGSATVEPLGDSV---GTLLSPRGTISLDPRTNTLIINDTSQKIDQIR--KMIDLLDIPV 459

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD------------------- 233
           + QV ++  I        K++G +  I       + +                       
Sbjct: 460 K-QVMIEARIVRATTSFSKEMGVKWGILSQGINQNSNLLVGGSETTLWNLRNPDSNGTYT 518

Query: 234 ----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                      G               L  F  +  L AL+       ++ P + +   Q
Sbjct: 519 IERPDNLNVDLGVTTTGASSIAFGLISLSDFMLDLELSALQADGYGEVISTPKVMSADKQ 578

Query: 284 SASFTSGGQHLYKTVSSS--TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
            A   +G +  Y++ ++S      + +  +  + L  TP +   G+I + +    ++ + 
Sbjct: 579 KAKVATGVEVPYQSTTNSAAGSTATTSFKEALLSLEVTPNITPDGKILMELNIA-NDSIN 637

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                          +T V + +G T+VL G+ +         +P L  +P +G LF+ +
Sbjct: 638 SYAQNGEAILNKNTINTNVLVNNGETVVLGGVFEQTTNNAVTKVPFLGDLPYVGRLFKKT 697

Query: 402 RFNREETEIFIAATPFLV 419
             +  + E+ I  TP +V
Sbjct: 698 AKSEAKNELLIFVTPRIV 715


>gi|78046312|ref|YP_362487.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034742|emb|CAJ22387.1| type II secretory pathway protein D [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 689

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 231 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 290

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   S       +          V    +       +     +   V+  L++
Sbjct: 291 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 350

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
              +QV ++  + E+     K++G Q  + G +       ++   A  G   ++     +
Sbjct: 351 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 409

Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
             G  D  S                               F  ++ A++  T    L+ P
Sbjct: 410 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 469

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 470 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 529

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 530 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 589

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443
            +P LGALFR+   NR++T + +   P +++     + ++ P  +Y  E      D +A 
Sbjct: 590 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQRMTAPRYNYLRERQLADGDPEAA 649

Query: 444 FFNRVNKIYGPKEASEVEGQN 464
               V      +      G +
Sbjct: 650 LDALVRDYLRAQPPQLPAGPS 670


>gi|188578246|ref|YP_001915175.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188522698|gb|ACD60643.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 655

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  I G++                           
Sbjct: 373 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYLNTSAKRASEIA 432

Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
                            +     GG F +   G  +   +   F+ +  L A+++     
Sbjct: 433 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 492

Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            ++ P +   + +      G +     +  + +      +V   +  + L  TPT+ +  
Sbjct: 493 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 552

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 553 RVFLNMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVS 612

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +P L  IP LG LF+    ++E+ E+ +  TP +++  + 
Sbjct: 613 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 653


>gi|149923951|ref|ZP_01912337.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
 gi|149815183|gb|EDM74732.1| type IV pilus secretin PilQ [Plesiocystis pacifica SIR-1]
          Length = 1125

 Score =  160 bits (404), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 50/279 (17%), Positives = 95/279 (34%), Gaps = 43/279 (15%)

Query: 181  SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF------ 234
            ++ ++  L+     QV ++  I E R + L+Q+G Q      +S  + +           
Sbjct: 842  AESLVRQLDSQTP-QVLIEARIVEARTNWLRQLGIQWGFDFVASPGTGNPTGLLFPNAIG 900

Query: 235  ---------------------------------GGKFVSEGGDFSVKGVLDRFSFETVLH 261
                                              G        FS   +    +    L 
Sbjct: 901  IGGGSGSNQSPVNGLILPGAAANPNYAVDLPAVVGTGSGGALGFSFGSLSGNLNTNLRLS 960

Query: 262  ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            A E    +R ++ P +  +    A    G Q     VS+    T     +  + L  TP 
Sbjct: 961  AAENEGDVRIISAPKIVTLDNTEAQIEQGVQIPIAQVSAQGVNTR--YVNATLGLRVTPQ 1018

Query: 322  VLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            V + G + L ++ + +E           P+   + A + + +  G T V+ G+   +   
Sbjct: 1019 VTNEGAVLLEVEVQKNEADFVNTGARGDPTILTKSARSQLLITDGDTAVIGGIYTRNQAI 1078

Query: 381  LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +P  + IPI+G  F+N     + +E+ I  TP +V
Sbjct: 1079 NHSKVPWFADIPIIGWFFKNRTERDDRSEMLIFLTPRIV 1117


>gi|188026465|ref|ZP_02962178.2| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
 gi|188019786|gb|EDU57826.1| hypothetical protein PROSTU_04276 [Providencia stuartii ATCC 25827]
          Length = 348

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 109/240 (45%), Gaps = 9/240 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  L++  + QV +   I    R  L+++G +  +   S   S+    +   ++ S 
Sbjct: 114 EEWLKQLDVP-KQQVQITAHIISSSRTALQELGLEWGMLSGSPNNSRYQRYN---RYDSS 169

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G F++  + +      + +ALE+   +  +A P L A     AS   G +     V+S+
Sbjct: 170 SGQFNLLRLGEGLLELKL-NALEKENLLSIIASPRLMASHKHPASIQQGSEIP--YVTST 226

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTT 359
              T V   D  + +  TPT+     + L ++   + P   +   D    +   ++  T+
Sbjct: 227 EKKTHVQFKDAVLGMEVTPTLSRGDHVELLLKISHNSPDKAITTSDEHYLAINKQEIATS 286

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V + +  T++L G+ +   ++ + G+P LS IP+LG LF N+  + +   + +  TP L+
Sbjct: 287 VTIRNNETLILGGIFQQKQEKTETGLPFLSNIPLLGKLFTNTGEHIDRRVLVVFITPKLI 346


>gi|83859119|ref|ZP_00952640.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852566|gb|EAP90419.1| general secretion pathway protein D [Oceanicaulis alexandrii
           HTCC2633]
          Length = 661

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 62/289 (21%), Positives = 110/289 (38%), Gaps = 48/289 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---- 237
           ++V++ L++    QV ++  + E+     + +G Q  + G     +      +G      
Sbjct: 321 EQVISRLDVRRP-QVQVEAIVVEISDQTARDLGVQFLLAGDGDDATPFAYTRYGSTRQPD 379

Query: 238 -----------FVSEGGDFSVKGV--------------------------LDRFSFETVL 260
                       +S G   +                               D   F  ++
Sbjct: 380 LLALTGALLTGGLSSGDGETTSSTDVNLRNLALSSLVNSRGGSFGFGGELNDGSLFGVIV 439

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVV 315
           +AL+  T    L++P L  +  + A+   G +    T      ++S     +     GV 
Sbjct: 440 NALDSDTDSNVLSKPQLMVLDNEEANLMVGQEIPITTGETLGSNNSNPFRQIERESVGVQ 499

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLL 374
           L+  P +     I L+I+ EVS     V+A  +      RK +TTV    G  IVL GL+
Sbjct: 500 LYVRPQINDGDAIRLQIRQEVSSVAGPVSADFVELITNQRKIETTVLADDGEIIVLGGLI 559

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           + D Q+ + G+P LS+IP  G LFRN   +     + +   P +V+  A
Sbjct: 560 ETDEQEAESGVPGLSRIPGAGRLFRNDSRSTTRRNLMVFIRPTIVRDAA 608


>gi|190572747|ref|YP_001970592.1| putative general secretion pathway protein D [Stenotrophomonas
           maltophilia K279a]
 gi|190010669|emb|CAQ44278.1| putative general secretion pathway protein D precursor
           [Stenotrophomonas maltophilia K279a]
          Length = 733

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 67/276 (24%), Positives = 111/276 (40%), Gaps = 25/276 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
           +V+  L++    QV ++  +AEV  D   + G       + +G + +             
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVSLDGDLKYGVNWFFDNAVAGRALTGALGGVTLPAAAG 504

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             +     +  G   +       +   V+ AL++ T +R L  P++   +   A+   G 
Sbjct: 505 GSWSSFAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564

Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
           +    T + +TG      +SV   D GV+L   P V   G + L I  EVS         
Sbjct: 565 KVPINTTTVNTGIGTGTYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPDNC 624

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P    +K  T   + SG TI+LAGL+ D       GIP LS+IP++GALF  
Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSRIPVVGALFGQ 684

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
                  +E+ +  TP +V+    ++     D YS 
Sbjct: 685 KSRTSRRSEVIVLLTPSIVR--NGQEARNLTDEYSQ 718


>gi|220936186|ref|YP_002515085.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997496|gb|ACL74098.1| type IV pilus secretin PilQ [Thioalkalivibrio sp. HL-EbGR7]
          Length = 711

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 53/264 (20%), Positives = 103/264 (39%), Gaps = 26/264 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-- 240
           ++++ L+I    QV ++  I     D  + +G +  +TG                  +  
Sbjct: 448 RLIDRLDIP-VQQVLIETRIVIASDDFARDLGARFGVTGVGQTGRTQTFTTGNLSGTTEM 506

Query: 241 ---------------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                  G  ++  +      +  + AL+       ++ P +  
Sbjct: 507 IRGDELSLLNRLNTNLPVISPSAGSIALSILRPDVLLDLEISALQVEGRGEIISSPRVIT 566

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            +GQ+A    G +  Y+  +SS GAT+V   +  +    TP +   G I L I+     P
Sbjct: 567 ANGQTARIQQGERIPYQEATSS-GATAVQFIEAVLATEVTPQITPNGNIILNIRVNKDNP 625

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
              +     PS   R+ +T V + +G T+VL G+ + D  +  E +P    +P +  LFR
Sbjct: 626 -GTLVVQGTPSIETREVETQVFVRNGETVVLGGVYEIDSLETLEKVPFFGDLPGIRHLFR 684

Query: 400 NSRFNREETEIFIAATPFLVKPVA 423
            +  +  + E+ I  TP +++  A
Sbjct: 685 RTGKSTRKAELLIFVTPKVIEETA 708


>gi|319944026|ref|ZP_08018306.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
 gi|319742787|gb|EFV95194.1| type II and III secretion system protein [Lautropia mirabilis ATCC
           51599]
          Length = 837

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 95/271 (35%), Gaps = 30/271 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+     QV ++  I EV+ D + ++G Q     S  G +            S  
Sbjct: 408 GVIDQLDSR-RAQVYIESLIVEVKADTVSEMGIQWQFGTSRPGQNSVVGGTNFSSGGSNI 466

Query: 243 G---------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                                 +          +   +  ALE  T     A P L  + 
Sbjct: 467 LSVTQNPAALAAAGGLNVGVVRNGVSLFGQTFLNLGLLARALEAETNSNIRATPNLLTLD 526

Query: 282 GQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            + A    G    + T   +T          ++   D G +L   P V   G + + I  
Sbjct: 527 NEEARIIIGQNVPFVTGQYATTNNTLSSPFQTIERKDVGTMLRVRPQVSEGGTVKMEIAQ 586

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           E+S  V    +  +     R  D+ V +  G  +VL GL++D ++     +PLL  IP L
Sbjct: 587 EISAVVDTTQSAGI-ITNRRAIDSNVLVDDGQIVVLGGLIEDTVEGGISKVPLLGDIPGL 645

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G LFR     R +T + I   P +++     
Sbjct: 646 GRLFRYDNRKRVKTNLLIFLRPVVLRSADQA 676


>gi|307720197|ref|YP_003891337.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978290|gb|ADN08325.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 709

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 54/239 (22%), Positives = 109/239 (45%), Gaps = 18/239 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q  ++VT+A+V       +GF+++IT  ++G  K+     GG          +  V  
Sbjct: 454 PLQTLVEVTVADVDMTDTFSLGFEYAITNQNAGLVKNILNITGG-------GSGLGVVFK 506

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------T 302
               E+ ++A      +  +++P L  ++ ++ +   G Q    T   S          +
Sbjct: 507 GNHLESTINAYAEKKLLDIISKPKLLILNNKTGNINVGTQVPIITSQVSAADLGSSSQPS 566

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVE 361
              +++  + G++L+ TPT+ S G + + I   +S+      +  + P    R   TT  
Sbjct: 567 INQNISYKNTGIILNITPTINSNGVLTMNISITLSDAQLNDTSTINSPLIINRSLQTTAV 626

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + SG +I+L GL+  +  + K G+PLL  IP +G +F ++     ++E+ I   P ++K
Sbjct: 627 VQSGDSILLGGLISQNKSKSKGGVPLLKDIPWIGNMFASNSIKTTKSELIILIRPVIIK 685


>gi|212709415|ref|ZP_03317543.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
 gi|212687930|gb|EEB47458.1| hypothetical protein PROVALCAL_00454 [Providencia alcalifaciens DSM
           30120]
          Length = 344

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 49/228 (21%), Positives = 94/228 (41%), Gaps = 6/228 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV +   I    R  L+ +G +  +   S   +    + +       G        L  
Sbjct: 119 QQVQITAHIISSSRTALQALGLEWGVHNDS--ATDGHHSRYNRYSSQSGQMALNVLRLGE 176

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              E  L+ALE+   +  +A P L A     AS   G +     V++S   + V   D  
Sbjct: 177 GLLEMKLNALEKENLLSIIASPRLVASHKNPASIQQGSEIP--YVTTSEKKSHVQFKDAV 234

Query: 314 VVLHFTPTVLSPGRIGL--RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           + +  TPT+     + +  +I     +  +  N     +   ++  T+V + +  T++L 
Sbjct: 235 LGMEVTPTISRNDNVEMVLKISHNSPDTALTTNPNQHLAINKQEIATSVTIKNNNTLILG 294

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ +   ++   G+P LS+IP+LG LF N   + ++  + +  TP L+
Sbjct: 295 GIFQQKQEKTDSGVPFLSQIPLLGNLFINKTQHVDKRVLVVFITPKLI 342


>gi|254246658|ref|ZP_04939979.1| GspD [Burkholderia cenocepacia PC184]
 gi|124871434|gb|EAY63150.1| GspD [Burkholderia cenocepacia PC184]
          Length = 775

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            V++ L+     QV ++  I E+       +G Q  +         +     G       
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457

Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
                          G   S  G  S    +              +L      +    L+
Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517

Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G              + ++S    +    D G+ LH  P +   
Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577

Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + L++ TE S       NA   P++  R   +T+   +G  IVL GL++D+ Q     
Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672


>gi|94496443|ref|ZP_01303020.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
 gi|94424189|gb|EAT09213.1| type II and III secretion system protein [Sphingomonas sp. SKA58]
          Length = 726

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 58/293 (19%), Positives = 107/293 (36%), Gaps = 57/293 (19%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV--- 247
              +QV ++  I E+     K++G Q  I  + +G + +  ++     ++  G +     
Sbjct: 351 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNLLTLAGAYGANQL 410

Query: 248 ------------------------------------------------KGVLDRFSFETV 259
                                                             +     F  +
Sbjct: 411 GTTTTTVVAPDGTRTTTEVRENSDLASTLQQAAINSLQSATGAIAGLGGSIGSNGIFGAI 470

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
           ++A++  T    L+ P++  +  Q AS   G Q    T  +          +V   D G+
Sbjct: 471 INAVKSDTESNLLSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 530

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            L   P + + G I L ++ EVS     V N         R+ +TTV +  G  + L GL
Sbjct: 531 KLEVKPQINTGGAIKLFLRQEVSSVAGPVSNDNSDLIINKREIETTVTVDDGEILALGGL 590

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L D+ ++  E IPLLS IP +G LF++   +R +T + +   P +++      
Sbjct: 591 LDDNERKTIERIPLLSDIPGIGELFKSRSRSRTKTNLMVFIRPTILRSKEDAQ 643


>gi|289668624|ref|ZP_06489699.1| general secretion pathway protein D [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 760

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 72/304 (23%), Positives = 117/304 (38%), Gaps = 32/304 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  IAEV        G     
Sbjct: 443 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELSYGVNWYF 501

Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
             + + P  +  +       + G               V       +   V++AL+R T 
Sbjct: 502 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGSVTGNGVGWTFLGKNAAAVINALDRVTN 561

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
           +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V
Sbjct: 562 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 621

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
              G + L I  EVS P     A    +               R+  T   + SG T++L
Sbjct: 622 TKDGMVFLDIVQEVSTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 681

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+ D       G+P LSK+P++GALF     +    E+ +  TP +V+    ++    
Sbjct: 682 AGLIDDSTSDGSAGVPFLSKLPVVGALFGQKTRDNTRREVIVLITPSIVR--NPQEARNL 739

Query: 431 DDHY 434
            D Y
Sbjct: 740 TDEY 743


>gi|238751132|ref|ZP_04612627.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
 gi|238710610|gb|EEQ02833.1| Protein transporter HofQ [Yersinia rohdei ATCC 43380]
          Length = 376

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 68/291 (23%), Positives = 117/291 (40%), Gaps = 10/291 (3%)

Query: 137 RVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
             E V+D++ L  G V +   S    + + T L +      A   S  V   L +    Q
Sbjct: 90  DAEQVADSLDLAEGGVLSPLGSVVVDKRTNTLLIRDTPASLALLQSWLVEMDLPL---QQ 146

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVLD 252
           V L   I  + R+ L+++G +  +  +    S     F  +           F+V  +  
Sbjct: 147 VQLAAHIVTISRENLQELGVRWGMGEAKQNSSLRMNDFNVNLPLPNRVISAGFNVARIGG 206

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           R     +  ALE+   I  +A P L A   Q+AS   G    Y       G ++V   + 
Sbjct: 207 RLLELEL-SALEQENQIDIIASPHLVASHQQTASIKQGSDIPYTVSKGKKGISTVEFKEA 265

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVL 370
            + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TIVL
Sbjct: 266 VLGMEVTPKILRNGKITLDLKISQNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETIVL 325

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            G+ +    Q    +P+L+ IP LG LF+     +   E+ I  TP L+  
Sbjct: 326 GGIFQQKSTQGVHKVPVLADIPWLGVLFKQDAQQQSRRELVIFITPKLINA 376


>gi|87309468|ref|ZP_01091603.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
 gi|87287776|gb|EAQ79675.1| Type IV pilin multimeric outer membrane protein [Blastopirellula
           marina DSM 3645]
          Length = 719

 Score =  159 bits (403), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 96/245 (39%), Gaps = 7/245 (2%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV ++ TI  V+ D    +G         +                +  D  +K  
Sbjct: 337 RRPLQVAIEATILSVKLDDSLNLGVNFEALIDKNKVRLVSGFPLSALDQIKLTDGGLKFG 396

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--HLYKTVSSSTGATSVT 308
               S    + ALE       +A P L  ++ Q A    G Q  ++  TV+ +    SV 
Sbjct: 397 FLDSSLGVFIDALESFGDTSVIASPQLLVLNKQRAEILIGEQKGYISTTVTETASTQSVE 456

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGT 367
             + G  L   P +   G + L +  E+S+  + V     +P+  V +  T V  P G T
Sbjct: 457 FLEIGTQLRLRPFITDDGMVRLEVHPEISDGDVKVEGQFTLPNKIVTQVTTNVICPDGRT 516

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423
           I++ GL+K D+++    IP L  IPILG  FR  +      E+ +  TP +V     P  
Sbjct: 517 IIIGGLIKSDLRKKGSQIPYLGSIPILGPAFRQKQETTVRDELIVLLTPRIVDAAHIPSD 576

Query: 424 MRDLS 428
             +L 
Sbjct: 577 GEELR 581


>gi|269964603|ref|ZP_06178842.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
 gi|269830730|gb|EEZ84950.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
          Length = 286

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 90/208 (43%), Gaps = 6/208 (2%)

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
           +  G  +    + + D+     +  G       +    +  ++ A+   +    L+ P++
Sbjct: 18  NSNGERTPYDVTESGDYSTLASALSGVNGAAMSIVMGDWTALISAVASDSNSNILSSPSI 77

Query: 278 TAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           T +    ASF  G +    T      ++     +V   + G+ L   P +     + L I
Sbjct: 78  TVMDNGEASFIVGEEVPVITGSTAGSNNDNPFQTVDRKEVGIKLKVVPQINEGDSVQLNI 137

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + EVS  +    A D+  +  R+ +T+V +  G  +VL GL+ +   + +  +PLL  IP
Sbjct: 138 EQEVSNVLGANGAVDV-RFAKRQLNTSVMIQDGQMLVLGGLVDERALESESKVPLLGDIP 196

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           +LG LF+++    E+  + +   P +++
Sbjct: 197 VLGHLFKSTSTQTEKRNLMVFIKPTIIR 224


>gi|261344685|ref|ZP_05972329.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
 gi|282567605|gb|EFB73140.1| protein transport protein HofQ [Providencia rustigianii DSM 4541]
          Length = 346

 Score =  159 bits (402), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 97/228 (42%), Gaps = 6/228 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV +   I    R  L+ +G +  + G     +    + +       G        L  
Sbjct: 121 QQVQITAHIVSSTRTALQALGLEWGMLGEM--ATNPHHSRYNRYNTEPGKVALNILKLGD 178

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              E  L ALE+A  +  +A P L A   + AS   G +     V+++   + V   D  
Sbjct: 179 GLLEMKLSALEKANLLSIIASPRLVASHQKPASIQQGTEIP--YVTNTDKKSHVQFKDAV 236

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLA 371
           + +  TPT+    ++ + ++   + P   +        S   ++  T+V + +  T++L 
Sbjct: 237 LGMEVTPTISRDNKVEMVLKISHNSPDTAITTSQNHHLSINKQEIATSVTIKNNDTLILG 296

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G+ +   ++ + GIP LS++P+LG LF NS  + +   + +  TP L+
Sbjct: 297 GIFQQKQEKTEAGIPFLSQLPLLGNLFTNSFQHIDRRVLIVFITPKLI 344


>gi|71066434|ref|YP_265161.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
 gi|71039419|gb|AAZ19727.1| fimbrial assembly protein PilQ [Psychrobacter arcticus 273-4]
          Length = 756

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 52/240 (21%), Positives = 95/240 (39%), Gaps = 8/240 (3%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFV 239
           K++  ++I    QV ++  I        K++G +  I            S   +      
Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSASDSFSKELGVRWGILFDGKPDDNRLTSSGLNVDLGIS 572

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           +          +     +  L A++       ++ P +     Q+A  +SG Q  Y+   
Sbjct: 573 NPASVAFGILKVSDVMLDLELLAMQADNRGEVISTPKILTSDKQTAKISSGTQIPYQEA- 631

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           S++GAT+ +  +  + L  TP +   G+IGL++      P I  N     +       T 
Sbjct: 632 SASGATTTSFKEAALSLEATPNITPDGKIGLQLLITNGTPTIINNQV---AIAEDSISTN 688

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G TIVL G+ K+      + +P L  +P +G  FR    +  + E+ I  TP L+
Sbjct: 689 VIVEDGQTIVLGGVFKNRTNNGVDKVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 748


>gi|254517138|ref|ZP_05129196.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
 gi|219674643|gb|EED31011.1| general secretion pathway protein D [gamma proteobacterium NOR5-3]
          Length = 770

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 106/275 (38%), Gaps = 6/275 (2%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G         R V   E        +       K+ +  L++    QV ++ +I EV+ 
Sbjct: 459 SGTGTNELVDVRVVADEENNALMVYADGKQYGIVKEALKQLDVVAT-QVIIEASIMEVQL 517

Query: 208 DILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
               + G + +      S          G    +    FS            VL+AL   
Sbjct: 518 IDELRYGLEWTFKNGLGSNYDGLGTLAAGAAGPAAVAGFSYTVSNSVGDISAVLNALSEE 577

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           + I  ++ P++  +    A  + G Q          +      ++T  D GV L   P+V
Sbjct: 578 SLINVISTPSVMVLDNHVAFISVGDQVPVLQGQTITNGGNSVQNITYRDTGVQLSVRPSV 637

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + G + + I+  V +     +A    ++  R  ++ V + S  ++VL GL++++     
Sbjct: 638 NAGGLVTMDIEQSVIDVGAIDSATGQRAFLDRTINSRVAVRSSESVVLGGLIRENSSLGD 697

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            G+P+L +IP+ G+LF  +  +   TE+ +  TP 
Sbjct: 698 SGVPILREIPLFGSLFGTTTTDSRRTELLVIITPR 732


>gi|294667368|ref|ZP_06732586.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292602809|gb|EFF46242.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 648

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 102/276 (36%), Gaps = 46/276 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
              DQV ++  I        + +G +  ITG+                            
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTAAQRANEIA 426

Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G S + A+              G   S     +   +   F+ +  L A++       
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486

Query: 272 LAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
           ++ P +   + +      G +     +    +      +V   +  + L  TPT+ +  R
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGTGGQSQANVQFKEVLLELKVTPTITNDNR 546

Query: 328 IGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + L +  +  E    +N    G +P    R+ +T V +  G T+V+ G+ + + ++    
Sbjct: 547 VFLNMNVKKDEVARFINLPLYGTVPEINRREVNTAVLVGDGETVVIGGVYEFNDRESVAK 606

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P L  IP LG LF+    ++E+ E+ +  TP +++
Sbjct: 607 VPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLR 642


>gi|170731436|ref|YP_001763383.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
 gi|169814678|gb|ACA89261.1| general secretion pathway protein D [Burkholderia cenocepacia
           MC0-3]
          Length = 780

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 55/275 (20%), Positives = 95/275 (34%), Gaps = 39/275 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            V++ L+     QV ++  I E+       +G Q  +         +     G       
Sbjct: 399 SVIDQLDAR-RAQVYIEALIVELNSTTQGNLGIQWQVASGQFLGGTNLNPGLGLGNSIIN 457

Query: 236 ---------------GKFVSEGGDFSVKGVLDRF-------SFETVLHALERATAIRTLA 273
                          G   S  G  S    +              +L      +    L+
Sbjct: 458 LTAGGVANAAGGITGGGLASNLGQLSQGLNIGWLHNMFGVQGLGALLQYFAGVSDANVLS 517

Query: 274 EPTLTAISGQSASFTSGGQHLY--------KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            P L  +  + A    G              + ++S    +    D G+ LH  P +   
Sbjct: 518 TPNLITLDNEEAKIVVGQNVPIATGSYSNLTSGTTSNAFNTYDRRDVGLTLHVKPQITDG 577

Query: 326 GRIGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           G + L++ TE S       NA   P++  R   +T+   +G  IVL GL++D+ Q     
Sbjct: 578 GILKLQLYTEDSAVVSGTTNAQTGPTFTKRSIQSTILADNGEIIVLGGLMQDNYQVSNSK 637

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP +G LFR+    R +T + +   P ++
Sbjct: 638 VPLLGDIPWIGQLFRSESKVRAKTNLMVFLRPVII 672


>gi|94269217|ref|ZP_01291402.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93451297|gb|EAT02179.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 557

 Score =  159 bits (402), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 70/325 (21%), Positives = 126/325 (38%), Gaps = 51/325 (15%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202
           ++ G  R  +D  +A ++     S     +      ++V   ++ L      QV L+  I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265

Query: 203 AEVRRDILKQIGFQHSITGSS-----------------------SGPSKSFAADF----- 234
            EV  D   Q G       +S                       +G + + +AD      
Sbjct: 266 IEVELDEAFQSGINWGKLATSGRDTLKLGQIGGGTVLDDGVSAIAGNTGNLSADNYNPID 325

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
           G    + GG F++   LD  SF   +  L+    +  L+ P +   + Q A    G    
Sbjct: 326 GTTTSAFGGVFTLATSLDHSSFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEY 385

Query: 295 YKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           + T  S +  T            +T    G+ L  TPT+     + L I+  VS+     
Sbjct: 386 FVTDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQT 445

Query: 344 NAGDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            +  +              R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++
Sbjct: 446 KSFTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLV 505

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LFR  R+++ +TE+ I   P +V
Sbjct: 506 GNLFRQQRWSQRKTELVILLRPVVV 530


>gi|46199319|ref|YP_004986.1| competence protein pilQ [Thermus thermophilus HB27]
 gi|17226359|gb|AAL37751.1|AF436067_5 putative secretin PilQ [Thermus thermophilus HB27]
 gi|46196944|gb|AAS81359.1| competence protein pilQ [Thermus thermophilus HB27]
          Length = 757

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 58/234 (24%), Positives = 104/234 (44%), Gaps = 10/234 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+V I EV+ ++ + +G + +     +  +    +     F S          L  
Sbjct: 532 PQVNLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAA 584

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +    L AL++    R L +   T ++ Q+A   SG     + V +          D G
Sbjct: 585 LNIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVG 642

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAG 372
           +++  TP + + G+I L I+ EVS  V      GD+  +  +   TT+ +  G T+VL G
Sbjct: 643 LIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGG 702

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L   +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A  +
Sbjct: 703 LTSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKEAASAN 756


>gi|294627095|ref|ZP_06705683.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598528|gb|EFF42677.1| fimbrial assembly protein [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 649

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
              DQV ++  I        + +G +  ITG+                            
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426

Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G S + A+              G   S     +   +   F+ +  L A++       
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486

Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           ++ P +   + +      G +           + S    +V   +  + L  TPT+ +  
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546

Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +     EV+  +I    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +P L  IP LG LF+    ++E+ E+ +  TP +++  +  
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648


>gi|325924171|ref|ZP_08185732.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325545346|gb|EGD16639.1| General secretion pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 758

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/299 (24%), Positives = 123/299 (41%), Gaps = 31/299 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET       +  A SS + V+  L++    QV ++  IAEV      + G     
Sbjct: 445 VSAVAETNTLLVRASAQAWSSIRDVIEKLDV-MPMQVHIEAQIAEVTLTGQLEYGVNWYF 503

Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
             + + P  +  +   G   + G            +  +       +   ++ AL+R T 
Sbjct: 504 ENAVNAPINADGSGGAGLAPAVGRGIWGDVSGSVTNNGLAWTFLGKNAAAIISALDRVTN 563

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
           +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V
Sbjct: 564 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 623

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
              G + L I  EVS P     A    +               R+  T   + +G TI+L
Sbjct: 624 TKDGMVFLDIVQEVSTPGARPAACTAAATTTVNSAACNVDINTRRVKTEAAVQNGDTIML 683

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           AGL+ D      +G+P LSK+P++G+LF     NR   E+ +  TP +V+ P   RDL+
Sbjct: 684 AGLIDDTTSDGSDGLPFLSKLPVVGSLFGRKTQNRNRREVIVLITPSIVRNPQDARDLT 742


>gi|78049053|ref|YP_365228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|78037483|emb|CAJ25228.1| fimbrial assembly protein [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 649

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 103/282 (36%), Gaps = 47/282 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS---------------------------- 222
              DQV ++  I        + +G +  ITG+                            
Sbjct: 367 RPVDQVLIESRIVIATDTFARDLGARFGITGATGRGILSGALESNVNFQNTSAQRANEIA 426

Query: 223 SSGPSKSFAA-----------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           ++G S + A+              G   S     +   +   F+ +  L A++       
Sbjct: 427 NTGTSTTLASHLFPSGLNVDLGASGFTNSRAAGLAYTLLGSNFNLDIELSAMQEEGRGEV 486

Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           ++ P +   + +      G +           + S    +V   +  + L  TPT+ +  
Sbjct: 487 VSNPRIVTANQREGVIKQGREIGYVTISGGGAAGSAAQANVQFKEVLLELKVTPTITNDN 546

Query: 327 RIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +     EV+  +I    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 547 RVFLNMNVKKDEVARFIILEGYGTVPEINRREVNTAVLVGDGETVVIGGVYEFTDRESVS 606

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +P L  IP LG LF+    ++E+ E+ +  TP +++  +  
Sbjct: 607 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAN 648


>gi|153870600|ref|ZP_01999967.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
 gi|152072935|gb|EDN70034.1| MSHA biogenesis protein MshL [Beggiatoa sp. PS]
          Length = 494

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/241 (21%), Positives = 99/241 (41%), Gaps = 22/241 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV ++ TIAEV+ +   Q G            +++      G        +S       
Sbjct: 250 RQVLIEATIAEVQLNDQYQAGIDWQRIDGDFNYTQALTGGNLGNAPFYSFGYSNVASRLG 309

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TG 303
            +    +  LE+  +++ L+ P + A++ Q+A        +Y T              T 
Sbjct: 310 -NISATVRLLEQFGSVKVLSSPKIMALNNQTAILKVVDNIIYFTTEVEITETDTRTRETF 368

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYR 352
            T + T   G+V+  TP +     + L I+  +S                     +P  +
Sbjct: 369 ETEINTVPVGLVMSVTPQISENNVVMLNIRPTISRIINFKVDPNPALAAAGTVNQIPEIQ 428

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           VR+ +T +++  G   V+ GL++D   Q+K+G+P+LS++P++G  F       E+TE+ I
Sbjct: 429 VREIETILKINHGDIGVIGGLMQDTTNQIKKGVPVLSQLPLVGDFFSYRDDQYEKTELVI 488

Query: 413 A 413
            
Sbjct: 489 F 489


>gi|294666157|ref|ZP_06731413.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604073|gb|EFF47468.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 763

 Score =  159 bits (402), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 72/308 (23%), Positives = 121/308 (39%), Gaps = 34/308 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV        G     
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-------------SFETVLHALERA 266
             + +  S S    FGG  +      ++ G +                +   ++ AL+  
Sbjct: 507 ENAVNAASDSTTYGFGGAGLPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTV 566

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTP 320
           + +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P
Sbjct: 567 SNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRP 626

Query: 321 TVLSPGRIGLRIQTEVSEPVIG------------VNAGDMPSYRVRKADTTVELPSGGTI 368
            V   G + L I  E+S P                +A        R+  T   + SG T+
Sbjct: 627 RVTKDGMVFLDIVQEISTPGARPAACTAETTTTVNSAACNVDINTRRVKTEAAVQSGDTM 686

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +LAGL+ D       G+P LSK+PI+GALF     N +  E+ +  TP +V+    ++  
Sbjct: 687 MLAGLIDDSTTDGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESR 744

Query: 429 RPDDHYSV 436
              D Y+ 
Sbjct: 745 DLTDEYAR 752


>gi|157163858|ref|YP_001466818.1| PP family ATPase [Campylobacter concisus 13826]
 gi|157101371|gb|EAT98651.2| type II and III secretion system protein [Campylobacter concisus
           13826]
          Length = 508

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 112/288 (38%), Gaps = 31/288 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------ITGSSS 224
                     +K +  +    + QV + V+I  V  +   + G   S           + 
Sbjct: 207 TATPSQLKRVEKYIAEMQRRLKKQVIIDVSIIAVDLNNEYKQGVDWSKFELGFNSYIGNP 266

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLD---RFSFETVLHALERATAIRTLAEPTLTAIS 281
           G S S  A +  K  S    F     +     FS + +++ LE     + ++ P +T ++
Sbjct: 267 GSSTSSYASWTNKGNSLSDGFGRTLNIAANLNFSLDGMINFLETNGKTKVVSSPKVTTLN 326

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVT------------THDYGVVLHFTPTVLSPGRIG 329
            Q A  + G    Y+ +  +   ++              +   G++L+  P V    +I 
Sbjct: 327 NQQALISVGDNINYRVMEETDNGSNNNNNNRLTTTYKQYSVFIGILLNLLPEVSDNNKIM 386

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKA---------DTTVELPSGGTIVLAGLLKDDIQQ 380
           LRI   +S      +     +  +R+           T V++ SG TI+L GL+     +
Sbjct: 387 LRINPSLSSFKYAEDDTRSQNTAIREIAPDTVQKKLSTVVQVNSGDTIILGGLIGQTKDK 446

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
               +PLL+ IP++G++F+++R     TE+    TP +V     + + 
Sbjct: 447 QNTAVPLLADIPLIGSVFKSTRDGVRTTELIFVITPRVVDLEDAKPVQ 494


>gi|330813196|ref|YP_004357435.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486291|gb|AEA80696.1| hypothetical protein SAR11G3_00221 [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 518

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 100/295 (33%), Gaps = 32/295 (10%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            +     +  E   T        +       KV+  +++  + QV ++  I E      +
Sbjct: 229 DSSYSPIQITEEITTRSIIVRGKEKDLDVVDKVIKEIDVRTK-QVLIEAFIVEADSTFEQ 287

Query: 212 QIGFQHSITGS----------------------SSGPSKSFAADFGGKFV-----SEGGD 244
            +G +     S                        GPS +                    
Sbjct: 288 ALGTRLGGAYSAKKDYKIGGIGASSMASVTPPAGPGPSAAAIGGVTDALTDFAAVGATSG 347

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             +         +  + ALE     +T++ P +  +  Q A+ T G +  Y+   S    
Sbjct: 348 IGILRQTGSAVLKAEITALEVLGKGKTISNPKVFTLDNQIATITQGEEISYQATGSEGAD 407

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T  +  +  + L  TP+++  G + L I   V+   +       PS    +  T + +  
Sbjct: 408 T--SFKEAALKLTVTPSIIGDGNVLLEIM--VNNNTVNRANAGEPSINKMEISTKLLVAD 463

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +V+ G+ K+ +   K   P +  +P+LG LF+    + +  E+ I   P ++
Sbjct: 464 GDIVVIGGIKKNKVFSSKSQTPGVGNLPVLGNLFKGKSKSDKLDELLIFIAPRIL 518


>gi|87200666|ref|YP_497923.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87136347|gb|ABD27089.1| type II and III secretion system protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 748

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 53/286 (18%), Positives = 104/286 (36%), Gaps = 53/286 (18%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-------- 245
           +QV ++  I E+  D+ K++G Q    G +   + +  ++     +   G          
Sbjct: 387 EQVLVEAIIVEISNDVAKELGVQMLFGGKNMPFAVTNYSNSSPNIIDIAGGLLADNLNQT 446

Query: 246 --------------------------------------SVKGVLDRFSFETVLHALERAT 267
                                                  +  +        +++A++   
Sbjct: 447 TTVVNGDTVTTTTNSTAGDLLRENAASKLLSARGAYTGFLTELSKDTYLGAIINAVQTDK 506

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVTTHDYGVVLHFTPT 321
               L+ P +T  +   AS   G +    T  +      S    ++   + G+ L  TP 
Sbjct: 507 NSNILSTPHITTNNNVPASILFGQEIPVSTGEALSGGNFSDTFRTIQRQNVGIELDVTPQ 566

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + +   I L ++ EVS     V+   +      R+  TTV +     + L GLL D+ Q+
Sbjct: 567 INASNMIRLDLRQEVSSIAGTVSKTSNELIVNKREIKTTVTVGDREIVALGGLLDDNEQR 626

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             + +PLL  IPILG  F++   +R +T + +   P +++  A R 
Sbjct: 627 TLQKVPLLGDIPILGEAFKSRARSRVKTNLMVFIRPTILRNAADRQ 672


>gi|103485810|ref|YP_615371.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
 gi|98975887|gb|ABF52038.1| type II and III secretion system protein [Sphingopyxis alaskensis
           RB2256]
          Length = 732

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 74/524 (14%), Positives = 157/524 (29%), Gaps = 100/524 (19%)

Query: 3   YLQRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----V 57
              R    + ++  L     +   L   + AN+ V+      I + + ++  +++     
Sbjct: 125 IRLRHIDAVAAVETLRPLVSAQGSLTANRNANSLVVADFADNIRRIRSLAASIDRDSSTS 184

Query: 58  IILQVPVDVQD--------------------VLVSDPTKADVVVHSPRTMYLF------- 90
            I+ +                          V +     ++ +        +        
Sbjct: 185 QIVTLKNAGAREIAAALQALVPAAGEGARAPVAIVPIDSSNAIALRGDQALVTRFVAMAN 244

Query: 91  ---GKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
               K  G   + +           L  L +      +   R  +  ++           
Sbjct: 245 ELDAKAAGGTELRVYWLEHANAETLLPTLQQLIGGGSDPVQRAGLPPASSSSSGGDGNAA 304

Query: 147 LHGMVRTIQDSQRAV---------ELSETFLSQSGRNQYANSSSKKVMNLLNI---AGED 194
                     +              +   +   +     ANS  ++++  L     A   
Sbjct: 305 PAAAAPASSSTGAGGSGSISTRGPAIVTRYEGANAIIVAANSEVQRMLGELIRQLDARRQ 364

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD---------- 244
           QV ++  + E+  D  K++G Q  + G +     +  ++     ++ GG           
Sbjct: 365 QVLVEAIVVEIGDDAAKRLGVQFLLGGKNIPFVATSYSNASPNILTLGGAYASTRISEET 424

Query: 245 ------------------------------------FSVKGVLDRFSFETVLHALERATA 268
                                                    +     F  +++A++  T 
Sbjct: 425 TTTDGTTVVTQTTSALGDALQEAAAAQLLSATGGFAGFAGDIGKNTIFGAIINAVKSDTT 484

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPTVL 323
              LA P +  +  Q A F  G      T             +V   + G+ L  TP V 
Sbjct: 485 SNLLATPHIVTLDNQPAKFLVGQDVPITTGEQLGDNFENAFRTVQREEVGIKLEVTPQVN 544

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G + + ++ EVS     V++ +       R  +T + +  G  + + GLL DD ++  
Sbjct: 545 GAGEVKMFLRQEVSSVAGPVSSRNSDLILNKRAFETVLTVDDGEILAIGGLLNDDERRTI 604

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           E IPLLS IP++G LF++    R +T + +   P ++K      
Sbjct: 605 ERIPLLSDIPLIGELFKSRSRTRAKTNLMVFIRPTILKSREDNA 648


>gi|77163786|ref|YP_342311.1| fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|254435512|ref|ZP_05049019.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
 gi|76882100|gb|ABA56781.1| Fimbrial assembly protein pilQ precursor [Nitrosococcus oceani ATCC
           19707]
 gi|207088623|gb|EDZ65895.1| type IV pilus secretin PilQ subfamily, putative [Nitrosococcus
           oceani AFC27]
          Length = 699

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 56/273 (20%), Positives = 102/273 (37%), Gaps = 31/273 (11%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
           ++ +K++  L+I    QV ++  +     D  + +G +  ++G          A   G  
Sbjct: 430 AALRKLVASLDIPVR-QVLIESRVVIASSDFSRDLGVRFGLSGRGDTSGTFDQATTSGSL 488

Query: 239 VSEGGDFS--------------VKGVLDRFSFETVLHAL-------------ERATAIRT 271
                  +                   D       L  L             +       
Sbjct: 489 NGTTQIINRETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEV 548

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +   + + A    G +  Y+   SS+GATSV+     + L  TP +    RI + 
Sbjct: 549 ISNPRVITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLTVTPQITPDDRIIMD 607

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +   V++  +G     +PS   RK  T V + +G T+VL G+ + +  +    IP L  +
Sbjct: 608 LG--VTKDSVGKVFNGVPSINTRKVATQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDL 665

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           P  G LFR+      + E+ I  TP ++K  A 
Sbjct: 666 PYAGILFRDKSEFNNKRELLIFVTPKIIKEGAR 698


>gi|325925811|ref|ZP_08187183.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
 gi|325543797|gb|EGD15208.1| Type II secretory pathway protein D [Xanthomonas perforans 91-118]
          Length = 692

 Score =  159 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/441 (18%), Positives = 155/441 (35%), Gaps = 49/441 (11%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 234 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 293

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   S       +          V    +       +     +   V+  L++
Sbjct: 294 TRSTAMDVAAASGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
              +QV ++  + E+     K++G Q  + G +       ++   A  G   ++     +
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 412

Query: 247 VKGVLDRFS-------------------------------FETVLHALERATAIRTLAEP 275
             G  D  S                               F  ++ A++  T    L+ P
Sbjct: 413 RSGNADDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 533 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVE-----DDAKAF 443
            +P LGALFR+   NR++T + +   P +++     + ++ P  +Y  E      D +A 
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTVIRDAADAQRMTAPRYNYLRERQLADGDPEAA 652

Query: 444 FFNRVNKIYGPKEASEVEGQN 464
               V      +      G +
Sbjct: 653 LDALVRDYLRAQPPQLPAGPS 673


>gi|301165498|emb|CBW25069.1| putative pilus assembly protein [Bacteriovorax marinus SJ]
          Length = 609

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 127/359 (35%), Gaps = 34/359 (9%)

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
           L  K  G   +I       +     I  ++        + +        +   +   ++ 
Sbjct: 246 LVAKKNGVILMITTFEKAAEEQKKAIEQKKLTEKEVPLVTKVFP-----ISYATTKELIE 300

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
            +   I +     E   T               KK++++L+     QV ++  I EV  +
Sbjct: 301 VLNNYITERGTLNEDVRTNSLIVKDTADTIERIKKIVDVLDTQTP-QVLIESKIVEVNEN 359

Query: 209 ILKQIGFQHSIT-----------------------GSSSGPSKSFAADFGGKFVSEGG-D 244
             K+IG Q+ +                        G+++GP  SF++       +     
Sbjct: 360 YRKEIGLQNGVNFGYDPIGQIGSANPTVVGSDVLPGTNAGPGFSFSSAPSSGDGARSLFG 419

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +V       +    L  LE  +  + +A P +   + + A  ++     +    S+ G 
Sbjct: 420 LTVTRFNRLLNLSFTLQLLETESKGKIVASPKVITQNKKKAVISTKETTSFSKSLSTNGQ 479

Query: 305 TS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                    +  + L  TP V + G I L +     +     +A   P  + R+  T V 
Sbjct: 480 AQEITFEEAEASLSLEVTPQVTNEGSISLELDLLKQQFGTRPSAAAPPDKQERRVTTNVL 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN-SRFNREETEIFIAATPFLV 419
           + +G TIV+ G+   + ++   G+P L  IP++G LFR        + E+ I  TP +V
Sbjct: 540 VDNGSTIVIGGVYNYEKRESHSGVPFLKDIPLVGWLFRTPYAPEVIKQELLIFLTPRIV 598


>gi|296105083|ref|YP_003615229.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
 gi|295059542|gb|ADF64280.1| outer membrane porin HofQ [Enterobacter cloacae subsp. cloacae ATCC
           13047]
          Length = 213

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 57/200 (28%), Positives = 94/200 (47%), Gaps = 3/200 (1%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
              G   +  +D      +    F++ G ++    +  L ALE+   +  +A P L A  
Sbjct: 12  GKVGQMTTLGSDLSVASATSHVGFNI-GRINGRLLDLELSALEQKQQVDIIASPRLLASH 70

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-- 339
            Q AS   G +  Y+  S  +GATSV   +  + +  TP VL  GR+ L++    + P  
Sbjct: 71  MQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPVVLPGGRVRLKLHISENMPGQ 130

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V+    G+  +   ++ +T VE+ SG T+ L G+     +   + +P L KIP LG LFR
Sbjct: 131 VLQQADGETLAIDKQEIETQVEVKSGETLALGGIFSQKNKTGSDSVPGLGKIPWLGQLFR 190

Query: 400 NSRFNREETEIFIAATPFLV 419
           +   + E  E+ +  TP LV
Sbjct: 191 HDGKDNERRELVVFITPRLV 210


>gi|146339226|ref|YP_001204274.1| putative general secretion pathway protein D signal peptide
           [Bradyrhizobium sp. ORS278]
 gi|146192032|emb|CAL76037.1| Putative general secretion pathway protein D; putative signal
           peptide [Bradyrhizobium sp. ORS278]
          Length = 778

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 67/252 (26%), Positives = 116/252 (46%), Gaps = 22/252 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFSVK 248
             + QV ++ TIAEV      Q G Q  I     G  P      D     ++  G+  + 
Sbjct: 493 RPQRQVAIEATIAEVTLTDDLQFGVQSYIMSRDLGLKPDTGSFGDAASTALATAGNVVLN 552

Query: 249 GVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             +  F+F          +L AL   T ++ L+ P+L  I  Q A+   G +   +T ++
Sbjct: 553 RAIPGFNFLVGSATTPRLILSALHAVTDVKVLSNPSLVVIDNQVATLQVGNEIPIQTGTA 612

Query: 301 S------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------ 348
           +      T A++      G++L   P + + G + L ++ E+S  + G N G+       
Sbjct: 613 TVLTGNNTVASTTDYRSTGIILRVVPRINANGNVRLDVEQEISNALNGTNGGNGATNSLT 672

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   RK  ++V + SG T++LAGL+ D   + + GIP + +IP +G LF  S  N + T
Sbjct: 673 PTVATRKLRSSVAVASGQTVLLAGLISDTQNRTRNGIPGIDQIPGIGDLFSQSGNNVQRT 732

Query: 409 EIFIAATPFLVK 420
           E+ I   P +++
Sbjct: 733 ELIIFIRPQIIR 744


>gi|78064721|ref|YP_367490.1| type II and III secretion system protein [Burkholderia sp. 383]
 gi|77965466|gb|ABB06846.1| type II and III secretion system protein [Burkholderia sp. 383]
          Length = 781

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 55/306 (17%), Positives = 104/306 (33%), Gaps = 39/306 (12%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
              Q        + T       +     + + V++ L+     QV ++  I E+  +   
Sbjct: 369 DDNQQGGMIQADAATNSLIITASDPVYRNLRSVIDQLDAR-RAQVYIEALIVELASNTQG 427

Query: 212 QIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDFSVKGV----------- 250
            +G Q  +         +     G          G   +  G  +  G+           
Sbjct: 428 NLGIQWQVASGQFLGGTNLNPTAGLGNSIINLTAGGVTNAAGGITGGGLAANLGSLTQGL 487

Query: 251 --------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------- 295
                           +L      +    L+ P L  +  + A    G            
Sbjct: 488 NIGWLHNMFGVQGLGALLQYFAGVSDANVLSTPNLVTLDNEEAKIVVGQNVPIATGSYSN 547

Query: 296 -KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRV 353
             + +++    +    D G+ LH  P +   G + L++ TE S  V    +A   P++  
Sbjct: 548 LTSGNTNNAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAVVAGTTSAQTGPTFTK 607

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R   +T+   +G  IVL GL++D+ Q     +PLL  IP +G LFR+    R +T + + 
Sbjct: 608 RSIQSTILADNGEIIVLGGLMQDNYQVSNSKVPLLGDIPWIGQLFRSESKIRAKTNLMVF 667

Query: 414 ATPFLV 419
             P ++
Sbjct: 668 LRPVII 673


>gi|332529515|ref|ZP_08405473.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
 gi|332041035|gb|EGI77403.1| type II and III secretion system protein [Hylemonella gracilis ATCC
           19624]
          Length = 509

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/248 (20%), Positives = 96/248 (38%), Gaps = 27/248 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQI------------------------GFQHSITGSSSGPSKS 229
            QV ++  I E      + +                         +  +  G+  G   +
Sbjct: 255 RQVLIEARIVEASDTFSRSLGARLGGAGGRSPSGGAGAGAGFGGSYSATAAGAGGGSFVN 314

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             +   G   +     S+ G          + ALE     + ++ P +       A    
Sbjct: 315 LPSPGLGGQPAGVFAVSIFGESAARFLNLEISALEADGKGKVVSSPRVVTADKVKALIEQ 374

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           G +  Y+ VS+S+GATS++     ++L  TP +   G + L    +VS+  +G +     
Sbjct: 375 GTELPYQ-VSTSSGATSISFRKANLMLEVTPQITPEGNVILE--VDVSKDSVGQDTQAGF 431

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +   T V + +GGT+V+ G+   + ++    IP L  +P LGALFR      E+ E
Sbjct: 432 AIDTKHVKTQVLVENGGTVVIGGIYTQEERETVTKIPFLGDLPGLGALFRAKETRSEKRE 491

Query: 410 IFIAATPF 417
           + +  TP 
Sbjct: 492 MLVFITPK 499


>gi|327538204|gb|EGF24886.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           WH47]
          Length = 822

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 79/419 (18%), Positives = 160/419 (38%), Gaps = 53/419 (12%)

Query: 27  PPIKEANAAVINISDVEIGKGKKIS-IGLNKVIILQVPVDVQDV---LVSDPTKADVVVH 82
              +   ++ I  + + +    +I  IG   ++++    ++  V   L++   +A V   
Sbjct: 211 AADEAEMSSTIAAAQLLLSDRGRIQPIGRGAILVVDSKDNIDRVQQMLIAMLPEATVQST 270

Query: 83  SPRTMYLFGKNVG---QANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-RV 138
           S  +    G + G    A+  +      +++ L      + + +  +L   + +  I  V
Sbjct: 271 SNPS---DGTSPGFQRPASPNVYDAMATEIIYLTPQFT-EASEMRESLEGALGEGTIVSV 326

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               + +++ G    ++ + +A +                         L++    QV +
Sbjct: 327 YEAENRILIKGNRAQLELASQAFK------------------------QLDVP-RAQVRI 361

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEGGDFSVK 248
              I +V  + L+++G             +S  AD  G                  F ++
Sbjct: 362 TALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGASSFGIR 421

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGA 304
            + D F    +L AL+ +   + LA+P++TAI  + AS     Q           S+   
Sbjct: 422 TLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAEGSNVVF 481

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             V   D G++L  TP + +   I L++Q E S  V  +   + P    R A+TTV + +
Sbjct: 482 AQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAETTVRVAN 539

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           G    L GL +  I +   G+P L  +  +G LFR+      E+E+ +   P ++ P  
Sbjct: 540 GHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEIISPYD 598


>gi|153868094|ref|ZP_01998196.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
 gi|152144586|gb|EDN71804.1| Bacterial type II and III secretion system protein [Beggiatoa sp.
           SS]
          Length = 219

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 42/208 (20%), Positives = 81/208 (38%), Gaps = 3/208 (1%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLDRFSFETVLHALERATAIRTL 272
           GF    T +  G  ++F                +  G +  +  +  L A++   +   +
Sbjct: 12  GFTSDNTLTGEGQGENFIVSLPAIVEGTPASLGLAIGKIGSYLLQLELSAMQSEGSGEII 71

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P +   + Q A  T G +  Y   +       V      + L  TP +    RI + +
Sbjct: 72  SSPRIITGNQQEAIITQGSEIPYVESAGVGAVAQVQFKQAVLELKVTPQITPDDRINMEL 131

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +       +N     S   R+  T V + +G T+VL G+ +         +P LS +P
Sbjct: 132 SIKKDSVGARINGN--ISIDKREVKTNVLVDNGDTVVLGGVYERSSSNNITRVPFLSDLP 189

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           ++G LF+      +++E+ I  TP ++K
Sbjct: 190 LIGNLFKRRSSQDDKSELLIFVTPRIIK 217


>gi|55981352|ref|YP_144649.1| general secretion pathway protein PilQ [Thermus thermophilus HB8]
 gi|55772765|dbj|BAD71206.1| general secretion pathway protein (PilQ) [Thermus thermophilus HB8]
          Length = 757

 Score =  158 bits (400), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 73/353 (20%), Positives = 144/353 (40%), Gaps = 35/353 (9%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRF--IADSNIRVEMVSDTVVLHGMVRTIQD 156
           +++    G+ +L++    E+ +A +E  L +     +    V   +  +     V   Q 
Sbjct: 414 IVVQTVPGQPVLSVR-GTEKQLAEVESLLAQIDRAPEQGPPVFQRAYQLSNAKAVELAQV 472

Query: 157 SQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGED------------------ 194
            Q A++     ++   +Q+   + A   +    N L + G                    
Sbjct: 473 LQEALKARQAQNQGQQNQALPTREATVVADPRTNTLIVTGTQEDLALVEGLIPKLDQPVP 532

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV+L+V I EV+ ++ + +G + +     +  +    +     F S          L   
Sbjct: 533 QVSLRVRIQEVQSNLTRSLGLKWNSIAGGNVAASILDSGLSLIFDS-------TRSLAAL 585

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +    L AL++    R L +   T ++ Q+A   SG     + V +          D G+
Sbjct: 586 NIMATLDALQQQGLSRALRDVNQTVLNNQTARLQSGETFFIRRVVNDQVERV--PFDVGL 643

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGL 373
           ++  TP + + G+I L I+ E+S  V      GD+  +  +   TT+ +  G T+VL GL
Sbjct: 644 IVEVTPQITADGQILLNIKAEISGNVQRNPVDGDVDRFTKQVVTTTLRVKDGETVVLGGL 703

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
              +  Q ++G+PLL  IP++G LF+       + E+ +  T  ++K  A  +
Sbjct: 704 TSQESNQSQQGVPLLMDIPLIGELFKQRTNESTDKELLVVITADILKETASAN 756


>gi|32477970|ref|NP_870964.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
 gi|32448527|emb|CAD78042.1| general secretion pathway protein D (outD) [Rhodopirellula baltica
           SH 1]
          Length = 822

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/245 (24%), Positives = 101/245 (41%), Gaps = 16/245 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK----------FVSEG 242
             QV +   I +V  + L+++G             +S  AD  G                
Sbjct: 356 RAQVRITALIYDVSLEELEELGVNWGRGFRLDTTDESALADLAGNVEKAVTFGTLGSGGA 415

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTV 298
             F ++ + D F    +L AL+ +   + LA+P++TAI  + AS     Q          
Sbjct: 416 SSFGIRTLTDTFDTSVLLRALDSSDEAKLLADPSITAIDRREASIKIVQQIPIVAASPAE 475

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            S+     V   D G++L  TP + +   I L++Q E S  V  +   + P    R A+T
Sbjct: 476 GSNVVFAQVEFKDAGIILKVTPRISNDNTIELQVQPEYSVKVGEIE--NNPVIDSRTAET 533

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           TV + +G    L GL +  I +   G+P L  +  +G LFR+      E+E+ +   P +
Sbjct: 534 TVRVANGHMFTLGGLRQKRIIEGTSGVPYLRDLKYVGKLFRSHSTEVRESELIVFLKPEI 593

Query: 419 VKPVA 423
           + P  
Sbjct: 594 ISPYD 598


>gi|162417759|ref|YP_001604484.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294496845|ref|YP_003560542.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
 gi|162354779|gb|ABX88726.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Angola]
 gi|294352433|gb|ADE66490.1| type III secretion outer membrane pore YscC [Yersinia pestis
           Z176003]
          Length = 612

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   ++     S     
Sbjct: 210 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 262

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 263 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 322

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 323 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 382

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
              +  K          +    YG +L  TP VL+ G    I L +  E  ++       
Sbjct: 383 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 440

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 441 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 500

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 501 RRTVRLFIIEPRIIDEGIAHHLAL 524


>gi|289549028|ref|YP_003474016.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
 gi|289182645|gb|ADC89889.1| general secretion pathway protein D [Thermocrinis albus DSM 14484]
          Length = 637

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/315 (19%), Positives = 122/315 (38%), Gaps = 28/315 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK---KVMNLLNIAGEDQVTLKVTIAEVR 206
            V     ++  + +     + S          +   K++  L++    QV +  ++ E+ 
Sbjct: 317 TVPPAIQTREGLRIGYDRGTNSLLVYATPKELENLQKLIKKLDVR-RKQVLIAASVVEMS 375

Query: 207 RDILKQIGFQHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
                 +G +  I G+  G            S   + +F    +S  G     G  + F 
Sbjct: 376 TTKALDLGVRWQILGTQGGGAFGGSTLQDLSSALLSGNFVLGLLSSSGRSITVGGTNLFF 435

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVTT 309
                +   LE+ T    L+ P L  +  Q A    G    + +      +     +   
Sbjct: 436 PDLVLLFSLLEKGTGFNLLSNPKLLTLDNQPAEIKVGQVVPFASGVKFDINGQPVITYDY 495

Query: 310 HDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPS 364
            + G+ L  TP+V        I L++Q  +    P IG  +  +P    R+ ++ V + +
Sbjct: 496 KEVGLDLRITPSVSEKNLRLSISLQVQEIIDFLRPQIGTLSYAVPVTSNRQVNSEVVVEN 555

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G TI++ GL+     +  EG+P L  +P+LG LF+      ++  +FI  TP++++  + 
Sbjct: 556 GQTIIIGGLINTRALRSTEGVPGLQDVPVLGWLFKRKTTQEDKVSLFIFITPYVIE--SP 613

Query: 425 RDLSRPDDHYSVEDD 439
            +LSR    +    D
Sbjct: 614 EELSRITQEHQKLAD 628


>gi|94267441|ref|ZP_01290880.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
 gi|93452009|gb|EAT02711.1| type II and III secretion system protein:Secretin/TonB, short-like
           [delta proteobacterium MLMS-1]
          Length = 555

 Score =  158 bits (400), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 65/323 (20%), Positives = 118/323 (36%), Gaps = 49/323 (15%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTI 202
           ++ G  R  +D  +A ++     S     +      ++V   ++ L      QV L+  I
Sbjct: 206 MIVGTDRGREDGSQARQVIVNSKSGLVMVRALPGELREVETFLDALLENALRQVMLEAKI 265

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------- 252
            EV  D   Q G       +S      F    GG  + +G         +          
Sbjct: 266 IEVELDEAFQSGINWGQLATSGSGEWQFGQIGGGTVLDDGVSAIAGNTGNIGVDNFDPID 325

Query: 253 ----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                           R +F   +  L+    +  L+ P +   + Q A    G    + 
Sbjct: 326 GTATSAFGGVFTMAADRSNFHAFIELLKTQGDVHVLSSPRVATTNNQKALIKVGNDEYFV 385

Query: 297 TVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           T  S +  T            +T    G+ L  TPT+     + L I+  VS+      +
Sbjct: 386 TDVSFSTRTTGTDDTIYPDLELTPFFSGIALDVTPTITDGNEVILHIRPSVSQVRDQTKS 445

Query: 346 GDMPSYRV---------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             +              R++D+ V   SG  I++ GL++D  ++ + G+P L  +P++G 
Sbjct: 446 FTVAGQTQSLPLALSRMRESDSIVRARSGQVIIIGGLMEDSWREQRAGLPGLGDLPLVGN 505

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
           LFR  R+++ +TE+ I   P +V
Sbjct: 506 LFRQQRWSQRKTELVILLRPVVV 528


>gi|225850524|ref|YP_002730758.1| putative pilus [Persephonella marina EX-H1]
 gi|225645353|gb|ACO03539.1| putative pilus [Persephonella marina EX-H1]
          Length = 524

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 22/255 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K +  +    + QV ++  I EV      Q G   S    +   +            S 
Sbjct: 269 EKFLKKILSEVKKQVLIESKIVEVTLSDGMQYGINWSALLRNVAGASISLRQTLALPSSY 328

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G     + V+    F  V++AL     I TL+ P +  ++GQ+A  +SG    Y     +
Sbjct: 329 G-----EVVVAGLDFNAVINALSSVGRIETLSNPRIRVLNGQTALISSGVVVPYWEKQIT 383

Query: 302 TGATSVTTHDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-------A 345
           T  T+  T            GV+L  TP  +    I + I    ++              
Sbjct: 384 TLGTTTVTQSVMYIRRSVLSGVLLGVTP-YIEGDHIMINIVPVSTKIEGTKQLVENNEVV 442

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            + P   +++A T +++  G  I++ G++  + +  +  IPLLS IP+ G LF+N +  R
Sbjct: 443 AEAPVLNIKEAGTIIKVKDGDLIIIGGMINTEKRVEENKIPLLSNIPVFGNLFKNKKVYR 502

Query: 406 EETEIFIAATPFLVK 420
           E+ E+ I   P ++K
Sbjct: 503 EKKELIIFLKPRIIK 517


>gi|166713254|ref|ZP_02244461.1| fimbrial assembly protein [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 648

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 101/281 (35%), Gaps = 47/281 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  I G++                           
Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGIIGATGRGILSGSLDSNTNYQNTSAQRASEIA 425

Query: 224 ------------SGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIR 270
                            +     GG F +   G  +   +   F+ +  L A+++     
Sbjct: 426 NGGTSTTLPAHLFPSGLNVNLGAGGGFTTNTPGGLAYTLLGSNFNLDIELSAMQQEGRGE 485

Query: 271 TLAEPTLTAISGQSASFTSGGQ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            ++ P +   + +      G +     +  + +      +V   +  + L  TPT+ +  
Sbjct: 486 VVSNPRIVTANQREGVIKQGREIGYVTISGSGAGGGSQANVQFKEVLLELKVTPTITNDN 545

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +  +  E    ++    G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 546 RVFLSMNVKKDEVARLIDLPLYGTVPEINRREINTAVLVGDGETVVIGGVYEFTDRESVA 605

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            +P L  IP LG LF+    ++E+ E+ +  TP +++  + 
Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 646


>gi|21232657|ref|NP_638574.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767269|ref|YP_242031.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|21114464|gb|AAM42498.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66572601|gb|AAY48011.1| fimbrial assembly protein [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 648

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 45/282 (15%), Positives = 97/282 (34%), Gaps = 47/282 (16%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  +TG++                           
Sbjct: 366 RPVDQVLIESRIVIATDTFARDLGARFGVTGATGRGILSGSLESNVNYLNTSAQSRLEQA 425

Query: 224 ------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                            +     GG   S     +   +   F+ +  L A++       
Sbjct: 426 NGGQVTTLPAHLFPSGLNVDLGAGGFTNSGAAGLAYTLLGSHFNLDIELSAMQEEGRGEV 485

Query: 272 LAEPTLTAISGQSASFTSGGQH-----LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
           ++ P +   + +      G +          V+      +V   +  + L  TPT+ +  
Sbjct: 486 VSNPRIVTANQREGVIKQGREIGYVTISGAGVAGGGSQANVQFKEVLLELKVTPTITNDN 545

Query: 327 RIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           R+ L +  +  E    +     G +P    R+ +T V +  G T+V+ G+ +   ++   
Sbjct: 546 RVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFTDRESVA 605

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +P L  IP LG LF+    ++E+ E+ +  TP +++  +  
Sbjct: 606 KVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASAA 647


>gi|16082740|ref|NP_395186.1| outer membrane secretin precursor [Yersinia pestis CO92]
 gi|31795269|ref|NP_857730.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|31795473|ref|NP_857925.1| outer membrane secretin precursor [Yersinia pestis KIM]
 gi|45478532|ref|NP_995359.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108793654|ref|YP_636804.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145597132|ref|YP_001154596.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|149192687|ref|YP_001293919.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165927821|ref|ZP_02223653.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165940102|ref|ZP_02228636.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011759|ref|ZP_02232657.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214450|ref|ZP_02240485.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401969|ref|ZP_02307455.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422893|ref|ZP_02314646.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426864|ref|ZP_02318617.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229896868|ref|ZP_04512028.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|229900223|ref|ZP_04515359.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|270491097|ref|ZP_06208169.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|322836578|ref|YP_004210074.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
 gi|155446|gb|AAA27638.1| KIM5 [Yersinia pestis]
 gi|2996229|gb|AAC62552.1| Yop proteins translocation protein C homolog [Yersinia pestis KIM
           10]
 gi|3822061|gb|AAC69781.1| type III secretion protein [Yersinia pestis KIM 10]
 gi|5832472|emb|CAB54929.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|45357154|gb|AAS58550.1| putative type III secretion protein YscC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108782201|gb|ABG16256.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212900|gb|ABP42306.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|148872345|gb|ABR14835.1| Type III secretion outer membrane pore protein [Yersinia pestis
           CA88-4125]
 gi|165912012|gb|EDR30655.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920257|gb|EDR37558.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989366|gb|EDR41667.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204343|gb|EDR48823.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958183|gb|EDR55204.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048697|gb|EDR60105.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054163|gb|EDR63990.1| type III secretion outer membrane pore YscC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229686743|gb|EEO78823.1| Type III secretion outer membrane pore protein [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229700139|gb|EEO88178.1| Type III secretion outer membrane pore protein [Yersinia pestis
           Pestoides A]
 gi|262364013|gb|ACY64350.1| outer membrane secretin precursor [Yersinia pestis D182038]
 gi|270334840|gb|EFA45619.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|317374471|gb|ADV16646.1| type III secretion outermembrane pore forming protein [Yersinia
           pestis]
 gi|321161352|gb|ADW67058.1| type III secretion outer membrane pore YscC [Yersinia pestis Java
           9]
          Length = 607

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   ++     S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
              +  K          +    YG +L  TP VL+ G    I L +  E  ++       
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|115376293|ref|ZP_01463533.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|310823667|ref|YP_003956025.1| type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
 gi|115366718|gb|EAU65713.1| type IV pilus secretin PilQ subfamily, putative [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396739|gb|ADO74198.1| Type IV pilus secretin PilQ [Stigmatella aurantiaca DW4/3-1]
          Length = 906

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 49/289 (16%), Positives = 94/289 (32%), Gaps = 36/289 (12%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
             T +      +     ++ ++  L+     QV ++  I E      + IG Q    G +
Sbjct: 612 VRTNVLIVKDVRANIEKARALVRNLDTQTP-QVLIESRIVEATTAFSRSIGVQWGGRGQA 670

Query: 224 SGPSKSFAA--------------------------------DFGGKFVSEGGDFSVKGVL 251
           +  + +                                               F+     
Sbjct: 671 NAATGNATGLIFPNTIGGFGSAGGGTPAGFSGDPGFAVNLPAPTTLGQGGALGFTFGSAG 730

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                   L A E    ++T++ P +T +   +A              +S    + T  +
Sbjct: 731 GALGLNLRLSAAENDGYVKTISAPKVTTLDNNTARI--SQGVSIPFSQTSANGANTTFIE 788

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVL 370
             + L  TP +   G I + I  + ++P          P+ + ++A+T V +  G T V+
Sbjct: 789 ARLSLEVTPHITQDGSILMNIIAQNNQPDAANTGANGQPAIQRKEANTQVLVKDGDTTVI 848

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+           IP  SKIP+LG  FR +    +  E+ I  TP ++
Sbjct: 849 GGIYVRRGSTNHASIPFFSKIPVLGFFFRQTTERDDRQELLIFITPRIL 897


>gi|188990167|ref|YP_001902177.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731927|emb|CAP50113.1| exported type II protein secretion system protein D [Xanthomonas
           campestris pv. campestris]
          Length = 690

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   +       +          V    +       +     +   V+  L++
Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              +QV ++  + E+     K++G Q  + G +           G          +  G 
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412

Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275
                                                   F  ++ A++  T    L+ P
Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+       +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P LGALFR+   NR++T + +   P +++  A   
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629


>gi|21232854|ref|NP_638771.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767075|ref|YP_241837.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|21114682|gb|AAM42695.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66572407|gb|AAY47817.1| type II secretion system protein D [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 690

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/397 (17%), Positives = 134/397 (33%), Gaps = 43/397 (10%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 234 GDPALVQRVVRTALDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAEPGQE 293

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   +       +          V    +       +     +   V+  L++
Sbjct: 294 TRPTAVDVAASAGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 353

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
              +QV ++  + E+     K++G Q  + G +           G          +  G 
Sbjct: 354 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLLATQYSGAAPGIVPLAAAAAGT 412

Query: 251 LDRFS-----------------------------------FETVLHALERATAIRTLAEP 275
                                                   F  ++ A++  T    L+ P
Sbjct: 413 RSNNGEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 472

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 473 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 532

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+       +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 533 AIKQEVSAIAGPVSTQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 592

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +P LGALFR+   NR++T + +   P +++  A   
Sbjct: 593 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRDAADAQ 629


>gi|312143742|ref|YP_003995188.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
 gi|311904393|gb|ADQ14834.1| type II and III secretion system protein [Halanaerobium sp.
           'sapolanicus']
          Length = 431

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/339 (20%), Positives = 134/339 (39%), Gaps = 51/339 (15%)

Query: 83  SPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
           +  T+Y+  +     N+       K +    +L   +       L++  +D N  + + S
Sbjct: 95  TENTIYVSSRE----NIEAQDK--KLIKKNYLLENINSERAIEHLQKIFSDLNF-INLES 147

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
           D ++L     + ++ Q+  +L                             + QV +K  I
Sbjct: 148 DGILLE---ASEKEHQQIEKLIAGLD----------------------RPQKQVLIKARI 182

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            E+ R+ +K++G                       F+ +      K  ++       L  
Sbjct: 183 EEISRNKVKELGINPDQLSE-------------LSFIKDDSGSIEKIRVNWPD---TLKI 226

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--TVSSSTGATSVTTHDYGVVLHFTP 320
           LE   A   LA P+L  +  Q A    G Q   K   V      +S++  + G+VL F P
Sbjct: 227 LEEEGASNILANPSLMTLDRQKAKLVIGDQIPVKLERVEGDNIVSSLSYIEAGIVLEFLP 286

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +++  +I L I+  V+     V +  +P+   R A+TTV L +   + + GL+K+D  +
Sbjct: 287 KIINDNQILLEIKPSVNSI-GQVVSDGLPAVNSRSAETTVILENEQVLAIGGLIKEDEIK 345

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               IP  S++P+ G LF++ +     +E+ I  +P ++
Sbjct: 346 SLSKIPFFSELPLFGNLFKSEKSTVMNSELMIFISPEII 384


>gi|320451127|ref|YP_004203223.1| general secretion pathway protein [Thermus scotoductus SA-01]
 gi|320151296|gb|ADW22674.1| general secretion pathway protein [Thermus scotoductus SA-01]
          Length = 754

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 124/298 (41%), Gaps = 29/298 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------------ 194
           L  +++    +++A ++ ++        + A   + +  N L + G              
Sbjct: 467 LAKVLQEALQARQA-QVPQSQAQPQAPTRQATVVADERTNTLIVTGTQEDLALVEGLIPK 525

Query: 195 ------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
                 QV L+V I EV+ +  + +G + +     +  +    +     F S        
Sbjct: 526 LDQAVPQVNLRVRIQEVQSNFTRNLGIKWNTIAGGNVAASILDSGLSLIFDS-------T 578

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
             L   +    L AL+R    R L +   T ++ Q+A   SG   L + V          
Sbjct: 579 RSLAALNILATLEALQRQGLSRALRDVNQTVLNNQTARLQSGETFLIRRVV--NDRVERV 636

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
             D G+++  TP + + G+I L I+ EVS  V      GD+  +  +   TT+ +  G T
Sbjct: 637 PFDIGIIVEVTPQITADGQILLNIKAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQT 696

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +VL GL   +  Q+++G+PLL  IP++G LF+       + E+ +  T  ++K  A R
Sbjct: 697 VVLGGLTSQENTQVQQGVPLLMDIPLIGELFKQRSQETTDRELLVVITADILKETASR 754


>gi|315500691|ref|YP_004089492.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315418703|gb|ADU15341.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 626

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 63/274 (22%), Positives = 111/274 (40%), Gaps = 13/274 (4%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R V   ET        +      + V+N ++     QVT++ +I EV  +     G    
Sbjct: 334 RIVADKETNTVIVSAPEAERVRIQSVLNEVD-REPAQVTIEASIVEVTLNNEFSFGVDWQ 392

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               +   S            + G   +      R   +  L+AL   + +R ++ P +T
Sbjct: 393 TINGALSLSNYTTDSTSLAPQAPGFSVNYL----RSDIKAALNALSSKSKVRIVSAPKMT 448

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           A    +AS   G Q      +S +         +++   D GV L  TP VL+  R+ + 
Sbjct: 449 ARENATASLQIGDQVPIVKQNSQSTNGGNAPIVSTIDYRDTGVTLKVTPRVLNDNRVAMD 508

Query: 332 IQTEVSEPV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +  EVS       +  D P+ + RK ++++ +P G  + L GL+       + G PLL  
Sbjct: 509 VTQEVSSVARTQTSGIDSPTIKQRKLESSLIIPEGTVVALGGLISSSESDSEGGAPLLKD 568

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           IP LG LF+    N++ TE+ +     +++  A 
Sbjct: 569 IPGLGNLFKQRARNKDRTELIVLIQVTILRDPAA 602


>gi|459551|gb|AAA16704.1| fimbrial assembly protein [Pseudomonas aeruginosa PAO1]
          Length = 727

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 98/269 (36%), Gaps = 35/269 (13%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------------- 228
           ++++ L+I    QV ++  I E      K +G +          S               
Sbjct: 451 RIVSQLDIPVR-QVMIEARIVEANVGYDKSLGVRWGGAYHKGNWSGYGKDGNIGIKDEDG 509

Query: 229 --------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI----- 269
                         +  +     FV  G   +  G+   F  + ++  L+          
Sbjct: 510 MNCGPIAGSCTFPTTGTSKSPSPFVDLGAKDATSGIGIGFITDNIILDLQPVGDGKDRQR 569

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           R +++P +     ++A    G +  Y+  SSS   ++ +  +  + L  TP +    RI 
Sbjct: 570 RVVSQPKVVTSDKETAKILKGSEVPYQEASSSGATST-SFKEAALSLEVTPQITPDNRII 628

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           + ++     P        +P     + +  + +  G TIV+ G+  ++  +  E +P L 
Sbjct: 629 VEVKVTKDAPDYQNMLNGVPPINKNEVNAKILVNDGETIVIGGVFSNEQSKSVEKVPFLG 688

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
           ++P LG LFR       + E+ +  TP +
Sbjct: 689 ELPYLGRLFRRDTVTDRKNELLVFLTPRI 717


>gi|88811950|ref|ZP_01127203.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
 gi|88790834|gb|EAR21948.1| Fimbrial assembly protein pilQ precursor [Nitrococcus mobilis
           Nb-231]
          Length = 686

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/363 (17%), Positives = 131/363 (36%), Gaps = 37/363 (10%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   ++    +      L++  ++ I  L      FI  +  + + ++  ++  G  
Sbjct: 322 RQTGNVMLVAPAAEIAAREKLELQAKQQIQQLAPLHSEFIQVNYAKAQDLAQLILGGGQK 381

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                S R     +   +         +     ++++ L+I    QV ++  +     D 
Sbjct: 382 GRSLLSDRGTVNVDERTNTLITRDTEQNLDDIRRLVSKLDIPVR-QVLIESRVVIANDDF 440

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------------- 238
             ++G +   + + S    S      G                                 
Sbjct: 441 TNELGVRFGYSRNQSNFGTSNHGAVIGGTQPGNVNFGQSTGFEVPAGSGNEGLLVDLPVT 500

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            + G      G +  +  +  L A+E       ++ P +   + + A    G Q  ++  
Sbjct: 501 AAAGSVGLAVGKIGSYLLQLELSAMENENRGNLISTPRVITTNQKEAYIKQGVQIPFQQA 560

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           +SS GATSV   +  + L  TP +    RI L +  +V++   G      P+   +   T
Sbjct: 561 TSS-GATSVQFKEAVLGLTVTPQITPDDRILLDL--QVTKDSRGEQTNAGPAINTQSLGT 617

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G TIVL G+ + +  +    +P   ++P+LG LFRN+       E+ I  TP +
Sbjct: 618 QVLVDNGETIVLGGVYERNKNRTINRVPFFGELPLLGWLFRNTVRVDNNKELLIFVTPKI 677

Query: 419 VKP 421
           +K 
Sbjct: 678 LKA 680


>gi|186897497|ref|YP_001874608.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|186700523|gb|ACC91151.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 607

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   ++     S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDKSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
              +  K          +    YG +L  TP VL+ G    I L +  E  ++       
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|296113651|ref|YP_003627589.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|295921345|gb|ADG61696.1| type IV pilus secretin PilQ [Moraxella catarrhalis RH4]
 gi|326566933|gb|EGE17071.1| type IV pilus secretin PilQ [Moraxella catarrhalis 12P80B1]
 gi|326568865|gb|EGE18935.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC8]
          Length = 473

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G + + + +    + + T + Q      AN  +  ++  ++I   +QV ++  I    
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241

Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
            +  +++G      G +     G S+        + V+ GG                   
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             G+L+      +  L A++       ++ P +     Q+A  +SG Q  Y+  + S  +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  ++L  TP +   G+IGL++  +   PV         + +    +T V +  
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|326560015|gb|EGE10410.1| type IV pilus secretin PilQ [Moraxella catarrhalis 46P47B1]
          Length = 473

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G + + + +    + + T + Q      AN  +  ++  ++I   +QV ++  I    
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241

Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
            +  +++G      G +     G S+        + V+ GG                   
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             G+L+      +  L A++       ++ P +     Q+A  +SG Q  Y+  + S  +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  ++L  TP +   G+IGL++  +   PV         + +    +T V +  
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|294791632|ref|ZP_06756780.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
 gi|294456862|gb|EFG25224.1| putative type II and III secretion system protein [Veillonella sp.
           6_1_27]
          Length = 432

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V T+  + +   LSE                + ++  ++     QV L+ TI  + 
Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 223

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ A++G++A    G +      S   G         + G+ L++TP + +
Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LFR+SR  ++  E+ +     +V
Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432


>gi|325914232|ref|ZP_08176582.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539487|gb|EGD11133.1| General secretion pathway protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 778

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 71/307 (23%), Positives = 120/307 (39%), Gaps = 39/307 (12%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          + +S + V+  L++    QV ++  IAEV      + G     
Sbjct: 454 VSAVAETNTLLVRSTPQSWNSIRDVIEKLDV-MPMQVHIEAQIAEVNLTGELRYGVNWYF 512

Query: 220 TG--------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETV 259
                     + +G +       G    +  G      +                +   +
Sbjct: 513 ENAVNAPGAATDNGVTNGTGIGLGAGLANAAGRNIWGDIAGKVGSGGLAWSFLGKNAAAI 572

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYG 313
           + AL+  T +R L  P++   +   A+   G +    + S +TG       +SV   D G
Sbjct: 573 ISALDTVTNVRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTG 632

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVEL 362
           V+L   P V   G + L I  EVS P                A        R+  T   +
Sbjct: 633 VILKVRPRVTKDGMVFLDIVQEVSSPGDRPTACASATATVNQAACNVDINTRRIKTEAAI 692

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-P 421
            SG TI+LAGL++D       G+P LSK+P+LG+LF     N+  +E+ +  TP +V+ P
Sbjct: 693 QSGDTIMLAGLIQDSTSDGSAGVPFLSKLPVLGSLFGQKTQNKRRSEVIVLLTPSIVRNP 752

Query: 422 VAMRDLS 428
           +  R+L+
Sbjct: 753 MEARNLT 759


>gi|284432091|gb|ADB84853.1| PilQ [Bdellovibrio bacteriovorus]
          Length = 726

 Score =  158 bits (399), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 121/328 (36%), Gaps = 22/328 (6%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           LE    R    S  +V+ +   +        + D  R V    T        +     + 
Sbjct: 405 LEPLKVRMFPVSYAKVDELEKKIK-----DFLGDRGRVVGDVRTNALVVTDIEENLERAA 459

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSF 230
           +++  L+     QV+++  I E +    + IG   S TG+            +  PS + 
Sbjct: 460 RLIASLD-TQPAQVSIEGXIVEAKESFTRNIGVNWSATGAPIKLGSTXRGPVNMNPSFNV 518

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                G   +   + +V  +    +    L   E    ++ ++ P +  +S + A     
Sbjct: 519 NQSAAGSSGALNFNLNVGTLDIFGTLSAALALNESEEQVKIISAPRIMTLSNEKADINQT 578

Query: 291 GQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG 346
            +   + V+ +  AT          + L  TP V + G + +++          +     
Sbjct: 579 TEVPVRQVTQNGTATQETFQFKPLTLKLEVTPQVTADGSVIMKVLVNRQFRGADVSSAGQ 638

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +   R+A+T V + +G T V+ G+ + +    + G+P   ++P +  LF+    ++E
Sbjct: 639 GAFAVNSREANTRVLVKNGQTAVIGGIYQSEATDGEVGVPWFRQLPFVSYLFKTKNISKE 698

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           ++E+ I  TP ++  +     +     +
Sbjct: 699 KSELLILLTPRIMGQIDNNAGNPTTTDF 726


>gi|307720370|ref|YP_003891510.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978463|gb|ADN08498.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 504

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 54/270 (20%), Positives = 98/270 (36%), Gaps = 20/270 (7%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             L     ++      +  ++LL      QV ++V + E+  D     G   S    S  
Sbjct: 209 ASLLTVNADKKDLQKIQNFLDLLMKRMHKQVLIEVKLIELVYDDSHSSGIDWSQLNVSLN 268

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +       GG   +     +       F        L     ++ ++ P +  ++ Q A
Sbjct: 269 GTLGGTQGTGGNTFNNSYSIAYNFSTSNF-----FKYLNTFGDVKVMSNPKILTMNNQPA 323

Query: 286 SFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFTPTVLSPGRIGLRIQTE 335
               G Q  YK  + S   T  T              G+ L+  P +     I + I   
Sbjct: 324 VVNVGQQLSYKYQTGSVTTTGGTAAGTNTFSLGSTFIGITLYVIPEITDSNEILMSINPV 383

Query: 336 VSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           VS                P  ++++  + V++ +G  +++ GL+     +  + IP+L  
Sbjct: 384 VSSLSADNTPTTSIREIPPDTKIKQMTSVVKVKNGQKVLIGGLISATKGKDSKKIPILGD 443

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           IPIL  +FR +   +  TE+FI  TP +VK
Sbjct: 444 IPILSTIFRYTNNKKSRTEMFILITPKIVK 473


>gi|51593921|ref|YP_068488.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|51591618|emb|CAF25422.1| yscC; putative type III secretion protein [Yersinia
           pseudotuberculosis IP 32953]
          Length = 607

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   ++     S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
              +  K          +    YG +L  TP VL+ G    I L +  E  ++       
Sbjct: 378 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 436 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|218458719|ref|ZP_03498810.1| pilus assembly secretion protein [Rhizobium etli Kim 5]
          Length = 258

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/233 (40%), Positives = 142/233 (60%), Gaps = 21/233 (9%)

Query: 12  MSIFLFSSNPS----VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    +  +   +  +  +I I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPASFGPLLTVDEARADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK----- 182
           RRFI DS I VE+VSD +VL G VRT QD+ +A +L++ FL          ++S      
Sbjct: 138 RRFIPDSAINVEIVSDNIVLTGTVRTPQDATQAADLAQVFLKGGEATTRTETASGTGGDS 197

Query: 183 ------------KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
                       +V+NLL I GEDQVTLKVTIAEVRR++LKQ+GF + ++ SS
Sbjct: 198 AVALFAEGRQTSQVVNLLKIEGEDQVTLKVTIAEVRREVLKQLGFDNLVSNSS 250


>gi|78049214|ref|YP_365389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78037644|emb|CAJ25389.1| type II secretory pathway component [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 759

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/317 (23%), Positives = 126/317 (39%), Gaps = 34/317 (10%)

Query: 149 GMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           G V    +  +     ++ET       +  A SS + V+  L++    QV ++  IAEV 
Sbjct: 432 GSVTLEVEGDKVGVSAVAETNTLLVRSSAQAWSSIRDVIERLDV-MPMQVHIEAQIAEVT 490

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFS 255
                + G       + + P  +      G   + G            +  +       +
Sbjct: 491 LTGQLEYGVNWYFENAVNAPVNADGTGGAGLPSAAGRGIWGDVSGSVTNNGLAWTFLGKN 550

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTT 309
              ++ AL+R T +R L  P++   +   A+   G +    + S +TG       +SV  
Sbjct: 551 AAAIISALDRVTNLRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQY 610

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMPSYRVRKAD 357
            D GV+L   P V   G + L I  EVS P                +A        R+  
Sbjct: 611 IDTGVILKVRPRVTKDGMVFLDIVQEVSTPGARPAACTSASTTTVNSAACNVDINTRRVK 670

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   + +G TI+LAGL+ D       G+P+LSK+P++GALF     N++  E+ +  TP 
Sbjct: 671 TEAAVQNGDTIMLAGLIDDSTSDGSAGLPILSKLPVVGALFGRKTQNKDRREVIVLITPS 730

Query: 418 LVKPVAMRDLSRPDDHY 434
           +V+    ++     D Y
Sbjct: 731 IVR--NPQEARNLTDEY 745


>gi|300113065|ref|YP_003759640.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
 gi|299539002|gb|ADJ27319.1| type IV pilus secretin PilQ [Nitrosococcus watsonii C-113]
          Length = 699

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 108/328 (32%), Gaps = 46/328 (14%)

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
              L   I      +              T+     A  L+               + +K
Sbjct: 390 ASNLAALIQSEENSLLSARGHATFDERTNTLLVMDTADRLA---------------ALRK 434

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++  L+I    QV ++  +     D  +++G +  ++               G       
Sbjct: 435 LVASLDIPVR-QVLIESRVVIASSDFSRELGVRFGLSKQDKVGGAFDQVTTSGSLNGTTQ 493

Query: 244 DFSV--------------KGVLDRFSFETVLHAL-------------ERATAIRTLAEPT 276
             +                   D       L  L             +       ++ P 
Sbjct: 494 IINQETLELQDRLNVNFPVTKKDAAKIALALTNLPLGALLELELSALQAEGRGEVISNPR 553

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +   + + A    G +  Y+   SS+GATSV+     + L  TP +    RI + +   V
Sbjct: 554 VITSNQKEAIIEQGTEIPYQRA-SSSGATSVSFKKAVLSLKVTPQITPDDRIIMDLG--V 610

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           ++  +G     +PS   R+  T V + +G T+VL G+ + +  +    IP L  +P  G 
Sbjct: 611 TKDSVGKVFAGVPSINTREVSTQVLVNNGQTVVLGGIYEQEKNRAVRRIPFLGDLPYAGI 670

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAM 424
           LFR+      + E+ I  TP ++K  A 
Sbjct: 671 LFRDKTEFNNKRELLIFVTPKIIKEGAR 698


>gi|282856386|ref|ZP_06265665.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
 gi|282585757|gb|EFB91046.1| putative type IV pilus biogenesis protein PilQ [Pyramidobacter
           piscolens W5455]
          Length = 566

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 57/331 (17%), Positives = 108/331 (32%), Gaps = 51/331 (15%)

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
             ++    L+         + + V+   + +V+ G     +  +R + L +         
Sbjct: 252 EAQKTAPLLKELAELHSPANRVLVDERQNLIVVTGTAFQQEKVRRTLRLLDA-------- 303

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                               QV LK  I EV  D   Q+    +        S    A  
Sbjct: 304 -----------------PGRQVMLKARIIEVNDDASDQLETALNAVYDWWWGSYQNGALS 346

Query: 235 GGKFVSE-----------------------GGDFSVKGVLDRFSFETVLHALERATAIRT 271
            G   S                        G              +  L  L      R 
Sbjct: 347 AGFAQSGRKPGTAEGALGNLDTSANLPGEIGSGIVQLAGTATRMLDFRLRTLVEQKKARV 406

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           LA+PT+T + G+ A+     +  Y +        +    + G  L  TP +   G I + 
Sbjct: 407 LADPTVTVLDGEKATVKLVEKLKYVSRRDDAQNPTYDDEEVGPKLEVTPRIGRSGMITVS 466

Query: 332 IQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
           +     EV + + G     +P    R  +T + +  G   V+ GL K+   + +  +P+L
Sbjct: 467 VSLATGEVIQWIRGGQGEQIPQTNSRTVETKIRVRDGEPFVIGGLFKESRSRTRASVPIL 526

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S IP++G LF+     +  +++ +   P+++
Sbjct: 527 SSIPLIGELFKAKLDKKTRSQVVMILIPYIL 557


>gi|171319027|ref|ZP_02908154.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171095782|gb|EDT40735.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 633

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/297 (20%), Positives = 115/297 (38%), Gaps = 14/297 (4%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------GPSKSFAADF 234
           + V+  L++   + V ++  I +V+   LK+IGF  ++ GS         G         
Sbjct: 317 EDVVRDLDV-EPELVQIEAAIIDVQDGALKEIGFDWALQGSQFRIASTTSGAGIGRDLGN 375

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
             +    G +FS+ G     SF + +HAL+       L+ P L  ++G  A  T+     
Sbjct: 376 ADRVRGNGPNFSIFGGSSALSFLSRIHALQTEGKASVLSRPKLATLNGIEAVLTNQQVFY 435

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTP--TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSY 351
            +   S+     +   D G+ +   P     S G+  +R+Q  + +  +G      +P  
Sbjct: 436 PRV--SNERVAQLYQVDVGLQMRVVPAVVRRSDGKADIRLQVFIEDGSLGSQRVDGLPVT 493

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   + +G ++++ G ++D   + +  +PLL  IP+LGALFR      +  E  
Sbjct: 494 SKSAITTQALVRNGESLLIGGYVRDVNDRGEAKVPLLGDIPLLGALFRFRSTQTDRQERL 553

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
              TP L+      D +            +     R+ + +   +A        +  
Sbjct: 554 FLITPKLL-ATHDTDDTDDTPQAIGASHRERKVIERLTEHFASMDAGAPASGTTQEP 609


>gi|54306408|gb|AAV33391.1| type IV pilus biogenesis secretin PilQ [Moraxella catarrhalis 7169]
 gi|326559645|gb|EGE10059.1| type IV pilus secretin PilQ [Moraxella catarrhalis 7169]
 gi|326567677|gb|EGE17783.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC1]
 gi|326568688|gb|EGE18759.1| type IV pilus secretin PilQ [Moraxella catarrhalis BC7]
          Length = 473

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 119/296 (40%), Gaps = 29/296 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G + + + +    + + T + Q      AN  +  ++  ++I   +QV ++  I    
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241

Query: 207 RDILKQIGFQHSITGSS---------------------SGPSKSFAADFGGKFVSEGGDF 245
            +  +++G      G +                     +G  ++   +      +  G  
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMWQEGVAAGGHQNSHLNVDLGVDNAMGRI 301

Query: 246 SVKGV-LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           +   + L     +  L A++       ++ P +     Q+A  +SG Q  Y+  + S  +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  ++L  TP +   G+IGL++  +   PV         + +    +T V +  
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|224437102|ref|ZP_03658083.1| hypothetical protein HcinC1_04000 [Helicobacter cinaedi CCUG 18818]
          Length = 602

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               +++ +  +      L             +  +  LN   + QV + V I  ++   
Sbjct: 215 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 274

Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            +  G   +     G+      +             GDF++       S   ++  L+  
Sbjct: 275 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 334

Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316
             +++++ P +  ++ Q A  + G           Q   +  S    + +  +   G++L
Sbjct: 335 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 394

Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             TP+V +   I      +    ++S           P+   ++  + V++  G  IVL 
Sbjct: 395 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 454

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GL+     Q+   +P+L  IP++  LF   +  +E  E+ I  +P +V+  A   
Sbjct: 455 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 509


>gi|171321858|ref|ZP_02910757.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171092856|gb|EDT38111.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 895

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 72/399 (18%), Positives = 144/399 (36%), Gaps = 51/399 (12%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V    T+ ++     +A      +  +  +    L   D   +   LR+ I   ++ V+
Sbjct: 250 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 304

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+     TIQ +                        ++V+  L+I   + VTL 
Sbjct: 305 ERVNAIVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 339

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V + EV  +    +G Q+      S    +  A      +       +    +       
Sbjct: 340 VQVLEVNMNDSLDLGVQYPGKVQFSALGGAEGAALTLGDLLRMNRDRIGVSSESGGLALA 399

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
           +  L++    +TLA P +   + + AS   G +    T +++ G    SV+  D G++L 
Sbjct: 400 IDMLQKRGKTKTLANPKIRVRNLEKASIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 459

Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             P +     + +++  EVS               S   R A+T +   +G T +LAGL+
Sbjct: 460 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 519

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           K +      G+P +S +P+LG LF ++  + E +EI +  TP + + +            
Sbjct: 520 KRNESDSIAGLPGISGLPVLGRLFGSNSRSNERSEIVLLITPHIERNLD----------- 568

Query: 435 SVEDDAKAFFFNRVNKIYG-----PKEASEVEGQNYKGA 468
                   F     +++           +   G++  G 
Sbjct: 569 LPLSAVTTFLSGTESRVTTEALTLESAQAVPAGRSSDGP 607


>gi|313143572|ref|ZP_07805765.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
 gi|313128603|gb|EFR46220.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
          Length = 605

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 106/295 (35%), Gaps = 18/295 (6%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               +++ +  +      L             +  +  LN   + QV + V I  ++   
Sbjct: 218 TTSELKNKKDIIINKAAGLLTITATPKQIKRVESYLATLNNKIQKQVLIDVYIFNIQHSN 277

Query: 210 LKQIGFQHSIT---GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
            +  G   +     G+      +             GDF++       S   ++  L+  
Sbjct: 278 NQTYGIDWNEFYKLGNLLTLPPNAEGSNNALTGVNNGDFAISIFSQGVSINRIVEFLQTY 337

Query: 267 TAIRTLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVL 316
             +++++ P +  ++ Q A  + G           Q   +  S    + +  +   G++L
Sbjct: 338 GKVQSVSNPKVLTLNNQPAIISVGSVLRYFQNTTYQTTTQGTSIQNLSQTFPSVFAGILL 397

Query: 317 HFTPTVLSPGRI-----GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
             TP+V +   I      +    ++S           P+   ++  + V++  G  IVL 
Sbjct: 398 DVTPSVKNDKIILKINPSITKTKDISIENQTTALESPPNLSTKQLSSLVQVKDGEKIVLG 457

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           GL+     Q+   +P+L  IP++  LF   +  +E  E+ I  +P +V+  A   
Sbjct: 458 GLIDKTEGQILRKLPILGDIPLIKYLFSYKKNIKETQEMVIIISPHIVRLDAREQ 512


>gi|32471402|ref|NP_864395.1| protein transporter [Rhodopirellula baltica SH 1]
 gi|32443243|emb|CAD72074.1| conserved hypothetical protein-putative protein transporter
           [Rhodopirellula baltica SH 1]
          Length = 521

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/241 (20%), Positives = 88/241 (36%), Gaps = 12/241 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+  I  V  D   Q G          G  +   +  G     E     +  +   
Sbjct: 272 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 331

Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-------AT 305
           F +    +  L     +   A P + A  G+ A+     +  +      +          
Sbjct: 332 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 391

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
           ++   D G++L  TP +          + EVSE        ++    P    R   TTV 
Sbjct: 392 NIQKVDAGIMLDITPHIRGDEVTIDIEKAEVSEDVRNATPALSINQYPIINRRSVSTTVS 451

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G TIV+ GL++ +       IP LS++P +G LF+ ++    + E+ I  +P +V+ 
Sbjct: 452 VKDGKTIVIGGLVQRETVDRVNRIPGLSRLPGVGYLFQTTQRQTRDAEVVIFISPRIVRS 511

Query: 422 V 422
            
Sbjct: 512 T 512


>gi|285019414|ref|YP_003377125.1| general secretion pathway protein d [Xanthomonas albilineans GPE
           PC73]
 gi|283474632|emb|CBA17131.1| probable general secretion pathway protein d [Xanthomonas
           albilineans]
          Length = 772

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/323 (23%), Positives = 120/323 (37%), Gaps = 40/323 (12%)

Query: 149 GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           G V       +    +  ET          A  S + V+  L++    QV ++  +AEV 
Sbjct: 437 GSVTLEVQGDKVGVAAVEETNTLLVRSTPQAWRSIRDVVEKLDV-MPMQVHIEAQVAEVS 495

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKG 249
                Q G       S +  +   AA+  G     G                 G   V  
Sbjct: 496 LTGDLQYGVNWFFENSVNASTDGSAANGTGIGRGAGLPSAAGRKIWGDIAGKIGSDGVGW 555

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ 303
                +   V+ AL++ T ++ L  P++   +   A+   G +    + S +TG      
Sbjct: 556 TFLGRNAAAVITALDKVTNLKLLQTPSVFVRNNAEATLNVGTRIPINSTSINTGIGIDSS 615

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------------IGVNAGDMPSY 351
            +SV   D GV+L   P V   G + L I  EVS P             +   +      
Sbjct: 616 YSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVSTPSARPAACTAGTTNVVNTSACNVDI 675

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   + SG TI+LAGL+ D       G+P LSK+P++GALF      +   E+ 
Sbjct: 676 NTRRVKTEAAVQSGDTIMLAGLINDSTVDSSLGVPFLSKMPVIGALFGQKGQQKNRNEVI 735

Query: 412 IAATPFLVKPVAMRDLSRPDDHY 434
           +  TP +V+    ++     D Y
Sbjct: 736 VLLTPTIVR--DPQEARNLTDEY 756


>gi|226939985|ref|YP_002795058.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
 gi|226714911|gb|ACO74049.1| type II and III secretion system protein [Laribacter hongkongensis
           HLHK9]
          Length = 616

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 75/363 (20%), Positives = 128/363 (35%), Gaps = 72/363 (19%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
              N+ V   +  +V+ G        QR  +  +++L+Q                     
Sbjct: 266 PVRNVMVNPETGVLVVRGT-------QRQQKQVQSYLAQVRNASL--------------- 303

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV ++ TIAEV      Q G   S  G       +      G   + G      G +
Sbjct: 304 --RQVMIEATIAEVELTRDYQAGVDWSRIGDGKNWQFASNFSGNGLSQNAGNPAQYFGTV 361

Query: 252 D----------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                              S    +  LE     R L+ P L A++ QSA         Y
Sbjct: 362 GQVLQGSTTPAFTGLYRSGSLSAAIRLLEGFGRTRVLSSPKLMALNNQSAILKVVDNVPY 421

Query: 296 ------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
                           ++T  + + +   G+V++ TP +   GR+ L ++  ++      
Sbjct: 422 FTLKIKYEPGTTTNPPTTTYESELHSVPVGIVMNITPQIAPDGRVSLNVRPTITNITGFQ 481

Query: 344 -----------------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
                              G +P  +VR+ ++T+ L SG   VL GL++D I +   GIP
Sbjct: 482 RDPAVQLVLADKGASDPGLGLVPQLQVRELESTLRLQSGEIGVLGGLIQDKIDKDSNGIP 541

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFN 446
           LLS++P++GALF   + +  +TE+ +   P LV   +   L+              F   
Sbjct: 542 LLSQLPVVGALFGLRKESARKTELVVFLKPTLV---SQPSLTTDLSALRNALPDSRFLDG 598

Query: 447 RVN 449
           R +
Sbjct: 599 RQD 601


>gi|326575064|gb|EGE24993.1| type IV pilus secretin PilQ [Moraxella catarrhalis O35E]
          Length = 473

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G + + + +    + + T + Q      AN  +  ++  ++I   +QV ++  I    
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241

Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
            +  +++G      G +     G S+        + V+ GG                   
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWTMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             G+L+      +  L A++       ++ P +     Q+A  +SG Q  Y+  + S  +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  ++L  TP +   G+IGL++  +   PV         + +    +T V +  
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|254522160|ref|ZP_05134215.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
 gi|219719751|gb|EED38276.1| general secretion pathway protein D [Stenotrophomonas sp. SKA14]
          Length = 733

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/260 (23%), Positives = 101/260 (38%), Gaps = 23/260 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
           +V+  L++    QV ++  +AEV      + G       +  G   +             
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALTGDLKYGVNWFFDNAVLGQKLTGALGGVTLPAAAG 504

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             +     +  G   +       +   V+ AL++ T +R L  P++   +   A+   G 
Sbjct: 505 GSWSSFAGAVTGADGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------ 340
           +         T   ++  +SV   D GV+L   P V   G + L I  EVS         
Sbjct: 565 KVPINTTTVNTGVGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASDVPETC 624

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P    +K  T   + SG TI+LAGL+ D       GIP LSKIP++GALF  
Sbjct: 625 NPTERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDSATDGSSGIPGLSKIPVVGALFGQ 684

Query: 401 SRFNREETEIFIAATPFLVK 420
                  +E+ +  TP +V+
Sbjct: 685 KTRTSRRSEVIVLLTPTIVR 704


>gi|294666182|ref|ZP_06731437.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292604047|gb|EFF47443.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 668

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   +       +          V    +       +     +   V+  L++
Sbjct: 272 TRTNAVDVAAATGAAQTQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
              +QV ++  + E+     K++G Q  + G +       ++   A  G   ++     +
Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390

Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275
             G                                 +   F  ++ A++  T    L+ P
Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITL 510

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +P LGALFR+   NR++T + +   P +++  A          Y+   D + 
Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622


>gi|317407766|gb|EFV87693.1| hypothetical protein HMPREF0005_03214 [Achromobacter xylosoxidans
           C54]
          Length = 675

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 50/293 (17%), Positives = 90/293 (30%), Gaps = 31/293 (10%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF----SVKGVL 251
           V ++  I +V  + + ++G    +    S       A      +             G+ 
Sbjct: 308 VEIEAMIVDVNSEAISELGVNWGVNVGRSSIGYGDLALKPSGGLPVDSAAKLSPGTLGLS 367

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
              S    + AL+   A   L++P++       A                    +VT   
Sbjct: 368 LGTSLAARVRALQSRGAANILSQPSILTADNLGAMIDLSETFYI--SLRGERVATVTPVT 425

Query: 312 YGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            G  L  TP  +     G++ L +  E       V    +P+ R     T   +    T+
Sbjct: 426 VGTSLRVTPRYIAAAQGGQVELTVDIEDGSVQSEVEIDGLPTVRKSNISTLAVVGDQQTL 485

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-------- 420
           ++ G       +  + +PLL  IP+LG LF +     +  E      P LV         
Sbjct: 486 LIGGYNSSQNTEQVDKVPLLGDIPLLGTLFSSKSKTVQRRERLFLIRPRLVSINGVSVAA 545

Query: 421 ---------PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                    P     ++ P D       A+      + +I G      V+G+ 
Sbjct: 546 PANIVTASNPSFGVAVAAPWDEKPAASAAQF-----LERIQGGSGLRAVDGRR 593


>gi|9885640|gb|AAG01463.1|AF282857_12 hrcC gene product [Pantoea stewartii subsp. stewartii]
          Length = 677

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 71/468 (15%), Positives = 139/468 (29%), Gaps = 31/468 (6%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + +S+        Q   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPRYLSLVKRFSEQRQKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
              + AD  +H      +     G A ++  L+       ++               + +
Sbjct: 184 KYASVADRTIHYRDQTLVI---PGVATMLNELMNGKRAAPVSASGAEGTIGGADNAAMMQ 240

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                  R+   ++     G          +  +S    + +   +  +   ++   L+N
Sbjct: 241 NTQSLLARLSNHANNTNRPGDRDNNSVDDLSGRISADVRNNALLIRDDDKRREEYAQLIN 300

Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                Q  V +   I ++ R  L ++      T        S  +  G  FVS       
Sbjct: 301 KIDIPQNLVEIDAVIIDIDRTALNRLEANWQATLGGVTGGTSLMSGSGTLFVS------- 353

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D   F   + ALE       +A P++  +  Q A                     +
Sbjct: 354 ----DFKRFFADIKALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 407

Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
                G  L  TP  +       +++  ++ +  +  N     +   R    T   +   
Sbjct: 408 QPVTAGTSLQVTPRAVGHQDHASIQLVIDIEDGHVETNNDGQATGVKRGTVSTQALISEN 467

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G   ++  +    IPLL  IP LG LF ++R    + E     TP L+      
Sbjct: 468 RALVLGGFHVEESGERDRRIPLLGDIPWLGRLFTSTRHEISQRERLFILTPRLIGDQTDP 527

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIY--GPKEASEVEGQNYKGAIGF 471
                 D+     DA A    R + +      E +  +    +   GF
Sbjct: 528 TRYVSADNRQQLSDAMARVERRHSNVNLQDMVENALRDLAERQTPAGF 575


>gi|294625731|ref|ZP_06704351.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292599967|gb|EFF44084.1| general secretion pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 763

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 117/301 (38%), Gaps = 29/301 (9%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV      Q G     
Sbjct: 449 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGELQYGVNWYF 507

Query: 220 TGSSSGPSKSFAADFG--------GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
             + +  + +  A           G       +  V       +   V+ AL+  T +R 
Sbjct: 508 ENAVNAATAAGGAGLPSAAGRSIWGDISGTVTNGGVGWTFLGKNAAAVISALDTVTNLRL 567

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSP 325
           L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V   
Sbjct: 568 LQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRVTKD 627

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVLAGL 373
           G + L I  E+S P     A    +               R+  T   + SG T++LAGL
Sbjct: 628 GMVFLDIVQEISTPGARPQACTAAATTTVNSAACNVDINTRRVKTEAAVQSGDTMMLAGL 687

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           + D    +  G+P LSK+P++GALF     +    E+ +  TP +V+    ++     D 
Sbjct: 688 IDDSTTDISAGVPFLSKLPVVGALFGQKNKDTNRREVIVLITPTIVR--NPQEARNLTDE 745

Query: 434 Y 434
           Y
Sbjct: 746 Y 746


>gi|262273424|ref|ZP_06051238.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
 gi|262222402|gb|EEY73713.1| type IV pilus biogenesis protein PilQ [Grimontia hollisae CIP
           101886]
          Length = 578

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 70/424 (16%), Positives = 142/424 (33%), Gaps = 45/424 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDV--LVSDPTKADVVVHSPRT--- 86
                +      + +    ++ ++  +   + + + DV    +  T  +V     R    
Sbjct: 160 FQDIPVRSVLQMVAEHNGFNLVVSDTVQGSLTLRLDDVPWQKALDTILNVKGLDKRQTGN 219

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
           + L          I +    + +L          +     ++   A++    EM+  +  
Sbjct: 220 ILLVAPK------IELDEQERLVLEKRRQARELASLRSEVIQIKYANAVDLKEMLGGSDA 273

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G +  + +         T               K +++ L+I   DQV ++  I  V 
Sbjct: 274 EEGGISLLSERGSIAVDPRTNSLVIKDLSDNIEVVKSLIDSLDIP-VDQVEIEARIVTVD 332

Query: 207 RDILKQIGFQHSITGSSSGPSKS-----------------------------FAADFGGK 237
              L +IG +  +   +   +                                  + G  
Sbjct: 333 EGTLDEIGVRWGLNSQNGNFTMGGSIEGNWQHSDRIDVGADNEPDELMLDDLLNVNLGAI 392

Query: 238 FVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +     FSV  +      +  L AL+  +    ++ P L   + + A    G +  Y 
Sbjct: 393 SPNATSIAFSVANLGKDLLLDLELSALQAESRAEIISSPRLLTTNKRPAYIEQGTELPYL 452

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVR 354
             SSS  A   +     + L  TP +    ++ L +Q    +P   V    G+  +   +
Sbjct: 453 EASSSGAAAV-SFKKAVLSLSVTPQITPDNKLVLDLQVTQDKPAGTVKAGTGEAMAINTQ 511

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T V +  G T+VL G+ + ++ +  + IPLL  IP LG LFR +     + E+ I  
Sbjct: 512 RIGTQVLVNDGETVVLGGIYQHEMMEGVDKIPLLGDIPGLGQLFRRNYETTGKRELLIFV 571

Query: 415 TPFL 418
           TP +
Sbjct: 572 TPRV 575


>gi|269797724|ref|YP_003311624.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
 gi|269094353|gb|ACZ24344.1| type II and III secretion system protein [Veillonella parvula DSM
           2008]
          Length = 432

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V T+  + +   LSE                + ++  ++     QV L+ TI  + 
Sbjct: 165 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVCAID-KEPKQVQLEATIIAME 223

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 224 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 278

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ A++G++A    G +      S   G         + G+ L++TP + +
Sbjct: 279 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 338

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 339 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 397

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LFR+SR  ++  E+ +     +V
Sbjct: 398 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 432


>gi|307719942|ref|YP_003891082.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306978035|gb|ADN08070.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 502

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 57/272 (20%), Positives = 111/272 (40%), Gaps = 23/272 (8%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           S          +   + NL+    +    QV ++  I EV  +   Q+G    + G S  
Sbjct: 232 SGVLSVYDKKQNIDAISNLIKDVKKQFNKQVLIEAKILEVTLNKSHQLGINWDVVGKSVF 291

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                        ++     +V    +  +F  +++A+++   I T++ P +  ++GQSA
Sbjct: 292 SPGDTLNIQQSLGLTGAVAGTVNYSAN--NFNALINAIDQNGNIDTISNPRIKVLNGQSA 349

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDY----------GVVLHFTPTVLSPGRIGLRIQTE 335
             +SG    Y      T   + T +            GV +  TPTV+  GRI L +   
Sbjct: 350 IISSGKLVPYWEKQVDTSQGTSTNNILVTYNRRDVLDGVTMGVTPTVMENGRIMLNVTPI 409

Query: 336 VSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            S            GV+    P   +++A T +   +   +++ GL+   I++ K+ +P 
Sbjct: 410 SSSIESEKVYHDDQGVSVATAPIINIKEAGTIIYAKNNDLVLIGGLMSTSIKKNKQEVPF 469

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LS +P++G+LF      +E+ E+ I     ++
Sbjct: 470 LSNLPLVGSLFTQVNNTKEKKELVILLRLKVI 501


>gi|313892802|ref|ZP_07826383.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
 gi|313442733|gb|EFR61144.1| bacterial type II and III secretion system protein [Veillonella sp.
           oral taxon 158 str. F0412]
          Length = 429

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 62/275 (22%), Positives = 117/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  ++ T+  + +   LSE                + ++  ++     QV L+ TI  + 
Sbjct: 162 LKAVMGTVVKNDKMAVLSEQNEVIMHLTNGEKRRVENLVRAID-KEPKQVQLEATIIAME 220

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 221 QSYAKEQGFRWS-----WLSLTGHGDDKTNSYGAVTFGKTPSGEAYKFFVKPELSLMESS 275

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ A++G++A    G +      S   G         + G+ L++TP + +
Sbjct: 276 GKAVLIAKPSIMALNGETAHILIGERIPVVEESEVNGERKRSTRYEEVGIKLNYTPIITA 335

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 336 DGGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQQGEVLVIGGLMDNRDQHQIQK 394

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+L  IP+LG LFR+SR  ++  E+ +     +V
Sbjct: 395 VPILGDIPLLGKLFRHSRKTKDSIEMLVLVRATVV 429


>gi|294793490|ref|ZP_06758627.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
 gi|294455060|gb|EFG23432.1| bacterial type II and III secretion system protein [Veillonella sp.
           3_1_44]
          Length = 412

 Score =  157 bits (397), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 116/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V T+  + +   LSE                + ++  ++     QV L+ TI  + 
Sbjct: 145 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 203

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 204 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 258

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ A++G++A    G +      S   G         + G+ L++TP + +
Sbjct: 259 GKAVLIAKPSIMALNGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 318

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 319 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 377

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LFR+SR  ++  E+ +     +V
Sbjct: 378 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 412


>gi|294638088|ref|ZP_06716347.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
 gi|291088796|gb|EFE21357.1| protein transport protein HofQ [Edwardsiella tarda ATCC 23685]
          Length = 400

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/420 (19%), Positives = 151/420 (35%), Gaps = 34/420 (8%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-----VIILQVP 63
           + ++ + L + +    + P     + A +      + +   +++ L+        +  V 
Sbjct: 3   WRLLVLLLLACSARARETPLTVWFDHAPLRTVLQAVAEFAGLNLILSDELNIAATVHIVQ 62

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG--KQMLNLDILIERDIA 121
                +L +     D+ V +   + L                          +L   D  
Sbjct: 63  TPWPQLLDALAEMYDLSVVTRDGILLVQSRERAQRRAPPAARPAAHLRSQRLVLHHADAL 122

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            +E +LR+             D + + G V         V    T            +S 
Sbjct: 123 TVEKSLRQR-----------RDLLGVGGSV---------VADVRTNALLLRTETTRLASV 162

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +  L++    Q+ L   I  + ++ L+++G +     +S G  +    +    F + 
Sbjct: 163 AEWVTQLDVPLP-QIQLAAHIVSMSQEGLRELGIRWRNGTASEGEHEVRRREDEAYFSAG 221

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                    +   +    L ALER   +  +A P L A  GQ AS   G +  Y   +  
Sbjct: 222 ----IQVAHIGGQALAMTLAALERQDKVAIIASPQLMAAHGQMASIKQGSELPYAVSNGE 277

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTT 359
            G +++   +  + +  TP VL+  RI L +Q   + P   +     +  +   ++  T 
Sbjct: 278 RGVSTMEFKEAVLGMSVTPRVLADERIELALQITQNMPGRLVRQGDSEALAIDKQEISTQ 337

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V LP+G T VL G+ +   Q   EG P L+ IP+LG L R      E  E+ I  TP L+
Sbjct: 338 VTLPNGDTAVLGGIFQYQRQDGYEGFPWLASIPLLGHLLRRDSQRSERRELVIFITPTLL 397


>gi|289663703|ref|ZP_06485284.1| general secretion pathway protein D [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 768

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/308 (22%), Positives = 112/308 (36%), Gaps = 36/308 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV        G     
Sbjct: 447 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGDLSYGVNWYF 505

Query: 220 TGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVLD------------RFSFETVLHAL 263
             S    +   +       G    S  G      +                +   +++AL
Sbjct: 506 ENSVNAAADSATNGTGIGVGAGLASAAGRNIWGDIAGKVGEGGLAWSFLGKNAAAIINAL 565

Query: 264 ERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           ++ T +R L  P++   +   A+             +   + S +  +SV   D GV+L 
Sbjct: 566 DKVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVILK 625

Query: 318 FTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSGG 366
             P V   G + L I  EVS P                A        R+  T   + SG 
Sbjct: 626 VRPRVTKDGMVFLDIVQEVSSPGDRPTACQSATATINAAACNVDINTRRVKTEAAVQSGD 685

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           TI+LAGL+ D       G+P LSK+P++GALF     N    E+ +  TP +V+    ++
Sbjct: 686 TIMLAGLINDSTTDGSNGVPFLSKLPVVGALFGTKSRNSSRREVIVLITPSIVR--NPQE 743

Query: 427 LSRPDDHY 434
                D Y
Sbjct: 744 ARNLTDEY 751


>gi|15805800|ref|NP_294498.1| general secretion pathway protein D [Deinococcus radiodurans R1]
 gi|6458483|gb|AAF10350.1|AE001932_2 general secretion pathway protein D, putative [Deinococcus
           radiodurans R1]
          Length = 740

 Score =  157 bits (397), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 76/427 (17%), Positives = 154/427 (36%), Gaps = 41/427 (9%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L ++     ++ P+ +    V+N +  ++     +   +++   +     VQ V     
Sbjct: 334 ALLAAQYPTLRVTPVGQTGQLVLNGAQAQLDTALALLEQVDRPAPVAESRTVQRVF---- 389

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +     +     G     L       +L    +   D       +   + ++
Sbjct: 390 -----QLVNASAEEVKATLEGTLARDLTADSNNDVLPNVPVTATDANGNTTVVS--VPNA 442

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS---GRNQYANSSSKKVMNLLNIA 191
             +              +T  ++Q+A  +++   +     G  +     ++ V  L  + 
Sbjct: 443 LGKTANQGTANAQAQTAQTPANTQQATLIADKRTNSLIVRGTPEQVAQVAELVPQLDQV- 501

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              Q+ ++V I EV    L+ +G     T      + S        F             
Sbjct: 502 -VPQINVQVRIQEVNERALQSLGLNWRATFGGFNVAVSGGTGLAATFNPTQSFL------ 554

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYKT 297
             F+    L ALE     R + +  +T  SGQ               A+ +       + 
Sbjct: 555 -GFNIFPTLTALETQGLTRRVYDGNVTMQSGQRSLSATGGAQNASSGAAASVKSGGRLEI 613

Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
              S     V   DYG+ L F +P V   G I LRI+ +V++P   + A  +P+   +  
Sbjct: 614 NIPSAAGNIVRQIDYGLNLDFFSPQVAPDGTITLRIRGQVNQPATAITADSLPNLIDFTN 673

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +A +T+   +G TI+++GLL       + G+P LS +P +GA F   R  + ++++ + 
Sbjct: 674 SEAQSTITFKNGQTILMSGLLGSTETTNRSGVPFLSSLPGVGAAFGEKRTEKTQSQLLVI 733

Query: 414 ATPFLVK 420
            T  +VK
Sbjct: 734 ITGTVVK 740


>gi|21244259|ref|NP_643841.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
 gi|21109904|gb|AAM38377.1| general secretion pathway protein D [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 763

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 118/305 (38%), Gaps = 32/305 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV        G     
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGALSYGVNWYF 506

Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
             + + P  +  +       + G            D  V       +   ++ AL+  + 
Sbjct: 507 ENAVTTPFNADGSGGPALPSAAGRNIWGDIAGRVTDGGVAWTFLGKNAAAIISALDTVSN 566

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
           +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V
Sbjct: 567 VRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSYSSVQYIDTGVILKVRPRV 626

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
              G + L I  E+S P     A    +               R+  T   + SG T++L
Sbjct: 627 TKDGMVFLDIVQEISTPGARPAACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTMML 686

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+ D       G+P LSK+PI+GALF     N +  E+ +  TP +V+    ++    
Sbjct: 687 AGLIDDSTTNGSVGVPFLSKLPIVGALFGRKTQNTDRREVIVLITPSIVR--NPKESRDL 744

Query: 431 DDHYS 435
            D Y+
Sbjct: 745 TDEYA 749


>gi|9625382|ref|NP_039614.1| gene IV product [Enterobacteria phage I2-2]
 gi|138048|sp|P15420|G4P_BPI22 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14922|emb|CAA32520.1| gene IV product [Enterobacteria phage I2-2]
          Length = 428

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/450 (18%), Positives = 157/450 (34%), Gaps = 54/450 (12%)

Query: 5   QRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV 64
            +TFF    + LF+     A   P+   N+ V +       K         K +I+  P 
Sbjct: 1   MKTFFAKFIVALFAFTYFSAFAEPVTLNNSPVRSFVQWYSSKT-------GKSVIVN-PD 52

Query: 65  DVQDVLVSDPTKADV-------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
              ++ V +    +         V +   + +   N    +  L     +         E
Sbjct: 53  VKGNITVFNADVNNANIDDFFKSVLNANGLVVVAGNPAVVSTPLTKLASQPSNEETYDDE 112

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D    E   +         + + +  V       T   S   + L++ F+     N   
Sbjct: 113 SDGVAYEAVPQSAAPAVPADLTVRNFNV-------TRVRSSDVLPLAKIFVDS---NGGG 162

Query: 178 NSSSKKVMNLLNIAGEDQVT------------------LKVTIAEVRRDILKQIGFQHSI 219
           N       N L ++G  QV                   ++  + E        + F  ++
Sbjct: 163 NVVDYPGNNSLVVSGSAQVMPALSDFITSIDVAREQVLIQSLMFETSVSNGVDLSFALAL 222

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                       +  G    + GG F   G+ +       L A++  +  + ++ P +  
Sbjct: 223 ASGGKVAGGFNTSALGTALSTAGGSF---GIFNGNILALSLQAVQSDSNSKVISTPRILT 279

Query: 280 ISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            SGQS   + G    + T   +           ++   D GV L  TP V+  G++ L I
Sbjct: 280 QSGQSGYISVGQNVPFVTGKVTGEAASVNNPFQTIERRDVGVSLKVTPVVMGNGQLVLTI 339

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
            T+         A D+     R+  TTV++  G T++L GL+  +       +P +SKIP
Sbjct: 340 DTKADSLSNQAIASDI-ITNQRQIQTTVQIKDGQTLLLGGLISSNQFDSDRSVPFMSKIP 398

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++G LFR+   ++++  +F+  T  +++ +
Sbjct: 399 LIGWLFRSHSDSKDDRTMFVLLTAHVIRAL 428


>gi|326562497|gb|EGE12814.1| type IV pilus secretin PilQ [Moraxella catarrhalis 103P14B1]
 gi|326572679|gb|EGE22668.1| type IV pilus secretin PilQ [Moraxella catarrhalis CO72]
 gi|326574278|gb|EGE24226.1| type IV pilus secretin PilQ [Moraxella catarrhalis 101P30B1]
          Length = 473

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/296 (19%), Positives = 121/296 (40%), Gaps = 29/296 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G + + + +    + + T + Q      AN  +  ++  ++I   +QV ++  I    
Sbjct: 185 VRGTLLSERGTVTVDKRTNTLIIQDVPASVANIKA--LIERIDIP-VEQVMIEARIVSAN 241

Query: 207 RDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGG----------------DFS 246
            +  +++G      G +     G S+        + V+ GG                   
Sbjct: 242 ENFGRKLGVSFGAHGQNGKVHYGGSQGSLWAMRQEGVAAGGHQNSHLNVDLGVDNAMGRI 301

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             G+L+      +  L A++       ++ P +     Q+A  +SG Q  Y+  + S  +
Sbjct: 302 AFGLLNLPDIILDLELSAMQAENQGEVISTPKVLTADKQTARISSGLQIPYQETTHSGAS 361

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  ++L  TP +   G+IGL++  +   PV         + +    +T V +  
Sbjct: 362 T-TKFKEASLILEATPNITPDGKIGLKLNIKNGNPVPT---LGHIAIQEDAIETNVIIED 417

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ +    +    +P L  +P+LG LFR+     +++E+ I  TP LV+
Sbjct: 418 GQTVVLGGIYRTSQNEGANKVPRLGDMPVLGRLFRHDSKAHDKSELLIFITPKLVR 473


>gi|32266614|ref|NP_860646.1| hypothetical protein HH1115 [Helicobacter hepaticus ATCC 51449]
 gi|32262665|gb|AAP77712.1| conserved hypothetical protein [Helicobacter hepaticus ATCC 51449]
          Length = 533

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 52/268 (19%), Positives = 104/268 (38%), Gaps = 20/268 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAADFGGKF 238
           ++ +  LN   + QV + V I  V+    +  G   +     G+             G  
Sbjct: 241 ERYIAQLNDKIQKQVLIDVHILNVQHTDNQTYGIDWNEFYKLGNIMTLPAEHQNTSSGSI 300

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            S GG F++       +   ++  L+    +++++ P +  ++ Q A  + G    Y   
Sbjct: 301 DSSGGRFAINIFSQGVNINRIVEFLQTYGKVQSISNPKVLTLNNQPAIISVGSVLRYSQN 360

Query: 299 SS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIG 342
           ++             + +  +   G++L  TP+ +  G+I L+I        ++S     
Sbjct: 361 TTYQTTTQGTSVQNNSQAFPSVFAGILLDVTPS-IKDGKIILKINPSITKTKDISIENQT 419

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +     P+   ++  + V+L  G  IVL GL+     Q    IP+L  IP +   F   +
Sbjct: 420 IALNAPPNLSTKQLSSLVQLKDGEQIVLGGLIDKTEGQTTRKIPILGDIPFVKYFFSYKQ 479

Query: 403 FNREETEIFIAATPFLVKPVAMRDLSRP 430
             +E  E+ I   P +V+  A    + P
Sbjct: 480 NIKETQEMVIIIAPHIVRLDANETAASP 507


>gi|310923243|emb|CBW54709.1| YscC, T3SS outer membrane ring component, local similarity to
           E.coli GspD (T2SS) and to iron transporters,PMID 9427408
           [Yersinia enterocolitica (type O:8)]
          Length = 607

 Score =  157 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   +      S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
              +  K          +    YG +L  TP VL+ G    I L +  E        +  
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|222099578|ref|YP_002534146.1| ComE protein [Thermotoga neapolitana DSM 4359]
 gi|221571968|gb|ACM22780.1| ComE protein [Thermotoga neapolitana DSM 4359]
          Length = 1282

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/346 (19%), Positives = 131/346 (37%), Gaps = 37/346 (10%)

Query: 79   VVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFIADSNIR 137
            + + S    YLF    G   V ++    + +       I  +   ++  +        + 
Sbjct: 971  LDLVSQNYGYLFDLKNG---VYVVSRPKQDLAKRYFYDIPHNFDQIKALIE--FYGGTVY 1025

Query: 138  VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
            V+ +++ +V+ G+  TI                            +++  L      QV 
Sbjct: 1026 VDSLNNFMVVTGISETI-----------------------KKELDRIVENLK-KPTKQVE 1061

Query: 198  LKVTIAEVRRDI--LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
            +   I +        K++G Q S TG     S +  +     ++      +    +    
Sbjct: 1062 ISAKIVDKSLIDMVTKEMGLQLSGTGVDLSSSGASISFSVTDYLDFEKVIN---EILNSP 1118

Query: 256  FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
                    +  T    LA P +   SG+ A    G +  Y T ++  G   V   + G+ 
Sbjct: 1119 LSLQFSDQKSNTLDDILASPRIVTTSGKEAKILIGDRIPYVTDTNGDGTPEVQFLETGIE 1178

Query: 316  LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            L  TP V S   I L +  + SEP   +N  ++P  R R+A T + + +  TIV+ GL++
Sbjct: 1179 LSITPFVRSDDTIELDLFVKASEPGNYIN--EVPGERTREATTHLIVKNNSTIVIGGLIR 1236

Query: 376  DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +     +  +P    +P++G  FR    ++E+ ++ I  T  +V+P
Sbjct: 1237 EVTNMSESKLPFFGDLPVIGQFFRTKSESKEKRDLMIFVTVRVVEP 1282


>gi|240141999|ref|YP_002966509.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
 gi|240011943|gb|ACS43168.1| putative General secretion protein D [Methylobacterium extorquens
           AM1]
          Length = 693

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 65/239 (27%), Positives = 108/239 (45%), Gaps = 13/239 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS-----EGGDFSV 247
             QV ++ TIAEVR +   + G +        G   S  + FG    S       G+ ++
Sbjct: 424 PTQVLIEATIAEVRLNEALRHGVRWYFQAGGLGQGASMGSGFGTSGRSVTGQGSAGEIAL 483

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-- 305
              L   + +  + ALE  T +  ++ P LT +  Q+A+   G Q    T S+ +     
Sbjct: 484 TYSLGLANAKLAISALESVTDVEIVSSPALTVLDNQTATLKVGEQVPIATRSARSVVNAD 543

Query: 306 -----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTT 359
                 +   D GV+L  TP V + G + L I+ E S+ V    +  D P+ R+R+  +T
Sbjct: 544 APLVNDIEMKDTGVILQVTPRVNAGGLVMLDIKQEASDVVPTTTSNLDSPTIRLRQITST 603

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + + SG  IVL G+++    +   G+P L  IP+LG    N    ++ TE+ I   P +
Sbjct: 604 IAVKSGAEIVLGGIIQRGRHRGAGGVPFLRDIPLLGTALNNIDSGQDRTELVIIIRPTV 662


>gi|297538460|ref|YP_003674229.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
 gi|297257807|gb|ADI29652.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera sp. 301]
          Length = 589

 Score =  157 bits (396), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 67/388 (17%), Positives = 116/388 (29%), Gaps = 56/388 (14%)

Query: 88  YLFGKNVGQ--ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD-- 143
           Y+ G+  G     V                            R  +  S+I     +D  
Sbjct: 164 YIVGQRKGSSDTRVTSGSVSDGSSSGQSTGSTTTTNSSGSANRASMISSSIATTTNNDFW 223

Query: 144 ---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV 200
              T  L+G+V       R V   ++ +           + +  + L+ +  E QV L+ 
Sbjct: 224 KDLTDSLNGIVGNENGH-RVVVNVQSGVIMVRAMPAEVRNVEAFLRLMQVTIERQVILEA 282

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSK--------------------------SFAADF 234
            I  V+ +   Q G   S+ G S   +                           S     
Sbjct: 283 KIMNVQLNDQSQSGVNWSVFGKSGSNTGIVGNLNAKTTLGRAGNGDVTSGDLSASSGNVI 342

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                +  G       L   +F  +L  LE    ++ L+ P +  I+ Q A    G    
Sbjct: 343 ANTATTALGGPLFAVALQGANFAALLSFLETQGDVQVLSSPRIATINNQKAVLKVGTDEF 402

Query: 295 YKTVSSST-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
           + T  SS               ++     G+ L  TP +     I L +   +S+     
Sbjct: 403 FVTGISSNTTASTGATTTSPEVTLQPFFSGIALDVTPQIDKDDNIILHMHPSISQVTTVN 462

Query: 344 NAGDMPSY-----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
              ++               V + D+ V    G  I + GL+ +     K  +P L  I 
Sbjct: 463 KQLNLGGVSGNINLPLASSNVSETDSIVRTHDGRVIAIGGLMTESSISNKSKVPGLGDIK 522

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
            +G  FR       +TE+ I     +V+
Sbjct: 523 GVGNAFRQKGSTSSKTELVILLKATVVQ 550


>gi|282848997|ref|ZP_06258386.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
 gi|282581272|gb|EFB86666.1| bacterial type II and III secretion system protein [Veillonella
           parvula ATCC 17745]
          Length = 440

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 64/275 (23%), Positives = 116/275 (42%), Gaps = 9/275 (3%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V T+  + +   LSE                + ++  ++     QV L+ TI  + 
Sbjct: 173 LKNVVGTVVKNDKMAVLSEQNEVIMHLTSGEKRRVETLVRAID-KEPKQVQLEATIIAME 231

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   K+ GF+ S              D    + +     +  G   +F  +  L  +E +
Sbjct: 232 QSYAKEQGFRWS-----WLSLTGHGEDKTHSYGAVTFGKTPTGEAYKFFVKPELSLMESS 286

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTVLS 324
                +A+P++ AI+G++A    G +      S   G         + G+ L++TP + +
Sbjct: 287 GKAVLIAKPSIMAINGETAHILIGERIPVIEESEVNGERKRSTRYEEVGIKLNYTPIITA 346

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              +  +I  EVS P I V+         R+A T V L  G  +V+ GL+ +  Q   + 
Sbjct: 347 DDGVDAKIHAEVSTP-IMVSEMKAYKISTRQAHTRVRLQPGEVLVIGGLMDNRDQHQIQK 405

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           IP+L  IP+LG LFR+SR  ++  E+ +     +V
Sbjct: 406 IPILGDIPLLGKLFRHSRKTKDSIEMLMLVRATVV 440


>gi|218294935|ref|ZP_03495789.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
 gi|218244843|gb|EED11367.1| type II and III secretion system protein [Thermus aquaticus
           Y51MC23]
          Length = 751

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 11/278 (3%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G       +   V    T            +  + ++  L+ A   QV L+V I EV+ +
Sbjct: 483 GQSGNPTPTATVVADERTNTLIVTGTAEDLALVEGLIPRLDQAVP-QVNLRVRIQEVQSN 541

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           + + +G + +     +  +    +     F S          L   +    L AL+R   
Sbjct: 542 LTRSLGLKWNTIAGGNVVASILDSGLSLIFDS-------TRSLAALNIVATLDALQRQGL 594

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            R L +   T +S Q+A   SG   L + V  +         D G+++  TP + + G+I
Sbjct: 595 SRALRDVNQTVLSNQTARLQSGETFLIRRVVENRVERV--PFDIGIIVEVTPQITADGQI 652

Query: 329 GLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            L I+ EVS  V      GD+  +  +   TT+ +  G T+VL GL   +  Q  +G+P+
Sbjct: 653 LLNIRAEVSGNVQRNPVDGDVDRFTKQVVTTTLRVRDGQTVVLGGLTSQENTQTVQGVPI 712

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L  IP++G LF+       + E+ +  T  ++K  A R
Sbjct: 713 LMDIPLIGELFKQRTGETTDRELLVVITADILKETAER 750


>gi|294627648|ref|ZP_06706230.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598000|gb|EFF42155.1| type II secretory pathway protein D [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 668

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 73/413 (17%), Positives = 145/413 (35%), Gaps = 44/413 (10%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVI-LIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            DP     VV +   +    +  G  +V+ L     +Q+L +   +       E    + 
Sbjct: 212 GDPALVQRVVRTAVDLDGRAERRGDVSVVRLQHASAEQLLPVLQQLVGQTPGNEAQAGQD 271

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + + V   +       +          V    +       +     +   V+  L++
Sbjct: 272 TRTNAVDVAAATGAAQAQVIAPAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV 331

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFS 246
              +QV ++  + E+     K++G Q  + G +       ++   A  G   ++     +
Sbjct: 332 -HREQVLVEAIVVEISDTAAKRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGT 390

Query: 247 VKGV-------------------------------LDRFSFETVLHALERATAIRTLAEP 275
             G                                 +   F  ++ A++  T    L+ P
Sbjct: 391 RSGNAEDDSVLEQARNVAAQSLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTP 450

Query: 276 TLTAISGQSASFTSGGQHLYKTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
           ++  +  + A    G +    T       +     ++   D GV L   P + + G I L
Sbjct: 451 SIMTLDNEQARILVGQEVPITTGEVLGAANDNLFRTIQRQDVGVELEVRPQINTAGGITL 510

Query: 331 RIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            I+ EVS     V+A      +  R+ +T V + +G  + L GLL  + +Q  E +PLL 
Sbjct: 511 AIKQEVSAIAGPVSAQSSELVFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLG 570

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
            +P LGALFR+   NR++T + +   P +++  A          Y+   D + 
Sbjct: 571 DVPGLGALFRHKSRNRDKTNLMVFIRPTIIRD-AADAQRMTAPRYNDLRDRQL 622


>gi|10955572|ref|NP_052413.1| secretin YscC [Yersinia enterocolitica]
 gi|332163594|ref|YP_004424936.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|267564|sp|Q01244|YSCC_YEREN RecName: Full=Yop proteins translocation protein C; Flags:
           Precursor
 gi|155552|gb|AAC37020.1| yscC [Yersinia enterocolitica]
 gi|4324359|gb|AAD16836.1| secretin YscC [Yersinia enterocolitica W22703]
 gi|318608189|emb|CBY78163.1| type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667824|gb|ADZ44467.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 607

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/324 (17%), Positives = 113/324 (34%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   +      S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQARVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDQSNIASNGALGSLVDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
              +  K          +    YG +L  TP VL+ G    I L +  E        +  
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP +GALFR      
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYIGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|166713403|ref|ZP_02244610.1| general secretion pathway protein D [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 766

 Score =  156 bits (395), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 68/304 (22%), Positives = 119/304 (39%), Gaps = 32/304 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          + +S + V+  L++    QV ++  +AEV      Q G     
Sbjct: 449 VSAVAETNTLLVRSTPQSWASIRDVIEKLDV-MPMQVHIEAQVAEVNLTGQLQYGVNWYF 507

Query: 220 TGSSSGPSKSFAADFGGKFVSEG-----------GDFSVKGVLDRFSFETVLHALERATA 268
             + + P  +          + G            +  V       +   ++ AL++ T 
Sbjct: 508 ENAVTTPFDANDNGGPALPSAAGRNIWGDIAGSVTNTGVGWTFLGKNAAAIISALDQVTN 567

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTV 322
           +R L  P++   +   A+   G +    + S +TG       +SV   D GV+L   P V
Sbjct: 568 LRLLQTPSVFVRNNAEATLNVGSRIPINSTSINTGLGSDSSFSSVQYIDTGVILKVRPRV 627

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPS------------YRVRKADTTVELPSGGTIVL 370
              G + L I  E+S P    +A    +               R+  T   + SG TI+L
Sbjct: 628 TKDGMVFLDIVQEISTPGARPDACTAATTTTVNSAACNVDINTRRVKTEAAVQSGDTIML 687

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL+ D       G+P+LSK+P++GALF     +    E+ +  TP +V+    ++    
Sbjct: 688 AGLIDDSTTDGSSGVPMLSKLPVVGALFGRKTRDTRRREVIVLITPSIVR--NPQEARNL 745

Query: 431 DDHY 434
            D Y
Sbjct: 746 TDEY 749


>gi|148259896|ref|YP_001234023.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
 gi|146401577|gb|ABQ30104.1| general secretion pathway protein D [Acidiphilium cryptum JF-5]
          Length = 756

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +   N+S + ++  L+I    +V +  TIAEV  +   + G Q            S   
Sbjct: 456 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 514

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    G   +  G          + AL+  T ++ L+ P L   +G++A+   G  
Sbjct: 515 TAALNQSFPGFVLAGHGADGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 571

Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
             Y + +S +  T+       V   + GV+L  TP + S G + L +  +VS   P +  
Sbjct: 572 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 631

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P++  R   ++V +  G TI LAGL+ D++Q+   G+P L  +P+LG LF     
Sbjct: 632 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 691

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           +R   E+ +  TP +V            D  ++  D +    N  N              
Sbjct: 692 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 743

Query: 464 NYKGA 468
           + + A
Sbjct: 744 DPQAA 748


>gi|194364334|ref|YP_002026944.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
 gi|194347138|gb|ACF50261.1| general secretion pathway protein D [Stenotrophomonas maltophilia
           R551-3]
          Length = 733

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 63/260 (24%), Positives = 106/260 (40%), Gaps = 23/260 (8%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF-----------A 231
           +V+  L++    QV ++  +AEV  +   + G       + +G + +             
Sbjct: 446 EVIEKLDV-MPLQVHIEAQVAEVALEGDLKYGVNWFFDNAVAGRALTGALAGVTLPAAAG 504

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             +     +  G   +       +   V+ AL++ T +R L  P++   +   A+   G 
Sbjct: 505 GSWSSLAGAATGGEGLGWAFTGHNGAAVVSALDKVTDVRLLQTPSVFVRNNAEATLNVGD 564

Query: 292 QHLYKTVSSSTG-----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
           +    T + +TG      +SV   D GV+L   P V   G + L I  EVS         
Sbjct: 565 KVPINTTTVNTGIGTSSYSSVQYIDTGVILKVRPRVTRDGTVFLDIVQEVSSASNVPENC 624

Query: 342 -GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P    +K  T   + SG TI+LAGL+ D       GIP LS+IP++GALF  
Sbjct: 625 NPQERNCNPRISTKKLSTEAAVQSGDTIMLAGLITDTGTDGSSGIPGLSRIPVVGALFGQ 684

Query: 401 SRFNREETEIFIAATPFLVK 420
                  +E+ +  TP +V+
Sbjct: 685 KSRTSRRSEVIVLLTPSIVR 704


>gi|90020782|ref|YP_526609.1| MSHA biogenesis protein MshL [Saccharophagus degradans 2-40]
 gi|89950382|gb|ABD80397.1| type II and III secretion system protein [Saccharophagus degradans
           2-40]
          Length = 543

 Score =  156 bits (395), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 23/299 (7%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            + L  +V    + +  V   +  L          S+ ++ ++   ++   QV L+  I 
Sbjct: 219 KLTLSAIVGGEANGRNVVVNPQAGLVVVRALPSEISAVREFLDRSELSVRRQVILETKIV 278

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
           EV+ +   Q G   +        +K+   F         SE        +        +L
Sbjct: 279 EVKLNDGFQAGVNWNEIRGQMLLTKNVETFDVPVDIVSASENVGEIFSSIFRIGDISQLL 338

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----------SSSTGATSVTT 309
             LE    ++ L+ P ++ ++ Q A    G    + T            ++S     +T+
Sbjct: 339 SLLETQGNVQVLSSPRVSTVNNQKAVIRVGSDEFFVTGISSQTTSTAASTTSAPNIELTS 398

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTV 360
              G+ L  TP +   G + L +   VSE         + + +         VR++D+ V
Sbjct: 399 FFSGISLDVTPQIADNGDVILHVHPIVSEVTDQNKDITLGNEKFSLPLALREVRESDSIV 458

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              SG  IVL GL+K+ +  +    P L  +P+L  LFR      E+TE+ I   P +V
Sbjct: 459 RAQSGQIIVLGGLMKEKLNDVYSKRPGLGDVPVLNTLFRKRSKVSEKTELVILLRPIVV 517


>gi|308095101|ref|ZP_05903504.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
 gi|308085930|gb|EFO35625.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus Peru-466]
          Length = 624

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 219 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 338

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 517 VRMFIIEPRIV 527


>gi|329890282|ref|ZP_08268625.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
 gi|328845583|gb|EGF95147.1| general secretion pathway protein D [Brevundimonas diminuta ATCC
           11568]
          Length = 698

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 102/314 (32%), Gaps = 39/314 (12%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
            V                            +  +V+  L++    QV ++  + E+    
Sbjct: 319 TVTATGQRATIARFPGANALVISGPADLQRTLTEVIRQLDVR-RQQVLIEAIVVELSDKA 377

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV------------------- 250
           ++ +G Q  +     G   +  +D     V   G  +   +                   
Sbjct: 378 VRDLGVQW-LMAGEQGVGLTNYSDRAAPLVPIAGGAAAGQLDKDDPLRERLQNLALNSLL 436

Query: 251 ------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                            F  +++A +       L  P++  +  + A+F  G +    T 
Sbjct: 437 GANGFVGGAGGKWGDGLFGFIINAAKTDAGSNLLQTPSIMTLDNEEATFLVGQEVPITTG 496

Query: 299 S-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYR 352
                 +S   T+    D GV L   P + + G I L ++ EVS       +  +     
Sbjct: 497 QTILDGNSNPFTTTERKDIGVRLTVRPQINAGGSITLTLRQEVSSINGLLTSGANDLILD 556

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R+ +TT+ +  G   V  GLL  +       +P L  IP +G LFR++   R  T + +
Sbjct: 557 KRELETTLVVDDGDIAVAGGLLDQNDGLETSKVPGLGDIPGVGVLFRSTSRERGRTNLMV 616

Query: 413 AATPFLVKPVAMRD 426
              P +++  A   
Sbjct: 617 FLRPTILRTTADAQ 630


>gi|313199856|ref|YP_004038514.1| pilus (msha type) biogenesis protein mshl [Methylovorus sp. MP688]
 gi|312439172|gb|ADQ83278.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. MP688]
          Length = 603

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +   +   ET +         +   ++ ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 282 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 341

Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            +  G     + S          G   + G                 L  L++    + L
Sbjct: 342 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 401

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319
           + P L  ++ Q+A        +Y T+ S              +  T+  T   GVV+  T
Sbjct: 402 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 461

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368
           P +   G++ + ++  +S  V  VN  +           +P  +VR+ ++ + + SG T 
Sbjct: 462 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 521

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   P +++
Sbjct: 522 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 573


>gi|308094808|ref|ZP_05891872.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
 gi|308093421|gb|EFO43116.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AN-5034]
          Length = 628

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 223 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 342

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 460

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 521 VRMFIIEPRIV 531


>gi|146338379|ref|YP_001203427.1| putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
 gi|146191185|emb|CAL75190.1| Putative general secretion pathway protein D [Bradyrhizobium sp.
           ORS278]
          Length = 780

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 124/353 (35%), Gaps = 36/353 (10%)

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMV 151
             G          G    N+ ++  R         +  +   S  R        ++ G+ 
Sbjct: 404 AAGTTASTGF--SGASQANIGVVANRGFNGTPPPTQVGLDGGSEARASSAGGKPLMDGVR 461

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            T       + +     +                       + QV +  TIAEV  +   
Sbjct: 462 ITPDVVNNTLLIYADRENYRIIEATLRQCD---------RPQLQVAIDATIAEVTLNDNL 512

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--------------- 256
             G Q  +T  + G      +       S     +        +F               
Sbjct: 513 TYGVQAYLTSKNLGLRPDQGSLLNTTSTSAPATVASAAGTITNAFLSRAFPGFNFLIGSE 572

Query: 257 ---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
                +L AL   T ++ L+ P+L  I  Q+A+   G Q    T S++      T   ++
Sbjct: 573 SQPSAILSALHTVTDVKVLSNPSLVVIDNQAATLQVGDQVPVSTGSATVLTTNNTVVNTI 632

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G++L   P V   G + L I+ E+S           P+   RK  ++V + SG T
Sbjct: 633 DYRNTGIILRVAPRVNENGNVRLEIEQEISNVSPQTANSLTPTVAQRKVKSSVAVASGQT 692

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++LAGL+ +  Q  + G+P + +IP  G LF N+  +R  TE+ I   P +++
Sbjct: 693 VLLAGLISETHQGTRTGLPGVDQIPGFGDLFSNNDRSRGRTELIIFIRPQIIR 745


>gi|218886129|ref|YP_002435450.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218757083|gb|ACL07982.1| type II and III secretion system protein [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 552

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 100/267 (37%), Gaps = 42/267 (15%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITG------------------------------- 221
             Q+ LK  I E  ++  +++G Q                                    
Sbjct: 253 RAQIQLKAHIVEATKETARELGIQWGGVNRVGNMAGSNDLWVTPGGTGGTAGTSPYNGSY 312

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                    S  G   +F  D  GK  +        G +     E  L AL+ ++ I  L
Sbjct: 313 TPIFGAPGISGQGNGINFPIDTTGKSGAGSLGLMF-GTIGGNMLEMQLSALQESSKINIL 371

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P+++ +  Q A   +G +  Y +  ++ G   V   D  + L  TP V+    + L++
Sbjct: 372 SSPSISTLDNQMAYTENGEKVPYVST-NAQGDREVKFEDAVLRLEITPHVIDDKNLKLKV 430

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +  E  +       P    ++ +TT+ +  G TIV++GL KD     + G+P L  + 
Sbjct: 431 LVKKDEVDLTRTVEGNPFIIKKQTETTLIVQDGETIVISGLTKDRKSTGRSGVPGLHDVE 490

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
            LG LF +     +  E+ I  TP ++
Sbjct: 491 GLGWLFGSDSKASKLEEVLIFITPAVL 517


>gi|326403170|ref|YP_004283251.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
 gi|325050031|dbj|BAJ80369.1| type II secretory pathway protein D [Acidiphilium multivorum
           AIU301]
          Length = 758

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 69/305 (22%), Positives = 122/305 (40%), Gaps = 21/305 (6%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +   N+S + ++  L+I    +V +  TIAEV  +   + G Q            S   
Sbjct: 458 ADASENASVEAMLRKLDI-EPLEVEIDATIAEVDLNGALKYGTQFFFKSGGINAVLSTGT 516

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                    G   +  G          + AL+  T ++ L+ P L   +G++A+   G  
Sbjct: 517 TAALNQSFPGFVLAGHGSDGAP---LAISALQSVTQVQVLSSPQLLVQNGRTANLLVGNL 573

Query: 293 HLYKTVSSSTGATS-------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGV 343
             Y + +S +  T+       V   + GV+L  TP + S G + L +  +VS   P +  
Sbjct: 574 VPYLSQTSQSTLTTGAPVINSVNYQETGVILQITPHISSDGLVALTVSQQVSNVAPSVTT 633

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              + P++  R   ++V +  G TI LAGL+ D++Q+   G+P L  +P+LG LF     
Sbjct: 634 QGLNSPTFSERAVSSSVVVHDGQTIGLAGLITDNVQRGNSGLPFLKDVPLLGPLFGTQDN 693

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           +R   E+ +  TP +V            D  ++  D +    N  N              
Sbjct: 694 SRARQELLVLITPHVVHDA--------TDAAALTSDLEQALPNAANVPAELNGLPMDGSA 745

Query: 464 NYKGA 468
           + + A
Sbjct: 746 DPQAA 750


>gi|28373014|ref|NP_783687.1| hypothetical protein pYVa12790_p34 [Yersinia enterocolitica]
 gi|32470300|ref|NP_863535.1| hypothetical protein pYVe8081_p30 [Yersinia enterocolitica]
 gi|122815824|ref|YP_001004090.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|14579358|gb|AAK69235.1|AF336309_30 YscC [Yersinia enterocolitica]
 gi|23630586|gb|AAN37542.1| YscC [Yersinia enterocolitica]
 gi|121663698|emb|CAL10060.1| putative type III secretion protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 607

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 113/324 (34%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   +      S     
Sbjct: 205 EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQVATRASAQARVEADPSLNAII 257

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 258 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 317

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 318 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 377

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAG 346
              +  K          +    YG +L  TP VL+ G    I L +  E        +  
Sbjct: 378 SETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 435

Query: 347 -DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 436 EGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 495

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 496 RRTVRLFIIEPRIIDEGIAHHLAL 519


>gi|253997792|ref|YP_003049855.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
 gi|253984471|gb|ACT49328.1| pilus (MSHA type) biogenesis protein MshL [Methylovorus sp. SIP3-4]
          Length = 604

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 61/292 (20%), Positives = 116/292 (39%), Gaps = 28/292 (9%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +   +   ET +         +   ++ ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 283 AATVIASPETGVISVRATSRQHEKVQEFLDKVMASARRQVLIEASIVEVTLNDTYQAGID 342

Query: 217 HSITGSSSGPSKSFAAD----FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            +  G     + S          G   + G                 L  L++    + L
Sbjct: 343 WTRLGGGFNINGSLGTTGIVSPSGVAAAAGSVSPFVVGYSSNDISLGLRLLQQFGNTKVL 402

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGVVLHFT 319
           + P L  ++ Q+A        +Y T+ S              +  T+  T   GVV+  T
Sbjct: 403 SSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGLTTGSTNLQSVTTTPNTVPVGVVMSVT 462

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTI 368
           P +   G++ + ++  +S  V  VN  +           +P  +VR+ ++ + + SG T 
Sbjct: 463 PQINDLGQVNINVRPTISRVVSYVNDPNPQLANANVISRIPQIQVRELESVLRVNSGNTA 522

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL GL++D+IQQ  + +P +SKIP  G LF        +TE+ I   P +++
Sbjct: 523 VLGGLMQDNIQQASDRVPEVSKIPFFGKLFTARSDFTIKTELVIFLRPIVIQ 574


>gi|194367008|ref|YP_002029618.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
 gi|194349812|gb|ACF52935.1| type IV pilus secretin PilQ [Stenotrophomonas maltophilia R551-3]
          Length = 657

 Score =  156 bits (394), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 56/315 (17%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +     + +           ++  L+N+     DQV ++  I        +++G +  I
Sbjct: 338 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGAKFGI 397

Query: 220 TGSSSG-----------------------------------------------PSKSFAA 232
           +GS                                                   ++    
Sbjct: 398 SGSRDNVYFSGNLEANRLTRESQVKTAQDNAKAERDWIAGGRVGPPPVATGSTITRGLNW 457

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  S  G  ++  +   +  +  L A++  +    ++ P +   + + A+   G +
Sbjct: 458 SLPVATASNPGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREATIKQGKE 517

Query: 293 HLYKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNA 345
             Y T+S          +V   +  + L  TPT+ +  R+ L +Q    EV + +     
Sbjct: 518 IGYVTISGGGTGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDQLIQLDGY 577

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+    N+
Sbjct: 578 GTVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRSSISKVPFLGDVPFLGNLFKKRGRNK 637

Query: 406 EETEIFIAATPFLVK 420
           ++ E+ +  TP +++
Sbjct: 638 DKAELLVFVTPKVLR 652


>gi|91776807|ref|YP_546563.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91710794|gb|ABE50722.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 723

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 48/200 (24%), Positives = 89/200 (44%), Gaps = 3/200 (1%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           G S   ++    +           FS+  +   F     L ALE     + ++ P +T  
Sbjct: 521 GVSPDGAQDLNVNLPVANAFGNFAFSLFRLPAGFLLNLELSALETDQRGKIVSSPRVTTA 580

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           + Q A    G Q  ++  +SS GAT+V   +  + L  TP +    +I + +  EV +  
Sbjct: 581 NQQKAIIEQGTQIPFQQATSS-GATAVQFKNASLSLEVTPQITPDEKIIMDL--EVKKDK 637

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +GV   ++PS   ++  T V + +G T VL G+ +   +   + +P    +P LG +F+ 
Sbjct: 638 VGVVFNNVPSIDTQRVQTQVLVANGETAVLGGIYEQTERNDVDKVPFFGDLPFLGNVFKR 697

Query: 401 SRFNREETEIFIAATPFLVK 420
                ++TE+ I  TP ++ 
Sbjct: 698 RVKQSDKTELLIFITPKVMD 717


>gi|28898470|ref|NP_798075.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28806688|dbj|BAC59959.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 632

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 227 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 286

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 287 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 346

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 347 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 406

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 407 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 464

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 465 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 524

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 525 VRMFIIEPRIV 535


>gi|325915066|ref|ZP_08177395.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538764|gb|EGD10431.1| type II secretion system protein D [Xanthomonas vesicatoria ATCC
           35937]
          Length = 680

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 62/317 (19%), Positives = 117/317 (36%), Gaps = 42/317 (13%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                     V    +       +     +   V+  L++   +QV ++  + E+     
Sbjct: 305 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 363

Query: 211 KQIGFQHSITGSSSG----PSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------- 255
           K++G Q  + G +       ++   A  G   ++     +  G  D  S           
Sbjct: 364 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAASGTRSGNDDDDSVLEQARNVAAQ 423

Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               F  ++ A++  T    L+ P++  +  + A    G +   
Sbjct: 424 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 483

Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
            T       +     ++   D GV L   P + + G I L I+ EVS     V+A     
Sbjct: 484 TTGEVLGAANDNPFRTIQRQDVGVELEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 543

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R+ +T V + +G  + L GLL  + +Q  E +PLL  +P LGALFR+   NR++T 
Sbjct: 544 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 603

Query: 410 IFIAATPFLVKPVAMRD 426
           + +   P +++  A   
Sbjct: 604 LMVFIRPTIIRDAADAQ 620


>gi|268679665|ref|YP_003304096.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617696|gb|ACZ12061.1| pilus (MSHA type) biogenesis protein MshL [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 506

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 66/320 (20%), Positives = 115/320 (35%), Gaps = 34/320 (10%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRR 207
           V T  +  +A        +             +V   + LL      QV + V+I  V  
Sbjct: 183 VNTGAEGYKAQAPIINANAGIITVTGTKKQLDRVSEYIELLKERLHKQVLIDVSIISVAL 242

Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256
           D   + G   S        +  F            + +    +S     +   V++   F
Sbjct: 243 DSSNKTGIDWSKFQLGFNSTSMFNNNNDNANMYHTSPYSEVGLSGTPILNNLTVVNDAVF 302

Query: 257 ET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS-------V 307
               ++  L  +   + ++ P +  ++ Q A  T G    Y+    +  AT+       V
Sbjct: 303 SVSGLIDFLGSSGDAKVVSSPKVLTMNNQQALITVGDNINYRIPEETDAATTSGTATLSV 362

Query: 308 TTHDY----GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKA 356
           T  +Y    GV+L+ TP +     I LRI   VS      +           P  + +K 
Sbjct: 363 TYMNYSIFIGVLLNITPEISEDNEIILRINPSVSSFKYTDDDQKTTEPREIAPDTQEKKL 422

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T V++  G TI+L GL+  +       +PLLS IP+LG  F++S    +  E+    TP
Sbjct: 423 STVVKVKDGSTIILGGLIASEKGHENSSVPLLSSIPLLGEAFKHSEETLKTKELVFVITP 482

Query: 417 FLVKPVAMRDLSRPDDHYSV 436
            ++        +  D  +S 
Sbjct: 483 RIIGAKGTDKATLKDLGFSQ 502


>gi|153836207|ref|ZP_01988874.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308126333|ref|ZP_05909374.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
 gi|149750482|gb|EDM61227.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ3810]
 gi|308110700|gb|EFO48240.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus AQ4037]
          Length = 624

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 219 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 278

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 279 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIIDIKTTGDVDN 338

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 339 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 398

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 399 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 456

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 457 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 516

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 517 VRMFIIEPRIV 527


>gi|190575670|ref|YP_001973515.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
 gi|190013592|emb|CAQ47227.1| putative type II/III pilus secretin [Stenotrophomonas maltophilia
           K279a]
          Length = 655

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 55/314 (17%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +     + +           ++  L+N+     DQV ++  I        +++G +  I
Sbjct: 337 RIVADERTNTLMISDIPKKIARMRELINVIDRPVDQVLIESRIVIATDTFARELGARFGI 396

Query: 220 TGSSSGP-----------------------------------------------SKSFAA 232
           +GS                                                   ++    
Sbjct: 397 SGSRDNAYFSGNLEANEATRKSQVEANATNAKAYRDWLAGGSTGPAPVPVGSAITRGLNW 456

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +  G  ++  +   +  +  L A++  +    ++ P +   + + A    G +
Sbjct: 457 AMPAASTNPAGSLALSILNAGYLLDVELSAMQEESRGEVISNPRVVTTNQREALIKQGKE 516

Query: 293 HLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAG 346
             Y T+S+  G     +V   +  + L  TPT+ +  R+ L +Q    EV   +     G
Sbjct: 517 IGYVTISAGAGGVATPNVQFKEVVLELKVTPTITNDNRVFLNMQVKKDEVDRLIQLEGYG 576

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS   R+ +T V +  G T+V+ G+ +   +     +P L  +P LG LF+    +++
Sbjct: 577 TVPSINRREVNTAVLVEDGQTVVIGGVYEFTDRNSISKVPFLGDVPFLGNLFKKRGRSKD 636

Query: 407 ETEIFIAATPFLVK 420
           + E+ +  TP +++
Sbjct: 637 KAELLVFVTPKVLR 650


>gi|289547821|ref|YP_003472809.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
 gi|289181438|gb|ADC88682.1| type II and III secretion system protein [Thermocrinis albus DSM
           14484]
          Length = 575

 Score =  156 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 60/251 (23%), Positives = 108/251 (43%), Gaps = 29/251 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHS----------ITGSSSGPSKSFAADF----------- 234
           V+++  I E+R + L+++G   +                G +    +             
Sbjct: 325 VSIEARIVEIREEALRELGINWNMLLSSARLPEAWSGGVGSNIGIGSPPTPGNLFLTPPY 384

Query: 235 --GGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
              G   + GG  ++       +     + ALER    ++LA+PT+ AI+GQ A+   G 
Sbjct: 385 LQPGLSPNPGGILTLTYQKGIINALNLRISALERVNLAKSLAKPTIVAINGQKATIKQGV 444

Query: 292 QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           Q  Y      +  T   ++   D  + L  TP V   GRI L +   ++   +GV     
Sbjct: 445 QVPYLTAAVGAGGTAVPNIQFKDVVLQLDVTPIVSPDGRILLDLS--LTRDTLGVQTPQG 502

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   ++  T V + +G T+V+ G++ +      EGIP   ++P+L  LF   R N+ +T
Sbjct: 503 PAINKKEVRTKVIVENGQTLVIGGVIDNQSYTTNEGIPGFVRVPLLKYLFGQERLNKSDT 562

Query: 409 EIFIAATPFLV 419
           E+ I  TP ++
Sbjct: 563 ELLIFITPTVL 573


>gi|302326451|gb|ADL25652.1| putative bacterial type II/III secretion system protein
           [Fibrobacter succinogenes subsp. succinogenes S85]
          Length = 585

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151
            +++ +     K + ++ +   + ++  +    L +F+  S + V      + +VL G  
Sbjct: 260 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 319

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I  ++  +++ +                  V  +       QVTL   I E R+    
Sbjct: 320 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 354

Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            IG +   T              DF GK +S+ G F   G+L    FE  L ++E     
Sbjct: 355 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 413

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326
           + LA P +T ++G  A         Y     S     +T +     G+ L  TPT+   G
Sbjct: 414 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 473

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L +  E+ +               R   TTV L  G T+ L GL++ +  +++  +P
Sbjct: 474 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 532

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            L  IPILG LF  +    +E+E+ I  TP +
Sbjct: 533 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 564


>gi|328468919|gb|EGF39879.1| putative type III secretion protein YscC [Vibrio parahaemolyticus
           10329]
          Length = 628

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 223 VGGVQTQITDSASVQTSPVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 282

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 283 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRTGVSVGNNRIVDIKTTGDVDN 342

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 343 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 402

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 403 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGTKIPDGGVDDL 460

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 461 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 520

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 521 VRMFIIEPRIV 531


>gi|255322161|ref|ZP_05363307.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
 gi|255300534|gb|EET79805.1| type II and III secretion system protein [Campylobacter showae
           RM3277]
          Length = 481

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/331 (19%), Positives = 114/331 (34%), Gaps = 55/331 (16%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
             +L+    +I      +  +   L              + +  +    + QV + V+I 
Sbjct: 129 KAILNNTTESIVAPDPIIN-ANAGLVTVTGTAAQLRRVSEYIKDIQERLKKQVVIDVSII 187

Query: 204 EVRRDILKQIGFQHSITGSSS-----------------------GPSKSFAADFG----- 235
            V        G   S                              P+ + +  +G     
Sbjct: 188 SVELANSYTKGVDWSKFNIGFKTGLYNRTVVTGVTETVGQDAAGNPTTTLSRTYGLIPAN 247

Query: 236 -------GKFVSEGGDFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                  G  +  G   S+  +    F+ + VL+ LE     + ++ P +T ++ Q A  
Sbjct: 248 DLFWSNRGNGLGGGFSQSMNLIAGFNFNLDGVLNFLETNGRTKVVSSPKITTLNNQQALI 307

Query: 288 TSGGQHLYKTVSSS------TGATSVTTHDY----GVVLHFTPTVLSPGRIGLRIQTEVS 337
           + G    Y+    S       G T++T   Y    G++L+  P V    +I LRI   +S
Sbjct: 308 SVGDNVNYRVQEESQNNNALNGKTTITYKQYSVFIGILLNILPEVSDDNKIMLRINPSLS 367

Query: 338 EP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
                              P    +K  T V++ SG TIVL GL+     +    +P L 
Sbjct: 368 SFKYNEDDVRQSTTIREIAPDTIQKKLSTVVQVNSGDTIVLGGLIAQSKGKENTKVPFLG 427

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP+LG  F++++ N   TE+    TP +V 
Sbjct: 428 DIPVLGHAFKSTKDNLRTTELVFIITPRIVD 458


>gi|53802350|ref|YP_112861.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
 gi|53756111|gb|AAU90402.1| fimbrial assembly protein PilQ [Methylococcus capsulatus str. Bath]
          Length = 729

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 87/244 (35%), Gaps = 15/244 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243
            QV ++  +     D L+++G +      +   ++                    +S  G
Sbjct: 484 RQVMIESRVVIANVDFLRELGAKLDFRPKNLTAAERLNPTGSMADLGVDLAKLTTLSPYG 543

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                  +  +  +  L A ++      +A P +       A    G +  Y+     TG
Sbjct: 544 TAQYVVSMGDYLLDLELSAAQKEGRGEIVANPRVLTADQSKAKIMQGVELPYQITQQGTG 603

Query: 304 ----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                 +V      + L  TP +     I + +  +  +    +      +   R+ DT 
Sbjct: 604 GGIPVQNVAFKPAVLELDVTPHITPDDHILMDLMVKKDD-KGELAPNGNFAIEKREIDTV 662

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++ +G T+VL G+ +   +   + +P    +P +G +FR +     + E+ I  TP +V
Sbjct: 663 AQVANGETVVLGGVYEGTRRNNTDKVPFFGDLPGIGFMFRRNAVEDRKKELLIFITPKIV 722

Query: 420 KPVA 423
           K  +
Sbjct: 723 KQTS 726


>gi|307721768|ref|YP_003892908.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979861|gb|ADN09896.1| type II and III secretion system protein [Sulfurimonas autotrophica
           DSM 16294]
          Length = 565

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 71/432 (16%), Positives = 159/432 (36%), Gaps = 36/432 (8%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-----RTMYLFGKNVGQANVIL 101
              I +  N+  +L +   ++ +++ +    +V +          + +FGK  G  ++++
Sbjct: 16  ANDILVFNNEYQVLPLQKKIKRLIIGNKETINVSLLDAVSAKGTLLKIFGKKTGNTSILV 75

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
           I  D   + N  + +  ++ +++  +     +  +  ++ +D+ V+ G+ +   D +R  
Sbjct: 76  IYTDNS-IQNYHVYVNENLGYIQKMINIIEPNLRLS-KVGNDSTVIAGVFKDPHDKKRIY 133

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
           E+ +         +  + +  + +N +       +  K+ +  V     K +G    ++ 
Sbjct: 134 EILQK--GGINTEKLMDLTKTQKVNKM-------IRTKLYLIAVDNQKAKDLGGVTGLSF 184

Query: 222 SSSGPSKSFAADFGGKFVSEGG---DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            +   + +  A         G    +          S    L+ L+       L +  L 
Sbjct: 185 FNKYVNATANAAAANSATFSGFLLDNLGNFTTSTGNSVLATLNFLQTKGITNILDDTVLI 244

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGAT----SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
               ++A+F  GG+    T  +    T     V   +YG+ L  T   +      + I  
Sbjct: 245 TTEDKNATFRVGGELYIPTGITQNVGTAPTIQVEAKEYGLKLTLTSKFMQTNG-YMHINV 303

Query: 335 EVSEPVIGVN---------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           ++ +  I  N            +PS+  +   T V + S   I L G L  +  + +E +
Sbjct: 304 DIQDSAIDANIAHNVSLGDGISIPSFVSKNIKTNVVVKSEQVIALGGRLHSENSKSEEKV 363

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PL   IPILG LF++   N   T++     P +V      D     D Y    ++     
Sbjct: 364 PLFGDIPILGELFKHKIENLGTTDLIFLLVPEIVDANEDIDD---TDFYRNFKNSSNILH 420

Query: 446 NRVNKIYGPKEA 457
            +V  +   + A
Sbjct: 421 AKVTDVPKEEAA 432


>gi|152991627|ref|YP_001357348.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
 gi|151423488|dbj|BAF70991.1| type II secretion system protein D [Sulfurovum sp. NBC37-1]
          Length = 678

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 108/305 (35%), Gaps = 39/305 (12%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                  V   E              + ++ +  ++I  + QV +K  I E+ +++ +Q+
Sbjct: 297 PPSKAMVVSDIERNALIVLATGEQMRNIRETVRKIDIP-KVQVYVKAKIVEIDKNMAEQV 355

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVS------------------------------EGG 243
           G ++ + G +   S  F         +                                 
Sbjct: 356 GMKYGMNGGTITSSGLFTLAGNMGASALQMSPALLGFLNTNNTKTYTDPVTGSVIQENNP 415

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG------QHLYKT 297
            F        F+    L  LE+  A   L+EP++   + + A    G       Q    T
Sbjct: 416 AFKFDSTDKAFALGAALDLLEKNGAAHLLSEPSVLCTNNKEAEIYVGQTRSILTQAQQST 475

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKA 356
            + S    + +  D G+ L   P + S  ++ L ++T + +         D P+   R  
Sbjct: 476 TAISNVINNYSREDIGLTLKVKPRLSSNNQVTLEVETVLEDIDPSSEQVEDRPTTTKRTV 535

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAAT 415
            T   + +G  I+L GL+K    +    +P L  IP+LG  LF ++     E  + I  T
Sbjct: 536 KTNAIVRNGEMIILGGLIKRAGGKNISKVPFLGDIPVLGEMLFTHTGDVEREQNVVIYLT 595

Query: 416 PFLVK 420
           P++V+
Sbjct: 596 PYIVR 600


>gi|191174167|ref|ZP_03035680.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|191174561|ref|ZP_03036057.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300972444|ref|ZP_07171951.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
 gi|190905169|gb|EDV64812.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|190905585|gb|EDV65211.1| bacterial type II and III secretion system protein [Escherichia
           coli F11]
 gi|300309168|gb|EFJ63688.1| bacterial type II/III secretion system short domain protein
           [Escherichia coli MS 200-1]
          Length = 421

 Score =  156 bits (393), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T   +   
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297

Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                   ++  HD GV L  TP V+  G++ L I T          A D+     R+  
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQRIMYILLTAH 416

Query: 418 LVKPV 422
           +++P+
Sbjct: 417 IIRPL 421


>gi|289662170|ref|ZP_06483751.1| fimbrial assembly protein [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 652

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/287 (15%), Positives = 99/287 (34%), Gaps = 53/287 (18%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS--------------------------- 223
              DQV ++  I        + +G +  ++G++                           
Sbjct: 364 RPVDQVLIESRIVIATDTFARDLGARFGVSGATGRGILSGSLESNVNYQNTSAQRANELA 423

Query: 224 ------------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                  +     GG   S     +   +   F+ +  L A++ 
Sbjct: 424 STATATSPGTSNTIPQFLFPSGLNIDLGAGGFTTSGAAGLAYTLLGSHFNLDIELSAMQE 483

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVLHFTP 320
                 ++ P +   + +      G +  Y T+     +      +V   +  + L  TP
Sbjct: 484 EGRGEVVSNPRIVTANQREGVIKQGREIGYVTISGAGAAGGGSQANVQFKEVLLELKVTP 543

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           T+ +  R+ L +  +  E    +     G +P    R+ +T V +  G T+V+ G+ +  
Sbjct: 544 TITNDNRVFLNMNVKKDEVARFITLPQYGTVPEINRREVNTAVLVADGETVVIGGVYEFT 603

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
            ++    +P L  IP LG LF+    ++E+ E+ +  TP +++  + 
Sbjct: 604 DRESVAKVPFLGDIPFLGNLFKKRGRSKEKAELLVFVTPKVLRVASA 650


>gi|302879515|ref|YP_003848079.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302582304|gb|ADL56315.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 599

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 110/295 (37%), Gaps = 33/295 (11%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            + A  ++            +   +  ++ ++ +      QV L+ TI EV      Q G
Sbjct: 274 REAAYVIANPETGIISVRATSRQHATIREFIDKVMNNARRQVLLEATIVEVTLSDQYQQG 333

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S+   + G S +  +  G         ++  G    FS    +  LE    +  L+ 
Sbjct: 334 IDWSLL-RTLGLSLTQVSPVGALTAMGTISYTNPGKPGSFSLSGSIKLLETFGKLHVLSS 392

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGA--------------TSVTTHDYGVVLHFTP 320
           P L+ ++ Q+       + +Y T+  + G               +++ T   G +++ TP
Sbjct: 393 PKLSVLNNQTGLVKVVDESVYFTIEVTQGTYGANNTVLTLPTYTSTIHTVPVGFMMYVTP 452

Query: 321 TVLSPGRIGLRIQTEV---------------SEPVIGVNAGD-MPSYRVRKADTTVELPS 364
            +     + L ++  +               +     ++  + +P  + R+ ++ + + +
Sbjct: 453 QIGGDTEVTLNLRPTITRILSYAKDPNPALINTITPALSVTNLIPQIQTREMESIMRVRN 512

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G   VL GL++D        IP L  +P LG LF+       ++E+ +   P ++
Sbjct: 513 GDIAVLGGLMQDTRAGDTNQIPGLGSVPGLGQLFKARTDKNTKSELVVFLRPVIL 567


>gi|254455430|ref|ZP_05068859.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082432|gb|EDZ59858.1| type II Secretion PilQ [Candidatus Pelagibacter sp. HTCC7211]
          Length = 516

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 110/292 (37%), Gaps = 30/292 (10%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                 +  E + T        +    +  KV+N ++I   +QV ++  + +   +  KQ
Sbjct: 231 NAYSPIKITEETATRSIIVRGKERDLDTVDKVLNEIDIKT-EQVLIEAFVVKATSEFEKQ 289

Query: 213 IGFQHSIT--------GSSSGPSKSFAAD---------------FGGKFVSEGGDFSVKG 249
           +G +            G   G + S                                +  
Sbjct: 290 LGTRLGGYYKRNDEQIGGIVGSTSSAGTLDDTSAALAQVAKDQITNFAATGATSGIGILK 349

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                  +  + ALE+   + T++ P +  I+ Q AS T G +  Y+T S  T +TS   
Sbjct: 350 KTGSAVLKAEITALEKMGMVETISNPKVFTINNQPASVTQGKEIPYETTSEGTTSTS--F 407

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
            +  + L  TP+++  G + L IQ    +      + D P     +  T + +  G  +V
Sbjct: 408 KEAALKLQVTPSIIGDGNVLLDIQVNNDD---ADTSQDEPPITKMEIITKLLVADGDIVV 464

Query: 370 LAGLLKDDIQQLKEGIP-LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + G+  ++I + KE +P  L  +P++G L +  +   +  E+ I   P ++ 
Sbjct: 465 IGGIKSNNISKAKEQVPGGLGNVPVIGNLLKYKKKEDKLEELLIFIAPRVLD 516


>gi|149376650|ref|ZP_01894409.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
 gi|149359023|gb|EDM47488.1| Type II secretory pathway, component PulD [Marinobacter algicola
           DG893]
          Length = 578

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 110/321 (34%), Gaps = 36/321 (11%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231
            +  + +  ++ +    +  + QV L+  I E+  +   Q G   +   S+S  + S   
Sbjct: 264 SDGKSLAQVEEYLRRTQLIMQRQVVLEAKILEIGLNEGYQQGINWADIQSASSVTASDGL 323

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                  A  G    +          +    F  ++  L     ++ L+ P ++ ++ Q 
Sbjct: 324 PEDFTAQALAGQVITTSDIGGLFSASVRAGDFTGLIELLGEQGNVQILSSPRISTVNNQK 383

Query: 285 ASFTSGGQHLY-------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           A    G    +                  ++ +  +T    G+ L  TP +   G I L 
Sbjct: 384 AVIKVGTDEFFVTDIDFDDNNSAVTATDRTSTSVELTPFFSGISLDVTPQISEDGAITLH 443

Query: 332 IQTEVSEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   VSE         +             VR+ D+ +   SG  +V+ GL+++  +   
Sbjct: 444 VHPSVSEVNDQKKVITVGDRDVTLPLALSTVRETDSVIRAESGQIVVIGGLIQNTSEDNN 503

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442
             +P  S+IP+LG LF+  RF   ++E+ I       +PV         D  S   D   
Sbjct: 504 SAVPFFSEIPLLGELFKQRRFQSRKSELVILL-----RPVVAGSQQMNAD-VSASRDRMR 557

Query: 443 FFFNRVNKIYGPKEASEVEGQ 463
                +      K   E   +
Sbjct: 558 VLRELLESSESVKPQPEKARR 578


>gi|145301440|ref|YP_001144279.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
 gi|66947980|emb|CAE83117.1| AscC protein [Aeromonas salmonicida subsp. salmonicida]
 gi|88698168|gb|ABD48952.1| AscC [Aeromonas salmonicida subsp. salmonicida A449]
 gi|142856322|gb|ABO92531.1| AscC protein [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 617

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%)

Query: 116 IERDIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSG 172
            +     +   L + ++D+ ++ V    +       G      D      +      +  
Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGNKAATATSGQAIVQADPSLNAVIVRDAPERMA 271

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                 ++  K    + +A          I ++  + L Q+G    +   +    +    
Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323

Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G            S+            ++ LE     + ++ PTL       A     
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346
             +  K   S      +    YG +L  TP V+  G    I L +  E  ++      A 
Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+      DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+      
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501

Query: 407 ETEIFIAATPFLVK 420
            +       P L+ 
Sbjct: 502 RSVRLFIIEPRLID 515


>gi|261414950|ref|YP_003248633.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
 gi|261371406|gb|ACX74151.1| type II and III secretion system protein [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 603

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/332 (22%), Positives = 131/332 (39%), Gaps = 36/332 (10%)

Query: 96  QANVILIGHDGKQMLNLDILIERDIAHLEM--TLRRFIADSNIRVEMV--SDTVVLHGMV 151
            +++ +     K + ++ +   + ++  +    L +F+  S + V      + +VL G  
Sbjct: 278 SSSLWVSEEGAKALADVRVFSLKHVSPEKAMAQLSKFMKGSELNVSEYREQNALVLGGSP 337

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R I  ++  +++ +                  V  +       QVTL   I E R+    
Sbjct: 338 RAIARAEELLKMVD------------------VPQM-------QVTLACVIVEFRKGRSF 372

Query: 212 QIGFQHSITG--SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
            IG +   T              DF GK +S+ G F   G+L    FE  L ++E     
Sbjct: 373 AIGVRSGATRNVGERDIQARGFFDFLGKDISKSGAFGKIGIL-PDRFELELSSMEENNEA 431

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPG 326
           + LA P +T ++G  A         Y     S     +T +     G+ L  TPT+   G
Sbjct: 432 KVLARPRVTTLNGNKAELNVTNTVYYLVSQVSADGYPITDYRSFNDGISLELTPTMTQDG 491

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L +  E+ +               R   TTV L  G T+ L GL++ +  +++  +P
Sbjct: 492 LITLSVSPEI-KTAGRSTGDGPRDISSRNMKTTVVLRDGETLCLGGLIRKNKTEVRSAVP 550

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            L  IPILG LF  +    +E+E+ I  TP +
Sbjct: 551 FLGSIPILGRLFSYTSEEEDESELAIFITPSV 582


>gi|260775643|ref|ZP_05884539.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260608059|gb|EEX34228.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 686

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/358 (16%), Positives = 118/358 (32%), Gaps = 20/358 (5%)

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            +  D  V       +     G  ++I  L+  D    LN ++    ++   E  LR+  
Sbjct: 193 ASVTDREVRYRNEHIVI---PGVTSLIKELLSQDRNPALN-EVEHLYNLNQ-ERILRQTQ 247

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
           +        +S  ++                   +       +    S  ++++  L+  
Sbjct: 248 SIEGGDQMDISPYIMGGSRAPETNSVNNVSADVRSNSVLIYDDLAKRSMYQRLIEKLD-K 306

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
               V +   I ++ R  L QIG       +            G      G   +   + 
Sbjct: 307 PSRMVEIDAIILDIERKQLSQIGVNWGYQKNDF--------SLGSMMPQGGVQTATLFIQ 358

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D+  F   L ALE       LA P++  ++ Q A   S      +T         V    
Sbjct: 359 DKGRFYAELQALEMKGKATVLANPSVLTMANQPAVIDSSETAFIQT--EGERVVDVREVT 416

Query: 312 YGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369
            G  L   P +L   G+  +++  ++ +  I      + PS       T   +    ++V
Sbjct: 417 AGTGLQVVPRILTGGGKTTIQLNVDIEDGNIFEEEDKETPSVNRSTISTQALVTPEQSLV 476

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
             G    +  +    +P+L  IP+LG+LF+  +  R +       TP ++     +D+
Sbjct: 477 FGGFNVSENTRSTSKVPVLGDIPLLGSLFQVQKEARTKRVRLFILTPRILDSSMTQDV 534


>gi|322418671|ref|YP_004197894.1| type II and III secretion system protein [Geobacter sp. M18]
 gi|320125058|gb|ADW12618.1| type II and III secretion system protein [Geobacter sp. M18]
          Length = 862

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 72/407 (17%), Positives = 146/407 (35%), Gaps = 68/407 (16%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            D  V +  T+ ++ K   +          +  +    L + D       +R  +    I
Sbjct: 241 LDKKVLNESTIIIYPKTPDKIK-----QYEELFVQTFYLNKLDAKKAVNLVRTMLQVKKI 295

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            V   ++ +V+      ++ +++ +E              AN                +V
Sbjct: 296 YVNEEANALVIRDTPEVVEVARKILE--------------ANDVPD-----------AEV 330

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-------------------GK 237
            L+V + E+ +   +  G   S   +S G +                             
Sbjct: 331 LLEVEVFELSKAGTETFGLLLSSYAASMGVTGPQGKFLSDALSTTTTTSTTSGTTTTVAD 390

Query: 238 FVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-- 294
             +    FSV+G     +      +  +  +   TL+ P +   + + A F  G +    
Sbjct: 391 VSNLLNVFSVRGYNGYLTVPSATFNFGKTLSNGETLSNPKIRVKNREKAKFNVGTRVPIT 450

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMP 349
             + +S+  + +V   D GV ++  PT+     + +++  EVS       V    A  + 
Sbjct: 451 TTSSTSTGTSVNVQYVDVGVKVNAEPTIQLNNEVVIKLGLEVSSILGREKVGTDQATTVV 510

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   R  DT + L  G T ++ GL++      K+ + LL  IP+LG LF N+  + +++E
Sbjct: 511 TIGTRNLDTVLSLKDGETSIIGGLMQKSETDSKKKVFLLGDIPVLGNLFSNTGKSNDKSE 570

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           + +A TP +V+ V              E+D  AF+  R ++      
Sbjct: 571 LLLAITPRIVRGV-----------TVPENDVAAFWSGREDEPSTTAP 606


>gi|239618224|ref|YP_002941546.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
 gi|239507055|gb|ACR80542.1| type II and III secretion system protein [Kosmotoga olearia TBF
            19.5.1]
          Length = 2628

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 76/404 (18%), Positives = 140/404 (34%), Gaps = 49/404 (12%)

Query: 32   ANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVLVSDPTKAD---VVVHSP 84
            A  A +      I K   IS+     L++   L +     D  V+     +   V V   
Sbjct: 2260 AENANLIAVMKRIAKSLGISLMVPEELDETFTLTLEGVTWDTFVA--AIQECEPVKVEKV 2317

Query: 85   RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
              +Y+  K    +        G+Q+  +      +I  L+  +        +  + V+  
Sbjct: 2318 NDIYIVRKKEIVSEAPTDDATGEQIYRV----YHNIEELKTLIE--FYGGTVYADSVNGI 2371

Query: 145  VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            +V+ G+ ++     R +EL E                           + QV ++  I +
Sbjct: 2372 LVVKGLPKS-----RVLELMEQVSGTFTSP------------------KKQVKIETRIVD 2408

Query: 205  VR--RDILKQIGFQHSITGSSS-GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
                 DI KQ          +    S S    F      +        +    +    L 
Sbjct: 2409 KSLLDDITKQFSTSLGFEQPNILFSSGSLNLSFSILDSVDFAKLLKNLITGSATITAQLE 2468

Query: 262  ALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLH 317
              +       ++ P++ A+SG+ A    G            ++      +   + GV + 
Sbjct: 2469 --KSNVDGSIISNPSIVALSGEEARIHIGDTIPILLKKIDPATGNIVEELQYLETGVEMT 2526

Query: 318  FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
             TPTV   G I L +  +VSEP    N  D+   + R+A T + +  G T+ + GL+ + 
Sbjct: 2527 ITPTVKDDGTILLDLYIKVSEPQPYAN--DLYGEKTREAKTKLVISDGNTLTIGGLVSER 2584

Query: 378  IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                   +P    +P +G LFR  +  +E+ E+ I  T  +V P
Sbjct: 2585 ENVSVTKLPFFGDLPFIGKLFRAEKTTKEQREMVIFITAKVVAP 2628


>gi|325922191|ref|ZP_08183978.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
 gi|325547310|gb|EGD18377.1| type II secretory pathway protein D [Xanthomonas gardneri ATCC
           19865]
          Length = 674

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 64/359 (17%), Positives = 121/359 (33%), Gaps = 48/359 (13%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
                     V    +       +     +   V+  L++   +QV ++  + E+     
Sbjct: 292 APAAGKRPVIVRYPGSNALIINADPETQRALMDVIRQLDV-HREQVLVEAIVVEISDTAA 350

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------------- 255
           K++G Q  + G +           G          +  G                     
Sbjct: 351 KRLGVQLLLAGRNGTVPLIATQYSGASPGIVPLAAAAAGTRSNNGEEDSVLEQARNVAAQ 410

Query: 256 --------------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               F  ++ A++  T    L+ P++  +  + A    G +   
Sbjct: 411 SLLGLSGGLIGLAGQSNDAVFGMIIDAVKSDTGSNLLSTPSIMTLDNEQARILVGQEVPI 470

Query: 296 KTVS-----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMP 349
            T       +     ++   D GV L   P + + G I L I+ EVS     V+A     
Sbjct: 471 TTGEVLGTANVNPFRTIQRQDVGVQLEVRPQINTAGGITLAIKQEVSAIAGPVSAQSSEL 530

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
            +  R+ +T V + +G  + L GLL  + +Q  E +PLL  +P LGALFR+   NR++T 
Sbjct: 531 VFNKRQIETRVVVENGAIVALGGLLDQNDRQTVEKVPLLGDVPGLGALFRHKSRNRDKTN 590

Query: 410 IFIAATPFLVK-PVAMRDLSRP-----DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           + +   P +++     + ++ P      D    + D +A     V      +      G
Sbjct: 591 LMVFIRPTIIRDAADAQRMTAPRYNYLRDRQLADGDPEAALDALVRDYLRAQPPQLPAG 649


>gi|91774432|ref|YP_544188.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91708419|gb|ABE48347.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 539

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/326 (19%), Positives = 125/326 (38%), Gaps = 36/326 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           A  +  +  +     +  N   +KV   ++ +  +   QV ++ +I EV  +   Q G  
Sbjct: 214 AATVIASPETGIISVRATNRQHEKVQEFLDKVMDSARRQVLIEASIVEVTLNDTFQAGID 273

Query: 217 HSITGSSS------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
            S  G+        G S                 FSV         +  L  L +    +
Sbjct: 274 WSRLGNGFNMRSELGLSSVLTPAGIAGTAGTSVPFSVGYSSTNSDIDFSLRLLRQFGDTK 333

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------THDYGVVLH 317
            L+ P L  ++ Q+A        +Y T+ S     +V              T   GVV+ 
Sbjct: 334 VLSSPKLMVLNNQTAVLKVVDNLVYFTIQSQISQGTVQGSANLQAVTTTPNTVPVGVVMS 393

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKADTTVELPS 364
            TP +   G + + ++  +S  +  V+  +             +P  +VR+ ++ +++ S
Sbjct: 394 VTPQINDSGLVNINVRPTISRVLGYVDDPNPQLAAVTPPIVSRIPQIQVRELESMLQINS 453

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T VL GL++D+IQQ  + +P ++K+P++G LF        +TE+ I   P +++  ++
Sbjct: 454 GNTAVLGGLMQDNIQQATDKVPGIAKVPLVGKLFTARSNFNVKTELVIFLRPIVIRNASL 513

Query: 425 RDLSRPD-DHYSVEDDAKAFFFNRVN 449
                     Y      +      VN
Sbjct: 514 ESDELASYKQYLPAQQLQRLIDESVN 539


>gi|154246049|ref|YP_001417007.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
 gi|154160134|gb|ABS67350.1| general secretion pathway protein D [Xanthobacter autotrophicus
           Py2]
          Length = 767

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 65/291 (22%), Positives = 125/291 (42%), Gaps = 32/291 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++ T+AEV  +     G Q  +T    G  ++  +       S+  D ++  VL  F
Sbjct: 486 QVAIEATVAEVTLNDTLAYGVQFYLTSKDLGLGRNNGSVLNT-LSSDITDQAINRVLPGF 544

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------S 300
           +           +L AL   T ++ L+ P++  +  Q A+   G +    T S      S
Sbjct: 545 NLLVGRENQPRAILDALHTVTDVKVLSNPSVVVVDNQKATLQVGDEVPVSTGSATVLSSS 604

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---------PSY 351
           +T   ++   + G++LH  P V   G++ L I+ E+S                    P+ 
Sbjct: 605 NTVVNTIEYKNTGIILHVVPRVNVNGQVRLEIEQEISNVTQSDPTTSGTSSNSTGLTPTV 664

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  + + + SG T++LAGL+ +    +++G+P+L +IP +G  F ++    + TE+ 
Sbjct: 665 SQRKVKSVIAVASGQTVLLAGLISERHNGVRQGVPILDQIPGVGDAFAHTNGTVKRTELI 724

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           I   P +++           D ++V ++ +A     V  + G  +A     
Sbjct: 725 IFIRPQIIRDNV--------DAHTVAEELRAKLRGTVTTLPGGPQAPLGAR 767


>gi|254228227|ref|ZP_04921656.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
 gi|151939300|gb|EDN58129.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           sp. Ex25]
          Length = 624

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/332 (18%), Positives = 118/332 (35%), Gaps = 43/332 (12%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +  +   L+R ++    +V   S+  V      T   S +   +          +  
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSASNKEVTS--SDTPVKSNKTASV----------HGG 257

Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
           A   ++  +N + +                    Q  ++V  +I ++  + L Q+G    
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317

Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
                G++         D     V+ G   + K +LD  +       +  LE   + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVV 377

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
           + PTL       A   +      K V   T A  +    YG +L   P ++        +
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPK 435

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +  E    +      D+PS R  +  T   +  G ++++ G+ +D++      +PL
Sbjct: 436 INLSLHLEDGAKITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LGALFR++   +  T       P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527


>gi|74316224|ref|YP_313964.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
 gi|74055719|gb|AAZ96159.1| type IV pilus assembly protein PilQ [Thiobacillus denitrificans
           ATCC 25259]
          Length = 745

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 42/265 (15%), Positives = 94/265 (35%), Gaps = 28/265 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADF 234
            ++  L++    QV ++  +        +++G +                G + + +A  
Sbjct: 476 GLLARLDVPAR-QVMIEARVVIADSLWSRELGVRLGTRLFKATGRDNIGVGGTLNESASI 534

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALER---------------ATAIRTLAEPTLTA 279
                         G +   + +  +  L                     + L+ P +  
Sbjct: 535 AAGGTPTVTPQVELGTVGAAAGQIAMSLLNASNGNLLSLELSALEADNRGKILSNPRVMT 594

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
            + + A   +G Q  + T  ++    +VT  D  + L   P +L+   + + I+ +    
Sbjct: 595 SNQKPAVILNGTQIPFITPGTANSPATVTFKDAFLCLLVDPQILNNDALIMTIEVQKDAI 654

Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                A       P+   R+  T V + +G T+VL G+         + +P L  +P LG
Sbjct: 655 DTANAAVGADIIAPAIATRRIKTQVRVNNGETLVLGGIFDQTEFNNVDKVPFLGDVPGLG 714

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            LF+ +    ++TE+ +  TP ++ 
Sbjct: 715 NLFKRTNKQDQKTEMIVFITPRILD 739


>gi|308125809|ref|ZP_05777658.2| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
 gi|308111516|gb|EFO49056.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           parahaemolyticus K5030]
          Length = 604

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/311 (19%), Positives = 112/311 (36%), Gaps = 31/311 (9%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--- 194
           V  V   +     V+T   +    E ++     +  +  A   ++  +N + +       
Sbjct: 199 VGGVQTQITDSASVQTSSVNGLPAEAAKPRGKTASVHGGATVEAEPGLNAIIVRDTQARL 258

Query: 195 -------------QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPSKSFAADFGG 236
                        Q  ++V  +I ++  + L+Q+G         G++         D   
Sbjct: 259 PLYRKLVAQLDQPQSRIEVALSIVDISANDLRQLGVDWRAGVSVGNNRIVDIKTTGDVDN 318

Query: 237 KFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
             V+ G   S K +LD  +       +  LE   + + ++ PTL       A   +    
Sbjct: 319 GDVTLGSGQSFKSLLDSTNLNYLLAQIRLLESKGSAQVVSRPTLLTQENVEAVLNNSSTF 378

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDM 348
             K V   T A  +    YG +L   P ++         I L +  E    +      D+
Sbjct: 379 YVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFATRPEINLSLHLEDGAKIPDGGVDDL 436

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T
Sbjct: 437 PSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSNTNTTRRT 496

Query: 409 EIFIAATPFLV 419
                  P +V
Sbjct: 497 VRMFIIEPRIV 507


>gi|9630755|ref|NP_047359.1| maturation protein [Enterobacteria phage If1]
 gi|6136220|sp|O80300|G4P_BPIF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|3676288|gb|AAC62158.1| maturation protein [Enterobacteria phage If1]
          Length = 429

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 56/234 (23%), Positives = 91/234 (38%), Gaps = 11/234 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  I E          F       S                S GG F   G+ +
Sbjct: 197 RTQVLVESVIFETTASDGFDFSFAAGDPSGSPVAGGINTDRLTSVLSSTGGSF---GIFN 253

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
                  L ALE ++    L+ P +  +SGQ  +FT+G    + T   +           
Sbjct: 254 GNILGLSLKALETSSKSTLLSMPRILTMSGQPGTFTAGQNVPFVTGRVTGEAANVNNPFQ 313

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           ++  HD G+ L   P V   G + + + T          A D+     R   TTV+L SG
Sbjct: 314 TIERHDVGISLKVVPVVTPGGLLIMDVSTNADSISDSQTASDI-ITNTRSISTTVQLKSG 372

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            T++L G++ +        +P +SKIP++GALF +   N  +  ++I     +V
Sbjct: 373 QTVLLGGMVDNRESDSDSSVPWVSKIPLIGALFTSKSSNANKRTLYILIRARVV 426


>gi|242281104|ref|YP_002993233.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
 gi|242123998|gb|ACS81694.1| general secretion pathway protein D [Desulfovibrio salexigens DSM
           2638]
          Length = 671

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 60/341 (17%), Positives = 125/341 (36%), Gaps = 44/341 (12%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKK 183
           +   +A   ++  +    +   G  +       A + S +  + S  +  +      + +
Sbjct: 284 IEAVVAGEVLKSLISGGGIPSEGNSKNSVAGDSAAKSSSSRDTSSASSNDSGGVQVSADE 343

Query: 184 VMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             N L +                     DQV ++  + E   D  K+ G +        G
Sbjct: 344 ATNTLIVMAPTDQLSQIDNFVEQLDQAQDQVYIEALVLETTLDHAKEFGVEWQGGIDLGG 403

Query: 226 PSKSFA---------ADFGGKFVSEGGDFSVKGVLDR--------FSFETVLHALERATA 268
              +           + +     +  G +S+  + D          +   +++  + AT 
Sbjct: 404 SVATLGYTKAKDSNLSAYASNPSNVPGGYSMGVLGDTISYAGRSFPTIGALVNFTKSATD 463

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL- 323
              ++ P +  +    A    G    YKT  SST   +V       D G+ L  TP +  
Sbjct: 464 FNLISAPQIMTLDNAEAEIFVGQNRPYKTGQSSTSGDAVVSTYEYKDVGIKLKITPRINR 523

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G + L++    +      +  ++P    RK DTTV L  G T+V+ GL++ D  + + 
Sbjct: 524 EDGLVKLKVYQTYNTVSEA-STTELPITNDRKTDTTVLLADGSTMVIGGLIRADHTRTEA 582

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G+P LS +P+LG LF+ +  +  +  + +  +  +++    
Sbjct: 583 GVPYLSDLPLLGWLFKTTSNSGNKNTLMVFLSARIIQTTEG 623


>gi|317487416|ref|ZP_07946204.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
 gi|316921348|gb|EFV42646.1| type IV pilus secretin PilQ [Bilophila wadsworthia 3_1_6]
          Length = 541

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 69/363 (19%), Positives = 133/363 (36%), Gaps = 70/363 (19%)

Query: 101 LIGHDGKQMLNLDI-LIERDIAHLEMTLRRFIADSN--------IRVEMVSDTVVLHGMV 151
           LI      +    + +   + A L+ +L +F+  +N        I V+  S+ +++    
Sbjct: 170 LISRQNSPLTVSVVSVRYAEAAALQQSLTKFLTAANGQGGQAAVIEVDEHSNALIIQ--- 226

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            T QD QR + L +                             QV LK  I E  ++  +
Sbjct: 227 ATEQDQQRIIRLVDNLD----------------------RPRPQVHLKAYIVEATKETAR 264

Query: 212 QIGFQHS--------------ITGSSSGPSKSFAADFGGKFVSEGGDFS----------- 246
           ++G Q                  GS +  ++      GG   + G               
Sbjct: 265 ELGVQWGGVWRSGSFNNGNHAWIGSGASGTQGQDPVTGGLTGTHGSGLGGAPFGLDYSGI 324

Query: 247 ----------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                     + G +     E  L+ +E+   I  L+ P++T +  + A   +G +  Y 
Sbjct: 325 ASNDMGSLGFLFGKVGGSMLEVQLNLMEKDGNINILSSPSITTLDNKMAYTENGEKVPYV 384

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA 356
           +  S+ G   V   D  + L  TP V+    + L++  +  E     +    P    ++ 
Sbjct: 385 ST-SNMGDREVKFEDAVLRLEMTPNVIDGDNLKLKVLVKKDEVDTSRSVDGNPFIIKKQT 443

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +TT+ + +G T+V++GL K+    +  G+P L  IP    +F +    +   E+ I  TP
Sbjct: 444 ETTLIMRNGETVVISGLTKEKGTDINAGVPGLKDIPGGKYVFGHESKGKTMEEVLIFITP 503

Query: 417 FLV 419
            ++
Sbjct: 504 EIL 506


>gi|256829756|ref|YP_003158484.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
 gi|256578932|gb|ACU90068.1| type IV pilus secretin PilQ [Desulfomicrobium baculatum DSM 4028]
          Length = 693

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 41/241 (17%), Positives = 92/241 (38%), Gaps = 19/241 (7%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK-------SFAADFGGKFVSEGG 243
             E QV ++  +     +  + +G +   + ++   +           A  G   ++   
Sbjct: 458 RAERQVMIEARLVYATDEFQRSLGVKWGTSYATETAANLPSEQWRGTFASTGLNAINTVN 517

Query: 244 DFSVKGVLDRF------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             ++ G + +F      + +  L   E    ++T++ P +  ++   A     G  L   
Sbjct: 518 GITLGGTIGKFLGEDLFALDAALQLGEANNLVKTISSPRILTLNNNRAEIQ-QGTKLATA 576

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
             S +G T+    +  + +   P +    ++ L +  E+S+     +  D      ++  
Sbjct: 577 TESESGGTTTEYEEAVLKISVLPQITPDNKLILDL--EISDDSPKSDGRD---IDTKQTK 631

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + +    TIV+ G+ K         IP L  +P LG LF+N+   + + E+ I   P 
Sbjct: 632 TKMMVSDRETIVIGGVQKTTETSNTNQIPGLGDVPGLGWLFKNTYDAKSKAELLIFIQPR 691

Query: 418 L 418
           +
Sbjct: 692 I 692


>gi|262394108|ref|YP_003285962.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
 gi|262337702|gb|ACY51497.1| type III secretion system outer membrane pore YscC [Vibrio sp.
           Ex25]
          Length = 604

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 115/320 (35%), Gaps = 19/320 (5%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV---ELSETFLSQSGR 173
              +  +   L+R ++    +V   S+  V         +   +V      E     +  
Sbjct: 190 TITVPGIASVLKRVVSGVQTQVTSASNKEVTSSDTPVKSNKTASVHGGATVEAEPGLNAI 249

Query: 174 NQYANSSSKKVMNLLNIAGED-QVTLKV--TIAEVRRDILKQIGFQHSI---TGSSSGPS 227
                 +   +   L    +  Q  ++V  +I ++  + L Q+G         G++    
Sbjct: 250 IVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGVSVGNNRIVD 309

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQS 284
                D     V+ G   + K +LD  +       +  LE   + + ++ PTL       
Sbjct: 310 IKTTGDVSSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVE 369

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEP 339
           A   +      K V   T A  +    YG +L   P ++        +I L +  E    
Sbjct: 370 AVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPKINLSLHLEDGAK 427

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +      D+PS R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR
Sbjct: 428 ITDGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFR 487

Query: 400 NSRFNREETEIFIAATPFLV 419
           ++   +  T       P +V
Sbjct: 488 SNTNTKRRTVRMFILEPRIV 507


>gi|312880051|ref|ZP_07739851.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
 gi|310783342|gb|EFQ23740.1| type II and III secretion system protein [Aminomonas paucivorans
           DSM 12260]
          Length = 576

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/249 (24%), Positives = 99/249 (39%), Gaps = 22/249 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGF-------QHSITGSSSGPSKSFA-----------ADFG 235
            QV L+  I E+  D  +++                ++G    +            A+  
Sbjct: 313 QQVMLQARIVEIGDDGKEELESLISRVYKNWWFAFDNNGGMIGYTRINKPDLYDDDANDN 372

Query: 236 GKFVSEGGDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                 G D SV       +F +  L ALE A   R LA P++    G+ A         
Sbjct: 373 RIVKPGGLDLSVVAQNPDLNFLDAGLRALETANKGRMLASPSVVVHDGKKAKIALTENVK 432

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSY 351
           Y +     G  + +    G  + FTPTV     I + +     EV++ + G     +P  
Sbjct: 433 YISARDQAGNPTYSEERVGPTIEFTPTVGRDRVITMEMTLKTGEVTKYIRGGMGEQVPQT 492

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+ ++TV + +G   V+ GL +D     +  IP+L  IP+LG LFRN    +  TE+ 
Sbjct: 493 STREVNSTVRIRNGEPFVVGGLFRDGQTHSENKIPILGDIPLLGELFRNRTTQKIHTEVA 552

Query: 412 IAATPFLVK 420
           +   P+L+ 
Sbjct: 553 MIVIPYLLD 561


>gi|307626976|gb|ADN71280.1| general secretion pathway protein D [Escherichia coli UM146]
          Length = 421

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 55/245 (22%), Positives = 105/245 (42%), Gaps = 12/245 (4%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T   +   
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGES 297

Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                   ++  HD GV L  TP V+  G++ L I T          A D+     R+  
Sbjct: 298 AGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI-ITNQRQIQ 356

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E+  ++I  T  
Sbjct: 357 TTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKAXSNEQRIMYILLTAH 416

Query: 418 LVKPV 422
           +++P+
Sbjct: 417 IIRPL 421


>gi|145284361|gb|ABP51942.1| AscC [Aeromonas veronii bv. sobria]
          Length = 617

 Score =  155 bits (391), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 101/314 (32%), Gaps = 19/314 (6%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVL---HGMVRTIQDSQRAVELSETFLSQSG 172
            +     +   L + ++D+ +++     +       G      D      +      +  
Sbjct: 212 TDVAAPGVATILAKLLSDAGVQMVNGEGSKAATATSGQAIVQADPSLNAVIVRDAPERMA 271

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                 ++  K    + +A          I ++  + L Q+G    +   +    +    
Sbjct: 272 MYGKLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323

Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G            S+            ++ LE     + ++ PTL       A     
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHS 383

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAG 346
             +  K   S      +    YG +L  TP V+  G    I L +  E  ++      A 
Sbjct: 384 ETYYVKI--SGERVAELQGITYGTMLRMTPRVIQMGDRPEISLSLHIEDGNQKPNSAGAD 441

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+      DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+      
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDEMSENLSKVPFLGDIPYLGALFRSKDTQTR 501

Query: 407 ETEIFIAATPFLVK 420
            +       P L+ 
Sbjct: 502 RSVRLFIIEPRLID 515


>gi|121999034|ref|YP_001003821.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
 gi|121590439|gb|ABM63019.1| type II and III secretion system protein [Halorhodospira halophila
           SL1]
          Length = 372

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 121/315 (38%), Gaps = 20/315 (6%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +  E      +L      + +S  A     T              +++++  L+     Q
Sbjct: 49  VHAEAAQLAELLRDETGVLSESGHASVDERTNTLILQDTPARLEEAEQLVRELD-RANRQ 107

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV-------- 247
           V ++  I     +  +++G +  ++        +F +  G    + G             
Sbjct: 108 VMIEARIVLASGEYSRELGSRLGLSSERGDGHFAFDSLPGSNDAAVGDGLLAELPPVGEG 167

Query: 248 ------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                  G +     +  L A+E     R ++ P +     Q+A    G Q  Y+  + S
Sbjct: 168 ARLSVSVGEVGERLLQLELSAMEAEGHGRVVSSPRVLTTERQAARIEQGVQIPYQETAES 227

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            GAT+V   D  + L  TP V     + L ++  V++  +G     +PS   +   T + 
Sbjct: 228 -GATAVAFQDAALSLTATPQVTEDDAVSLALR--VTKDAVGQIYEGVPSIDTQAVTTHLR 284

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + +G TIVL G+ + + ++ ++ +P L ++P++G LFR     +   E+ +  TP LV+ 
Sbjct: 285 VQAGETIVLGGVREHEQRKQRQRVPWLGELPLIGWLFRQRMSEQSHHELLVFVTPRLVE- 343

Query: 422 VAMRDLSRPDDHYSV 436
                 S   D  + 
Sbjct: 344 -DGPSSSTAVDDAAP 357


>gi|312794853|ref|YP_004027775.1| general secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
 gi|312166628|emb|CBW73631.1| General secretion pathway protein D [Burkholderia rhizoxinica HKI
           454]
          Length = 847

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 103/296 (34%), Gaps = 46/296 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------------TGSSSGPS 227
            V++ L+     QV ++  I ++       +G Q                    +++G  
Sbjct: 401 NVIDQLDQR-RAQVYIEAVIVDMNATSGANLGIQWQGALLSNNGNNGVYGGSNFNANGSQ 459

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDR------------------FSFETVLHALERATAI 269
                   G  V++    +   +                     F    +L AL  ++  
Sbjct: 460 SIVGLSATGAIVAQDPATAAAQIGPNNLLNNGLNIGLLHRFGKVFGLGGLLQALATSSDT 519

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----------HDYGVVLHFT 319
             L+ P L  +  + A    G      T S +T   + TT           D G+ LH  
Sbjct: 520 NILSTPNLITLDNEEARIVVGQNVPVVTGSYATPTANTTTSVSAFNTFDRQDVGITLHIK 579

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P +   G + L+I  E S    G  +     S   R   +TV    G  IVL GL++D+ 
Sbjct: 580 PQISEGGVLKLQIYQEDSAVQQGTQSNPGGVSITKRSIQSTVLADDGEIIVLGGLIQDNY 639

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
                 +P L  IP+LG+LFR+    R ++ + +   P +V+  +        D Y
Sbjct: 640 ANGNSKVPWLGNIPVLGSLFRSESKTRTKSNLMVFLRPVIVRDQSTSS-QLALDRY 694


>gi|330719673|gb|EGG98224.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC2047]
          Length = 419

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 52/273 (19%), Positives = 93/273 (34%), Gaps = 45/273 (16%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------------------------TGSSSGP 226
             QV L+  I EV      Q G   S                           TG ++  
Sbjct: 125 RRQVILEAKILEVELSDGFQAGVNWSALAEVGQDKNVIFGTGLTNSVRTINPVTGDTTLT 184

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           +            S+         L+   F  ++  L    +++ L+ P ++ ++ Q A 
Sbjct: 185 NTILGTPTATTATSDSVGGVFSAALNLKDFNALIDLLSTQGSVQVLSSPRISTVNNQKAV 244

Query: 287 FTSGGQHLYKTV----------SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
              G    + T           S+++    +T    G+ L  TP +   G + L I   V
Sbjct: 245 IKVGTDEFFVTEISSETTTNTSSTTSTDVELTPFFSGIALDVTPQISEEGEVVLHIHPTV 304

Query: 337 SEPVIGVNAGDMPS---------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           SE          P+           +R+ D+ V   +G  +V+ GL+++         P 
Sbjct: 305 SEVTDQTKTVVGPNGDLVLPLALSSIRETDSIVRARNGQVVVIGGLMQNSSTDNNAKTPF 364

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L  +P+LG  FR  R +  ++E+ I   P +  
Sbjct: 365 LGDLPLLGNAFRQKRQSSVKSELVILLKPIIAD 397


>gi|258593213|emb|CBE69552.1| exported protein of unknown function [NC10 bacterium 'Dutch
           sediment']
          Length = 726

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 77/440 (17%), Positives = 139/440 (31%), Gaps = 45/440 (10%)

Query: 56  KVIILQVPVD-VQDVLV---SDPTKADV----VVHSPRTMYLFGKNVGQANVILIGHDGK 107
           K + +    D +Q + V    +   AD+         R   + G   G       G    
Sbjct: 304 KALDVPTKRDNIQRIFVYFVENAKAADLANTLNTLYGRRDLVRGAAPGT----RPGQTPA 359

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           +                              E     VV  G V  + D      + +T 
Sbjct: 360 RPGVSGPSTTTAPPPPAPGPPPAAPVPPTGAEAAPGEVV--GEVTIVTDEATNALIIKTS 417

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
                  +        V          QV +++ +A++          +  +   +   S
Sbjct: 418 PRNYEIVEATIKQLDIV--------PKQVLIELMLAQITLSDAFDFSLEQVLRSGTIMLS 469

Query: 228 KSFAADF--------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                              V+    F+    +D+  F  VL+ L   T +  LA P L  
Sbjct: 470 SVHGGPAAAAIAAFKNPSGVAPPSGFTFTTFVDKEQFRLVLNNLASVTKVEVLANPHLLT 529

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSV-------TTHDYGVVLHFTPTVLSPGRIGLRI 332
            + + A+   G +    T + S G + V          D G++L   P V     + L I
Sbjct: 530 ANNKEANIQIGQEVPIPTGTQSVGTSDVANVFSTFQRKDIGIILKIKPHVNEKRLVTLDI 589

Query: 333 QTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +TE +     V        S+      T + +    ++V+ G+++ D  +   GIP LS 
Sbjct: 590 ETENTSVAGEVPDALQGGASFNKTTTKTALVVQDSQSLVIGGIIRTDKSKGYSGIPFLST 649

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP+LG LFRN+  +   TE+ I  TP ++   +  +       +    +       R+ +
Sbjct: 650 IPLLGYLFRNTSEDLIRTELVILITPHVI--ASPEEGQALTKRFRERVET----LERLMQ 703

Query: 451 IYGPKEASEVEGQNYKGAIG 470
                 +      + KG  G
Sbjct: 704 SSPTSPSGLAPKLDDKGKDG 723


>gi|217977094|ref|YP_002361241.1| general secretion pathway protein D [Methylocella silvestris BL2]
 gi|217502470|gb|ACK49879.1| general secretion pathway protein D [Methylocella silvestris BL2]
          Length = 805

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/327 (23%), Positives = 137/327 (41%), Gaps = 29/327 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R +  +         NQ +    +K +  L+   + QV + +TIAEV  +     G Q  
Sbjct: 488 RIMADAANNSVVIYANQESYRIIEKALEQLD-RPKLQVAIDLTIAEVTLNDTLNYGVQFF 546

Query: 219 ITGSSSGPSKSFA----ADFGGKFVSEGGDFSVKGVLDRFSFE--------TVLHALERA 266
           +  S+ G   +         G      GG  S  G L  F+           +++AL + 
Sbjct: 547 LGSSNLGLGANNGFVTNTAAGVPLAQTGGVASAAGTLPGFNLTIGNALSPRAIINALHQY 606

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYGVVLHFTP 320
           T ++ L+ P+L  +  Q A+   G +   +T S++          ++   + G++L   P
Sbjct: 607 TDVKVLSNPSLVVVDNQVATLQVGDEIPIQTGSATVLSANNAVVNTIDYKNTGIILRVQP 666

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            V   G + L ++ E+S        G  P++  RK  +++ + SG T++LAGL+ D +  
Sbjct: 667 RVNFNGNVSLDVEQEISNQAGTSALG--PTFSQRKVKSSILVASGQTVLLAGLISDGVNG 724

Query: 381 LKEGIPLLSKIPILGALFRNSRFN-REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
            K GIP+  +IP+LG LF NS       TE+ I   P +++          D  +  E+ 
Sbjct: 725 TKAGIPVADQIPVLGNLFNNSSNRLVSRTELIIFIRPQIIRDGV-------DASFVAEEL 777

Query: 440 AKAFFFNRVNKIYGPKEASEVEGQNYK 466
                 N+V  IY     + +  +  +
Sbjct: 778 RSKLRGNKVGDIYPTGAVTPIPLRALQ 804


>gi|253997512|ref|YP_003049576.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
 gi|253984191|gb|ACT49049.1| type IV pilus secretin PilQ [Methylotenera mobilis JLW8]
          Length = 719

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 43/215 (20%), Positives = 86/215 (40%), Gaps = 3/215 (1%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             +   Q    +    +SS       ++      +    +S+  V         L A+E 
Sbjct: 502 THNGAVQTTLTNGGVFTSSDGQPDLMSNLAVANAAGSIAYSIYNVAAGLLLNLELTAMET 561

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               + ++ P +   +   A   +G +  Y    SS+GAT+V      + L  TP +   
Sbjct: 562 DQRGKIVSSPRVITANQHKAKIAAGTEIPYLQA-SSSGATNVAFKPAVLSLEVTPQITPD 620

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            +I + +  ++ +  +G     +PS   +  +T V + +G T VL G+ +   +     +
Sbjct: 621 EKIIMEL--DIKKDKVGQIFNGVPSIDTQNINTQVLVGNGETAVLGGIFEQIERDDVSKV 678

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           P    +P+ G LF+      ++TE+ I  TP +V 
Sbjct: 679 PFFGDLPLFGNLFKKKTRQNDKTELLIFITPKIVD 713


>gi|91224449|ref|ZP_01259711.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
 gi|91190791|gb|EAS77058.1| putative type III secretion protein YscC [Vibrio alginolyticus
           12G01]
          Length = 624

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +  +   L+R ++    +V   S        V +     ++ + +            
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257

Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
           A   ++  +N + +                    Q  ++V  +I ++  + L Q+G    
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317

Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
                G++         D     V+ G   + K +LD  +       +  LE   + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
           + PTL       A   +      K V   T A  +    YG +L   P ++         
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +  E    +      D+PS R  +  T   +  G ++++ G+ +D++      +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LGALFR++   +  T       P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527


>gi|269967259|ref|ZP_06181323.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
 gi|269828115|gb|EEZ82385.1| putative type III secretion protein YscC [Vibrio alginolyticus 40B]
          Length = 624

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +  +   L+R ++    +V   S        V +     ++ + +            
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVASAS-----SKEVTSPDKPVKSNKTASVH-------GG 257

Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
           A   ++  +N + +                    Q  ++V  +I ++  + L Q+G    
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317

Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
                G++         D     V+ G   + K +LD  +       +  LE   + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
           + PTL       A   +      K V   T A  +    YG +L   P ++         
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +  E    +      D+PS R  +  T   +  G ++++ G+ +D++      +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LGALFR++   +  T       P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527


>gi|171911307|ref|ZP_02926777.1| putative general secretion pathway protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 821

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 65/359 (18%), Positives = 116/359 (32%), Gaps = 97/359 (27%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
           A  ++ T        Q      +  +  L  A   Q+ +     EV +    ++GF    
Sbjct: 426 ATFVAATSQLIVRNTQPNLDQVEAFVEGLTKAVPQQIYITTKFVEVSQKNTDELGFDWLL 485

Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242
               I G +     + A      F  +G                                
Sbjct: 486 GQFDIGGRTFASGGTAATSSNYSFTQDGTAIGGYSVTSGNRSGSSAIAADSIDGLISGQS 545

Query: 243 -------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                  G F++ GV     F+  + AL +   +  ++ P++T  SGQ A+     + +Y
Sbjct: 546 QASSVAPGVFTLAGVFTDPQFQVTIRALSQKKGVDLMSAPSVTTRSGQRATVEVIREFIY 605

Query: 296 KTVSSS----------------------------TGATSVTTHDYGVVLHFTPTVLSPG- 326
            T                                T  T+      GV L   P +   G 
Sbjct: 606 PTEFDPPQIPQNFGATSSTSTTGTSSTSSFPVTPTTPTAFEMRPVGVRLEVDPVIGPDGY 665

Query: 327 RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVRKADTTVEL 362
            I L +  EV+E                          +  N  + P +  RK  T V +
Sbjct: 666 TIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENKIEQPVFSTRKVTTAVTV 725

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G T+ + GL+++D+Q +++ +P+L  +P LG LF++   +  +  + I  T  L+ P
Sbjct: 726 WDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGRLFQSKAEDHFKRNLMIFVTAKLIDP 784


>gi|332186824|ref|ZP_08388566.1| general secretion pathway protein D [Sphingomonas sp. S17]
 gi|332013157|gb|EGI55220.1| general secretion pathway protein D [Sphingomonas sp. S17]
          Length = 739

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 72/460 (15%), Positives = 147/460 (31%), Gaps = 70/460 (15%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
            +   +  I  +N+  +      + +  +I++ L+     +   +++ V + +   AD  
Sbjct: 216 STGVSVVAIDSSNSIALRGDPSSVARFAQIALDLDNKA--KSGTEIRVVFLQN---ADAE 270

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
              P    +  + VGQ    +      +        +   A      +R    +  + + 
Sbjct: 271 QLLP----VLQQLVGQTPDPVQETTLSRGSFTQTNNQAGSAAGTSIAQRVQPVAQPQAQN 326

Query: 141 VSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
                  +G    I       +                         +V+  L++   +Q
Sbjct: 327 APGAGGQNGQQPAISTQGGRTAAVVTRFVGANAIVIAGPADIQRQIGEVIRQLDVR-REQ 385

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------------------ 237
           V ++  +AEV     +++G Q  +   S G   +                          
Sbjct: 386 VLIEAIVAEVSDQTARRLGAQFLLGSLSGGAFAASTYGNTAPNILQIAGAVGAQTLGGTR 445

Query: 238 -------------------------------FVSEGGDFSVKGVLDRFSFETVLHALERA 266
                                            + GG     G +    F  +++A++  
Sbjct: 446 TIVTAPDGTRTETNVPNPAFSQLTQSAVQSILGTTGGFAGWGGQVGDTVFGAIINAVKSD 505

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGVVLHFTPT 321
           T    L  P +  +  Q A    G +    T  +          +V   + G+ L   P 
Sbjct: 506 TTSNLLQVPHIITLDNQQAHSLVGQEIPVTTGQALSNNFDNAFRTVQRQNVGIQLDVKPQ 565

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSY-RVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V + G + L ++ EVS     V++ +       R  +       G   V+ GLL D+ ++
Sbjct: 566 VNAGGSLKLYVRLEVSSIAGPVSSNNSELILNKRAFENVFTPDDGQITVIGGLLDDNERR 625

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             E IPLL  IP LGALFR+   +R +T + +   P +++
Sbjct: 626 TIEKIPLLGDIPGLGALFRSKARSRSKTNLMVFIRPTILR 665


>gi|313680282|ref|YP_004058021.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313152997|gb|ADR36848.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 518

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 70/305 (22%), Positives = 130/305 (42%), Gaps = 12/305 (3%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L   ++   A S I+VE  +    +   +          +     L  +G  +      +
Sbjct: 220 LAEAMQARQAQSQIKVEAGAGEQQVQATIPEKSTISIVADTRTNTLIVTGTAKQLELVEE 279

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            +  L       QV ++V I EV + +++ +G + +     +  S          F +  
Sbjct: 280 LIKKLDF--PVQQVNVQVRIQEVTQTLVRNLGLKWNTISGGNIVSSIVDNGLSLIFDA-- 335

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                   L   +    L ALE+    RT+ +  +T ++ Q+    SG     K V    
Sbjct: 336 -----TRSLASLNIVATLEALEKQGLSRTVNDSNITVLNNQTGFIQSGFTIFVKRVVGDK 390

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVE 361
                  +D GV++  TP + + G+I L++++EVS+        GD+     +K++TT+ 
Sbjct: 391 VEKV--PYDIGVIVRVTPQITADGQIVLKVESEVSDIKERNPVDGDVDVLSKQKSETTLR 448

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           L +G T+VL GL+K    +  +G+P+L  IP+LG+LF+ +  N E+ E+ I  T  +V  
Sbjct: 449 LDNGQTVVLGGLIKTKRDKTTQGVPVLMHIPVLGSLFKQTTVNNEDNELLIVITANIVND 508

Query: 422 VAMRD 426
                
Sbjct: 509 ATAAA 513


>gi|167589893|ref|ZP_02382281.1| type II and III secretion system protein [Burkholderia ubonensis
           Bu]
          Length = 773

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 134/349 (38%), Gaps = 35/349 (10%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V    T+ ++     +A      +  +  +    L   D   +   LR+ I   ++ V+
Sbjct: 234 KVLDRHTLLIYPSQPDKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 288

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + VV+     TIQ +                        ++V+  L+I   + VTL 
Sbjct: 289 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 323

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V + EV  +    +G Q+      S              +       V    +       
Sbjct: 324 VQVLEVNMNDSLDLGVQYPGKVQFSALGGVEGGALTLGDLLRLNRDRVGVASESGGLALA 383

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
           +  L++    +TLA P +   + + A+   G +    T +++ G    SV+  D G++L 
Sbjct: 384 IDMLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 443

Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             P +     + +++  EVS               +   R A+T +   +G T +LAGL+
Sbjct: 444 VEPRISLNEEVSVKVNMEVSSILSKETTKTGLVAYALGTRNAETLMTAKNGETQILAGLV 503

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           K +  +   G+P +S +P++G LF ++  + E TEI +  TP + + + 
Sbjct: 504 KRNESENIAGLPGMSGLPVIGRLFGSNGRSNERTEIVLLITPHIERNLD 552


>gi|54124974|gb|AAV30242.1| YscC [Aeromonas hydrophila]
          Length = 614

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 99/311 (31%), Gaps = 19/311 (6%)

Query: 119 DIAHLEMTLRRFIADSNIR-VEMVSDTVVL--HGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           D   +   L R ++D+ ++ V       V    G      D      L      +     
Sbjct: 215 DAPGVATILSRLLSDAGVQMVNGEGAKGVGTNSGQAIVQADPSLNAVLVRDAPERMAMYG 274

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
              ++  K    + +A          I ++  + L Q+G    +   +    +      G
Sbjct: 275 KLIAALDKPAARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIKTTG 326

Query: 236 G--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                       S+            ++ LE     + ++ PTL       A       +
Sbjct: 327 DRKGIEGGAALGSLVDSRGLDYLLARVNLLENEGNAQVVSRPTLLTQENTQAVIDHSETY 386

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMP 349
             K   S      +    YG +L  TP V+  G    + L +  E  S+         +P
Sbjct: 387 YVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGSQKPNSSGLDGIP 444

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +      DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+         
Sbjct: 445 TISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTRRQV 504

Query: 410 IFIAATPFLVK 420
                 P L+ 
Sbjct: 505 RLFIIEPRLID 515


>gi|192358819|ref|YP_001982858.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
 gi|190684984|gb|ACE82662.1| MSHA biogenesis protein MshL [Cellvibrio japonicus Ueda107]
          Length = 578

 Score =  154 bits (389), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 61/281 (21%), Positives = 102/281 (36%), Gaps = 43/281 (15%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE--- 241
           +    ++ + QV L+  I EVR     + G          G S            S    
Sbjct: 275 LERSELSAKRQVILETKILEVRLSEGFEAGVNWGAISGQLGYSYGSGRGTISASDSLEMN 334

Query: 242 --------------------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                               GG     G++       +L  LE   A++ L+ P ++ ++
Sbjct: 335 YGPGFQMTDATRTITESSEYGGKDLFAGLVQVADITKLLSLLETQGAVQVLSSPRVSTVN 394

Query: 282 GQSASFTSGGQHLYKTVSSSTGATS-----------VTTHDYGVVLHFTPTVLSPGRIGL 330
            Q A    G    + T  SS   T+           ++    G+ L  TP +   G + L
Sbjct: 395 NQKAVIRVGYDEYFVTGISSNTTTNAAAITNTPNIELSPFFSGISLDVTPQISEAGEVIL 454

Query: 331 RIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            I   VSE    +    +             +R++D+ V+  +G  IVL GL+ +  +Q 
Sbjct: 455 HIHPIVSEVTDQLKVFTVGDENFSLPLALRGIRESDSIVKAANGQVIVLGGLMTESNRQT 514

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
               PLL  IPI+ +LFR    ++ +TE+ I   P +V   
Sbjct: 515 DGKRPLLGDIPIVNSLFRTKNKSKSKTELVILLRPIVVDDT 555


>gi|82703698|ref|YP_413264.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
 gi|82411763|gb|ABB75872.1| type II and III secretion system protein [Nitrosospira multiformis
           ATCC 25196]
          Length = 749

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/456 (17%), Positives = 168/456 (36%), Gaps = 64/456 (14%)

Query: 2   RYLQRTFFTMMSIFLFSSNP-----SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK 56
           R  +R    +  + + ++       +  K P   E     +      + +   I++  +K
Sbjct: 152 RDARRLIQRITEMEVQAAQAGPILKTAFKKPITLEFRDTGLKSVFEILARTGGINVVFDK 211

Query: 57  VIILQVPVDVQDVLVSDPTKADV------------VVHSPRTMYLFGKNVGQANVILIGH 104
            +          + V +    DV             V +  ++ ++     +        
Sbjct: 212 DVKQDSK---TTIFVRETNIEDVFKLLLVTNQLAHKVLNENSVLIYPNTPAK-----QKE 263

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             + M+    +   D+  +   ++  I   ++ V+   +  V+            A+ L+
Sbjct: 264 YQELMVRSFFVTNTDVKQMVAMVKGLIKTKDMHVDEKLNLFVMKDTP-------EAIRLA 316

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SIT 220
           E  ++ +                     + +V L+V + E+ R+ L  +G Q+    ++ 
Sbjct: 317 ERLVTLNDL------------------ADPEVMLEVEVLEIGRNKLLNLGLQYPEKINVN 358

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET----VLHALERATAIRTLAEPT 276
             ++  +   A     +    G + +   + +   F      +++  ++   I  LA P 
Sbjct: 359 YLTAASAAGAAPFPPFQISRAGVNGNGSNLDNLIGFVANPALIVNLKQQDGLINVLANPR 418

Query: 277 LTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           +   + + A    G +    T +++     A+SV+  D G+ L    T+     + +++ 
Sbjct: 419 IRVKNREKAKVLIGDKVPVVTTTAAANVGVASSVSYLDVGLKLDVESTISLQDEVSMKVS 478

Query: 334 TEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            EVS  V        G       R A TT+ L  G T VLAGL+ DD +     +P L++
Sbjct: 479 LEVSNIVKEVPVTGGGLAYQVGTRTAATTLALKDGETQVLAGLISDDERTTLSKVPGLAE 538

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +P +G LF N    R +TEI +  TP +V+ +A   
Sbjct: 539 LPWIGKLFINKNVVRNKTEIALLITPRIVRNIARPA 574


>gi|254522174|ref|ZP_05134229.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
 gi|219719765|gb|EED38290.1| fimbrial assembly protein [Stenotrophomonas sp. SKA14]
          Length = 638

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 100/284 (35%), Gaps = 54/284 (19%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------------------- 225
              DQV ++  I        +++G +  I+GS                            
Sbjct: 350 RPVDQVLIESRIVIATDTFARELGAKFGISGSRDNVYFSGDLESNRKTRQSQADTSAANA 409

Query: 226 ----------------------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
                                  ++    +      +  G  ++  +   +  +  L A+
Sbjct: 410 KAYRDWEAGGSVGPAPVPLLPAITRGLNFNLPAASTATPGSLALSILNAGYLLDVELSAM 469

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFT 319
           +       ++ P +   + + A    G +  Y T+S          +V   +  + L  T
Sbjct: 470 QEEARGEVISNPRVVTTNQREALIKQGKEIGYVTISGGGTGGVATPNVQFKEVVLELKVT 529

Query: 320 PTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           PT+ +  R+ L +Q    EV   +     G +P    R+ +T V +  G T+V+ G+ + 
Sbjct: 530 PTITNDNRVFLNMQLKKDEVERLIQLQGYGTVPEINRREVNTAVLVDDGQTVVIGGVYEF 589

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +     +P L  +P LG LF+    ++++ E+ +  TP +++
Sbjct: 590 TDRSSVSKVPFLGDVPFLGNLFKKRGRSKDKAELLVFVTPKVLR 633


>gi|312883863|ref|ZP_07743580.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368321|gb|EFP95856.1| hypothetical protein VIBC2010_01233 [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 619

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 54/274 (19%), Positives = 101/274 (36%), Gaps = 31/274 (11%)

Query: 175 QYANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQ 216
             A+  ++  +N + +                    Q  ++V  +I ++  + L Q+G  
Sbjct: 251 SAASVEAEPGLNAIIVRDTQARLPLYRQLVAQLDQPQSRIEVALSIVDISANNLSQLGVD 310

Query: 217 HSI---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
                  G++     +   D     V  G   +   +LD  +       ++ LE   + +
Sbjct: 311 WRAGVSVGNNKIVDINTTGDVTNGDVLLGSGQTFNSLLDATNLNFLLAQINLLESQGSAQ 370

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---- 326
            ++ PTL       A  ++      K V   T A  +    YG +L   P ++       
Sbjct: 371 VVSRPTLLTQENVEAVLSNSTTFYVKLVGRETAA--LDEVTYGTLLRIVPRIVGDRFAER 428

Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             I L +  E    +       +PS R  +  T   +  G ++++ G+ +D+I Q    +
Sbjct: 429 PEINLSLNLEDGAQIPDNVIDGVPSIRKTEISTLATVKQGQSLLIGGVYRDEISQQLRKV 488

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           PLL  IP LGALFR++      T       P +V
Sbjct: 489 PLLGDIPYLGALFRSTNDITRRTVRMFIIEPRIV 522


>gi|258406319|ref|YP_003199061.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
 gi|257798546|gb|ACV69483.1| type IV pilus secretin PilQ [Desulfohalobium retbaense DSM 5692]
          Length = 719

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 99/276 (35%), Gaps = 18/276 (6%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            +  R  + + T        +      + V++ L+   E QV ++  I   +    + +G
Sbjct: 450 SERGRIGQDARTNTLIVSDTRDNIRKVRSVIDRLD-RPEPQVLIEARIVYAKDAFKRSLG 508

Query: 215 FQHSITG-----------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
              +               S               V+  G       +D F  +  L   
Sbjct: 509 VSLAGEYYDDVGAVGQYEKSLSAGVLQGFTPEVSTVNMQGALDKISGIDLFELDAQLKLG 568

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E     +T++ P L  ++ Q A   S G  +     S +G T +   +  + L   P + 
Sbjct: 569 ELKGVTKTISSPRLVTLNNQQAEI-SQGIKIANESESESGGTDIEYTEATLKLAVQPQIT 627

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
              ++ L +  ++++     N  D      R A T + + +  T+VL G+ +      K 
Sbjct: 628 PDDKVILDL--DIADDSPTENGED---IETRTARTKLLVENQETVVLGGVYQVIENNEKN 682

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P L  +P+LG LF+    N E  E+ I   P ++
Sbjct: 683 QVPGLGDVPLLGWLFKTDNVNNENRELLIFIRPTIL 718


>gi|330863522|emb|CBX73638.1| general secretion pathway protein D [Yersinia enterocolitica
           W22703]
          Length = 577

 Score =  154 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 93/247 (37%), Gaps = 12/247 (4%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
             +        +V+  L+I    QV ++  I E +      +G Q +            +
Sbjct: 330 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 388

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S   +             +     + +++ +  AL   +    LA P++  +    A F
Sbjct: 389 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFTALATNSNNNILATPSIVTLDNMEAEF 448

Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             G +    T + +T       S++    GV+L   P +     + L I+ EVS      
Sbjct: 449 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 508

Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +         +  R  +  V + SG T+V+ GLL   I ++   +PLL  IP +G LFR 
Sbjct: 509 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDKKINKIINKVPLLGDIPFIGGLFRQ 568

Query: 401 SRFNREE 407
           S+   ++
Sbjct: 569 SKERLKK 575


>gi|291333680|gb|ADD93369.1| type II and III secretion system protein [uncultured marine
           bacterium MedDCM-OCT-S01-C143]
          Length = 437

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 107/305 (35%), Gaps = 58/305 (19%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----SITGSSSGPSK 228
            +     S ++++  L++    QV ++  I EV      Q G        ++ S  G   
Sbjct: 21  ASGEDYRSMRRLIEKLDVP-RTQVYVEAAILEVTVTDKGQRGLDWHSPFGVSDSGIGGVD 79

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDR----------------------------------F 254
           S +    G   S      V   L                                     
Sbjct: 80  SGSVGNLGFIQSATSSGGVSPTLGALAAPESLLTVAGGSLGGIVGEGVSIPIGDSTLTLP 139

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------- 300
           +F  +L  LE ++    L+ P +     + AS   G +  ++  +S              
Sbjct: 140 AFGVILKWLETSSTANILSTPHILTTDNEEASIEVGQKIPFRRGTSIPAAAGALGGLGGG 199

Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                 +  +S    D  + L  TP V    ++ L I  ++ +      A   P    R 
Sbjct: 200 SLGGLGSLFSSTDRIDVSLKLTLTPHVNERNKVRLDIDQQIEDVAGIDEATGQPITAKRS 259

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T V +    TIVL GL++D + + +  IP+L  +P++G +FR    + E+  + +  T
Sbjct: 260 AKTVVVVDDQQTIVLGGLIRDRVSEGESKIPVLGDLPLIGWMFRQHTKDVEKVNLLLVLT 319

Query: 416 PFLVK 420
           P++V+
Sbjct: 320 PYVVR 324


>gi|307720788|ref|YP_003891928.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
 gi|306978881|gb|ADN08916.1| pilus (MSHA type) biogenesis protein MshL [Sulfurimonas
           autotrophica DSM 16294]
          Length = 542

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 102/290 (35%), Gaps = 33/290 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------SITGSSSGPS 227
           +  +  L    + QV + V +  V     K  G                 +   ++ G +
Sbjct: 226 ESYLKKLQDKVKLQVLIDVQLLSVTMSKGKSTGIDWKQLYALQNIKLSASTANYNNIGTT 285

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                          G   +  +        V+  L+    + +++ P +  ++ Q A  
Sbjct: 286 IPADGIITDTAAVGAGASQLLSMSASGQLTEVIKFLKTQGDVNSISNPKVLTLNNQPALI 345

Query: 288 TSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           T+G ++ YK +SS+                +V +   GV+L  TP +     I L+I   
Sbjct: 346 TAGTEYFYKIISSTNQQGTGGGVAATTQNDTVNSVFAGVLLTITPEISDDKTITLKINPS 405

Query: 336 VSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +SE    ++          P    R+  + V +  G  I+L GL+          +P+L 
Sbjct: 406 LSETTTDISQTSNSGRDMPPDLNRRQLSSVVTVKDGNRIILGGLINSKNTSDTNQVPILG 465

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDD 439
            IP+LG LF++    +   E+ I   P ++       +S  D  Y    D
Sbjct: 466 SIPVLGYLFKHEEIVKTVEELVIIIEPHIIH-KEKDSISLSDLGYEGLSD 514


>gi|77917753|ref|YP_355568.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77543836|gb|ABA87398.1| putative type II secretion system protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 779

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 65/362 (17%), Positives = 131/362 (36%), Gaps = 39/362 (10%)

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
               + +++ ++  +  +             +    L      H    LR  +  +N+ V
Sbjct: 243 AKPLNDKSVLIYPNSTDKT-----RQYDDYKIKTYYLSHISAKHAVNLLRTMLKINNLFV 297

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               + +V         +    ++L+E  L  +                     + +V  
Sbjct: 298 HEERNALVFR-------ERPEVIQLAEQILDAND------------------RADSEVLF 332

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF-- 256
           ++ + EV      + G   +    S G +K       G    +     V+      S   
Sbjct: 333 ELELIEVSHSDNWKFGPSLNPNSVSLGLAKGGNIVASGLSAGDATTNLVQSFSSLESVYT 392

Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312
               V    +       LA P +   + + A+   G +    TV+++   +  ++   D 
Sbjct: 393 LPTVVFDLQKTLVDSEILATPRIRVKNREKANVHVGNREPVITVTTTGETSTDNIQYVDV 452

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           GV L   P +     +   +  EVS         N     S    KA TT+ L +G   V
Sbjct: 453 GVKLDIEPKIQLDDTVVTNLSLEVSGVTEKNTTANGSLALSISTTKAQTTLTLKNGERTV 512

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
           + GL++DD  + ++ IPLL  +P++G LF N   ++++ EI ++ TP +++ V + D + 
Sbjct: 513 IGGLIRDDSTKTRKIIPLLGDLPLIGRLFTNHNKDKKKREILLSITPHILQNVDLPDRTL 572

Query: 430 PD 431
            D
Sbjct: 573 TD 574


>gi|171910644|ref|ZP_02926114.1| type II/III secretion system protein [Verrucomicrobium spinosum DSM
           4136]
          Length = 816

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 67/367 (18%), Positives = 117/367 (31%), Gaps = 105/367 (28%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-- 217
           AV ++ T        Q      +  +  L      Q+ +     EV +    ++GF    
Sbjct: 415 AVFVAATSQLIVRNTQPNLDQVEAFVEGLTKQVPQQIYITTKFVEVSQKNTDELGFDWLI 474

Query: 218 ---SITGSSSGPSKSFAADFGGKFVSEG-------------------------------- 242
               I G + G   +      G   S                                  
Sbjct: 475 GGFDIGGRAFGSGGTTGNSSNGPVSSSNYPFSQSGVPIGQNPVTAGLRSGTSAIAADSID 534

Query: 243 --------------GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                         G F++ GV     F+ V+ AL +   +  ++ P++T  SGQ A+  
Sbjct: 535 GLISGQSLVSSAAPGVFALAGVFTDPQFQVVIRALSQKKGVDLMSAPSVTTRSGQRATVE 594

Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319
              + +Y T                                 T  T+      GV +   
Sbjct: 595 VIREFIYPTEFDPPQIPQSVGATTTTGGVGLGSSTAAFPVTPTTPTAFEMRPVGVRMEVD 654

Query: 320 PTVLSPG-RIGLRIQTEVSE------------------------PVIGVNAGDMPSYRVR 354
           P +   G  I L +  EV+E                          +  N  + P +  R
Sbjct: 655 PVIGPDGYTIDLNLAPEVTEFEGFINYGSPINTASTDALGNPTTVTLTENRIEQPVFSTR 714

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           K  T V +  G T+ + GL+++D+Q +++ +P+L  IPILG LF++   +  +  + I  
Sbjct: 715 KVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDIPILGRLFQSKAEDHFKRNLMIFV 774

Query: 415 TPFLVKP 421
           T  L+ P
Sbjct: 775 TAKLIDP 781


>gi|162457505|ref|YP_001619872.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
 gi|161168087|emb|CAN99392.1| general secretion pahtway protein D [Sorangium cellulosum 'So ce
           56']
          Length = 864

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 94/285 (32%), Gaps = 54/285 (18%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236
             QV ++  I +V        G  +      +G +   +  +GG                
Sbjct: 448 RRQVFIEAVIMDVNVSRSLDFGIGYHAGAPFNGLNPDDSVVYGGNNIRQSVIGLPAQLGA 507

Query: 237 ------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      G +  +   +   +F  VLHAL +      LA P + A    +A  + G
Sbjct: 508 LALGIKGPAITGSNNILGTGISIPAFGVVLHALAQDGDSNVLATPHILATDNVAAEISIG 567

Query: 291 GQHLYKTVSSSTGATS-------------------------------VTTHDYGVVLHFT 319
                +T     G                                      D G  +   
Sbjct: 568 QNIPLQTNVGGGGLNQLASLAGGAGAAAGGLGGLAGLLGGLGGVGGTAARQDVGTKIKVV 627

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           P V    ++ L +  E+S+    +           R A TT+ +    T+V+ GL++D +
Sbjct: 628 PHVNDSDQVRLELSEEISDAGAPLEGALGAIPINKRTASTTLVVRDQQTVVIGGLMRDGM 687

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
              +  IP+L  IP+LG LFR     + +T + +  TP++++   
Sbjct: 688 TTSETKIPVLGDIPVLGFLFRQRVKTKTKTNLLLVLTPYVIRDQD 732


>gi|311693304|gb|ADP96177.1| LOW QUALITY PROTEIN: pilus (MSHA type) biogenesis protein MshL
           [marine bacterium HP15]
          Length = 570

 Score =  154 bits (388), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/267 (19%), Positives = 102/267 (38%), Gaps = 30/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA--------AD 233
           ++ +    +  + QV L+  I E+  +   Q G   S   S+S  + S          A 
Sbjct: 265 EEYLRRTELIMQRQVILEAKILEIALNEGYQQGINWSDIQSASSITASDGLPEDFTAQAL 324

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G    +          +    F  ++  L +   ++ L+ P ++ ++ Q A    G   
Sbjct: 325 AGQVIQTSDIGGLFSASVRAGDFTGLIELLGKQGNVQILSSPRISTVNNQKAVIKVGTDE 384

Query: 294 LYKT-------------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            +                 S++ +  +T    G+ L  TP +   G I L +   VSE  
Sbjct: 385 FFCHRYDFDDNNSAVTATDSTSTSVELTPFFSGISLDVTPQISESGVITLHVHPSVSEVT 444

Query: 341 IGVNAGDM---------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                  +          S  VR+ D+ +   SG  +V+ GL+++  +     +P  S+I
Sbjct: 445 DQEKVITIGERDVTLPLASSTVRETDSVIRAESGQIVVIGGLIQNSSEDNNSAVPFFSEI 504

Query: 392 PILGALFRNSRFNREETEIFIAATPFL 418
           P++G LF+  RF   ++E+ I   P +
Sbjct: 505 PLVGELFKQRRFQSRKSELVILLRPVV 531


>gi|51594667|ref|YP_068858.1| type III secretion protein EscC/SpiA, outer membrane pore [Yersinia
           pseudotuberculosis IP 32953]
 gi|51587949|emb|CAH19552.1| possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia pseudotuberculosis IP 32953]
          Length = 523

 Score =  153 bits (387), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++  +   + L+        +      S+    N + I      
Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +     F
Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                +     + D  +F   L+AL++ +  R L++P++  ++   A          K  
Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
                   + +   G +L  TP ++   G   + +   + +     +      +P  R  
Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514

Query: 415 T 415
            
Sbjct: 515 K 515


>gi|22124429|ref|NP_667852.1| secretin [Yersinia pestis KIM 10]
 gi|45440265|ref|NP_991804.1| type III secretion protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|150260696|ref|ZP_01917424.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165926705|ref|ZP_02222537.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167402490|ref|ZP_02307945.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|218927462|ref|YP_002345337.1| putative type III secretion protein [Yersinia pestis CO92]
 gi|229836509|ref|ZP_04456675.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|229840118|ref|ZP_04460277.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842199|ref|ZP_04462354.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229904060|ref|ZP_04519173.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|294502332|ref|YP_003566394.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|21957215|gb|AAM84103.1|AE013653_3 putative secretin [Yersinia pestis KIM 10]
 gi|45435121|gb|AAS60681.1| possible type III secretion protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|115346073|emb|CAL18941.1| possible type III secretion protein [Yersinia pestis CO92]
 gi|149290104|gb|EDM40181.1| possible type III secretion protein [Yersinia pestis CA88-4125]
 gi|165921328|gb|EDR38552.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|167048140|gb|EDR59548.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|229679830|gb|EEO75933.1| possible type III secretion protein [Yersinia pestis Nepal516]
 gi|229690509|gb|EEO82563.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696484|gb|EEO86531.1| possible type III secretion protein [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229706193|gb|EEO92201.1| possible type III secretion protein [Yersinia pestis Pestoides A]
 gi|262360412|gb|ACY57133.1| possible type III secretion protein [Yersinia pestis D106004]
 gi|262364362|gb|ACY60919.1| possible type III secretion protein [Yersinia pestis D182038]
 gi|294352791|gb|ADE63132.1| possible type III secretion protein [Yersinia pestis Z176003]
 gi|320013878|gb|ADV97449.1| putative type III secretion protein [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 523

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++  +   + L+        +      S+    N + I      
Sbjct: 221 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 280

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +     F
Sbjct: 281 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 336

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                +     + D  +F   L+AL++ +  R L++P++  ++   A          K  
Sbjct: 337 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 395

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
                   + +   G +L  TP ++   G   + +   + +     +      +P  R  
Sbjct: 396 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 454

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 455 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 514

Query: 415 T 415
            
Sbjct: 515 K 515


>gi|320355296|ref|YP_004196635.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320123798|gb|ADW19344.1| type II and III secretion system protein [Desulfobulbus propionicus
           DSM 2032]
          Length = 586

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 106/315 (33%), Gaps = 35/315 (11%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVT 197
              D V       ++    +A  + +  +         +        +N L  +   QV 
Sbjct: 272 AKGDAVGSEEKTMSMGAKDKASFVIDRNVGLITVTAKPSLLKVVDDYINNLKKSLYKQVN 331

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGDFSVKG 249
           ++  I EV      +IG   S        S +      G+               F  + 
Sbjct: 332 IEAKIIEVYLQDNSKIGLDWSSVLKDFQISATTFFGNNGQVHPRTTADPDDFSNTFVSRV 391

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +   +F+  L+ALE       LA P LT ++GQ A  + G    Y    +    +    
Sbjct: 392 EIPSLTFDVFLNALEEQGDTHVLANPKLTVLNGQPAIISVGKDVAYIKSVTREKDSDTED 451

Query: 310 HDY---------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-------------- 346
             Y         G+ L    ++L   ++ L +    ++     + G              
Sbjct: 452 ITYSAEVGNVVQGIALGVMASILDENKVILHLTPITTDLANATSDGEVPITTIGEGETAM 511

Query: 347 --DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P  +VR+  T VE+ +G  +++ GL+     +     P L  IP++  LF      
Sbjct: 512 SLGLPQVKVREMSTMVEVENGEMLIIGGLIDSIEGKTGAFAPGLGSIPVVKYLFGVEEKT 571

Query: 405 REETEIFIAATPFLV 419
            ++ E+ I  TP ++
Sbjct: 572 LQKRELVILLTPRII 586


>gi|332295419|ref|YP_004437342.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
 gi|332178522|gb|AEE14211.1| type II and III secretion system protein [Thermodesulfobium
           narugense DSM 14796]
          Length = 630

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 106/254 (41%), Gaps = 13/254 (5%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
             +     +++++  L+   + Q+ ++V + E+    +KQ+G Q           +    
Sbjct: 382 APEDKQKIAEELLQNLDKPLK-QIEVQVMVIELDNQGIKQLGIQW------PNNIQFSGN 434

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             G +        S        +    L+A       + L++P + A+ GQ +   +G +
Sbjct: 435 ATGTRTYGTSKSKSSVYTGTISNITASLYAQLNNNNAKILSDPRILALDGQDSYVFAGDK 494

Query: 293 HLYKTVSSSTGATSVTTHD---YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAG 346
                VSS+TG     T +    GV+L  TP +   G I + +   VS     V  +   
Sbjct: 495 LYIPQVSSATGGNVTYTTNEYDVGVLLKITPFIGENGEITIHVTPSVSAFNGDVTQLQIN 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
              +  +R+AD T  +  G T  + GL+ D+ ++    +P L  +P+LG +FR     + 
Sbjct: 555 QPFTTTIREADVTARVKDGQTFYIGGLISDEQRKQTISVPGLGNMPLLGPMFRYDYNMKS 614

Query: 407 ETEIFIAATPFLVK 420
            TE+    TP +VK
Sbjct: 615 RTEVIFLLTPHIVK 628


>gi|87311311|ref|ZP_01093433.1| general secretion pathway protein D (precursor) [Blastopirellula
            marina DSM 3645]
 gi|87286051|gb|EAQ77963.1| general secretion pathway protein D  (precursor) [Blastopirellula
            marina DSM 3645]
          Length = 1199

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 125/323 (38%), Gaps = 53/323 (16%)

Query: 150  MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRR 207
                 Q ++  + + ETF +            +  K++  L+      V+++V IA+VR 
Sbjct: 742  TSSFQQVAREVIVVPETFSNSLIITATPRYFKQIVKIVEELDAR-PPMVSIQVLIADVRL 800

Query: 208  DILKQIGFQHSITGS------------------------------------SSGPSKSFA 231
              ++++GF+  +  S                                    S+  S+  +
Sbjct: 801  GKIEELGFEFGLQDSLLFDRSTVSSGQLDPGYNFNNAALGNSSSAASLATASAVGSQGLS 860

Query: 232  ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                G+     G           S   ++ AL++   +  LA P +  +  Q A    G 
Sbjct: 861  DLGLGRTNPALGYGGFVFSAASESVNVLIRALQQDNRMEVLARPHVMTMDNQPAFIQVGQ 920

Query: 292  QHLY---KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            +  Y     V++     S+T  + GV+L+  P +   G + + +Q E SE     +   +
Sbjct: 921  RVPYITDTQVTNQGTVNSITLENTGVILNVIPRISPDGMVVMYVQAERSEVGNEADGIPI 980

Query: 349  -----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                       P    + A TTV   SG TIVL GL++     +   +PLL  IP++G+L
Sbjct: 981  SINQNGDVIRAPRINTQTATTTVSARSGQTIVLGGLIQKRTTVVSRRVPLLGDIPVVGSL 1040

Query: 398  FRNSRFNREETEIFIAATPFLVK 420
            FR   F+ + +E+ I  TP +V 
Sbjct: 1041 FRYDSFDGDRSELMIILTPTVVD 1063


>gi|331004879|ref|ZP_08328296.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
 gi|330421333|gb|EGG95582.1| MSHA biogenesis protein MshL [gamma proteobacterium IMCC1989]
          Length = 553

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 60/275 (21%), Positives = 114/275 (41%), Gaps = 23/275 (8%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           ++         ++ ++ +    ++ + QV ++  I EV+     Q G   +         
Sbjct: 254 VAIVTAMPKELAAVRRFLENTRLSVKRQVIIEAKILEVQLSKNHQTGVNWNAINGQLLLG 313

Query: 228 KS---FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
           K+   F        +SEG       ++      T+L  LE    ++ L+ P ++ ++ Q 
Sbjct: 314 KNASDFDTGVTINEISEGVGEVFSSLIRISDTSTLLSLLETQGEMQVLSSPRVSTVNNQK 373

Query: 285 ASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
           A    G    + T  S           S+    +++   G+ L  TP +   G + L I 
Sbjct: 374 AVIRVGTDQFFVTGISNSTISNASSTTSSPDIELSSFFSGISLDVTPQISDEGDVILHIH 433

Query: 334 TEVS-------EPVIGVNAGDMPSY--RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +S         V+G +A  +P     +R++D+ V+  SG  IVL GL+++ I  +   
Sbjct: 434 PVISTVTEEQKNIVVGDSAFSLPLALRDIRESDSIVKAKSGQVIVLGGLMQERINHVGGK 493

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            P LS IP+ G LF ++   R ++E+ I   P +V
Sbjct: 494 RPGLSDIPVAGGLFNSNTDIRSKSELIILLKPTVV 528


>gi|262284505|gb|ACY41042.1| VscC [Vibrio alginolyticus]
          Length = 624

 Score =  153 bits (387), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 59/332 (17%), Positives = 116/332 (34%), Gaps = 43/332 (12%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
              +  +   L+R ++    +V   S        V +     ++ + +            
Sbjct: 210 TITVPGIASVLKRVVSGVQTQVTSAS-----SKEVTSSDKPVKSNKTASVH-------GG 257

Query: 177 ANSSSKKVMNLLNIAGED----------------QVTLKV--TIAEVRRDILKQIGFQHS 218
           A   ++  +N + +                    Q  ++V  +I ++  + L Q+G    
Sbjct: 258 ATVEAEPGLNAIIVRDTQARLPLYRKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWR 317

Query: 219 I---TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
                G++         D     V+ G   + K +LD  +       +  LE   + + +
Sbjct: 318 AGVSVGNNRIVDIKTTGDVNSGDVTLGSGQNFKSLLDSTNLNYLLAQIRLLESKGSAQVV 377

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----R 327
           + PTL       A   +      K V   T A  +    YG +L   P ++         
Sbjct: 378 SRPTLLTQENVEAVLNNSSTFYVKLVGKETAA--LEEVTYGTLLRIVPRIVGDRFAARPE 435

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L +  E    +      D+PS R  +  T   +  G ++++ G+ +D++      +PL
Sbjct: 436 INLSLHLEDGAKIADGGVDDLPSVRKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPL 495

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  IP LGALFR++   +  T       P +V
Sbjct: 496 LGDIPYLGALFRSNTNTKRRTVRMFILEPRIV 527


>gi|89902101|ref|YP_524572.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89346838|gb|ABD71041.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 614

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 65/384 (16%), Positives = 119/384 (30%), Gaps = 64/384 (16%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            +      +V  G  R++  S +A  ++   +    R         K +    IA E QV
Sbjct: 238 ELTEAVKGLVGAGPGRSVVISPQAGIMAVHAMPDELRQV------DKFLKAAQIAVERQV 291

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------------- 240
            L+  I EV      Q G   S   +  G + +     G    +                
Sbjct: 292 MLEAKIVEVELRDGYQSGIDWSALKNGGGSTGAMGVIGGNTSATTSSNTLVRGVQSNLPG 351

Query: 241 ---------------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                            G            F+ VL  LE    ++ L+ P +  ++ Q A
Sbjct: 352 FSAGSALLADGISLPAAGAGLFGLAFATDGFQAVLGFLETQGDVQILSSPRIATLNNQKA 411

Query: 286 SFTSGGQHLYKTVSS---------------STGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
               G +  + T  S               +  + ++T    G+ L  TP +    +I L
Sbjct: 412 VLKVGAEDFFVTNVSGGTTSSVTTGSTATLTMPSITLTPFFSGISLDVTPQIDEGTKIML 471

Query: 331 RIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   V+              G     + S  + + DT V +  G  + + GL++ +  +
Sbjct: 472 HVHPSVTTVSERAKQIDLGSAGNYVLPLASSSMNETDTLVRIQDGNIVAIGGLMQIESNR 531

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
              G+P  S +P+   LF N      + E+ +   P +++    +D            D 
Sbjct: 532 KSSGLPGTSDVPLFSTLFGNHANTGRKKEVVVLIKPTIIR--TAQDWEAQTRRTRAALDD 589

Query: 441 KAFFFNRVNKIYGPKEASEVEGQN 464
                 RV +I G  +        
Sbjct: 590 IDSVRARVIRIDGTVQEGAPRTPA 613


>gi|152993261|ref|YP_001358982.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
 gi|151425122|dbj|BAF72625.1| general secretory pathway protein D [Sulfurovum sp. NBC37-1]
          Length = 536

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 111/310 (35%), Gaps = 55/310 (17%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            GMV     +++   ++                  + +N+L+   + QV + V I  V+ 
Sbjct: 227 AGMVTVTGTARQINRVA------------------RYINVLSRQIKTQVLIDVRILAVKF 268

Query: 208 DILKQIGFQHSITGSSSGPSK------------------SFAADFGGKFVSEGGDFSVKG 249
           D  +  G   S        +                   +   D      ++  + S+  
Sbjct: 269 DDSRTTGVDWSQLYGLQNFAVDSLIMAQKNVASYTFDKLNGIQDTAFGPDTQPRNGSLVQ 328

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK----------TVS 299
           +  + +   V+  L     ++ ++ P +  ++ Q A  + G +  YK            +
Sbjct: 329 LTGKANINEVVKFLATQGDVKAISSPRVMTLNNQPAMISVGKELFYKLKSTSALGTGNNA 388

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPS 350
           ++    SV +   G++L  TP + + G I L+I   +SE           +  +    P 
Sbjct: 389 NTAQGESVDSVFAGILLDITPEIGNNGIITLKINPSISETIEDIQTQKNTVTGSRDMPPD 448

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R+  + V++  G   +L GL+          IPLL  IP+L   F++        E+
Sbjct: 449 LIRRQIASVVKVKDGEHAILGGLITSSTGTKVNKIPLLGDIPLLEYAFKHEEKINRVEEL 508

Query: 411 FIAATPFLVK 420
            +  TP +VK
Sbjct: 509 VLIITPHIVK 518


>gi|332750364|gb|EGJ80775.1| transport protein hofQ domain protein [Shigella flexneri 4343-70]
          Length = 170

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 54/166 (32%), Positives = 82/166 (49%), Gaps = 2/166 (1%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
            +  L ALE+   +  +A P L A   Q AS     +  Y+  S  +GATSV   +  + 
Sbjct: 2   LDLELSALEQKQQLDIIASPRLLASHLQPASIKQESEIPYQVSSGESGATSVEFKEAVLG 61

Query: 316 LHFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           +  TPTVL  GRI L+  I   V   V+    G++ +   ++ +T VE+ SG T+ L G+
Sbjct: 62  MEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGI 121

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                +  ++ +PLL  IP  G LFR+     E  E+ +  TP LV
Sbjct: 122 FTRKNKSGQDSVPLLGDIPWFGQLFRHDGKEDERRELVVFITPRLV 167


>gi|167041767|gb|ABZ06510.1| putative bacterial type II and III secretion system protein
           [uncultured marine microorganism HF4000_010L19]
          Length = 536

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 63/389 (16%), Positives = 133/389 (34%), Gaps = 42/389 (10%)

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
             IL +     D+ V++       VHSP  +          +         ++L   I +
Sbjct: 164 QTILDMRTLGADIDVANGII---RVHSPEKL---------TSQEEFKSARAEVLKKKIQL 211

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E+ +  +   + R    S  + +   + + +                 E          +
Sbjct: 212 EQSVEPILAEIFRLYYVSPTQAKQTLEDLFVTQGAEGASTLSNIKITVEDTTRSIIVRGH 271

Query: 177 ANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG----SSSGPSKSF 230
                    V+  ++I  + QV ++  I E   D  K++G + +            + S 
Sbjct: 272 KPDLDVIDAVLREIDIKTK-QVLIEAFIVEATSDFQKRLGSRIAAMQKQVRGDDVVTISG 330

Query: 231 AADFGGKFVS--------------------EGGDFSVKGVLDRFSFETVLHALERATAIR 270
               G    S                          +   L   + +  + AL+      
Sbjct: 331 ITGGGNAATSAADVALGAAAGTLAANAITGGTSGIGILKQLGARALKLEIEALQSLGISN 390

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            ++ P++  ++ Q A  T G +       ++ G T+    +  + L  TP+V+  G I L
Sbjct: 391 IISSPSVFTLNNQEAKITQGTE--IAYQVTADGTTTTEFKEAALSLVVTPSVIGDGNILL 448

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            IQ   ++    V   D P+ +  +  T + +  G  +V+ G+  +     K   P +SK
Sbjct: 449 DIQVN-NDSPTTVAGSDEPAIKTNEIKTKLLVSDGDIVVIGGIKINTATDTKTATPGMSK 507

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P++G LF+    + +  E+ I   P ++
Sbjct: 508 LPVVGNLFKGKAVSDKMDELLIFIAPRVI 536


>gi|154147986|ref|YP_001406614.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
 gi|153803995|gb|ABS51002.1| type II and III secretion system protein [Campylobacter hominis
           ATCC BAA-381]
          Length = 541

 Score =  153 bits (386), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 58/350 (16%), Positives = 120/350 (34%), Gaps = 70/350 (20%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           +++ +G  + +  +    + +   L      +   +     +N +    E QV+L V+I 
Sbjct: 176 SILNNGTEKYVAIAPIINQNAG--LVTVTGMKSQIARVDAYINKMKKRLERQVSLDVSIV 233

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------------------- 238
            V        G   S          +        +                         
Sbjct: 234 AVELSNSYTTGIDWSKFQLGFNTYLNGDPSTPTSYSFGNRNKVGQVTSLPQIEDIKDKDG 293

Query: 239 ------------------------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                                    S+       G    F+ + +++ LE     + ++ 
Sbjct: 294 KILFSRPTSLGTWDYKEKSMGSVKASDSNGVWAIGANLNFNIDGMINFLETKGKTKIISS 353

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDY----GVVLHFTPTVL 323
           P +T ++ Q A  + G    Y+   ++T       G TSVT  +Y    G++L+  P + 
Sbjct: 354 PKVTTMNNQPAIISVGDVINYRIQENTTSGGQTDAGTTSVTYTNYSTFIGILLNILPEIS 413

Query: 324 SPGRIGLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
              RI LR+   +S+            ++    P    +K  + V +  G T++L GL+ 
Sbjct: 414 DDNRIMLRVNPSLSDFKYQADREATAQLDRVMAPDTIQKKISSVVWVDDGDTVILGGLIG 473

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            +  +  + +P LS IP++G LF+++      TE+    TP ++     +
Sbjct: 474 QNKGKDNKNVPFLSDIPLIGNLFKSTADRLTTTELVFVITPRIIDNTDTK 523


>gi|312879791|ref|ZP_07739591.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
 gi|310783082|gb|EFQ23480.1| general secretion pathway protein D [Aminomonas paucivorans DSM
           12260]
          Length = 648

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 67/313 (21%), Positives = 118/313 (37%), Gaps = 36/313 (11%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  ++ ++V+  L+I    QV L+  +AEV    L Q G   +  G        FA
Sbjct: 333 SAPPEQYAAIERVLEQLDIQ-PKQVLLRGLVAEVNLTKLDQAGVDWAAWGGGLTGDGVFA 391

Query: 232 ADFGGKFVS----------------------EGGDFSVKGVLDRFSFETVLHALERATAI 269
                   S                       G   +      +      +  L R  AI
Sbjct: 392 GQVQMGNSSIPPMFLEWFRDLTKHDTVTYDRFGNAITTTVYDSKALVYGYVKLLNRFDAI 451

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------VTTHDYGVVLHFTPTVL 323
             L+ P +       +S   G          S               D G++L  TP + 
Sbjct: 452 NVLSMPRIMCTDNLESSLQVGQVIPQLKGKLSEVNNPSAVQSSYEYKDTGLILKVTPHIR 511

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           S   + L I+  + E V+  +  D P+   R+  T V + +G TI+L G++K+  + +K 
Sbjct: 512 SGNLVALEIEQRIEE-VLTASTVDTPTTTKREIKTNVLVENGQTIILGGIIKEAEKSMKS 570

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV----KPVAMRDLSRPDDHYSVEDD 439
            +P LS IP+LG LF ++   RE+ ++ I  TP+++    + V +       D      +
Sbjct: 571 RVPGLSYIPLLGNLFTSTVKQREKVDLMIFLTPYILENPRQAVDVSVQISSGDQVPSAAE 630

Query: 440 AKAFFFNRVNKIY 452
           A+     R++K++
Sbjct: 631 AETTL--RLDKLF 641


>gi|187250988|ref|YP_001875470.1| type II secretion system [rpteom [Elusimicrobium minutum Pei191]
 gi|186971148|gb|ACC98133.1| Putatively involved in type II secretion system [Elusimicrobium
           minutum Pei191]
          Length = 527

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 64/281 (22%), Positives = 99/281 (35%), Gaps = 44/281 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L+I    QV ++  I EV +    +IG  +  T  +       A      +V  
Sbjct: 246 ENILAELDIK-PPQVLIEAQIIEVNKSSGLEIGLSYGGTDGTIFKFTGPARGVDIDYVKG 304

Query: 242 GGDFSVKGVL-----------------------------------DRFSFETVLHALERA 266
            G      +                                    D  SF  VL +L   
Sbjct: 305 NGVSGWGYIFPPAGTGTGGSSGGDSGGGSTDGSGGNSNSPKDAFLDFSSFSIVLKSLLTR 364

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQH---LYKTVSSSTGATSV-----TTHDYGVVLHF 318
              + L +P +  I+ Q A   S           +S +TG+T+V          G+ L  
Sbjct: 365 GEAKYLGKPKVVTINNQPAVIESTRDAAVGFASNLSGNTGSTNVVSQTAERKTVGLTLKV 424

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TP V   G I L I+   S       +        R A T V + +G T+VL GLL    
Sbjct: 425 TPQVNKEGYITLLIEPSYSSVANSAVSDGTKDTLNRSASTLVRVKNGQTVVLGGLLSSRE 484

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +PLL  IP++G LF      +E T++ I  TP ++
Sbjct: 485 ILEDRKVPLLGDIPLIGWLFTQRSTTKETTDMVIFVTPTIL 525


>gi|102227325|gb|ABF70182.1| AscC [Aeromonas hydrophila]
          Length = 614

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 100/314 (31%), Gaps = 19/314 (6%)

Query: 116 IERDIAHLEMTLRRFIADSNIRV---EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
            + +   +   L R ++D+ +++   E    +    G      D      L      +  
Sbjct: 212 TDVEAPGVATILSRLLSDAGVQMVNGEGTKGSTSHSGQAIVQADPSLNAVLVRDAPERMA 271

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                 ++  K    + +A          I ++  + L Q+G    +   +    +    
Sbjct: 272 MYGKLIAALDKPSARIEVALS--------IIDINAEDLSQLGVDWRVGIRTGSNQQVIIK 323

Query: 233 DFGG--KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
             G            S+            ++ LE     + ++ PTL       A     
Sbjct: 324 TTGDRKGIEGGAALGSLVDSKGLDYLLARVNLLENQGNAQVVSRPTLLTQENTQAVIDHS 383

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-G 346
             +  K   S      +    YG +L  TP V+  G    + L +  E        +   
Sbjct: 384 ETYYVKI--SGERVAELKGITYGTMLRMTPRVIQLGDRPEVSLSLHIEDGNQKPNSSGLD 441

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+      DT   +  G ++++ G+ +D++ +    +P L  IP LGALFR+      
Sbjct: 442 GIPTISRTVVDTIARVGHGQSLLIGGIYRDELSESLSKVPFLGDIPYLGALFRSKESQTR 501

Query: 407 ETEIFIAATPFLVK 420
                    P L+ 
Sbjct: 502 RQVRLFIIEPRLID 515


>gi|115351491|ref|YP_773330.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
 gi|115281479|gb|ABI86996.1| type II and III secretion system protein [Burkholderia ambifaria
           AMMD]
          Length = 812

 Score =  153 bits (386), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 133/349 (38%), Gaps = 35/349 (10%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V    T+ ++     +A      +  +  +    L   D   +   LR+ I   ++ V+
Sbjct: 240 KVLDRHTLLVYPSQPEKA-----RNYTEFAIRTFFLSHADAKSVMAALRQMIKPKDVYVD 294

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + VV+     TIQ +                        ++V+  L+I   + VTL 
Sbjct: 295 ERVNAVVMRDTPETIQVA------------------------ERVVMGLDIPQSE-VTLD 329

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V + EV  +    +G Q+      +              +       V    +       
Sbjct: 330 VQVLEVNMNDSLDLGVQYPGKIQFNALGGVEGGALTLGDLLRLNRDRVGVSSESGGLALA 389

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLH 317
           +  L++    +TLA P +   + + A+   G +    T +++ G    SV+  D G++L 
Sbjct: 390 IDLLQKQGKTKTLANPKIRVRNMEKANIKIGERVPIVTTTNANGVVTESVSYQDVGLMLK 449

Query: 318 FTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
             P +     + +++  EVS               S   R A+T +   +G T +LAGL+
Sbjct: 450 VEPRISLNEEVSVKVNMEVSSILTKETTKTGLVAYSLGTRNAETLMTAKNGETQILAGLV 509

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           K +      G+P +S +P+LG LF ++  + E +EI +  TP + + + 
Sbjct: 510 KRNESDSVAGLPGVSGLPVLGRLFGSNGRSNERSEIVLLITPHIERNLD 558


>gi|163883892|gb|ABY48121.1| RcpA [Yersinia ruckeri]
          Length = 304

 Score =  152 bits (385), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 124/295 (42%), Gaps = 25/295 (8%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
             + + +   +  I+ V  ++  +  S    AD  +    ++ ++ K  G A   L    
Sbjct: 31  HAEALYLATGESHIINVKDEIDTIFSSATKVADYELIGTNSIIIYAKEEGLAEFNLFDKK 90

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            K +  + + +++ I+  +  +R    DS I +  + +  +L G  +T +  +   ++  
Sbjct: 91  NKPIHKVAVFVDKIISKAKKRIRIEYPDSQININKLGEGYILTGTAQTEEARETIEKIVA 150

Query: 166 TFLSQ----SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             +        +  Y   S   + N + I   +QV +K+TIAEV +D    IG   S  G
Sbjct: 151 NAIGSVPVRQEKWGYTIHSHSNITNKITIPVTNQVNVKLTIAEVTKDFTDNIGLDWSTIG 210

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + SG       + G                      T++ A+   +  R LAEP L+ +S
Sbjct: 211 NVSGSFHFTQFNAG-------------------KISTLVQAINDESVARVLAEPNLSVLS 251

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           G++ASF  GG+    + + +T   +V+  ++G+ L+    V    RI +++  EV
Sbjct: 252 GETASFLVGGELPIVSTTQNT--INVSYKEFGIKLNIGAKVSESKRIRVKLDEEV 304


>gi|262363857|gb|ACY60577.1| outer membrane secretin precursor [Yersinia pestis D106004]
          Length = 470

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 20/324 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
           E     +   L+R ++D+ I+   V +  +        Q + RA   ++     S     
Sbjct: 68  EVAAPGVATILQRVLSDATIQQVTVDNQRI-------PQAATRASAQAKVEADPSLNAII 120

Query: 177 ANSSSKKVM---NLLNIAGEDQVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              S +++     L++   +    ++V  +I ++  D L ++G    +   +    +   
Sbjct: 121 VRDSPERMPMYQRLIHALDKPSARIEVALSIVDINADQLTELGVDWRVGIRTGNNHQVVI 180

Query: 232 ADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
              G      S G   S+            ++ LE   + + ++ PTL       A    
Sbjct: 181 KTTGDQSNIASNGALGSLIDARGLDYLLARVNLLENEGSAQVVSRPTLLTQENAQAVIDH 240

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNA 345
              +  K          +    YG +L  TP VL+ G    I L +  E  ++       
Sbjct: 241 HETYYVKVT--GKEVAELKGITYGTMLRMTPRVLTQGDKSEISLNLHIEDGNQKPNSSGI 298

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P+      DT   +  G ++++ G+ +D++      +PLL  IP LGALFR      
Sbjct: 299 DGIPTISRTVVDTVARVGHGQSLIIGGIYRDELSVALSKVPLLGDIPYLGALFRRKSELT 358

Query: 406 EETEIFIAATPFLVKPVAMRDLSR 429
             T       P ++       L+ 
Sbjct: 359 RRTVRLFIIEPRIIDEGIAHHLAL 382


>gi|253996576|ref|YP_003048640.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
 gi|253983255|gb|ACT48113.1| type II and III secretion system protein [Methylotenera mobilis
           JLW8]
          Length = 583

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 112/322 (34%), Gaps = 49/322 (15%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L+G+V      +  V L    +          +  +  +NL+ ++ E QV L+  I  V+
Sbjct: 234 LNGIVGNENGRRVIVNLQSGVIVVRAMPNEIRNV-ESFLNLMQVSIERQVILEAKILNVQ 292

Query: 207 RDILKQIGFQHSITGSSSGPSK--------------------------SFAADFGGKFVS 240
            +   Q G   S+ G S   +                           S          +
Sbjct: 293 LNDQSQSGVNWSVFGRSGSNTGIVGNINANTRLSSSGNGNLVSGDLTASTGTVLSNAATT 352

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             G       L   +F T+L  LE    ++ L+ P +++I+ Q A    G    + T  S
Sbjct: 353 ALGGPLFAIALQGANFSTLLSFLETQGDVQVLSSPRISSINNQKAVLKVGTDEFFVTGIS 412

Query: 301 STGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
           S    SV                G+ L  TP +     I L +   +S+           
Sbjct: 413 SNTTASVGATTTVPEVILQPFFSGITLDVTPQIDKDDNIILHMHPSISQVSTVNKQVTLG 472

Query: 342 -GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                 ++P  S  + + D+ V    G  IV+ GL+ +     K  +P L  +  +GA F
Sbjct: 473 GTAGQINLPLASSNISETDSIVRTRDGRVIVIGGLMTESASSTKSKVPGLGDVKGVGAAF 532

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R    ++ +TE+ I     +V+
Sbjct: 533 RQQSASKTKTELVILLKASVVQ 554


>gi|74316782|ref|YP_314522.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
 gi|74056277|gb|AAZ96717.1| general secretion pathway protein D [Thiobacillus denitrificans
           ATCC 25259]
          Length = 554

 Score =  152 bits (385), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 40/289 (13%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-------------- 217
                     ++ +    +A E QV L+  I EVR     Q G                 
Sbjct: 240 KTPPRTMREVERFLKATALAVERQVMLEAKIIEVRLSDGFQTGINWAALHEGRHKYSSGA 299

Query: 218 -----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                ++   ++  S       G    S              SF  +++ LE   A+  L
Sbjct: 300 DAGNFNLVTGAASGSLGSVLGSGLPAASGTSGGIFGLAFQTKSFAALINFLETQGAVHVL 359

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVTTHDYGVVLHFTPT 321
           + P + A++ Q A    G    + T  S+T            + ++     G+ L  TP 
Sbjct: 360 SSPRIAALNNQKAVLKVGTDDFFVTNVSTTSNTGGAGTTTTPSVTLQPFFSGIALDVTPQ 419

Query: 322 VLSPGRIGLRIQTEVSEPV--------IGVNAGDMPSYR--VRKADTTVELPSGGTIVLA 371
           +   GRI L ++  VS               +  +P     V + D+ V++  G  + + 
Sbjct: 420 IDERGRITLHVRPSVSVVTEKIKNIDAGAAGSLTLPLASSAVSETDSVVQVEDGRIVAIG 479

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G++K         +P + ++P+LG  F N+  +  ++E+ I   P ++ 
Sbjct: 480 GMMKQSFDDSANRVPAIGRVPLLGYFFGNTARSASKSELVILIKPTVID 528


>gi|309389153|gb|ADO77033.1| type II and III secretion system protein [Halanaerobium praevalens
           DSM 2228]
          Length = 438

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 56/239 (23%), Positives = 100/239 (41%), Gaps = 19/239 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ +K  + E+ R  +K++G   S              +  G                +
Sbjct: 175 KQIMIKARVEEISRTEIKELGINPSQLTELK-----IIKNEAGDLEEL-----------K 218

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHD 311
            ++   L +L        LA P+L  +  + A    G Q   K     +  T  ++   +
Sbjct: 219 PNWPDTLRSLNERGLSNILANPSLMTLDRKKAKLIIGDQIPVKLERVESEKTVSTINYIE 278

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            G+VL F P +++   + L I+  V+     V A  +P+   R A+TTV L +  T+ + 
Sbjct: 279 AGIVLEFLPKIINEKEVLLEIKPSVNSL-GQVLADGLPAVNSRSAETTVILENDQTLAIG 337

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           GL+K D  +  + +P+L+ +P+LG LF     N  ETE+ I  TP +++         P
Sbjct: 338 GLIKKDELKSIKEVPILADLPLLGKLFSAEEKNDIETELIIFITPKIIESKTEIKTKTP 396


>gi|303248632|ref|ZP_07334887.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489982|gb|EFL49906.1| type II and III secretion system protein [Desulfovibrio
           fructosovorans JJ]
          Length = 629

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 47/223 (21%), Positives = 89/223 (39%), Gaps = 2/223 (0%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +  G +     +      G   +  G   + G +     E  L AL     ++ LA
Sbjct: 395 GSSGNGFGLNYPALTNSLTTASGLGAAGAGVNFLFGKIGENVLEAQLTALAEDNKVKILA 454

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            PT+T +  Q+A   +G    Y + S +   T+V   +  + L   P V+    + ++I 
Sbjct: 455 SPTITTMENQTAFVENGMDVPYTSTSQNG--TNVQFANATLRLEILPHVVDGTNLRMKIT 512

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +  +          P    R+  + + +    TIV++GL++D +     G+P L  IP 
Sbjct: 513 VKDDQVDTSRTVDGNPYIYKRETQSNLVVEDRETIVISGLVRDTVSDGNSGVPFLRDIPG 572

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           LG  F++   + E  ++ I  TP ++K   +  +    D    
Sbjct: 573 LGWAFKSKNSSVEREQMLIFITPIILKEKPIAPVPPVADRVDP 615


>gi|171059300|ref|YP_001791649.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170776745|gb|ACB34884.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 662

 Score =  152 bits (385), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 67/434 (15%), Positives = 152/434 (35%), Gaps = 63/434 (14%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           +   +  K P   +   A + +    + +   I+I L++ +   +      + V + +  
Sbjct: 180 AGLEAAFKRPVTLQFRDANVKMVFEALSRTANINIILDRDVRADLR---TTIYVQNASVE 236

Query: 78  DVV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           D +            V +  T++++     +          +  +    L   + A +  
Sbjct: 237 DTLDLILLQNQLDRRVLNGNTIFVYPATPAK-----QREYNELKVRTFQLSNIEAAQMAT 291

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            ++  +   ++  +  S+++V+     +I  +++   ++   +                 
Sbjct: 292 IIKTMLKTRDVVTDAKSNSLVMRDTAASIAVAEKL--IAANDVPDPEVVLEVQVLEV--- 346

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
                                 D L  IG +     +   PS +          S+    
Sbjct: 347 --------------------SSDRLSNIGLRFPDAFTVGTPSTATTVGDLRALTSDNLTA 386

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ--------HLYKT 297
           S   +              + T    LA P + A + + A    G +           ++
Sbjct: 387 SSLSLGLNLL--------LQDTDTNILASPRIRARNKEKARILVGDKVPVITNLITPQQS 438

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRK 355
             SS    S+   D G+ L   P V + G +G+++  EVS     I  ++G       R 
Sbjct: 439 GQSSVITGSIQYVDVGIKLEVEPQVYADGDVGIKVNLEVSNIAKTITTSSGVAYQIGTRN 498

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A T + L  G T ++AGL+ D  +     +P L ++P++G LF ++  +  ++EI ++ T
Sbjct: 499 ATTALRLHDGETQMMAGLINDQDRSTASKLPGLGQLPVIGRLFTSTNASGGKSEIVLSIT 558

Query: 416 PFLVKPVAMRDLSR 429
           P +V+P +  +   
Sbjct: 559 PRIVRPQSTPEARL 572


>gi|90416464|ref|ZP_01224395.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
 gi|90331663|gb|EAS46891.1| type 4 fimbrial biogenesis protein PilQ [marine gamma
           proteobacterium HTCC2207]
          Length = 754

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 120/330 (36%), Gaps = 60/330 (18%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQ--SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            G   T   S+R   + +   +       +   ++ K++++ +++  + QV ++  I   
Sbjct: 422 EGNATTTILSERGSAIVDERTNTIILTDTEDKINAFKRLIDEIDVPIK-QVLIEARIVIA 480

Query: 206 RRDILKQI-------GFQHSITGSSSGPSKSFAADFGG---------------------- 236
             D  K++       G +    G+   P       F G                      
Sbjct: 481 NTDFKKELGVTWGLAGIEKLTGGTIGSPFGDKTLGFSGRRSGLTPGAGVKETFTYSADEI 540

Query: 237 --------------------------KFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                                        +  G FS+  + D F  +  L ALE      
Sbjct: 541 ETDDDGITTYTRNYDIGLGDSLAVDLGVDNPTGSFSLGYLTDNFLIDLELSALESDGFGE 600

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGL 330
            +++P +     Q A   SG +  Y+  +SS GATS+   +  + L  TP +    RI +
Sbjct: 601 IVSQPKVLTGDKQQAVIKSGTEIAYQKATSS-GATSIEFKEAVLQLEVTPQITPDNRIIM 659

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +     + V        PS  + + +T   + +G T+VL G+ + +     + +PLL  
Sbjct: 660 DLLVS-QDSVGAFTPTGEPSIDITQIETQALVGNGQTLVLEGIFQTEEVNGTDKVPLLGD 718

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P LG LFRN   N E+ EI    TP ++ 
Sbjct: 719 LPFLGKLFRNDLRNIEKREILSFITPKIID 748


>gi|153947838|ref|YP_001402784.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis IP 31758]
 gi|170026130|ref|YP_001722635.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis YPIII]
 gi|186893670|ref|YP_001870782.1| YscC/HrcC family type III secretion outer membrane protein
           [Yersinia pseudotuberculosis PB1/+]
 gi|152959333|gb|ABS46794.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752664|gb|ACA70182.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis YPIII]
 gi|186696696|gb|ACC87325.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pseudotuberculosis PB1/+]
          Length = 505

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++  +   + L+        +      S+    N + I      
Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +     F
Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                +     + D  +F   L+AL++ +  R L++P++  ++   A          K  
Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
                   + +   G +L  TP ++   G   + +   + +     +      +P  R  
Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496

Query: 415 T 415
            
Sbjct: 497 K 497


>gi|253987556|ref|YP_003038912.1| hypothetical protein PAU_00073 [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253779006|emb|CAQ82166.1| conserved hypothetical protein [Photorhabdus asymbiotica]
          Length = 344

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/232 (22%), Positives = 89/232 (38%), Gaps = 7/232 (3%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---DFSVKGV 250
            QV +   I    R+ L ++G    I       + +          +             
Sbjct: 114 QQVQITAHIVTSSREALHELGIYWGIPIGEQLNTSTGINRLNINQAANDNMHRFALNIAR 173

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +     E  L ALE+   +  +A P LTA   Q AS   G       VS     ++V   
Sbjct: 174 IHTSLLELELSALEQENLLDIIASPRLTASHQQLASIKQGSDIP--YVSQEKEKSTVQFK 231

Query: 311 DYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L   +I   L+I   +    I    G+  +   ++  T V + +G T+
Sbjct: 232 EAVLGMEVTPHILRKDKIRLSLKISQNMPGISISQGGGENLTIDKQEIMTQVTVKNGETL 291

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L G+ +    +  + IP LS IP+LG+LF          E+ I  TP L+ 
Sbjct: 292 ILGGIFQQKKGEKTQKIPYLSDIPLLGSLFDQKGHKHSRRELIIFITPQLMD 343


>gi|120602835|ref|YP_967235.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
 gi|120563064|gb|ABM28808.1| type II and III secretion system protein [Desulfovibrio vulgaris
           DP4]
          Length = 524

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155
           V+ +     ++    +  +R    L+      +  S I V       +   L G +   +
Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213
            ++    +     + S   Q       K++ L+N       Q+ LK  I E  RD  + +
Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271

Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247
           G Q    G S                                   G    +G   +    
Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331

Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                         G +     E  L AL+    +  L+ P+++ +  Q A FT  G+ +
Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
               +++ G   V   D  + L  TP V+    + L++Q +  E  +       P    +
Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +TT+ +  G T+V++GL K+     ++G+P L  +  +GALF N     +  ++ I  
Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSSRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510

Query: 415 TPFLV 419
           TP ++
Sbjct: 511 TPAIL 515


>gi|83645990|ref|YP_434425.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
 gi|83634033|gb|ABC30000.1| putative type III secretion protein YscC [Hahella chejuensis KCTC
           2396]
          Length = 573

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 90/238 (37%), Gaps = 14/238 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK--------FVSEGGD 244
             QV ++V+I +V  D L ++GF+  I G +   + +  +              V +G +
Sbjct: 309 RSQVEIEVSIIDVSTDRLNEMGFEWRINGRNGSFTNADFSQGALPRSPNELSFVVGDGAN 368

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           FS      +  F + + AL        L++PT+  +    A          + V      
Sbjct: 369 FSTLLTNTQDLFLSRIRALSEDGDASVLSQPTILTLDNIEAVLDHSTTFFVRLV--GDRE 426

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             +     G V+  TP ++      +I L I  E      G    D+P+       T   
Sbjct: 427 VDLFPVSVGSVVRVTPHIVKGDLSDKIHLNINIE-DGQQTGQAVDDIPAVSKSIITTEAL 485

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +   G++++ G   +     +  IP+L  IP+LG LFR      ++       +P +V
Sbjct: 486 VNDNGSLLVGGYYFNQDSTNRSKIPVLGDIPLLGRLFRTDGSQLQKRARLFLISPRIV 543


>gi|108810017|ref|YP_653933.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|108813572|ref|YP_649339.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|145600961|ref|YP_001165037.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165936434|ref|ZP_02225002.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010446|ref|ZP_02231344.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166213955|ref|ZP_02239990.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167419179|ref|ZP_02310932.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167426134|ref|ZP_02317887.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|167469427|ref|ZP_02334131.1| possible type III secretion protein [Yersinia pestis FV-1]
 gi|270488950|ref|ZP_06206024.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
 gi|108777220|gb|ABG19739.1| type III secretion protein [Yersinia pestis Nepal516]
 gi|108781930|gb|ABG15988.1| type III secretion protein [Yersinia pestis Antiqua]
 gi|145212657|gb|ABP42064.1| type III secretion protein [Yersinia pestis Pestoides F]
 gi|165915550|gb|EDR34159.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165990536|gb|EDR42837.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166204930|gb|EDR49410.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166963173|gb|EDR59194.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167054845|gb|EDR64647.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|270337454|gb|EFA48231.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           pestis KIM D27]
          Length = 505

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++  +   + L+        +      S+    N + I      
Sbjct: 203 QYRDQNVRLPGLVSVLRELNQGNNLPLAGGNQPDGNQASSPVFSADPRQNAVIIRDRQAN 262

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +     F
Sbjct: 263 MPIYRSLITQLDQRPIQIEISVTIIDVDAGDISQLGVDWSASASIGGTGVSFNST----F 318

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                +     + D  +F   L+AL++ +  R L++P++  ++   A          K  
Sbjct: 319 AKNNAEGFSTVIGDTGNFMVRLNALQKNSRARILSQPSVVTLNNIQAVLDKNVTFYTKL- 377

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVR 354
                   + +   G +L  TP ++   G   + +   + +     +      +P  R  
Sbjct: 378 -QGEKVAKLESVTSGSLLRVTPRMIETEGVQEVLLNLNIQDGQQQASTNSNEPLPEIRNS 436

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 437 DISTQATLQVGQSLLLGGFIQDTQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 496

Query: 415 T 415
            
Sbjct: 497 K 497


>gi|46579684|ref|YP_010492.1| type II/III secretion system protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46449099|gb|AAS95751.1| bacterial type II/III secretion system protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311233480|gb|ADP86334.1| type II and III secretion system protein [Desulfovibrio vulgaris
           RCH1]
          Length = 524

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 68/365 (18%), Positives = 130/365 (35%), Gaps = 45/365 (12%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV---LHGMVRTIQ 155
           V+ +     ++    +  +R    L+      +  S I V       +   L G +   +
Sbjct: 152 VMTLADKKAEVERELLETQRMAQQLKGRKVGPLVTSVIEVRYAEAAELKKNLEGFLSKDE 211

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI 213
            ++    +     + S   Q       K++ L+N       Q+ LK  I E  RD  + +
Sbjct: 212 QNKPVGAVVVDTHTNSLIVQAVEDDLSKIITLVNNLDKPRAQILLKAHIVEATRDTARDL 271

Query: 214 GFQHSITGSSSG-----------------------PSKSFAADFGGKFVSEGGDFSV--- 247
           G Q    G S                                   G    +G   +    
Sbjct: 272 GIQWGGVGRSGNMGDGNRMWVTPGGSGPTKPTDPQAGGGVPVIPPGGLSGQGFGMNFPVN 331

Query: 248 -------------KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                         G +     E  L AL+    +  L+ P+++ +  Q A FT  G+ +
Sbjct: 332 KAGKTAMGSLGLMFGTIGGNMLEVQLSALQDNGKLNILSSPSISTLDNQMA-FTENGEKV 390

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
               +++ G   V   D  + L  TP V+    + L++Q +  E  +       P    +
Sbjct: 391 PYVSTNAQGDREVKFEDAVLRLEITPHVIDESNLKLKVQVKKDEVDLTRTVEGNPFIIKK 450

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           + +TT+ +  G T+V++GL K+     ++G+P L  +  +GALF N     +  ++ I  
Sbjct: 451 QTETTLIVQDGETVVISGLTKERSSTRRQGLPYLQDVEGIGALFGNDSKANKLEDVLIFI 510

Query: 415 TPFLV 419
           TP ++
Sbjct: 511 TPAIL 515


>gi|254445969|ref|ZP_05059445.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198260277|gb|EDY84585.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 736

 Score =  152 bits (384), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/449 (17%), Positives = 154/449 (34%), Gaps = 33/449 (7%)

Query: 51  SIGLNKVIILQVP---VDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106
           ++   + II ++         + V     AD   V S  + ++ GK     N        
Sbjct: 291 NLEFFEGIIQKLDIKADPSTRIEVIPLKHADATEVASLLSQFVSGKTKNDTN----DRTN 346

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
                         A           D+ +R  + +      G  R  Q S     L++ 
Sbjct: 347 SPGNTNTRSGRSGGAGSPTFGGANQNDTPVRETLGAGAGSSVGEDRDSQFSTFMTILADE 406

Query: 167 FLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ---HSITG 221
             +    +   +       ++N ++I    QV ++V IAEV  +  + +       S+T 
Sbjct: 407 RSNSLVISGTRSDLDLMTVLVNKIDILLP-QVRIEVIIAEVSLNENEGLSRGMDAFSMTY 465

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS----------FETVLHALERATAIRT 271
           +      +     G    +   +F   G+   F+             +L+     + ++ 
Sbjct: 466 AEQDDGSANITIPGPGDDAPAINFLGLGLDGSFNYNDGVISGLTLNGILNTARSNSNVQL 525

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSS-----TGATSVTTHDYGVVLHFTPTVLSPG 326
           L+ PTL     + A+          T S +     T   +V   D G+ L  TP +    
Sbjct: 526 LSVPTLVTTHNKEATIVVAEARPIVTSSQTSSISDTFRQNVQYEDIGIELTVTPLIGPND 585

Query: 327 RIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            I L I  ++ +    + ++  D P    R+A + V + +   +VL GL ++ + + +  
Sbjct: 586 VIQLEIDQKIDDISGKVTIDGNDQPIIGRRQATSYVSVANHELVVLGGLQRNRVTKGRSK 645

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDDAKA 442
           +  L +IP+LG LF        +TE+ +   P +++      +D S+  D        + 
Sbjct: 646 MSFLGEIPLLGGLFNRRSDESVKTELLVFIRPEVIRTTDDVNQDASKKIDELEAAAAIQR 705

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
           F       I    +  E   +      GF
Sbjct: 706 FLETGELDISKIGDLDEEAPKAQPKGKGF 734


>gi|207724227|ref|YP_002254624.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
 gi|206589440|emb|CAQ36401.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum MolK2]
          Length = 761

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
            AK P   +   A + +    + +   I+  L+K +   +      V +      D    
Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236

Query: 80  ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
                     + +  T+ ++     +            ++    L   +       L+  
Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +      ++  ++ VV+        +S   V L+E  +    RN        +V+ + + 
Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                              L Q+G Q+  + + +  S + A                   
Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
           +   +   VL+          LA P + A + + A    G +    T +S++    + SV
Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
              D G+ L   P++     + ++I  EVS     +   +         R A+T ++L  
Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP   
Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                    +  E +   F+          +   + +   
Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDSQAPA 591


>gi|254459101|ref|ZP_05072524.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
 gi|207084372|gb|EDZ61661.1| type II and III secretion system protein [Campylobacterales
           bacterium GD 1]
          Length = 551

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 108/326 (33%), Gaps = 31/326 (9%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
             + I  +   +      L          +  +  +  L    + QV + V +  V  + 
Sbjct: 194 TAQDIYQASAPIINKNAGLVTVTATLKQMNRLEGYLKKLQDKVQLQVLIDVQLLSVTMEE 253

Query: 210 LKQIGFQHS------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
            K  G                   S +        +          + S+  V    + +
Sbjct: 254 GKTTGVDWQQLYALQKVTLSANYLSKNNVPTFTGTEITTAGAQAVNEASLVTVKAGGTLD 313

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------------T 305
            V+  L+    + +++ P +  ++ Q A  T+G ++ YK  S +                
Sbjct: 314 EVIKFLQTQGDVVSISNPKVLTLNNQPALITAGTEYFYKIKSETNQQGTGGGVAATTQND 373

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTT 359
           +V +   GV+L  TP +     I L+I   +SE    ++          P    R+  + 
Sbjct: 374 TVQSVFAGVLLDITPEIADDKSITLKINPSLSETAQDISQESSANRVMPPDLNRRQLSSV 433

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V +  G  I+L GL+          +PLL  IP L  LF+     ++  E+ I   P ++
Sbjct: 434 VTVKDGNRIILGGLINTKNVNKSNKVPLLGDIPGLSYLFKYEEMTKQIQELVIVIEPHII 493

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFF 445
              A  +LS  +  Y    D      
Sbjct: 494 D-KANNNLSLAELGYKGITDHTVILN 518


>gi|253988518|ref|YP_003039874.1| type III secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|211637900|emb|CAR66529.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779968|emb|CAQ83129.1| type iii secretion outer membrane protein pscc [Photorhabdus
           asymbiotica]
          Length = 618

 Score =  152 bits (383), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 53/363 (14%), Positives = 121/363 (33%), Gaps = 24/363 (6%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
           +   L  +  G   + +       +++  I       +   +   L R ++D+N+     
Sbjct: 174 QQSLLRSEKTGALTIEIFPLKYASVVDRKIQYRDTNIEAPGIATVLSRLLSDANVTTVT- 232

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
            +     G   + +   +A       + +    + +  +   ++N L+      + + ++
Sbjct: 233 GEMSSSTGGNHSSRAVIQAEPSLNAIIVRDNPERMSMYTH--LINALDKPSAR-IEVALS 289

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----------GKFVSEGGDFSVKGV 250
           I ++  D L ++G    +  ++                       G+ +      S+   
Sbjct: 290 IVDINADNLSELGVDWQVGINTGPRHIIDITTSAREKEKEKNGGKGESIGSTALGSLVDR 349

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  LE   + + ++ PTL       A       +  K          + + 
Sbjct: 350 RGLDYLLAKITLLESKGSAQVVSRPTLLTQENTQAVIDHNETYYVKV--EGERVAELKSL 407

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V+  G    I L +  E        +  G +P+      DT   +  G 
Sbjct: 408 TYGTMLRMTPRVIKIGDTPEISLNLHIEDGNQKPNSSGLGGIPTINRTIVDTVARVGHGQ 467

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           ++++ G+ +D++ +    +P L  IP LG LFR +      +       P L+       
Sbjct: 468 SLLIGGIYRDEMSETVRKVPFLGDIPYLGVLFRTTTEQVRRSVRLFIIEPRLIDSGVANY 527

Query: 427 LSR 429
           L+ 
Sbjct: 528 LAL 530


>gi|124268320|ref|YP_001022324.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
 gi|124261095|gb|ABM96089.1| general secretion pathway protein D [Methylibium petroleiphilum
           PM1]
          Length = 736

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 97/291 (33%), Gaps = 41/291 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
            V++ L+     QV ++  + EV        G Q        G                 
Sbjct: 397 SVIDQLDAR-RAQVYVETMLVEVNATKAADAGIQWQGLIGKDGDKTGLIGGTNFGTGGDN 455

Query: 236 ----------------GKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLT 278
                           G   S G +  V       ++   +   LE       L+ P L 
Sbjct: 456 IINLSIAAAQGGTAVSGNLPSAGLNLGVIRRFAGVYTLGALARFLETNADGNILSTPNLV 515

Query: 279 AISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
            +  + A    G    + T S         ++    ++   D G+ L   P +   G + 
Sbjct: 516 TLDNEEAKIVVGQNVPFVTGSFTSTGTGSGATNPFQTIERRDVGITLRVKPQIGENGTVR 575

Query: 330 LRIQTEVSEPVIGVNAGDMP------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + I  E S  V    +  +           R  ++TV +  G  +V+ GL++D  Q    
Sbjct: 576 MTIYQEASSVVNQNVSQGVADATAGLVTNKRSIESTVVVNDGDILVMGGLMQDQFQDNSS 635

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
            +P L ++P +GALFR+    R ++ + +   P +++     + +   D Y
Sbjct: 636 RVPGLGRLPGIGALFRSDNRTRTKSNLMVFLRPQVMRSAESSN-ALSLDRY 685


>gi|297539729|ref|YP_003675498.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
 gi|297259076|gb|ADI30921.1| type IV pilus secretin PilQ [Methylotenera sp. 301]
          Length = 728

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 41/189 (21%), Positives = 81/189 (42%), Gaps = 3/189 (1%)

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           ++      +    +S+            L A+E     + ++ P +T  +   A   +G 
Sbjct: 537 SNLAVANATGSIAYSIFSKAAGLVLNMELTAMESDGHGKIVSSPRVTTANQHKAKIAAGT 596

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY 351
           +  Y   SSS  AT V+     + L  TP +    +I + +  +V +  +G     +PS 
Sbjct: 597 EIPYLEASSSGAAT-VSFKSAVLSLEVTPQITPDDKIIMEL--DVKKDRVGQVFSGVPSI 653

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             +  +T V + +G T VL G+ +  ++   E +P    +PI+G LF+      ++ E+ 
Sbjct: 654 ETQNINTQVLVGNGETAVLGGIFEQTVRNDVEKVPFFGDLPIMGNLFKKRTTQNDKQELL 713

Query: 412 IAATPFLVK 420
           I  TP ++ 
Sbjct: 714 IFITPRIMD 722


>gi|33596848|ref|NP_884491.1| putative type III secretion protein [Bordetella parapertussis
           12822]
 gi|33573549|emb|CAE37540.1| putative type III secretion protein [Bordetella parapertussis]
          Length = 600

 Score =  152 bits (383), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
           + ++  I +V  D++ ++G        ++           G  +   G          G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L ALE       L++P++       A          +T+       +VT  
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417

Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
             G  L  TP  +      ++ L I  E    +       +P  R     T   +    T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G      ++  E +PLL  IP LG LF +     +  E      P +V  +  + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536

Query: 428 SRPDDHYSV 436
             P    S 
Sbjct: 537 FSPVAGTSQ 545


>gi|157363362|ref|YP_001470129.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157313966|gb|ABV33065.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 1179

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 126/315 (40%), Gaps = 39/315 (12%)

Query: 112  LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS--QRAVELSETFLS 169
                +  ++  ++  +        + ++ ++D +V+ G+ + ++D   Q  +++++    
Sbjct: 895  FVYTLPHNLDRIKSLIE--FYGGKVYIDELNDLMVVTGLSKKMKDQLDQTILQIAQPL-- 950

Query: 170  QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                                     Q+ ++  +  V R ++ +I  Q+S++ S  G +  
Sbjct: 951  ------------------------KQIEIEAKL--VDRSLIDEITRQNSLSISLPGQAPE 984

Query: 230  FAADFGGKFVSEGGDFSV-----KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                     +S               L   S   V            LA P +   SG+ 
Sbjct: 985  ITVSSTSLSLSTSVINLFDYQKLFSYLSGASVTAVFELNNSNNLDNLLASPRIVTSSGKE 1044

Query: 285  ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
            A    G +  Y+    + G   V   D G+ L  TP V + G I L I T+VS+P    N
Sbjct: 1045 ARILIGDRVPYQ-TIDADGNVIVNFLDTGIELRITPYVRTDGTIELNIFTKVSKPTYYPN 1103

Query: 345  AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              D+P    R+ +T V L +G T+V+ GL+++  ++    +P L  +P +G LFR+    
Sbjct: 1104 -IDIPGESTRETETDVILKNGDTLVIGGLMRETKEETSAKMPFLGDLPFIGQLFRSKTEK 1162

Query: 405  REETEIFIAATPFLV 419
             ++ E+ I  T  ++
Sbjct: 1163 ADKRELLIFITARVI 1177


>gi|33600622|ref|NP_888182.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
 gi|33568221|emb|CAE32134.1| putative type III secretion protein [Bordetella bronchiseptica
           RB50]
          Length = 600

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
           + ++  I +V  D++ ++G        ++           G  +   G          G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAAELAPGTLGI 359

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L ALE       L++P++       A          +T+       +VT  
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417

Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
             G  L  TP  +      ++ L I  E    +       +P  R     T   +    T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G      ++  E +PLL  IP LG LF +     +  E      P +V  +  + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536

Query: 428 SRPDDHYSV 436
             P    S 
Sbjct: 537 FSPVAGTSQ 545


>gi|298527693|ref|ZP_07015097.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511345|gb|EFI35247.1| type II and III secretion system protein [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 553

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/271 (18%), Positives = 98/271 (36%), Gaps = 31/271 (11%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
            +   +  L      QV +   I EV      Q+G   S        + +++ + G +  
Sbjct: 281 VANNFIKQLKSKLSQQVVIDAQILEVSLSDSFQLGVDWSYISQELASNFAYSVNLGWQSA 340

Query: 240 SEGGDFSVKGVLDRF---------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
              G + ++                      F   + ALE    +  ++ P + +   Q 
Sbjct: 341 QGFGTYGLESEDPVPIVIDSRTGDVDEVYRQFSATIQALETFGQVSVVSNPHVRSRHLQP 400

Query: 285 ASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A  TSG    +    +             + +  T   GV+L   P +   G + L I  
Sbjct: 401 ALVTSGTTRNFIQEITRSRRATDEDWVDYSVNTGTAFEGVMLGVVPFITDNGDVDLDIFP 460

Query: 335 EVSEPVIGVNA------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             S+  +   A        +P   VR  +T V +  G T++L GL++   ++ +   P  
Sbjct: 461 ITSQVDLSETAKIGGDQITLPKVNVRNVNTKVRVNDGDTVILGGLIQKGSRERERATPGA 520

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S+IP LG LF+    +++ +E+ +     +V
Sbjct: 521 SRIPGLGWLFKQREDSQDLSELVVIMHVRVV 551


>gi|207739033|ref|YP_002257426.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
 gi|206592404|emb|CAQ59310.1| general secretion pathway gspd-related protein [Ralstonia
           solanacearum IPO1609]
          Length = 761

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
            AK P   +   A + +    + +   I+  L+K +   +      V +      D    
Sbjct: 180 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 236

Query: 80  ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
                     + +  T+ ++     +            ++    L   +       L+  
Sbjct: 237 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 291

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +      ++  ++ VV+        +S   V L+E  +    RN        +V+ + + 
Sbjct: 292 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 343

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                              L Q+G Q+  + + +  S + A                   
Sbjct: 344 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 382

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
           +   +   VL+          LA P + A + + A    G +    T +S++    + SV
Sbjct: 383 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 442

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
              D G+ L   P++     + ++I  EVS     +   +         R A+T ++L  
Sbjct: 443 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 502

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP   
Sbjct: 503 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 559

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                    +  E +   F+          +   + +   
Sbjct: 560 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 591


>gi|37527640|ref|NP_930984.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36787075|emb|CAE16150.1| Type III secretion component protein SctC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 614

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 52/358 (14%), Positives = 120/358 (33%), Gaps = 33/358 (9%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
           +   L  +  G   V +       +++  I       +   +   L R ++D+N+     
Sbjct: 171 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGIATILSRLLSDTNVTA--- 227

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNIAGEDQ 195
                + G   +    +     +      S        + ++      ++N L+      
Sbjct: 228 -----VTGEASSPSMGESYSSRAVVQAEPSLNAIIVRDNPERMSMYAHLINALDKPSAR- 281

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---------GKFVSEGGDFS 246
           + + ++I ++  + L ++G    +  ++                     G+ +      S
Sbjct: 282 IEVALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAREKTEIKEKGESIGSAALGS 341

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +            +  LE   + + ++ PTL       A   +   +  K   +      
Sbjct: 342 LVDRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAE 399

Query: 307 VTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVEL 362
           + +  YG +L   P V+  G    I L +  E  ++         +P+      DT   +
Sbjct: 400 LKSLTYGTMLRMIPRVIQVGDSSEISLDLHIEDGNQKPNSSGQDGIPTISRTVVDTVARV 459

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G ++++ G+ +D++ Q+   +P L  IP LG LFRN+      +       P L+ 
Sbjct: 460 GHGQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 517


>gi|197121137|ref|YP_002133088.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
 gi|196170986|gb|ACG71959.1| general secretion pathway protein D [Anaeromyxobacter sp. K]
          Length = 904

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/321 (18%), Positives = 109/321 (33%), Gaps = 57/321 (17%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +   +     Q                   QV ++  I EV  
Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  +    S A   GG      G  S   
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++  + +G  
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622

Query: 304 ------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
                                      +   +  + L   P +   G I L I+ E +E 
Sbjct: 623 NLLSGSSATSTVGSALGTQGLSSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQTEE 681

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG LFR
Sbjct: 682 IAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWLFR 741

Query: 400 NSRFNREETEIFIAATPFLVK 420
           ++   +++  + +  TP++++
Sbjct: 742 DTTTTKQKVNLLLFLTPYIIR 762


>gi|313683362|ref|YP_004061100.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313156222|gb|ADR34900.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 494

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 56/262 (21%), Positives = 102/262 (38%), Gaps = 29/262 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  L      QV ++  + E+  +    IG   S        S +    +   + + 
Sbjct: 223 EQYLAALKKRMHQQVMIEAHLIELTYNDYSSIGVNWS------NFSLALNGSYTNSYNNI 276

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           G    V      F+   ++  L++   +  L+ P +  +S Q A    G Q  Y   + S
Sbjct: 277 GTAHPVYSFGIDFNPTGLIDFLKQYGDVEVLSNPKVLTLSNQPAIINVGKQLSYLYQNGS 336

Query: 302 ---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM---- 348
                    T   ++ +   G+ L+  P V   G I +RI    SE +            
Sbjct: 337 IIGTTSTPTTVTNTLGSVFVGLTLNIIPEVSEDGYIIMRINPVSSELLSDSELSSSSSQT 396

Query: 349 ----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P  RV++  + V++     +++ GL++    + +  +PLL  IP+ G LF
Sbjct: 397 SQTQTDRVMPPDTRVKQMSSIVKVKDSQKVLIGGLIEKKNYKNQTKVPLLGDIPLFGKLF 456

Query: 399 RNSRFNREETEIFIAATPFLVK 420
            NS     ++E+FI  TP LVK
Sbjct: 457 HNSTDTIRKSELFILITPILVK 478


>gi|71899610|ref|ZP_00681765.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
 gi|71730652|gb|EAO32728.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Ann-1]
          Length = 775

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           V+  L++    QV ++  +AEV        G       S         +G S       G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532

Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               S  G    K +                +   +++AL++ T +R L  P++   +  
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592

Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652

Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            P             +  +A        R+  T   + SG TI+LAGL+  +  +   G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           P LSK+PI+G LF     N    EI +  TP +V+    ++     D YS 
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761


>gi|222823425|ref|YP_002574999.1| type II protein secretion system D protein CtsD [Campylobacter lari
           RM2100]
 gi|222538647|gb|ACM63748.1| putative type II protein secretion system D protein CtsD
           [Campylobacter lari RM2100]
          Length = 463

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 63/275 (22%), Positives = 107/275 (38%), Gaps = 24/275 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K +  LN   + QV + V+I  V  +     G              +        F+  
Sbjct: 196 EKYLKDLNKRLKKQVLIDVSIVAVHLNKSHSSGINWQDLAFKLNGDDN-------DFIIN 248

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G      +      + +L+ L+       L+ P L A++ Q A  + G    Y+   SS
Sbjct: 249 KGGVKNINLKANVETKAILNLLQENGKTTVLSNPKLMALNNQQAIISIGDTINYQVKESS 308

Query: 302 TGATSVTTH---------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA------- 345
            G  + TT            G++L+  P +    +I LRI   +S+    V+        
Sbjct: 309 KGTENGTTISETYNNYSIFVGILLNILPEISDDHKIMLRINPSLSDFKYSVDNHRQNKPR 368

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P    +K  T VE+  G T++L GL+  +       +  LSKIP+ GALF+  +   
Sbjct: 369 NIAPDTIQKKLSTVVEVDDGQTLILGGLISKNTISNHNEVSALSKIPLFGALFQGKQNLE 428

Query: 406 EETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
           + +EI     P L++    + LS  +  +  EDD 
Sbjct: 429 DISEIVFIIKPSLIRA-DKKVLSLKELGFEHEDDM 462


>gi|33593235|ref|NP_880879.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|29603239|emb|CAC79584.1| bscC [Bordetella pertussis Tohama I]
 gi|33563610|emb|CAE42511.1| putative type III secretion protein [Bordetella pertussis Tohama I]
 gi|332382644|gb|AEE67491.1| putative type III secretion protein [Bordetella pertussis CS]
          Length = 600

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 81/249 (32%), Gaps = 11/249 (4%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-----SVKGV 250
           + ++  I +V  D++ ++G        ++           G  +   G          G+
Sbjct: 300 IEIEAMIVDVNTDLVNELGVTWGAQIGTTSLGYGDLGLRPGNGLPVDGAAADLAPGTLGI 359

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    L ALE       L++P++       A          +T+       +VT  
Sbjct: 360 SVSTRLAARLRALESDGQANILSQPSILTADNLGAMIDLSDTFYIRTL--GERVATVTPV 417

Query: 311 DYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
             G  L  TP  +      ++ L I  E    +       +P  R     T   +    T
Sbjct: 418 TVGTSLRVTPRYIAAKGGRQVELAIDIEDGRVLQEYPIDGLPRVRKSSISTLAVVGDEQT 477

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G      ++  E +PLL  IP LG LF +     +  E      P +V  +  + +
Sbjct: 478 LLIGGYNNRRDEEQVEKVPLLGDIPGLGFLFSSKSRAVQRRERLFLIRPRVV-AIEGKPV 536

Query: 428 SRPDDHYSV 436
             P    S 
Sbjct: 537 FSPVAGTSQ 545


>gi|71274709|ref|ZP_00650997.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|170730050|ref|YP_001775483.1| general secretory pathway protein D [Xylella fastidiosa M12]
 gi|71164441|gb|EAO14155.1| type II and III secretion system protein:NolW-like [Xylella
           fastidiosa Dixon]
 gi|167964843|gb|ACA11853.1| general secretory pathway protein D precursor [Xylella fastidiosa
           M12]
          Length = 775

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           V+  L++    QV ++  +AEV        G       S         +G S       G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532

Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               S  G    K +                +   +++AL++ T +R L  P++   +  
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592

Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652

Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            P             +  +A        R+  T   + SG TI+LAGL+  +  +   G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           P LSK+PI+G LF     N    EI +  TP +V+    ++     D YS 
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761


>gi|124515780|gb|EAY57289.1| putative general secretion pathway protein D [Leptospirillum
           rubarum]
 gi|206602163|gb|EDZ38645.1| Putative general secretion pathway protein D [Leptospirillum sp.
           Group II '5-way CG']
          Length = 555

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 50/207 (24%), Positives = 95/207 (45%), Gaps = 8/207 (3%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
            ++G ++S     G       G     G ++  S  T+L+AL+  + ++TL+ P + A  
Sbjct: 292 GAAGAAQSLTGLTGLIAGVLTGGSFNYGGVNYPSIGTLLNALQTDSDVKTLSTPEILATD 351

Query: 282 GQSASFTSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            Q A  T G    + T  S        T +   + G+ L  TP +L+  R+ L ++  ++
Sbjct: 352 SQKAKITVGEDVPFITGQSQTVGGNVMTMIQRQNVGITLDITPHILAHDRVRLNLKQTIT 411

Query: 338 EPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                          P+   R   T + + SG T+V+ GL+  +    K  IP L +IP+
Sbjct: 412 ALTNASQLIGTMAVGPTTTKRSTKTILTVRSGQTVVIGGLISSEKSLNKSTIPWLGEIPV 471

Query: 394 LGALFRNSRFNREETEIFIAATPFLVK 420
           LG LF +++  ++  ++ I  TP++++
Sbjct: 472 LGYLFSSTQNEKKRDDLLIFLTPYIIR 498


>gi|226944981|ref|YP_002800054.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
 gi|226719908|gb|ACO79079.1| type II and III secretion system protein [Azotobacter vinelandii
           DJ]
          Length = 614

 Score =  151 bits (382), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/461 (16%), Positives = 157/461 (34%), Gaps = 64/461 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A + +    + +   ++   ++ +   +   +    V      D+       
Sbjct: 188 PVSLEFREANLKLVFEVLAQTAGMNFIFDQDVSPDLKATIYVRQVPIEEAVDLLLQQGQL 247

Query: 80  --VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
              V +  T+ ++           +    + +L    L   D       ++  +   ++ 
Sbjct: 248 KHKVVNENTVLIYPNTP-----QKLKDYQELVLKTFYLTNIDANTALNMVKTLLKTRDVF 302

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           V+   +T+ +            AV L+E       +                      V 
Sbjct: 303 VDERLNTLTMRDTP-------DAVHLAERLFLAQDQANPE------------------VV 337

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           L++ + EV R  +  +G Q   T        + A    G+            +    S  
Sbjct: 338 LELEVMEVSRKRILDLGLQWPNTFGILAEDGTSAVSILGQLR----GIDSDRINFSPSPT 393

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVTTHD 311
             ++A    + + TLA P L   + + A    G +    + +S+          ++T  D
Sbjct: 394 LKINA--NDSDVNTLASPVLRVSNREQARIHIGERVPVVSATSTPSTQGPVITENITYLD 451

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMP-SYRVRKADTTVELPSGGTI 368
            G+ L   PT+     + +++  EVS         AG +P     R A TT+ L +G T 
Sbjct: 452 VGLKLEVEPTIHLNDEVAIKVGLEVSNATQLTRTEAGTIPIQVDTRNAVTTLRLRNGETQ 511

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           VLAGL+++D  +  + IP L  IP +G LF +++    ++E+ ++ TP +V+ +      
Sbjct: 512 VLAGLMRNDQGKSGDRIPGLGDIPGIGRLFGSNKDTLSKSELVLSITPRIVRNLP----- 566

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
                Y    D +       +    P       G   +G  
Sbjct: 567 -----YQNPYDMEFESGTESSLRLRPAALPRKAGAALRGQA 602


>gi|254785258|ref|YP_003072686.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
 gi|237687142|gb|ACR14406.1| MSHA type biogenesis protein, MshL [Teredinibacter turnerae T7901]
          Length = 570

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 99/260 (38%), Gaps = 24/260 (9%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----PSKSFAADFGGKFVS 240
           +    ++   QV L+  I EV+ +   + G        + G     S     + G K   
Sbjct: 284 LERSELSVRRQVVLETKIIEVQLNDGYEAGVNWGAITGALGVASDSSLVMTNNDGVKSKI 343

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS- 299
                 + GVL+    E +L+ LE    ++ L+ P ++ ++ Q A    G    + T   
Sbjct: 344 RTTQNLLSGVLNVTRIEDLLNLLETQGNVQVLSSPRISTVNNQKAIIRVGTDEFFVTGIT 403

Query: 300 ----------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
                      ++    + +   G+ L  TP +   G + + +   VS+    +    + 
Sbjct: 404 NNTTTTASNIQNSPEVLLDSFFSGIALDVTPQIAEDGDVIIHVHPLVSKVQDQLKDISIG 463

Query: 350 SYR---------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                       VR++D+ V   +G  +VL GL+++    +    P L  IP +  LF+ 
Sbjct: 464 DLDYSLPLALRDVRESDSIVRASNGQVVVLGGLMQETTSDVATKRPFLGDIPGVNVLFKG 523

Query: 401 SRFNREETEIFIAATPFLVK 420
               + +TE+ I   P +V 
Sbjct: 524 RAKRKVKTELVILMRPIVVD 543


>gi|307823412|ref|ZP_07653641.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
 gi|307735397|gb|EFO06245.1| type II and III secretion system protein [Methylobacter
           tundripaludum SV96]
          Length = 554

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 49/251 (19%), Positives = 87/251 (34%), Gaps = 17/251 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++        QV L+  I EV  D   Q G                    GG     
Sbjct: 273 ESFLSATQTQISRQVILEAKILEVTLDDNHQDGVNWESIVKEGINKAPLLTGIGGVMDPN 332

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                         F   +  +E       L+ P ++ ++ QSA    G    + T  + 
Sbjct: 333 TFASVFTLGAHSGDFRAFVELMETQGKTNVLSSPRISTLNNQSAIIKVGQDEYFATGFNG 392

Query: 302 T-----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--- 347
                           +     G+ L  TP +     I L I   +S+            
Sbjct: 393 GTPGATGVAPTAPTVLIDVFFSGISLDVTPQIDDNEDITLHIHPSISQVKKDTKDFGLDI 452

Query: 348 ---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +    VR++D+ V+  +G  IVL GL++++  + K+G+  L+ IP +G LFR +   
Sbjct: 453 TLPLALTTVRESDSIVKAKNGQIIVLGGLMQENDNEKKQGVTGLAAIPYIGNLFRVNTGT 512

Query: 405 REETEIFIAAT 415
            +++E+ I   
Sbjct: 513 TQKSELIILLK 523


>gi|297181980|gb|ADI18156.1| type II secretory pathway, component puld [uncultured
           Verrucomicrobiales bacterium HF0200_39L05]
          Length = 800

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 100/314 (31%), Gaps = 66/314 (21%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT---------------------------------G 221
           QV ++  I  V      ++G    +                                   
Sbjct: 437 QVLIEAIIVNVTLTDGMEMGVNAFMHEAAGPGDTRHIGGFMNGGPSTAGAAPSTPPTVNN 496

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS--------FETVLHALERATAIRTLA 273
            +        ++      +  G      +   FS         E  + AL  +++ + L 
Sbjct: 497 GAEQGGGDNVSNVAAAAGNALGSLGAGALSGGFSYISRYDNSLEFAMSALANSSSAKVLQ 556

Query: 274 EPTLTAISGQSASFTSGGQHLYKTV----------------SSSTGATSVTTHDYGVVLH 317
            P +       A+F +G Q  Y+                      G       + G+ L 
Sbjct: 557 TPRVQTSHAVPATFFNGEQVPYQGSSGYGGYGGGYGGYGGYGGYGGGGYTQFLNVGITLD 616

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGD---------MPSYRVRKADTTVELPSGGTI 368
            TP +     + + IQ  +SE    ++ G           P    R+A +TV +  G TI
Sbjct: 617 VTPYITPDDLVVMEIQQTISELDGFIDMGGGQQGSSGMKAPQTTEREAASTVSVRDGDTI 676

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +L G +++     + G+P L  IP+LG LF+N     + +E+ +   P ++K      L 
Sbjct: 677 LLGGFIRNSKTGTESGVPFLKDIPLLGNLFKNESNTNKRSELLVLIRPTILKSPEDAALI 736

Query: 429 RPDDHYSVEDDAKA 442
              +   +    +A
Sbjct: 737 VSQERQRLPGIREA 750


>gi|220915838|ref|YP_002491142.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219953692|gb|ACL64076.1| general secretion pathway protein D [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 902

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 60/323 (18%), Positives = 109/323 (33%), Gaps = 59/323 (18%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +   +     Q                   QV ++  I EV  
Sbjct: 451 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 502

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  +    S A   GG      G  S   
Sbjct: 503 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVNSLDMSSAIALGGFLTGYTGPISAEL 562

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++  + +G  
Sbjct: 563 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPSGLS 622

Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                                        +   +  + L   P +   G I L I+ E +
Sbjct: 623 NLLSGSGTGASSTVGSALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 681

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG L
Sbjct: 682 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 741

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FR++   +++  + +  TP++++
Sbjct: 742 FRDTTTTKQKVNLLLFLTPYIIR 764


>gi|15838128|ref|NP_298816.1| general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
 gi|9106563|gb|AAF84336.1|AE003982_9 general secretory pathway protein D precursor [Xylella fastidiosa
           9a5c]
          Length = 775

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 71/291 (24%), Positives = 112/291 (38%), Gaps = 41/291 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           V+  L++    QV ++  +AEV        G       S         +G S       G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532

Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               S  G    K +                +   +++AL++ T +R L  P++   +  
Sbjct: 533 AGLPSAAGRSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592

Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652

Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            P             +  +A        R+  T   + SG TI+LAGL+  +  +   G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           P LSK+PI+G LF     N    EI +  TP +V+    ++     D YS 
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761


>gi|15606504|ref|NP_213884.1| general secretion pathway protein D [Aquifex aeolicus VF5]
 gi|2983708|gb|AAC07271.1| general secretion pathway protein D [Aquifex aeolicus VF5]
          Length = 625

 Score =  151 bits (381), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 53/261 (20%), Positives = 103/261 (39%), Gaps = 26/261 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ L  TI E     + + G +  I G+  G +   ++        + G+F + G 
Sbjct: 331 KRRKQLLLTATIIEASAKSILEAGIRWQILGTHGGAAFKGSSLQDVYNAIKSGNFVIGGF 390

Query: 251 LDRF-------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                                +   LE+ T    ++ P +  +  Q A    G    + T
Sbjct: 391 SKSGTTVSIGGIDFFFPDLVFLFSLLEQGTGFNVVSNPKILTLDNQEALIKVGQVVPFPT 450

Query: 298 VS----SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IGVNAGD 347
                 +     +    D G+ L  TP +     + L I+ ++ E        +      
Sbjct: 451 GIKYDVNGNPIITYDYKDVGLELKITPRITGE-TVRLVIELKLQEITGYLTNEVSGVNYT 509

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P    R+ ++ V + +G T+V+ GL+     +  E IP L  IP++G LFR  R  +++
Sbjct: 510 VPITSNRELNSDVVVENGRTVVIGGLISRKSLKSTEKIPGLGDIPVMGRLFRYDRDEKDK 569

Query: 408 TEIFIAATPFLVKPVAMRDLS 428
           T +FI  TP+++   + ++L+
Sbjct: 570 TSLFIFLTPYVI--TSPQELA 588


>gi|323388142|gb|ADX60338.1| outer membrane type III secretion porin RscC [Pseudomonas
           fluorescens]
          Length = 713

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 91/288 (31%), Gaps = 18/288 (6%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L           R                   +  +++++ L++A +  V +   I ++ 
Sbjct: 285 LTPRAPVSTSKIRVEADVRNNAILIYDLPERQAMYRELISQLDVARKL-VEIDAIILDIE 343

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           R  L++ G +     S      + A     +            +  R  F   + ALE+ 
Sbjct: 344 RTQLREFGIRWGFQNSRFRGGVNMAPGSSSQL----------SIEHRDRFNADIRALEQR 393

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323
                ++ P++  +  Q A             + +     +T    G      P V+   
Sbjct: 394 GLATMVSNPSVLTLENQPAVIDFNRTQYLTAGTETATILPIT---VGTSFQVVPRVITTR 450

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
              +I L +  E         A   P  R  K  T   +    ++V+ G    +    + 
Sbjct: 451 GNHQIHLVVDIEDGNFDESNPARTSPDVRRGKVSTQAVMAEKRSLVVGGFHVTESTDKQS 510

Query: 384 GIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            IPLL  IP+LG ALF +S       E     TP ++   A      P
Sbjct: 511 KIPLLGDIPLLGKALFSSSERQNNRRERLFILTPRVIGDQADPSRYLP 558


>gi|171060554|ref|YP_001792903.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777999|gb|ACB36138.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 760

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 65/429 (15%), Positives = 138/429 (32%), Gaps = 69/429 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A + +    + +   I+  +++ +   +      + V D    D        
Sbjct: 182 PVTLEFRDAPLKLVLEALARSAGINFIMDREVRPDLK---ASIFVRDVRVEDALDLLIHN 238

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++           +    + ++    +   D       LR  +   
Sbjct: 239 HQLEKKILTDNTVLVYPNTP-----QKLREHQELVMRTFHIGNADPKQTLNLLRTMLKVR 293

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ ++   + + L      I+ ++R   ++    +                         
Sbjct: 294 DVFIDERVNLLFLRDTPDVIRAAERL--IAAQDKADPE---------------------- 329

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            V L++ I EV R  ++ +G  +    +  G S +   + G           +       
Sbjct: 330 -VVLELEILEVSRTKVRDLGITYPSEFAGPGSSGAKLFEIG----------ELNRRTIGV 378

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--------- 305
                L  L      +TLA P +   + + A    G +    + +               
Sbjct: 379 DTGYKLKLLRTDGDTKTLANPRVRVRNREKARVHVGDRVPVISSTIVGTTNLGSNNTPVT 438

Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTV 360
              +   D G+ +   PT+ +   + + I  +VS                   R A T +
Sbjct: 439 TEQIQYLDVGIKIEAEPTIYADDSVAISINLDVSSLGNQTRTNAGTTAYEVGTRNASTVL 498

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T  L GL++DD  Q   G+P L + P+L  +F + R +R   E+ +  TP LV+
Sbjct: 499 RLRDGETQALMGLIRDDDVQTGAGLPYLGEFPVLDRIFGSKRTDRRSRELVLLITPQLVR 558

Query: 421 PVAMRDLSR 429
            +   D + 
Sbjct: 559 GIEPADATL 567


>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L [Herminiimonas arsenicoxydans]
 gi|133739041|emb|CAL62089.1| Putative general secretion pathway protein D [Herminiimonas
           arsenicoxydans]
          Length = 581

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 59/331 (17%), Positives = 108/331 (32%), Gaps = 58/331 (17%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  +V + +D +  V   ++ +           S    +    ++ + QV L+  I EV 
Sbjct: 223 LDAIVGSGKDGRSVVISPQSGVVVVKAMPDELRSVSAYLKATQLSVDRQVILEAKILEVE 282

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF------------ 254
            +   Q G   S   + S      +   G    + G   +    +D              
Sbjct: 283 LNDGFQTGVNWSAFRTGSSRISGGSISPGTVLQTGGSLATGASSIDATARTFSGGQLTAL 342

Query: 255 -----------------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                                  +F  ++  LE    +  L+ P +  ++ Q A    G 
Sbjct: 343 PGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLSSPRIATLNNQKAVLKVGT 402

Query: 292 QHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
              + T  SS                ++     GVVL  TP +   G I L I   VS+ 
Sbjct: 403 DEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQIDEQGNIILHIHPSVSDV 462

Query: 340 VIGVNAGDMPS-----------YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
                  ++ +               + D+ V    G  I L GL++      +  +P  
Sbjct: 463 QTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNIIALGGLMRQGTSSDRSQLPGA 522

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +P+LG LFRN+  + ++ E+ I   P ++
Sbjct: 523 GDVPVLGNLFRNTNQSTQKRELVILLKPTII 553


>gi|307579783|gb|ADN63752.1| general secretion pathway protein D [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 721

 Score =  151 bits (381), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           V+  L++    QV ++  +AEV        G       S         +G S       G
Sbjct: 420 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 478

Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               S       K +                +   +++AL++ T +R L  P++   +  
Sbjct: 479 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 538

Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS
Sbjct: 539 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 598

Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            P             +  +A        R+  T   + SG TI+LAGL+  +  +   G+
Sbjct: 599 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 658

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           P LSK+PI+G LF     N    EI +  TP +V+    ++     D YS 
Sbjct: 659 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 707


>gi|86157114|ref|YP_463899.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773625|gb|ABC80462.1| type II and III secretion system protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 897

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 108/323 (33%), Gaps = 59/323 (18%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V+   D  +   L +   +     Q                   QV ++  I EV  
Sbjct: 446 SGEVKITADKTQNALLVQASGADFSAVQRLVEKLD--------RPRRQVFVEAVIMEVNL 497

Query: 208 DILKQIGFQ------------------HSITGSSSGPSKSFAADFGGKFVSEGGDFSV-- 247
               ++G                     S TG  S    S A   GG      G  S   
Sbjct: 498 KNSMELGVSAHGAIPYKYKGDTGVIPLSSQTGRVSSLDMSSAIALGGFLTGYTGPISAEL 557

Query: 248 --KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG-- 303
              G  +  S   ++ AL+  + +  L+ P L A   + +  T G    +++  +  G  
Sbjct: 558 KDLGFGNIPSLGLLIQALQSNSDVNVLSTPHLLATDNEESEITVGQNVPFQSGYAPQGLS 617

Query: 304 --------------------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
                                        +   +  + L   P +   G I L I+ E +
Sbjct: 618 NLLSGSGTGGSSTVGAALGTQGLGSLYAPIQRQNVELKLKIKPQINEGGNIRLTIE-EQT 676

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E +   +    P+   R   T +      TIV+ GL++D   +    IP L  +PILG L
Sbjct: 677 EEIAEKDPQLGPTTAKRSVKTQIVARDQSTIVIGGLIQDRAIRSVSKIPFLGSLPILGWL 736

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           FR++   +++  + +  TP++++
Sbjct: 737 FRDTTTTKQKVNLLLFLTPYIIR 759


>gi|239905312|ref|YP_002952051.1| hypothetical protein DMR_06740 [Desulfovibrio magneticus RS-1]
 gi|239795176|dbj|BAH74165.1| hypothetical protein [Desulfovibrio magneticus RS-1]
          Length = 707

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 52/224 (23%), Positives = 90/224 (40%), Gaps = 7/224 (3%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G      G +     S      G   +  G   + G +     E  L AL  +  ++ L+
Sbjct: 474 GTSGQGFGLNFPALSSALTSASGLGAAGAGVNFLFGNIAGNVLEAQLTALAESNKVKILS 533

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            PT+T +   SA   +G    Y + S +   T+V      + L   P V+    + ++I 
Sbjct: 534 SPTITTMENHSAFVENGMDVPYVSTSQNG--TNVQFAHATLKLEMLPHVVDNSNLRMKIV 591

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            +  +          P    R+  + + +  G TIV++GL +D +   + G+P LS IP 
Sbjct: 592 VKDDQVDTTNTVQGNPFIYKRETQSNLVVEDGDTIVISGLTRDTVGDNEAGVPYLSDIPG 651

Query: 394 LGALFRNSRFNREETEIFIAATPFL-----VKPVAMRDLSRPDD 432
           LG  F+    + +  EI+I  TP +     + P     + RP D
Sbjct: 652 LGWAFKTKASSIKREEIYIFVTPTILKEKPISPPPAVAMIRPSD 695


>gi|238793311|ref|ZP_04636937.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
 gi|238727280|gb|EEQ18808.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia intermedia ATCC 29909]
          Length = 486

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 55/301 (18%), Positives = 109/301 (36%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR--AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++  +  ++ L                S+    N + I      
Sbjct: 184 QYRDQQVKLPGLVSVLREMSQGNSLPLVAGKEPDDVNTSMPLFSADPRQNAVIIRDRQVN 243

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF ++ G   
Sbjct: 244 MPIYRSLIAQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSNSG--- 300

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                D     + D  +F   L+AL++ +  R L+ P++  ++   A          K  
Sbjct: 301 -KNSADGFSTVIGDTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 358

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVR 354
                   + +   G +L  TP ++       + L +  +  +    +++ + +P  +  
Sbjct: 359 -QGDKVAKLESITSGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQAAISSSEPLPEIQNS 417

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 418 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFLI 477

Query: 415 T 415
            
Sbjct: 478 K 478


>gi|301064238|ref|ZP_07204681.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
 gi|300441683|gb|EFK06005.1| type IV pilus secretin PilQ [delta proteobacterium NaphS2]
          Length = 756

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 100/278 (35%), Gaps = 30/278 (10%)

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS------ 224
           +   +      K+++  L++  E QV ++  I E   D  + +G Q      S       
Sbjct: 478 ANGVRAKVDKVKELVRKLDVP-EKQVMIETRIVEATTDFARDLGIQWQSLDGSRPGVQRK 536

Query: 225 -----------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
                      G   + A    G  +     +   G L   + +  L   +     + ++
Sbjct: 537 WYNSDGTERFDGSFSTNAPANWGANIGLAFGWITDGGLGSLALDASLALAQDDGKAKIIS 596

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            P +  ++   A    G    +   +  T           + L  TPTV +  +  + ++
Sbjct: 597 APKVMTVNNGPAEVARGTVRYFPIRTLDT--IDYKEIPALLSLTVTPTVSADDQ-HVTMK 653

Query: 334 TEVSEP---------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            EV++                   P    +K  + + + +G T+V+ G+ +        G
Sbjct: 654 VEVTDNRELPASTEQTEEGTTDSPPGRTEKKITSNLIVKTGDTVVIGGIYQKSEISSDSG 713

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           IP L  IP+LG LF+  R    +TE+ I  TP +VK V
Sbjct: 714 IPWLKDIPLLGYLFKAERTQESKTELLIFLTPTVVKSV 751


>gi|300697020|ref|YP_003747681.1| type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
 gi|299073744|emb|CBJ53265.1| putative type II secretory pathway, gspD-related protein [Ralstonia
           solanacearum CFBP2957]
          Length = 761

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/418 (16%), Positives = 135/418 (32%), Gaps = 55/418 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   +   A + +    + +   I+  L+K +   +      V +      D        
Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++     +            ++    L   +       L+  +   
Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTMLKIR 295

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
              ++  ++ VV+     +    + A  L E                +   N L      
Sbjct: 296 EPYIDERANMVVIR---ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSSNKLT----- 347

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                            Q+G Q+  + + +  S + A                   +   
Sbjct: 348 -----------------QLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           +   VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 387 TPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +   +         R A+T ++L  G T 
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHDGETQ 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    +
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPE 564


>gi|28198648|ref|NP_778962.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182681332|ref|YP_001829492.1| general secretion pathway protein D [Xylella fastidiosa M23]
 gi|28056739|gb|AAO28611.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Temecula1]
 gi|182631442|gb|ACB92218.1| general secretion pathway protein D [Xylella fastidiosa M23]
          Length = 775

 Score =  151 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 111/291 (38%), Gaps = 41/291 (14%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------SSGPSKSFAADFG 235
           V+  L++    QV ++  +AEV        G       S         +G S       G
Sbjct: 474 VIEKLDV-MPMQVHIEAQVAEVSLTNQLSYGVNWFFQNSVNAAADAADNGASNGTGIGLG 532

Query: 236 GKFVSEGGDFSVKGVLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQ 283
               S       K +                +   +++AL++ T +R L  P++   +  
Sbjct: 533 AGLPSAAARSGWKSIAGKVTSNGLAWTFLGKNAAAIINALDQVTQVRLLQTPSVFVRNNA 592

Query: 284 SASFTSGGQHLYKTVSSSTG------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
            A+   G +    + S +TG       +SV   D GV+L   P V   G + L I  EVS
Sbjct: 593 EATLNVGARIPINSTSINTGLGSNSTYSSVQYIDTGVILKVRPRVTKDGMVFLDIVQEVS 652

Query: 338 EP------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            P             +  +A        R+  T   + SG TI+LAGL+  +  +   G+
Sbjct: 653 TPGSLPAACSSASSTLVNSAACNVQINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGV 712

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           P LSK+PI+G LF     N    EI +  TP +V+    ++     D YS 
Sbjct: 713 PFLSKVPIVGGLFGTKAQNNNRREIIVLLTPEIVR--NPQEARNLTDEYSQ 761


>gi|212702669|ref|ZP_03310797.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
 gi|212673941|gb|EEB34424.1| hypothetical protein DESPIG_00697 [Desulfovibrio piger ATCC 29098]
          Length = 651

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 124/378 (32%), Gaps = 47/378 (12%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA--DSNIRVEMVSDTVVLHG-----MVR 152
                D K       +    +A +   +        S + V+  +    L G     M  
Sbjct: 185 YAWAEDMKVNSMDSTVTIPGVASILQAMANGTPLTGSQVTVQPSAQG-GLRGKGLIAMNA 243

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GED 194
           +   SQ A   S+    QSG     +  +   +N + +                     +
Sbjct: 244 STDTSQAAPAASQGGKDQSGTPSGPSIIADPRVNAVVVTDAEYRMSYYAKVIADLDKPVE 303

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGS----------SSGPSKSFAADFGGKFVSEGGD 244
            V +   I ++  D  +  G   S TG+          + G S S      G   + G  
Sbjct: 304 LVEIHAAIVDIDSDFSRDFGVNWSGTGAYGKHWTGGGSAGGTSTSGIFPSAGASSAGGLS 363

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           +S         F   + ALE     R L +P++  +    AS  +   +      S   +
Sbjct: 364 YSTLYSHGSDYFLARVTALEEDGQARVLGKPSVLTMDNVQASLENTSSYYVPV--SGNES 421

Query: 305 TSVTTHDYGVVLHFTPTVLSP-----GRIGLRIQTEVSEPVIG----VNAGDMPSYRVRK 355
           + +   D G VL  TP ++         I L +  +           V+  ++   +  K
Sbjct: 422 SDLFKIDSGTVLKVTPHIIPGLPGQADSIKLMVSVQDDRDDGSNLFSVDPNNLSPIKQTK 481

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T   +  G ++++ G   +     + GIP L  IPILG LF  +    +  E  I  T
Sbjct: 482 INTQAIVGEGQSLLIGGHYYEIQSDAETGIPGLKNIPILGGLFGATGKKHQRMERLILIT 541

Query: 416 PFLVKPVAMRDLSRPDDH 433
           P +V+     ++    D 
Sbjct: 542 PRIVRMDTASNVPTRVDD 559


>gi|300690947|ref|YP_003751942.1| type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
 gi|299078007|emb|CBJ50649.1| putative type II secretory pathway, gspd-related protein [Ralstonia
           solanacearum PSI07]
          Length = 759

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 75/418 (17%), Positives = 143/418 (34%), Gaps = 55/418 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   +   A + +    + +   I+  L+K +   +      V +      D        
Sbjct: 184 PINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDLILST 240

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++     +            ++    L   D       L+  +   
Sbjct: 241 TQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKAMLKIR 295

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +  ++  ++ VV+        +S   V L+E  +    RN        +V+ + +     
Sbjct: 296 DPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS----- 343

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                          L Q+G Q+  + + +  S + A                   +   
Sbjct: 344 -------------TKLTQLGVQYPNSFTLTPLSATGATSLTLSDFKGLNS----DRIGVS 386

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHD 311
           +   VL+          LA P + A + + A    G +    T +S++    + SV   D
Sbjct: 387 TPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESVQYID 446

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTI 368
            G+ L   P++     + ++I  EVS     +   +         R A+T ++L  G T 
Sbjct: 447 VGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLHDGETQ 506

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP    D
Sbjct: 507 LLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSHRPD 564


>gi|71905856|ref|YP_283443.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71845477|gb|AAZ44973.1| type II and III secretion system protein:NolW-like:Secretin/TonB,
           short N-terminal [Dechloromonas aromatica RCB]
          Length = 715

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 55/256 (21%), Positives = 95/256 (37%), Gaps = 27/256 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF---- 238
            G  QV ++  + E +    + +G +            GS    +   +   G       
Sbjct: 453 TGARQVLIEARVVEAQDSFNRALGGKFGFLNKQAVQPAGSGINVAGGSSTTAGQSTSTPM 512

Query: 239 -------VSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                   S GG  ++      FS      L ALE     + ++ P +   +   A    
Sbjct: 513 VGVNLPSPSTGGSLALSLFTASFSRILNLELAALESDGLGKIVSSPRVITANNVKAKIED 572

Query: 290 GGQHLYKTVSSSTGAT--SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----V 343
           G +  Y T  SS G T  +V+     + L  TP +   G + + +  +  E        +
Sbjct: 573 GTEIPYVTTQSSGGTTTATVSFKPAKLSLEVTPQITPEGTVRMNLVVKKEEADWTKAVVL 632

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           N    P  +    +T V + +GGT+V+ G+   D Q   E +PLL  IP  G LF+    
Sbjct: 633 NGYANPPIKSSVVETNVVVENGGTVVIGGVFITDTQNSVEKVPLLGDIPFFGWLFKYKND 692

Query: 404 NREETEIFIAATPFLV 419
             +  E+ +  TP ++
Sbjct: 693 IGKRRELLVFITPRVI 708


>gi|254496546|ref|ZP_05109416.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
 gi|254354245|gb|EET12910.1| type II protein secretion LspD [Legionella drancourtii LLAP12]
          Length = 482

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/368 (15%), Positives = 128/368 (34%), Gaps = 28/368 (7%)

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G  +G      +         ++        +   T    +  S       S      G
Sbjct: 95  VGTTMGTITRPALDSTNPASNLVNSSSNSQNTNSSSTTASPLNSSGATANTSSANTQNEG 154

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
              + + S + +    T               K+V+  L+I    Q+ ++  +AE+ ++ 
Sbjct: 155 ---STKPSVQIIGEPNTNSIILNAPASVIRVLKRVIAQLDIK-PAQLLIEALVAEINQED 210

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
              +G +      +   S               G   +        F+  ++AL RA   
Sbjct: 211 ANDLGIEWGSDQQTGKASGFR-----------NGFAIINSQTKGADFQAQIYALARAHKA 259

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTTHDYGVVLHFT 319
             L+ P++  +  + A    G Q    + +          SS+  T+    +  + L+  
Sbjct: 260 NILSTPSVVVLDNRQAKILVGKQVSVASSNYPNNANGTAASSSPYTTFDRVNVALHLYVR 319

Query: 320 PTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           P +     I ++I       +P +       P++R+    T+V + SG  +VL GL +D 
Sbjct: 320 PQITRGNGIQMQIDQGNDTLDPPVAAETSTTPTFRISSIVTSVHVESGNVVVLGGLTQDS 379

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           +      +P+L  IP +G LF+ +   R++  + +   P +++     +++   D Y+  
Sbjct: 380 LSNDNNRLPILGDIPGIGRLFKRNVNTRDKRVLMVFIKPIILRN-ERENMNLTHDKYNHT 438

Query: 438 DDAKAFFF 445
              +  + 
Sbjct: 439 RQYELDWL 446


>gi|83746420|ref|ZP_00943472.1| GspE-related protein [Ralstonia solanacearum UW551]
 gi|83726961|gb|EAP74087.1| GspE-related protein [Ralstonia solanacearum UW551]
          Length = 744

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 77/460 (16%), Positives = 151/460 (32%), Gaps = 66/460 (14%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV--- 79
            AK P   +   A + +    + +   I+  L+K +   +      V +      D    
Sbjct: 163 AAKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALDL 219

Query: 80  ---------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
                     + +  T+ ++     +            ++    L   +       L+  
Sbjct: 220 ILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNAEAKQTGAMLKTM 274

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +      ++  ++ VV+        +S   V L+E  +    RN        +V+ + + 
Sbjct: 275 LKIREPYIDERANMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS- 326

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                              L Q+G Q+  + + +  S + A                   
Sbjct: 327 -----------------TKLTQLGIQYPNSFTLTPLSATGATSLTLSDFKGLNS----DR 365

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSV 307
           +   +   VL+          LA P + A + + A    G +    T +S++    + SV
Sbjct: 366 IGVSTPSAVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSESV 425

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPS 364
              D G+ L   P++     + ++I  EVS     +   +         R A+T ++L  
Sbjct: 426 QYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRSANTVLKLHD 485

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G T +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP   
Sbjct: 486 GETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKP--- 542

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
                    +  E +   F+          +   + +   
Sbjct: 543 --------SHRPETNFMEFWSGTETNARARRTLPDGQAPA 574


>gi|218887514|ref|YP_002436835.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758468|gb|ACL09367.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 666

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 51/287 (17%), Positives = 97/287 (33%), Gaps = 25/287 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSIT---GSSSGPSKSFAAD--------FGGKFVSEGGD 244
           V +   I ++  D  + +G  +  T   G        F+            GK +  G  
Sbjct: 319 VEIHAAIVDIDSDYKRDLGVTYQGTAGSGQRWAGGGDFSTGTDAFPTLPSPGKPLGNGLT 378

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            S    +    F   + ALE+    R L  P++  +    A+  +   +          A
Sbjct: 379 LSTIYTMGSDYFLAQVTALEKNGEARMLGRPSVLTVDNVQATLENTSTYYI--EVQGYQA 436

Query: 305 TSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRK 355
             +   + G VL  TP       G   +++   V +            N+  +P  +  K
Sbjct: 437 VDLFKVEAGTVLRVTPHIIRNEDGGQSIKLVVSVQDDQNDNSSATSTSNSTAIPPVKQTK 496

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            +T   +  G ++++ G   +       GIP+L  IP+LG LF+ +    +  E  I  T
Sbjct: 497 INTQAIVGGGQSLLIGGYYYEQKSTTDTGIPILMDIPVLGHLFKTNSKTSKRMERLILIT 556

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
           P +V+   + +L    +        ++      N+           G
Sbjct: 557 PKVVR---LNELPATPERVDDPSFHRSATQGDYNEKVPAPAPRRSGG 600


>gi|74316567|ref|YP_314307.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056062|gb|AAZ96502.1| putative Type II secretory pathway component PulD [Thiobacillus
           denitrificans ATCC 25259]
          Length = 581

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/271 (21%), Positives = 109/271 (40%), Gaps = 24/271 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                 +  ++ ++ +  + + QV ++ TI EV      + G   S     +        
Sbjct: 287 GTAKQQALVQQYLDRVMQSAQRQVLIEATIVEVTLKDQYRAGIDWSKALEGTTGWTINTL 346

Query: 233 DFGGKFVSEGGDFSVKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             G   ++      ++          F   +  LE     + L+ P L A++ Q+A    
Sbjct: 347 SGGSNALANTLTPFIQATYTNAGSNGFTAAIDLLESFGKAKVLSSPKLMALNNQTALLKV 406

Query: 290 GGQHLYKTVSSSTGAT-----------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
               +Y  V + T AT           +  T   G+V+  TP +   G + L ++  +S 
Sbjct: 407 VDNLVYFNVKADTTATANVGTTTTFTTTPQTVPVGIVMTMTPQINENGMVSLTVRPTISR 466

Query: 339 PVIGVNA----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            V  V              +P  +VR+ ++ +++ SG T++L GL++DD    ++GIP L
Sbjct: 467 NVGFVRDPNPSIPVAIPNQVPVIQVREMESLLQVRSGQTVILGGLIQDDSNNARDGIPGL 526

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
           S+   +GA+F        +TE+ I   P +V
Sbjct: 527 SRPEGIGAVFGQHEQINSQTELVIFLRPIVV 557


>gi|115524675|ref|YP_781586.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
 gi|115518622|gb|ABJ06606.1| general secretion pathway protein D [Rhodopseudomonas palustris
           BisA53]
          Length = 789

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/266 (21%), Positives = 113/266 (42%), Gaps = 9/266 (3%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R        +          +  ++ +  ++     QV ++VTIAE+      Q G Q  
Sbjct: 496 RVTPDVTNNVLFVETTPQTYAVVERAIREMD-RFPTQVNIEVTIAEITLTSELQYGVQFF 554

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +   +       A+    +    G +     +LD    + VL AL + T+++ L+ P+L 
Sbjct: 555 LKSGNFSAGLGGASGIPLRTSYPGLNLVSGALLDP---QVVLDALAQFTSVKVLSSPSLV 611

Query: 279 AISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            +  Q A    G Q         +  S+   ++V   D G++L+  P V + G + L ++
Sbjct: 612 VLDRQPAVLQVGDQIPILTRQLTSAESTATVSNVDLKDTGIILNVLPRVNANGLVTLNVE 671

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            ++S  V        P+   R+  + + + SG T++LAGL+ D     + G+P++S+I +
Sbjct: 672 QQISNVVSTQPDTLTPTISQRRVKSVISVSSGQTVLLAGLITDGQNINRNGLPVVSQIKV 731

Query: 394 LGALFRNSRFNREETEIFIAATPFLV 419
           L  L  +       TE+ I   P ++
Sbjct: 732 LSDLLSSHDRTASRTELIIFIRPKII 757


>gi|182413440|ref|YP_001818506.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177840654|gb|ACB74906.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 673

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 69/371 (18%), Positives = 124/371 (33%), Gaps = 46/371 (12%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI--------- 154
            +      +  L       +   L + ++  N   +  + T    G VR           
Sbjct: 276 AEPNTRNEVIYLKHASAKDVAPLLSQLVSGQNTAAQKAAGT---SGSVRAPVPQPNQPNQ 332

Query: 155 -QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------DQ 195
                 AV L+   +  +  + Y      +  N + ++G                    Q
Sbjct: 333 AATPDAAVALAGATVDTNEFSSYITILPDERSNSIVVSGTVDDIRLIRDLVEKVDILLAQ 392

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V IAEV  D   + G        ++    S             G    +GV++  +
Sbjct: 393 VRIEVIIAEVTLDDSNKTGLSALNLTVATPQGSSQGTHITNFAGKVAGWDISQGVVNPLA 452

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------- 302
           F+  L      + ++ L+ PT+     + A    G      T   +T             
Sbjct: 453 FQAALGDAGTRSNVKILSAPTIVTTHNKEAQILVGESLPIITGIYTTAVGSTTPTEPGFA 512

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTV 360
               VT  D  + L  TP +   G I L+I  +V +    I +N  D P    R+A + +
Sbjct: 513 QNQQVTYKDIAIDLKVTPLIGDDGSIQLKIDQKVDDVVRTISINNSDQPVIGRRQATSFI 572

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  +VL GL +    + +  +  L +IPIL  LF     +   TE+ +   P ++ 
Sbjct: 573 NVSDGQIVVLGGLQRTANTRGRNKLGFLVEIPILSHLFGARTNSVRRTELLLFIRPHVIA 632

Query: 421 PVAMRDLSRPD 431
           P A    +   
Sbjct: 633 PDAGTADATNT 643


>gi|254186538|ref|ZP_04893055.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
 gi|157934223|gb|EDO89893.1| general secretion pathway protein D [Burkholderia pseudomallei
           Pasteur 52237]
          Length = 316

 Score =  150 bits (379), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 54/222 (24%), Positives = 89/222 (40%), Gaps = 14/222 (6%)

Query: 212 QIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           Q G  +SI   ++G   +     G  G   +      +  +        +L     ++  
Sbjct: 4   QTGLGNSIVNLTAGAVTNPGGTLGSLGSITNGLNIGWLHNMFGVQGLGALLQFFAGSSDA 63

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPT 321
             L+ P L  +  + A    G      T S S   +  T          D G+ LH  P 
Sbjct: 64  NVLSTPNLVTLDNEEAKIVVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQ 123

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
           +   G + L++ TE S  V G N        P++  R   +TV   +G  IVL GL++D+
Sbjct: 124 ITEGGILKLQLYTEDSAVVPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDN 183

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            Q     +PLL  IP +G LFR+    R++T + +   P ++
Sbjct: 184 YQVSNTKVPLLGDIPWIGQLFRSEGKTRQKTNLMVFLRPVII 225


>gi|312897631|ref|ZP_07757048.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
 gi|310621264|gb|EFQ04807.1| bacterial type II/III secretion system short domain protein
           [Megasphaera micronuciformis F0359]
          Length = 372

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 69/393 (17%), Positives = 138/393 (35%), Gaps = 68/393 (17%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------VHSPR 85
           A+   +      +G+   ++I +++ +   + V + +V  +      V+      +    
Sbjct: 31  AHDVPLRTILEGLGRSAGMNILIDESVKGNITVYLHNVS-AQEALQSVIHEAGLCLEEKN 89

Query: 86  TMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
            + L  G+  GQ          K +     L     A         +   ++     S+ 
Sbjct: 90  GIILIEGEGEGQ----------KTVSEAFPLSYMKAADAAEVAGVALHQGSVMAVGGSNA 139

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +V+ G    +  +++ V+  +                             QV ++  I  
Sbjct: 140 IVMTGRHSDVTAAKQLVQAVD-------------------------RAPQQVDVEAEILS 174

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           + ++ +K++G   S +    G  K                            E  LHA  
Sbjct: 175 LNKEAVKELGIDWSWSEGGGGVGKPRL----------------------PYIEARLHAFV 212

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--VTTHDYGVVLHFTPTV 322
                  LA+P + A +G  A    G +    T   + G         + G++L +TP +
Sbjct: 213 SDGKASILAKPHIMATNGTEARIFIGDRIPVVTERVTGGERYATTEYKEAGILLQYTPYI 272

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            + G +   I  EV  PV  V          R+ DT V + +G  IV+ GL+  +  +  
Sbjct: 273 HTDGTVTANIHGEVGMPVY-VRDLRAYRVATRQVDTQVHIKAGERIVIGGLIGKEETENL 331

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +P+L  +P++G LFR+   +++ETE+ I   
Sbjct: 332 RKVPILGDLPLIGKLFRSRYRSKKETEVIILIK 364


>gi|283852780|ref|ZP_06370044.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
 gi|283571861|gb|EFC19857.1| type II and III secretion system protein [Desulfovibrio sp.
           FW1012B]
          Length = 634

 Score =  150 bits (379), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 51/216 (23%), Positives = 86/216 (39%), Gaps = 6/216 (2%)

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
            G   S  G +     +  +   G   +  G   + G +     E  L AL     I+ L
Sbjct: 401 FGGGTSGQGFAINNPANLTSAATGLGAAGTGLNFLFGKIGENVLEAQLTALAEENKIKIL 460

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + PT+T +   SA   +G    Y + S +   T+V      + L   P V+    + ++I
Sbjct: 461 SSPTITTMENLSAFVENGKDIPYVSTSQNG--TNVQFAHATLKLEMLPHVVDGSNLRMKI 518

Query: 333 QTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             +  +            P    R+  + + +  G TIV++GL +D +     G+P L  
Sbjct: 519 VVKDDQVDPNQGNWVQGNPPIYKRETQSNLVVEDGDTIVISGLTRDTVTDANSGVPFLRD 578

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV--KPVAM 424
           IP LG  F+    +    E+ I  TP ++  KPVA 
Sbjct: 579 IPGLGWAFKAKSSDIHREEMLIFITPVILQEKPVAP 614


>gi|120609177|ref|YP_968855.1| YscC/HrcC family type III secretion outer membrane protein
           [Acidovorax citrulli AAC00-1]
 gi|58700619|gb|AAW81010.1| HrcC [Acidovorax citrulli]
 gi|120587641|gb|ABM31081.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax citrulli AAC00-1]
          Length = 683

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/294 (19%), Positives = 109/294 (37%), Gaps = 16/294 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
            T   + +A E    F +  G N          M+     I   DQ    V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             D +  +G   S+   +S  S +          S     S   +         ++ALE 
Sbjct: 458 NSDSVDALGVNWSLRAGTSSISTNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
               R L++P++  ++ ++A      + +     +     ++   + G +L  TP V   
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTPV 569

Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+  +++   + +     N    +P  +  +  T   +  G ++++ G+  +       
Sbjct: 570 DGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVIAQDAPTTVSSISPEVRKP 683


>gi|90417988|ref|ZP_01225900.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337660|gb|EAS51311.1| putative general secretion pathway (GSP) protein D [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 700

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 63/285 (22%), Positives = 122/285 (42%), Gaps = 14/285 (4%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL-NIAGED-QVTLKVTIAEVR 206
           G    + D   ++ +     + S       +   KV+  L +I     QV + VT+AEVR
Sbjct: 392 GASGGMLDGATSLRIEPDLSNNSLVIYGDRAVRGKVLQALAHIDVPQMQVAVNVTMAEVR 451

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD----FSVKGVLDRFSFETVLHA 262
            +   + G Q+ I     G  +   +    + +++G           V    S + VL+A
Sbjct: 452 LNDQLRYGVQYFIKSGDIGLGRDKGSVGLFRTIADGIAREVPGFNFVVGSESSPDIVLNA 511

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------TSVTTHDYGVV 315
           L+  T +R L+ P+L  +  + A F  G Q    T + ++           V   D G++
Sbjct: 512 LDAVTDVRVLSSPSLVVMENEVAKFRVGDQIPIVTRTVNSVEDANAPISNEVEYRDTGII 571

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           ++  P +   G + + I+ E+S       +   P    R   +T+ +  G T++L GL+ 
Sbjct: 572 MNVRPRIAENGVVTMVIEQEISSVTANAGSLT-PVISNRSVASTISVVDGQTVLLGGLIS 630

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +     ++GIP L+++ ++G LF +       TE+ I   P +++
Sbjct: 631 EQSDVGRDGIPGLNRLKVVGNLFGSKSRADVRTELLILIRPSVIR 675


>gi|319955805|ref|YP_004167068.1| general secretion pathway protein d [Nitratifractor salsuginis DSM
           16511]
 gi|319418209|gb|ADV45319.1| general secretion pathway protein D [Nitratifractor salsuginis DSM
           16511]
          Length = 664

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 56/288 (19%), Positives = 110/288 (38%), Gaps = 22/288 (7%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                  V   E              +  +V++ +++    QV +K  + E+     + I
Sbjct: 300 APQKAMVVADVERNALIVLATGEQYQNIMQVIHRIDVEKP-QVFIKARVVEINSKKARAI 358

Query: 214 GFQHSITGSSSGPSK--SFAADFGGKFV------------SEGGDFSVKGVLDRFSFETV 259
           G ++ ITG         S   + GG+ V            S+   FS+  V   F+    
Sbjct: 359 GAKYGITGGWLTSHGLISVGGNMGGEAVNISQRLMSLVQQSDDNAFSLSDVKSLFALGIN 418

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA------TSVTTHDYG 313
           +  L++  A   L+EP++   +   +    G      T S++          +    D G
Sbjct: 419 IDLLQQDGAAHVLSEPSILCTNNMESELFVGETRSILTSSTAGDNKNDLSRNNYEREDIG 478

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAG 372
           + L   P + S  ++ L++   + +           P+   R   T   + +G T++L G
Sbjct: 479 LTLKVKPRLSSNNKVALKVDAIIEDVDDSSGYNSPTPTTTKRTITTNATVRNGQTVILGG 538

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L+K+        +P    IPI+G LFR+    + + ++ I  TP++V+
Sbjct: 539 LIKNLTGAAHNKVPFFGDIPIIGRLFRDEGTAQRKVDLVIYLTPYVVR 586


>gi|9626242|ref|NP_040579.1| G IV protein [Enterobacteria phage Ike]
 gi|138049|sp|P03667|G4P_BPIKE RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14956|emb|CAA26076.1| unnamed protein product [Enterobacteria phage Ike]
          Length = 437

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             DQV ++  + E        + F                +  G    + GG F   G+ 
Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304
           +       + A++  +  + ++ P +   SGQ+   + G    + T   +          
Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            ++   D GV L  TP V+  G++ L I T+       + A D+     R   TTV++  
Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           G T++L GL+  +       +P    +P++G LFR+   +  E  +F+  T  ++K +
Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437


>gi|118594956|ref|ZP_01552303.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
 gi|118440734|gb|EAV47361.1| general secretion pathway protein D [Methylophilales bacterium
           HTCC2181]
          Length = 1061

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 59/292 (20%), Positives = 110/292 (37%), Gaps = 30/292 (10%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G V +              +  +  +Q A     K ++ L      Q+ ++  + E+ 
Sbjct: 495 LAGQVSSQL-----------LVIYNPNDQKALLRVNKAISELIDRPAKQILIEGIVLEIA 543

Query: 207 RDILKQIGFQHSITGSSS-----GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
              L ++G   S T ++      G      +   G   +     +  G     SF   L 
Sbjct: 544 SSELSKLGVNWSTTRTNGSIISLGTLAEITSVAAGSAAASVAYTTAGGTGAGPSFAANLE 603

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---TTHDYGVVLHF 318
           AL   T  + L++P+L  +  + AS   G         ++    S    T    G++L+ 
Sbjct: 604 ALITKTKSQVLSKPSLMTLDNRQASIKVGTNIPIAASVTTAVGASTAGFTYLPVGIMLNI 663

Query: 319 TPTVLSPGR-IGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
            P +    + I + I   +S+             GV     P+  +RK  T   + +   
Sbjct: 664 RPRISDDNQEISMLIDATISQKVDDEDVIIYNSTGVAMASAPTTTLRKIQTYARVNNESP 723

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++AGL+         G+P+LS IP+LG LF     +  +TE+ +  TP ++
Sbjct: 724 LIIAGLVSKQKTMTTTGVPVLSSIPLLGGLFSFESPSNVDTEVVLIITPTII 775


>gi|74317318|ref|YP_315058.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
 gi|74056813|gb|AAZ97253.1| type II secretion system protein D [Thiobacillus denitrificans ATCC
           25259]
          Length = 667

 Score =  150 bits (378), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 71/437 (16%), Positives = 142/437 (32%), Gaps = 60/437 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A +      I +   I+   +K +   +   V  + V +             
Sbjct: 182 PITLEFRNADLKAIFEVISRSAGINFIFDKDVRQDL---VASIFVRNTRIESAIDFLLMS 238

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 V +  T+ ++     +                  L   D       ++  +   
Sbjct: 239 NQLAKKVLNENTVLVYPNIPAKT-----RDYQDLRAKTFYLASMDAKQALNIVKTIVKTR 293

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ ++   +T+V+            A+ L+E  L      +       +V+ +       
Sbjct: 294 DVVIDEKLNTLVMRDTP-------DAIRLAEKLLGSQDLAESEVLLEVEVLEVS------ 340

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                       R  L  IG       +      S A       +         G++   
Sbjct: 341 ------------RSRLSDIGITPPTEATFRTLGPSGAPSTTLADLKGLNS----GLIGVS 384

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG------ATSVT 308
           S    + A         LA P +   + + A    G +    T + ++         +V 
Sbjct: 385 SLSASVRARMDNGDTNLLANPRIRVKNREKAKVHIGERVPIITTTVTSAGTTSFLPETVN 444

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSG 365
             D G+     P +     + +++  EVS      +  +  ++     R A TT+ L  G
Sbjct: 445 YLDVGIKFEVEPLISLNDEVTIKVALEVSSLGQKSVTKSGSEVYRVGTRNASTTLALRDG 504

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T  LAGL+ D+ ++   GIP   +IP +G LF +   + ++TEI +  TP +V+ +   
Sbjct: 505 ETQALAGLISDEERETVNGIPGFGRIPAIGRLFASKSNSTDKTEIVLLITPHIVRNLDRT 564

Query: 426 DLSRPDDHYSVEDDAKA 442
            L+  D  ++   D+ A
Sbjct: 565 ALTASD--FAAGTDSAA 579


>gi|251772573|gb|EES53138.1| putative general secretion pathway protein D [Leptospirillum
           ferrodiazotrophum]
          Length = 565

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 53/195 (27%), Positives = 88/195 (45%), Gaps = 8/195 (4%)

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            G       G       ++  +   +L+ALE  + +RTL+ P + A  G  A  T G   
Sbjct: 314 NGLVAGVLTGGTFKYNGVNYPNIGELLNALETYSDVRTLSTPEILATDGVKAKITIGEDV 373

Query: 294 LYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM- 348
            + T  S        T +   + G+ L  TP +LS  R+ L ++  +S            
Sbjct: 374 PFITGQSQTVGGNVMTMIQRQNVGITLELTPHILSHNRVRLDVKQTISALTNASQVIGTI 433

Query: 349 ---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P+   R A T + + SG T+V+ GL+  +     +GIP LS IPILG LF N+   +
Sbjct: 434 AVGPTTTKRSAKTNLTISSGQTVVIGGLISKETSINDQGIPFLSDIPILGYLFSNTNNEK 493

Query: 406 EETEIFIAATPFLVK 420
           +  ++ I  TP++++
Sbjct: 494 KRDDLLIFLTPYVIR 508


>gi|15596579|ref|NP_250073.1| type II secretion system protein [Pseudomonas aeruginosa PAO1]
 gi|9947326|gb|AAG04771.1|AE004567_10 probable type II secretion system protein [Pseudomonas aeruginosa
           PAO1]
          Length = 759

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 58/291 (19%), Positives = 109/291 (37%), Gaps = 23/291 (7%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +L G+   I  S   VE                   + ++  ++     QV ++VT+A V
Sbjct: 442 LLGGLAAGISGSGTIVEDENRNAILFRGAARTWQQMQGLLREMDKPAR-QVLIEVTVASV 500

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                +++G +  +   S   + S  +             +  G          + A+  
Sbjct: 501 SLSDTQELGVEWEMLNGSFNSATSTGSKGSAGKGGFNYVINTAGGN-----TAAIQAMAD 555

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDYGVVL 316
              +R LA P +   SG+ A+   G      T           S+     +     G +L
Sbjct: 556 NQRVRVLATPRILVKSGEQANINVGRDIPIPTAQVNDDSTTAGSTNLRNEIAYRSTGTIL 615

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGGTI 368
           +  P V S  R+ L +  E+S+       G          P       +T++ L SGG++
Sbjct: 616 NVAPVVYSDSRVDLTVSQELSDSGGSSGGGGKASGGGISAPEISRTSLETSLTLKSGGSV 675

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           ++ GL++D+I     G+PLL  IP +G LF   +  +   E+ +   P+++
Sbjct: 676 LMGGLIRDNITDSNAGVPLLKDIPGIGFLFGRQKAVKTREEVIMLIQPYVL 726


>gi|284006883|emb|CBA72151.1| type III secretion component protein SctC [Arsenophonus nasoniae]
          Length = 598

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 32/335 (9%)

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
             L + +   +  + ++  ++    D  I+V  ++   +L  MV   + SQ   +     
Sbjct: 180 LPLAIQVFSLKYASAVDRIIK--YRDEQIQVPGLAT--ILANMVSAAEISQINDD---KI 232

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVT----------------LKV--TIAEVRRDI 209
           +SQ      A    +  +N + +    +                  ++V  +I +V  D 
Sbjct: 233 ISQKPNGHKAMIQPEPSINAIIVRDLPERMPMYQRLIHSLDKPTARIEVALSIIDVNADN 292

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L ++G    + G  +G              +     S+            +  L+     
Sbjct: 293 LSELGIDWGV-GLKAGQHHQINIASTLTQAASPVLGSLLDKQGLNYLVAKVSLLQSQGIA 351

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG--- 326
           + +++PTL       A       +  K   +      +    YG +L  TP V+  G   
Sbjct: 352 QVVSKPTLLTQENTQAIIDHNETYYIKV--NGERVAELKGITYGTLLQMTPRVIQIGDKP 409

Query: 327 RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            I L +  E  ++         +P+      DT   +  G ++V+ G+ +D++ +    +
Sbjct: 410 EIHLVLHIEDGNQKPNSSGVDGIPTINRTIIDTVARVEQGQSLVIGGIFRDEVIKTSRKV 469

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           PLL  IP+LGALFR+               P ++ 
Sbjct: 470 PLLGDIPLLGALFRSQSNQTRRVVRIFIVEPKIID 504


>gi|149197164|ref|ZP_01874216.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
 gi|149139710|gb|EDM28111.1| secretion protein XqhA [Lentisphaera araneosa HTCC2155]
          Length = 738

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 51/242 (21%), Positives = 94/242 (38%), Gaps = 17/242 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGD 244
           QV ++VT  EV      + GF+++ T          G   G S +    FG     + G 
Sbjct: 470 QVMIQVTAVEVELGEGLEFGFEYAATDKFGSGDNESGVGVGSSTADTPSFGPPGGLDPGI 529

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSS 300
             +       +    + A+   ++   L  P +  ++G+ A    G          + SS
Sbjct: 530 SLLLQSAGVDNEFAFVQAVAGDSSSELLFTPHILTLNGEEAEINIGQNVPVRAGTTSTSS 589

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKAD 357
           +     +     GV+L   P V +   + L  +  +S  V         D PS+   K  
Sbjct: 590 NNDFEQIEYRSTGVLLRVLPQVSADKYVTLDTEIVISSIVEQSPEEVLIDSPSFNENKVT 649

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + + +  TI+L G+++    +   G+P L  IP +G LF+++     E E+ I     
Sbjct: 650 TKLLIKNNETILLGGIIQKVASESTSGVPFLKDIPGIGFLFQSATTGSREKELVIFIKAT 709

Query: 418 LV 419
           ++
Sbjct: 710 VI 711


>gi|148652211|ref|YP_001279304.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
 gi|148571295|gb|ABQ93354.1| type IV pilus secretin PilQ [Psychrobacter sp. PRwf-1]
          Length = 642

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 103/296 (34%), Gaps = 43/296 (14%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + T          + S+   ++  ++I    QV ++V +     +  K++G +  +    
Sbjct: 349 ARTNTLIIKDTADSLSNIHALIKQIDIPVR-QVMIEVRMVSATDNFSKEMGVKWGLLSKG 407

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVL-------------------------------- 251
              +         + +++   FS                                     
Sbjct: 408 VAHNDDLLVGASDQTLADLKSFSAPNTAYKGRNKSRAGYAITRPDNLNVDLGISNPAGRI 467

Query: 252 -------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                       +  L A++       ++ P +  +  Q+A+ +SG +  Y++ S   G 
Sbjct: 468 AFGLLSMSDLMIDLELSAMQAEGRGEVISTPKILTLDKQTATVSSGTKIPYQSESEGGGT 527

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
           T     +  + L  TP++    +I L++  E   P        +      +  T V +  
Sbjct: 528 T-TQFEEALLSLQVTPSITPEDKISLQLNIENGRPNPV--GNGVILIDTDRLITRVTVGD 584

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G T+VL G+ ++ I    + +P    +P +G LF+      ++ E+ I  TP L++
Sbjct: 585 GQTLVLGGIYRNQIFNNTQKVPFFGDLPYIGRLFKQDLRRNDQQELLIFVTPKLMQ 640


>gi|58091874|gb|AAW65366.1| gene IV protein [synthetic construct]
          Length = 437

 Score =  150 bits (378), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 11/238 (4%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
             DQV ++  + E        + F                +  G    + GG F   G+ 
Sbjct: 204 ARDQVLIQSLMFETSLVNGVDLSFAAGSASGDKVAGGFNTSALGTALSTAGGSF---GIF 260

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGA 304
           +       + A++  +  + ++ P +   SGQ+   + G    + T   +          
Sbjct: 261 NGNVLALSIQAVKNDSNSKVISTPRILTQSGQTGYISVGQNVPFVTGKVTGEAANVNNPF 320

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            ++   D GV L  TP V+  G++ L I T+       + A D+     R   TTV++  
Sbjct: 321 QTIERRDVGVSLKVTPVVMGNGQLVLTIDTKADSLTSQMTASDI-ITNQRHMQTTVQIKD 379

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           G T++L GL+  +       +P    +P++G LFR+   +  E  +F+  T  ++K +
Sbjct: 380 GQTLLLGGLIDSNTTDGNRSVPWFESVPVIGWLFRSHSDSHNERTMFVLLTAHVIKAL 437


>gi|253995615|ref|YP_003047679.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
 gi|253982294|gb|ACT47152.1| pilus (MSHA type) biogenesis protein MshL [Methylotenera mobilis
           JLW8]
          Length = 610

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 70/368 (19%), Positives = 136/368 (36%), Gaps = 45/368 (12%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
             ++        +  L+   +   A  +      +A  + +    ++  V      T   
Sbjct: 211 TALLAESDKEIIIGRLEADKQSASADNQSAKAGSVALGDTQKTEANNVKVDAQKAFTEYK 270

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
           +  A  +     +     +  N   ++V   ++ +  + + QV ++ TI EVR     Q 
Sbjct: 271 TLFAANVISNREAGVISVRGTNKQHERVQEFLDKVLASAKRQVLIEATIVEVRLSDSFQA 330

Query: 214 GFQHSITGSSSGPSK-----------SFAADFGGKFVSEGGDFSVKGVLDR--------- 253
           G   S   +S+  S            +     G  F +    F V               
Sbjct: 331 GIDWSRLNNSASNSGFQFRQQLGAQTNGINATGNTFTTTANAFGVATNAGFVAGYLNPVS 390

Query: 254 --FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV---- 307
              +    ++ LE+  + + L+ P L  ++ Q+A        +Y TV S     SV    
Sbjct: 391 KIGNIAASINLLEQFGSTKVLSSPKLMVLNNQTAVLKVVDNLVYFTVQSQQSQGSVGGGI 450

Query: 308 --------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------EPVIGVNAGD-MPSY 351
                    T   GVV+  TP +     + + I+  VS       +P   +     +P  
Sbjct: 451 LSTVTTTPNTVPVGVVMSVTPQINDLSNVNINIRPTVSRVLGFKKDPNPNLTVESLVPEI 510

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           +VR+ ++ +++ SG T VL GL++DD+    + +P LSK+P +G +F        +TE+ 
Sbjct: 511 QVREMESMLQILSGNTAVLGGLMQDDVLTNTDKVPGLSKVPGVGKVFTGQNDANRKTELV 570

Query: 412 IAATPFLV 419
           I   P ++
Sbjct: 571 IFLRPTVI 578


>gi|302877484|ref|YP_003846048.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
 gi|302580273|gb|ADL54284.1| type II and III secretion system protein [Gallionella
           capsiferriformans ES-2]
          Length = 573

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 59/354 (16%), Positives = 107/354 (30%), Gaps = 63/354 (17%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL------NIAGEDQVT 197
            ++L G   +     R        +S         +   ++ N+        I+ E QV 
Sbjct: 222 RLILGGKDASDGKGARLPADRSLSVSPMSGVIVIRALPDEIRNVTAFLKASQISVERQVI 281

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------------------ 239
           L+  I +V+ +   Q G       +      S      G  +                  
Sbjct: 282 LEAKIIDVQLNDSFQSGVNWGAFKNGLNSFSSVGVGGAGSVLNPATAGVGATDISSAALS 341

Query: 240 ----------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     + G            SF  +L+ LE    +  L+ P ++ ++ Q A    
Sbjct: 342 ALPGASLLPNAAGTGSLFGLAFQTSSFALLLNFLESQGDVHVLSSPRISTLNNQKAVLKV 401

Query: 290 GGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           G    + T  S     +V                G+VL  TP +     I L +   +S 
Sbjct: 402 GTDEFFVTEISGGSQATVNVAGTAPTIKTQPFFSGIVLDVTPKIDENNEIILHVHPSISS 461

Query: 339 PVI---------GVNAGDMP--SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
                             +P  S  + + D+ V    G  + + GL++ D    + G+P 
Sbjct: 462 VTTVNKVLNLGATTGTYTLPMASSSISETDSIVRARDGQIVAIGGLMRQDSTNGESGLPG 521

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM--RDLSRPDDHYSVEDD 439
           LSK     ++F  +     + E+ I   P +V        D++R  D       
Sbjct: 522 LSK-----SIFGQTSKVSSKRELVILLKPTVVDSDRDWSDDIARSRDRVENLSR 570


>gi|58580480|ref|YP_199496.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84622438|ref|YP_449810.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
 gi|58425074|gb|AAW74111.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84366378|dbj|BAE67536.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           MAFF 311018]
          Length = 770

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV      Q G     
Sbjct: 448 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 506

Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             S +  + S A                    G       G+   +      +  +++HA
Sbjct: 507 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 566

Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316
           L+  T +R L  P++   +   A+             +   + S +  +SV   D GV+L
Sbjct: 567 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 626

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365
              P V   G + L I  EVS P                A        R+  T   + SG
Sbjct: 627 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 686

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            TI+LAGL+ D       GIP LSK+P++GALF +   N    E+ +  TP +V+    +
Sbjct: 687 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 744

Query: 426 DLSRPDDHY 434
           +     D Y
Sbjct: 745 EARNLTDEY 753


>gi|17548695|ref|NP_522035.1| putative general secretion pathway GSPD-related protein [Ralstonia
           solanacearum GMI1000]
 gi|17430943|emb|CAD17625.1| putative general secretion pathway gspd-related protein [Ralstonia
           solanacearum GMI1000]
          Length = 698

 Score =  149 bits (377), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 76/423 (17%), Positives = 147/423 (34%), Gaps = 55/423 (13%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
           + +K P   +   A + +    + +   I+  L+K +   +      V +      D   
Sbjct: 118 AASKQPINLDFRDASVRMIFEAMARSTGINFILDKDVRPDLK---TTVFIRQAKLEDALD 174

Query: 80  ----------VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
                      + +  T+ ++     +            ++    L   D       L+ 
Sbjct: 175 LILSTTQLNKKMMNGSTILIYPNTPEK-----QRDYQDLVVRAFYLTNADAKQTGAMLKA 229

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +   +  ++  ++ VV+        +S   V L+E  +    RN        +V+ + +
Sbjct: 230 MLKIRDPYIDERTNMVVIR-------ESPDVVRLAERLVELQDRNDSEVVLEVEVLEVSS 282

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
                               L Q+G Q+  + + +  S + A+                 
Sbjct: 283 ------------------TKLTQLGVQYPNSFTLTPLSATGASSLTLSDFKGLNS----D 320

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATS 306
            +   +   VL+          LA P + A + + A    G +    T +S++    + S
Sbjct: 321 RIGVSTPNVVLNLRRELGDTDLLANPKIRAKNHEKAKILIGDKLPVITTTSTSTGFVSES 380

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELP 363
           V   D G+ L   P++     + ++I  EVS     +   +         R A+T ++L 
Sbjct: 381 VQYIDVGLKLEVEPSISPDDEVSMKINLEVSSLTNQITTRSGTVAYQIGTRTANTVLKLH 440

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T +LAGL+K         IP L  IP+LG LF +   N    EI ++ TP +VKP  
Sbjct: 441 DGETQLLAGLIKTQQTSSAARIPGLGDIPLLGRLFSSQTDNGVRNEIVLSITPRVVKPSH 500

Query: 424 MRD 426
             D
Sbjct: 501 RPD 503


>gi|312171108|emb|CBX79367.1| Type III secretion system outer membrane pore HrcC [Erwinia
           amylovora ATCC BAA-2158]
          Length = 677

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 70/452 (15%), Positives = 132/452 (29%), Gaps = 54/452 (11%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVI 100
            G  + + +        +   D + V+       + AD  +H    M +     G A ++
Sbjct: 154 TGPPQYLELVKRFSEQREKKEDRRKVMTFPLRYASVADRTIHYRDQMVVI---PGVATML 210

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
                     N  +  +R        +       +    + +   +L  +    + S RA
Sbjct: 211 ----------NELMNGKRSAPASASGIESTPGGPDTNSMIQNTQTLLSRLSSHNKTSNRA 260

Query: 161 V-----------ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--VTLKVTIAEVRR 207
                        +S    + +   +  +    +   L+      Q  V +   I ++ R
Sbjct: 261 GGRDNEIEDVSGRISADVRNNALLIRDDDKRHDEYSQLIAKIDVPQNLVEIDAVILDIDR 320

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L ++      T        S  +  G  FVS           D   F   + ALE   
Sbjct: 321 TALNRLEANWQATLGGVTGGSSLMSGSGTLFVS-----------DFKRFFADIQALEGEG 369

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-G 326
               +A P++  +  Q A                     +     G  L  TP  +   G
Sbjct: 370 TASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADIQPVTAGTSLQVTPRAVGNEG 427

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
              +++  ++ +  +  N     +   R    T   +     +VL G   ++       I
Sbjct: 428 HSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISENRALVLGGFHVEESADRDRRI 487

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           PLL  IP LG LF + R    + +     TP L+            D+     DA     
Sbjct: 488 PLLGDIPWLGQLFSSKRHEISQRQRLFILTPRLIGDQTDPTRYVTADNRQQLSDA----M 543

Query: 446 NRVNKIYGP------KEASEVEGQNYKGAIGF 471
            RV + +         E +  +    +   GF
Sbjct: 544 GRVERRHSSVNQHDVVENALRDLAEGQSPAGF 575


>gi|88799604|ref|ZP_01115180.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
 gi|88777689|gb|EAR08888.1| Type II secretory pathway, component PulD [Reinekea sp. MED297]
          Length = 519

 Score =  149 bits (377), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 52/251 (20%), Positives = 97/251 (38%), Gaps = 26/251 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA---DFGGKFVSEGGDFSVKGV 250
            QV ++  I EV  D   + G   S    + G   + A    D      + G        
Sbjct: 251 KQVIIEAKIVEVTLDQEYRSGINWSFFNDNFGSGNNSAGIGLDGNAISGAGGVGGVFNLS 310

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---- 306
           L   +F ++L  L+    ++ L+ P ++ I+ Q A    G    + T+ S T   +    
Sbjct: 311 LSLDNFTSMLQLLDHQGDVQVLSSPRVSTINNQKAVIKVGTDEFFATIQSITTEVNDDDS 370

Query: 307 ----------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------ 350
                     +     G+ L  TP +     + L ++  V+E V      D+        
Sbjct: 371 DSVTTVPAFELEQFFSGIALDVTPQIADDDSVTLHVRPTVTEVVEDTKTLDVGGRSYQLP 430

Query: 351 ---YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
                +R++D+ +   SG  +V+ GLL+        G+P    IP++  LF   R ++++
Sbjct: 431 LAYSNIRESDSIIRAQSGQIVVIGGLLQQKQDLGTTGLPWFQTIPVIRGLFAQDRESQQK 490

Query: 408 TEIFIAATPFL 418
           +E+ I   P +
Sbjct: 491 SELVILLKPTV 501


>gi|188578583|ref|YP_001915512.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523035|gb|ACD60980.1| general secretion pathway protein D [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 766

 Score =  149 bits (376), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 73/309 (23%), Positives = 116/309 (37%), Gaps = 37/309 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              ++ET          A SS + V+  L++    QV ++  +AEV      Q G     
Sbjct: 444 VSAVAETNTLLVRSTPQAWSSIRDVIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYF 502

Query: 220 TGSSSGPSKSFAADF-----------------GGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             S +  + S A                    G       G+   +      +  +++HA
Sbjct: 503 ENSVNAAADSAANSTGIGAGAGLASAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHA 562

Query: 263 LERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVVL 316
           L+  T +R L  P++   +   A+             +   + S +  +SV   D GV+L
Sbjct: 563 LDEVTNVRLLQTPSVFVRNNAEATLNVGSRIAINSTSINTGLGSDSSFSSVQYIDTGVIL 622

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPSYRVRKADTTVELPSG 365
              P V   G + L I  EVS P                A        R+  T   + SG
Sbjct: 623 KVRPRVTKDGMVFLDIVQEVSSPGDRPAACTSATATVNAAACNVDINTRRVKTEAAVQSG 682

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            TI+LAGL+ D       GIP LSK+P++GALF +   N    E+ +  TP +V+    +
Sbjct: 683 DTIMLAGLIDDTTSDGSNGIPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQ 740

Query: 426 DLSRPDDHY 434
           +     D Y
Sbjct: 741 EARNLTDEY 749


>gi|90424504|ref|YP_532874.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
 gi|90106518|gb|ABD88555.1| type II and III secretion system protein [Rhodopseudomonas
           palustris BisB18]
          Length = 774

 Score =  149 bits (376), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 66/252 (26%), Positives = 111/252 (44%), Gaps = 26/252 (10%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGVL 251
           QV +  TIAEV      Q G Q  +T    G      S         +S   D  +   +
Sbjct: 489 QVAIDATIAEVTLTDDLQFGVQTYLTSRDFGMPADRGSLGTASSSALISAASDVVLNRAI 548

Query: 252 DRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---- 299
             F+F        + +L+AL   T ++ L+ P+L  I  Q A+   G +   +T S    
Sbjct: 549 PGFNFLVGSGSSPKAILNALHAITEVKVLSNPSLVVIDNQVATLQVGDEIPIQTGSATVL 608

Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------- 348
             S+T A +      G++L   P + + G + L I+ E+S PV   +             
Sbjct: 609 SSSNTIANTTDYRRTGILLQVVPRINANGNVRLEIEQEISNPVASSSTSSSSSTSTNSLT 668

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P+   RK  ++V + SG T++LAGL+ D   + + GIP L ++P +G +F  +    + T
Sbjct: 669 PTVSTRKVKSSVAVASGQTVLLAGLISDTQNKTRSGIPGLDQLPGVGDVFSQTEKIMKRT 728

Query: 409 EIFIAATPFLVK 420
           E+ I   P +++
Sbjct: 729 ELIIFIRPQIIR 740


>gi|91762809|ref|ZP_01264774.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718611|gb|EAS85261.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1002]
          Length = 518

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +  E + T        +       KV+  ++   + QV ++  I E      + +G +  
Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294

Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248
                     G + G S   AA   G  +S                            + 
Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGTGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   +  L  LE     +T++ P L  +  Q AS   G                  
Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D  + L  TP ++  G + L    +V+                 + +T + +  G  +
Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+ G+ K+++   ++G+P  SK+PILG +      +    E+ +   P ++
Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518


>gi|15606033|ref|NP_213410.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
 gi|2983222|gb|AAC06820.1| hypothetical protein aq_585 [Aquifex aeolicus VF5]
          Length = 705

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 14/238 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
           + ++  + EV + +L+++G       S            A         + G  +     
Sbjct: 465 IKIRAKLVEVEKSLLRELGISWRTVFSKAYIPEFWQGETAFRTVTPGQPQSGLLTFTFQR 524

Query: 252 DRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +R +  E  L A E+    + +AE  +  ++G+ A  +SG +     VS S G  +V   
Sbjct: 525 NRLNLLEFKLLAYEQEGRAKNVAESYVITVNGEPAVISSGLEFPVTEVSLSGGIANVEPK 584

Query: 311 D--YGVVLHFTPTVLSPGRIGLRIQT------EVSEPVIGVN-AGDMPSYRVRKADTTVE 361
                +VL  TP VL  G I L +         V E  +       +P +   + D  + 
Sbjct: 585 YESIPIVLITTPVVLPDGNILLSVYLARRQINSVQEFPVTQTLTQKIPVFSTSRIDVKIP 644

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +G T+V+ G ++      + G+P L ++P+LG LF+       + E+ I  TP ++
Sbjct: 645 IKNGETVVIGGAVEKSDSITESGVPKLREVPLLGWLFKTQTKQLRDRELLIFITPEII 702


>gi|171060101|ref|YP_001792450.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
 gi|170777546|gb|ACB35685.1| general secretion pathway protein D [Leptothrix cholodnii SP-6]
          Length = 753

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 60/281 (21%), Positives = 108/281 (38%), Gaps = 31/281 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI------------------TGSSS 224
            V++ L+     QV ++  I ++      + GFQ                     TG ++
Sbjct: 398 GVIDQLDAR-RAQVYVESMIVKMDATQAAEFGFQWQGLLGQSGDRYGLVAGTNFGTGGNN 456

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQ 283
             + S  A  G      G +  +   ++  ++   +   LE  T    L+ P L A+  +
Sbjct: 457 IVNLSVGAATGAALPGAGLNVGLLKAINGVYTLGALARFLESNTGANVLSTPNLIALDNE 516

Query: 284 SASFTSGGQHLYKTVSSSTGAT---------SVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            A    G    + T S +   T         ++   D G+ L   P +   G + + I  
Sbjct: 517 EAKIVIGQNVPFVTGSFTNTGTSNGSANPFQTIERKDVGLTLRVKPQIGEGGTVRMVIYQ 576

Query: 335 EVSEPVIGVNAGDM-PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E S  V         P+      +TTV +  G  +VL GLLKDD    ++ +P L+ IP+
Sbjct: 577 ENSSVVANTTTNSAGPTTDKSAIETTVVVDDGSIMVLGGLLKDDYGSGEDRVPGLASIPL 636

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           +G LFR+    R ++ + +   P +++       +   D Y
Sbjct: 637 IGGLFRSENRKRTKSNLLVFLRPVVMR-SQQDANALTLDRY 676


>gi|193062144|ref|ZP_03043240.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194426396|ref|ZP_03058951.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|260845704|ref|YP_003223482.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|260858255|ref|YP_003232146.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|13447709|gb|AAK26708.1|AF200363_16 EscC [Escherichia coli]
 gi|18034513|gb|AAL57535.1|AF453441_19 EscC [Escherichia coli]
 gi|17384643|emb|CAC81855.1| EscC protein [Escherichia coli]
 gi|57434464|emb|CAI43881.1| EscC protein [Escherichia coli]
 gi|192932364|gb|EDV84962.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E22]
 gi|194415704|gb|EDX31971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli B171]
 gi|195183205|dbj|BAG66750.1| T3SS structure protein EscC [Escherichia coli O111:H-]
 gi|254692333|emb|CAR47974.1| EscC protein [Escherichia coli]
 gi|254692401|emb|CAR48044.1| EscC protein [Escherichia coli]
 gi|257756904|dbj|BAI28406.1| T3SS structure protein EscC [Escherichia coli O26:H11 str. 11368]
 gi|257760851|dbj|BAI32348.1| T3SS structure protein EscC [Escherichia coli O103:H2 str. 12009]
 gi|323163017|gb|EFZ48850.1| hypothetical protein ECE128010_0613 [Escherichia coli E128010]
          Length = 512

 Score =  149 bits (376), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   S +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|83647801|ref|YP_436236.1| type II secretory pathway subunit PulD [Hahella chejuensis KCTC
           2396]
 gi|83635844|gb|ABC31811.1| Type II secretory pathway, component PulD [Hahella chejuensis KCTC
           2396]
          Length = 615

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            +QV + V+I  V    LK++G          G       D      ++     + G   
Sbjct: 285 SEQVEVNVSIISVSATNLKELGVSWQARDQKLGEFGYGGIDKQNPAPNKNQLAILGGADA 344

Query: 253 RFS---------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            FS         F   ++AL      + ++ P++       A          +       
Sbjct: 345 TFSTVLDSGLDYFIAKVNALVEDGDAQVVSRPSVVTSEHLEAVLDDSTTFHVRV--QGNE 402

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGR---IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     G VL  TP +        I L +  E      G     +P  +    +T  
Sbjct: 403 QVDLFPVTVGSVLRVTPHIQRGEEQKGINLEVTIE-DGQQTGEEVDRIPVIKTSSINTQT 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++ G  +D   +   G+PLL  IP+LGALFR +  NR++       TP ++ 
Sbjct: 462 VVGLGQSLLIGGFFQDYESESVGGVPLLKDIPLLGALFRTTNHNRKKMVKLFLMTPKIID 521

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGF 471
                    P    +         +    ++    +   V  + Y  + GF
Sbjct: 522 --------VPTGGLA---SNGRKIYGYAFQVGSSNKDGAVAIREYFDSRGF 561


>gi|71082769|ref|YP_265488.1| type II secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
 gi|71061882|gb|AAZ20885.1| Type II Secretion PilQ [Candidatus Pelagibacter ubique HTCC1062]
          Length = 518

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 94/291 (32%), Gaps = 38/291 (13%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +  E + T        +       KV+  ++   + QV ++  I E      + +G +  
Sbjct: 236 QVTEEATTRSIIVRGKEKDLDIVDKVIREIDKRTK-QVLIEAFIVEATSTFEQSLGKRLG 294

Query: 219 I--------TGSSSGPSKSFAADFGGKFVS----------------------EGGDFSVK 248
                     G + G S   AA   G  +S                            + 
Sbjct: 295 AAYTRKSLRMGGTQGGSSVGAASGSGAALSDSTGAFTSGAGTDNLVNFGSAAATSGIGIL 354

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                   +  L  LE     +T++ P L  +  Q AS   G                  
Sbjct: 355 KKTGSAVLKLELDFLEAQGLSKTVSNPKLFTLDNQQASINQGETIYIDGGEGED-----K 409

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D  + L  TP ++  G + L    +V+                 + +T + +  G  +
Sbjct: 410 PVDASLKLIVTPNIIGDGNVML--SIQVNNDTPNRANAASVGVNKMEINTKLLVADGDIV 467

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V+ G+ K+++   ++G+P  SK+PILG +      +    E+ +   P ++
Sbjct: 468 VIGGIKKNNVANNRQGVPGTSKVPILGKVLSGKSNSDTMNELLVFIAPRIL 518


>gi|312958833|ref|ZP_07773352.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
 gi|311286603|gb|EFQ65165.1| type III secretion system rscC [Pseudomonas fluorescens WH6]
          Length = 713

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 92/307 (29%), Gaps = 23/307 (7%)

Query: 139 EMVSDTVVLHGMVRTIQD-----SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
                  V  GM  T +        R                   +  +++++ L++A +
Sbjct: 272 TNAGTAPVDTGMAITPRAQVNTSRIRVEADVRNNAVLIYDVPERQAMYRELISQLDVARK 331

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V +   I ++ R  L + G +     S      + A     +            +  R
Sbjct: 332 L-VEIDAIILDIERTQLHEFGIKWGFQNSRFRGGVNMAPGTSSQL----------SIEHR 380

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + ALE       ++ P++  +  Q A               +     +T    G
Sbjct: 381 DRFYADVRALESRGLATMVSNPSVLTLENQPAVIDFNRTQYLTAGRENATILPIT---VG 437

Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
                 P V+      +I L +  E             P  R  K  T   +    ++V+
Sbjct: 438 TSFQVVPRVITSRGGHQIHLAVDIEDGNFDESNPDRLGPDVRRGKVSTQAVMAEKRSLVV 497

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
            G    +    +  +PLL  IP+LG ALF ++       E     TP ++   +      
Sbjct: 498 GGFHVTESSDKQRKVPLLGDIPLLGKALFSSTERQNNRRERLFILTPRVIGDQSDPSRYL 557

Query: 430 PDDHYSV 436
           P D    
Sbjct: 558 PADDQVE 564


>gi|110835094|ref|YP_693953.1| fimbrial assembly protein pilQ [Alcanivorax borkumensis SK2]
 gi|110648205|emb|CAL17681.1| Fimbrial assembly protein pilQ precursor [Alcanivorax borkumensis
           SK2]
          Length = 723

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 46/202 (22%), Positives = 79/202 (39%), Gaps = 5/202 (2%)

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                +        D G    S          L     E  L ALE       +A P + 
Sbjct: 521 FQFQEAENDDDLIVDLGVDSASASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVL 580

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
               Q A   + GQ +   +++S+GATS+   +  + L  TP +   G I + ++     
Sbjct: 581 TADQQPA-VIASGQQVPFEIATSSGATSIDFVEAELRLEVTPHITPDGNIIMMLKVNNDS 639

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                ++    +    + +T+V +  G T+VL G+ + +        P L  +P +GALF
Sbjct: 640 F----SSDGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGALF 695

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R +     + E+ I  TP L+K
Sbjct: 696 RKTVNRDNKQELLIFITPRLMK 717


>gi|293603728|ref|ZP_06686147.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
 gi|292817902|gb|EFF76964.1| type II secretion system protein D [Achromobacter piechaudii ATCC
           43553]
          Length = 611

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/456 (17%), Positives = 159/456 (34%), Gaps = 50/456 (10%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV-QDVLVSDPTK----- 76
             + P      A  I      I     +   L+  +   +P  +      ++        
Sbjct: 176 ALRKPVSLNFKAQPIVQILDTISLAAGVDFVLDPDVQTSMPASIMARQTTAEDAINLLLR 235

Query: 77  ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD-ILIERDIAHLEMTLRRFIA 132
               +  V    T+ ++     +        + ++++     L   D  H+   LR+  A
Sbjct: 236 TNQLEKKVLDAHTLLIYPSRPDK------DKEYRELMVRVFYLNHADATHVLAALRQISA 289

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
             N+ ++  ++ V++                               +  ++V+  L+IA 
Sbjct: 290 PKNVHLDERANAVLVRDT------------------------PEVMAVVERVVAALDIAQ 325

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            + VT+ V + EV  +   ++G  +      S   +          +  G +    GV  
Sbjct: 326 SE-VTMDVQVLEVNANDELEVGVDYPSDLRFSVLPQGENGRITVGDL-LGLNQGKIGVTS 383

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTH 310
           R      L+ L++    + LA P +   + + AS   G +    T +++ G    SV   
Sbjct: 384 RNDLSAALNLLQKRGKTKVLANPKIRVRNMEKASIKIGEKVPVVTTTNANGVVTESVNYQ 443

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGVNAGDMPSYRVRKADTTVELPSGGT 367
           D G++L   P +     + +++  EVS     V     G +     R A+T +    G T
Sbjct: 444 DVGLILQVEPRISLSNEVSVKVSMEVSNLKGEVKTAGGGVVYPMSTRNAETVMTARDGET 503

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            VLAGL+     +   G+P LS +  LG+LF   +   + TEI +  TP + + +A   L
Sbjct: 504 QVLAGLVNQQQTRSSSGVPGLSVMGWLGSLFGGQKKTDQNTEIVLLLTPHIERSMA---L 560

Query: 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
               D Y           + +     P   +E +  
Sbjct: 561 PSAADSYFPSGTESRVTVSPMTTQAPPAATTEADIP 596


>gi|323143301|ref|ZP_08077992.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
 gi|322416918|gb|EFY07561.1| type III secretion outer membrane pore, YscC/HrcC family
           [Succinatimonas hippei YIT 12066]
          Length = 610

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-----TGSSSGPSKSFAADFGG 236
           + V+  L++     V L   I +V       +G              +G      ++ G 
Sbjct: 297 EDVIKELDVPVRL-VELHAAIVDVDVGAADSLGIDWQAARRTGNWQIAGGVGHQISNSGS 355

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
              + GG FS     D+ +F   ++ LE     RTL  P++  +    A+      +  K
Sbjct: 356 LNPNGGGIFSTVFSTDQSAFMMQVNMLEEDNKARTLGRPSVLTLDNVEATLEDTTTNYVK 415

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---------IGLRIQTEVSEPVIGVNAGD 347
                  ++ +     G +L  TP ++             I L+   +  +      + D
Sbjct: 416 VA--GNESSDLFEVVSGTILRVTPHIIDSHDGSAPYIQMVISLQTNQDTDQSQSYTVSSD 473

Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                  +P  +    +T   +  G +++L G   ++ +    GIP+L  IP++G LF +
Sbjct: 474 AQGADERIPVIKKTTINTQALVQQGQSLLLGGYYMENHRNSDNGIPVLKDIPLIGGLFGS 533

Query: 401 SRFNREETEIFIAATPFLVK 420
           S     + E  +  TP ++ 
Sbjct: 534 SSDEATQRERLLLITPRILD 553


>gi|294056469|ref|YP_003550127.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615802|gb|ADE55957.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 452

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 26/282 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           GMV    +S + +                 +  K ++  L+     Q+ ++  I E+   
Sbjct: 102 GMVAASVESDQII---------VSDRSSNIALLKSIIQRLDKPVP-QILVEARIVELNIS 151

Query: 209 ILKQIGFQHSITGSSSGPSKSFAA---------DFGGKFVSEGGDFSVKGV---LDRFSF 256
              +          ++ P     A         + GG   + G    +          SF
Sbjct: 152 SDLEREVDLYYQNIATDPLTGQLAIVDEIGSKLNVGGATPNTGQGGILNSQVWDNGGESF 211

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--YKTVSSSTGATSVTTHDYGV 314
              +  LE +   + L+ P L    G+  S  +G +     +T SS    TS      G+
Sbjct: 212 NAFVRYLESSGKAKILSAPNLIIQRGKEGSIVTGEEVPILSQTTSSGGVTTSTEFKSVGI 271

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            L   PT+++  R+ L +  EVS  +  I       P   VR+A T +E+  G  I +AG
Sbjct: 272 KLSVKPTMIAGTRVRLEVNPEVSTVIDYIEAGGVSNPIIAVRQARTELEVNDGQLISMAG 331

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           LL+   +  +   P+LS+IPILGALF++ R    +T++ I  
Sbjct: 332 LLQSTERDTERRTPILSQIPILGALFKSDREQSSQTQLIIFL 373


>gi|226326440|ref|ZP_03801958.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
 gi|225205223|gb|EEG87577.1| hypothetical protein PROPEN_00288 [Proteus penneri ATCC 35198]
          Length = 601

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 39/237 (16%), Positives = 78/237 (32%), Gaps = 21/237 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L + I ++ ++    +G       SS   S  F                      
Sbjct: 120 KRQVELSLWIIDISKNKADSLGIDWQAGYSSGNHSFFFNTSSLSAA-------------S 166

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   + AL      + ++ P L       A F +      +         ++ +  +
Sbjct: 167 GLNFLGKIRALTEDGDAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVATLESTTF 224

Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEVSEP-VIGVNAGDMPSYRVRKADTTVELPSGG 366
           G ++   P + +  +     I L    E  +          +P        T   +  GG
Sbjct: 225 GTMMSVLPRIGNSNKEIEMIINLEDGAEKKDDKAKDETVESLPVINRTNISTVARVSEGG 284

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
           ++++ G  ++D    +  IP+LS IP++G LF     N ++        P L+    
Sbjct: 285 SLLIGGYTREDNINAETKIPVLSSIPLIGGLFSYKSDNNKKMVRIFMLQPRLLDNTE 341


>gi|292487037|ref|YP_003529907.1| type III secretion system outer membrane pore HrcC [Erwinia
           amylovora CFBP1430]
 gi|292900578|ref|YP_003539947.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|1336093|gb|AAB49179.1| HrcC [Erwinia amylovora]
 gi|291200426|emb|CBJ47554.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291552454|emb|CBA19499.1| Type III secretion system outer membrane pore HrcC [Erwinia
           amylovora CFBP1430]
          Length = 676

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 72/481 (14%), Positives = 138/481 (28%), Gaps = 58/481 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + + +        +   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
              + AD  +H      +     G A ++          N  +  +R        +    
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATML----------NELMNGKRAAPASASGIDSTP 230

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAV-----------ELSETFLSQSGRNQYANSS 180
              +    M +   +L  +    + S RA             +S    + +   +  +  
Sbjct: 231 GGPDTNSMMQNTQTLLSRLSSRNKTSNRAGGRDNEIEDVSGRISADVRNNALLIRDDDKR 290

Query: 181 SKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
             +   L+      Q  V +   I ++ R  L ++      T        S  +  G  F
Sbjct: 291 HDEYSQLIAKIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLF 350

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           VS           D   F   + ALE       +A P++  +  Q A             
Sbjct: 351 VS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT 399

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KA 356
                   +     G  L  TP  +   G   +++  ++ +  +  N     +   R   
Sbjct: 400 --GERVADIQPVTAGTSLQVTPRAVGNEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTV 457

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   +     +VL G   ++       IPLL  IP LG LF + R    + +     TP
Sbjct: 458 STQALISENRALVLGGFHVEESADRDRRIPLLGDIPWLGQLFSSKRHEISQRQRLFILTP 517

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIG 470
            L+            D+     DA      RV + +         E +  +    +   G
Sbjct: 518 RLIGDQTDPTRYVTADNRQQLSDA----MGRVERRHSSVNQHDVVENALRDLAEGQSPAG 573

Query: 471 F 471
           F
Sbjct: 574 F 574


>gi|257092259|ref|YP_003165900.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044783|gb|ACV33971.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 624

 Score =  149 bits (375), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 118/353 (33%), Gaps = 41/353 (11%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVR 206
            V      + A  +           +  +   +KV   ++ +  +   QV ++ TI EV 
Sbjct: 274 TVVKRMTYREAASVIANPEGGVITVRATSRQHEKVQEFLDRVMSSARRQVLIEATIVEVT 333

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                Q G Q +   S +  S +          +          ++  S    +  L   
Sbjct: 334 LSDGYQQGIQWNRLTSGTEYSVTKPTLTTNVQNAVTPYVIKYSNINPASLLATVELLRLF 393

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---------------------GAT 305
             ++ L+ P L  ++ Q+A+       +Y +V                           T
Sbjct: 394 GTVKVLSSPKLAVLNNQTATLRVSEDFVYFSVKQDAASAVGVVVGGAAAASGPVSNPTTT 453

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP---------------VIGVNAGDMPS 350
           +  +   G  +  T  +   G + L ++  +S                         +P 
Sbjct: 454 TPQSVSIGFFMSLTAQISDSGTVTLNVRPSISFIADLKQDPNPGLVNPKTGNTIPNLVPQ 513

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R R+ ++ + + SG   VL GL++D I      +P L  IP +G +F N   +  ++E+
Sbjct: 514 IRTREIESMLRVESGDIAVLGGLMEDRIGNTVGRLPGLGDIPFVGEVFNNRGNSSSKSEL 573

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            +   P +++  ++         +  + D   F  ++V + +   + +    Q
Sbjct: 574 VVLLRPTVIRDASIDGDFSSFREFLPKKD--FFRTDQVYRPFSLPDQTPEPLQ 624


>gi|162454464|ref|YP_001616831.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
 gi|161165046|emb|CAN96351.1| type 4 fimbrial biogenesis protein PilQ [Sorangium cellulosum 'So
           ce 56']
          Length = 774

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 106/296 (35%), Gaps = 44/296 (14%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
            T +  +       +  ++++  L+     QV ++  + E     ++ IG Q    G+ S
Sbjct: 474 RTNVLIARDVAGNLNQIEELVRSLDTQTP-QVLIEARVVEATSRYVRDIGIQWGGDGTFS 532

Query: 225 GPSKSFAA----------------------------------------DFGGKFVSEGGD 244
             + +                                              G        
Sbjct: 533 AATGNPTGLVFPSAIGIAGGATDSNSPTGGLSPFSSQVSNPNFAVNLPAIVGAGQGGALG 592

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           F++  + +  +    L A E +  +R ++ P +  +  + A  + G    +  +S+    
Sbjct: 593 FTLGSINNTVNLGVRLSAAEASGMLRVVSSPRILTLDNREARISQGTLIPFSQISAQGVQ 652

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTVELP 363
           T  T  +  + L   P V S G + + ++    EP     +A   P+   R+A+T + + 
Sbjct: 653 T--TFQEAKLQLLVKPHVTSDGSVAMHVKINRDEPDFNQTSARGDPTILKREAETDLLIM 710

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T V+ G+   +  +  + +P    IP+LG LF+  R +    E+ I  TP +V
Sbjct: 711 DGHTAVIGGIFTRNTGRNLDQVPFFGDIPVLGLLFQRRRASDTRNELVIFLTPRIV 766


>gi|237653194|ref|YP_002889508.1| general secretion pathway protein D [Thauera sp. MZ1T]
 gi|237624441|gb|ACR01131.1| general secretion pathway protein D [Thauera sp. MZ1T]
          Length = 728

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 59/358 (16%), Positives = 116/358 (32%), Gaps = 45/358 (12%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G + +          +               + + V++ L+     QV ++  IAE+  
Sbjct: 362 AGGLSSATRGGMVQPDAVNNALIITAPDAVYRNLRAVIDQLD-RRRAQVYIEALIAEIST 420

Query: 208 DILKQIGFQH-------------------------SITGSSSGPSKSFAADFGGKFVSEG 242
           +   + GFQ                           +   S+  ++    + G   V  G
Sbjct: 421 ERAAEFGFQWVAGASAGEVGVLGAQLFNSGGGNLGQLIAGSADRTRLTLPNNGLNLVVGG 480

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G  +V G+ +  S   +   LE   +   L+ P L  +  + A    G    + T   + 
Sbjct: 481 GKVNVPGIGEVLSLGVLARFLENEVSANILSTPNLITLDNEEARIVVGRNLPFVTGQYAN 540

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSY 351
                       ++   D G+ LH  P +   G I L+I  E S  V    +        
Sbjct: 541 TGGGTTPANPFQTIERRDVGLTLHVKPQISEGGAIRLQIYQEASAVVGSAESAAAGNSVT 600

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  ++ V +  G  + L GL++D     +E +P+L  +P  G+LFR     R +T + 
Sbjct: 601 TKRSIESMVLVDDGAILALGGLVEDSYSGGEEKVPVLGDLPFAGSLFRYDTRKRAKTNLV 660

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
           +   P +++       +   D          +   R +++                 +
Sbjct: 661 VFLRPVILR--DRESYAALTDSRYD------YVIGRRDQLPSGANLLRDPPPGEPAPV 710


>gi|242310207|ref|ZP_04809362.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
 gi|239523504|gb|EEQ63370.1| conserved hypothetical protein [Helicobacter pullorum MIT 98-5489]
          Length = 502

 Score =  148 bits (374), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 49/295 (16%), Positives = 101/295 (34%), Gaps = 34/295 (11%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-------- 219
           L     ++      +  +  L+   + QV + V I  +        G             
Sbjct: 198 LVSVRGDKEGLERVEAYIQKLHQRLQQQVLIDVHILSITHTHSDTTGINWDGLYNIQNIM 257

Query: 220 -----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIR 270
                 G+S G         G   V + G  +++  ++      S   ++  L+    + 
Sbjct: 258 IPTFSEGASFGGGGEVGNVSGINIVGQNGSNALQYGINIFSQGLSLNRIIEFLKTYGKVE 317

Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +++ P +  ++ Q A  + G           Q+     + +       +   GV+L  TP
Sbjct: 318 SISNPKVLTLNNQPAMISVGDILRYQKSSIYQNTNAQTTLTNTDNEYPSIFAGVLLDITP 377

Query: 321 TVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            +     I L+I   +++                P+    +  + V + +   IVL GL+
Sbjct: 378 VIFGD-EIMLKINPSITKTKENRTEIPATAFESPPNLTTNQLSSIVSVKNNQKIVLGGLI 436

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
             +I  ++  IP+L  IP++  LF  S+      EI     P ++      +LS 
Sbjct: 437 SKNISSIENKIPVLGSIPLIKPLFSYSQDIERTEEIVFIIEPKIISQEIQENLSL 491


>gi|171462916|ref|YP_001797029.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192454|gb|ACB43415.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 209

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 37/206 (17%), Positives = 82/206 (39%), Gaps = 4/206 (1%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S T      +          F       ++         +  L ALE     + L+ 
Sbjct: 6   TMMSYTWQKLVGNLDLGGPGLSSFNPATVAATLVSRNASRILQAELSALESEGQGKILSN 65

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           P +       A+   G +  Y+T + +   + +      + L   P +   G+I +    
Sbjct: 66  PRIMTGDQVKATIELGTELPYQTSNQNG--SKLQFRKANLRLEALPKIHPDGKISML--V 121

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            +++  +G+      +   +   + V + +GGT ++ G+L+   ++ +  IPLL  IP++
Sbjct: 122 GINKDTVGMKTEQGYAIDTKSLSSEVTVENGGTAIIGGILQTTEREDEVKIPLLGDIPLI 181

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G  FR+    +++TE+ +  TP ++ 
Sbjct: 182 GHFFRHKSKLQDKTELLVFLTPTVLD 207


>gi|254428336|ref|ZP_05042043.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
 gi|196194505|gb|EDX89464.1| type IV pilus secretin PilQ subfamily, putative [Alcanivorax sp.
           DG881]
          Length = 693

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 45/195 (23%), Positives = 77/195 (39%), Gaps = 5/195 (2%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
                  D G    +          L     E  L ALE       +A P +     Q A
Sbjct: 498 NDDDLIVDLGVDSANASRFAVGFTSLASGLIELELSALEAEGHGELVATPKVLTADQQPA 557

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
              + GQ +   V++S+GATS+   +  + L  TP +   G I + ++          ++
Sbjct: 558 -VIASGQQVPFEVATSSGATSIDFVEAELRLEVTPHITPDGNIIMTLKVNNDSF----SS 612

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
               +    + +T+V +  G T+VL G+ + +        P L  +P +G LFR +    
Sbjct: 613 DGSAAINTNRVETSVLVNDGETVVLGGIFQQEKINSVTKTPFLGDLPWIGNLFRKTVNRD 672

Query: 406 EETEIFIAATPFLVK 420
            + E+ I  TP L+K
Sbjct: 673 NKQELLIFITPRLMK 687



 Score = 38.2 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/169 (10%), Positives = 54/169 (31%), Gaps = 3/169 (1%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + VG   ++    +      L++  ++ I  L     ++I  +      +   +   G  
Sbjct: 308 RQVGNVLLVAPADEIAAREQLELESQKKIEALAPLRTQYININYANASELKGLIANAGGK 367

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                S R   + +   +            +  ++++ L++    QV ++  +     D+
Sbjct: 368 GEALVSSRGSVVVDQRTNTLIVQDTQAKLEEIRELIDQLDVP-VQQVLIEARVVVATNDV 426

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
             + G +    G ++         +G     +      +  +D  +F  
Sbjct: 427 TDEFGVRWGGLGFNAESMLQDQRTYGVSGRLQSLRNLHQTNIDGAAFAA 475


>gi|301166568|emb|CBW26144.1| putative general secretion pathway protein D [Bacteriovorax marinus
           SJ]
          Length = 765

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/381 (17%), Positives = 121/381 (31%), Gaps = 59/381 (15%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS---NIRVEMVSDTV------VLHG 149
           +I        +   +    + +  L   L   + +S    I V  ++          L  
Sbjct: 284 LIAEPRTNSIIAMTNAEGAKQLNALIKKLDVKLVNSSSGQIHVYYLNHGTSETLAKTLSS 343

Query: 150 MVRTIQDSQ----RAVELSETFLSQSGRNQYANSSSKKVMNLLNI--------------- 190
           +V + Q       R   ++    S S  N     ++ K  N + +               
Sbjct: 344 LVTSAQPKTSTRSRLSRVASNDDSTSLFNAEVKITADKENNAIVVTASPTDYLTIKEVIK 403

Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                 DQV ++  I E      K  G        S    K+     G    +   +   
Sbjct: 404 KLDRPRDQVFVEGMIMETSVTKDKGFGINIIGAYGSGATDKAGFVGNGTDLFNVMSNNIT 463

Query: 248 KGVLDRF--------------------SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                                      S   ++ A+        LA P + A+  + A F
Sbjct: 464 ALGGLFVGGGTGSSVTQTVSGQEVKIKSVSGLITAIASNAGTNVLATPQIMALDNEEAVF 523

Query: 288 TSGGQHLYK---TVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGV 343
             G           ++ + + S+      + L  TP V    R I L+I  ++ +     
Sbjct: 524 EVGESIPTPERTNAANGSSSVSIKQQKVAMTLKITPQVNKVTRFIKLKIDQKIDDFSSRS 583

Query: 344 NAGDMPS----YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
               + S       R A T+V +    TI + GL++D    +   +PLL  IP+LG LF+
Sbjct: 584 LPSGVQSDGVATTTRSAVTSVVVRDRDTIAMGGLMRDKETDVTSKVPLLGDIPVLGWLFK 643

Query: 400 NSRFNREETEIFIAATPFLVK 420
           N+R + E+  +    TP ++ 
Sbjct: 644 NTRKSVEKLNLLFFLTPKIID 664


>gi|42524677|ref|NP_970057.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
 gi|39576887|emb|CAE78116.1| flp pilus assembly protein [Bdellovibrio bacteriovorus HD100]
          Length = 433

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 78/414 (18%), Positives = 141/414 (34%), Gaps = 39/414 (9%)

Query: 46  KGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD 105
               + +GL +   + +      V + D           R + L G+  G   V +    
Sbjct: 17  SQTALVLGLGEQKTVPLQGQ-DRVWIQDREILTAEGQGGR-LLLVGRREGFTTVKV---- 70

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G  + ++ +L        +           +   +    +++ G +  +QD     +   
Sbjct: 71  GAVLYSVQVLHPSKKDSFQDLTTYLKTRVGLHASLKEGDLLIEGQLYRLQDWIHLADHMR 130

Query: 166 T-----FLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQ------- 212
           T      +           + +   NL   A    Q  +     EVR     Q       
Sbjct: 131 TKNLNYQMRARMTASLQQLAQEHFSNLFYKAHLPPQTLIFEPALEVRVSGTDQTFRKYSR 190

Query: 213 ----IGFQHSITGSSSGPSKSFAADFGG--------------KFVSEGGDFSVKGVLDRF 254
                G       +S   + +                                 GV +R 
Sbjct: 191 LLMPFGVSLLKDETSLDIAPTIKVQITVAEIKKDFSLKYGLRPPAGYSAKLMPDGVWERD 250

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
                L ALE     + LA P +   SG+ A F +GG+   K ++       +    YG+
Sbjct: 251 ELPFNLTALEAQGQGKILASPNILCRSGKEAEFLAGGEFPIKIMNY--KMQDIVWKRYGI 308

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L   P   + GR+ + I+TEVS         D+P     +  +  +L    TI L+GLL
Sbjct: 309 LLRVKPKADAAGRMSISIETEVSTVDDSRKVDDVPGILTNRVSSHFDLTRPQTIALSGLL 368

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           K +  +  EG+PLLS++P++GALF +  F    +E+ I   P +++      + 
Sbjct: 369 KSEDGKSSEGLPLLSRLPVVGALFASKDFKENRSELVIFVRPSILREGEENPMP 422


>gi|319956469|ref|YP_004167732.1| pilus (msha type) biogenesis protein mshl [Nitratifractor
           salsuginis DSM 16511]
 gi|319418873|gb|ADV45983.1| pilus (MSHA type) biogenesis protein MshL [Nitratifractor
           salsuginis DSM 16511]
          Length = 511

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/379 (15%), Positives = 126/379 (33%), Gaps = 48/379 (12%)

Query: 88  YLFGKNVGQANVILIGHDGK-------------QMLNLDILIERDIAHLEMTLRRFI--- 131
           Y+ G+  G +N  +    G               +        +  + ++  +   +   
Sbjct: 119 YVTGQRKGTSNANVQVAGGNSNIDSNDKTPGGSTISIETNQEFQFWSTVKNEIHHILNTA 178

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLN 189
            D ++    V D  +  G      +      +             A       + +  L 
Sbjct: 179 GDGSVHFTKVGDEWI--GPDGQKWEYNPLEPVVNPEAGMITVTGTARQVERVSRYLAALT 236

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
              + +V + V I +VR +     G   +   ++S              V+         
Sbjct: 237 HQLKTEVMIDVRIIDVRINNNHSYGIDWNKIFNTSIRFTGDVTHGTTNSVTHNVSLKDGS 296

Query: 250 VLD------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            +                   VL  L+    +  ++ P +  ++ Q A  + G +  YK 
Sbjct: 297 DIGDYLPGGGISFTFSGDLTEVLKFLKTQGDVTVVSSPRVMTLNNQPAMISVGQEIYYKL 356

Query: 298 VSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            ++         ++    V +   G++L  TP V   G I L+I   ++      +A ++
Sbjct: 357 TTTNKVGGSDTATSENEEVKSVFAGILLDITPEVDERGMITLKINPSITALANEEDAKNL 416

Query: 349 -------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                  P  + R+  + +++  G   +L GL+       +EG+P+L  IPILG  F+  
Sbjct: 417 QGVRTMPPDIKRRQIASVIKIKDGDHAILGGLITRGHGTKEEGLPVLENIPILGYAFKKE 476

Query: 402 RFNREETEIFIAATPFLVK 420
           +      E+ +  TP +++
Sbjct: 477 QKIDYTDELVLIITPHIIR 495


>gi|294141031|ref|YP_003557009.1| type III secretion system EscC protein [Shewanella violacea DSS12]
 gi|293327500|dbj|BAJ02231.1| type III secretion system EscC protein, putative [Shewanella
           violacea DSS12]
          Length = 491

 Score =  148 bits (374), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/310 (17%), Positives = 117/310 (37%), Gaps = 34/310 (10%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ--- 195
           +    +V + G+V  +++ +   +++               ++    N + + G  Q   
Sbjct: 194 QYREQSVKIPGLVNVLKEMELGNQVANAVSGTVSNVSGPVFAADSRRNAIIVRGSSQDVT 253

Query: 196 ---------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
                          + + V+I ++     KQ+G   S +      S SF +D   + +S
Sbjct: 254 TYASLIKQLDNKPTMIEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENIS 313

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                    + +  +F   L+ALE+ +  + L+ P++  ++   A          K    
Sbjct: 314 -------TVIGNTGNFMVKLNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKL--E 364

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKA 356
                 + +   G +L  TP ++       + L +  +  +    V+ +  +P  +  + 
Sbjct: 365 GDKVAKLESVTTGTLLRVTPRLIEESGHTAVMLNLNIQDGQQSEAVSRSDPLPQVQNSEI 424

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   L SG ++++ G ++D  +     IPLL  IP+LG LFR++  + +          
Sbjct: 425 STQAILKSGESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQSVMRLFLIKA 484

Query: 417 FLVKPVAMRD 426
              +PV   D
Sbjct: 485 ---EPVNQGD 491


>gi|226327391|ref|ZP_03802909.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
 gi|225203917|gb|EEG86271.1| hypothetical protein PROPEN_01261 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/344 (16%), Positives = 115/344 (33%), Gaps = 35/344 (10%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLR-RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
           + +++ +  I            L  +    +    E + + +       TI    +   +
Sbjct: 30  NNEKISSTFIEERTSATEQSEELHHQLYPLNYADAERLGEQL----TNHTIPLLSQQGRV 85

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSIT- 220
                + S      + +  ++ + L +      QV +   I    +D L ++G Q  +  
Sbjct: 86  IIDREANSLSIIDNSKTLSEIEDWLKLRDTPQQQVHITAHIVSSSQDALNELGTQWGLQA 145

Query: 221 --------GSSSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATA--- 268
                    ++   + S  +       +      S+             +          
Sbjct: 146 LKTQTEATSTTVSNTISATSSLNSALSTPSLSALSLHQNTKNPLHYIAFNIARINGRLLE 205

Query: 269 -----------IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
                      +  +A P LT    ++AS   G +     VS     T V   +  + + 
Sbjct: 206 LELSALEQEKQLSIIASPRLTTAHEKTASIKQGTEIP--YVSRDNEITQVQFKEAVLGME 263

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            TP +    +I L ++   + P I    +  +  S   ++  T V +  G TI+L G+ +
Sbjct: 264 VTPIIQRNKKIRLILKISQNTPGIALVQSGSEHLSIDKQEISTEVAIRDGETIMLGGIFQ 323

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              Q+    IP LS IP+LG LF + R      E+ I  TP L+
Sbjct: 324 QKQQEHTAKIPFLSSIPLLGVLFSHKRDQHSRHELVIFITPKLI 367


>gi|153003602|ref|YP_001377927.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
 gi|152027175|gb|ABS24943.1| general secretion pathway protein D [Anaeromyxobacter sp. Fw109-5]
          Length = 892

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 114/334 (34%), Gaps = 54/334 (16%)

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             +           +  G V+   D Q+   L +        +     + ++++  L+  
Sbjct: 419 PSARPGGASDVTASLFSGDVKITADKQQNALLVQA-------SGADFQAIQRLVEKLD-R 470

Query: 192 GEDQVTLKVTIAEVRRDILKQIGF----------------------QHSITGSSSGPSKS 229
              QV ++  I EV      Q G                          ++      + S
Sbjct: 471 PRRQVFVEAVIMEVNLRDETQFGVGAHGIVPVDYRGDEGFIPISSQPGRVSSFDVTSAIS 530

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                 G      G       +   S   ++ AL+ +  +  L+ P + A   + +  T 
Sbjct: 531 LGGFLTGLNGPPSGVVEDLLGIKVPSLGVIVQALQSSADVNVLSTPHILASDNEESEITV 590

Query: 290 GGQHLYKTVSS-----------------------STGATSVTTHDYGVVLHFTPTVLSPG 326
           G    ++   +                       S+    +   +  + L   P +   G
Sbjct: 591 GQNVPFQAGYAPAGLGNLLTGTTATTSTLGLGGLSSLVAPIQRQNVELRLKIKPQINEGG 650

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L I+ E +E ++  +    P+   R A T +      TIV+ GL+++   +    IP
Sbjct: 651 NIRLTIE-EQTEEIVDRDPQLGPTTAKRTAKTQIVAKDQSTIVIGGLIQERNVRSVRKIP 709

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +L  +PILG LFR+S   ++ T + +  TP++++
Sbjct: 710 VLGSLPILGWLFRDSTNTKQRTNLLLFLTPYIIR 743


>gi|116626816|ref|YP_828972.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116229978|gb|ABJ88687.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 752

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 94/257 (36%), Gaps = 18/257 (7%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV- 250
              QV +   I EV  +     G    +    +GP   F+        + G   +   + 
Sbjct: 488 APRQVLIDAKIYEVDLNGAFAAGVSAYLDKKDTGP---FSRTLNAATGAGGLTLTTGALV 544

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----------KTVSS 300
           L        L A E A+  + ++ P++ A     A+   G               ++  S
Sbjct: 545 LRSHELLAALTASETASHSKVISAPSIIATDSVPATLNVGDDVPVLTSQAVAGGVQSSGS 604

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
           S    +V+    GV L     V S G + L +   VS P      +A   PS+  R   T
Sbjct: 605 SVFTNTVSNRSTGVTLSIMARVNSSGIVTLIVNQNVSSPQPPPANSAIQSPSFSNRSFQT 664

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            + +  G T+ + G++ +   Q   G+P L ++P +GA F    + +  TE+ +  TP +
Sbjct: 665 QLTVQDGDTVAIGGIILESNLQSSAGVPFLHRLPGIGAAFGAKSYTKSRTELVVFLTPRV 724

Query: 419 VKPVAMRDLSRPDDHYS 435
           +       +    D   
Sbjct: 725 I--YDTNQMVDATDEIR 739


>gi|311235499|gb|ADP88352.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris RCH1]
          Length = 696

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
                D         +    +A +   +      S  RV   + TV  L G         
Sbjct: 241 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 300

Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
                    +QR  + S+     +   Q  +  +   +N + +                 
Sbjct: 301 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 360

Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
               + V +   I ++  +  + +G  +  T             S+G  K       G  
Sbjct: 361 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 420

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G   S    +    F   ++ALE+    R L  P++  +    A+  +   +  +  
Sbjct: 421 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 479

Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
                A  +   + G VL  TP       G   +++   V +                +P
Sbjct: 480 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 538

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      +  E
Sbjct: 539 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 598

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             I  TP +V+   + +L             +    +   +       S   G
Sbjct: 599 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 648


>gi|225163988|ref|ZP_03726276.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
 gi|224801402|gb|EEG19710.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
          Length = 928

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 115/353 (32%), Gaps = 81/353 (22%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLL-NIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITG 221
            +   +       ++ ++V N+L       QV ++    +V+   L ++G      S +G
Sbjct: 557 AYDGTAIYVTQTTANLERVRNILARYNDVRQVEIEAKFMDVQEGSLDELGISWMVNSFSG 616

Query: 222 SSSGPSKSFAADFGGKF-----------------------------------VSEGGDFS 246
             +  + +      G F                                    + G   S
Sbjct: 617 KFNAGTGTVVRSLSGAFGVTGASGGGGQIVTPFGTVDVPLSPPATPGTADTGSAVGNIAS 676

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST---- 302
           + GV+  F     + A+ +      L+ P +T +SG  A      +  Y      T    
Sbjct: 677 ITGVMGNFDVAAQIRAIAQKQGSDLLSAPKVTVLSGNPAFMVVAQELRYPQSYGETESEV 736

Query: 303 ------------------GATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGV 343
                                   T + GV L  TPTV      I L +  +V+E    +
Sbjct: 737 GTSSGNGGGAAGVTITPGTPEEFVTRNVGVELRVTPTVEDDNYSITLDLNPKVTEFEGFI 796

Query: 344 NAGD------------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             G                    P +  R+  T V +  G T+V+ GL +++++++ + +
Sbjct: 797 EYGGSSVAISGNTTVTLPSGYYQPIFSTREVTTKVTVWDGATLVMGGLTREEVKRVNDKV 856

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           P+L  IP LG LF++   + ++  + +  T  LV P        P        
Sbjct: 857 PILGDIPFLGRLFKSKGESSQKRNLLVFVTANLVSPGGSPKKQ-PLQGVQPNS 908


>gi|78223066|ref|YP_384813.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
 gi|78194321|gb|ABB32088.1| type II and III secretion system protein [Geobacter metallireducens
           GS-15]
          Length = 861

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/406 (18%), Positives = 136/406 (33%), Gaps = 70/406 (17%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ +F K   ++           ++    L   D       LR  +    + V 
Sbjct: 244 KVLNESTILIFPKTPEKSK-----QYEDLVVKTFFLNTLDAKKAVNLLRTMLQVRKVYVN 298

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+      +  + + +E              AN                +V L 
Sbjct: 299 EELNAIVVRDTSELVDVAGKILE--------------ANDVPD-----------AEVLLD 333

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V + EV +  ++  G   S    S              F       S    +   +   +
Sbjct: 334 VEVIEVSKRNIENFGLALSKYAVSLNTQTPGGGFLNDTFSRASVSSSTGTTIQGTAGSEL 393

Query: 260 LHALERAT-------------------AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           L                              LA P +   + + + FT G +    T S+
Sbjct: 394 LQTFSWNGYSGFMTVPSASYSFGKSITNAEVLANPKIRVKNREKSKFTVGTRVPITTTST 453

Query: 301 STGA----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPS 350
           +        +V   D GV L+  PT++    + +++  EVS            +A  + +
Sbjct: 454 TGTTGGFSVNVQYVDVGVKLNAEPTIMLNNEVSIKLGLEVSSIIDKQTVGGTDSATTVVT 513

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R  DT + L  G T V+ GL++D+ Q+ K+ I LL  IPI+G L  N+  + ++ E+
Sbjct: 514 IGTRNLDTVLNLKDGETSVIGGLIEDNKQKGKQKIFLLGDIPIIGPLLSNNSNDNQKREL 573

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
            +A TP LV+ V              E D  +F+  + +     K 
Sbjct: 574 ILAITPRLVRSV-----------TVPEPDLVSFWSGKEDDPSVVKP 608


>gi|34556961|ref|NP_906776.1| putative type II secretion system D [Wolinella succinogenes DSM
           1740]
 gi|34482676|emb|CAE09676.1| PUTATIVE TYPE II SECRETION SYSTEM D [Wolinella succinogenes]
          Length = 731

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 59/347 (17%), Positives = 114/347 (32%), Gaps = 62/347 (17%)

Query: 143 DTVVLHGMVRTIQDSQR-------AVELSETFLSQSGRNQYANSSSK--KVMNLLNIAGE 193
           ++ +L G + + Q  Q           +             +    +  + +  L+   +
Sbjct: 361 ESEILGGSLESSQAQQARTTKSESGAVIVNRGAGLVTVTGTSPQVDRVAQYIEELHARLQ 420

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS------------------------------- 222
            QV + V+I  VR    +  G   +   +                               
Sbjct: 421 SQVMIDVSILTVRHSKGQTTGVDWNQLYNLQNIAIHTKSTTTSNSSGSGSTSDTTSITTG 480

Query: 223 SSGPSKSFAADFGGKFVSEGG----DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            SG S       G   +  G      ++V       S   V+  L+    + +++ P + 
Sbjct: 481 PSGTSIQQGTASGASVLGVGSHSQVGYAVNIFSQGVSLTRVIEFLQSYGDVTSVSNPKVL 540

Query: 279 AISGQSASFTSG-----------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
            ++ Q A  + G                 T +++   T   +   GV+L  TP+V +   
Sbjct: 541 TLNNQPAMISVGNIIRYRKSTVFQTSGSNTGTNTNTDTEYPSVFAGVLLDITPSVFND-E 599

Query: 328 IGLRIQTEVSEPVIG------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           I L+I   +++                P+    +  + V +  G  IVL GL+    Q+ 
Sbjct: 600 IMLKINPSITQTKSTDVENASTALETPPNLSTNQLSSLVRIKDGEKIVLGGLISKSNQKK 659

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           +  +PLL  +P+LG LF  +       E+ I  TP ++K      L 
Sbjct: 660 ENKVPLLGDVPVLGYLFSYNADVESTDEMVIVITPHIIKGSQGPSLQ 706


>gi|93006993|ref|YP_581430.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
 gi|92394671|gb|ABE75946.1| type II and III secretion system protein [Psychrobacter
           cryohalolentis K5]
          Length = 792

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 54/276 (19%), Positives = 101/276 (36%), Gaps = 44/276 (15%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV--- 239
           K++  ++I    QV ++  I        K+IG +  I  + +  +++       + +   
Sbjct: 514 KLIGKIDIPVR-QVMIEARIVSATDSFSKEIGVRWGILSNGAANNRNLLVGGSNQTLWDL 572

Query: 240 ------------------------------------SEGGDFSVKGVLDRFSFETVLHAL 263
                                                 G        +  F  +  L A+
Sbjct: 573 KDFDVQTTTINGQTVSYPKYDITRPDNLNVDLGVDNPAGRIAFGLLGISDFMLDLELSAM 632

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +       ++ P +     Q+A  +SG Q  Y+   S++GAT+ +  +  + L  TP + 
Sbjct: 633 QADNRGEVISTPKILTSDKQTAKVSSGTQIPYQEA-SASGATTTSFKEAALSLEATPNIT 691

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G+IGL++      P I  N     +       T V +  G TIVL G+ K+      +
Sbjct: 692 PDGKIGLQLLITNGTPTIINNQV---AIAEDSISTNVIVEDGQTIVLGGVFKNRTNNGVD 748

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P L  +P +G  FR    +  + E+ I  TP L+
Sbjct: 749 KVPFLGDLPYIGRAFRKDVRSNTKEELLIFITPKLI 784


>gi|281354921|ref|ZP_06241415.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281317801|gb|EFB01821.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 794

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 53/247 (21%), Positives = 98/247 (39%), Gaps = 13/247 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----GKFVSEGGDFSVK 248
             QV  ++ I E+      + G Q +      G   S   +F         SEG    + 
Sbjct: 496 PAQVLFQILIVEITLTDSNEFGLQFNNVSYGGGTGVSTGTNFNDIGMNDSSSEGFKLGIF 555

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSS 301
              +       L AL     I+ ++ P L   S  +A    G               ++ 
Sbjct: 556 DKDNPEENFGYLRALAGRDNIKVISSPQLLVTSNTTAKIQVGQDVPILTQDLTTSDSATG 615

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTT 359
               S T  + G++L   P V S   I ++I+ +VSE       +A D P    R  +T 
Sbjct: 616 NVTRSYTYEETGIILSLIPQVTSTDLISMQIEQKVSEAIKNTITSATDTPVISTRVLNTA 675

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + +G T+V+ G++++      + +P+++ IP L   F N+  + E TE+ +  T ++V
Sbjct: 676 MTIANGKTMVIGGMIQEKNNDRLQSVPIIADIPFLRRFFGNTNQSVERTELLVLVTGYIV 735

Query: 420 KPVAMRD 426
              +  +
Sbjct: 736 NGKSPVE 742


>gi|94987602|ref|YP_595535.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94731851|emb|CAJ55214.1| putative type III secretion protein YscC [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 583

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 24/293 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGGDF 245
           V +   I ++  +  + +GF      S    +                  G     G  +
Sbjct: 289 VEIHAAIVDIDSEFKRDLGFTLQQGSSKKSMTMGGDFSTTQQSLPLEITKGTVEGGGLTY 348

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           S         F   + ALE     R L +P++  +    A+  +   +  +     T   
Sbjct: 349 STIYSKGVEFFLARVQALETEGEARVLGKPSVLTVDNIQATLENTSTYYIQVQGYQT--V 406

Query: 306 SVTTHDYGVVLHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDM-PSYRVRKA 356
            +   + G VL  TP ++            + +      +     V +  + P  +  + 
Sbjct: 407 DLFKVESGTVLRVTPHIIYNNDGTKSIKLVVAIEDNQNDNSTDPTVGSNVVLPPIKQTRI 466

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +T   + +G ++++ G   +      +GIP+L  IPI+G LF+ +    ++ E  I  TP
Sbjct: 467 NTQGVVNTGQSLLIGGYYYEQQGVNDKGIPILKDIPIIGYLFKTNTKTSKKMERLILITP 526

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAI 469
            ++ P     ++    H       ++   +  + I           +  +  +
Sbjct: 527 RIIMP---NTVTPIPAHVDDPSFHRSAVQDTYDDIKPKSSTGGGCSRKRRAPV 576


>gi|317486813|ref|ZP_07945629.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
 gi|316921976|gb|EFV43246.1| YscC/HrcC family type III secretion outer membrane pore [Bilophila
           wadsworthia 3_1_6]
          Length = 614

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 111/313 (35%), Gaps = 29/313 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           G     Q++ +   +++  ++    N          KV+  L+    + V +   I ++ 
Sbjct: 250 GGQAAPQNATQVNIMADPRVNAVLVNDAEYRMPYYAKVIADLD-RPVELVEIHAAIVDID 308

Query: 207 RDILKQIGF----------QHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFS 255
            D  + +G             S  G  SG    F+        S  G + S         
Sbjct: 309 SDFKRDLGVTYQGANSRDKGWSTGGEFSGTGDKFSPLPTMGTPSGTGMNLSTIYTHGADF 368

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE     R L  P++  +    A+  +   +  +       A  +   + G V
Sbjct: 369 FLARIQALEAEGEARMLGRPSVLTVDNVQATLENTSTYYIQV--EGYQAVDLFKVEAGTV 426

Query: 316 LHFTPTVLSPGR--------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           L  TP ++   R        + ++     S+    V+   +P  +  K +T   + +G +
Sbjct: 427 LRVTPHIIRNERGQTSIKLAVSVQDDQNDSKDAP-VSDNSVPPIKQTKINTQAIVGAGQS 485

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----PVA 423
           +++ G   +       GIP+L  IP+LG LF+ +    +  E  I  TP ++     P  
Sbjct: 486 LLIGGYYYEQKSTDASGIPILMHIPVLGNLFKTTSKGTKRMERLILITPKVIHLDEIPTT 545

Query: 424 MRDLSRPDDHYSV 436
              +  P  H S 
Sbjct: 546 PPRVDEPTFHRSP 558


>gi|283786644|ref|YP_003366509.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
 gi|15723915|gb|AAL06362.1|AF311901_14 EscC [Citrobacter rodentium]
 gi|282950098|emb|CBG89732.1| T3SS structural protein EscC [Citrobacter rodentium ICC168]
          Length = 512

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 48/247 (19%), Positives = 101/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   S +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQSSIAFNSS------AAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                    V++  I      +P  +  +  T
Sbjct: 386 TLLRVTPRILDDTSNSLTGKRRERVRLLLDIQDGNQSVNQSNIQNAGSLLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           ++  +  
Sbjct: 506 IRSASSE 512


>gi|325521797|gb|EGD00533.1| putative type IV pilus secretin [Burkholderia sp. TJI49]
          Length = 215

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/187 (23%), Positives = 80/187 (42%), Gaps = 3/187 (1%)

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
            G F +    F++         +  L ALE     + ++ P +       A    G +  
Sbjct: 1   TGGFDAATAGFTLFAAPLSRVLDIELSALEAQGRGQIVSRPRVVTADRAKAIVEQGAELP 60

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           Y+      G + V      + L   P +   GR+ L +  +V++  +G      P+   +
Sbjct: 61  YQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSVGEPTAAGPAIHTK 117

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T VE+  GGT+ + G+ +   +     +PLL KIP+LGALFR+     + +E+ +  
Sbjct: 118 HVQTRVEVEDGGTVAIGGIYERLRRDDVTRVPLLGKIPVLGALFRHRAQREQRSELVVFI 177

Query: 415 TPFLVKP 421
           TP +V+ 
Sbjct: 178 TPTVVRA 184


>gi|237753431|ref|ZP_04583911.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375698|gb|EEO25789.1| conserved hypothetical protein [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 487

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 99/285 (34%), Gaps = 34/285 (11%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---------- 217
           L     ++ +    +  +  L+   + QV + V I  VR + +K +G             
Sbjct: 186 LISVKGDKKSLQKVESYIEALHKRLQKQVLIDVQILSVRHNNVKTMGINWDSLYNLQNLM 245

Query: 218 -------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
                  +  G +     +      G        + +       S   ++  L+    ++
Sbjct: 246 IPPFSESATLGGNGEIGSTSGISITGGSKGSSVQYGLNIFSAGLSLNRIVEFLKGYGEVQ 305

Query: 271 TLAEPTLTAISGQSASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
           +++ P +  ++ Q A  + G           Q+     + +       +   GV+L  TP
Sbjct: 306 SISNPKVLTLNNQPAMISVGDILRYKKSNIYQNTNAQTTLTNTNNEYPSIFAGVLLDITP 365

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374
            V     I L++   +++                P+    +  + V++ +   ++L GL+
Sbjct: 366 LVFED-SIMLKVNPSITKTKDMQTKIAASAFDAPPNLTTNQLSSIVKVKNNQKVILGGLI 424

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  +    IPLL  IP++  LF  +  +    EI    TP ++
Sbjct: 425 AQNTAKESNKIPLLGDIPLIKPLFSYTHDSISTEEIVFIITPRII 469


>gi|323189406|gb|EFZ74687.1| hypothetical protein ECRN5871_2294 [Escherichia coli RN587/1]
          Length = 512

 Score =  147 bits (372), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSSNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|229588267|ref|YP_002870386.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
 gi|229360133|emb|CAY46990.1| putative type III secretion protein [Pseudomonas fluorescens SBW25]
          Length = 713

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/326 (15%), Positives = 98/326 (30%), Gaps = 20/326 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             ++  L   L   +  +N     +     +       +   R                 
Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
             +  + ++  L++A +  + +   I ++ R  L++ G       S      + A     
Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +            + +R  F   + ALE       ++ P++  +  Q A           
Sbjct: 372 QV----------SIENRDRFYADIRALEAKGLATMVSNPSVLTLENQPAVIDFNRTQYIS 421

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN--AGDMPSY 351
                     VT    G  L   P V +     +I L +  E             + P  
Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNFDETNPERDPNHPDV 478

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410
           R  K  T   +    ++V+ G    D    ++ IPLL  IP+LG  LF ++  +    E 
Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLFSSTERHNNRRER 538

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
               TP ++          P D  + 
Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564


>gi|259909699|ref|YP_002650055.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
 gi|224965321|emb|CAX56853.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia pyrifoliae Ep1/96]
 gi|283479785|emb|CAY75701.1| Type III secretion system outer membrane pore HrcC [Erwinia
           pyrifoliae DSM 12163]
          Length = 676

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + + +        +   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
              + AD  +H      +     G A ++  L+        +              ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                  R+   + +    G   +  D   +  +S    + +   +  +    +   L+ 
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299

Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                Q  V +   I ++ R  L ++      T        S  +  G  FVS       
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D   F   + ALE       +A P++  +  Q A                     +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406

Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
                G  L  TP  +   G   +++  ++ +  +  N     +   R    T   +   
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G   ++       IPLL  IP +G LF + R    + +     TP L+      
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
                 D+     DA      RV + +         E +  +    +   GF  +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577


>gi|312114563|ref|YP_004012159.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
 gi|311219692|gb|ADP71060.1| type II and III secretion system protein [Rhodomicrobium vannielii
           ATCC 17100]
          Length = 636

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 158/462 (34%), Gaps = 55/462 (11%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK-VIILQVPVDVQDVL----- 70
                  +  P       A +  +   +     ++   +K    L V V  ++V      
Sbjct: 185 LVLAAFRSASPVAVNFRDAKLKDALKTLCDPYALNFVFDKNADNLDVSVSARNVSFEQAF 244

Query: 71  --VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
             +   + A   V    +++++              + ++           ++ L+    
Sbjct: 245 NMIMQSSNAAYKVLGTNSIFIYEDTP----------EKRKQYADRYFKTFHLSTLKAERM 294

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
             I  +++ V+ V     L G ++ I+D++  +E++E  ++ +                 
Sbjct: 295 AEILKASMDVKTVFANNDL-GTIQ-IRDTRETLEVAERLIATND---------------- 336

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
                 ++ L+V I E+ R   +Q+G  +  + +   P  SF     G  ++     +  
Sbjct: 337 --RKPAEIMLEVEILEIDRTKAEQLGLDYGSSITVQLPQVSFTDLANGAKLATNSVITFP 394

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----SSTGA 304
                       + L+     RTL+ P +  + GQ A    G +   ++      +    
Sbjct: 395 --------TVTFNYLKTDVGARTLSNPRIRTVDGQPAKIHVGDRVPLQSSFVQDTTGQTR 446

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--YRVRKADTTVEL 362
           T    HD G+ L   P     G I + ++ EVS     +     P+     R   TT+ L
Sbjct: 447 TLFEYHDIGIQLDVIPKYHLDGSIFVDLKIEVSSLGSNLGTAAQPAYAIGSRNVHTTMIL 506

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
               T +L GL+K++ Q    G+P+  S + +L  LF  S      +E+ +  TP L++P
Sbjct: 507 RENETALLGGLIKEEEQHNMNGLPVERSGVSVLDRLFSTSSDKVGRSELLLTITPRLIRP 566

Query: 422 VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
            +     R    +    +           +    E+      
Sbjct: 567 QSFA--QRSATDFYSGTEGTYSIRAEHEYLKKAPESGLAPRY 606


>gi|39996877|ref|NP_952828.1| type II secretion system protein [Geobacter sulfurreducens PCA]
 gi|39983765|gb|AAR35155.1| type II secretion system protein, putative [Geobacter
           sulfurreducens PCA]
 gi|298505890|gb|ADI84613.1| type II secretion system secretin lipoprotein PulQ [Geobacter
           sulfurreducens KN400]
          Length = 822

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/412 (17%), Positives = 138/412 (33%), Gaps = 79/412 (19%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ +F K   +A           M+    L   D       LR  +    I V 
Sbjct: 244 KVLNESTILIFPKTPEKAK-----QYEDLMVKTFYLNSLDAKKAVNLLRTMLQVKKIYVN 298

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+       +    A ++ E                              V L+
Sbjct: 299 EELNALVIR---DNPELIDVAGKILEANDVPDAE----------------------VLLE 333

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG----------------- 242
           V + +V ++  +  G   S    S     +     GG F S+                  
Sbjct: 334 VEVIQVSKNNSELFGLGLSRYAVSLN---ARTPGSGGDFFSDTFDPKVTTTSNDTTTVTT 390

Query: 243 -------GDFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                    F+  G     +      +  ++ +    L+ P +   + + + FT G +  
Sbjct: 391 TQVKNLLNLFNWNGYQGFLTVPSATYNFSKQLSNAEVLSNPKIRVKNREKSKFTVGTRVP 450

Query: 295 YKTVSSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
             T SS+        +V   D GV L+  P +     + +++  EVS  +     G   +
Sbjct: 451 ITTTSSTGSVGGVTVNVQYVDVGVKLNAEPVIQLNNEVTIKLGVEVSSIIGEKTVGSGDA 510

Query: 351 YR------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                    R  DT + L  G T ++ GL++D   + K+ I LL  IP++G+L  +    
Sbjct: 511 ISSVVTIGTRNVDTVLNLKDGETSIIGGLIEDTKSKSKQKIWLLGDIPLIGSLLSSHNDR 570

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
            +++E+ +A TP +V+ V+             E D  AF+  + +     K 
Sbjct: 571 YDKSELVLAITPRIVRAVS-----------VPEADVAAFWSGKEDDPTAVKP 611


>gi|266635497|gb|ABA39798.2| HrcC [Erwinia pyrifoliae]
          Length = 676

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + + +        +   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
              + AD  +H      +     G A ++  L+        +              ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                  R+   + +    G   +  D   +  +S    + +   +  +    +   L+ 
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299

Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                Q  V +   I ++ R  L ++      T        S  +  G  FVS       
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D   F   + ALE       +A P++  +  Q A                     +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406

Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
                G  L  TP  +   G   +++  ++ +  +  N     +   R    T   +   
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G   ++       IPLL  IP +G LF + R    + +     TP L+      
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
                 D+     DA      RV + +         E +  +    +   GF  +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577


>gi|238752349|ref|ZP_04613827.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
 gi|238709390|gb|EEQ01630.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia rohdei ATCC 43380]
          Length = 486

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 101/288 (35%), Gaps = 12/288 (4%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVT 197
              + + L G              S      +   +   ++     +L++       Q+ 
Sbjct: 203 SAGNNLPLAGTEGQEDAHINMPLFSADPRQNAVIIRDRQANMPLYSSLISQLDQRPVQIE 262

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           + VTI +V    + Q+G   S + S  G   SF             D     + D  +F 
Sbjct: 263 ISVTIIDVDAGDISQLGIDWSASTSIGGMGISFNRGL----AKGNSDGFSTVIGDTGNFM 318

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L+AL++ +  R L+ P++  ++   A          K          + +   G +L 
Sbjct: 319 VRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVTSGSLLR 376

Query: 318 FTPTVLS-PGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
            TP ++   G   + +   + +    V+   +  +P  +     T   L  G +++L G 
Sbjct: 377 VTPRMIDADGVKEVLLNLNIQDGQQQVSLISSEPLPQIQNSDISTQATLRVGQSLLLGGF 436

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++D   + +  IPLL  IP+LG LFR++                 V  
Sbjct: 437 IQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIKAVPVDA 484


>gi|294055173|ref|YP_003548831.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614506|gb|ADE54661.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 709

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 51/267 (19%), Positives = 105/267 (39%), Gaps = 21/267 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K++++ ++I    QV ++V I EV     +  G        +  P  +     G   V  
Sbjct: 394 KELIDKIDIPLP-QVRIEVIITEVTLTENQASGLSSFAATFNDRPDITNLPVQGTGPVGL 452

Query: 242 GG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----Y 295
           G  +F++   +  F+   VL   E    ++ L+ P++     +                 
Sbjct: 453 GLDNFNISSQIGDFAISAVLDLAEDDDNVKILSTPSIVVSHNEEGKINVSQSRPIETGTT 512

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIG 342
              +S T    +   D G+ L  TP + + G + + I+  V              E    
Sbjct: 513 TNTTSETVTNQIEYRDVGIQLTVTPLIGADGSVTMTIEQTVDTIFSESSTTNTGDEDGTT 572

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    P   VR+A++T+ +     I+L GL ++  +  +   P++ ++P++G L    +
Sbjct: 573 SSVDTNPVIGVREANSTITVNDREVIILGGLQENQREVSRTYFPIIGRMPLIGDLLSGKQ 632

Query: 403 FNREETEIFIAATPFLVK-PVAMRDLS 428
                TE+ I   P +++ P A  +L+
Sbjct: 633 IEYNRTELIIFVRPTILRNPQAATELT 659


>gi|83858602|ref|ZP_00952124.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
 gi|83853425|gb|EAP91277.1| general secretion proteinD [Oceanicaulis alexandrii HTCC2633]
          Length = 658

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 60/244 (24%), Positives = 101/244 (41%), Gaps = 12/244 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV+++  I  V      + G        S      FA +  G   S    FS   +  
Sbjct: 399 RAQVSIEAAIISVSLQDEFRFGVNWGA-APSEQIDVRFADNADGTAASVFPGFSATYL-- 455

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGAT 305
               E  L+ L+  T I  ++ P + A+  Q A    G Q           T   +    
Sbjct: 456 NTDIEATLNMLDAVTEIEVISRPNVMALHNQQAELQVGDQVPVITQSAVSVTNPDAPIVN 515

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPS 364
                D GV+L  TP V + G + + I  EVS  V   +   D P+ R R+  +T+ +PS
Sbjct: 516 QTAYRDTGVILSVTPHVRAGGIVEIDITQEVSSVVQTSSSGIDSPTIRQRRITSTLLVPS 575

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
           G ++ L GL+       + G+P+L ++P++G +F +   + + TE+ I   P ++  P  
Sbjct: 576 GQSVALGGLIATTRTTNERGVPVLRELPVVGRVFGSDSESVDRTELVILLKPTVITDPSQ 635

Query: 424 MRDL 427
             D+
Sbjct: 636 PSDV 639


>gi|283781428|ref|YP_003372183.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283439881|gb|ADB18323.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1314

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 59/275 (21%), Positives = 102/275 (37%), Gaps = 45/275 (16%)

Query: 191  AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------ 244
                 V ++V IAEV    ++Q+G +  I  S        +  F    V+ G +      
Sbjct: 811  RRPPMVIIQVMIAEVLLSDVEQLGVELGIQDSLLFDRGIGSVGFPFNNVALGNNSDATSL 870

Query: 245  -------------------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                                       +       S   ++ AL+++  ++ ++ P +  
Sbjct: 871  ATRESVAGQGLSSFGVGRTDPTLGYGGLVLSASSESVSVLVRALQQSRRLQVISRPQVQT 930

Query: 280  ISGQSASFTSGGQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            +  Q A    G +    T S    +    +    + G++L  TP     G I + I  E 
Sbjct: 931  LDNQPAFVQVGARVPRITSSQLTVNGTINNTVLENVGIILGVTPRTAPDGMIVMEIDAEK 990

Query: 337  SEPVIGVNAGDM-----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            SE         +           P  R+  A TTV   SG T+++ GL+  + Q+    +
Sbjct: 991  SELGPEAEGIPISINSNGDVIRSPQIRIATAQTTVSARSGQTVIIGGLITKNQQESTRRV 1050

Query: 386  PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            P L  IP+LG LFR    + E  E+ I  TPF+++
Sbjct: 1051 PYLGDIPVLGRLFRFDSVSDERRELLIILTPFIMQ 1085


>gi|329901079|ref|ZP_08272701.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327549244|gb|EGF33826.1| Type III secretion outermembrane pore forming protein
           (YscC,MxiD,HrcC, InvG) [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 432

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 89/227 (39%), Gaps = 4/227 (1%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ ++  I ++ R  L Q+G +   T  S   + +  +    K  S     S   + +
Sbjct: 67  PQQIEIEALIVDIDRSQLNQLGAEWGFTAGSVSATFNGMST-DSKGASLPISGSTLLIKN 125

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   L+A+E     R LA+ T++ +   +A            V        +   + 
Sbjct: 126 AANFYAKLNAMENKGDARILAKQTISTLENIAAVLDLSQSRYLPLV--GERVVDLANVNV 183

Query: 313 GVVLHFTPTVLSPGRIG-LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           G +L  TP ++  G +  +R+   + +     +A    +       T   +    T+++ 
Sbjct: 184 GTMLKVTPRIVREGPLTRVRLDINIEDGAFSADAASSTNVTRSTITTQAIIEPQHTLLIG 243

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           G   +   Q ++ IP+L  IP+ G LF+N+  +    E     TP +
Sbjct: 244 GYHSEAKTQSRQKIPVLGDIPVFGGLFQNNSDSVNNRERLFLITPRI 290


>gi|254443244|ref|ZP_05056720.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257552|gb|EDY81860.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 582

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 74/498 (14%), Positives = 163/498 (32%), Gaps = 97/498 (19%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVV 81
             A+    +      ++  D          + L+   ++ V    +++       AD+  
Sbjct: 66  PQAEEEVAQGEEQNGVSSLDDAFASPLGQEMTLDASDLISVDYPNEEIRTVLRNVADLYS 125

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI--------------------------- 114
            +   + +    +G  ++ L     +Q+ ++ +                           
Sbjct: 126 LN---LVVPDTLIGTTSIKLRDVTWRQIYSVVLDPVGYTFIEEGSIIKIVSRDALNIEPP 182

Query: 115 ------LIERDIAHLEMTLRRFIADSN---IRVEMVSDTVVLHGMVRTIQDSQRAVE--- 162
                 +   +   +  TLR  +  S    ++V+  S+ +++      ++D ++ VE   
Sbjct: 183 ITEIFMVNYAEADSIASTLRNLVDSSKGGAVQVDTRSNALIVSERASKMEDIRQVVERLD 242

Query: 163 -------LSETFLSQSGRNQYANSSSKKVMNLLNI--------------AGEDQ------ 195
                  +   F+  +  +      +   +    +                  Q      
Sbjct: 243 KPTQQVFIETRFIEVTNTDVKNIGVNWSTLRNYGVSVGNINKQWGDSFQRQRSQGSNEDK 302

Query: 196 ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------------KF 238
                ++    E     L+ +G ++ I  ++        A   G                
Sbjct: 303 NASTNVEGVTFEGSDSSLEGVGVRNGILRNNLTGETIIDATSVGESTLISSAVKDLYSLV 362

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            + G + S   V     F  VL AL+     R ++ PT+  ++ Q A  + G Q      
Sbjct: 363 DTSGLNRSSSAVFTADQFGFVLSALKEQGGSRLVSNPTVVTLNNQEAMISVGEQFPIPNY 422

Query: 299 SSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----GVNAGDM 348
             +        +     D G++L  TP+V   G I +++  EVS         G     +
Sbjct: 423 QYNEETGGFEVSGFEFKDIGIILKVTPSVNHTGLITMKVVPEVSSRTGERSFGGAGNASI 482

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R+ +T + L  G T+ + GL++    + K  +P+L K+P LG LF++   +  + 
Sbjct: 483 PIISTRRTETRIALKDGFTMGIGGLMESTGTEDKNHVPVLGKVPGLGRLFKHESKSETKR 542

Query: 409 EIFIAATPFLVKPVAMRD 426
            + I  T  ++ P    D
Sbjct: 543 NLLIFITARIL-PSEEAD 559


>gi|212711709|ref|ZP_03319837.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
 gi|212685811|gb|EEB45339.1| hypothetical protein PROVALCAL_02784 [Providencia alcalifaciens DSM
           30120]
          Length = 567

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 61/351 (17%), Positives = 111/351 (31%), Gaps = 31/351 (8%)

Query: 82  HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADS 134
            + RT  L G++    G   VI  L  + G  +     +    +      +   +     
Sbjct: 197 VTDRTYSLRGQSVTVPGMLTVISDLFKNGGGSVEEALNVEPIKLNTSGDDIDALMDTPIG 256

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
                     +V  G       S  A   S + + + G           V NL N     
Sbjct: 257 GGSPVENRQLIVKRGNASNSAFSLVAHPDSNSLIVK-GSQSQIRYVRDLVKNLDN--RRR 313

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L + I ++ R  L  +G    +    +G                   F+   + D  
Sbjct: 314 QVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------SISFNRSTLPDSS 359

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
            F   + AL +    + ++ P L       A F +      K         ++    YG 
Sbjct: 360 KFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYGT 417

Query: 315 VLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           ++   P +     + + +  E             N   +PS      +T   +    +++
Sbjct: 418 MISVMPRISGGQSVEMEVNIEDGAESRDSSGKTSNVEGLPSVNRTSINTVARIAKDSSLL 477

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + G  +D     +  IPLL  IP +G LFR+S  N+++        P L+ 
Sbjct: 478 IGGYTRDQYIDNESKIPLLGDIPWIGGLFRHSSTNQQKMVRLFLIQPRLLD 528


>gi|160872504|ref|ZP_02062636.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
 gi|159121303|gb|EDP46641.1| putative fimbrial assembly protein PilQ [Rickettsiella grylli]
          Length = 442

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 111/288 (38%), Gaps = 29/288 (10%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203
           +L     T+  +Q  V      L+ S   + +     ++++L+    +   Q+ ++  + 
Sbjct: 148 LLKDKANTLLSAQAIVN--ADNLTNSLWIKDSPVQMNRIIHLIKKLDKPIGQILIEARVV 205

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAAD----------------------FGGKFVSE 241
            + ++  K++G Q +++          +                                
Sbjct: 206 SIDQNKEKELGAQFNLSRMRPVNDLLKSTLRNEVSNQNTHLLQHLTMDLPLFSANSLGLA 265

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                +  +      +  L ALE+  A   ++ P L     Q A   +G +  Y+  +S 
Sbjct: 266 SLGLRLLNLGKNSFLDLELSALEKEGAAEVISTPHLITADQQPAFIEAGDEIPYQEKASG 325

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            G + +      + L  TP ++   RI L +  EV++        D P+ + R   T + 
Sbjct: 326 GGTSLI-FKKAVLSLKVTPQIMPQERIILDL--EVNQDQPNSVMVDAPTIKARGIKTQII 382

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + SG TIVL G+ +    +L++ +P L  +P++G LFR ++     +E
Sbjct: 383 VKSGETIVLGGVYEYSQGKLEQRVPFLGSLPLIGRLFRLTKVYNRRSE 430


>gi|310766437|gb|ADP11387.1| hrp/hrc Type III secretion system-Hrp/hrc secretion/translocation
           pathway-hrcC protein [Erwinia sp. Ejp617]
          Length = 676

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 68/475 (14%), Positives = 138/475 (29%), Gaps = 40/475 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + + +        +   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELVKRFSEQREKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
              + AD  +H      +     G A ++  L+        +              ++ +
Sbjct: 184 RYASVADRTIHYRDQTVVI---PGVATMLNELMNGKRAAPASASGSDSAPGGPDTTSMMQ 240

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                  R+   + +    G   +  D   +  +S    + +   +  +    +   L+ 
Sbjct: 241 NTQTLLSRLSSRNKSANKAGGRDSDID-DVSGRISADVRNNALLIRDDDKRRDEYSQLIA 299

Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                Q  V +   I ++ R  L ++      T        S  +  G  FVS       
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D   F   + ALE       +A P++  +  Q A                     +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406

Query: 308 TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
                G  L  TP  +   G   +++  ++ +  +  N     +   R    T   +   
Sbjct: 407 QPVTAGTSLQVTPRAVGNQGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALISEN 466

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G   ++       IPLL  IP +G LF + R    + +     TP L+      
Sbjct: 467 RALVLGGFHVEESADRDRRIPLLGDIPWIGQLFSSRRHEISQRQRLFILTPRLIGDQTDP 526

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGFIYK 474
                 D+     DA      RV + +         E +  +    +   GF  +
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGFQVQ 577


>gi|71906532|ref|YP_284119.1| type II and III secretion system secretin [Dechloromonas aromatica
           RCB]
 gi|71846153|gb|AAZ45649.1| type II and III secretion system protein:Secretin,
           N-terminal:Secretin/TonB, short N-terminal
           [Dechloromonas aromatica RCB]
          Length = 585

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 92/292 (31%), Gaps = 53/292 (18%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK------------- 228
            + +    +  E QV L+  I EV  +   Q G   S  G  +                 
Sbjct: 264 DEYLKATQLVVERQVMLEAKIIEVSLNDSYQTGINWSKFGGIANRFSLGIAAPSATLAGS 323

Query: 229 -----------------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                            +     G       G           +F  +L  LE    ++ 
Sbjct: 324 GVISGSAAGVSGGTAVAAVPGSGGAMATGPTGRGFFGLTFQSNNFAALLSFLEGQGDVQV 383

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHF 318
           L+ P +   + Q A    G    + T  S+                 ++     G+ L  
Sbjct: 384 LSSPRIATTNNQKAVLKVGTDDYFVTGISTNVTTGTGTGGNVVTPNITLQPFFSGISLDV 443

Query: 319 TPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTI 368
           TP +   G I L +   VS             +G     + S  + ++D+ V +  G  +
Sbjct: 444 TPQIDDEGNIILHVHPSVSVVEEKSKSVNLGDLGTYTLPLASSTINESDSIVRVQDGSIV 503

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + GL+  +    + G+P +S +P LG LF     +  + E+ I     +++
Sbjct: 504 AIGGLMSQEQNTNRYGLPGISGVPGLGLLFGQKSVSNRKRELVILMKSTVIR 555


>gi|146343151|ref|YP_001208199.1| general secretion pathway protein D [Bradyrhizobium sp. ORS278]
 gi|146195957|emb|CAL79984.1| General secretion pathway protein D [Bradyrhizobium sp. ORS278]
          Length = 768

 Score =  147 bits (371), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247
           QV +  TIAEV        G Q  ++    G      +    +  S     +       +
Sbjct: 488 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDRGSITNTQTTSVATATTAAATTALI 547

Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              L  F+F          +L AL   T+++ L+ P+L  I+ Q+A+   G      T S
Sbjct: 548 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 607

Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                 S+T   ++   + G++L   P + + G + L ++ E+S       A   P+   
Sbjct: 608 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQTAASLTPTVSQ 667

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RK  + + + +G T++LAGL+ +     + GIP   +IPILG  F +       TE+ I 
Sbjct: 668 RKVKSAISVANGQTVLLAGLISEQQTGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 727

Query: 414 ATPFLVK 420
             P +++
Sbjct: 728 IRPQIIR 734


>gi|47420041|gb|AAT27370.1| pIV [VCSM13 interference-resistant helper phage]
          Length = 426

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
           N  ++G +   +   +   +  I  L  +  +             V   +D V     + 
Sbjct: 80  NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
            ++       + E F+  +        S     NLL ++                    D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  I EV++       F       +     +          S GG F   G+ +  
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
                + AL+  +  + L+ P +  +SGQ  S + G    + T   +           ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|153902280|dbj|BAF74221.1| protein IV [Enterobacteria phage f1]
          Length = 426

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
           N  ++G +   +   +   +  I  L  +  +             V   +D V     + 
Sbjct: 80  NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQAYDDNSAPSGGFFV-PQNDNVTQTFKIN 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
            ++       + E F+  +        S     NLL ++                    D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  I EV++       F       +     +          S GG F   G+ +  
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
                + AL+  +  + L+ P +  +SGQ  S + G    + T   +           ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|94968501|ref|YP_590549.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550551|gb|ABF40475.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 808

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/476 (14%), Positives = 147/476 (30%), Gaps = 71/476 (14%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ------- 67
            + S   +      I +     +            +++   +                  
Sbjct: 333 AVRSLEAASVMATTIAKDKVDNVLPPTASEAPAGAVNLAQEQQTQQHSAQPASGPRYTGE 392

Query: 68  --DVLVSDPTKAD----VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
              V + D    D    +   S   + L     G   ++L      Q L++ +       
Sbjct: 393 PISVNLKDVDLKDFFRLIHEISGLNVVLDPSVKGTVTLVLDDVPWDQALDIVLRNNGLDR 452

Query: 122 HLEMTLRRFIADSNIRVEMVS------------DTVVLHGMVRTIQDSQRAVELSETFLS 169
            L+  + R  +   +R E V+            D V +   +   + +     L +   +
Sbjct: 453 QLDGNVLRIASIETLRTEAVARRQQLEAQALAVDKVTVTRFLSYARSADLVPTLKKFLSA 512

Query: 170 QSGRNQYANSSS-------------KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +         ++              ++++ L+     +V ++  +    R  ++++G Q
Sbjct: 513 RGDIIADGRMNALVISDIPGVIPSLDRLISQLD-RKTQEVEIEARVVAATRTFVRELGIQ 571

Query: 217 HSITGSSSGPSKSFAADFGGKFVS--------------------------------EGGD 244
                  +  S S   + G    +                                    
Sbjct: 572 LGGGWGGASTSVSGNPNAGFGSTNFKNPAGQPITGAPFPISTTGAFPLFTNFQVLNPTAG 631

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             +  +   +  +  L A E+   ++ L+ P +   +  +A    G +    T+S   G 
Sbjct: 632 LELINIGHSYGLDLYLSAAEQRGLLKILSRPRVVTQNNVTALVRQGFRLPVVTLSQLNGP 691

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
            +VT  D  + L  TP +     I L +  E + P         P    ++  T V +  
Sbjct: 692 PTVTYVDAFLRLTVTPQITVENTIFLAVDVENTTPDFTRTVLGNPILLTQQTTTQVLVTD 751

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GGT+ + G+++       + +P+L  IPIL  LF +   N +  E+    TP +V+
Sbjct: 752 GGTVTIGGVVQTQNTLTSQEVPILGDIPILKYLFMHKTTNTQTQELIFFITPKIVQ 807


>gi|27550050|gb|AAO18033.1| LscC [Photorhabdus luminescens]
          Length = 621

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 52/356 (14%), Positives = 116/356 (32%), Gaps = 30/356 (8%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDIL---IERDIAHLEMTLRRFIADSNIRVEMV 141
           +   L  +  G   V +       +++  I       +   +   L R ++D+N+     
Sbjct: 179 QQSLLRSEKTGALTVEIFPLKYASVVDRKIQYRDTSIEAPGVATILSRLLSDTNVT---- 234

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGEDQVTLK 199
                + G   +      +                +          +L+N+  +    ++
Sbjct: 235 ----TVTGEASSSTGGSYSSRAVVQAEPSLNAIIVRDNPERMPMYAHLINVLDKPSARIE 290

Query: 200 V--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK---------FVSEGGDFSVK 248
           V  +I ++  + L ++G    +  ++            G+          +      S+ 
Sbjct: 291 VALSIVDIDANNLSELGVDWQVGINTGPRHIIDITTSAGEKKEGKEKGESIGSAALGSLV 350

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                      +  LE   + + ++ PTL       A   +   +  K   +      + 
Sbjct: 351 DRRGLDYLLAKITLLESKGSAQVISRPTLLTQENTQAVIDNNETYYVKV--NGERVAELK 408

Query: 309 THDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPS 364
           +  YG +L   P V+  G    I L +  E        +    +P+      DT   +  
Sbjct: 409 SLTYGTMLRMIPRVIQVGDSPEISLDLHIEDGNQKPNSSGRDGIPTISRTVVDTVARVGH 468

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G ++++ G+ +D++ Q+   +P L  IP LG LFRN+      +       P L+ 
Sbjct: 469 GQSLLIGGIYRDEMSQITRKVPFLGDIPYLGVLFRNTSEQVRRSVRLFIIEPRLID 524


>gi|138047|sp|P03664|G4P_BPFD RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|8489183|gb|AAF75602.1|AF217317_5 morphogenetic protein IV [Filamentous phage cloning vector fd-tet]
 gi|215404|gb|AAA32312.1| IV [Enterobacteria phage fd]
 gi|8698959|gb|AAF78531.1| protein IV [Filamentous phage display vector fMCS1]
 gi|21667075|gb|AAM73892.1| morphogenetic protein IV [Filamentous phage display vector f8-5]
 gi|21667089|gb|AAM73904.1| morphogenetic protein IV [Filamentous phage display vector c8-4]
 gi|223541|prf||0812197E DNA,phage
          Length = 426

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/339 (18%), Positives = 120/339 (35%), Gaps = 33/339 (9%)

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
             + D + E   + ++             V   +D V     +  ++       + E F+
Sbjct: 96  PNSQDYIDELPSSDIQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFV 153

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDIL 210
             +        S     NLL ++                    DQ+ ++  I EV++   
Sbjct: 154 KSNTSKSSNVLSVDG-SNLLVVSAPKDILDNLPQFLSTVDLPTDQILIEGLIFEVQQGDA 212

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
               F       +     +          S GG F   G+ +       + AL+  +  +
Sbjct: 213 LDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSK 268

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVL 323
            L+ P +  +SGQ  S + G    + T   +           +V   + G+ +   P  +
Sbjct: 269 ILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTVERQNVGISMSVFPVAM 328

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + G I L I ++         A D+     R   TTV L  G T++L GL          
Sbjct: 329 AGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDS 387

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 388 GVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|166211|gb|AAA32218.1| protein IV [Enterobacteria phage f1]
 gi|58091841|gb|AAW65343.1| gene IV protein [synthetic construct]
 gi|58091857|gb|AAW65354.1| gene IV protein [synthetic construct]
 gi|153902269|dbj|BAF74211.1| protein IV [Enterobacteria phage f1]
 gi|262064184|gb|ACY07165.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
           N  ++G +   +   +   +  I  L  +  +             V   +D V     + 
Sbjct: 80  NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
            ++       + E F+  +        S     NLL ++                    D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  I EV++       F       +     +          S GG F   G+ +  
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
                + AL+  +  + L+ P +  +SGQ  S + G    + T   +           ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|297171846|gb|ADI22835.1| type II secretory pathway, component PulD [uncultured nuHF2 cluster
           bacterium HF0500_31B05]
          Length = 815

 Score =  147 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 59/287 (20%), Positives = 115/287 (40%), Gaps = 27/287 (9%)

Query: 174 NQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
           ++    + +K++N+L+   +    Q+ ++  + EV  + L+ IG + + + +    S   
Sbjct: 254 DKNEPEALEKLINVLHTQIDVPAQQIFIEALVIEVNTNRLRDIGVELTGSKNHVQGSFER 313

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
           +             FS +   D  S +  L AL        L+ P++  ++ + A    G
Sbjct: 314 SEGNPLT----TLLFSRESFTDFLSLKGKLEALVEIGDAEILSSPSVLVLNDRQARVQVG 369

Query: 291 GQHLYKTVSS---STGATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVIGVNA- 345
            Q      ++    T    +     G+VL+  P +     ++ ++I+T +S         
Sbjct: 370 RQIPIVRSTTPTAGTTVKGIEYFPIGIVLNLRPRINLDQSQVTIQIETIISSISTESATK 429

Query: 346 ---------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                       P    R  +T V +  G   ++ GLL  +  + K G+P LS +P LG 
Sbjct: 430 LEDGVSEDISFAPIVDNRLVETYVRVADGTPFIIGGLLSTERLESKVGVPFLSAVPFLGH 489

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
           LF   R    + E+ +  TP +V P+  R+ S     Y +  D+  F
Sbjct: 490 LFSRKRVENTQREVIVVITPHIV-PLETRNFS-----YLIPKDSDLF 530


>gi|89111142|dbj|BAE80232.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 112/295 (37%), Gaps = 18/295 (6%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
            T   + +A E    F +  G N           +  + +++ L+      V L+ TI E
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMAEYESLIHRLD-QKPQLVELEATIIE 456

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V  D +  +G   S+   +S  + +          S     S   +         ++ALE
Sbjct: 457 VNSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALE 510

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
                R L++P++  ++ ++A      + +     +     ++   + G +L  TP V +
Sbjct: 511 AQGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTA 568

Query: 325 -PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             G+  +++   + +     N    +P  +  +  T   +  G ++++ G+  +      
Sbjct: 569 VEGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQD 628

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
             +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 629 NAVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|238764026|ref|ZP_04624981.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
 gi|238697697|gb|EEP90459.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia kristensenii ATCC 33638]
          Length = 481

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 46/228 (20%), Positives = 89/228 (39%), Gaps = 10/228 (4%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              Q+ + VTI +V    + Q+G   S + S  G   SF +           +     + 
Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGE----PQNSANGFSTVIG 307

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   L+AL++ +  R L+ P++  ++   A          K          + +  
Sbjct: 308 DSGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESIT 365

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
            G +L  TP ++       + L +  +  +    +++ + +P  +     T   L  G +
Sbjct: 366 SGSLLRVTPRMIDADGVKEVLLNLNIQDGQQQASISSSEPLPEIQNSDISTQATLRVGQS 425

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++L G ++D   + +  IPLL  IP+LG LFRN+              
Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRNTNKQSHSVVRLFLIK 473


>gi|170766764|ref|ZP_02901217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|170124202|gb|EDS93133.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia albertii TW07627]
 gi|315617521|gb|EFU98127.1| conserved hypothetical protein [Escherichia coli 3431]
          Length = 512

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 49/247 (19%), Positives = 102/247 (41%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------AAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSP----------GRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L             R+ L           S+  I      +P  +  +  T
Sbjct: 386 TLLRVTPRILDDTPNSLTGKRRERVRLLLDIQDGNQSTSQSNIQDTGSLLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|27381133|ref|NP_772662.1| general secretion pathway protein D [Bradyrhizobium japonicum USDA
           110]
 gi|27354300|dbj|BAC51287.1| blr6022 [Bradyrhizobium japonicum USDA 110]
          Length = 793

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 123/331 (37%), Gaps = 34/331 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R              NQ +    ++ +  ++   + Q+ ++ TIAEV  +     G Q  
Sbjct: 471 RITADVTNNAVLVYANQESQRIVEQTIRQID-RPQRQIAIEATIAEVTLNDQLNYGVQFF 529

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGG-------------------DFSVKGVLDRFSFETV 259
           +       S + +       +                             +    S   V
Sbjct: 530 LASQKGSISNTISGVSNSATIGSNTEPASNAVNAAAGALLGRALPGFNFLIGAENSPRVV 589

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSVTTHDYG 313
           L AL   T ++ L+ P+L  +  Q+A+   G Q  + T +++      T   ++   + G
Sbjct: 590 LDALHGITNVKVLSNPSLVVLDNQAATLQVGDQVPFSTGTATVLTANNTVVNTIDYKNTG 649

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           ++L   P   + G + L I+ E+S    G      P+   R+  +++ + SG T++LAGL
Sbjct: 650 IILRVLPRANANGNVVLDIEQEISSVAAGSANSLTPTISQRRVKSSIAVTSGQTVLLAGL 709

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
           + +   + ++G+P+L  IP +G  F +    R  TE+ +   P ++K           D 
Sbjct: 710 ISETENRQRQGLPILDSIPGMGDAFSHQTTARARTELILFIRPTVIKDGV--------DA 761

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
           + + ++ +     R+     P          
Sbjct: 762 HVIAEEMRTKMNGRLVGTSNPVVTVSPPKAA 792


>gi|89111175|dbj|BAE80264.1| HrcC [Acidovorax avenae subsp. avenae]
          Length = 683

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
            T   + +A E    F +  G N          M+     I   DQ    V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             D +  +G   S+   +S  + +          S     S   +         ++ALE 
Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
               R L++P++  ++ ++A      + +     +     ++   + G +L  TP V + 
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569

Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+  +++   + +     N    +P  +  +  T   +  G ++++ G+  +       
Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|332159936|ref|YP_004296513.1| type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318607512|emb|CBY29010.1| secretion system apparatus SsaC [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664166|gb|ADZ40810.1| Type III secretion outer membrane pore, YscC/HrcC family [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 493

 Score =  147 bits (370), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 107/301 (35%), Gaps = 30/301 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++      + L+    S+         S+    N + I      
Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +      
Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +   D     + +  +F   L+AL++ +  R L+ P++  ++   A          K  
Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL- 365

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVR 354
                   + +   G +L  TP ++    +  + +   + +        ++  +P  +  
Sbjct: 366 -QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLNIQDGQQQAPLSSSEPLPEIQNS 424

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++             
Sbjct: 425 DISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTNKQSHSVVRLFLI 484

Query: 415 T 415
            
Sbjct: 485 K 485


>gi|326315361|ref|YP_004233033.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323372197|gb|ADX44466.1| type III secretion outer membrane pore, YscC/HrcC family
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 683

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 55/294 (18%), Positives = 110/294 (37%), Gaps = 16/294 (5%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQ----VTLKVTIAEV 205
            T   + +A E    F +  G N          M+     I   DQ    V L+ TI EV
Sbjct: 398 PTATAADKAEEAPPRFEADEGTNSVVVYGRADRMDEYESLIRRLDQKPQLVELEATIIEV 457

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
             D +  +G   S+   +S  + +          S     S   +         ++ALE 
Sbjct: 458 NSDSVDALGVNWSLRAGTSSIATNL------PGPSTPAALSTIVLDAGRHLLANVNALEA 511

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS- 324
               R L++P++  ++ ++A      + +     +     ++   + G +L  TP V + 
Sbjct: 512 QGKARILSKPSVLGVANRAAVM--REKRVATVRVAGNLEANLFQIEAGTLLQMTPQVTAV 569

Query: 325 PGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
            G+  +++   + +     N    +P  +  +  T   +  G ++++ G+  +       
Sbjct: 570 EGKNNIKLSLYIEDGAFETNVVDQIPLVKKTEIRTEAHVREGESLLIGGITVESENTQDN 629

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
            +P LSK+P++G +FRN+      TE     TP ++   A   +S         
Sbjct: 630 AVPGLSKLPVVGGVFRNTERLTRRTERLFLITPRVLAQDAPTTVSSISPEVRKP 683


>gi|46562147|ref|YP_009152.1| type III secretion system protein YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46447684|gb|AAS94350.1| type III secretion system protein, YscC family [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 624

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
                D         +    +A +   +      S  RV   + TV  L G         
Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228

Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
                    +QR  + S+     +   Q  +  +   +N + +                 
Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288

Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
               + V +   I ++  +  + +G  +  T             S+G  K       G  
Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQATVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G   S    +    F   ++ALE+    R L  P++  +    A+  +   +  +  
Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407

Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
                A  +   + G VL  TP       G   +++   V +                +P
Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      +  E
Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             I  TP +V+   + +L             +    +   +       S   G
Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576


>gi|17426227|ref|NP_510894.1| phage assembly protein [Enterobacteria phage M13]
 gi|138050|sp|P03665|G4P_BPM13 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14969|emb|CAA23865.1| phage assembly protein [Enterobacteria phage M13]
          Length = 426

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/237 (21%), Positives = 95/237 (40%), Gaps = 12/237 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            DQ+ ++  I EV++       F       +     +          S GG F   G+ +
Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
                  + AL+  +  + L+ P +  +SGQ  S + G    + T   +           
Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           ++   + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G
Sbjct: 311 TIERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            T++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|313891897|ref|ZP_07825499.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
 gi|313119672|gb|EFR42862.1| bacterial type II/III secretion system short domain protein
           [Dialister microaerophilus UPII 345-E]
          Length = 405

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +      T          A S  + ++  L+I  E QV ++  +  V R   K +G    
Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191

Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                           S  +K+        +       S+ G    F F+  L+AL    
Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325
             + LA+P +  ++G++A    G +         + T  TS+   D G+ L +TP V   
Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             I   I  EVS P + V          R+A TTV L SG  + + GL+  +       +
Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370

Query: 386 PLLSKIPILGALFR 399
           P+L  IPILG LF+
Sbjct: 371 PVLGDIPILGKLFQ 384


>gi|120586851|ref|YP_961196.1| YscC/HrcC family type III secretion outer membrane protein
           [Desulfovibrio vulgaris subsp. vulgaris DP4]
 gi|120564265|gb|ABM30008.1| type III secretion outer membrane pore, YscC/HrcC family
           [Desulfovibrio vulgaris DP4]
          Length = 624

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 62/413 (15%), Positives = 125/413 (30%), Gaps = 55/413 (13%)

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV-LHGM-------- 150
                D         +    +A +   +      S  RV   + TV  L G         
Sbjct: 169 YAWAEDITVNSMDKTVTLPGVASILRAMVSGSPSSATRVTQETATVDKLSGTGLISQGRQ 228

Query: 151 ---VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI----------------- 190
                    +QR  + S+     +   Q  +  +   +N + +                 
Sbjct: 229 QKESGQSNQAQRGGQASQQDSGGAQDGQQVSIMADPRVNAVIVHDAVYRMPYYESVIGDL 288

Query: 191 -AGEDQVTLKVTIAEVRRDILKQIGFQHSITGS-----------SSGPSKSFAADFGGKF 238
               + V +   I ++  +  + +G  +  T             S+G  K       G  
Sbjct: 289 DRPVELVEIHAAIVDIDTNFKRDLGVTYQGTVGKDQRWAGGADVSTGTDKFTPLPVPGVP 348

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              G   S    +    F   ++ALE+    R L  P++  +    A+  +   +  +  
Sbjct: 349 QGSGLTLSTIYTMGSDYFLARINALEKNGEARMLGRPSVLTVDNVQATLENTSTYYIQV- 407

Query: 299 SSSTGATSVTTHDYGVVLHFTPT--VLSPGRIGLRIQTEVSEPVIGVNA-------GDMP 349
                A  +   + G VL  TP       G   +++   V +                +P
Sbjct: 408 -QGYQAVDLFKVEAGTVLRVTPHIINNDDGTDAIKLVVSVQDDQNNQTTPTSTSTTQAIP 466

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             +  K +T   + +G ++++ G   +      +G+P+L  IP+LG LF+      +  E
Sbjct: 467 PIKQTKINTQAIIGAGQSLLIGGYYYEQKATSADGVPILMNIPVLGNLFKTQSKENKRME 526

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
             I  TP +V+   + +L             +    +   +       S   G
Sbjct: 527 RLILITPKVVR---LDNLPGTPPRVDDPAFHRTATQSDYAERTPTPPPSRRSG 576


>gi|261257910|ref|ZP_05950443.1| w0022 [Escherichia coli O157:H7 str. FRIK966]
          Length = 275

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 39/189 (20%), Positives = 78/189 (41%), Gaps = 7/189 (3%)

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            +      +     + ++  +L AL  ++    LA P++  +    A+F  G +    + 
Sbjct: 23  NALSMFNGIAAGFYQGNWAMLLTALSTSSKNDILATPSIVTLDNMEATFNVGQEVPVLSG 82

Query: 299 SSSTG----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSY 351
           S +T       +V     G+ L   P +     + L I+ EVS   +  +        ++
Sbjct: 83  SQTTSGDNIFNTVERKTVGIKLRVKPQINEGDSVLLEIEQEVSGVADTAVATTTDLGATF 142

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R     + + +G T+V+ GLL   I+  +  +PLL  IP+LG LFR       +  + 
Sbjct: 143 NTRTVTNAMLVGNGETVVVGGLLDKSIRGSESKVPLLGDIPVLGHLFRAKSEQTAKRNLM 202

Query: 412 IAATPFLVK 420
           +   P +++
Sbjct: 203 LFIRPTIIR 211


>gi|78777581|ref|YP_393896.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498121|gb|ABB44661.1| type II and III secretion system protein [Sulfurimonas
           denitrificans DSM 1251]
          Length = 563

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 52/285 (18%), Positives = 92/285 (32%), Gaps = 60/285 (21%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----------------------- 231
           QV + V +  V     K  G   S   +    + +F                        
Sbjct: 239 QVLIDVQLLSVTLSDGKTTGVDWSQLYNLQNMNLTFNKAKRTNVHGATWDSAYEGDTVEG 298

Query: 232 --------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
                                D  G          +  +   F+   ++  L+    + +
Sbjct: 299 LLLRDKRVEAAQSNIETYGLEDLAGVRTPVDATSKLLTISSNFTINNIIKFLKTQGDVSS 358

Query: 272 LAEPTLTAISGQSASFTSGGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTP 320
           ++ P +  ++ Q A  T+G ++ Y              S +T    + +   GV+L  TP
Sbjct: 359 ISNPKVLTLNNQPALITAGTEYFYKIISDSLSTAGTGGSVTTQNQDLQSVFAGVLLDITP 418

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLL 374
            +     I L+I   +SE    ++          P  R R+  + V L  G  I+L GL+
Sbjct: 419 EISDDNMITLKINPSLSETTTDISITPGVERTMPPDLRRRQLSSVVTLRDGERIILGGLI 478

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                     +P+L  IPIL  LF+     +   E+ I   P +V
Sbjct: 479 NTSNSIDVNKVPILGDIPILNYLFKYENRLKTTQELVIVIEPHIV 523


>gi|163786002|ref|ZP_02180450.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
 gi|159877862|gb|EDP71918.1| type II general secretion pathway (GSP) D protein [Flavobacteriales
           bacterium ALC-1]
          Length = 718

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 41/242 (16%), Positives = 83/242 (34%), Gaps = 18/242 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
           + ++V I E +     + G    +    +    S          ++  +  + G      
Sbjct: 476 ILIEVMIVEAQTSNTLEAGVTWGLGTEPATTEGSLFPTTDVTLGAQTINRIISGFSSTSV 535

Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------- 299
                   +F   + A+E    ++  + P L  ++G  ASF++G    Y  V        
Sbjct: 536 FNFGKVVPNFFATVKAMETNGDLKIKSTPKLATLNGHRASFSNGQTSYYAVVQRNTIGND 595

Query: 300 --SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              +T   +    D  + L   P V     + L I    S     +     P    R   
Sbjct: 596 NPQTTEIRNYFPVDAKLGLEIKPYVTGNKEVLLNINVVQSNFGQRIAEDAPPDINSRDFS 655

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + V +      VL GL ++       G+P L++IP++  LF        ++++ +   P 
Sbjct: 656 SVVRMKDQDIAVLGGLEENYSNNSGSGVPFLARIPLIKWLFSKRVREGRKSKLTVFIKPT 715

Query: 418 LV 419
           ++
Sbjct: 716 VI 717


>gi|281358092|ref|ZP_06244576.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281315465|gb|EFA99494.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 545

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 103/275 (37%), Gaps = 11/275 (4%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +     L E  +        A  + + +M  +++    Q+ ++  I EV      Q    
Sbjct: 124 ATLVEPLDEQNVLVLSGPSDAVENYRSIMLAMDVPSS-QILIEAKIVEVMFSDGMQRNLS 182

Query: 217 HSITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
            S      G   +     G     + G   + K +  + + +     L  A   + L+ P
Sbjct: 183 ISYAHKGRGSIGATTEVPGQSSQPTTGMGGNWKPIAGKDTLDIAFQWLLTAQDAKVLSSP 242

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--THDYGVVLHFTPTVLSPGRIGLRIQ 333
            +     + +   +G +   +  +S+    S++      GV L   P++++   + LR+ 
Sbjct: 243 NILISRNEVSRIVTGEEIPIQEANSTGNTLSLSTKFKSVGVTLEVEPSMINRDNVTLRVY 302

Query: 334 TEVSEP-------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            +VS           G  +  +P    R  +T + +     +++ GL   +    ++ +P
Sbjct: 303 PKVSNVIRYENVSAGGDTSYPVPVISARSVETYLRMQDKQVVMMGGLYSRNDSLSQQRVP 362

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +LS +P++G LF      +E T++       ++ P
Sbjct: 363 ILSDLPLIGELFTGKNLTKEVTQLIFFLKIHIISP 397


>gi|138046|sp|P03666|G4P_BPF1 RecName: Full=Virion export protein; AltName: Full=Gene 4 protein;
           Short=G4P; Flags: Precursor
 gi|14983|emb|CAA23875.1| unnamed protein product [Enterobacteria phage f1]
          Length = 426

 Score =  146 bits (369), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 53/237 (22%), Positives = 95/237 (40%), Gaps = 12/237 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
            DQ+ ++  I EV++       F       +     +          S GG F   G+ +
Sbjct: 195 TDQILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFN 250

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGAT 305
                  + AL+  +  + L+ P +  +SGQ  S + G    + T   +           
Sbjct: 251 GDVLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQ 310

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           +V   + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G
Sbjct: 311 TVERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDG 369

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
            T++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 370 QTLLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|225166011|ref|ZP_03727761.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
 gi|224799746|gb|EEG18225.1| Type II secretory pathway component PulD-like protein [Opitutaceae
           bacterium TAV2]
          Length = 693

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 129/396 (32%), Gaps = 78/396 (19%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
            + +             +E  +++F   S   ++   + +V  G                
Sbjct: 318 NQTVEQFVRDGAPQETGIEQAIKKFFTGSTYMIDYERNIIVATGT--------------- 362

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                    +    + + ++   +     QV ++     +     +Q+G        ++ 
Sbjct: 363 ---------RDQLRTLENIIREFD-RPVQQVLIEARFITISEAAFQQLGLNWETNRPTTS 412

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQ 283
              +         V  G + +  G+    S      L A+E++   +TL+ P LT I+ +
Sbjct: 413 ARSATDYTSIATTVGFGLEKTFTGIFGSNSDSLTATLTAIEQSGESQTLSAPRLTVINNR 472

Query: 284 SASFTSGGQHLYKTVSSST-------------GATSVTTHDYGVVLHFTPTVLSPGR-IG 329
            A+   G    Y      +              +   T    GV L    ++   GR I 
Sbjct: 473 PATIRDGKTQYYYEEYQVSQTILENRSTSSLVPSGKPTKLSAGVSLDVLASIGGDGRSIM 532

Query: 330 LRIQTEVSEPVIGVNAGDM-----------------PSYRVRKADTTVELPSGGTIVLAG 372
           L ++  VS+ V  V    +                 P  R ++  T V + SG T+V+ G
Sbjct: 533 LALKPSVSQDVELVTFATVSDLDSSGRVVSTFDIKLPQSRDQEISTRVIVQSGETVVMGG 592

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           ++++      E +P+L  IP LGALFR      +   + I  T  L+             
Sbjct: 593 VIENVQSTFTESVPVLGAIPYLGALFRTKTEVSKPRYLLIFVTATLL------------- 639

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
                 +   F   R N   G +E    + ++ +G 
Sbjct: 640 -----SETGEFV--RYNNAPGTEETPRTQRRSRRGT 668


>gi|215488986|ref|YP_002331417.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967940|ref|ZP_07782152.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|54311608|emb|CAG17523.1| EscC protein [Escherichia coli]
 gi|215267058|emb|CAS11503.1| T3SS structure protein EscC [Escherichia coli O127:H6 str.
           E2348/69]
 gi|221361489|emb|CAX18660.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|221361550|emb|CAX18740.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|312287501|gb|EFR15409.1| conserved hypothetical protein [Escherichia coli 2362-75]
 gi|320193805|gb|EFW68438.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli WV_060327]
 gi|320201526|gb|EFW76105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli EC4100B]
          Length = 512

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|15804236|ref|NP_290275.1| hypothetical protein Z5126 [Escherichia coli O157:H7 EDL933]
 gi|15833829|ref|NP_312602.1| EscC [Escherichia coli O157:H7 str. Sakai]
 gi|168748648|ref|ZP_02773670.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753525|ref|ZP_02778532.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759822|ref|ZP_02784829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766122|ref|ZP_02791129.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168772329|ref|ZP_02797336.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168779857|ref|ZP_02804864.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785590|ref|ZP_02810597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168798671|ref|ZP_02823678.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936258|ref|ZP_03081640.1| EscC [Escherichia coli O157:H7 str. EC4024]
 gi|208808738|ref|ZP_03251075.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812386|ref|ZP_03253715.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208819063|ref|ZP_03259383.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395836|ref|YP_002273173.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217325945|ref|ZP_03442029.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254795650|ref|YP_003080487.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|261225794|ref|ZP_05940075.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258839|ref|ZP_05951372.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285063|ref|YP_003501881.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|12518466|gb|AAG58839.1|AE005596_9 escC [Escherichia coli O157:H7 str. EDL933]
 gi|3414909|gb|AAC31520.1| L0041 [Escherichia coli]
 gi|13364050|dbj|BAB37998.1| type III secretion system EscC protein [Escherichia coli O157:H7
           str. Sakai]
 gi|187771452|gb|EDU35296.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188016923|gb|EDU55045.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189002416|gb|EDU71402.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358814|gb|EDU77233.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189364509|gb|EDU82928.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369868|gb|EDU88284.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189374516|gb|EDU92932.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189378854|gb|EDU97270.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195957526|gb|ACG59637.1| type III secretion system protein EscC [Escherichia coli O157:H7]
 gi|195957585|gb|ACG59695.1| type III secretion system protein EscC [Escherichia coli]
 gi|195957642|gb|ACG59751.1| EscC [Escherichia coli]
 gi|208728539|gb|EDZ78140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208733663|gb|EDZ82350.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208739186|gb|EDZ86868.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157236|gb|ACI34669.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217322166|gb|EEC30590.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254595050|gb|ACT74411.1| type III needle complex subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|255348323|gb|ACU09465.1| type III secretion outer membrane pore YscC/HrcC family
           [Escherichia coli]
 gi|290764936|gb|ADD58897.1| escC [Escherichia coli O55:H7 str. CB9615]
 gi|320191251|gb|EFW65901.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC1212]
 gi|320639365|gb|EFX08980.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. G5101]
 gi|320644809|gb|EFX13845.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. 493-89]
 gi|320650073|gb|EFX18569.1| outer membrane secretin SsaC [Escherichia coli O157:H- str. H 2687]
 gi|320655420|gb|EFX23355.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320661047|gb|EFX28483.1| outer membrane secretin SsaC [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666172|gb|EFX33178.1| outer membrane secretin SsaC [Escherichia coli O157:H7 str. LSU-61]
 gi|326337301|gb|EGD61136.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1044]
 gi|326341675|gb|EGD65464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. 1125]
          Length = 512

 Score =  146 bits (368), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|260869693|ref|YP_003236095.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|221361432|emb|CAX18585.1| Type III secretion system, LEE associated [Escherichia coli]
 gi|257766049|dbj|BAI37544.1| T3SS structure protein EscC [Escherichia coli O111:H- str. 11128]
 gi|323178902|gb|EFZ64478.1| hypothetical protein ECOK1180_2636 [Escherichia coli 1180]
          Length = 512

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|89897873|ref|YP_514983.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
 gi|89331245|dbj|BAE80838.1| general secretion pathway protein D [Chlamydophila felis Fe/C-56]
          Length = 755

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 97/255 (38%), Gaps = 5/255 (1%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    +Q G      G       S A  +    + E       G   
Sbjct: 463 KKMVRIEVLLFERKLSSQRQAGLNLLRLGEEVCKKTSSAVSWTSSGILEFLFKGSTGSSL 522

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             S++     L     +R  A P++  ++   A      +     VS+           Y
Sbjct: 523 VPSYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 581

Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           G+++   P +      G+  + ++T+++    G N  + P    R     V +P G T++
Sbjct: 582 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNTNERPDVTRRNITNKVRIPDGETVI 641

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           + GL        ++GIP L +IP +G LF  +  +  +TE+F+  TP ++  P   ++  
Sbjct: 642 IGGLRCKHASDSQDGIPFLGEIPGIGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKERQ 701

Query: 429 RPDDHYSVEDDAKAF 443
                 S   +   F
Sbjct: 702 EEAILSSRPGENAEF 716


>gi|150021613|ref|YP_001306967.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
 gi|149794134|gb|ABR31582.1| type II and III secretion system protein [Thermosipho melanesiensis
            BI429]
          Length = 1302

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/326 (15%), Positives = 113/326 (34%), Gaps = 34/326 (10%)

Query: 100  ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
            +L     K +      + +++  ++  +       N  V+  +  V+  G+    + +  
Sbjct: 1004 LLTSEGTKTINTFTFSVPKNVEKIQKLIE--FYGGNSFVDSAAGVVIATGI--DAKIAGE 1059

Query: 160  AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQH 217
                 E +L+                            ++V +   E    +   +G   
Sbjct: 1060 IRNYIEKYLNSKLA-----------------------LIEVRVVDEEFTNSLDLTLGELT 1096

Query: 218  SITGSSSGPSKSFAADFG-GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S  G+ S          G              G ++  + +            + LA P 
Sbjct: 1097 SNIGNLSKDGFDITLTLGEMSLEKIVEKLLSVGTVNELTLKLNGKINATDKDTKILASPN 1156

Query: 277  LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
            + A SG+ AS   G +      ++      +   + GV L  TP V +   I L +  +V
Sbjct: 1157 VVAKSGEKASILIGDKIPIVLTTAENT-QEIKYIESGVTLEITPFVNADNTIDLELNIKV 1215

Query: 337  SEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
            S     V       +P  R R+ ++ + L    T+++ GL +++  + +  +P+L  +PI
Sbjct: 1216 SSFDWDVKNVYGLTLPLERTREFNSKISLKENETLIIGGLTREENSKTESKVPILGDLPI 1275

Query: 394  LGALFRNSRFNREETEIFIAATPFLV 419
            +G  F+  + +  +  I I  +  +V
Sbjct: 1276 IGKFFKTEKNDLVKRNIIILISAKVV 1301


>gi|217076176|ref|YP_002333892.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
 gi|217036029|gb|ACJ74551.1| bacterial type II and III secretion system protein [Thermosipho
            africanus TCF52B]
          Length = 1318

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 47/232 (20%), Positives = 91/232 (39%), Gaps = 9/232 (3%)

Query: 197  TLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-FSVKGVLDR 253
             ++V +   E+  +    +G   S  G+ S    +         +    +     G    
Sbjct: 1088 LIEVKVVDEELSDNFEYNLGKITSDLGTLSNDDFNVKLSLSNLSIEGIINKLLSIGSDGN 1147

Query: 254  FSFETVLHALERATAIRT--LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             S    +      T   T  LA P + A SG++AS   G +      ++      +   +
Sbjct: 1148 SSLNIEIGNGNNVTNKNTNVLASPNVVAKSGETASILIGDKIPIVLSTAENT-QEIKYIE 1206

Query: 312  YGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTI 368
             GV L  TP + +   I L +  +VS          +  +P  R R+  + + L    T+
Sbjct: 1207 SGVTLEITPYINADNTIDLELNIKVSSFDWDLKSQYSLSLPVERTREFSSKILLKENQTL 1266

Query: 369  VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            V+ GL +++  +    IP+L  +PI+G  F + + ++ +  I I  +  +VK
Sbjct: 1267 VIGGLSREENSKTVSKIPILGDLPIIGKFFVSEKSDKVKRNIVIFISAKVVK 1318


>gi|148252838|ref|YP_001237423.1| general secretion pathway protein D [Bradyrhizobium sp. BTAi1]
 gi|146405011|gb|ABQ33517.1| General secretion pathway protein D [Bradyrhizobium sp. BTAi1]
          Length = 751

 Score =  146 bits (368), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 21/247 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS-------V 247
           QV +  TIAEV        G Q  ++    G      +    +  S     +       +
Sbjct: 471 QVGIDATIAEVTLTNELSYGVQAYLSSKVLGLGTDKGSITNTQTTSVATATTAAATSALI 530

Query: 248 KGVLDRFSF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
              L  F+F          +L AL   T+++ L+ P+L  I+ Q+A+   G      T S
Sbjct: 531 NRALPGFNFLIGHEASPNMILDALHTVTSVKVLSNPSLVVINNQTATLQVGDVVPVSTGS 590

Query: 300 ------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                 S+T   ++   + G++L   P + + G + L ++ E+S       A   P+   
Sbjct: 591 ATVLSSSNTVVNTIDYRNTGIILRVVPRIAANGNVRLEVEQEISNVAAQSAASLTPTVSQ 650

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RK  + + + +G T++LAGL+ +     + GIP   +IPILG  F +       TE+ I 
Sbjct: 651 RKVKSAISVANGQTVLLAGLISEQQNGNRNGIPGFDEIPILGDTFSHQDKKGTRTELIIF 710

Query: 414 ATPFLVK 420
             P +++
Sbjct: 711 IRPQIIR 717


>gi|262064173|gb|ACY07155.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  146 bits (368), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 65/355 (18%), Positives = 125/355 (35%), Gaps = 38/355 (10%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
           N  ++G +   +   +   +  I  L  +  +             V   +D V     + 
Sbjct: 80  NFDMVGSNPSIIQKYNPNNQDYIDELPSSDNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
            ++       + E F+  +        S     NLL ++                    D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSTPKDILDNLPQFLSTVDLPTD 196

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  I EV++       F       +     +          S GG F   G+ +  
Sbjct: 197 QILIEGLIFEVQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
                + AL+  +  + L+ P +  +SGQ  S + G    + T   +           ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGRNVPFITGRVTGESANVNNPFQTI 312

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++L GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|86130937|ref|ZP_01049536.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
 gi|85818348|gb|EAQ39508.1| general secretion pathway protein D [Dokdonia donghaensis MED134]
          Length = 728

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 42/243 (17%), Positives = 87/243 (35%), Gaps = 19/243 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD--- 252
           V ++V I EV ++     G +  I    S    +   +      +   +  +  +     
Sbjct: 485 VIIEVMILEVSKNSTLDAGIEWGIGQEPSVTQGNIFPNTNLSLGASTINRILGRIDGSSF 544

Query: 253 ------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----- 301
                   +F   + A E        + P +T ++G  A F++G    Y+   +      
Sbjct: 545 FNIGQVGPNFFATIRASETNGNFNIKSSPRITTLNGHRAYFSNGRTSYYEITQNQFVGVQ 604

Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
               + +      D  + L   P V   G + + I+   S      V     P    R+ 
Sbjct: 605 NPVVSESVDYVPIDAELSLEVLPFVSEDGEVTMDIKVIQSSFSGERVTENGPPEISSREF 664

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + ++  +   +VL GL +D       G+P L++IPI+  LF        ++++ +   P
Sbjct: 665 TSIIKSRTNDIVVLGGLEEDSKNNSGSGVPFLARIPIIKWLFSKRVRTASKSKLTVLIKP 724

Query: 417 FLV 419
            ++
Sbjct: 725 TVI 727


>gi|323153824|gb|EFZ40066.1| hypothetical protein ECEPECA14_4273 [Escherichia coli EPECa14]
          Length = 436

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 99/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   S +F +       +   + S   + + 
Sbjct: 198 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGSIAFNSS------TAQANLSSSVISNA 251

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 252 NNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 309

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 310 TLLRVTPRILDDNSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSILPEVQNSEMTT 369

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G LF ++   +             
Sbjct: 370 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGNLFSSTTKQKHSVVRLFLIKATP 429

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 430 IKSASSE 436


>gi|170700771|ref|ZP_02891764.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170134335|gb|EDT02670.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 244

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 47/194 (24%), Positives = 83/194 (42%), Gaps = 3/194 (1%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +   AA   G F +    F++         +  L ALE     + ++ P +       A
Sbjct: 21  NALDLAARPLGGFEAATAGFTLFAAPLSRVLDVELSALEAQGRGQIVSSPRVVTADRVKA 80

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
               G +  Y+      G + V      + L   P +   GR+ L +  +V++  IG   
Sbjct: 81  IVEQGSELPYQ-AKVGNGVSGVQFRRATLKLEVEPQITPDGRVVLDL--DVTKDSIGEPT 137

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
              P+   +   T VE+ +GGT+ + G+ +   +     +PLL KIP+LGALFR+     
Sbjct: 138 AAGPAIHTKHVQTRVEVENGGTVAIGGIYEQLNRDDVTRVPLLGKIPVLGALFRHRARRD 197

Query: 406 EETEIFIAATPFLV 419
           + +E+ +  TP +V
Sbjct: 198 QRSELVVFITPTVV 211


>gi|329121951|ref|ZP_08250564.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
 gi|327467397|gb|EGF12896.1| type II and III secretion system protein [Dialister micraerophilus
           DSM 19965]
          Length = 405

 Score =  146 bits (367), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 62/254 (24%), Positives = 98/254 (38%), Gaps = 15/254 (5%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +      T          A S  + ++  L+I  E QV ++  +  V R   K +G    
Sbjct: 133 QVASDVGTNSVIVNATPRAMSELEHIIKALDIP-EKQVKVEAEVLAVNRSYAKDLGIDWQ 191

Query: 219 IT-----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                           S  +K+        +       S+ G    F F+  L+AL    
Sbjct: 192 FKSLTGQAEQRNVYDKSSKTKTSYLKIPEDYAGISYGKSITGNPYTFFFQAKLNALLSDG 251

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS--SSTGATSVTTHDYGVVLHFTPTVLSP 325
             + LA+P +  ++G++A    G +         + T  TS+   D G+ L +TP V   
Sbjct: 252 KAKILAKPNVVTLNGRTAEILIGSKIPVLVEHMENGTKTTSIEYKDAGIKLTYTPNVSKN 311

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             I   I  EVS P + V          R+A TTV L SG  + + GL+  +       +
Sbjct: 312 SEITADIIAEVSTPYL-VPEMKAYRIVTRQAHTTVRLKSGDMLTIGGLIDKEEANNIRKV 370

Query: 386 PLLSKIPILGALFR 399
           P+L  IPILG LF+
Sbjct: 371 PVLGDIPILGKLFQ 384


>gi|261344599|ref|ZP_05972243.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rustigianii DSM 4541]
 gi|282567513|gb|EFB73048.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rustigianii DSM 4541]
          Length = 567

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 57/381 (14%), Positives = 121/381 (31%), Gaps = 34/381 (8%)

Query: 82  HSPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-N 135
            + R+  L G+     G  +V+  L    G  +     +    +   +  +   +     
Sbjct: 197 VTDRSYSLRGQTVTVPGMLSVMSSLFKSGGSTVEETLDIEPARLNSSDDDIDALMDAPIG 256

Query: 136 IRVEMVSDTVVLH--GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
                 +  VV+   G  ++              L   G  +      + V NL N    
Sbjct: 257 GSTNTNNRQVVIKRGGGAKSTFSL--VAHPDSNSLIVKGSPEQIRYVRELVKNLDN--RR 312

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L + I ++ R  L  +G    +    +G                   F+   + D 
Sbjct: 313 RQVELSLWIIDITRSELDNLGVNWEVGSFKAGGG--------------AISFNRSTLPDT 358

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   + AL +    + ++ P L       A F +      K         ++    YG
Sbjct: 359 SKFLVQIDALSKNGNSQIVSRPVLLTQENVPALFDNNTSFYAKL--QGERIATLEQVTYG 416

Query: 314 VVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            ++   P + +   + + +  E             N   +PS      +T   +    ++
Sbjct: 417 TMISVMPRISAGQSVEMEVNIEDGAENRDSSGKTSNVEGLPSVNRTSINTVARIAKNSSL 476

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
           ++ G  ++   + +  IPLL  IP +G LF ++  N+++        P L+      D  
Sbjct: 477 LIGGYTREQYVENESKIPLLGDIPWVGRLFSHTSTNQQKMVRIFLIQPRLLDENEAWDGR 536

Query: 429 RPDDHYSVEDDAKAFFFNRVN 449
           +  + + +  +  +     V 
Sbjct: 537 QFSESHRI-TEKDSQLHGTVQ 556


>gi|238785761|ref|ZP_04629734.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
 gi|238713344|gb|EEQ05383.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia bercovieri ATCC 43970]
          Length = 504

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 111/314 (35%), Gaps = 30/314 (9%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++   A  + L       +        S+    N + +      
Sbjct: 191 QYRDQQVKLPGLVSVLREMTMANNLPLVGGKGQTNSPISTPLFSADPRQNSIIVRDRQVN 250

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +  G   
Sbjct: 251 MPIYRSLIAQLDQRPIQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGSGSSG 310

Query: 239 VSEGGDFSVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             +        V+    +F   L+AL++ +  R L++P++  ++   A          K 
Sbjct: 311 TGKNSADGFSTVIGDTSNFMVRLNALQKNSRARVLSQPSVVTLNNIQAVLDKNVTFYTKL 370

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG---VNAGDMPSYRV 353
                    + +   G +L  TP ++   G   + +   + +        N+  +P  + 
Sbjct: 371 --QGDKVAKLESITSGSLLRVTPRMIDADGEKEVLLNLNIQDGQQQAPISNSEPLPEIQN 428

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
               T   L  G +++L G ++D   + +  IPLL  IP+LG LFR++            
Sbjct: 429 SDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTDKQSHSVVRLFL 488

Query: 414 ATPFLVKPVAMRDL 427
                  PV   +L
Sbjct: 489 IKAV---PVNTGEL 499


>gi|117926538|ref|YP_867155.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117610294|gb|ABK45749.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 830

 Score =  146 bits (367), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 60/328 (18%), Positives = 117/328 (35%), Gaps = 45/328 (13%)

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L                 V   G+V +I      + +  T         Y  S  +    
Sbjct: 252 LPSAAPGGTASPAKAEPKVTSSGVV-SINQETGVISIFATAADHERIGSYLESLMEN--- 307

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------SGPSKSFAADFGGK 237
                   QV ++ T+ EV      Q G   +                 S          
Sbjct: 308 -----AHRQVLIESTVVEVTLSDDHQQGVDWASINDDGLSRLSAPFFANSIGVNGGSRPM 362

Query: 238 FVSEGGDFSVKGVLDRF--SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
            +S+   FS+   ++       + + AL +    + L+ P + A++ Q+A        ++
Sbjct: 363 ALSDLPVFSLPTSINSGFGKITSTVRALAKFGNTKVLSSPKIMALNNQTAVLKVVDNTVF 422

Query: 296 KTVSSSTG---------------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
            TV +  G                T V T   G+V+  TP + +   + L ++  +S   
Sbjct: 423 FTVEAEAGSSANASGGTDTTALINTRVHTVPVGLVMSVTPQISADDVVTLNVRPTISSVS 482

Query: 341 IGVNAGD----------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             V+  +          +P  +V++ ++ + + SG   V+ GL++D I ++  G+PL+S+
Sbjct: 483 RWVSDPNPHLNAGVENLIPEIQVKEMESILRVHSGQITVMGGLMQDKISKVDTGLPLISQ 542

Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418
           +P +G LF        +TE+ I   P +
Sbjct: 543 VPGIGGLFGYKEKTVSKTELVIFMRPVV 570


>gi|83859862|ref|ZP_00953382.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852221|gb|EAP90075.1| General (type II) secretion pathway (GSP) D protein [Oceanicaulis
           alexandrii HTCC2633]
          Length = 622

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 70/353 (19%), Positives = 129/353 (36%), Gaps = 24/353 (6%)

Query: 85  RTMYLFGKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
             + +F KN     ++I      ++    + +    +  +  T    +A+    V   + 
Sbjct: 232 NQILVFAKNEDSLGHLIATARRLEEAAEHEDVTRSYVYQVRNTDAEELANIIRTVLGETG 291

Query: 144 TVVLHGMVRTIQDSQRAV-----ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQV 196
                G   T  ++  A       L+              +    +  LL        +V
Sbjct: 292 RSSSTGAETTAGETAGASSAVSSRLAVDTFGNRLIFTGNRNEYDNLARLLGQLDTPVSEV 351

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            ++VTIAEV      ++G +  +       +       G           +  ++D    
Sbjct: 352 LVEVTIAEVIFSDTTRLGVEFFL------NTLGGDVQVGTSDGLGLSSGGLSAIVDAGQL 405

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---------YKTVSSSTGATSV 307
           +    A    + I  L+ P + A SG+SA    G              +   S+    SV
Sbjct: 406 DIEAAARSTNSNINVLSTPRIVARSGESAEVQVGTDVPIITSQRAANTQDSGSTDILQSV 465

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-PVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +    GV+L   P V S  RI L I  EVS        A   P    R+  +++ L  G 
Sbjct: 466 SYRSTGVLLTVEPRVYSNNRIDLTIMQEVSSADDNPNQAIASPIISNRRMTSSITLQDGQ 525

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T VL GL+ + + +   G+PL+  IP+LG +F+   F+ ++  + +  TP+++
Sbjct: 526 TAVLGGLMSETVNRGSTGVPLVQDIPVLGNIFKTETFSNDQRVLLVLVTPYIL 578


>gi|170721649|ref|YP_001749337.1| type II and III secretion system protein [Pseudomonas putida W619]
 gi|169759652|gb|ACA72968.1| type II and III secretion system protein [Pseudomonas putida W619]
          Length = 625

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 66/458 (14%), Positives = 145/458 (31%), Gaps = 71/458 (15%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A + +    + +   I+   +K +   +      + V +    D        
Sbjct: 187 PVTLEFRDAELKVIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       ++  +   
Sbjct: 244 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +             
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVA------------- 345

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                       R  +  +G Q   T        +  +      + +    +   +    
Sbjct: 346 ------------RSRILDLGLQWPNTFGVLSDEGNPVS-----VLDQLRGINSGRISISP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A  +   I TLA P +   + + A    G +          +        SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF ++R +  ++E+ +A TP +V+ +   
Sbjct: 507 ETQVLAGLVRNDKTSSGNKIPGLGDIPGLGRLFGSNRDDMSKSELVLAITPRIVRNLP-- 564

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                   Y    D +       +            G 
Sbjct: 565 --------YQSPSDMEFATGTESSMQVRQLALPLPAGA 594


>gi|330969113|gb|EGH69179.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 700

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 97/288 (33%), Gaps = 17/288 (5%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           +V          G  R+   +  R                   +  +K++  L+++  + 
Sbjct: 262 QVLHYGGGSKSAGKSRSGGRANIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNL 320

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I ++ R+ L ++  + +    S           GG  + + G  S   + +   
Sbjct: 321 IEIDAVILDIDRNELAELSSRWNFNAGSVN---------GGANMFDAGTSSTLFIQNAGK 371

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   LHALE   +   +  P++  +  Q A               S    ++     G  
Sbjct: 372 FAAELHALEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTS 429

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L  TP  L      ++ L +  E  +  I       PS R     T   +   G++V+ G
Sbjct: 430 LQVTPRSLDHDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGG 489

Query: 373 LLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
               +       +PLL  IP +G  LF++      + E     TP L+
Sbjct: 490 FHGLEANDKVHKVPLLGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 537


>gi|170698575|ref|ZP_02889644.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
 gi|170136509|gb|EDT04768.1| type II and III secretion system protein [Burkholderia ambifaria
           IOP40-10]
          Length = 783

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/426 (19%), Positives = 158/426 (37%), Gaps = 44/426 (10%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
           +  +  +     + P   E     I      + +   +S  L+K I    P     V   
Sbjct: 183 ATMVLPALNQSLQKPVTLELKDVDIRSVLSILTQTSGVSFVLDKDI---SPDLRATVYAR 239

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAH-----LEM 125
           D +  D +    +T  L  K +    +++     ++    D  ++    +       ++ 
Sbjct: 240 DTSVIDALNLILQTSQLERKVLNDTTMLIYPSTEEKKKRYDDLVVRSYYLNSADPQKVQD 299

Query: 126 TLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM 185
            LR  +A  ++ V+     +V+     T       V L                     +
Sbjct: 300 MLRTIVAPKSMYVDGRLKMLVVR---DTETVQDTIVRL---------------------L 335

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           NL +IA  + V L V + EV    L  +G Q   + S+     +  A        +  + 
Sbjct: 336 NLYDIASPE-VILDVEVLEVNSSDLLNLGIQFPDSVSARMVGPAGVAGSMTIGDLKHLNR 394

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
               +        VL+  + + + RTLA P +  ++ + AS   G +    T + +  + 
Sbjct: 395 DSFPLSFPDPL-AVLNLRQTSGSTRTLANPRIRVVNHEKASVLIGDKVPVITSTVNQTSN 453

Query: 306 SVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKAD 357
           ++T      D G+ L   P +     + +++  EVS  V                 R A+
Sbjct: 454 AITESVNYLDVGLKLEVEPEIHVDNDVTMKVALEVSNIVKEVRSSATGLLAYQIGTRNAN 513

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + L  G T  LAGL+K+D Q+    +P L +IP+LG LF N+R     +EI +  TP 
Sbjct: 514 TVLRLHEGETQALAGLIKNDTQESGTHVPGLGRIPVLGRLFSNNRDTATRSEIVLLITPH 573

Query: 418 LVKPVA 423
           + + +A
Sbjct: 574 IARSLA 579


>gi|6016255|sp|Q01723|HRPH_PSESY RecName: Full=Hypersensitivity response secretion protein hrpH;
           Flags: Precursor
 gi|2934881|gb|AAC05014.1| envelope protein [Pseudomonas syringae]
 gi|148746178|gb|AAB05085.2| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 286 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 344

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S           GG  + + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 345 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 395

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L  TP  L      ++ L +  E
Sbjct: 396 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 453

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G
Sbjct: 454 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 513

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 514 KLLFQSRSRELSQRERLFILTPRLI 538


>gi|225874165|ref|YP_002755624.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225794395|gb|ACO34485.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 583

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/488 (15%), Positives = 150/488 (30%), Gaps = 76/488 (15%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VIILQVPVDVQD 68
           +    S +       P+         ++   +   K I + + K     ++         
Sbjct: 137 ASTAPSGSAENMPESPVDLDIPVAGPVTLHMLADSKVIYLTIGKLLGINVLFDPSSSSNR 196

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQ-----ANVILIGHDG-------------KQML 110
           + V           +     + GK  G       +  +                  +   
Sbjct: 197 IQVDLSNVTPYQALN-----IVGKVSGTFWQPVTHNTIFVAQNTPAKRKEYSNQALEVFY 251

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
             ++    D   ++  LR     + I     +DT+V+ G           + L++  ++ 
Sbjct: 252 VGNVSQASDFTGIQTALRNVFQSARIFGIESNDTIVMLGTPDE-------LRLAKMLIAS 304

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                                 + +V + VT+ EV RD +++IG        S   S + 
Sbjct: 305 LDEP------------------KPEVLVDVTVMEVSRDKMREIGL-------SPPTSLTV 339

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            +         G   +    +     +     L   +  + L  P L A++G+ AS   G
Sbjct: 340 NSGSSQTLEQIGHTSAYSITIG----QAAADFLLTDSNTQILQNPRLRALNGEQASLKLG 395

Query: 291 GQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
            +    T S +           T     D GV +  TP +     + L++  +VS     
Sbjct: 396 ERLPVATGSYTYATGSTSAAAETQFQYLDVGVNIDMTPQIHLDHTVTLKLGVDVSSENGT 455

Query: 343 VN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            +    + P     KA   V L +G + +LAGLLK ++ Q   G P   +IP +  LF  
Sbjct: 456 EDLEGVEEPIISQEKAQQIVRLKNGESTILAGLLKKEVSQTVSGWPGFGEIPFMKYLFTT 515

Query: 401 SRFNREETEIFIAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            +      E+    TP +++   V    +   D   +     +     ++N     K  +
Sbjct: 516 QKHEVTSDELVFMITPHIIRSPQVDPLTMREIDTGTADMIQLRE-PPGQLNSSLAAKPKA 574

Query: 459 EVEGQNYK 466
                   
Sbjct: 575 ASSQAASH 582


>gi|227114189|ref|ZP_03827845.1| type III secretion protein [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 689

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 62/435 (14%), Positives = 131/435 (30%), Gaps = 57/435 (13%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G    I +  N     +   + + V++     A V   +     + + +     G A +
Sbjct: 169 TGPQAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKVTI----PGVATI 224

Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFI--------ADSNIRVEMVSDTV 145
           +  L+             + +  +  +  +  + R  +           N         V
Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDNGMEAMRESTRSLMTRLATRNNPGRNGEAS---GRV 281

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G +                      ++   +  +++++ +++     V +   I +V
Sbjct: 282 TLSGKISAD---------VRNNALLIRDDEKRRAEYQQLVDHIDVPQNL-VNIDAIILDV 331

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
            R  L ++         +     +        FVS           D   F   + ALE 
Sbjct: 332 DRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEG 380

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
                 +A P++  +  Q A                     +     G  L  TP V+  
Sbjct: 381 EGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGE 438

Query: 326 G-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           G +  +++  ++ +  +        S   R    T   +     +VL G   ++      
Sbjct: 439 GAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDR 498

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            IP+L  IP+LG LF ++R      E     TP LV      D + P  + S  +  +  
Sbjct: 499 RIPILGDIPLLGQLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSANRQQ-- 551

Query: 444 FFNRVNKIYGPKEAS 458
               +N++      +
Sbjct: 552 LNGAMNRVAQRNGKT 566


>gi|163757297|ref|ZP_02164392.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
 gi|161322754|gb|EDP94108.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
          Length = 721

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 90/242 (37%), Gaps = 18/242 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V + +V +  + + G    I    +  S S          +   +  + G     S
Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538

Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY---------KT 297
           F            + A+E+   I+  + P ++ ++G  A+ ++G    Y           
Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRNIYGTN 598

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
              ++  T+    D  + +   P V   G++ L I    S     ++    P    R+  
Sbjct: 599 NPQTSEITNYYPIDAELGISIKPIVSGDGQVTLDIFVIQSTFGSRISEDAPPDISSREFR 658

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           + + +      VL G+ +   +    G+P L++IP++   F   +    ++++ +   P 
Sbjct: 659 SIIRMRDQDIAVLGGIEEKQKRDEGNGVPFLARIPVIKWFFSKRKRQDSKSKLTVLIKPT 718

Query: 418 LV 419
           ++
Sbjct: 719 VI 720


>gi|9630770|ref|NP_047372.1| putative maturation protein [Vibrio phage fs2]
 gi|3702216|dbj|BAA33484.1| unnamed protein product [Vibrio phage fs2]
          Length = 500

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 143/397 (36%), Gaps = 25/397 (6%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD-PTKADVVVHSPR 85
               E++   I        +   I + L + ++  V     D++ ++ P   D  V    
Sbjct: 65  AAPFESSDTPIAEFASWYSQQTGIKVVLGQGVLGSVSFTAPDLVPAEYPAFFD-SVLRAH 123

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
             YL     G A VI I  + K+++   I+      ++  +    +  S ++        
Sbjct: 124 GYYLV--KDGNAYVIKIAPEAKEVITPAIVKLYRFNYIRNSKLSDLVQSTLKATS----- 176

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
                V+  Q    +VE+     +              V+       + Q+ ++  I E 
Sbjct: 177 --SEFVKDKQVDNYSVEILPNTNALIVSGTAQQLEKLDVLLSAIDVPQRQIFIEAVITET 234

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
                 ++G                 A F    V+         + +   F  ++ A+  
Sbjct: 235 ELGDNSELGVNLQAAFDK--------AGFVTNLVNASKLKDNLFIFESGDFNALVKAISG 286

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVTTHDYGVVLHFTPT 321
           ++  R L+ P +  +  +    T G    +   +S+T        +   D GV L  TP 
Sbjct: 287 SSDTRLLSRPNILIMDRERGYITVGQNVPFLVSNSTTDGGTSVQRIERKDVGVSLEVTPH 346

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           V+    I L I  E S       A D+     R   TTV + SG TIVL GL+ D+ + +
Sbjct: 347 VMGDDVI-LVINQESSSVTDSTIAADI-ITNKRTLMTTVAVKSGQTIVLGGLISDEKRNV 404

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + G+P+L   P++G LFR++     + E+ +     +
Sbjct: 405 ESGVPVLKDTPLIGGLFRSTSTKNVQKELRVVIKSTV 441


>gi|30249573|ref|NP_841643.1| general (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
 gi|30138936|emb|CAD85515.1| General (type II) secretion pathway (GSP) D protein [Nitrosomonas
           europaea ATCC 19718]
          Length = 763

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 84/422 (19%), Positives = 145/422 (34%), Gaps = 59/422 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E     +      I +   I+   ++ +          + V D +  DV       
Sbjct: 186 PITMEFRDTSLKTMFELISRTAGINFVFDRNVQ---QEATASIFVRDNSIEDVLKLMLLT 242

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 V +  T+ ++     +          + ++    +   D+  +   +R  +   
Sbjct: 243 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 297

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I V    +  V+   +         + L E  ++ +                       
Sbjct: 298 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 333

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            V L V + EV+RD    +G     + + S  P     A      V +       G    
Sbjct: 334 -VMLDVVVLEVKRDSTLDLGPNMPTSVTFSAVPGIGTPAQAAADSVVKMSMIKNTGFEGL 392

Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
            SF       +      T    LA P +   S + A    G +    TV+++     A S
Sbjct: 393 RSFTISNQARIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 452

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360
            T  D G+     P V +   + L+   EVS          G NA        R A+T +
Sbjct: 453 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGSGENAATAIVIGTRTAETVL 512

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G T VLAGL++DD+ +++ GI  L+ IP+LG +F        +TEI +  TP +V+
Sbjct: 513 ELRDGETQVLAGLIQDDLSRVRSGIAGLTDIPVLGDIFSKQVRKHNKTEIILLITPHIVR 572

Query: 421 PV 422
            V
Sbjct: 573 NV 574


>gi|66044451|ref|YP_234292.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
 gi|63255158|gb|AAY36254.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae B728a]
          Length = 700

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 285 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 343

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S           GG  + + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 344 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 394

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L  TP  L      ++ L +  E
Sbjct: 395 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 452

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G
Sbjct: 453 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPLLGDIPYIG 512

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 513 KLLFQSRSRELSQRERLFILTPRLI 537


>gi|319786555|ref|YP_004146030.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465067|gb|ADV26799.1| general secretion pathway protein D [Pseudoxanthomonas suwonensis
           11-1]
          Length = 711

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 55/291 (18%), Positives = 105/291 (36%), Gaps = 44/291 (15%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +     + ++V+  L++   +QV ++  + E+  D  +++G Q  + G           
Sbjct: 348 ADPDTQRTLQEVIRQLDVR-REQVLVEALVVEISDDAARKLGTQLLLAGKDGTVPAGMTQ 406

Query: 233 DFGGKFVSEGGDFSVKGVLDRFS------------------------------------- 255
                         V     R                                       
Sbjct: 407 FGNAGPGMAALAGGVLASRGRGGDDDDDGAADAIREAAAQSLLGLSGGLLGIGGQSKDRL 466

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTH 310
           F  +++A+        L+ P++  +  + A    G +    T      +++    ++   
Sbjct: 467 FGIIINAVRSDARSNVLSTPSILTLDNEEAHILVGEEVPVTTGEVLSNNNNNPFRTIDRQ 526

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
           D GV L   P + S G I L I+ EVS     V+ + D      R+ +T V +  G  I 
Sbjct: 527 DVGVRLTVRPQINSGGGITLAIRQEVSSVSGTVSRSSDELVLNKREIETNVVVDDGAMIA 586

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           L GLL       ++ +PLL  IP+LGALFR++  +   T + +   P +++
Sbjct: 587 LGGLLDHTSSDRRDKVPLLGDIPVLGALFRSTSRSSTRTNLMVFLRPTVIR 637


>gi|323957549|gb|EGB53264.1| general secretion pathway protein D [Escherichia coli H263]
          Length = 615

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 104/300 (34%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q     +                                S   + +   D  
Sbjct: 375 GSNINFGVQWGSKDAGLMQFANGTQIPIGTLGAAISAAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPVIGNLFKSTADKKE 612


>gi|299139665|ref|ZP_07032838.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298598289|gb|EFI54454.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 838

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/415 (17%), Positives = 136/415 (32%), Gaps = 52/415 (12%)

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI-ADSNI 136
               +P T+ +      +     +     Q+  L     + D   + + LR  +     I
Sbjct: 263 YKPLTPNTILV--AQNSRTKRTDLDQLACQIFYLTSPDQQNDANEILIALRNMLDPAIKI 320

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
            +    D +VL G    +  +                         K++N L+   + +V
Sbjct: 321 YLVSTQDAIVLRGTPDELMLA------------------------GKLINDLD-REKPEV 355

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGS------------SSGPSKSFAADFGGKFVSEGGD 244
            + V + EV +D  + +G     + S            ++  + +  +     F      
Sbjct: 356 VIDVAVMEVDKDKTRTLGITLPQSFSLTPQASSSNNNNAANNNSNSGSQSSSSFTLNTLA 415

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG- 303
            +             ++AL + T  R L  P L A  GQ A+   G +    + S S+  
Sbjct: 416 NTNATNFAVTVTGGTVNALLQDTNTRILQNPRLRATDGQKATLKIGQRVPIASGSLSSPV 475

Query: 304 --------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRV 353
                    T  T  D G  +  TP V S G + L+++ EVS+      ++    P    
Sbjct: 476 GGVSSLGVQTQFTYVDVGTNMDITPAVHSDGSVSLKMKVEVSQVDTYDTISGVQEPVIGQ 535

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +  + T++L  G   +LAGL+         G P L ++P+L  LF       +  EI   
Sbjct: 536 KVLEQTIKLRDGEPSILAGLVTKQDSVAGSGTPGLGELPVLKYLFGTQTKTLQNDEIVFL 595

Query: 414 ATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGA 468
             P +++   ++ L+         +  +    +          A         G 
Sbjct: 596 LVPHIIRETLLQKLNLRAIDTGTANVVELRRLSTGEDSSAFAPAVRKPADRDVGP 650


>gi|238787451|ref|ZP_04631249.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
 gi|238724238|gb|EEQ15880.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia frederiksenii ATCC 33641]
          Length = 481

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 88/228 (38%), Gaps = 10/228 (4%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              Q+ + VTI +V    + Q+G   S + S  G   SF +           D     + 
Sbjct: 252 RPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGISFNSGN----AKSNADGFSTVIG 307

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           D  +F   L+AL++ +  R L+ P++  ++   A          K          + +  
Sbjct: 308 DTGNFMVRLNALQKNSRARVLSRPSVVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESVT 365

Query: 312 YGVVLHFTPTVLSPGRIG-LRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGT 367
            G +L  TP +++   +  + +   + +        ++  +P  +     T   L  G +
Sbjct: 366 SGSLLRVTPRMINSDGVKEVMLNLNIQDGQQQAPISSSEPLPEIQNSDISTQATLRVGQS 425

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++L G ++D   + +  IPLL  IP+LG LFR++              
Sbjct: 426 LLLGGFIQDKQIESQNKIPLLGDIPLLGGLFRSTEKQSHSVVRLFLIK 473


>gi|193070395|ref|ZP_03051337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
 gi|192956334|gb|EDV86795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli E110019]
          Length = 512

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQANISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLESITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDGSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|304415496|ref|ZP_07396135.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
 gi|304282655|gb|EFL91179.1| type III outer membrane secretin precursor [Candidatus Regiella
           insecticola LSR1]
          Length = 493

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 116/305 (38%), Gaps = 21/305 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRN 174
           E  +  L   LR   A + + V   +   + +  +   +    Q AV + +         
Sbjct: 196 EVQLPGLVTVLREMSAGNTLPVNTANGGKIENTSLPLFSADPRQNAVVVRDR-------- 247

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
           Q      K ++N L++     + + VTI +V    + Q+G   + + S +G   SF +  
Sbjct: 248 QANMPIYKSLINQLDLRPIG-IEISVTIIDVDAGNINQLGIDWTSSTSLAGNKVSFRSGL 306

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               +    D     + D  +F   L AL++ +  R L+ P++  ++   A         
Sbjct: 307 ----IPGSNDSFSSVIGDTDNFMVRLKALQQNSRARVLSRPSVVTLNNIPAVLDKNITFY 362

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTV-LSPGRIGLRIQTEVSEPVIGVNAGD---MPS 350
            K          + +   G +L  TP +    GR  + +   + + V   +      +P 
Sbjct: 363 TKL--QGDKVAKLESITSGSLLRVTPRMINDNGRHEVLLNLNIKDGVQKSSNNATEPLPQ 420

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            +  +  T   L  G +++L G ++D   + ++ +P L  IP++G LFR++  +      
Sbjct: 421 VQDSQISTQATLKIGQSLLLGGFIQDRQSEAEKKVPFLGDIPVIGELFRSTDKHSHSVVR 480

Query: 411 FIAAT 415
                
Sbjct: 481 LFLIK 485


>gi|257454916|ref|ZP_05620164.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
 gi|257447626|gb|EEV22621.1| fimbrial assembly protein PilQ [Enhydrobacter aerosaccus SK60]
          Length = 776

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 55/293 (18%), Positives = 104/293 (35%), Gaps = 42/293 (14%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + T            S+ + +++ ++IA + QV ++  I        K++G +  I    
Sbjct: 482 ARTNTLIVKDTAETISNIRDLISKIDIAVK-QVMIEARIVSATDTFSKELGVKWGILSQG 540

Query: 224 SGPSKSFAADFG-------------------------------------GKFVSEGGDFS 246
           +  +++                                           G   + G    
Sbjct: 541 AASNRNLLVGGNLSTIDSLKTYTTATNSDGTTYPVYSGITAANNLSVNLGATNAAGSIAF 600

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               +     +  L A++       ++ P +     Q+A   SG Q  Y+   S++GATS
Sbjct: 601 GLLSISDLLLDLELSAMQADNKGEVISSPKVLTADKQTARIMSGTQIPYQEA-SASGATS 659

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            +  +  + L  TP +   GRIG+ +  E   P I        +       T V +  G 
Sbjct: 660 TSFVEAALSLEVTPNITPEGRIGMDLSIENGSPTI---VNGATAISKDSIKTNVVVDDGQ 716

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+VL G+ K+ +      IP L  +P +   F+ +  +  + E+ I  TP LV
Sbjct: 717 TVVLGGVFKNTLGNDVTKIPFLGDLPYVDRFFKRTSKSNNKQELLIFVTPKLV 769


>gi|330815113|ref|YP_004358818.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
 gi|327367506|gb|AEA58862.1| secretion type II protein gspD [Burkholderia gladioli BSR3]
          Length = 847

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 66/391 (16%), Positives = 143/391 (36%), Gaps = 40/391 (10%)

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
           DV      T++L    +      ++  +G     LD        +    L+ +   +   
Sbjct: 228 DVKTDQRTTIFLKNSTIDATVRYVLATNGLAQQVLDENTVLIYPNTPAKLKDYQELAVRT 287

Query: 138 VEMVS-DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
             + + +   +   ++TI   +  V   +  +        A   ++++++L ++   + V
Sbjct: 288 FFLSNTEAKTIANTLKTILKVRDVVADEKLNMVIVRDTPDAIRMAERLVSLEDVPEPE-V 346

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------- 246
            L+V + EV+R+    +G     + + +               +                
Sbjct: 347 MLEVEVLEVQRNNELNLGVAWPGSVNVTPLPLGSVIAPVTGQNTNTNTPYYPYGYGGGFG 406

Query: 247 ----------------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                                     +   S +  ++A  + + ++ L  P +   + + 
Sbjct: 407 GGFGGGSNGTSPALTMNDLLHQTVRTIGLSSLQATVNANVQDSTVKLLTNPRIRVRNHEK 466

Query: 285 ASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           A    G +    T ++++    + SV   D G+ L+  PTV     +G+++  EVS    
Sbjct: 467 AKILIGERVPNFTSTATSTGFLSQSVNYLDIGLTLNVEPTVYLDDTVGIKLALEVSSLGN 526

Query: 342 GVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +             R A T ++L +G T VLAGL+ ++ +     +P L ++P+LG LF
Sbjct: 527 TITTTTGTAAYQIGTRTASTVLQLKNGETDVLAGLIDNEERTSGNKLPGLGQLPVLGRLF 586

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSR 429
             +    + TEI +A TP LV+ +   D   
Sbjct: 587 GATDDQAKNTEIVLAITPHLVRNIRRPDADL 617


>gi|254000203|ref|YP_003052266.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
 gi|253986882|gb|ACT51739.1| type IV pilus secretin PilQ [Methylovorus sp. SIP3-4]
          Length = 714

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/283 (19%), Positives = 103/283 (36%), Gaps = 48/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  +I  + QV ++  +        K +G +  +T  S+          G +    
Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488

Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262
             D ++       + +T                       +A                  
Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548

Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
                LE     + ++ P +T  + + A    G +  Y    SS+GATSV   D  + L 
Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP V    +I + +   + +  +G     +PS   +  DT V + +G T VL G+ +  
Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +   + +P    IP LG  F+      ++TE+ I  TP ++ 
Sbjct: 666 ERNDVDKVPFFGDIPFLGNAFKRRVKQNDKTELLIFITPKIMD 708


>gi|156973989|ref|YP_001444896.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
 gi|156525583|gb|ABU70669.1| hypothetical protein VIBHAR_01700 [Vibrio harveyi ATCC BAA-1116]
          Length = 623

 Score =  145 bits (365), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)

Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
           VL G V+T   + +  E      + T       +  A+  ++  +N + +          
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280

Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
                     Q  ++V  +I ++  + L Q+G            S       G   G  V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   + K +LD  +       +  LE   + + ++ PTL       A   +      K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYIK 400

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
            +   T A  +    YG +L   P ++         I L +  E    +      D+PS 
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T   
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518

Query: 412 IAATPFLV 419
               P +V
Sbjct: 519 FIIEPRIV 526


>gi|188532685|ref|YP_001906482.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
 gi|188027727|emb|CAO95580.1| HrcC protein (hrp cluster) [Erwinia tasmaniensis Et1/99]
          Length = 676

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 71/472 (15%), Positives = 139/472 (29%), Gaps = 40/472 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSD- 73
            L        +    +  +  V+ +     G  + + +        +   D + V+    
Sbjct: 128 ALSGIGLLDPRFGWGELPDDGVVLV----TGPPQYLELIKRFSEQREKKEDRRKVMTFPL 183

Query: 74  --PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT--LRR 129
              + AD  +       +     G A ++    +GK+            A    T  + +
Sbjct: 184 RYASVADRTIRYRDQTVVI---PGVATMLNELMNGKRPAPASASGSDGTAGAPDTGSMMQ 240

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
                  R+   + T    G   +  D   +  +S    + +   +  +    +   L+ 
Sbjct: 241 NTQSLLSRLSSRNKTPGRAGDRDSGID-DLSGRISADVRNNALLIRDDDKRRDEYSQLIG 299

Query: 190 IAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                Q  V +   I ++ R  L ++      T        S  +  G  FVS       
Sbjct: 300 KIDVPQNLVEIDAVILDIDRTALNRLEANWQATLGGVTGGSSLMSGSGTLFVS------- 352

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
               D   F   + ALE       +A P++  +  Q A                     +
Sbjct: 353 ----DFKRFFADIQALEGEGTASIVANPSVLTLENQPAVIDFSQTAYITAT--GERVADI 406

Query: 308 TTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSG 365
                G  L  TP  +   G   +++  ++ +  +  N     +   R    T   +   
Sbjct: 407 QPVTAGTSLQVTPRAVGYEGHSSIQLMIDIEDGHVQTNGDGQATGVKRGTVSTQALIGEN 466

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G   ++       IPLL  IP +G LF ++R    + +     TP L+      
Sbjct: 467 RALVLGGFHVEESGDRDRRIPLLGDIPWIGKLFTSTRHEISQRQRLFILTPRLIGDQTDP 526

Query: 426 DLSRPDDHYSVEDDAKAFFFNRVNKIYGP------KEASEVEGQNYKGAIGF 471
                 D+     DA      RV + +         E +  +    +   GF
Sbjct: 527 TRYVTADNRQQLSDA----MGRVERRHSNVNQHDVVENALRDLAEGQSPAGF 574


>gi|330975856|gb|EGH75922.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 702

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 287 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 345

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S     +           + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 346 FNAGSVNGGANMF---------DAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 396

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L  TP  L      ++ L +  E
Sbjct: 397 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 454

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G
Sbjct: 455 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 514

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 515 KLLFQSRSRELSQRERLFILTPRLI 539


>gi|153832481|ref|ZP_01985148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
 gi|148871276|gb|EDL70148.1| type III secretion outer membrane pore, YscC/HrcC family [Vibrio
           harveyi HY01]
          Length = 623

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 112/308 (36%), Gaps = 37/308 (12%)

Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
           VL G V+T   + +  E      + T       +  A+  ++  +N + +          
Sbjct: 222 VLSG-VQTQIKATKESEETDINAAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280

Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
                     Q  ++V  +I ++  + L Q+G         +  S       G   G  V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVANNSILDIKTTGDVDGGDV 340

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   + K +LD  +       +  LE   + + ++ PTL       A   +      K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
            +   T A  +    YG +L   P ++         I L +  E    +      D+PS 
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T   
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518

Query: 412 IAATPFLV 419
               P +V
Sbjct: 519 FIIEPRIV 526


>gi|255349063|ref|ZP_05381070.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70]
 gi|255503601|ref|ZP_05381991.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 70s]
 gi|255507281|ref|ZP_05382920.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis D(s)2923]
 gi|296439006|gb|ADH21159.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/11023]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|15605407|ref|NP_220193.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis D/UW-3/CX]
 gi|3329125|gb|AAC68269.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydia trachomatis D/UW-3/CX]
 gi|297748805|gb|ADI51351.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749685|gb|ADI52363.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|255311500|ref|ZP_05354070.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276]
 gi|255317802|ref|ZP_05359048.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis 6276s]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|149178109|ref|ZP_01856704.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
 gi|148843029|gb|EDL57397.1| general secretion pathway protein D (Precursor) [Planctomyces maris
            DSM 8797]
          Length = 1307

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/390 (15%), Positives = 133/390 (34%), Gaps = 41/390 (10%)

Query: 57   VIILQVPVDVQDVLVS-DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115
             + +   +D Q  L++ DP          R + +  + +          +   +++    
Sbjct: 841  SVAINEFLDTQRALIAQDPDLISSFELLEREVIVVPEAI----------NNNLIISATPR 890

Query: 116  IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
                I++L   L +      I+       +++   +    +    + L ++ L       
Sbjct: 891  YFEQISNLVKQLDKEAPQVIIQA------LIVEVELDNDDEFGVELGLQDSLLFNRSIID 944

Query: 176  YANSSSKKVMNLLNIAGEDQVTLKVTIA--EVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
               +  + +    N+   +Q     TI   E     L           +++  + +  A 
Sbjct: 945  NVLTVQQTITGQNNVTQTNQ-----TIVSQEATPGFLFNSINPLGTNNTNNVSNTAGQAL 999

Query: 234  FGGKFVSEGGDFSVKGVL---DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      D    G++      S   ++ AL     +  L+ P +  +   +A    G
Sbjct: 1000 SNFSLQRGNSDLGFGGLVLSASSESVSILIRALAAKRNVHVLSRPQIRTVDNVTAQIQVG 1059

Query: 291  GQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------- 338
                     S     +    +   + G++L  TP +   G I +  Q E S+        
Sbjct: 1060 QIVPVVNGVSVTAVGSANPVIQQSEAGIILTVTPRISPDGNIVMETQAEKSDFNGSSVPI 1119

Query: 339  --PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                   N  + P   + +  TTV +P+G T+VL G++ +    ++  +P L  IP++G 
Sbjct: 1120 FTDATTGNVVESPIKNITQVQTTVSVPNGQTVVLGGMITESDTTIERKVPWLGDIPLIGI 1179

Query: 397  LFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             FR    +    E+ +  TP +++  A  +
Sbjct: 1180 PFRYDYSSTRRKELLVFLTPRIIRNDADSE 1209


>gi|289679098|ref|ZP_06499988.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae FF5]
          Length = 221

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 50/208 (24%), Positives = 82/208 (39%), Gaps = 11/208 (5%)

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL--- 294
             +     +        + +  L ALE     + L+ P+L  ++ Q A    G       
Sbjct: 1   GAALASTDAFFYSFVSNNLQVALRALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQ 60

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN---AGDM 348
                  ++ T  +SV     GV+L   P +   G + + IQ +VS      N   A   
Sbjct: 61  TSINTNTNAGTTLSSVEYVQTGVILDVVPRINPGGLVYMDIQQQVSSADTNANNSDANGN 120

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P    R   T V   SG T++L GL+K D  +    +P L +IP L  LF N+  ++  T
Sbjct: 121 PRISTRSVATQVAAQSGQTVLLGGLIKQDNAETVSAVPYLGRIPGLRWLFGNTSKSKGRT 180

Query: 409 EIFIAATPFLVKPVAMRDLSRPDDHYSV 436
           E+ +  TP ++   +     +  D Y  
Sbjct: 181 ELIVLITPRVI--TSSSQARQVTDDYRQ 206


>gi|237805025|ref|YP_002889179.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
 gi|231273325|emb|CAX10240.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/TZ1A828/OT]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|166154016|ref|YP_001654134.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
 gi|301335216|ref|ZP_07223460.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2tet1]
 gi|165930004|emb|CAP03487.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis 434/Bu]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|166154891|ref|YP_001653146.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
 gi|165930879|emb|CAP06441.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis L2b/UCH-1/proctitis]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|76789414|ref|YP_328500.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|237803104|ref|YP_002888298.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
 gi|76167944|gb|AAX50952.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|231274338|emb|CAX11133.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis B/Jali20/OT]
          Length = 921

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|289525718|emb|CBJ15199.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis Sweden2]
 gi|296435288|gb|ADH17466.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis E/150]
          Length = 921

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|270157060|ref|ZP_06185717.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|289164527|ref|YP_003454665.1| type II protein secretion LspD [Legionella longbeachae NSW150]
 gi|269989085|gb|EEZ95339.1| type II secretory pathway protein LspD [Legionella longbeachae
           D-4968]
 gi|288857700|emb|CBJ11543.1| type II protein secretion LspD [Legionella longbeachae NSW150]
          Length = 786

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 49/275 (17%), Positives = 106/275 (38%), Gaps = 24/275 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           K+V+  L+I    Q+ ++  +AE+ +D +  +G +      +  P               
Sbjct: 489 KRVIGQLDIK-PAQLLIEALVAEINQDDVNDLGIEWGSNQQTGKPGGFR----------- 536

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G   +        F+  ++AL RA     L+ P++  +  + A    G Q    + +  
Sbjct: 537 NGFAIINSKTQIADFQAQIYALARAHKANILSTPSVVVLDNRQAKILVGKQVSVASTNYP 596

Query: 302 T---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPS 350
                       T+    +  + L+  P +     I ++I       +P     A   P+
Sbjct: 597 NNAGGTTPASPYTTFDRVNVALHLYVRPQITRGNGIQMQIDQGNDTLDPPATAEASVNPT 656

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +R+    T+V + SG  +VL GL +D +      +P+L  +P +G LF+ +   RE+  +
Sbjct: 657 FRISSIVTSVHVESGDIVVLGGLTQDRLDNDNNRLPVLGDLPGVGRLFKRNINTREKRVL 716

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
            +   P +++      +    + Y+     +  + 
Sbjct: 717 MVFIKPIILRN-ERDTMHLSGEKYNNIRQYELDWL 750


>gi|296437143|gb|ADH19313.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia trachomatis G/11222]
          Length = 921

 Score =  144 bits (364), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSNTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|196230668|ref|ZP_03129529.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196225009|gb|EDY19518.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 864

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 69/379 (18%), Positives = 129/379 (34%), Gaps = 112/379 (29%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+ + ++        Q      ++++      G  QV ++    E+++  LK++GF   +
Sbjct: 462 AIYIIKSSRLIVRNTQDQLDLVEQIVTSTGGQGPVQVEIESKFVEIQQTNLKELGFDWLL 521

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244
              +   + +  A  G    +   +                                   
Sbjct: 522 GQFNLPSTYNAFAGGGTTGTAPALNPSDFPFVNGGVPVGQNSITAGNRSGNNGISANAID 581

Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                            +V GV     F+ V+ AL +   +  L+ P +T  SGQ A   
Sbjct: 582 ALLFPINGSSQVAPAIAAVAGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 641

Query: 289 SGGQHLYKTVSSS-------------------------------TGATSVTTHDYGVVLH 317
              +  Y T  +                                T  T+  T + GV L 
Sbjct: 642 IIREFRYPTEFTPPQIPQTFGNTGGGILGGGGGSSSTGSFPVTPTTPTAFETRNTGVTLE 701

Query: 318 FTPTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSY 351
             P +   G  I L +  +V                         ++ VI  N  + P +
Sbjct: 702 VEPVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGTSTQAVITPNVINQPIF 761

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             RK  T+V +  G T+VL GL+++D+Q++++ +P++  +PI+G LFR+S     +  + 
Sbjct: 762 STRKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDVPIIGRLFRSSIDQHIKRNLI 821

Query: 412 IAATPFLV----KPVAMRD 426
           I  T  L+    +PV   D
Sbjct: 822 IFVTARLINAAGEPVRAED 840


>gi|262064162|gb|ACY07145.1| IV [Enterobacteria phage f1]
          Length = 426

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 63/355 (17%), Positives = 124/355 (34%), Gaps = 38/355 (10%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVR 152
           N  ++G +   +   +   +  I  L  +  +             V   +D V     + 
Sbjct: 80  NFDMVGSNPSIIQKYNPNNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKIN 138

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE------------------D 194
            ++       + E F+  +        S     NLL ++                    D
Sbjct: 139 NVRAKDLI-RVVELFVKSNTSKSSNVLSIDG-SNLLVVSAPKDILDNLPQFLSTVDLPTD 196

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           Q+ ++  I E+++       F       +     +          S GG F   G+ +  
Sbjct: 197 QILIEGLIFEIQQGDALDFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGD 252

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSV 307
                + AL+  +  + L+ P +  +SGQ  S + G    + T   +           ++
Sbjct: 253 VLGLSVRALKTNSHSKILSVPRILTLSGQKGSISVGQNVPFITGRVTGESANVNNPFQTI 312

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              + G+ +   P  ++ G I L I ++         A D+     R   TTV L  G T
Sbjct: 313 ERQNVGISMSVFPVAMAGGNIVLDITSKADSLSSSTQASDV-ITNQRSIATTVNLRDGQT 371

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           ++L GL           +P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 372 LLLGGLTDYKNTSQDSDVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 426


>gi|302038138|ref|YP_003798460.1| putative general secretion pathway protein D [Candidatus Nitrospira
           defluvii]
 gi|300606202|emb|CBK42535.1| putative General secretion pathway protein D [Candidatus Nitrospira
           defluvii]
          Length = 765

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/452 (17%), Positives = 150/452 (33%), Gaps = 71/452 (15%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P   +   A +      +GK   ++   +K     V  D   + + D    + +     +
Sbjct: 169 PVTLQFRNAGLKEVVEALGKAAHVNFVFDK----DVRNDPVTISLEDKPFDEALSLVLNS 224

Query: 87  MYLFGKNVGQANVIL-------IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
             LF +  G    I+              M+    L       +   L+  +   +I   
Sbjct: 225 NSLFAQKAGPTLYIISPNTKQKQEQYQDLMIRTFYLSSAKAKDMVALLKSMLDVKHIHGN 284

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              +T+V+      ++ +++ ++                          N   + +V   
Sbjct: 285 EALNTIVIRDQPEKVELAEKIIQA-------------------------NDREDSEVLFD 319

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF--- 256
           V + EV R + +  G  +     ++     F     G    +    ++  +         
Sbjct: 320 VEVLEVNRTVDQTYGLSYPKQIGAALIPPGFTGAIAGDIAQQFTYRNLASLGQDSYLFKL 379

Query: 257 --ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK--------------TVSS 300
                L   ++ T  +TLA P +  ++ + A    G +                   V +
Sbjct: 380 PTNVQLDFFKQVTDAKTLAAPKVRVLNNKKAEVNIGDKQPILLSTTNVLPGQAATGAVPT 439

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR-----VRK 355
           ++  TS+   D GV L   P +     + L+++ EV      V     P         R 
Sbjct: 440 TSTVTSIEFRDTGVKLTVEPNIHLANELALKMKIEVIRLGDVVLLQQSPPITQFKFGNRS 499

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A+T + +  G TIVL GLL+++ ++ K  IP L  IP LG L  + +  R  TE+ +  T
Sbjct: 500 AETMLNVRDGETIVLGGLLQEEDRRTKVTIPWLGDIPFLGNLLSSFKTQRVTTEVILTIT 559

Query: 416 PFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           P +V       L  P          +AF+   
Sbjct: 560 PHIV-----NSLRLPGP------QGQAFWSGT 580


>gi|296162480|ref|ZP_06845271.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
 gi|295887293|gb|EFG67120.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. Ch1-1]
          Length = 709

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 45/239 (18%), Positives = 84/239 (35%), Gaps = 15/239 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246
           V +   + +V     + +G     +      +                    V+ G + +
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRVSAASGTINSPLTFGAPALATAAGVASGLNLA 413

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                        +HALE A   R L+ P +  ++   A  TS      +          
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471

Query: 307 VTTHDYGVVLHFTPTVLS----PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +   D G+ L  TP++ S       I L IQ +       ++   +P        T   +
Sbjct: 472 LYNIDTGLTLKVTPSIESAAEPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G ++++ G   +  +     +P+L  +P +GALFR+++  RE  E  I  TP L + 
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYVGALFRDTQTTRERLERLILITPRLKRA 590


>gi|331654572|ref|ZP_08355572.1| general secretion pathway protein D [Escherichia coli M718]
 gi|331047954|gb|EGI20031.1| general secretion pathway protein D [Escherichia coli M718]
          Length = 615

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|296436215|gb|ADH18389.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9768]
 gi|296438075|gb|ADH20236.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/11074]
 gi|297140576|gb|ADH97334.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydia trachomatis G/9301]
          Length = 921

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 567 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 626

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       +++                                G      G++  
Sbjct: 627 KVAYASGLLSSTGLTDPLRNQSLPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 686

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 687 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 746

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 747 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 805

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  S   R++  I I   P ++
Sbjct: 806 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRSIDQRQKRNIMIFIKPKVI 865

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 866 SSFEEGTALSNTEGYR 881


>gi|167030895|gb|ABZ05763.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 689

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L       A+    +     V+ +     G    I +  N     +   + + V++   
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199

Query: 75  TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
             A V   +     + + +     G A ++  L+             + +  +  +  + 
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRSAPAGASGPMPVQPDNGMEAMR 255

Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            + R  +           N         V L G +                      ++ 
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
             +  ++++  +++     V +   I +V R  + ++         +     +       
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            FVS           D   F   + ALE       +A P++  +  Q A           
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354
                     +     G  L  TP V+  G    +++  ++ +  +        S   R 
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   +     +VL G   ++       IP+L  IP+LG LF ++R      E     
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           TP LV      D + P  + S  +  +      +N++      +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566


>gi|227328511|ref|ZP_03832535.1| type III secretion protein [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 689

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 61/464 (13%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L       A+    +     V+ +     G    I +  N     +   + + V++   
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199

Query: 75  TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
             A V   +     + + +     G A ++  L+             + +  +  +  + 
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255

Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            + R  +           N         V L G +                      ++ 
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
             +  ++++  +++     V +   I +V R  + ++         +     +       
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            FVS           D   F   + ALE       +A P++  +  Q A           
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDMPSYRVR- 354
                     +     G  L  TP V+  G    +++  ++ +  +        S   R 
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGTQRSIQLVIDIEDGQVETGREGEASGVKRG 469

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   +     +VL G   ++       IP+L  IP+LG LF ++R      E     
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           TP LV      D + P  + S  +  +      +N++      +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566


>gi|300310140|ref|YP_003774232.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072925|gb|ADJ62324.1| type II/III HrcC transmembrane protein [Herbaspirillum seropedicae
           SmR1]
          Length = 693

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 42/250 (16%), Positives = 88/250 (35%), Gaps = 19/250 (7%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++N L++    QV ++  I ++ R  L ++G +          + +              
Sbjct: 328 LINQLDVK-PQQVEIEALIVDIDRSRLAEMGVEWGARAGVVNTTVNGTTTQSSGTDLPLP 386

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             ++  + D   F   L A+E     R LA PT+  +   +A            +     
Sbjct: 387 GATLL-ISDAARFYARLKAMESNGEARVLATPTVLTLDNVAAVLDLSQSAYVSLI--GER 443

Query: 304 ATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPV------------IGVNAGDM 348
              ++    G +L   P ++  G   R+ L +  E                     +   
Sbjct: 444 VADMSDITAGTMLRVIPRIIDDGGQTRVRLEVDIEDGSLNNGNNDSGSNSSRGTGASTIA 503

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
            S      +T   + +  T+++ G   + + + K+ +PLL  +P++G LFR+   +    
Sbjct: 504 ASVTRSTINTQAIIDAQQTLMIGGYRAESLIRNKQKVPLLGDLPVVGGLFRSESRSNSTR 563

Query: 409 EIFIAATPFL 418
           E     TP +
Sbjct: 564 ERLFLITPRI 573


>gi|261854769|ref|YP_003262052.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
 gi|261835238|gb|ACX95005.1| general secretion pathway protein D [Halothiobacillus neapolitanus
           c2]
          Length = 725

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 95/490 (19%), Positives = 163/490 (33%), Gaps = 75/490 (15%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
           +L+      +   L    P  A L    ++N+ VI      I + KKI   +++  +  V
Sbjct: 158 HLRYVPAAPLLTVLRQIMPQQAALSVYPDSNSLVITDRAGNIDRLKKILAKVDQPAVGDV 217

Query: 63  PVDVQDVLVSDPTKADVVVH---------------------------------SPRTMYL 89
            +       +D   + +                                       ++ L
Sbjct: 218 EIIRLKRASADSVVSTLKALFGASGGGGAKGAPVPGGGAGGNFSSVPAFAADDRTNSVLL 277

Query: 90  FGKNVGQANV--ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVL 147
            G  V +A +  I++  D  Q    +  + R        L   +          S     
Sbjct: 278 SGDAVSRAKMRAIILNLDMPQTNYGNTRVFRLKYANAEDLVDVLKGIVSTNGATSTGATA 337

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYAN--SSSKKVMNLLNIAGEDQVTLKVTIAEV 205
                T  D+ +    ++  L+        +   + + V++ L+I    QV ++  IAEV
Sbjct: 338 TKEATTNPDNNQLEIAADKSLNALVVTASPSRMQTVESVIDQLDIR-RKQVLVEAIIAEV 396

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL-------------- 251
              + K++G Q  + G  SG      + F G   S     +  G                
Sbjct: 397 SNGVTKKLGTQF-LVGGGSGTVPIGISTFNGLLSSVASSAAQAGTGSVGSAIGLGLAGAL 455

Query: 252 -------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                            F  ++ AL   +    L+ P+L  +  Q AS   G      T 
Sbjct: 456 GDGGNIGVGRYGQGGADFALLVSALAGNSGNNILSTPSLLTLDNQEASIVVGQNIPIVTG 515

Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP 349
           S          +    ++T  D GV L  TPT+   G + L+I+ EVS       +    
Sbjct: 516 SYAQTGSATSPTNPFQTITREDIGVKLKVTPTISPDGTVRLKIEQEVSSLDSAAQSSAGL 575

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R   TTV++  G  +VL GL+ D     ++ +P L  IPILG LFR    +  +  
Sbjct: 576 ITNKRNVTTTVQVDDGDVVVLGGLIDDSTNSNQQSVPGLGDIPILGNLFRYRSASTNKRN 635

Query: 410 IFIAATPFLV 419
           + I   P +V
Sbjct: 636 LMIFIRPLIV 645


>gi|254447525|ref|ZP_05060991.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
 gi|198262868|gb|EDY87147.1| type II and III secretion system protein [gamma proteobacterium
           HTCC5015]
          Length = 506

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 48/260 (18%), Positives = 95/260 (36%), Gaps = 24/260 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
             ++ +   G  QV ++ T+ E+      Q G       +    +   +        S  
Sbjct: 232 GFVDRVVERGRRQVLIEATVVEIDLSQSYQAGVDWQRVMNGGEWTLQQSMTKPSLAASPM 291

Query: 243 GDFSVKGVLDRFSFE-TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---- 297
              +      R S     +  LE+   +   + P + A++ Q +      + +Y T    
Sbjct: 292 TLLAQHEKQSRDSVTRAAVTLLEQFGDVNVHSRPRIVALNNQPSLLKVIDKRVYFTLDVQ 351

Query: 298 -------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------ 344
                   ++ST  T + T   G  +  TP V     + L ++  +S     V+      
Sbjct: 352 NTTASGGATTSTVETHINTLPVGFTMSVTPFVTQSD-VTLSVRPSLSRITRFVDDPSPAL 410

Query: 345 -----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                   +P   VR+ +T + L    T ++ GL+++   +    +P+LS+IP LG LF+
Sbjct: 411 AAEGIVSRVPEVEVREMETLLRLDGEQTALIGGLMQERRSEEHYAVPVLSRIPWLGELFK 470

Query: 400 NSRFNREETEIFIAATPFLV 419
                  ++E+ I      V
Sbjct: 471 GREERWNKSELVILLRARRV 490


>gi|323941937|gb|EGB38116.1| general secretion pathway protein D [Escherichia coli E482]
          Length = 615

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|2897962|gb|AAC38377.1| EscC [Escherichia coli]
          Length = 512

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 46/247 (18%), Positives = 100/247 (40%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G +++L G ++D     K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGESLLLGGFIQDKESSSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|319791845|ref|YP_004153485.1| general secretion pathway protein d [Variovorax paradoxus EPS]
 gi|315594308|gb|ADU35374.1| general secretion pathway protein D [Variovorax paradoxus EPS]
          Length = 770

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 95/264 (35%), Gaps = 28/264 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---------- 240
               QV ++  I EV  +     G Q      ++    + ++      ++          
Sbjct: 414 GRRAQVMIEALIVEVSANKAANFGVQWQSALGNNAVIGTNSSLNRNNILALTQALATRNP 473

Query: 241 --------EGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                    G +  + G +        + +          L+ P L  +  + A    G 
Sbjct: 474 AGLASSIQPGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIIIGQ 533

Query: 292 QHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IG 342
              + T S +           T+V   D G+ L   PT+   G + + I  E S      
Sbjct: 534 NVPFPTGSYASTSGSVGVNPFTTVERKDVGLTLRVRPTINENGTVRMTIFQETSTVDQNS 593

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
           +   + P+   R  +++V +  GG ++L GLL D      E IPL   IP+LG LF+N  
Sbjct: 594 LANPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDTYNNNIEKIPLAGDIPVLGNLFKNEN 653

Query: 403 FNREETEIFIAATPFLVKPVAMRD 426
             R ++ + +   P +++  A  +
Sbjct: 654 RTRNKSNLMMFLRPAVMRDGASTE 677


>gi|323946657|gb|EGB42679.1| general secretion pathway protein D [Escherichia coli H120]
          Length = 615

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 105/300 (35%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   +E
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 612


>gi|332526236|ref|ZP_08402367.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Rubrivivax benzoatilyticus JA2]
 gi|332110072|gb|EGJ10700.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Rubrivivax benzoatilyticus JA2]
          Length = 318

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG---------- 242
              + ++  I ++  D L+++G    ++   S        +                   
Sbjct: 60  PQALEIEARIVDIDTDRLRELGINWRLSSGRSSLLFGNGTNSDTLLSGSQRPEDITPQGK 119

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
           G F    +         ++AL+   A + ++ P +  +S   A F +      +      
Sbjct: 120 GGFLSAVLGGADELALRINALQDQGAAKVVSSPQVLTLSDVEAVFDTSRTFYVRVAGRED 179

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPV-IGVNAGDMPSYRVRKADTTV 360
               + +   G  L  TP V      + +++   + +          +P       +T  
Sbjct: 180 --VDLFSVSAGTTLRVTPHVFRDEHGVRIKLLVAIEDGALSQQQVDQIPVVERASINTQA 237

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++ GL ++        +P L  IP+LG LF++S  +   TE     +P LV 
Sbjct: 238 LIFEGESLLVGGLTREASSNGVTKVPFLGDIPVLGNLFKSSVDSLRRTERLFLISPRLV- 296

Query: 421 PVAMRDLSRPDDHYSVEDDAKA 442
           P      + P+       + + 
Sbjct: 297 PARRVAATAPEGAAPPATENRR 318


>gi|51103131|gb|AAT96274.1| hrcC [Pseudomonas viridiflava]
          Length = 753

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G  ++  + +   ++    +      +   +  + V  L      + V +   I ++ R
Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L  +  + S    S     S             G  S   + D   F   + ALE   
Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P++  +  Q A           T        +V     G  L   P  ++  +
Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501

Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               ++  ++ +  +      D P  +     T   +    ++V+ G   D+  + ++ +
Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  +P++GALF + R      E     TP LV
Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595


>gi|34500885|gb|AAQ73913.1| HrcC [Pectobacterium carotovorum subsp. carotovorum]
          Length = 689

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 64/464 (13%), Positives = 137/464 (29%), Gaps = 61/464 (13%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L       A+    +     V+ +     G    I +  N     +   + + V++   
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199

Query: 75  TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQML----NLDILIERDIAHLE 124
             A V   +     + + +     G A ++  L+             + +  +  +  + 
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDNGMEAMR 255

Query: 125 MTLRRFI--------ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            + R  +           N         V L G +                      ++ 
Sbjct: 256 DSTRSLMTRLATRNNPGRNGEAS---GRVTLSGKISAD---------VRNNALLIRDDEK 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
             +  ++++  +++     V +   I +V R  + ++         +     +       
Sbjct: 304 RRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTAMSRLEANWQAQLGNVSAGSTMMMGRST 362

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
            FVS           D   F   + ALE       +A P++  +  Q A           
Sbjct: 363 LFVS-----------DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFIT 411

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR- 354
                     +     G  L  TP V+  G +  +++  ++ +  +        S   R 
Sbjct: 412 AT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQLVIDIEDGQVETGREGEASGVKRG 469

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   +     +VL G   ++       IP+L  IP+LG LF ++R      E     
Sbjct: 470 TVSTQALIGENRALVLGGFHVEESGDRDRRIPILGDIPLLGQLFTSTRHEVSRRERLFIL 529

Query: 415 TPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
           TP LV      D + P  + S  +  +      +N++      +
Sbjct: 530 TPHLV-----GDQTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566


>gi|312972778|ref|ZP_07786951.1| general secretion pathway protein D [Escherichia coli 1827-70]
 gi|310332720|gb|EFP99933.1| general secretion pathway protein D [Escherichia coli 1827-70]
          Length = 613

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612


>gi|323173796|gb|EFZ59425.1| general secretion pathway protein D [Escherichia coli LT-68]
          Length = 613

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 105/300 (35%), Gaps = 44/300 (14%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREIVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  G 
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQ 494

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
                       ++S    +V     G++L  TP +     + + I+ EVS+     +  
Sbjct: 495 DVPVLTGSTVGSNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLD 554

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +  +  RK  TTV    G  IVL GL+ D   +    +PLL  IP++G LF+++   ++
Sbjct: 555 VV--FGERKLKTTVLANDGELIVLGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKK 612


>gi|51103173|gb|AAT96315.1| HrcC [Pseudomonas viridiflava]
          Length = 753

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 92/274 (33%), Gaps = 16/274 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G  ++  + +   ++    +      +   +  + V  L      + V +   I ++ R
Sbjct: 336 SGESKSNSNRRVVADVRNNAVLIYDDPEKRETYQQLVQQLDQ--PSNLVEIDAVILDIDR 393

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L  +  + S    S     S             G  S   + D   F   + ALE   
Sbjct: 394 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 443

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P++  +  Q A           T        +V     G  L   P  ++  +
Sbjct: 444 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 501

Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               ++  ++ +  +      D P  +     T   +    ++V+ G   D+  + ++ +
Sbjct: 502 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 561

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  +P++GALF + R      E     TP LV
Sbjct: 562 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 595


>gi|182678562|ref|YP_001832708.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182634445|gb|ACB95219.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 801

 Score =  144 bits (362), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248
               QV ++VT+AEV        G Q  +  S+       +A      +           
Sbjct: 540 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 599

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
            +    +   V++AL   T ++ L+ P+L  +  Q A    G Q    +  +++  T   
Sbjct: 600 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 659

Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               SV   D G++L+  P V + G + L I+ ++S           P+   R+  +T+ 
Sbjct: 660 AIVNSVDYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 719

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+G T++LAGL+++     + G+P++SKI  L  L  N   +   TE+ +   P +++
Sbjct: 720 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 778


>gi|34498087|ref|NP_902302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
 gi|34103942|gb|AAQ60302.1| invasion protein - outer membrane [Chromobacterium violaceum ATCC
           12472]
          Length = 561

 Score =  143 bits (361), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 62/415 (14%), Positives = 134/415 (32%), Gaps = 41/415 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   + +G  K+ ++++        V D T         + + +    
Sbjct: 155 DLVVNAASMMDKQSDGLELGRQKIGVVRLGNT----FVGDRTY----DLRDQKIVI---- 202

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A VI  L+  + K +  L        A     +         R       + L   +
Sbjct: 203 PGMATVIEKLLDGERKPVAGL----APPAAEKRDDIPAMPDFKEGRGLPYQAGLSLPEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + +   L++A    V L + I ++++D 
Sbjct: 259 KRDAAAGDIKVIAYPDTNSLLVKGTAEQVRFIENLARALDVAKRH-VELSLWIIDLQKDD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L Q+G   S              +  G  +++ G  S    LD   F   + A+      
Sbjct: 318 LDQLGVNWS--------GSVTVGNKLGVTLNQAGSLS---TLDGTRFLAAVMAMTSKKKA 366

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P +       A F +      K       +  +    YG ++   P   + G+I 
Sbjct: 367 NVVSRPVVLTQENIPAIFDNNRTFYAKL--EGERSVDLQHVTYGTLISVLPRFAADGQIE 424

Query: 330 LRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           + +  E        +         +P     +  T   +P G ++++ G  +D  ++ + 
Sbjct: 425 MSLSIEDGSQARAPDYSSDNKDAGLPEVGRTRISTVARVPQGKSLLIGGFTRDASERGEG 484

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPDDHYSVE 437
            +PLL  +P++G LFR     +  T       P  +   +         D     
Sbjct: 485 KVPLLGDLPLVGGLFRYQSAKQTNTVRVFLIQPREIDDALTPDASDLSADLVRRA 539


>gi|269963152|ref|ZP_06177487.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269832116|gb|EEZ86240.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 623

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 61/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)

Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
           VL G V+T   + +  E      + T       +  A+  ++  +N + +          
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHAGASVEAEPGLNAIIVRDTQARLPLY 280

Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
                     Q  ++V  +I ++  + L Q+G            S       G   G  V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIEVGNNSILDIKTTGDVDGGDV 340

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   + K +LD  +       +  LE   + + ++ PTL       A   +      K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
            +   T A  +    YG +L   P ++         I L +  E    +      D+PS 
Sbjct: 401 LIGRETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSI 458

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFR++      T   
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRM 518

Query: 412 IAATPFLV 419
               P +V
Sbjct: 519 FIIEPRIV 526


>gi|50508104|dbj|BAD30080.1| outer-membrane protein of Hrp(typeIII) secretion pathway
           [Pseudomonas syringae pv. tabaci]
          Length = 699

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S G   +           + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLSVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|91782693|ref|YP_557899.1| putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like [Burkholderia xenovorans
           LB400]
 gi|91686647|gb|ABE29847.1| Putative type III secretion hypersensitivity response secretion
           protein, HrcC/HrpA1- like protein [Burkholderia
           xenovorans LB400]
          Length = 736

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 44/238 (18%), Positives = 82/238 (34%), Gaps = 15/238 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF---------GGKFVSEGGDFS 246
           V +   + +V     + +G     +      S                    ++ G + +
Sbjct: 354 VEIDAVVIDVSSSAARSLGVAWGGSNGRISGSSGTINSPLTFGAPALATAAGMASGLNLA 413

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                        +HALE A   R L+ P +  ++   A  TS      +          
Sbjct: 414 TLVGNSAQYLFAQIHALEDAGQARVLSSPQVLTLNNMEAVLTSHSSVYVRVA--GNQDVD 471

Query: 307 VTTHDYGVVLHFTPTV----LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           +   D G+ L  TP++         I L IQ +       ++   +P        T   +
Sbjct: 472 LYNIDTGLTLKVTPSIESAADPRRNIRLNIQIDDGAFNTSMSVDGIPKVDNHSIVTQAIV 531

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G ++++ G   +  +     +P+L  +P LG LFR+++  RE  E  I  TP L +
Sbjct: 532 RDGESLLVGGYQYERSESTTSKVPVLGDVPYLGVLFRDTQTTRERLERLILITPRLKR 589


>gi|297538911|ref|YP_003674680.1| type II and III secretion system protein [Methylotenera sp. 301]
 gi|297258258|gb|ADI30103.1| type II and III secretion system protein [Methylotenera sp. 301]
          Length = 638

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/240 (22%), Positives = 100/240 (41%), Gaps = 18/240 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V L++ + EV+R  L+ +G       +        +     K +   G+  V   +    
Sbjct: 329 VMLELQVMEVKRSYLQNLGVN---PITGISVPVPSSGILTVKDLRVSGNSLVVNGIPGLV 385

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDY 312
           F+        +  +  LA P +   +  +A    G +    T + ++    + +V   D 
Sbjct: 386 FDA------TSGDVNLLANPKIRVKNKDTARIHIGEKVPVFTANVASTGVTSQTVQYIDA 439

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGG 366
           G+ L   PT+ +   + ++I   V           G +         R A T + L  G 
Sbjct: 440 GLKLEVEPTISAADDVTIKINLNVGSIGDKVVASSGASQSIAFRVGTRLATTQLRLHDGE 499

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           T +LAGL+ D  ++   GIP LSKIP+LG LF N   ++ +TEI ++ TP +++    + 
Sbjct: 500 TQILAGLIDDQDRKNVSGIPGLSKIPLLGKLFSNQTDDKVKTEIVLSITPHIIRQRTPQQ 559


>gi|330895850|gb|EGH28136.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 640

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 91/265 (34%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 225 RVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 283

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S           GG  + + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 284 FNAGSVN---------GGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSIL 334

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L  TP  L      ++ L +  E
Sbjct: 335 TLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIE 392

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G
Sbjct: 393 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVG 452

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 453 KLLFQSRSRELSQRERLFILTPRLI 477


>gi|114330532|ref|YP_746754.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
 gi|114307546|gb|ABI58789.1| type II and III secretion system protein [Nitrosomonas eutropha
           C91]
          Length = 767

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 85/422 (20%), Positives = 147/422 (34%), Gaps = 59/422 (13%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E     +      I +   I+   ++ +          + V D +  DV       
Sbjct: 187 PITMEFRDTSLKAIFELISRTAGINFVFDRNVQ---QEATASMFVRDNSIEDVLKLLLLT 243

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 V +  T+ ++     +          + ++    +   D+  +   +R  +   
Sbjct: 244 NQLAYKVLNSNTLLIYPDTPAK-----QKDYQELVVRSFHVANTDVKQMVAMIRGLVKAR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           +I V    +  V+   +         + L E  ++ +                       
Sbjct: 299 DIYVNEKLNLFVIRDTL-------EMIRLVERLVAINDFPDPE----------------- 334

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSG-PSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            V L V + EV+RD   ++G     + + S  P     A      V +       G    
Sbjct: 335 -VMLDVVVLEVKRDNTLELGPNMPTSVTFSAIPGVGAPAQAAADSVVKMSMIKNAGFEGL 393

Query: 254 FSFE----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATS 306
            SF       +      T    LA P +   S + A    G +    TV+++     A S
Sbjct: 394 RSFTISNQAKIDFGRTLTNADVLANPRIRVKSREKAKIHIGNKEPVFTVTNTANVGSAAS 453

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTV 360
            T  D G+     P V +   + L+   EVS          G NA        R A+T +
Sbjct: 454 ATYIDVGLKFEVEPVVRTNNEVTLKALLEVSSNLGEKRSGGGDNAATAIVIGTRTAETVL 513

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           EL  G T VLAGL++DD+ ++K GI  L++IPILG +F        +TEI +  TP +++
Sbjct: 514 ELRDGETQVLAGLIQDDLSRVKSGIAGLTEIPILGDIFSKQVRKHNKTEIILLITPHIIR 573

Query: 421 PV 422
            V
Sbjct: 574 NV 575


>gi|313142359|ref|ZP_07804552.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
 gi|313131390|gb|EFR49007.1| conserved hypothetical protein [Helicobacter canadensis MIT
           98-5491]
          Length = 505

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228
           +  +  L+   + QV + V I  +  +     G                   G+S G + 
Sbjct: 217 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 276

Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                 G   V + G  ++   ++      S   ++  LE    + +++ P +  ++ Q 
Sbjct: 277 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 336

Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A  + G           Q+     + +       +   GV+L  TP ++    I L+I  
Sbjct: 337 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 395

Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +++                P+    +  + V + +   ++L GL+  +    +  IP+L
Sbjct: 396 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 455

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
             IP++  LF  S+      EI     P +++      L 
Sbjct: 456 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 495


>gi|269105039|ref|ZP_06157734.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268160674|gb|EEZ39172.1| type III secretion system outer membrane pore YscC [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 624

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 37/308 (12%)

Query: 146 VLHGMVRTIQDSQRAVE-----LSETFLSQSGRNQYANSSSKKVMNLLNIAGED------ 194
           VL G V+T   + +  E      + T       +  A+  ++  +N + +          
Sbjct: 222 VLSG-VQTQIKATKESEETDINTAATTTKNVSVHGGASVEAEPGLNAIIVRDTQARLPLY 280

Query: 195 ----------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG---GKFV 239
                     Q  ++V  +I ++  + L Q+G       +    S       G   G  V
Sbjct: 281 RKLVAQLDQPQSRIEVALSIVDISANDLSQLGVDWRAGIAVGNNSILDIKTTGDVDGGDV 340

Query: 240 SEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           + G   + K +LD  +       +  LE   + + ++ PTL       A   +      K
Sbjct: 341 TLGSGQTFKSLLDATNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVK 400

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSY 351
            +       ++    YG +L   P ++         I L +  E    +      ++PS 
Sbjct: 401 LIGRE--IAALEKVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDNVPSI 458

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           R  +  T   +  G ++++ G+ +D++      +PLL  IP LGALFRN+      T   
Sbjct: 459 RKTEISTLATVKQGQSLLIGGVYRDEVSHQLRKVPLLGDIPYLGALFRNTTDTTRRTVRM 518

Query: 412 IAATPFLV 419
               P +V
Sbjct: 519 FIIEPRIV 526


>gi|325917024|ref|ZP_08179263.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
 gi|325536775|gb|EGD08532.1| HrcC protein [Xanthomonas vesicatoria ATCC 35937]
          Length = 606

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 106/336 (31%), Gaps = 21/336 (6%)

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               G     + +      +           + +          V  G      D+    
Sbjct: 276 WFGGGSPSDRVPVSPPLPGSGGTNAPASVWPEMSP-ARRDGPLAVDTGGGEPASDAPVIE 334

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT- 220
               T            ++   ++  L+      + +  TI E+R   ++ +G       
Sbjct: 335 ADPRTNSILIRDRPERMAAYGTLIQQLDNR-PKLLQIDATIIEIRDGAMQDLGVDWRFHS 393

Query: 221 -----------GSSSGPSKSFAADFGGKFVSE-GGDFSVKGVLDRFSFETVLHALERATA 268
                      G   G   + +        S  GG  +           T + ALE+   
Sbjct: 394 RRVDVQTGDGRGGQLGYDGTLSGAAAAGATSPLGGTLTAVLGDAGRYLMTRVSALEQTNK 453

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SP 325
            + ++ P +  +    A      Q   +    ++    +     GV L   P+V+   S 
Sbjct: 454 AKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVSLRVLPSVVPGSSN 511

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           G++ L ++ E  +         +P     +  T   +  G ++++AG   D  Q     +
Sbjct: 512 GQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQAFVNEGQSLLIAGYASDTDQTDLNKV 570

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           P LSKIP++G LF++ + +    +     TP +V P
Sbjct: 571 PGLSKIPLIGNLFKHRQQSGSRLQRLFLLTPHIVSP 606


>gi|330957480|gb|EGH57740.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 703

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 59/405 (14%), Positives = 130/405 (32%), Gaps = 42/405 (10%)

Query: 45  GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
           G  K + +  +    ++ P   D QD++V     A     +     + + + G      +
Sbjct: 148 GPAKYVELVRDYSKKVETPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
           ++ +   G+ +   D++         ++    +      +    ++   +  G+ +    
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267

Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                           + + R                   +  +K++  L+++  + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
              I ++ R+ L ++  + +    S G   +           + G  S   + +   F  
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            LH LE   +   +  P++  +  Q A               S    ++     G  L  
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           TP  L      ++ L +  E  +  I       PS R     T   +   G++V+ G   
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495

Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            +       IPLL  IP +G  LF++        E     TP L+
Sbjct: 496 LEANDKVHKIPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540


>gi|330984958|gb|EGH83061.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 703

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 58/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%)

Query: 45  GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
           G  K + +  +    +  P   D QD++V     A     +     + + + G      +
Sbjct: 148 GPAKYVELVRDYSKKVDTPEKDDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
           ++ +   G+ +   D++         ++    +      +    ++   +  G+ +    
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267

Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                           + + R                      +K++  L+++  + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEI 326

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
              I ++ R+ L ++  + +    S G   +           + G  S   + +   F  
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            LH LE   +   +  P++  +  Q A               S    ++     G  L  
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           TP  L      ++ L +  E  +  I       PS R     T   +   G++V+ G   
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495

Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            +       +PLL  IP +G  LF++        E     TP L+
Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540


>gi|22127358|ref|NP_670781.1| hypothetical protein y3484 [Yersinia pestis KIM 10]
 gi|108809090|ref|YP_653006.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|108810716|ref|YP_646483.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|145597787|ref|YP_001161863.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|167466374|ref|ZP_02331078.1| hypothetical protein YpesF_00430 [Yersinia pestis FV-1]
 gi|229837375|ref|ZP_04457538.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|229840587|ref|ZP_04460746.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842863|ref|ZP_04463015.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900911|ref|ZP_04516035.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|294502759|ref|YP_003566821.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|21960442|gb|AAM87032.1|AE013951_7 hypothetical [Yersinia pestis KIM 10]
 gi|108774364|gb|ABG16883.1| hypothetical protein YPN_0551 [Yersinia pestis Nepal516]
 gi|108781003|gb|ABG15061.1| hypothetical protein YPA_3099 [Yersinia pestis Antiqua]
 gi|145209483|gb|ABP38890.1| hypothetical protein YPDSF_0477 [Yersinia pestis Pestoides F]
 gi|229682250|gb|EEO78342.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690130|gb|EEO82187.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696953|gb|EEO87000.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229705498|gb|EEO91508.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|262360791|gb|ACY57512.1| hypothetical protein YPD4_0603 [Yersinia pestis D106004]
 gi|262364736|gb|ACY61293.1| hypothetical protein YPD8_0603 [Yersinia pestis D182038]
 gi|294353218|gb|ADE63559.1| hypothetical protein YPZ3_0649 [Yersinia pestis Z176003]
 gi|320016744|gb|ADW00316.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 284

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 108/272 (39%), Gaps = 24/272 (8%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K+I + +    I++V  ++  V VS    AD  +    ++ ++ K  G A   
Sbjct: 26  FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 85

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   + + +    +L+   I      +R    DS I +  + ++ +L G   T +     
Sbjct: 86  LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 145

Query: 161 VELSETFLSQS-----GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             +     +         +  +N   + V+N + +   +QV +K+TI E+ +D  + IG 
Sbjct: 146 ASIVGEATASKKEKERETSYQSNPEYQGVINKIKLPQANQVNVKLTIVEITKDFTENIGL 205

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
             +   S++G  +                       +  S  T++HA+      + LAEP
Sbjct: 206 DWNSIKSAAGAFQFLN-------------------FNAQSISTLVHAINDEAIAKVLAEP 246

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            L+ +SG+ ASF  GG+    + + +  +  +
Sbjct: 247 NLSVLSGEYASFLVGGEIPIVSTNQNGISVEL 278


>gi|224418841|ref|ZP_03656847.1| putative type II secretion system D [Helicobacter canadensis MIT
           98-5491]
 gi|253828170|ref|ZP_04871055.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
 gi|253511576|gb|EES90235.1| secretion system protein [Helicobacter canadensis MIT 98-5491]
          Length = 496

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 34/280 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-------------ITGSSSGPSK 228
           +  +  L+   + QV + V I  +  +     G                   G+S G + 
Sbjct: 208 ESYIQSLHQRLQKQVLIDVHILSITHNNTNTTGINWDELYNLQNLIIPAFGEGASFGGNG 267

Query: 229 SFAADFGGKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                 G   V + G  ++   ++      S   ++  LE    + +++ P +  ++ Q 
Sbjct: 268 EVGNTSGINIVGQKGVSNLHYGINIFSQGLSLNRIIEFLESYGKVESISNPKVLTLNNQP 327

Query: 285 ASFTSGG----------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           A  + G           Q+     + +       +   GV+L  TP ++    I L+I  
Sbjct: 328 AMISVGDILRYQKNTIYQNTNAQTTLTNTDNEYPSLFAGVLLDITP-LVFGEEIMLKINP 386

Query: 335 EVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            +++                P+    +  + V + +   ++L GL+  +    +  IP+L
Sbjct: 387 SITKTKENRTEIPNTAFETPPNLTTNQLSSIVSVKNNQKVILGGLISKNFATKENKIPIL 446

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
             IP++  LF  S+      EI     P +++      L 
Sbjct: 447 GSIPLIKPLFSYSQEVENTEEIVFIIEPKIIQAQDSISLE 486


>gi|77458214|ref|YP_347719.1| type II and III secretion system protein [Pseudomonas fluorescens
           Pf0-1]
 gi|77382217|gb|ABA73730.1| putative general secretion pathway protein D [Pseudomonas
           fluorescens Pf0-1]
          Length = 615

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 65/424 (15%), Positives = 146/424 (34%), Gaps = 54/424 (12%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
           P   E   A +      + +   ++   +K +   +      + V D    D V    + 
Sbjct: 183 PVTLEFRDANLKTIFEVLSQVAGLNFIFDKDLRPDMK---ATIFVRDVRIEDAVQLLLQQ 239

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLD--ILIERDIAHLEM-----TLRRFIADSNIRVE 139
             L  K V +  +++     +++ +    ++    +  ++       ++  +   ++ V+
Sbjct: 240 NQLHQKVVNENTLLIFPDSPQKLKDYQELVMRTFYLTSIDANTALNMIKTMLKTRDVFVD 299

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              +T+ +      ++ +++ ++  +    +          + + +              
Sbjct: 300 ERLNTLTMRDTEDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATQRI-------------- 345

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                        +G Q   T        S         + +    +   +    S +  
Sbjct: 346 -----------LDLGLQWPNTFGVVNSDGSAVT-----ILDQLKGINSSRISISPSPQAK 389

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVTTHDYG 313
           ++A  +   I TLA P +   + + A    G +          +        SVT  D G
Sbjct: 390 INA--QDNDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVTYLDVG 447

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + L   PTV     + ++I  EVS                   R A T++ L  G T +L
Sbjct: 448 LKLEVQPTVHLNNEVAIKIALEVSNATPLEPTRQGTIPVQVDTRNAQTSLRLHDGETQIL 507

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV---AMRDL 427
           AGL+++D       IP L  IP LG LF +++    ++E+ ++ TP +V+ +   +  D+
Sbjct: 508 AGLMRNDHGATGNKIPGLGDIPGLGRLFGSNKDTIGKSELVLSITPRIVRNLPYQSPSDM 567

Query: 428 SRPD 431
             P 
Sbjct: 568 EFPT 571


>gi|253688577|ref|YP_003017767.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|251755155|gb|ACT13231.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 689

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 63/452 (13%), Positives = 135/452 (29%), Gaps = 37/452 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            L       A+    +     V+ +     G    I +  N     +   + + V++   
Sbjct: 144 ALSGIGLLDARFGWGELPEEGVVLV----TGPQAYIDLIRNFSQQREKQDERRKVMIFPL 199

Query: 75  TKADVVVHS----PRTMYLFGKNVGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLR 128
             A V   +     + + +     G A ++  L+             +          +R
Sbjct: 200 RYASVSDRTLQYRDQKVTI----PGVATILNELMDGQRAAPAGASGPMPVQPDTGMEAMR 255

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLL 188
                   R+   ++          +  S +              ++   +  +++++ +
Sbjct: 256 DSTRSLMTRLATRNNPGRSGDASSRVTLSGKISADVRNNALLIRDDEKRRAEYQQLVDHI 315

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
           ++     V +   I +V R  L ++         +     +        FVS        
Sbjct: 316 DVPQNL-VNIDAIILDVDRTALSRLEANWQAQLGNVSAGSTMMMGRSTLFVS-------- 366

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
              D   F   + ALE       +A P++  +  Q A                     + 
Sbjct: 367 ---DFKRFFADIQALEGEGTASIVANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQ 421

Query: 309 THDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGG 366
               G  L  TP V+  G +  +++  ++ +  +        S   R    T   +    
Sbjct: 422 PVTAGTSLQVTPRVVGEGAQRSIQLVIDIEDGQVETGREGEASGVKRGTVSTQALIGENR 481

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +VL G   ++       IP+L  IP+LG LF ++R      E     TP LV      D
Sbjct: 482 ALVLGGFHVEESGDRDRRIPILGDIPLLGKLFTSTRHEVSRRERLFILTPHLV-----GD 536

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
            + P  + S  +  +      +N++      +
Sbjct: 537 QTDPTRYVSSANRQQ--LNGAMNRVAQRNGKT 566


>gi|257487241|ref|ZP_05641282.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
 gi|238577781|gb|ACR46692.1| HrcC [Pseudomonas syringae pv. tabaci]
 gi|331009145|gb|EGH89201.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 699

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S G   +           + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|313200626|ref|YP_004039284.1| type II and iii secretion system protein [Methylovorus sp. MP688]
 gi|312439942|gb|ADQ84048.1| type II and III secretion system protein [Methylovorus sp. MP688]
          Length = 645

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 59/353 (16%), Positives = 133/353 (37%), Gaps = 32/353 (9%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ ++        +       +  +    L   +       ++  +   ++ ++
Sbjct: 254 KVLNDNTLMIYP-------LSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKSKDVYID 306

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              +T+V+      I+ +++ +   +    +          +++ +  + I     V++ 
Sbjct: 307 EKLNTLVMRDTPEAIRTAEKLIMSQDMAEPEVVLEVEVLEINRRSLEAIGIRYPSAVSV- 365

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                              + G  +    +  +             S  GV         
Sbjct: 366 ------------------GVQGRDTVNGTTTLSPGELTVRELKNFNSDLGVFSISDPVLA 407

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316
           L+ L++ T    LA P +   + + A    G +    T  +++    + SV+  + G+ L
Sbjct: 408 LNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYIEVGIKL 467

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
              PTVL    + +++  EVS         +     +   R A+T + L +G T VLAGL
Sbjct: 468 DVEPTVLLNDEVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTMLRLKNGETQVLAGL 527

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L+DD Q++   +P L+ +P++G LF +   +R + EI +  TP ++  +   D
Sbjct: 528 LRDDEQKISNKVPGLANLPLIGKLFTDRNTDRTKKEIALLITPRIISNITPAD 580


>gi|312881261|ref|ZP_07741059.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309371153|gb|EFP98607.1| YscC/HrcC family type III secretion outer membrane protein [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 489

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 97/246 (39%), Gaps = 17/246 (6%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L+++  + + + VTI +V      Q+G   S      G S SF         S  
Sbjct: 252 SLIKQLDVS-PEMIEVSVTIIDVDTSDFNQLGIDWSAAAKIGGGSISFNQG------SMS 304

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D     + +  +F   L+ALE+ +  + L+ P++  ++   A          K      
Sbjct: 305 SDNFSTVIGNTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKV--EGE 362

Query: 303 GATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGV-----NAGDMPSYRVR 354
               + +   G +L  TP +++     R+ L +  +  +              +P     
Sbjct: 363 KVAKLESVTTGSLLRVTPRIVNEKHHQRVMLSLNIQDGQQTGQQKKAIGTNDALPQVENS 422

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +  T   L +G +++L G ++D  + ++  IPLL  IP+LG LFR++  + +        
Sbjct: 423 EIATQATLKTGESLLLGGFVQDKNKTVENKIPLLGDIPLLGGLFRSTNHSTQSVMRLFLI 482

Query: 415 TPFLVK 420
               VK
Sbjct: 483 KAEPVK 488


>gi|289623690|ref|ZP_06456644.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647636|ref|ZP_06478979.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|298485943|ref|ZP_07004018.1| type III secretion system outer membrane pore protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|37931591|gb|AAP72286.1| HrcC [Pseudomonas savastanoi]
 gi|298159529|gb|EFI00575.1| type III secretion system outer membrane pore protein [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330871294|gb|EGH06003.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 699

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 88/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S G   +           + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSAELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|33599773|ref|NP_887333.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
 gi|33567370|emb|CAE31283.1| putative type II secretion system protein [Bordetella
           bronchiseptica RB50]
          Length = 545

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 48/281 (17%), Positives = 97/281 (34%), Gaps = 41/281 (14%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------- 232
           + ++++         Q+ ++  + ++  +   + G   ++  +         A       
Sbjct: 265 AVEELIRRNQATIRRQIQVEAQLIDIELNDGFEFGVDWNLLTNHLSGRYGSGAITANTPA 324

Query: 233 -------------DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
                        +   + +               SF   L+AL    +++ L+ PT+  
Sbjct: 325 GTQPGSGLLPRSINIPAQVIGSAAGVGGGIGFANDSFSVALNALRSFGSVKVLSNPTVRV 384

Query: 280 ISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTVLSPGR 327
            +G  A  + G    Y T  S+T                  +   GVV+   P +   GR
Sbjct: 385 RNGVPAYLSVGANVRYVTEISTTFNNIGGGSSNSSSDVQTDSLFSGVVVGVAPFIHEDGR 444

Query: 328 IGLRIQTEVSEPVIGV---------NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           + L +    ++              N+  +P    +   TT+ L +G T+VL GL+    
Sbjct: 445 VELFVHPMQTQVQPQSLALVDVGNGNSVTLPIINTKSITTTLNLNNGDTVVLGGLIDQQF 504

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
               +G+P LS IP  G LF N   + +  E+ I     ++
Sbjct: 505 TNANKGLPGLSDIPGAGVLFDNRSDSHKSRELVIILRVRVI 545


>gi|163802024|ref|ZP_02195920.1| putative type III secretion protein YscC [Vibrio sp. AND4]
 gi|159174165|gb|EDP58973.1| putative type III secretion protein YscC [Vibrio sp. AND4]
          Length = 623

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 61/307 (19%), Positives = 110/307 (35%), Gaps = 35/307 (11%)

Query: 146 VLHG---MVRTIQDSQRA-VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED------- 194
           VL G    ++T      A    + T       +  A+  ++  +N + +           
Sbjct: 222 VLSGVQTQIKTTNQGDEAGANTTATTSKNVSVHGGASVEAEPGLNAIIVRDTQARLPLYH 281

Query: 195 ---------QVTLKV--TIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKFVS 240
                    Q  ++V  +I ++  + L Q+G        +   S        D  G  V+
Sbjct: 282 KLVAQLDQPQSRIEVALSIVDISANDLSQLGIDWRAGIGAGNNSVLDIKTTGDVAGGDVT 341

Query: 241 EGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
            G   + K +LD  +       +  LE   + + ++ PTL       A   +      K 
Sbjct: 342 LGSGQTFKSLLDVTNLNYLLAQIRLLESQGSAQVVSRPTLLTQENVEAVLNNSSTFYVKL 401

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352
           +   T A  +    YG +L   P ++         I L +  E    +      D+PS R
Sbjct: 402 IGKETAA--LEEVTYGTLLRIVPRIVGDRFVERPEINLSLHLEDGAQIPDGGVDDVPSIR 459

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +  T   +  G ++++ G+ +D+I      +PLL  IP LGALFR++      T    
Sbjct: 460 KTEISTLATVKQGQSLLIGGVYRDEISHQLRKVPLLGDIPYLGALFRSTTDTTRRTVRMF 519

Query: 413 AATPFLV 419
              P +V
Sbjct: 520 IIEPRIV 526


>gi|196232588|ref|ZP_03131440.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196223350|gb|EDY17868.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 880

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 68/377 (18%), Positives = 128/377 (33%), Gaps = 110/377 (29%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+ + ++        Q        +++     G  QV ++    E+++  LK++ F   +
Sbjct: 480 AIYIVKSSRLIVRNTQDQLDLVDTIISSGGGQGPVQVEIESKFVEIQQTNLKELSFDWLL 539

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD----------------------------------- 244
              ++  +K+     G    +   +                                   
Sbjct: 540 GQFNAPATKNVFLGGGTSGTAPALNPSDFPFVNGGVPVGNNPLTAGNRSGNLAISANAID 599

Query: 245 ----------------FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                            ++ GV     F+ V+ AL +   +  L+ P +T  SGQ A   
Sbjct: 600 ALLFPISGSSQVAPAIGAISGVFTDPQFQLVIRALNQKKGVDLLSSPKVTTKSGQRAVIE 659

Query: 289 SGGQHLYKTVSSS-----------------------------TGATSVTTHDYGVVLHFT 319
              +  Y T  +                              T  T+  T + GV L   
Sbjct: 660 IIREFRYPTEFTPPQIPQTFGNTGAGILGGGAATTGSFPVTPTTPTAFETRNTGVTLEVE 719

Query: 320 PTVLSPG-RIGLRIQTEV-------------------------SEPVIGVNAGDMPSYRV 353
           P +   G  I L +  +V                         ++ VI  N  + P +  
Sbjct: 720 PVIGPDGYTIDLNLVPQVVEFEGFINYGSPITSSVTNPITGVSTQAVITPNVINQPIFST 779

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           RK  T+V +  G T+VL GL+++D+Q++++ +P++  IPI+G LFR+S     +  + I 
Sbjct: 780 RKVTTSVSVYDGSTVVLGGLIREDVQKVEDKVPIIGDIPIVGRLFRSSVDQHIKRNLIIF 839

Query: 414 ATPFLV----KPVAMRD 426
            T  L+    +PV   D
Sbjct: 840 VTARLINAAGEPVRAED 856


>gi|238023720|ref|YP_002907952.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
 gi|237878385|gb|ACR30717.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia glumae BGR1]
          Length = 605

 Score =  143 bits (360), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 92/276 (33%), Gaps = 31/276 (11%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                    + ++  L++     V ++  I E+  + L+QIG      GS          
Sbjct: 332 DTPDRVGQYEDLIRQLDVR-PQIVEIQAHIIEIDDNTLQQIGVDWRAHGSHLDFQTGNGQ 390

Query: 233 DFGGKFVS------------------------EGGDFSVKGVLDRFSFETVLHALERATA 268
                F +                         G   S             ++AL+  + 
Sbjct: 391 AAQNSFSTGQLNPTFGSVQQAGPGSTIVNATPAGAAISAVVGGAGRYLLASVNALQSNSK 450

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326
            +  A P +  +    A+  +  +   +    ++    + +   GV L   P ++     
Sbjct: 451 AKIDATPLVATLDNVEATMDNTTKFYVRVQGYTSAD--LYSVSTGVSLRVLPLIVHDRDG 508

Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            RI L +  E           ++P     + +T   +  G ++++AG   D       G+
Sbjct: 509 TRIKLSVHIENGSLT-QQQVDNIPVITTSQINTQAFVGEGESLLIAGFTTDKTANGVTGV 567

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           P LSKIP+LGALFRN+       E     TP ++  
Sbjct: 568 PFLSKIPLLGALFRNNSDQHNHNETVFLLTPRIIDA 603


>gi|325983467|ref|YP_004295869.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
 gi|325532986|gb|ADZ27707.1| type II and III secretion system protein [Nitrosomonas sp. AL212]
          Length = 756

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 79/430 (18%), Positives = 149/430 (34%), Gaps = 56/430 (13%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD------------ 78
           E   A +      + +   I+   +K   ++    +  + V D T  D            
Sbjct: 194 EFKDADMRSVFEIMSRTAGINFVFDKD--IRQDGKIS-IFVRDNTIEDILKLILTTNQLA 250

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
             V +  ++ ++     +    L  +    + +  I    D+  +   +R  +   +I V
Sbjct: 251 YKVLNSNSLLIYPNTPAK----LKDYQELVVRSFQIAHT-DVKQMVAMVRGIVKAKDIYV 305

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               +  ++   +  I+ ++R V L                      N L    E +V L
Sbjct: 306 NEQLNLFIMRDTLEAIRLTERIVSL----------------------NDL---AEPEVVL 340

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
            V I E+ R     +G            + +         +S+     +K      + E 
Sbjct: 341 DVAILEISRANTFLLGPNFP-QSLQFNYAGNAVGGAPAALISQFNMPGLKSF--GMTSEA 397

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----TTHDYG 313
            +  +   +    LA P +   + + A    G +  + T +   G  S+     T  D G
Sbjct: 398 KIDFMHNLSIGDVLANPRIRVANREKAKIHVGEKRPFFTANVQPGINSIVTSTPTFIDLG 457

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVL 370
           V L   P + S   + ++I  EVS     V+       P    R A+T + +  G T VL
Sbjct: 458 VKLDVEPRIGSNNDVTMKITLEVSSSTQNVSGPGGATAPLVVTRNAETLLTVKDGETQVL 517

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           AGL++D      +G+  L  IP L  LF N    R + E+ +  TP +V+ +        
Sbjct: 518 AGLIQDSDTTNVKGLAGLLNIPGLDRLFSNQDVRRSKNEVVLLITPRIVRNLPNPTNQEN 577

Query: 431 DDHYSVEDDA 440
           + H+    +A
Sbjct: 578 EYHFGTASEA 587


>gi|182679972|ref|YP_001834118.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
 gi|182635855|gb|ACB96629.1| general secretion pathway protein D [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 803

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 104/239 (43%), Gaps = 9/239 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD--FSVK 248
               QV ++VT+AEV        G Q  +  S+       +A      +           
Sbjct: 542 RPPVQVEIEVTVAEVTLTDALNYGVQAYLNSSAGSLQMLGSAGISNASIPLVTPHPAVNL 601

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--- 305
            +    +   V++AL   T ++ L+ P+L  +  Q A    G Q    +  +++  T   
Sbjct: 602 MIGQIANPRVVINALSNITDVKVLSTPSLVVLDRQPAVLQVGNQVPILSQQATSTQTANP 661

Query: 306 ----SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               SV   D G++L+  P V + G + L I+ ++S           P+   R+  +T+ 
Sbjct: 662 AIVNSVNYKDTGIILNVLPRVNANGVVALDIEQQISAVTNPDPTNLTPTISQRRVRSTIA 721

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P+G T++LAGL+++     + G+P++SKI  L  L  N   +   TE+ +   P +++
Sbjct: 722 IPNGQTVLLAGLIQETTNGTRSGLPIISKIRFLNDLVTNHNSSDSRTELIMFIKPQILR 780


>gi|197286852|ref|YP_002152724.1| hypothetical protein PMI3025 [Proteus mirabilis HI4320]
 gi|227354961|ref|ZP_03839372.1| competence protein E [Proteus mirabilis ATCC 29906]
 gi|194684339|emb|CAR45956.1| putative exported protein [Proteus mirabilis HI4320]
 gi|227164748|gb|EEI49595.1| competence protein E [Proteus mirabilis ATCC 29906]
          Length = 371

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 106/318 (33%), Gaps = 32/318 (10%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
            R        V  V+  +  +G    I        ++    S S        +  ++ + 
Sbjct: 60  HRIYPLQYADVTTVAQQLTNYG----ISLLSDHGRIAIDKDSNSLSIIDTEKAHTEISDW 115

Query: 188 LNIAGE--DQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGK 237
           L I      QV +   I    +D L ++G Q  +         G+S+  +          
Sbjct: 116 LKIKETPQQQVHITAHIISSSQDALNELGTQWGLLNMKSANLEGTSNNTTTPHNIASAPL 175

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIR--------------TLAEPTLTAISGQ 283
                   ++             +     + +                +A P LTA   +
Sbjct: 176 TAPSLAALALHQKTKNPLHYIAFNIARINSRLLELELSALEQEKQLAIIASPRLTAAHEK 235

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG- 342
           +AS   G +     VS       V   +  + +  TP +    +I L ++   + P I  
Sbjct: 236 TASIKQGTEIP--YVSRDNDTIRVEFKEAVLGMEVTPIIQRSNKIRLLLKISQNTPGIAL 293

Query: 343 -VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                +  S   ++  T V +  G T++L G+ +   QQ    IP LS +P+LG LF + 
Sbjct: 294 VQGGSEHLSIDKQEIMTEVTIHDGETLMLGGIFQQKQQQHAAKIPFLSSLPLLGILFSHK 353

Query: 402 RFNREETEIFIAATPFLV 419
           R      E+ I  TP L+
Sbjct: 354 RDQHSRHELVIFITPKLI 371


>gi|29840703|ref|NP_829809.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
 gi|29835053|gb|AAP05687.1| general secretion pathway protein D [Chlamydophila caviae GPIC]
          Length = 753

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 46/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       S    +    + E       G   
Sbjct: 461 KKMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKSSMGISWASSGILEFLFKGSTGASL 520

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              ++     L     +R  A P++  ++   A      +     VS+           Y
Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579

Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           G+++   P +      G+  + ++T+++    G NA + P    R     V +P G T++
Sbjct: 580 GIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
           + GL    +   ++GIP L +IP +G LF  +  +  +TE+F+  TP ++  P   ++
Sbjct: 640 IGGLRCKHVSDSQDGIPFLGEIPGVGKLFGMNSTSDSQTEMFVFITPKILDNPAEKKE 697


>gi|284007632|emb|CBA73278.1| type III secretion outer membrane protein YscC,HrcC,mxiD,InvG,SsaC
           [Arsenophonus nasoniae]
          Length = 488

 Score =  143 bits (360), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 12/228 (5%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
               + + V+I +V      Q+G   S +    G + SF         + G D     + 
Sbjct: 261 APTMIEVSVSIIDVDASDFNQLGIDWSASAKIGGGTISFNQG------TSGSDNFSTVIG 314

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +  +F   L+ALE+ +  + L+ P++  ++   A          K          + +  
Sbjct: 315 NTGNFMVRLNALEKVSKAKILSRPSVVTLNNVQAVLDKNITFYTKL--QGDKVAKLESVT 372

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGT 367
            G +L  TP ++      ++ L +  E  +    +N  + +P  +  +  T   L +G +
Sbjct: 373 AGSLLRVTPRLIDSNGRKKVMLSLNIEDGQQTKAINDSEPLPQVQNSEIATQATLNTGES 432

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++L G ++D  Q ++  IPLL  +P++G LFR+   +++         
Sbjct: 433 LLLGGFVQDKDQTVQNKIPLLGDLPLIGGLFRSEDRSKQSVIRLFLIK 480


>gi|260221518|emb|CBA30162.1| hypothetical protein Csp_C22170 [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 520

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 66/356 (18%), Positives = 119/356 (33%), Gaps = 53/356 (14%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
           ++V +G  R++  S +A  L+   + +  R         K +     + E QV L+  + 
Sbjct: 171 SLVGNGEGRSVVASPQAGILAVRAMPEELRQV------DKFLKATQASVERQVMLEAKVV 224

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-------------------GGD 244
           EV      Q G       +      +      G   +                     G 
Sbjct: 225 EVELRDGYQSGVNWGAFNNDGSTQVAAGVIGSGVTSTNAFVQGTTTINGAVAFPSVATGG 284

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
                 L    F  VL  LE    ++TL+ P +  ++ Q A    G    + T  S    
Sbjct: 285 GLFGLALATSQFGAVLGFLETQGDVQTLSSPRVATLNNQKAVLKVGTDEFFVTNVSGGTN 344

Query: 303 --------------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNA 345
                            ++T    G+ L  TP +     + L +      V+E    ++ 
Sbjct: 345 SSSGTSSSTTTSTLPTVTLTPFFSGISLDVTPQIDDGVNVTLHVHPSLTTVTEKSKQIDL 404

Query: 346 GDMPSYR-------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           G   +++       V + DT V +  G  + + GL++ +  +   GIP  + +P LGALF
Sbjct: 405 GSAGNFKLPLASSAVNETDTLVRIQDGSIVAIGGLMQLESSRNASGIPGTTSMPGLGALF 464

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
            N      + E+ +   P +++     D            D       RV ++ GP
Sbjct: 465 GNRATQGRKKEVIVLIKPTIIR--TAADWEAQGRRARAAIDDMDATRARVIQLDGP 518


>gi|253998552|ref|YP_003050615.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
 gi|253985231|gb|ACT50088.1| type II and III secretion system protein [Methylovorus sp. SIP3-4]
          Length = 650

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 76/457 (16%), Positives = 165/457 (36%), Gaps = 40/457 (8%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV-- 79
           S  K P   E     I      I K   I+   ++ +          + + +    D   
Sbjct: 187 SAFKKPITLEFKDVPIKSVFEFISKAAGINFTYDQQM---SGEQRTSLFLRNTPIEDAIE 243

Query: 80  VVHSPRTMYLFGKNV-GQANVILIGHDGKQMLNLDILIERDIAHLEM-----TLRRFIAD 133
           V+ +   +    K V  +  +++      Q      +    + + E       ++  +  
Sbjct: 244 VILTSNQL---AKKVLNENTLMIYPLSRSQEYQEMYVRSFYLGNTEAKKAMNMIKTVVKT 300

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
            ++ ++   +T+V+      I+ +++ +   +    +          +++ +  + I   
Sbjct: 301 KDVYIDEKLNTLVMRDTPEAIRTAEKLITSQDMAEPEVVLEVEVLEINRRSLEAIGIRYP 360

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V++                    + G  +    +                S  GV   
Sbjct: 361 SAVSV-------------------GVQGRDTVNGTTTLTPGELTVRELKNFNSDLGVFSI 401

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTH 310
                 L+ L++ T    LA P +   + + A    G +    T  +++    + SV+  
Sbjct: 402 SDPVLALNLLQQDTDTNLLANPRIRVKNREKAKIHVGDRIPVLTSIANSTGFVSQSVSYI 461

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGGT 367
           + G+ L   PT+L    + +++  EVS         +     +   R A+T + L +G T
Sbjct: 462 EVGIKLDVEPTILLNDDVSIKVGLEVSNQTDKITSSSGTVTYTIGTRNANTILRLKNGET 521

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
            VLAGLL+DD Q++   +P L+K+P++G LF +   +R + EI +  TP +V  +   + 
Sbjct: 522 QVLAGLLRDDEQKISNRVPGLAKLPLIGKLFTDRSTDRTKKEIALLITPRIVSNITPAEA 581

Query: 428 SRPDDHYSVEDDAKAFFFNR-VNKIYGPKEASEVEGQ 463
                   V+ +  +    R VN+     +A  +  Q
Sbjct: 582 LYTAFPAGVDRNTGSNRNGRQVNESPAIAQAPLIPQQ 618


>gi|260778653|ref|ZP_05887545.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604817|gb|EEX31112.1| type III secretion system outer membrane pore YscC [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 484

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 91/228 (39%), Gaps = 12/228 (5%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
               + + VTI +V      Q+G   S      G S +F         S   D     + 
Sbjct: 259 TPTMIEVSVTIIDVDTSDFNQLGIDWSAAAKFGGGSVTFNQG------SLSSDNFSTVIG 312

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           +  +F   L+ALE+ +  + L+ P++  ++   A          K          + +  
Sbjct: 313 NTGNFMVRLNALEQNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKI--EGEKVAKLESVT 370

Query: 312 YGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
            G +L  TP +++     ++ L +  +  +    V++   +P     +  T   L +G +
Sbjct: 371 TGSLLRVTPRLVNENNFKKVMLSLNIQDGQQAKPVSSKDPLPQVENSEIATQATLKTGES 430

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           ++L G ++D    ++  IPLL  IP+LG LFR++  +++         
Sbjct: 431 LLLGGFVQDKDHTVENKIPLLGDIPLLGGLFRSTDHSKQSVMRLFLIK 478


>gi|325109742|ref|YP_004270810.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324970010|gb|ADY60788.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1315

 Score =  142 bits (359), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 56/314 (17%), Positives = 109/314 (34%), Gaps = 45/314 (14%)

Query: 151  VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRD 208
            V  ++   R + +    +S S          ++++ L++       +V ++  + EV  D
Sbjct: 863  VTNLEIMDREIIVVPETVSNSLLISATPRYFEEILTLVHRLDEKPPEVVIQALLVEVELD 922

Query: 209  ILKQIGFQHS----------------ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
               + G Q                     ++    +   A+          DF++  + +
Sbjct: 923  NDDEFGVQLGLQDSVLFDRSIDNTPGYNFNNQPLGRDTTANPSAVGTQALSDFAMGRLNN 982

Query: 253  RFSF------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F              ++ AL     ++ L+ PT+  +  Q A    G Q       +
Sbjct: 983  SLGFGGLVLAASSESVSVLIRALSAKRNVQILSRPTIRTLDNQLAQILVGQQVPIVDGVT 1042

Query: 301  STGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----------IGVNA 345
             TG        +     G++L  TP +   G I +      S                + 
Sbjct: 1043 ITGTIGIATPQIVQQQVGIILAVTPRISPDGSIVMETVATKSSLSDEGVPIFTDIETGSV 1102

Query: 346  GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             + P   +  A  TV +P+G T+VL G++  D    +  +P +  +PILG  FR    + 
Sbjct: 1103 IESPIINLTTAQATVSVPNGQTVVLGGMITKDEVSFRRNVPWIGDLPILGIPFRYEGKST 1162

Query: 406  EETEIFIAATPFLV 419
              TE+ I  TP ++
Sbjct: 1163 RRTELLIFLTPRVI 1176


>gi|313667332|ref|YP_004049733.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
 gi|313153963|gb|ADR37813.1| type II and III secretion system protein [Oceanithermus profundus
           DSM 14977]
          Length = 804

 Score =  142 bits (359), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 60/359 (16%), Positives = 114/359 (31%), Gaps = 20/359 (5%)

Query: 115 LIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           +   +   L   L + +        + V       G     Q        ++   +    
Sbjct: 441 VAYHNADALARLLTQILGAQTAMPAQEVQQGQAAEGGPTPPQSVPSLKITADPQTNTLLV 500

Query: 174 NQYANSSSKKVMNLLNIAGE-DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                + S  +     +    DQV  +V I EV R    ++G            S +   
Sbjct: 501 YGPRKTVSSALEFAKKLDRPADQVVSRVWIQEVDRSAANELGINWQYATGKFAISVTEGV 560

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
             GG         ++            +  LE+    R L +     ++ +  +  SGG+
Sbjct: 561 LTGGYDSGASALSALAQS---------IRLLEKTGRSRRLLDANTLTLNAEPTTLLSGGK 611

Query: 293 HLYK--------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
            L               TG T     +YG+ L  TP     G I L I T V        
Sbjct: 612 LLLPKQGDTGNVDGQEGTGGTGYEEFNYGLNLELTPYTSPDGTITLDIATTVGSLPQSGP 671

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
                      A++ + +  G  ++L G++ ++ +    G+P+L  IP++GALFR +   
Sbjct: 672 TPGSVLIPQSYAESRIRIKDGQAVILGGVISNEDRNDVSGVPILKDIPVIGALFRTTERV 731

Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
           + E  + I     ++K  +           ++    +    + V +  G  E +     
Sbjct: 732 QSERILLIIVQSHILKAESDGAGGVELPESALPS-GEYDRSSEVGEGAGMPEGALPTEP 789


>gi|328951048|ref|YP_004368383.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451372|gb|AEB12273.1| type II and III secretion system protein [Marinithermus
           hydrothermalis DSM 14884]
          Length = 523

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/426 (16%), Positives = 137/426 (32%), Gaps = 51/426 (11%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-----T 75
           P + +  P+   +   I     +   G  +S+   + +++    + Q + V         
Sbjct: 126 PVLRRFYPVPTGDPKQIADFLEQEISGLSVSVVPGQNVLVVRGAEAQQIEVQTLLNQLQK 185

Query: 76  KADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN 135
            A+      RT  L     G+   +L    G Q +   +    ++               
Sbjct: 186 PAEAPPLLQRTFQLSYAKAGELAKVLTEALGAQDVIDRLAGLENVDVSLTPPEDGSPTKP 245

Query: 136 IRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           I +  +  ++T+++ G           + + E  + +  +                    
Sbjct: 246 INIVADERTNTLIVTGTA-------EQIAVVEALIPKLDKP------------------V 280

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV LKV + EV   +   +G +       +  +          F +          L  
Sbjct: 281 QQVQLKVRVQEVDSQVFNNLGLKWDSLSGGNLIASVLDNGLNLIFDA-------TRSLAS 333

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-----------T 302
            +    L ALE+    R +++  L       AS     Q   K                 
Sbjct: 334 LNIVATLDALEKQNLARRVSDANLIIEDNFGASDEDLRQTGAKGAELKAGAKLLLPIRIG 393

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
           G   V   D G+ L   P + +  +I L + T+ +                +   + + +
Sbjct: 394 GEIEVREFDVGLTLRLRPQITADRQILLEVFTQ-TGGDPQSGPEGSILIPQKSTLSKLRI 452

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T+VL GL++  + + +  +P L  IPILG LFR +     +TE+ +  T  +V   
Sbjct: 453 KDGQTVVLGGLIERTVNKSENKVPFLGDIPILGMLFRQTSNEVRDTELLVVITANIVDNA 512

Query: 423 AMRDLS 428
              + S
Sbjct: 513 PSAEAS 518


>gi|330963696|gb|EGH63956.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 174

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 66/187 (35%), Positives = 93/187 (49%), Gaps = 23/187 (12%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG----VNAG 346
           G  +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  +      VN  
Sbjct: 6   GSEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTSTLDVNGY 65

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R 
Sbjct: 66  QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 125

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           ETE+ I  TP+LV+PV  R ++ P D                         +   G    
Sbjct: 126 ETELVILITPYLVEPVKARVVATPLDKQRAAS-------------------TASAGPRSG 166

Query: 467 GAIGFIY 473
           GA GF  
Sbjct: 167 GAFGFYM 173


>gi|224584676|ref|YP_002638474.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224469203|gb|ACN47033.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 532

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T         + + +    
Sbjct: 127 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRTY----NLRDQKIVI---- 174

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 175 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 228

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 229 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 287

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 288 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 335

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 336 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 393

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 394 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 453

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 454 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 496


>gi|313202169|ref|YP_004040827.1| type IV pilus secretin pilq [Methylovorus sp. MP688]
 gi|312441485|gb|ADQ85591.1| type IV pilus secretin PilQ [Methylovorus sp. MP688]
          Length = 714

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 103/283 (36%), Gaps = 48/283 (16%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++++N  +I  + QV ++  +        K +G +  +T  S+          G +    
Sbjct: 430 QQIINKTDIPVK-QVMIESRLVIADEKFGKSLGARFGMTQQSADGRNVIGGTLGNRITEV 488

Query: 242 GGDFSVKGVLDRFSFETVL---------------------HA------------------ 262
             D ++       + +T                       +A                  
Sbjct: 489 SSDGTITQGTHNGTIQTATTGSTATSSDGEPDLMSNLPVSNAYGNLAFTLLRLPAGLLLN 548

Query: 263 -----LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
                LE     + ++ P +T  + + A    G +  Y    SS+GATSV   D  + L 
Sbjct: 549 LELSALETDKRGKVVSSPRVTTANQKKAQIQQGTKIPYLRA-SSSGATSVQFVDATLSLE 607

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
            TP V    +I + +   + +  +G     +PS   +  DT V + +G T VL G+ +  
Sbjct: 608 VTPQVTPDDKIIMDLT--IKKDRVGQIFSGVPSIETQSVDTQVLVSNGETAVLGGIYEQT 665

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +   + +P    +P +G  F+      ++TE+ I  TP ++ 
Sbjct: 666 ERNDVDKVPFFGDLPFVGNAFKRRVRQNDKTELLIFITPKIMD 708


>gi|117924415|ref|YP_865032.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
 gi|117608171|gb|ABK43626.1| type II and III secretion system protein [Magnetococcus sp. MC-1]
          Length = 802

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 64/333 (19%), Positives = 115/333 (34%), Gaps = 35/333 (10%)

Query: 141 VSDTVVLHGMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
                 L+G   +         A +L    +      ++     +K++         QV 
Sbjct: 199 SGSNTTLNGDRSSALHHLDQPNAGDLDRVLVFYHPDQRHEVDRLQKIIKDSIDHPAPQVY 258

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--- 254
           ++  + EV  + LK++G   S        S S          + GG+             
Sbjct: 259 VEGMVLEVSDEGLKELGASLSSITRGGVNSLSLGVLSPVAVSAGGGNVFSFTRDGTNAAV 318

Query: 255 -SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305
            +    ++AL      + L+ P++  IS + A+        Y  + +ST A         
Sbjct: 319 NNALIKINALVSKGEAQILSRPSILTISNRQATIQVVDVVQYPVLQNSTDAVGNTILSSY 378

Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNA----------GDMPSYRVR 354
           S      G+ L+  P V + G  + L I   V   V   +           G  P    R
Sbjct: 379 SFEAVRPGITLNLRPRVTASGHEVNLEIDVTVESLVTANDGDVYNNSGTLLGTKPGSSSR 438

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIP----LLSKIPILGALFRNSRFNREETEI 410
           +  T   +P     ++ GL+  D +     IP    LL+ IPILGAL  ++     + E+
Sbjct: 439 RVQTFARIPDRMPFIIGGLVSTDREMTSNRIPVVGDLLADIPILGALVGSTLRQYTKREV 498

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAF 443
            I  TP ++       ++      +V  D++ F
Sbjct: 499 IIVLTPHILHDDDESIVA-----TNVPKDSEFF 526


>gi|303251572|ref|ZP_07337746.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307252115|ref|ZP_07534014.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302649570|gb|EFL79752.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860415|gb|EFM92429.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 221

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 5/199 (2%)

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
            +++  +   ++ AL+     + LAEP ++ +SG++A    GG+  +       G  SV 
Sbjct: 2   ALVNSNNLNVLISALDNQNNGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVL 60

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGG 366
             ++G+ L     V    RI L +   VS         +  +P +  R++ +T E+ +G 
Sbjct: 61  YKEFGIKLAVGAKVQKSDRIRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGE 120

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           + +++GLL     +  + +P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    
Sbjct: 121 SFIISGLLNKQDIEGIKKVPVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQ 180

Query: 427 LSRPDDHYSVEDDAKAFFF 445
           +  P   +      + FF 
Sbjct: 181 VLYPT--FENTGTMERFFN 197


>gi|289524045|ref|ZP_06440899.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502701|gb|EFD23865.1| putative bacterial type II/III secretion system short domain
           protein [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 589

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 70/412 (16%), Positives = 124/412 (30%), Gaps = 59/412 (14%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP---TKA 77
           P     P   E     +      + K   I+I ++  +    P     + V D       
Sbjct: 175 PMSLSTPVTLELRDTELKDVLRMLAKFMGINIIIDPSV----PPTTMTLSVKDAPLREVL 230

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHD-----GKQMLNLDILIERDIAHLEMTLRRFIA 132
             V+      Y     +G   +     +     G +      +   D   +   L+  I 
Sbjct: 231 AYVMRMNNLKY---AMMGNTILFGTPENLGKSLGMEQTKSFKIAYADPKQVPAILQSLIG 287

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            +N+ V+    TV + G    ++D ++                        ++  ++  G
Sbjct: 288 ITNVAVDERLRTVYVTGRPDNLRDVEQ------------------------LLQRIDHPG 323

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---------------- 236
             QV L+  + EVR    K++             S        G                
Sbjct: 324 R-QVMLQARLIEVRDTGRKELESIVDAVYKHWWFSYGAGGGSIGYVDSSEPENFDPDEDR 382

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
               +G D            +  +  L  +     LA P++  + GQ AS        Y 
Sbjct: 383 PTSPQGVDLVDITRGTLRILDVGIRNLVESNKADILASPSVVTVDGQKASIALTTNIKYI 442

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRV 353
           +     G    +    G  L FTP V     + + +     EV E   G    ++P    
Sbjct: 443 SERDDAGNPVYSEERVGPKLDFTPIVGRDDTVTINVAISTGEVVEWRPGGMGEEVPVTSS 502

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           R+  T V + +G   V+ GL           IP+L+ IP+LG +F+      
Sbjct: 503 REVTTMVRVRNGEPFVIGGLFDRRKTDTVSKIPVLADIPLLGEIFKTRTKRD 554


>gi|288818586|ref|YP_003432934.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|288787986|dbj|BAI69733.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
 gi|308752177|gb|ADO45660.1| general secretion pathway protein D [Hydrogenobacter thermophilus
           TK-6]
          Length = 665

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 58/271 (21%), Positives = 112/271 (41%), Gaps = 24/271 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------------PSKS 229
           K ++  +++    QV L  T+ E+       IG +  I G+  G             +  
Sbjct: 370 KSLIEKMDVR-RKQVLLAATVVEMSTSKALDIGVKWQIIGTQGGVSLGGGSLQDVYNAIL 428

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTAISGQSASFT 288
                 G   + G   ++ G    F    +L +L  + +    ++ P +  +  Q+A   
Sbjct: 429 SGNFIMGVLSTAGRTVTIGGTQLFFPDLLLLFSLLESGSGFNIVSNPKVLTLDNQTAEIK 488

Query: 289 SGGQHLYKTV----SSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVS--EP 339
            G    Y +      +     +    + G+ L  TPT+       +I L++Q  V    P
Sbjct: 489 VGQVVPYASGVKFDINGMPVITYDYKEVGLDLGVTPTISGKDLRLQINLKLQDIVDYIRP 548

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            IG  +  +P    R+ ++ V + +G TI++ GL+        +G+P L  IP LG +FR
Sbjct: 549 QIGTLSYAVPVTSNRQVNSDVVVENGQTIIIGGLVNTKTLTSTQGVPGLKDIPGLGRIFR 608

Query: 400 NSRFNREETEIFIAATPFLV-KPVAMRDLSR 429
                 ++  +FI  TP+++ KP  + +++R
Sbjct: 609 RDTKTEDKVSLFIFLTPYVIEKPEELSEITR 639


>gi|195873613|ref|ZP_02697884.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|195633590|gb|EDX52004.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
          Length = 514

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 63/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                + E  +  + L   +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAENYAGGMSLQEAL 210

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478


>gi|71909017|ref|YP_286604.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
 gi|71848638|gb|AAZ48134.1| type II and III secretion system protein [Dechloromonas aromatica
           RCB]
          Length = 594

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 124/321 (38%), Gaps = 37/321 (11%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
            T +++   +  +E+ +      Q  +   ++ ++ +  +   QV ++ TI EV      
Sbjct: 276 STFREAASVIMNAESGVITVRATQKQHERIQEFLDRVGNSARRQVLIEATIVEVTLKDGY 335

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           Q G   +               F     +   + +            ++  L+     + 
Sbjct: 336 QQGINWTQLAR--------GGTFSFIGDALTKNATNLTYTKGGDPNALVTMLDTFGTTKV 387

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-----------TTHDYGVVLHFTP 320
           L+ P L+ ++ Q+A       ++Y +V + T  T+             +   G+V+  TP
Sbjct: 388 LSSPRLSVMNNQTALLKVVENYVYFSVKADTTTTANVGTTTAYTTTPQSVSVGLVVSVTP 447

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPSGGTIV 369
            +     + L ++  ++     V   +           +P  R R+ ++ + + SG   +
Sbjct: 448 QISDGDAVTLNVRPTITSVAREVQDPNPDLKKNSISNLVPVIRTREIESIMRVASGNIAI 507

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR---- 425
           L GL++D I    + +PLL +IPI G L  N     ++TE+ I   P ++K  ++     
Sbjct: 508 LGGLMEDKIDYQTQRVPLLGQIPIAGELVNNRNNAAQKTELVIFLRPVVIKDASLEGDYA 567

Query: 426 --DLSRPDDH-YSVEDDAKAF 443
                 P+D  ++   +A+ F
Sbjct: 568 NMRGFLPNDSFFAQPSEAQPF 588


>gi|284007665|emb|CBA73372.1| Type III secretion outermembrane pore forming protein
           YscC,MxiD,HrcC,InvG [Arsenophonus nasoniae]
          Length = 554

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 40/261 (15%), Positives = 82/261 (31%), Gaps = 24/261 (9%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
             +      +    +++N +    +    QV L + I ++ +    ++G     +  S  
Sbjct: 272 GSNSLLAKGSIQGIQLINEMIQRLDQPKRQVELSLWIIDIAKHEADRLGIDWQSSYHSKD 331

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +                            F   + A+    +   ++ P +       A
Sbjct: 332 GNFLLNTSDISAAA-------------GIHFLAKIRAMSMEGSAHMVSRPIILTQENTPA 378

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-----IGLRIQTEVSEPV 340
            F +      +         ++ +  +G ++   P +   G      I L    E     
Sbjct: 379 IFDNSTTFYAQV--RGERIATLESATFGTMISVVPRLSPTGDEIEMVINLEDGAEKKTNS 436

Query: 341 IGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 D +P        T   +  G ++++ G  ++DI   +  IPLL  IP +G LFR
Sbjct: 437 GETEKIDALPVINRTNISTVARVAQGDSLLIGGYTREDIDSSESKIPLLGDIPWIGGLFR 496

Query: 400 NSRFNREETEIFIAATPFLVK 420
            S    ++        P LVK
Sbjct: 497 FSSTTNKKMVRIFMLQPRLVK 517


>gi|104781918|ref|YP_608416.1| secretion type II protein [Pseudomonas entomophila L48]
 gi|95110905|emb|CAK15621.1| Putative secretion type II protein related to gspD (secretin)
           protein [Pseudomonas entomophila L48]
          Length = 611

 Score =  142 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 140/437 (32%), Gaps = 71/437 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80
           P   E   A +      + +   I+   ++ +   +      + V +    D V      
Sbjct: 183 PVTLEFRDANLKTIFEVLAQVAGINFIFDRDLRPDMK---ATIFVREVRIEDAVALLLEQ 239

Query: 81  ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       L+  +   
Sbjct: 240 NQLRQKIVNDNTLLVYPDSPQKTK-----DYQELVMRTFYLTSIDANTAMNMLKTMLKTR 294

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +   +         
Sbjct: 295 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 345

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                             +G Q   T           +        +    S+       
Sbjct: 346 ----------------LDLGLQWPNTFGVLTSDGKSVSVLDQLRGIDSSRISI-----SP 384

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A  +   I TLA P +   + + A    G +          +        SVT
Sbjct: 385 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 442

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 443 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 502

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +   
Sbjct: 503 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 560

Query: 426 DLSRPDDHYSVEDDAKA 442
                   Y    D + 
Sbjct: 561 --------YQSPSDMEF 569


>gi|313498582|gb|ADR59948.1| Type II and III secretion system protein [Pseudomonas putida
           BIRD-1]
          Length = 621

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A +      + +   I+   +K +   +      + V +    D        
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDLK---ATIFVREVRIEDAIALLLEQ 243

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       ++  +   
Sbjct: 244 NQLRQKIVNDNTLMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +   +         
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                             +G Q   T        +  +      + +    +   +    
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A  +   I TLA P +   + + A    G +          +        SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +   
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564

Query: 426 DLSRPDDHYSVEDDAKA 442
                   Y    D + 
Sbjct: 565 --------YQSPSDMEF 573


>gi|270284835|ref|ZP_06194229.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Nigg]
 gi|270288864|ref|ZP_06195166.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum Weiss]
 gi|301336215|ref|ZP_07224417.1| Type III secretion structural protein (outer membrane ring)
           [Chlamydia muridarum MopnTet14]
          Length = 918

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 564 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 623

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       V +                                G      G++  
Sbjct: 624 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 683

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 684 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 743

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 744 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 802

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  +   R++  I I   P ++
Sbjct: 803 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 862

Query: 420 KPVAMRDLSRPDDHYS 435
                  +    + Y 
Sbjct: 863 SSFEEGTVLSNSEGYR 878


>gi|71737444|ref|YP_273539.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557997|gb|AAZ37208.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|170523102|gb|ACB20761.1| type III outer-membrane secretion protein HrcC [Pseudomonas
           syringae pv. glycinea]
 gi|320322961|gb|EFW79051.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320329916|gb|EFW85904.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330874593|gb|EGH08742.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 699

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S G   +           + G  S   + +   F + LHALE   +   +  P++ 
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|284008887|emb|CBA75707.1| protein transport protein HofQ [Arsenophonus nasoniae]
          Length = 347

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/229 (20%), Positives = 85/229 (37%), Gaps = 5/229 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK-GVLD 252
            QV +   I    R+ L ++G    ++            +      S     +     + 
Sbjct: 119 QQVQITAYIINTSREALYELGIFWELSSDKINQVGISRLNIHQPAPSSIPHIAFNIAKIK 178

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  L ALE+   +  +A P L A    SAS   G +     +  S   + +   + 
Sbjct: 179 SHLLSLELSALEQENQLSIIASPRLMASHNHSASIKQGTEIP--YIIQSKNKSQIKFKEA 236

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVL 370
            + +  TPT+L  G++ L ++   + P      N     +   ++  T V +  G T++L
Sbjct: 237 ILGMEVTPTILRGGKVRLALKISQNTPNTSLLANTYQHIAINKQEISTQVTINHGETLIL 296

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+ +      ++ IP L+ IP  G LF          E+ I  TP L+
Sbjct: 297 GGIFQQKKNNQQQKIPYLADIPFFGQLFTKDGKQTYHRELVIFITPQLI 345


>gi|170738269|ref|YP_001779529.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169820457|gb|ACA95039.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 588

 Score =  142 bits (357), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 45/259 (17%), Positives = 93/259 (35%), Gaps = 26/259 (10%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS--------------------- 222
           ++  L++     + ++  I EV    ++Q+G   +   S                     
Sbjct: 331 LIQRLDVK-PRLIEIEAHIFEVDTSSIRQLGVNWTAHNSHIDLQTGNGLGAQNTYGGTLT 389

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            +  + + A +     +  GG  S             + ALE     +  A P +T +  
Sbjct: 390 QNFGNTTLAGNVTAAAMPVGGVLSAVIGNAGRYLMANVSALEEQNLAKIDASPKVTTLDN 449

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVI 341
             A   +  Q   +    ++    + +   GV L   P  V   GR  +++   + +  +
Sbjct: 450 IEADMANQTQFFVRVSGYTSAD--LYSVSTGVSLRVLPMVVDEGGRTQIKLDVAIQDGQL 507

Query: 342 GV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 ++P       +T+  +  G  +++AG   D       G+P+LSKIP++G LF+ 
Sbjct: 508 TSRTVDNIPVISSTNINTSAFVNEGEALLIAGYKNDGRIDTTTGVPVLSKIPVIGNLFKY 567

Query: 401 SRFNREETEIFIAATPFLV 419
           +       E     TP ++
Sbjct: 568 TDRENTRMERLFLLTPRII 586


>gi|239814080|ref|YP_002942990.1| general secretion pathway protein D [Variovorax paradoxus S110]
 gi|239800657|gb|ACS17724.1| general secretion pathway protein D [Variovorax paradoxus S110]
          Length = 774

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/262 (19%), Positives = 94/262 (35%), Gaps = 26/262 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF------------ 238
               QV ++  I EV        G Q      ++    + ++                  
Sbjct: 415 GRRAQVMIEALIVEVSAKKAANFGVQWQSALGNNAVIGTNSSLASANILALTQALATRDV 474

Query: 239 ----VSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                S G +  + G +        + +          L+ P L  +  + A    G   
Sbjct: 475 ANVRPSSGLNLGIAGKIGGQYILGAIANFFNSDGDANVLSTPNLLTLDNEEAKIVIGQNV 534

Query: 294 LYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVN 344
            + T   +           T+V   D G+ L   PT+   G + + I  E S      +N
Sbjct: 535 PFVTGQYASTSGSVGINPFTTVERKDVGLTLRVRPTINENGTVKMTIFQETSTVDGNTIN 594

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             + P+   R  +++V +  GG ++L GLL DD     E +P+   IP+LG LF+N    
Sbjct: 595 NPNGPTTNKRSIESSVLVEDGGLVMLGGLLSDDYGNTIEKVPVAGDIPVLGNLFKNEIRT 654

Query: 405 REETEIFIAATPFLVKPVAMRD 426
           R ++ + +   P +++  A  +
Sbjct: 655 RNKSNLMMFLRPAVMRDGASTE 676


>gi|257487974|ref|ZP_05642015.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 170

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 65/187 (34%), Positives = 92/187 (49%), Gaps = 23/187 (12%)

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV----NAG 346
           G  +   V  +     +    YGV L F+PT+L  GRI L+++ EVS  +       N  
Sbjct: 2   GGEVAVPVPVNREVVGIEYKPYGVSLLFSPTLLPNGRIALQVRPEVSSLMSTTTLDVNGY 61

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +PS+RVR+ADT VE+ SG T  +AGL + +  Q  + +P+L  +PILG LFR+ RF R 
Sbjct: 62  QVPSFRVRRADTRVEVGSGQTFAIAGLFQRESSQDMDKVPMLGDMPILGNLFRSKRFQRN 121

Query: 407 ETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYK 466
           ETE+ I  TP+LV+PV  R ++ P D                         +   G    
Sbjct: 122 ETELVILITPYLVEPVKDRVVATPLDKQRAAS-------------------TASAGPRSG 162

Query: 467 GAIGFIY 473
           GA GF  
Sbjct: 163 GAFGFYM 169


>gi|149926070|ref|ZP_01914333.1| putative type III secretion protein [Limnobacter sp. MED105]
 gi|149825358|gb|EDM84569.1| putative type III secretion protein [Limnobacter sp. MED105]
          Length = 530

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 103/306 (33%), Gaps = 12/306 (3%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
            +    I    VS +  +        +    V ++    + S   + A S      NL++
Sbjct: 200 LMMGERIGALPVSPSSGVKKKADDDPEKAEFVSVTADPRTNSILIRDAKSKYDYYKNLID 259

Query: 190 IAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                   + ++  + EV +  L ++G +  +           +       ++ G     
Sbjct: 260 QLDRQVAMIEVEAMMVEVDQKGLNELGLEFGLLSDRFAYDFPGSGVGRPSLIAAGA---- 315

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             ++D   F   L AL      + LA PT+      SA          +   S      V
Sbjct: 316 TSIVDPMRFMARLKALSADENAKVLARPTIVTQDNVSAYIDLSQTLYIQV--SGERVADV 373

Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
                G +L  TP V+      RI LRI+ +           +MP  +     T   +  
Sbjct: 374 IPITAGSLLQVTPRVVIDEQEERIFLRIEIQDGSLTENTQGINMPRVQNTSLSTQAVIQR 433

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVA 423
              I++ G  ++  +     +PLL  IP +G  F ++    +        TP L+ +P+ 
Sbjct: 434 EKAILIGGYNRESTEVNDYKVPLLGDIPYIGKAFTSTEKRTQTVARLFLITPRLIDRPIH 493

Query: 424 MRDLSR 429
             + +R
Sbjct: 494 DSESTR 499


>gi|16766204|ref|NP_461819.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|207858160|ref|YP_002244811.1| secretory protein [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|20141547|sp|P35672|INVG_SALTY RecName: Full=Protein invG; Flags: Precursor
 gi|16421446|gb|AAL21778.1| outer membrane invasion protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|206709963|emb|CAR34317.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|261248034|emb|CBG25867.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267995026|gb|ACY89911.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301159457|emb|CBW18975.1| type III secretion system secretory apparatus [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312913916|dbj|BAJ37890.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|323131250|gb|ADX18680.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326624629|gb|EGE30974.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332989770|gb|AEF08753.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 562

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|187251612|ref|YP_001876094.1| rcpA subunit [Elusimicrobium minutum Pei191]
 gi|186971772|gb|ACC98757.1| RcpA subunit [Elusimicrobium minutum Pei191]
          Length = 248

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 61/238 (25%), Positives = 102/238 (42%), Gaps = 21/238 (8%)

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L+    + V++   I E+   I   IGF                           G   +
Sbjct: 25  LHARKTNLVSVSADIVEISGSINSNIGFSWYNIFDF-------------AEKEIPGVLEI 71

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                + +  T L  +E     + L+ P +   +G +A+ + GGQ  +  V  +      
Sbjct: 72  GSFERKTALTTRLRLMENEGKAQILSNPKIVTRTGTNANISVGGQIPFPEV--NNQGVGT 129

Query: 308 TTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEP----VIGVNAGDMPSYRVRKADTTVE 361
           +  DYGV+L+  PT++      I L++  EVS P     + V +  +PS   R+ +T VE
Sbjct: 130 SMLDYGVILNVMPTIIPEQSNLINLQVNLEVSAPDYSRTVSVGSTTVPSINKRRVETQVE 189

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L SG T+V+ GL         + IPLL ++P++G LFRN     E+  +F+  T  +V
Sbjct: 190 LHSGETLVIGGLKSSSRNVSVDRIPLLGRLPLIGLLFRNKDTLDEQRSLFLFVTVEIV 247


>gi|300771988|ref|ZP_07081859.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300761374|gb|EFK58199.1| type II general secretion pathway D protein [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 624

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 46/244 (18%), Positives = 93/244 (38%), Gaps = 18/244 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V ++VT+ ++ +    + G +  +  S      S        F +   +  +  +   
Sbjct: 380 PMVLIEVTLLDINKGNTVKTGIKMGVADSIPQTGGSLFPALDFTFGAGSINRFLSFLGKN 439

Query: 254 FSFET---------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS--- 301
            +F            L ALE    +   + P L+ ++G  A  + G +  YKT + +   
Sbjct: 440 NAFNLGRVTPNFYVTLSALEANKNVEMRSIPKLSTLNGHQAKLSIGSKRYYKTTTQNVIP 499

Query: 302 ------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                       T  +  + +   P +    +I L+I  ++S+ V  V  G  P     K
Sbjct: 500 SLQTTTVTTEQFTPVEANMNIDIKPVISGDDQITLKITVDISDFVGTVKDGQPPPTSTSK 559

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ +   +   IVL G+ + +      G+PLLS+IP+L  LF +      +    +   
Sbjct: 560 FESIIRARNEDMIVLGGIERTENSSSGSGVPLLSRIPVLKWLFSSREKTTNKVVSVVFIK 619

Query: 416 PFLV 419
           P ++
Sbjct: 620 PTII 623


>gi|56414850|ref|YP_151925.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197363778|ref|YP_002143415.1| virulence secretory protein [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|56129107|gb|AAV78613.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095255|emb|CAR60806.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 562

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|197286525|ref|YP_002152397.1| type III secretion system protein [Proteus mirabilis HI4320]
 gi|194684012|emb|CAR45306.1| type III secretion system protein [Proteus mirabilis HI4320]
          Length = 571

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L + I ++ +     +G     +  S   +  F                      
Sbjct: 318 KRQVELSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            FSF + + AL      + ++ P L       A F +      +         S+ +  +
Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422

Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G ++   P + +  +     I L    E    +         +P        T   +  G
Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G++++ G  ++D  + +  IP LS IP++G  F     N ++        P L+      
Sbjct: 483 GSLLIGGYTREDNIKAENKIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542

Query: 426 DLSRPDDHYSVEDD 439
            L    +H  +  D
Sbjct: 543 GLDSLTEHPFLPMD 556


>gi|161615810|ref|YP_001589775.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161365174|gb|ABX68942.1| hypothetical protein SPAB_03601 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 553

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 148 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 195

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 196 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 249

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 250 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 308

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 309 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 356

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 357 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 414

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 415 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 474

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 475 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 517


>gi|220932103|ref|YP_002509011.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
 gi|219993413|gb|ACL70016.1| type II and III secretion system protein [Halothermothrix orenii H
           168]
          Length = 385

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 18/254 (7%)

Query: 169 SQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
                     +  +K++NL+        Q+ + V ++EV    LK++G           P
Sbjct: 145 GDMLSISAPPTKMEKIINLIKRIDKPRKQIKITVVVSEVSTKELKKLGTGFLEYREKDNP 204

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           S +   D     ++              +  T L  L+     +  A+P++  + G+ A 
Sbjct: 205 SLNLKYDGSSLVLNGNIF---------ENLLTRLEILQEEEKAKIHADPSIVVMDGEPAE 255

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG 346
               G+     ++             G+ L  TP ++S   + L     +S  V      
Sbjct: 256 LFI-GEKQTLFITEDEEIEYFKDIKVGISLKVTPRLISKDEMILDFSPSISHFVNS---- 310

Query: 347 DMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
            +P   VR+   DTTV + SG T V+AG+   D    K+ +P L+KIP+L  LF     +
Sbjct: 311 KLPEIAVRENTLDTTVRVASGQTAVIAGMTLQDDYNYKKSVPGLNKIPLLRWLFTKKVND 370

Query: 405 REETEIFIAATPFL 418
             + E+ I  TP +
Sbjct: 371 TGDRELLIFVTPTI 384


>gi|317061875|ref|ZP_07926360.1| general secretion pathway protein D [Fusobacterium sp. D12]
 gi|313687551|gb|EFS24386.1| general secretion pathway protein D [Fusobacterium sp. D12]
          Length = 419

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
            K++  ++I G+ QV +   + ++ +D+  ++GF       S   +    S       G 
Sbjct: 164 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 222

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G  +++       +         LE    ++  + P +    G +  F    + +
Sbjct: 223 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 282

Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
                        +      + G++L   P +     + L I  E+S+            
Sbjct: 283 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 342

Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                  S   R   T + + +  T+ + GL +   +  +  +P L  IP +G LFR+  
Sbjct: 343 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 402

Query: 403 FNREETEIFIAA 414
               ETE++I  
Sbjct: 403 KKESETEMYIKI 414


>gi|62181400|ref|YP_217817.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|62129033|gb|AAX66736.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|322715884|gb|EFZ07455.1| invasion protein; outer membrane [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 562

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|238909665|ref|ZP_04653502.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 562

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|320087303|emb|CBY97068.1| Protein invG Flags: Precursor [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
          Length = 562

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|291615048|ref|YP_003525205.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291585160|gb|ADE12818.1| type II and III secretion system protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 560

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/396 (14%), Positives = 119/396 (30%), Gaps = 73/396 (18%)

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD---- 143
           YL G+  G++++ +    G    +         A       R    S + +   +D    
Sbjct: 154 YLTGQRDGRSSLRV--ASGSVADSAVTQGMPATAATGTNSNR--DSSKVTMTTSTDFWGE 209

Query: 144 -TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
            +  L  +V   +     +      +          + +   +    I+ + QV L+  I
Sbjct: 210 LSAALKAIVGDEKGRSVVISPMSGVIVIRAMPDELKNVAA-YLKASQISIDRQVILEAKI 268

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS---------------- 246
            EV+ +   Q G    +  +      +      G  +S GG  +                
Sbjct: 269 VEVQLNDSFQSGVNWGVFKNGPNSHVTAGIGSPGSTLSPGGAVASTLANTALTSTPGASL 328

Query: 247 -----------------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                                    +F  +L+ LE    +  L+ P +  ++ Q A    
Sbjct: 329 LPTATSLLPSSAVAGSLFGLAFQTSNFAALLNFLETQGNVHVLSSPRIATLNNQKAVLKV 388

Query: 290 GGQHLY-----------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           G    +             ++ ++    V     G+ L  TP +     I L +   VS 
Sbjct: 389 GTDEFFVTEVTGGTQATTAIAGTSPTVKVQPFFSGIALDVTPVIDENNEIILHVHPSVST 448

Query: 339 PVIGVNAGDMPSYR--------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
                   D+ +                V + D+ V    G  + + GL++        G
Sbjct: 449 VTTVNKTVDLGTSNGVSNIFNLPLASSSVSETDSIVRARDGQIVAIGGLMRQAEVNDDSG 508

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P L K     ++F  +  + E+ E+ I   P +V 
Sbjct: 509 LPGLPK-----SIFGQTSKHTEKRELVILLKPTVVD 539


>gi|257464370|ref|ZP_05628747.1| general secretion pathway protein D [Fusobacterium sp. D12]
          Length = 435

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 88/252 (34%), Gaps = 20/252 (7%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGG 236
            K++  ++I G+ QV +   + ++ +D+  ++GF       S   +    S       G 
Sbjct: 180 DKIIQEIDIEGK-QVKVYSQVLDISKDLFHELGFDWLYEKPSKQKNQFSVSVLGEESAGN 238

Query: 237 KFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                G  +++       +         LE    ++  + P +    G +  F    + +
Sbjct: 239 SGPVLGSKWNLIRQFSNAAEVLGLSFKLLEAKQDLKITSSPAILIAHGNTGEFKITEEVI 298

Query: 295 YKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA----- 345
                        +      + G++L   P +     + L I  E+S+            
Sbjct: 299 VGEKKEKKKGEHTSVEPIFKEAGLILKVVPYIHQDSSVTLDISLELSDFKYRQTNQKKDW 358

Query: 346 ---GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                  S   R   T + + +  T+ + GL +   +  +  +P L  IP +G LFR+  
Sbjct: 359 NFNSQGGSKIGRSLSTRIHVKNKETVFIGGLSRFTNRNTENKVPFLGDIPGIGHLFRSES 418

Query: 403 FNREETEIFIAA 414
               ETE++I  
Sbjct: 419 KKESETEMYIKI 430


>gi|26990190|ref|NP_745615.1| type II and III secretion system protein [Pseudomonas putida
           KT2440]
 gi|24985131|gb|AAN69079.1|AE016541_7 secretion protein, putative [Pseudomonas putida KT2440]
          Length = 621

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A +      + +   I+   +K +   +      + V +    D        
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       ++  +   
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +   +         
Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                             +G Q   T        +  +      + +    +   +    
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGINSSRISIAP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A  +   I TLA P +   + + A    G +          +        SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +   
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564

Query: 426 DLSRPDDHYSVEDDAKA 442
                   Y    D + 
Sbjct: 565 --------YQSPSDMEF 573


>gi|50121028|ref|YP_050195.1| type III secretion system protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|42560404|gb|AAS20364.1| HrcC [Pectobacterium atrosepticum]
 gi|49611554|emb|CAG75002.1| type III secretion protein [Pectobacterium atrosepticum SCRI1043]
          Length = 689

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 59/428 (13%), Positives = 130/428 (30%), Gaps = 43/428 (10%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQANV 99
            G    I +  N     +   + + V++     A V   +     + + +     G A +
Sbjct: 169 TGPKAYIDLIRNFSQQREKQDERRKVMIFPLRYASVSDRTLQYRDQKITI----PGVATI 224

Query: 100 I--LIGHDGKQML----NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           +  L+             + +  +  +  +  + R  +  + +            G   +
Sbjct: 225 LNELMDGQRAAPAGASGPMPVQPDTGMEAMRDSTRSLM--TRLATRTSPGR---SGEASS 279

Query: 154 IQDSQ-RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
                 +              ++   +  ++++  +++     V +   I +V R  L +
Sbjct: 280 RVTLSGKISADVRNNALLIRDDEKRRAEYQQLVEHIDVPQNL-VNIDAIILDVDRTALSR 338

Query: 213 IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +         +     +        FVS           D   F   + ALE       +
Sbjct: 339 LEANWQAQLGNVSAGSTMMMGRSTLFVS-----------DFKRFFADIQALEGEGTASIV 387

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLR 331
           A P++  +  Q A                     +     G  L  TP V+  G +  ++
Sbjct: 388 ANPSVLTLENQPAIVDFSRTAFITAT--GERVADIQPVTAGTSLQVTPRVIGEGAQRSIQ 445

Query: 332 IQTEVSEPVIGVNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +  ++ +  +        S   R    T   +     +VL G   ++       IP+L  
Sbjct: 446 LVIDIEDGQVETGREGEASGVKRGTVSTQALIGENRALVLGGFHVEESGDRDRRIPILGD 505

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           IP+LG LF ++R      E     TP LV      D + P  + S  +  +      +N+
Sbjct: 506 IPLLGKLFTSTRHEVSRRERLFILTPHLV-----GDQTDPTRYVSSVNRQQ--LNGAMNR 558

Query: 451 IYGPKEAS 458
           +      +
Sbjct: 559 VAQRNGKT 566


>gi|218988958|gb|ACL13621.1| invasion protein InvG [Salmonella enterica subsp. salamae serovar
           Sofia]
          Length = 562

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/336 (16%), Positives = 118/336 (35%), Gaps = 50/336 (14%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156
           +     +G++    +         L+  L++  A  NI++    D  ++++ G       
Sbjct: 233 MPAFSANGEKGKTANYAGGM---SLQEALKQNAAAGNIKIVAYPDTNSLLVKGT------ 283

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +++   +                  + ++  L++A    V L + I ++ +  L+++G  
Sbjct: 284 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTS 324

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S             +   G  +    + S    LD   F   ++ALE       ++ P 
Sbjct: 325 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 372

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE- 335
           L       A F +      K +       ++    YG ++   P   + G+I + +  E 
Sbjct: 373 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 430

Query: 336 ----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                 +     +   +P        T   +P G ++++ G  +D      + IP L KI
Sbjct: 431 GNDKTPQTDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 490

Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           P +G+LFR S  N+          P  +V P+    
Sbjct: 491 PFIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|194445131|ref|YP_002042139.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194470942|ref|ZP_03076926.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197248412|ref|YP_002147795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|198243599|ref|YP_002216867.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205356993|ref|ZP_02344010.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205358415|ref|ZP_02656026.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|194403794|gb|ACF64016.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|194457306|gb|EDX46145.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|197212115|gb|ACH49512.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197938115|gb|ACH75448.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205324767|gb|EDZ12606.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205334513|gb|EDZ21277.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|321223445|gb|EFX48511.1| Protein InvG precursor [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
          Length = 514

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478


>gi|474942|emb|CAA53049.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 562

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 134/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S                 G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GTITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|92116356|ref|YP_576085.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
 gi|91799250|gb|ABE61625.1| type II and III secretion system protein [Nitrobacter hamburgensis
           X14]
          Length = 773

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/360 (17%), Positives = 128/360 (35%), Gaps = 34/360 (9%)

Query: 95  GQAN-VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
           G  N     G  G +  +         + +                      +       
Sbjct: 381 GNTNSPSAAGGSGSRPPSGMGGAGGGFSKVSQQTTASGGAGAGTNTPTGGGALDSNSGGN 440

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN-IAGED-QVTLKVTIAEVRRDILK 211
            Q   + V ++   ++ +       ++ K +   L  +     QV +  TIAEV      
Sbjct: 441 GQPLMQGVRITPDVVNNTLLIYADQANYKIIQATLQQVDQPQLQVAIDATIAEVTLTNEL 500

Query: 212 QIGFQHSITGSSSGPSKSFAADFG-----------------GKFVSEGGDFSVKGVLDRF 254
             G Q  +T  + G   +  +                            +  +   L  F
Sbjct: 501 SYGVQSYLTSKNLGMKANQGSLLNTQSNAAPIPTSAGTTDLAGAAGSVANAFINRALPGF 560

Query: 255 SF--------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
           +F          +L AL   T+++ L+ P+L  I+ Q+A+   G      T +++    +
Sbjct: 561 NFLIGSEAQPAVILDALHAVTSVKVLSNPSLVVINNQTATLQVGDTVPVSTGTATVLNGN 620

Query: 307 ------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                 +   + G++L  +P +   G + L ++ E+S      ++   P+   R+  +++
Sbjct: 621 NNVVNSIDYRNTGIILRVSPRINVNGNVRLEVEQEISSVQPTASSTLTPTVAERRVKSSI 680

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            + SG T++LAGL+ +     + GIPLL +I  LG  F +       TE+ I   P +++
Sbjct: 681 SVASGQTVLLAGLISEQQNGGRSGIPLLDEIRGLGDAFAHQGKRGTRTELIIFIRPQIIR 740


>gi|42562008|gb|AAS20450.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 47/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               S G   +           + G  S   + +   F + LHALE   +   +  P++ 
Sbjct: 343 FNAGSVGGGVNLF---------DAGTSSTMFIQNAGKFSSELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGKIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|205357926|ref|ZP_02574228.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
 gi|205328766|gb|EDZ15530.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           4,[5],12:i:- str. CVM23701]
          Length = 556

 Score =  141 bits (355), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520


>gi|197263182|ref|ZP_03163256.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205360510|ref|ZP_02683952.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|197241437|gb|EDY24057.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|205349182|gb|EDZ35813.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
          Length = 514

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 317

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375

Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E       +     +   +P        T   +P G ++++ G  +D      + 
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478


>gi|205359783|ref|ZP_02832405.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|205342787|gb|EDZ29551.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
          Length = 556

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 359

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417

Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E       +     +   +P        T   +P G ++++ G  +D      + 
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520


>gi|76574829|gb|ABA47303.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 45/272 (16%), Positives = 87/272 (31%), Gaps = 15/272 (5%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S     S             G  +   + D   
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSINDFDR 350

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A                    +V +   G  
Sbjct: 351 FFADIQALEGQGVASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408

Query: 316 LHFTPTVLSPGRIG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           L   P  ++  +    ++  ++ +  +  +  G+ P  +     T   +    ++V+ G 
Sbjct: 409 LQVIPRTIAGAQPSRFQLIIDIEDGQLDRSRDGETPDVKRGTVSTQAVISENRSLVIGGF 468

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
             D+  Q  + +PLL  +P+LG+LF + R      E     TP L+            ++
Sbjct: 469 HVDETGQHHDKVPLLGDLPVLGSLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIATEN 528

Query: 434 YSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
              + D         N     K A      + 
Sbjct: 529 -RPQLDKALALSGSPNSRDRKKAAISNAFADL 559


>gi|205353841|ref|YP_002227642.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205273622|emb|CAR38609.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326628950|gb|EGE35293.1| Protein invG [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 9]
          Length = 562

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/403 (15%), Positives = 137/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A   +  + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVNFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + S    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E       +     +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|148547514|ref|YP_001267616.1| type II and III secretion system protein [Pseudomonas putida F1]
 gi|148511572|gb|ABQ78432.1| type II and III secretion system protein [Pseudomonas putida F1]
          Length = 621

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 64/437 (14%), Positives = 141/437 (32%), Gaps = 71/437 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADV------- 79
           P   E   A +      + +   I+   +K +   +      + V +    D        
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAIALLLEQ 243

Query: 80  -----VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       ++  +   
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +   +         
Sbjct: 299 DVFVDERLNTLTMRDTSDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                             +G Q   T        +  +      + +    S   +    
Sbjct: 350 ----------------LDLGLQWPNTFGVLSDDGNPVS-----VLDQLKGISSSRISIAP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A  +   I TLA P +   + + A    G +          +        SVT
Sbjct: 389 APQAKINA--QDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +   
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564

Query: 426 DLSRPDDHYSVEDDAKA 442
                   Y    D + 
Sbjct: 565 --------YQSPSDMEF 573


>gi|322614284|gb|EFY11215.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322621652|gb|EFY18505.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322624513|gb|EFY21346.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322628844|gb|EFY25627.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322633429|gb|EFY30171.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322635995|gb|EFY32703.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322639703|gb|EFY36388.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322650654|gb|EFY47059.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322654733|gb|EFY51052.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658954|gb|EFY55207.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322664479|gb|EFY60673.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668272|gb|EFY64429.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673748|gb|EFY69849.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322677809|gb|EFY73872.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322681361|gb|EFY77393.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322683763|gb|EFY79773.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323193848|gb|EFZ79051.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200318|gb|EFZ85400.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323205574|gb|EFZ90539.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323210085|gb|EFZ94988.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216388|gb|EGA01115.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323221135|gb|EGA05566.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323226957|gb|EGA11139.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323230759|gb|EGA14877.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323234890|gb|EGA18976.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323238929|gb|EGA22979.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323241629|gb|EGA25660.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323248224|gb|EGA32160.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251192|gb|EGA35065.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256076|gb|EGA39814.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263211|gb|EGA46749.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323264286|gb|EGA47792.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271112|gb|EGA54540.1| type III secretion system outer membrane pore InvG [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 562

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 157 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 204

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 205 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 258

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 259 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 317

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + +    LD   F   ++ALE     
Sbjct: 318 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 365

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 366 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 423

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 424 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 483

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 484 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 526


>gi|183600572|ref|ZP_02962065.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
 gi|188019849|gb|EDU57889.1| hypothetical protein PROSTU_04158 [Providencia stuartii ATCC 25827]
          Length = 562

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 40/235 (17%), Positives = 87/235 (37%), Gaps = 21/235 (8%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               QV L + I ++ R  L  +G    +   ++G +                 F+   +
Sbjct: 305 TRRRQVELSLWIIDITRSELDNLGVNWEVGTINTGNT--------------AFSFNRSTL 350

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +   F   + AL ++     ++ P L       A F +      K         ++   
Sbjct: 351 SNSTDFLLRVDALSKSGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGERIATLEQV 408

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
            YG ++   P + S  ++ + +  E      S+     N   +PS      +T   +   
Sbjct: 409 TYGTMVSVMPRISSGHQVEMEVNIEDGGEKQSKSGEVSNVEGLPSVNRTTINTVARIAQN 468

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            ++++ G  ++ + + +  IPLL  IP++G LF ++  N+++        P L+ 
Sbjct: 469 SSLLIGGYTREQVVENESHIPLLGDIPLIGGLFSHTSVNKQKMVRLFLIQPRLLD 523


>gi|194448425|ref|YP_002046858.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205359156|ref|ZP_02667567.2| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194406729|gb|ACF66948.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|205338023|gb|EDZ24787.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
          Length = 556

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 151 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 198

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 199 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 252

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 253 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 311

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + +    LD   F   ++ALE     
Sbjct: 312 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 359

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 360 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 417

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 418 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 477

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 478 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 520


>gi|200387736|ref|ZP_03214348.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204928222|ref|ZP_03219422.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|199604834|gb|EDZ03379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|204322544|gb|EDZ07741.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
          Length = 514

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + +    LD   F   ++ALE     
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478


>gi|30524891|gb|AAP34336.1|AF499777_4 HrcC [Xanthomonas axonopodis pv. glycines]
          Length = 607

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-------------GGKFVSEGG 243
            +  TI E+R   ++ +G         +       +                G     GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGSQLGFNGALSGAATDGATTPAGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|330894456|gb|EGH27117.1| type III outer membrane protein HrcC [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 703

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 57/405 (14%), Positives = 128/405 (31%), Gaps = 42/405 (10%)

Query: 45  GKGKKISIGLNKVIILQVPV--DVQDVLVSDPTKADVVVHS----PRTMYLFGKNVGQAN 98
           G  K + +  +    +  P   D QD++V     A     +     + + + G      +
Sbjct: 148 GPAKYVELVRDYSKKVDTPEKGDKQDIIVFPLKYASAADRTIRYRDQELVVAGVASILQD 207

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLR--RFIADSNIRVEMVSDTVVLHGMVR---- 152
           ++ +   G+ +   D++         ++    +      +    ++   +  G+ +    
Sbjct: 208 LLDVRSRGQSIKGTDLIGRGGRGTGGLSGGDGQDTPSLPLNASGINTGALEQGLDQVLHY 267

Query: 153 --------------TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
                           + + R                   +  +K++  L+++  + + +
Sbjct: 268 GSGGGGKSSGKSRSGGRATIRVPADVRNNAVLIYDLPSRKAMYEKLIKELDVS-RNLIEI 326

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
              I ++ R+ L ++  + +    S G   +           + G  S   + +   F  
Sbjct: 327 DAVILDIDRNELAELSSRWNFNAGSVGGGVNMF---------DAGTTSTMFIQNAGKFTA 377

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            LH LE   +   +  P++  +  Q                 S    ++     G  L  
Sbjct: 378 ELHTLEGNGSASVIGNPSILTLENQPGVIDFSRTEYLTAT--SERVANIEPITAGTSLQV 435

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           TP  L      ++ L +  E  +  I       PS R     T   +   G++V+ G   
Sbjct: 436 TPRSLDNDGKPQVQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHG 495

Query: 376 DDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            +       +PLL  IP +G  LF++        E     TP L+
Sbjct: 496 LEANDKVHKVPLLGDIPYIGKLLFQSRSRELSNRERLFILTPRLI 540


>gi|54294209|ref|YP_126624.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
 gi|53754041|emb|CAH15514.1| type II protein secretion LspD [Legionella pneumophila str. Lens]
          Length = 791

 Score =  141 bits (354), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T             + K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS--- 350
                ++++  T+    +  + L+  P +     I L+I           +  D  +   
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATSTTDNTTTPT 658

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 719 MVFIKPIILR 728


>gi|268592383|ref|ZP_06126604.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rettgeri DSM 1131]
 gi|291312169|gb|EFE52622.1| type III secretion outer membrane pore, YscC/HrcC family
           [Providencia rettgeri DSM 1131]
          Length = 567

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 37/243 (15%), Positives = 87/243 (35%), Gaps = 22/243 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           +++N L++    QV L + I ++ R  L  +G    +   ++G              +  
Sbjct: 303 QLVNTLDMR-RRQVELSLWIIDITRSELDNLGVNWEVGTFNTG--------------TGS 347

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             F+   + +   F   + AL +      ++ P L       A F +      K      
Sbjct: 348 VSFNRSTLSNSQQFLLQIDALNKTGNGHIVSRPVLLTQENIPALFDNNTSFYAKL--QGE 405

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV-----SEPVIGVNAGDMPSYRVRKAD 357
              ++    YG ++   P + +   + + +  E             +   +P+      +
Sbjct: 406 RIATLEQVTYGTMVSVMPRISAGNNVEMEVNIEDGAENRDSMGKTSSVEGLPAVNRTSIN 465

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T   +    ++++ G  ++   + +  IP L  +P +G LF +S  N+++        P 
Sbjct: 466 TVARIAKDSSLLIGGYTREQYVENESKIPFLGDLPYVGGLFSHSSMNQQKMVRLFLIQPR 525

Query: 418 LVK 420
           L+ 
Sbjct: 526 LLD 528


>gi|148358852|ref|YP_001250059.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|296106898|ref|YP_003618598.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
 gi|148280625|gb|ABQ54713.1| type II protein secretion LspD [Legionella pneumophila str. Corby]
 gi|295648799|gb|ADG24646.1| type II protein secretion LspD [Legionella pneumophila 2300/99
           Alcoy]
          Length = 791

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T               K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
                ++++  T+    +  + L+  P +     I L+I      +       +    P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 719 MVFIKPIILR 728


>gi|161502058|ref|YP_001569170.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863405|gb|ABX20028.1| hypothetical protein SARI_00075 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 563

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 116/336 (34%), Gaps = 50/336 (14%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD--TVVLHGMVRTIQD 156
           +     +G++    +         L+  L++  A  +I++    D  ++++ G       
Sbjct: 234 MPAFSANGEKSKTANYAGGM---SLQEALKQNAAAGDIKIVAYPDTNSLLVKGT------ 284

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           +++   +                  + ++  L++A    V L + I ++ +  L+++G  
Sbjct: 285 AEQVHFI------------------EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGAS 325

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
            S             +   G  +    + S    LD   F   ++ALE       ++ P 
Sbjct: 326 WS------------GSITIGDKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPV 373

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           L       A F +      K +       ++    YG ++   P   + G+I + +  E 
Sbjct: 374 LLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIED 431

Query: 337 SEPVI-----GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                       +   +P        T   +P G ++++ G  +D      + IP L KI
Sbjct: 432 GNDTTPQTEITASVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKI 491

Query: 392 PILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           P +G LFR S  N+          P  +V P+    
Sbjct: 492 PFIGGLFRYSSKNKSNVVRVFLIEPKEIVDPLTPDA 527


>gi|21241188|ref|NP_640770.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
 gi|21106496|gb|AAM35306.1| HrcC protein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 607

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 43/241 (17%), Positives = 84/241 (34%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-------------FGGKFVSEGG 243
            +  TI E+R   ++ +G         +       +                G     GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGNGSGGQLGFNGALSGAATDGATTPAGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|52841551|ref|YP_095350.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52628662|gb|AAU27403.1| type II protein secretion LspD [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 791

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T               K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
                ++++  T+    +  + L+  P +     I L+I      +       +    P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 719 MVFIKPIILR 728


>gi|302129976|ref|ZP_07255966.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato NCPPB 1108]
          Length = 699

 Score =  141 bits (354), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A               S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LV 419
           L+
Sbjct: 535 LI 536


>gi|293416358|ref|ZP_06658997.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291431714|gb|EFF04697.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 566

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 49/248 (19%), Positives = 96/248 (38%), Gaps = 20/248 (8%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           ++ LL++A    V L + I ++ ++ L+Q+G                 +      +    
Sbjct: 296 LVRLLDVAKRH-VELSLWIIDLNKNDLEQLGVAWG------------GSTSFSNKLDIAL 342

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           + ++   LD   F   ++ALE+    R +++P L       A F +      K +     
Sbjct: 343 NQTLVSTLDGVHFLASVYALEKKNQARIVSKPVLMTQENVPAIFDNNRTFYTKLIGERN- 401

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV----SEPVIGVNAGDMPSYRVRKADTT 359
            +S+    YG ++   P   + G I + +  E      + V G     +P        T 
Sbjct: 402 -SSLAHVTYGTMISVLPRFSADGEIEMSLNIEDGNEEKQSVSGNEDSVLPEVGRTHISTV 460

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-L 418
             +P G ++++ G  +D   +  + IPLL  IP++G LFR    N+          P  +
Sbjct: 461 ARVPQGKSLLIGGYTRDSRTKDVQKIPLLGDIPLIGGLFRYENQNQNNVVRVFLIQPKEI 520

Query: 419 VKPVAMRD 426
           + P+    
Sbjct: 521 LDPLMPDA 528


>gi|194736395|ref|YP_002115850.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197300771|ref|ZP_02660996.2| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194711897|gb|ACF91118.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197290685|gb|EDY30039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
          Length = 514

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 136/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 109 DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 156

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 157 PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 210

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 211 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 269

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + +    LD   F   ++ALE     
Sbjct: 270 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 317

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 318 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 375

Query: 330 LRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E       +     +   +P        T   +P G ++++ G  +D      + 
Sbjct: 376 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 435

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 436 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 478


>gi|162533078|ref|NP_791216.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213968270|ref|ZP_03396414.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
 gi|301383405|ref|ZP_07231823.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato Max13]
 gi|302061709|ref|ZP_07253250.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato K40]
 gi|119388972|gb|AAO54911.2| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tomato str. DC3000]
 gi|213926908|gb|EEB60459.1| outer membrane type III secretion hrcc [Pseudomonas syringae pv.
           tomato T1]
          Length = 699

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A               S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LV 419
           L+
Sbjct: 535 LI 536


>gi|237799995|ref|ZP_04588456.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331022850|gb|EGI02907.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 700

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 91/269 (33%), Gaps = 16/269 (5%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           + S R                      +K++  L++   + + +   I ++ R+ L ++ 
Sbjct: 281 RASIRVSADVRNNSVLIYDLPERKGMYQKLVKELDVP-RNLIEIDAVILDIDRNELAELS 339

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            + +          +  +  GG  + + G  S   + +   F   LHALE   +   +  
Sbjct: 340 SRWNF---------NAGSVSGGANLFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGN 390

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
           P++  +  Q A               S  A  +     G  L   P  L      ++ + 
Sbjct: 391 PSILTLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKSQVQMI 448

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  E  +  +       PS R     T   +   G++V+ G    +       +PLL  I
Sbjct: 449 VDIEDGQIDVSTINDTQPSVRRGNVSTQAMIAEHGSLVIGGFHGLEANDRIHKVPLLGDI 508

Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419
           P +G  LF++      + E     TP L+
Sbjct: 509 PYIGKLLFQSRSRELSQRERLFILTPRLI 537


>gi|330872930|gb|EGH07079.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 699

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A               S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LV 419
           L+
Sbjct: 535 LI 536


>gi|213425700|ref|ZP_03358450.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
          Length = 505

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 110/316 (34%), Gaps = 53/316 (16%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 196 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 246

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 247 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 275

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 276 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 335

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSY 351
            +       ++    YG ++   P   + G+I + +  E             +   +P  
Sbjct: 336 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 393

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 394 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 453

Query: 412 IAATPF-LVKPVAMRD 426
               P  +V P+    
Sbjct: 454 FMIEPKEIVDPLTPDA 469


>gi|15834670|ref|NP_296429.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
 gi|7190084|gb|AAF38934.1| type III secretion protein SctC [Chlamydia muridarum Nigg]
          Length = 672

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 113/316 (35%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q +  G   G
Sbjct: 318 INNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWAALGDEQG 377

Query: 226 PSKSFAADFGGKFVSE--------------------------------GGDFSVKGVLDR 253
                +       V +                                G      G++  
Sbjct: 378 KVAYASGLLSNTGVVDPLRNQTPPVAPNPGNISLPTPGQLAGISDMMYGSSAFGLGIIGN 437

Query: 254 ---------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 438 VLSHNGKSYLTLGGLLSALDQDGDTTVVLNPRIMAQDTQQASFFVGQTIPFQTTSTVIQE 497

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T T+     + L+I+  +SE          P      A T 
Sbjct: 498 TGSVTQNIEYEDIGVNLVVTSTIAPNNVVTLQIEQTISELHSAQGVLT-PVTDKTFAATR 556

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D + ++  G+PLLS +P++  LF  +   R++  I I   P ++
Sbjct: 557 LQVPDGCFLVMSGHIRDKLTKIVSGVPLLSSLPLIKGLFSRTIDQRQKRNIMIFIKPKVI 616

Query: 420 KPVAMRDLSRPDDHYS 435
                  +    + Y 
Sbjct: 617 SSFEEGTVLSNSEGYR 632


>gi|54297230|ref|YP_123599.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
 gi|53751015|emb|CAH12426.1| type II protein secretion LspD [Legionella pneumophila str. Paris]
          Length = 791

 Score =  140 bits (353), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 141/430 (32%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T               K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRILK 490

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
                ++++  T+    +  + L+  P +     I L+I      +       +    P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 659 FNISSIVTSVHVESGDIVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 719 MVFIKPIILR 728


>gi|329942358|ref|ZP_08291168.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287000|ref|YP_004421901.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|325507136|gb|ADZ18774.1| bacterial type II/III secretion system protein [Chlamydophila
           psittaci 6BC]
 gi|328815268|gb|EGF85256.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328914230|gb|AEB55063.1| general secretion pathway protein D, putative [Chlamydophila
           psittaci 6BC]
          Length = 885

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 531 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 590

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       ++                                     F +  + +
Sbjct: 591 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 650

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 651 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 710

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    TV     + L+I+  +SE          P      A T 
Sbjct: 711 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 769

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 770 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 829

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 830 SSFEEGTKLTNKEGYR 845


>gi|317050393|ref|YP_004111509.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
 gi|316945477|gb|ADU64953.1| type II and III secretion system protein [Desulfurispirillum
           indicum S5]
          Length = 506

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/241 (21%), Positives = 93/241 (38%), Gaps = 19/241 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-LD 252
            QV ++  I EV  +    +G   +   S+           GG F   GGD +   V   
Sbjct: 260 KQVLIEAQIFEVVLNDSHSLGIDWTNAFSAGSGVGIIGQATGGSFGLPGGDMATGVVQYT 319

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSV 307
           R +F  +L  +  A  +  L+ P +  ++ Q+A  +SG    +                +
Sbjct: 320 RNNFTGMLQVMRNAGNLEALSNPRIRVMNSQTAIISSGRITPFWTKRVDYSEVGGQINRI 379

Query: 308 TTHD-----YGVVLHFTPTVLSPGRIGLR--------IQTEVSEPVIGVNAGDMPSYRVR 354
            T+D      G+ +  TP +   G I L          + +      G      P   ++
Sbjct: 380 ETYDRRDVLSGISMGVTPVIAPDGSILLTVIPVSTNFEEIDQQTDSSGDLIVSAPVVNMK 439

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +A T + +     +V+ GL+    ++  + +  LS IP+LG LFR SR  +E  E+ I  
Sbjct: 440 EAGTIIRVQDNDMVVIGGLISTSTRRETQEVSGLSAIPLLGHLFRGSRDVQERRELVIFL 499

Query: 415 T 415
            
Sbjct: 500 R 500


>gi|297565761|ref|YP_003684733.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296850210|gb|ADH63225.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 771

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 54/253 (21%), Positives = 93/253 (36%), Gaps = 25/253 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L+V I  V   +++++G +       +  +          F +          L 
Sbjct: 527 KQQVQLQVRIQAVNSSVIRELGLKWETISGGNLVASILEKGLSLIFDA-------TRSLA 579

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ-----------------SASFTSGGQHLY 295
             +    L+ALE     R +++  L   SG                   A          
Sbjct: 580 SLNIRATLNALESQNLSRRISDANLLVESGYGNDTSDLRQANAAGAELKAGGKLLIVTTT 639

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
            + S   G  SV   D G+ L   P +   G+I L + T+  E    V A D     V  
Sbjct: 640 ASTSQGGGQQSVREFDVGLTLRLRPRITPDGQIILEVYTQTGE-QPQVLAPDRTFLPVNS 698

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             ++  +  G T+V+ GL++      +  +PLL  IPI+GALF+ +    ++ E+ +  T
Sbjct: 699 TLSSFRIKDGQTVVMGGLVQTTTTNTENKVPLLGDIPIIGALFKQTTAENKQEELIVIIT 758

Query: 416 PFLVKPVAMRDLS 428
             +VK        
Sbjct: 759 ANIVKEQQAATGQ 771


>gi|313847597|emb|CBY16585.1| putative general secretion protein [Chlamydophila psittaci RD1]
          Length = 907

 Score =  140 bits (353), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 553 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 612

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       ++                                     F +  + +
Sbjct: 613 KVAYASGLLSNTGLANPTKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 672

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 673 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 732

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    TV     + L+I+  +SE          P      A T 
Sbjct: 733 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 791

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 792 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 851

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 852 SSFEEGTKLTNKEGYR 867


>gi|7416860|dbj|BAA94087.1| hypersensitive response secretion protein [Xanthomonas oryzae pv.
           oryzae]
          Length = 605

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D+        T             S   ++  L+      + +  TI E+R  
Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379

Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
            ++ +G                   G          A   G     GG  +         
Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T + ALE     + ++ P +  +    A      Q   +    ++    +     GV 
Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P+V+     G++ L ++ E  +         +P     +  T   +  G ++++AG
Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D  +     +P LSKIP+LG LF++ + +    +     TP +V P
Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605


>gi|331015110|gb|EGH95166.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 699

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNTGSVG---------GGANLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A               S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LV 419
           L+
Sbjct: 535 LI 536


>gi|150026329|ref|YP_001297155.1| general secretion pathway protein D precursor [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772870|emb|CAL44354.1| Putative bacterial general secretion pathway protein D precursor
           [Flavobacterium psychrophilum JIP02/86]
          Length = 720

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 86/243 (35%), Gaps = 19/243 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF- 254
           + ++V + EV +    + GF   I         +   +      ++  +  +        
Sbjct: 477 ILIEVMLLEVSKSATIETGFSAGIGDKPVTTKGTVFPNSDIVLGAQTINKIINSFDGFGS 536

Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKT 297
                   +F   L A+E    ++  + P L+ ++G  A  +                  
Sbjct: 537 LNIGSVVPNFNLSLKAMESNGNLKIRSAPRLSTLNGHKAYLSIGETTYYVVTNQNFYGSQ 596

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
           +  ++   +    D  + +   P V   G+I + I+   S      V+    P    R+ 
Sbjct: 597 IPQTSEVKNYQPIDAELSVTIMPLVSGDGQITMDIKVIQSSFNGQKVDKNAPPGINSREF 656

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            + + +     IVL GL +        G+P+L++IPI+  LF + +      ++ +   P
Sbjct: 657 TSIIRVKDQDLIVLGGLEEKVKNDSGSGVPILARIPIIKWLFSSRKREDSNKKLTVLIKP 716

Query: 417 FLV 419
            ++
Sbjct: 717 TVI 719


>gi|89898772|ref|YP_515882.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
 gi|89332144|dbj|BAE81737.1| type III secretion general secretion pathway protein D
           [Chlamydophila felis Fe/C-56]
          Length = 908

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 554 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       +S                                     F +  + +
Sbjct: 614 KVAYASGLLSNTGISNPTKSTIPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    T+     + L+I+  +SE          P      A T 
Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 853 SSFEEGTTLTNKEGYR 868


>gi|77919277|ref|YP_357092.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
 gi|77545360|gb|ABA88922.1| type II secretory pathway, component HofQ [Pelobacter carbinolicus
           DSM 2380]
          Length = 767

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 72/398 (18%), Positives = 134/398 (33%), Gaps = 73/398 (18%)

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT-----LRRFIADSN 135
           V + +T+ ++ +            + ++     I+    ++H+E       LR  +    
Sbjct: 249 VLNSQTILVYPRT----------KEKEKQYEDRIIQVFYLSHIEAKKAVNLLRTILQTRK 298

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I V    + +V+        D    +EL+   L  S                     + +
Sbjct: 299 IYVHDELNAIVMR-------DKPEVIELARQILEASD------------------RNDSE 333

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V   + + EV    L  IG + S    S+G  ++     G    +   D    G      
Sbjct: 334 VVFDLELVEVSHRDLLDIGPKLSSYSISAGMGRTILDTDGNVVTNLVSDTLAAGGTTDTL 393

Query: 256 F-------------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                                +       LA P +   + + A    G +    T + ST
Sbjct: 394 VRSFSRLESFYTLPTATFDFAKTLIDSEILANPKIRVKNREKAKVHIGTKEPIVTTNIST 453

Query: 303 GA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG---VNAGDMPSYRVR 354
                  T+V   D GV L   P +     I  ++  EVS  +        G        
Sbjct: 454 TTGDVTSTNVQYIDVGVKLDVEPNIQLDDTIVTKLTLEVSSILEKEEIAGGGSALRISTT 513

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            A +++ L  G   ++ GL+++D+   ++ +P +  IPI+G LF      + ++EI ++ 
Sbjct: 514 NAGSSLILKDGERTIIGGLIRNDLSDTRDTLPFIGSIPIIGHLFTGRSKEKNKSEILLSI 573

Query: 415 TPFLVKPVAMRDLSRPD---------DHYSVEDDAKAF 443
           TP +V+ V   D+ RPD         D  +       F
Sbjct: 574 TPHIVRSV---DMPRPDVATIWSGGEDDLAPGARFARF 608


>gi|58579717|ref|YP_198733.1| hypothetical protein XOO0094 [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621739|ref|YP_449111.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|7350909|gb|AAC95122.2| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|9711580|dbj|BAB07849.1| HrpA [Xanthomonas oryzae pv. oryzae]
 gi|24251284|gb|AAN46403.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|50428343|dbj|BAD29980.1| HrcC [Xanthomonas oryzae pv. oryzae]
 gi|58424311|gb|AAW73348.1| HrcC protein [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|84365679|dbj|BAE66837.1| HrcC protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|118076671|gb|ABK60047.1| HrcC [Xanthomonas oryzae pv. oryzae]
          Length = 605

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 50/289 (17%), Positives = 94/289 (32%), Gaps = 20/289 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D+        T             S   ++  L+      + +  TI E+R  
Sbjct: 321 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 379

Query: 209 ILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
            ++ +G                   G          A   G     GG  +         
Sbjct: 380 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGGTLTAVLGDAGRY 439

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T + ALE     + ++ P +  +    A      Q   +    ++    +     GV 
Sbjct: 440 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 497

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P+V+     G++ L ++ E  +         +P     +  T   +  G ++++AG
Sbjct: 498 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQAFVNEGQSLLIAG 556

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D  +     +P LSKIP+LG LF++ + +    +     TP +V P
Sbjct: 557 YAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVSP 605


>gi|315918572|ref|ZP_07914812.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313692447|gb|EFS29282.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 419

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
             F ++ +F         +LP   E +   +  +  E+     I I +++       +  
Sbjct: 14  ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 73

Query: 61  QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           Q    +++VL       +  V   S     L    +            +++     L   
Sbjct: 74  QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 123

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               +   L+    D  I                 +    + + ++E         +   
Sbjct: 124 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 159

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
               K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + 
Sbjct: 160 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 218

Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V   G       +   +      +    L  LE    ++  + P++    G    F    
Sbjct: 219 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 278

Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
           + +           S +      + G++L   P +     + L I  E+S+         
Sbjct: 279 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 338

Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                     S   R   T + + +  TI++ GL +   +  +  +P LS IP LG LF+
Sbjct: 339 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 398

Query: 400 NSRFNREETEIFIAA 414
           +      ET+++I  
Sbjct: 399 SESKKDAETDMYIKI 413


>gi|257467448|ref|ZP_05631759.1| general secretion pathway protein D [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 435

 Score =  140 bits (352), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 68/435 (15%), Positives = 141/435 (32%), Gaps = 62/435 (14%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
             F ++ +F         +LP   E +   +  +  E+     I I +++       +  
Sbjct: 30  ILFALICLFTLEEVCYAKELPKDIEMSDTTLREALDELEGCLGIKITVDESPKDPLNLFF 89

Query: 61  QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           Q    +++VL       +  V   S     L    +            +++     L   
Sbjct: 90  QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               +   L+    D  I                 +    + + ++E         +   
Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
               K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + 
Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234

Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V   G       +   +      +    L  LE    ++  + P++    G    F    
Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294

Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
           + +           S +      + G++L   P +     + L I  E+S+         
Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNQK 354

Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                     S   R   T + + +  TI++ GL +   +  +  +P LS IP LG LF+
Sbjct: 355 KDWNFNAQGGSKMGRSLSTRIHVKNKETILIGGLSRSTHRNTENRVPFLSDIPGLGYLFK 414

Query: 400 NSRFNREETEIFIAA 414
           +      ET+++I  
Sbjct: 415 SESKKDAETDMYIKI 429


>gi|294625827|ref|ZP_06704443.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292599855|gb|EFF43976.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
          Length = 607

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
            +  TI E+R   ++ +G              G   G    F     G          GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|16761675|ref|NP_457292.1| virulence associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143159|ref|NP_806501.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213052440|ref|ZP_03345318.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213612699|ref|ZP_03370525.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|25512784|pir||AF0852 secretory protein (associated with virulence) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503976|emb|CAD06005.1| secretory protein (associated with virulence) [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29138792|gb|AAO70361.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 562

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 253 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 303

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 304 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 332

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 333 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 392

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
            +       ++    YG ++   P   + G+I + +  E       +     +   +P  
Sbjct: 393 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 450

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 451 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 510

Query: 412 IAATPF-LVKPVAMRD 426
               P  +V P+    
Sbjct: 511 FMIEPKEIVDPLTPDA 526


>gi|159024044|gb|ABW87272.1| HrcC [Xanthomonas fuscans subsp. fuscans]
          Length = 607

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
            +  TI E+R   ++ +G              G   G    F     G          GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|218961675|ref|YP_001741450.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730332|emb|CAO81244.1| hypothetical protein; putative signal peptide [Candidatus
           Cloacamonas acidaminovorans]
          Length = 472

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 60/256 (23%), Positives = 105/256 (41%), Gaps = 32/256 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-----------SSSGPSKSFAADFGGKFVSEG 242
            Q+ ++V + EV  +  KQIG   S              +  G    +       ++  G
Sbjct: 191 QQIEIRVRLIEVHLNEAKQIGVDWSKLNHLTTILAEDPVNQYGTGLPYNYSDATGYLPHG 250

Query: 243 GDFSVKGVLDR-------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283
                  + D                     +F+  +  L    A + L +  +TA++G+
Sbjct: 251 DPTDFGVIPDEQYFQRINGFHDIGHFSRQLTAFDVTIDWLLENNAAQLLTDTRVTALNGE 310

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            A+    G+ +   V+       V   + G++L+ TP V   G I + I  EVS     V
Sbjct: 311 LATM-HIGEVVPFVVTDKENQLQVERSETGIILNVTPKVNKDGNITMNINPEVSSVTELV 369

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               +P  +VR+  + V +P+   I++ GLL  +I Q    IPLL  +P++G +F++   
Sbjct: 370 GGY-IPRTKVRRVSSAVTVPNEHKIIVGGLLNSNITQKINKIPLLGDLPLIGKIFQHRYE 428

Query: 404 NREETEIFIAATPFLV 419
             E T++ I  TP LV
Sbjct: 429 LVENTDLIIEITPRLV 444


>gi|171913118|ref|ZP_02928588.1| probable general secretion pathway protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 888

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 67/292 (22%), Positives = 117/292 (40%), Gaps = 35/292 (11%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +    L+ +        +  KV  LL+       QV L   I ++      Q+G  +  
Sbjct: 538 RIIADPLANAIIVIGPKENQDKVDLLLDKLDRKSPQVYLATVIGQLTLSDGMQMGVDYLQ 597

Query: 220 TGSSSGPSKSFAA--------------------DFGGKFVSEGGDFSVKGVLDRFSFETV 259
              S+G +   ++                    +     ++    F++ G L   S +  
Sbjct: 598 KFVSTGSNSGLSSAFIAGREEIITNNNVADMRDNLITTALANAKGFNIYGQLG-QSLDVF 656

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS----------SSTGATSVTT 309
           + ALE     + L+ P++ A++ + A  TSG        S          +    T++T 
Sbjct: 657 VSALETTNNFKVLSRPSVFALNNKRAVITSGQSIPVPESSLANASSNNNGTGNVTTTITY 716

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG--VNAGDMPSYRVRKADTTVELPSGGT 367
            D  + L   P +   G + LR+       V    V   ++P     +  TTV +P+G T
Sbjct: 717 KDVVLKLEVIPLINPDGDVTLRVAQVNDTVVGNQIVAQNNVPIIGTEQIATTVTVPTGNT 776

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +VL GL+ +  ++  EGIP+LS+IP LG LFR    ++E  E+ I   P +V
Sbjct: 777 VVLGGLITETDKKDTEGIPVLSRIPGLGRLFREDVTSKERKELVIFIQPMVV 828


>gi|254422445|ref|ZP_05036163.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
 gi|196189934|gb|EDX84898.1| Bacterial type II and III secretion system protein [Synechococcus
           sp. PCC 7335]
          Length = 702

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/264 (19%), Positives = 97/264 (36%), Gaps = 20/264 (7%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              QV + + + +V  +     G Q S     +  ++S         V+ G         
Sbjct: 446 RRRQVAVNLRVIDVNLNDSDSFGSQFSFGLGDTAITQSGGIGLINFGVAGGALGI----- 500

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------ 305
               F   L A  +++  + + +PTL    GQ+A+     + +    +            
Sbjct: 501 -ARQFLAQLEASVQSSNAKIVTDPTLVIQEGQTAAVQLTQEVVTNITTDIETTEVGVLRT 559

Query: 306 -SVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY---RVRKADTTV 360
            +    D G+ L      +   G + L +   +S P    N G   +      +     +
Sbjct: 560 VTFEKEDAGLNLQVQIDRIDDNGFVTLAVAPSISAPTDTFNIGTEEAVLLANRQLTSGQI 619

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G T+VL+G++++  +     +P+L  IP+LGALFRNS       E+ +  TP +  
Sbjct: 620 RVRDGQTLVLSGIIQESDRNTVTKVPILGDIPLLGALFRNSDRENIRRELIVLLTPQV-- 677

Query: 421 PVAMRDLSRPDDHYSVEDDAKAFF 444
            +   D S     Y   +D +   
Sbjct: 678 -MNDSDQSVYGYGYVPSEDVQQLL 700


>gi|116747987|ref|YP_844674.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
 gi|116697051|gb|ABK16239.1| type IV pilus secretin PilQ [Syntrophobacter fumaroxidans MPOB]
          Length = 636

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 7/249 (2%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS--FAADFGGKFVSE 241
           ++N L+     QV ++  I  +  ++ + +G      G +   S +  F         + 
Sbjct: 387 LLNRLD-RPTSQVLIEARIITLTSEVKRSLGMNLGFGGDTPNHSATVPFTDFLINSPPAN 445

Query: 242 GGDFSVKGVLDRFSF--ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
               ++  ++       +  + ALE A  IR +A P +  ++   A  + G Q  Y  V 
Sbjct: 446 LFALNLAQMVGTTLLKVDLTISALETADEIRIMAAPRVLTMNNVKAVISQGVQIPYLKVG 505

Query: 300 SS-TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG-DMPSYRVRKAD 357
            + +  T     D  + L  TP +    ++ + I+ +  EP   V      P    RK  
Sbjct: 506 DTASNITGTDFKDAVLELAVTPHITPDHKVRMTIEAKQDEPSSTVTGAQGQPGIDTRKIS 565

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           T + +  G  IV+ G++++  +  K   P LS +PILG LF+++  + +  EI I   P 
Sbjct: 566 TELLVDDGNIIVIGGIIRNRDEAKKTATPGLSDVPILGRLFKSNEVDAQRNEILIFICPK 625

Query: 418 LVKPVAMRD 426
           +V      D
Sbjct: 626 IVDVTKPSD 634


>gi|149200052|ref|ZP_01877077.1| ComE [Lentisphaera araneosa HTCC2155]
 gi|149136810|gb|EDM25238.1| ComE [Lentisphaera araneosa HTCC2155]
          Length = 813

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 50/304 (16%), Positives = 103/304 (33%), Gaps = 54/304 (17%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-SSSGPSKSF 230
                     K++++ L      Q++++    +V  +  +++GF    TG  +   + + 
Sbjct: 493 TNTAANIQLIKRIIDELG-RPSAQISVETKFIDVDFNTTQELGFMWRWTGPRTPNHTLTG 551

Query: 231 AADFGGKFVSEGGD----------------------FSVKGVLDRFSFETVLHALERATA 268
              F                                 +   V      + ++ AL+++  
Sbjct: 552 DRIFAQSNDGATAAERFDNNIRGINEIVTSQEGPVQLAADLVFGNQELQMMVRALDQSDT 611

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----------TGATSVTTHDYGVVLHF 318
              L+ P     SG +       +                   T  T     D GV+L  
Sbjct: 612 SEVLSSPNAVTQSGNTVVLRVVEERFLPEEWEEAQLDADAIIPTTPTFGEARDIGVILEV 671

Query: 319 TP-TVLSPGRIGLRIQTEV-----------SEPVIGVNAGDMPSY--------RVRKADT 358
           TP        I + +  +            S+     ++   P++         +R+ +T
Sbjct: 672 TPEVSADNNTISMDLNPQQVELLGYDTELNSDLTNFTDSITYPNFFNYAMPIVSIRQVET 731

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             ++  G T+++ GL+K+ +  + + IP +S IP LG  F+N     E+T + I  T  L
Sbjct: 732 RAQIWDGETLLIGGLVKETVYSVDDSIPYVSDIPYLGRFFQNKGERSEKTNLLIFVTGRL 791

Query: 419 VKPV 422
           + PV
Sbjct: 792 ISPV 795


>gi|294665979|ref|ZP_06731242.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604227|gb|EFF47615.1| HrcC protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 607

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 85/241 (35%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
            +  TI E+R   ++ +G              G   G    F     G          GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|254442891|ref|ZP_05056367.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
 gi|198257199|gb|EDY81507.1| Bacterial type II and III secretion system protein
           [Verrucomicrobiae bacterium DG1235]
          Length = 842

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/374 (17%), Positives = 114/374 (30%), Gaps = 94/374 (25%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSE-----------TFLSQSGRNQYANSSSKKVMNLLN- 189
            D V   G+    Q  +  ++ +             +   S        + +++ N+LN 
Sbjct: 435 GDRVRDQGVATDAQTIRNFLQQAGVDFVATEGSTLAYDGSSMIVTQTRRNIERIRNILNR 494

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS-------------------------- 223
                QV ++    E++   L ++GF   I                              
Sbjct: 495 YTDVKQVEIEAKFLEIQEGSLDELGFDWVIDERGSPNDPQYETGEVYRSSMRTLAQAAAP 554

Query: 224 --------------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                                               +V G ++  +    + AL + +  
Sbjct: 555 SSVSSSILVDGEVIDNIDAPDLPGSNLLGAGAVPFTNVIGNINSVNLNVAIRALSQQSGS 614

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------------------GATS 306
             L+ P +T +SG  A      +  Y T  S T                           
Sbjct: 615 DLLSAPKVTVLSGNEAKINVSQEFRYPTRYSDTESDVGSTSGSLTGGSAGVTITPGTPED 674

Query: 307 VTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD------------------ 347
             T + GV L  TP V      I L +   V+E    V  G                   
Sbjct: 675 FVTRNVGVELAVTPIVEEDDYSITLDLNPRVTEFEGFVEYGGPSIAISGGRTVKTPSGFY 734

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P + VR+ +T V +  G T+V+ G+ ++D+  + + IP L  IP +G LFR+   +  +
Sbjct: 735 QPIFAVREVETKVTIWDGATVVMGGMTREDVVTVNDKIPFLGDIPFVGRLFRSEGESSAK 794

Query: 408 TEIFIAATPFLVKP 421
             + I  T  LV P
Sbjct: 795 RNLLIFVTANLVSP 808


>gi|307610026|emb|CBW99559.1| type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 791

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 315 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 371

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 372 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 431

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T             + K
Sbjct: 432 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 490

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 491 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 538

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 539 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 598

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
                ++++  T+    +  + L+  P +     I L+I      +       +    P+
Sbjct: 599 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 658

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 659 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 718

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 719 MVFIKPIILR 728


>gi|289804655|ref|ZP_06535284.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 465

 Score =  140 bits (352), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 156 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 206

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 207 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 235

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 236 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 295

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
            +       ++    YG ++   P   + G+I + +  E       +     +   +P  
Sbjct: 296 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 353

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 354 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 413

Query: 412 IAATPF-LVKPVAMRD 426
               P  +V P+    
Sbjct: 414 FMIEPKEIVDPLTPDA 429


>gi|213865044|ref|ZP_03387163.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
          Length = 501

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 111/316 (35%), Gaps = 53/316 (16%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
            +       ++    YG ++   P   + G+I + +  E       +     +   +P  
Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+      
Sbjct: 390 GRTLISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRV 449

Query: 412 IAATPF-LVKPVAMRD 426
               P  +V P+    
Sbjct: 450 FMIEPKEIVDPLTPDA 465


>gi|188574359|ref|YP_001911288.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188518811|gb|ACD56756.1| HrpA type III secretion outer membrane pore, YscC/HrcC family
           [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 591

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243
            +  TI E+R   ++ +G                   G          A   G     GG
Sbjct: 354 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 413

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 414 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 473

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 474 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 530

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + +    +     TP +V 
Sbjct: 531 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLLGNLFKHRQKSGSRMQRLFLLTPHVVS 590

Query: 421 P 421
           P
Sbjct: 591 P 591


>gi|262066840|ref|ZP_06026452.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
 gi|291379452|gb|EFE86970.1| general secretion pathway protein D [Fusobacterium periodonticum
           ATCC 33693]
          Length = 514

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 37/310 (11%)

Query: 126 TLRRFIADSNIRV--EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
           +L     D  ++V  E   + +     V ++    + V  +E  + ++  +   +     
Sbjct: 212 SLFNVSPDEVLKVLHETFGENI----KVSSLSKVNKLVVSAERDILENAISIIEDID--- 264

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVS 240
                      QV +   I ++  ++ +++GF         S    S +           
Sbjct: 265 -------KNPKQVKISSQILDISNNLFEELGFDWVYKQNVASEERNSLTAIILGKAGLNG 317

Query: 241 EGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---- 294
            G   ++    +  S    T L+ LE    +   + PTL   SG+   F    + +    
Sbjct: 318 IGSTLNIVRQFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVK 377

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV- 353
               + +   T     + G+++   P +     I L I  E+S+     N  ++      
Sbjct: 378 TTRENKNDRHTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSG 437

Query: 354 -----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                      R   T V +  G TI++ GL K   Q ++  IP+L  IPI+   F+N+ 
Sbjct: 438 TYNSEGGSKVGRALTTKVRVKDGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTT 497

Query: 403 FNREETEIFI 412
             RE ++++I
Sbjct: 498 KKRENSDMYI 507


>gi|167033463|ref|YP_001668694.1| type II and III secretion system protein [Pseudomonas putida GB-1]
 gi|166859951|gb|ABY98358.1| type II and III secretion system protein [Pseudomonas putida GB-1]
          Length = 621

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 65/437 (14%), Positives = 139/437 (31%), Gaps = 71/437 (16%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV------ 80
           P   E   A +      + +   I+   +K +   +      + V +    D V      
Sbjct: 187 PVTLEFRDANLKTIFEVLSQVAGINFIFDKDLRPDMK---ATIFVREVRIEDAVALLLEQ 243

Query: 81  ------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
                 + +  T+ ++  +  +          + ++    L   D       ++  +   
Sbjct: 244 NQLRQKIVNDNTVMVYPDSPQKTK-----DYQELVMRTFYLTSIDANTALNMVKTMLKTR 298

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
           ++ V+   +T+ +      ++ +++ ++  +    +          +   +         
Sbjct: 299 DVFVDERLNTLTMRDTPDAVRMAEKLLQSQDQSNPEVVLEVEVMEVATSRI--------- 349

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
                             +G Q   T           +        +    S+       
Sbjct: 350 ----------------LDLGLQWPNTFGVLSNDGKPVSVLDQLKGIDSSRISI-----SP 388

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSVT 308
           + +  ++A      I TLA P +   + + A    G +          +        SVT
Sbjct: 389 APQAKINA--SDKDINTLASPVIRVSNREQARIHIGQRVPIISATSVPSTQGPVITESVT 446

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVELPSG 365
             D G+ L   PTV     + +++  EVS                   R A T++ L  G
Sbjct: 447 YLDVGLKLEVQPTVHLNNEVAIKVALEVSNATPLEATRQGTIPVQVDTRNAQTSLRLHDG 506

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T VLAGL+++D       IP L  IP LG LF +++ +  ++E+ +A TP +V+ +   
Sbjct: 507 ETQVLAGLVRNDHNASGNKIPGLGDIPGLGRLFGSNKDDMSKSELVLAITPRIVRNLP-- 564

Query: 426 DLSRPDDHYSVEDDAKA 442
                   Y    D + 
Sbjct: 565 --------YQSPSDMEF 573


>gi|330963059|gb|EGH63319.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 649

 Score =  139 bits (351), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 88/242 (36%), Gaps = 16/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++ R+ L ++  + +    S G         GG  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWNFNAGSVG---------GGANLFD 356

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  S   + +   F   LHALE   +   +  P++  +  Q A               S
Sbjct: 357 AGTSSTLFLQNASKFSAELHALEGNGSASVIGNPSILTLENQPAVIDLSRTEYLTAT--S 414

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 415 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 474

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 475 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 534

Query: 418 LV 419
           L+
Sbjct: 535 LI 536


>gi|262195825|ref|YP_003267034.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
 gi|262079172|gb|ACY15141.1| general secretion pathway protein D [Haliangium ochraceum DSM
           14365]
          Length = 842

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/255 (21%), Positives = 96/255 (37%), Gaps = 27/255 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV-- 250
             QV ++  I EV+ D    +G        S   +            S            
Sbjct: 450 RRQVFIEAMILEVQTDSGLDLGASFHGGQLSDDGTLLLGGLQTSDLQSIVPGTLAASSGL 509

Query: 251 ----------------LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
                           +   SF  +  AL  ++ +  L+ P +   + + A  + G    
Sbjct: 510 LGGVLGPLLNTQELLGVSIPSFGVLFQALATSSNVNVLSSPHIVTTNNEEAEISVGQNIP 569

Query: 295 YKTVSS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
           Y++  S         S    SV   D  + L  TP + +   + L I  E+S+      A
Sbjct: 570 YQSGLSGLPTAGTGVSFPVQSVQRQDVALTLKITPHINASDMVTLEIDQEISDIASPDFA 629

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
           G  PS+  R   TTV +    +IV+ GL+ D +   +  +PLL  +P+LG  F+ +   +
Sbjct: 630 GLGPSWSKRTVKTTVVVRDQQSIVIGGLMSDRMTYNESKVPLLGDLPLLGYFFKFTERQK 689

Query: 406 EETEIFIAATPFLVK 420
            +T + I  TP+++K
Sbjct: 690 SKTNLLILLTPYVIK 704


>gi|260772068|ref|ZP_05880985.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
 gi|260612935|gb|EEX38137.1| type IV pilus biogenesis protein PilQ [Vibrio metschnikovii CIP
           69.14]
          Length = 573

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 70/421 (16%), Positives = 142/421 (33%), Gaps = 45/421 (10%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I    + ++ ++  ++  +      V  Q VL        V     R 
Sbjct: 163 FQDIPVRNVLQLIADYNQFNLVVSDSVVGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 218

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
                   G   ++    +        +   R    L       I  S  +   +++ + 
Sbjct: 219 ------VEGNVILVAPKAELDLREKQQLEKARLAEELGELQSAIIKISFAKASDIAEMIG 272

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G V  + +         T               +++++ L+I  + QV ++  I  V 
Sbjct: 273 GTGAVNMLSERGSISIDERTNALLIRELPENIHVIREIISALDIPVK-QVQIEARIVTVN 331

Query: 207 RDILKQIGFQHSITGSSSGPSKSFA--------------------------ADFGGKFVS 240
              L ++G +  ++ +    +   +                                  +
Sbjct: 332 EGNLDELGIRWGVSSTRGNNTVGGSIEGNLTGIGLYQPEDGSEMINNFLNVNLGATAANA 391

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
               F V  +      +  L A++R +    ++ P L   + + A    G +  Y    S
Sbjct: 392 SSIAFQVAKLGSGTLLDLELSAMQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLES-S 450

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADT 358
           S+GAT+V      + L  TP +    R+ L +      P   +    G+  +   ++  T
Sbjct: 451 SSGATTVAFKKAVLSLQVTPQITPDNRLVLDLSVTQDRPGDIVKTGTGEAVAIHTQRIGT 510

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S     ++E+ I  TP +
Sbjct: 511 QVLVNNGETVVLGGIFQHSITNTVDKVPLLGDLPLLGALFRRSYQQMGKSELLIFVTPKV 570

Query: 419 V 419
           V
Sbjct: 571 V 571


>gi|62184688|ref|YP_219473.1| putative general secretion protein [Chlamydophila abortus S26/3]
 gi|62147755|emb|CAH63499.1| putative general secretion protein [Chlamydophila abortus S26/3]
          Length = 908

 Score =  139 bits (351), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 554 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 613

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       ++                                     F +  + +
Sbjct: 614 KVAYASGLLSNTGLANPAKSTVPPAKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 673

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 674 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 733

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    T+     + L+I+  +SE          P      A T 
Sbjct: 734 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP+L  LF  +   R++  I +   P ++
Sbjct: 793 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLLRGLFSRTIDQRQKRNIMMFIKPKVI 852

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 853 SSFEEGTKLTNKEGYR 868


>gi|15835475|ref|NP_297234.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270285655|ref|ZP_06195049.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
 gi|270289664|ref|ZP_06195966.1| general secretion pathway protein D [Chlamydia muridarum Weiss]
 gi|301337051|ref|ZP_07225253.1| general secretion pathway protein D [Chlamydia muridarum MopnTet14]
 gi|7190887|gb|AAF39657.1| general secretion pathway protein D [Chlamydia muridarum Nigg]
          Length = 759

 Score =  139 bits (350), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 51/269 (18%), Positives = 101/269 (37%), Gaps = 6/269 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       + A  +    +     F       
Sbjct: 467 KKMVRIEVLLFERKLSSQRKSGLNLLRLGEEVCKQGTQAVSWANGGI-LEFLFKGGAKGI 525

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             S++     L     +R  A P++  ++   A      +     VSS           Y
Sbjct: 526 VPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSSEKDKAQYNRAQY 584

Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           G+++   P +      G+  + ++T+++    G N  D P    R     V +  G T++
Sbjct: 585 GIMIKILPVINIGEEDGKSFITLETDITFDSTGKNQADRPDVTRRNITNKVRIQDGETVI 644

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
           + GL  +     ++GIP L ++P +G LF     +  +TE+F+  TP ++  PV   +  
Sbjct: 645 IGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDATSDSQTEMFMFITPKILDNPVEEEEKL 704

Query: 429 RPDDHYSVEDDAKAFFFNRVNKIYGPKEA 457
                 S   + + F    V+     K+A
Sbjct: 705 ECAFLASRPGENEDFLRAVVSGQQAAKQA 733


>gi|148263986|ref|YP_001230692.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
 gi|146397486|gb|ABQ26119.1| type II and III secretion system protein [Geobacter uraniireducens
           Rf4]
          Length = 796

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/386 (18%), Positives = 143/386 (37%), Gaps = 32/386 (8%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ ++ KN  +          +  +    L + +       +R  +    I V 
Sbjct: 244 KVLNENTIIIYTKNPEKTK-----QYEELFVQTFYLNKLEAKKAVNLIRTMLQVRKIYVN 298

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
              + +V+      I+ +Q+ +E ++   ++          SK       +A        
Sbjct: 299 EEMNALVIRDTPDVIEVAQKILEANDLPDAEVVLEVEVIEISKNNAESFGLALSRYAVST 358

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
              AE     L  +     ++ + +  + +  ++    F   G +  +      F+F   
Sbjct: 359 AAAAEGSSTFLSDV-LVPPVSTTPTNTTNTPTSNLLNYFRWRGFNGFLTVPNATFNFGKT 417

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVTTHDYGVVL 316
           L          TLA P +   + + A F  G +    T SS TG   + +V   D GV L
Sbjct: 418 LS------NSETLANPKIRVKNREKAKFNVGQRVPITTTSSPTGGGVSVNVQYVDVGVKL 471

Query: 317 HFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           +  PT+     + +++  EVS            +   + +   R  DT + L  G T ++
Sbjct: 472 NAEPTIQLNNEVSIKLSLEVSSILSKEKVGSTDSLTTVVTIGTRNLDTVLSLKDGETSII 531

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            GL++D   + K+ I LL  IP++G L   +     ++E+ +A TP +V+ +        
Sbjct: 532 GGLMQDLKSKNKQKIVLLGDIPLIGPLLSQNDDTNNKSELVLAITPRIVRSI-------- 583

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKE 456
                 E D  AF+  + ++    K 
Sbjct: 584 ---TIPEGDVAAFWSGKEDEPSTSKP 606


>gi|37520489|ref|NP_923866.1| hypothetical protein gll0920 [Gloeobacter violaceus PCC 7421]
 gi|35211483|dbj|BAC88861.1| gll0920 [Gloeobacter violaceus PCC 7421]
          Length = 632

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 54/249 (21%), Positives = 99/249 (39%), Gaps = 15/249 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV  +V I E+     +++    +I   S+    + A    G   S    F+    + R
Sbjct: 382 RQVVFEVKIVELSDAGSRELNALRTIQSGSAVSPGNTAPLSLGGLFSPPTSFATFNDIAR 441

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------GATSV 307
                V++ L      R + +  L  I+GQ AS              +         T++
Sbjct: 442 AI--VVINGLITENKARVVTDTKLNTITGQKASIDVQTDINLILNQLTNVSGATVNNTTL 499

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVEL 362
           +T   G V+  TPTV + G +   +  E S P              P+   RK    + +
Sbjct: 500 STLRAGTVVELTPTVQADGNVLAELSVESSVPQGTTTLTSSGTTVPPNIARRKVKNIILV 559

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL--VK 420
             G T+ + GL++   +++   +P    IP++G LF N+  + E++E+ +  TP +  V+
Sbjct: 560 KDGQTLEIGGLIQTTNREVITRVPFFGYIPLIGQLFSNTNVSLEQSELVVFITPRVRDVQ 619

Query: 421 PVAMRDLSR 429
           P+    L  
Sbjct: 620 PLPDTKLPL 628


>gi|94496757|ref|ZP_01303332.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
 gi|94423770|gb|EAT08796.1| putative type III secretion protein YscC [Sphingomonas sp. SKA58]
          Length = 599

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 66/413 (15%), Positives = 132/413 (31%), Gaps = 33/413 (7%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
             +  I    A  +    ++  + +   +   +     +    ++V V  P  A +V   
Sbjct: 168 PPVAAIAPGRAQPLTPGGIDPYELRVFYLRYARADDTTLHTGDREVRV--PGVATIVARV 225

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
                  G   G           +   ++  L+ + +  +     R     N       D
Sbjct: 226 MGDRLPIGTVGGS------YGAQQVRQSVPRLMGKGLDSVAPDASRSTPYDN----DEED 275

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-------YANSSSKKVMNLLNIAGEDQV 196
            + L G    +  +Q   +           N            + + ++  L++A    V
Sbjct: 276 YLGLPGQEPIVVQAQPVPQAGPRITVDPSLNAVIVRDRPENMPAYEGLVRSLDVA-PQIV 334

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGP---------SKSFAADFGGKFVSEGGDFSV 247
            L+ TI ++  D L+++G          G          + +   D         G    
Sbjct: 335 ELEATIIDINVDRLRELGINWRFRSGDWGALFGGDIVRRTGNPLTDSLNTGSVNRGLSLS 394

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +     F   + ALE   A + ++ P L  +S   A F        +          +
Sbjct: 395 GIIGANNEFIARISALEEKGAAKVVSRPQLVTLSNVEAVFDRTRTFYVRVA--GDRQVDL 452

Query: 308 TTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPVI-GVNAGDMPSYRVRKADTTVELPSG 365
                G VL   P VL   G+  +R+   V +  +       +P       +T   +  G
Sbjct: 453 FNVTAGTVLRVNPHVLVDNGQPRIRMVVNVEDGALLDGTVDRIPVVERASVNTQALIAEG 512

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +++L GL  +     +  IP+L +IP+LG LF++    R+  E     +P +
Sbjct: 513 ESLLLGGLTVNSDMDAETAIPVLGQIPVLGELFKSRSKRRQHVERLFLISPRI 565


>gi|166714017|ref|ZP_02245224.1| HrcC [Xanthomonas oryzae pv. oryzicola BLS256]
 gi|61219456|gb|AAX40633.1| HrcC [Xanthomonas oryzae pv. oryzicola]
          Length = 607

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 83/241 (34%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT-------------GSSSGPSKSFAADFGGKFVSEGG 243
            +  TI E+R   ++ +G                   G          A   G     GG
Sbjct: 370 QIDATIIEIRDGAMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGVLSGAATDGATTPVGG 429

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 430 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 489

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+      ++ L ++ E  +         +P     +  T  
Sbjct: 490 D--LYNLSAGVSLRVLPSVVPGSPNSQMRLDVRIEDGQL-GSNTVDGIPVITSSEIKTQA 546

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP+LG LF++ + N    +     TP +V 
Sbjct: 547 FVNEGQSLLIAGYAYDADETNLNAVPGLSKIPLLGNLFKHRQKNGSRMQRLFLLTPHVVS 606

Query: 421 P 421
           P
Sbjct: 607 P 607


>gi|295111311|emb|CBL28061.1| Type II secretory pathway, component PulD [Synergistetes bacterium
           SGP1]
          Length = 193

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 44/178 (24%), Positives = 72/178 (40%), Gaps = 3/178 (1%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F+    ALE     + LA P++  I G  A       + Y +     G  + +T   G  
Sbjct: 8   FDGAFRALEERGKGKALASPSVITIDGMEARVELTQDYPYISERDDAGNPTWSTQTVGPQ 67

Query: 316 LHFTPTVLSPGRIGL---RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +  TP V   G I L       EV + + G     MP    R   T V +  G   V+ G
Sbjct: 68  MTMTPRVGRDGVINLALDLETGEVIQMITGSTGEQMPRTSKRHVTTNVRVRDGEPFVIGG 127

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           L  D+  + +  IP+L ++P+LG LF   +    +T++ +   P+++          P
Sbjct: 128 LFSDNKSRTRNRIPILGQLPLLGELFTYRQDEHRKTQVVMLVVPYVLDTPDAAIEQEP 185


>gi|86607978|ref|YP_476740.1| type IV pilus secretin PilQ [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86556520|gb|ABD01477.1| type IV pilus secretin PilQ, putative [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 696

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/421 (15%), Positives = 147/421 (34%), Gaps = 71/421 (16%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A +N+   ++     IS+ +    + +    +  +      +        +T+++     
Sbjct: 301 AGLNVVLNDVPPDLTISLDVQDSPLQETFNFILRL-----KQLQAQ-RRGQTVFVGQNLP 354

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           G   +++  +   Q +  D+      + LE  L      +   V+  ++++ + G   + 
Sbjct: 355 GVTGILVRNYRVNQAVATDL-----ASRLEEVLNAVAPGAQFVVDERTNSITVIG--NSR 407

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           Q    A ++++                      L++    QV + +   ++R D  + + 
Sbjct: 408 QQDIAAAQIAQ----------------------LDVR-RRQVLISLRAVDIRLDKNESLS 444

Query: 215 FQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFS-----FE 257
                   +        A+FGG                 G   S+ G+ +  +       
Sbjct: 445 VNLGGASGNFALGTLGDANFGGRPLNQPAGSSVSSIGPAGPSGSITGIFNTLNRLQQSLA 504

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA---------TSVT 308
             + +  +    + L +P +    G S+  +          + +              + 
Sbjct: 505 LRVQSAIQNGTGKILTDPKVVVADGGSSRISIATSVPVNVETITIPQGENQPPVVTQRLQ 564

Query: 309 THDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKAD-TT 359
             D GV+L  +   +   G + L IQ E+S PV              + +   R+   + 
Sbjct: 565 REDAGVILDVSEVRIDDNGFVTLTIQPEISIPVPSQILGGGDFAGILLFNIDRRQLQASQ 624

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T ++AGL++D      + +P L  +P+LGALFR+   N E  E+    TP+++
Sbjct: 625 LRLRDGQTFIIAGLIQDRDIVDVQKVPFLGDLPLLGALFRSQSVNNERNEVVFMLTPYIM 684

Query: 420 K 420
            
Sbjct: 685 D 685


>gi|289663772|ref|ZP_06485353.1| HrcC protein [Xanthomonas campestris pv. vasculorum NCPPB702]
 gi|289668194|ref|ZP_06489269.1| HrcC protein [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 593

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 86/241 (35%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GG 243
            +  TI EVR   ++ +G              G   G    F     G          GG
Sbjct: 356 QIDATIIEVRDGAMQDLGVDWRFHSQHTDVQTGDGRGGQLGFDGALSGAATQGTMTPVGG 415

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE     + ++ P +  +    A      Q   +    ++ 
Sbjct: 416 TLTAVLGDAGRYLMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASA 475

Query: 304 ATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+   S G++ L ++ E  +         +P     +  T  
Sbjct: 476 D--LYNLSAGVSLRVLPSVVPGSSNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQA 532

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  +     +P LSKIP++G LF++ + +    +     TP +V 
Sbjct: 533 FVNEGQSLLIAGYAYDADETDLNAVPGLSKIPLVGNLFKHRQKSGSRMQRLFLLTPHVVS 592

Query: 421 P 421
           P
Sbjct: 593 P 593


>gi|192384691|dbj|BAG49616.1| HrcC [Pseudomonas viridiflava]
          Length = 671

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G       ++R V            +     + ++++  L+    + V +   I ++ R
Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L  +  + S    S     S             G  S   + D   F   + ALE   
Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P++  +  Q A           T        +V     G  L   P  ++  +
Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419

Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               ++  ++ +  +      D P  +     T   +    ++V+ G   D+  + ++ +
Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  +P++GALF + R      E     TP LV
Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513


>gi|297623561|ref|YP_003704995.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
 gi|297164741|gb|ADI14452.1| type II and III secretion system protein [Truepera radiovictrix DSM
           17093]
          Length = 560

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/229 (22%), Positives = 95/229 (41%), Gaps = 7/229 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             E Q+ ++V I EV  +  +++G   +           F+             F  +  
Sbjct: 338 RPERQINVQVRIQEVSANASERLGLNLTAAMDR------FSTTLFSGEGGLSFVFDAQRA 391

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
           +  F+   +L   E     R + +  +T ++   A+  +GG         + G T     
Sbjct: 392 IAGFNLGAILDVYEEQGLSRRVDDSNVTVLNNGVATLQAGGTQYNYVRDEAGGVTRDE-I 450

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            YGV++ FTP V +   + L +   V  P +    G +  +  RKA++ + L  G T+VL
Sbjct: 451 PYGVIVGFTPQVANNNSVILDLCARVDTPSLRDAEGRITEFLTRKANSRITLQPGQTVVL 510

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            GLL++ +      +P L  IP++G LF  +      TE+ I  T  ++
Sbjct: 511 GGLLQNQVVASNRSVPGLGDIPVVGNLFSTNTATELNTELLIIVTANVL 559


>gi|85060069|ref|YP_455771.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|45504769|gb|AAS66859.1| InvG [Sodalis glossinidius]
 gi|84780589|dbj|BAE75366.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 546

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 64/438 (14%), Positives = 140/438 (31%), Gaps = 53/438 (12%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL- 70
             + L +  P+  +   +++A              G+ + +     + +++  +   +L 
Sbjct: 113 AVVALRTILPAALR-HFLQQAQLHDPRYPLRGDPGGRLLYLS-GPPMYVELVENAARLLD 170

Query: 71  -----VSDPTKADVVVHS-----PRTMYLFGKN---VGQANVILIGHDGKQMLNLDILIE 117
                + D  +A+V+  S      R   L G+     G A VI      + M        
Sbjct: 171 KEPDGIHDREQAEVIPLSYTFVGDRYYALRGEKVTIPGIATVI-----ERLMRREGRSAV 225

Query: 118 RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            D+          +  + +R E                       ++    +        
Sbjct: 226 ADVPAPLTPAEALLPVAEVRAE----------QDVEPLPLWPVQVIANPSNNSLLVKGTG 275

Query: 178 NSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                 + ++  L+I     V L + I ++ +  L Q G              +     G
Sbjct: 276 RQVQFVRNLVRSLDIPKRH-VELSLWIIDLEKSDLDQFGINWQ--------GGARIGQRG 326

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G  +++G        LD   F   + AL R      ++ P +       A F +      
Sbjct: 327 GVTLNQGS----YSALDGTRFVASILALARKHRANIVSRPIILTQENVPAIFDNNRTFYT 382

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE----VSEPVIGVNAGDMPSY 351
           + +     +  +    YG ++   P      +I + +  E    VS       + D+P  
Sbjct: 383 RLL--GERSVELREVTYGTMISVLPRFSGDDQIEMVLTIEDGGEVSRRQSNPGSDDLPEV 440

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                 T   +P G ++++ G  +D+++  +  +P L  IP++G LFR+    +      
Sbjct: 441 GRTHISTVARVPRGKSLLIGGYTRDELRGNRARLPGLGSIPLIGGLFRHRIDKQANMVRV 500

Query: 412 IAATPF-LVKPVAMRDLS 428
               P  + +P+     +
Sbjct: 501 FLIQPREISEPLQQDAAA 518


>gi|12331294|emb|CAC24709.1| putative HrcS protein [Pseudomonas fluorescens]
          Length = 674

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/269 (17%), Positives = 90/269 (33%), Gaps = 16/269 (5%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
           + S R                   +  +K++  L++   + + +   I ++ R+ L ++ 
Sbjct: 258 RASIRVSADVRNNAVLIYDLPERKALYEKLVKQLDVP-RNLIEIDAVILDIDRNELAELA 316

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
            + +    +           GG  + + G  S   + +   F   L ALE   +   +  
Sbjct: 317 SRWNFNSGNFS---------GGANLFDAGASSTLFLQNAGKFSAQLRALEGNGSASVIGN 367

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLR 331
           P++  +  Q A               S  A ++     G  L   P  L      +I + 
Sbjct: 368 PSILTLENQPAVIDLSRTEYLTAT--SERAANILPITAGTSLQVIPRSLDHDGKPQIQMI 425

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           +  E  +  +       PS R     T   +   G++V+ G    +       IPLL  I
Sbjct: 426 VDIEDGQIDVSTINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDI 485

Query: 392 PILGA-LFRNSRFNREETEIFIAATPFLV 419
           P +G  LF++      +       TP L+
Sbjct: 486 PYIGKLLFQSHNRELSQRGRLFILTPRLI 514


>gi|51103213|gb|AAT96354.1| hrcC [Pseudomonas viridiflava]
          Length = 671

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/274 (16%), Positives = 92/274 (33%), Gaps = 15/274 (5%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G       ++R V            +     + ++++  L+    + V +   I ++ R
Sbjct: 253 RGGESKSNSNRRVVADVRNNAVLIYDDPEKRDTYQQLVQQLD-QPSNLVEIDAVILDIDR 311

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L  +  + S    S     S             G  S   + D   F   + ALE   
Sbjct: 312 SQLSSLESRWSARAGSVNFGSSLL----------TGGSSTLFINDFDRFFADIQALEGQG 361

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
               +A P++  +  Q A           T        +V     G  L   P  ++  +
Sbjct: 362 VASVIARPSVLTLENQPAVIDFSRTAYITTT--GERVANVQPVTAGTSLRVIPRTIAGEQ 419

Query: 328 IG-LRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               ++  ++ +  +      D P  +     T   +    ++V+ G   D+  + ++ +
Sbjct: 420 PNRFQLIVDIEDGQLERTRDNDTPDVKRGTVSTQAVIGENRSLVIGGFHVDESGERQDKV 479

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P+L  +P++GALF + R      E     TP LV
Sbjct: 480 PILGSLPVIGALFTSKRHEVSRRERLFILTPRLV 513


>gi|254229573|ref|ZP_04922986.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
 gi|151937946|gb|EDN56791.1| Type II secretory pathway, component PulD [Vibrio sp. Ex25]
          Length = 458

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S         A F  +  +          
Sbjct: 236 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 287

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T             
Sbjct: 288 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 347

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    +      + S+ V   +         R   T V++    
Sbjct: 348 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 405

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 406 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 458


>gi|238757842|ref|ZP_04619024.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
 gi|238703827|gb|EEP96362.1| Possible type III secretion protein EscC/SpiA, outer membrane pore
           [Yersinia aldovae ATCC 35236]
          Length = 484

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/283 (19%), Positives = 101/283 (35%), Gaps = 21/283 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--------GEDQVTLK 199
            G   T   S  A +    F +   +N  A     + +N+                + + 
Sbjct: 202 RGSAPTTNTSSPATQGLPMFSADPRQN--AVIVRDRSVNMAGYRKLISELDQRPQMIEIS 259

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           VTI +V    + Q+G   S   S  G + SF         S  G      + +  SF   
Sbjct: 260 VTIIDVDAGDISQLGIDWSAAVSMGGGTLSF-----NGPDSNTGGGFSTVISNTPSFMAR 314

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE+ +    L++P++  ++   A          K          + +   G +L  T
Sbjct: 315 LVALEKNSHAYILSQPSVVTLNNIQAVLDKNITFYTKL--EGDKVAKLESITTGSLLRVT 372

Query: 320 PTVLSP-GRIGLRIQTEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           P +L   G+  + +   + +         +  +P  +  +  +   L +G +++L G  +
Sbjct: 373 PRLLEDKGKQNIMLSLNIQDGQQNAPISQSEPLPQVQNSEIASQATLQAGQSLLLGGFKQ 432

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           D   Q++  IPLL  IPI+G LFR+                 +
Sbjct: 433 DKQVQVQNKIPLLGDIPIIGHLFRSDINQTNSVIRLFLIKATV 475


>gi|325927686|ref|ZP_08188914.1| HrcC protein [Xanthomonas perforans 91-118]
 gi|325541887|gb|EGD13401.1| HrcC protein [Xanthomonas perforans 91-118]
          Length = 607

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D+        T             S   ++  L+      + +  TI E+R  
Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381

Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255
            ++ +G              G   G    F     G          GG  +         
Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T + ALE     + ++ P +  +    A      Q   +    ++    +     GV 
Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P+V+     G++ L ++ E  +         +P     +  T   +  G ++++AG
Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D  +     IP LSKIP++G LF++ + +    +     TP +V P
Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607


>gi|78045991|ref|YP_362166.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|462304|sp|P80151|HRPA1_XANEU RecName: Full=Hypersensitivity response secretion protein hrpA1;
           Flags: Precursor
 gi|398109|gb|AAA27603.1| hrpA1 [Xanthomonas campestris]
 gi|984886|gb|AAB08464.1| HrpA1 [Xanthomonas euvesicatoria]
 gi|78034421|emb|CAJ22066.1| HrcC protein [Xanthomonas campestris pv. vesicatoria str. 85-10]
          Length = 607

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 20/289 (6%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D+        T             S   ++  L+      + +  TI E+R  
Sbjct: 323 GGAELASDAPVIEADPRTNAILIRDRPERMQSYGTLIQQLDNR-PKLLQIDATIIEIRDG 381

Query: 209 ILKQIGFQHSIT--------GSSSGPSKSFAADFGGKFVSE-----GGDFSVKGVLDRFS 255
            ++ +G              G   G    F     G          GG  +         
Sbjct: 382 AMQDLGVDWRFHSQHTDIQTGDGRGGQLGFNGALSGAATDGATTPVGGTLTAVLGDAGRY 441

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
             T + ALE     + ++ P +  +    A      Q   +    ++    +     GV 
Sbjct: 442 LMTRVSALETTNKAKIVSSPQVATLDNVEAVMDHKQQAFVRVSGYASAD--LYNLSAGVS 499

Query: 316 LHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P+V+     G++ L ++ E  +         +P     +  T   +  G ++++AG
Sbjct: 500 LRVLPSVVPGSPNGQMRLDVRIEDGQL-GSNTVDGIPVITSSEITTQAFVNEGQSLLIAG 558

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
              D  +     IP LSKIP++G LF++ + +    +     TP +V P
Sbjct: 559 YAYDADETDLNAIPGLSKIPLVGNLFKHRQKSGTRMQRLFLLTPHVVSP 607


>gi|238796118|ref|ZP_04639629.1| Possible type III secretion system protein [Yersinia mollaretii
           ATCC 43969]
 gi|238720063|gb|EEQ11868.1| Possible type III secretion system protein [Yersinia mollaretii
           ATCC 43969]
          Length = 556

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/262 (14%), Positives = 86/262 (32%), Gaps = 22/262 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I +V R  +  +G +        G                   F+   + D
Sbjct: 301 RSQVELSLWIIDVVRSKVDDLGVRWEAGSIGVGGG--------------TVTFNRSTLTD 346

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + A+ ++   R ++ P +       A F +      +         ++    Y
Sbjct: 347 SSMFLAQIDAISKSGNARIVSRPVILTQENVPAMFDNNTSFYTRV--EGERVATLEQVTY 404

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
           G ++   P + +   + + +  E        +        +P       +T   +    +
Sbjct: 405 GTMISVLPRLSAGNSVEMEVNIEDGGLSRDKSGKVADVEGLPQVNRTNINTVARVGRNNS 464

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G  +D ++  +  IPLL  IP++G LF+    N+++        P L+      D 
Sbjct: 465 LLIGGYTRDQVEDSESQIPLLGDIPLVGNLFKYRAHNQQKMIRIFLIQPRLLDENEAWDG 524

Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449
            +  D+        +     V 
Sbjct: 525 RQFSDN-ERLTQHDSQLHGTVE 545


>gi|296123921|ref|YP_003631699.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
 gi|296016261|gb|ADG69500.1| type II and III secretion system protein [Planctomyces limnophilus
            DSM 3776]
          Length = 1469

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 60/393 (15%), Positives = 124/393 (31%), Gaps = 78/393 (19%)

Query: 107  KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            ++  N+   ++   A    T      +S +++   +  ++      T++  +R V +   
Sbjct: 928  RERKNVVFKLKNSPALAVSTAVTQFVNSQLQLSQQNPNLI-----STVEQLEREVVVVPE 982

Query: 167  FLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEVRRDILKQI----------- 213
              + S           ++  L+        QV ++  I EV  D + +            
Sbjct: 983  TGTNSLLISATPRYYDEITRLVMELDQAPRQVIIQALIVEVTLDNVDEFGVELGLQDSVL 1042

Query: 214  ------------------------------------GFQHSITGSSSGPSKSFAADFGGK 237
                                                GF  +   +  G + +      G 
Sbjct: 1043 FDRSVVDDLVTLTETTTSPNGTQTTTQRVVSQTAAPGFLFNNPNTPLGNNTTINPSSVGS 1102

Query: 238  ----------FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
                        ++ G   +       S   ++ AL     ++ L+ P +  +  Q A  
Sbjct: 1103 QGLSSFSLGRVNNDLGYGGLVLSAGSESVNVLIRALASRRRLQVLSRPQIRTLDNQQAQI 1162

Query: 288  TSGGQHLYKTVSS----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE----- 338
              G Q                  +     G++L  TP +   G I + +  E S+     
Sbjct: 1163 QVGQQVPIVDGVQIGATGLANPQIRQDQAGIILTVTPRISPDGTIVMELIAEKSQFRGNG 1222

Query: 339  -----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
                      N  + P   +  A T + +P+G T+V+ G++    +  +  +P +  IPI
Sbjct: 1223 VPIFTDATNGNVIESPIKDISAARTAISVPNGQTVVMGGMITATDETSERKVPFIGDIPI 1282

Query: 394  LGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            +G LFR    +   TE+ I  TP ++   A  +
Sbjct: 1283 VGHLFRYDSKSHVRTELLIFLTPRVISSDADSE 1315


>gi|170289478|ref|YP_001739716.1| type II and III secretion system protein [Thermotoga sp. RQ2]
 gi|170176981|gb|ACB10033.1| type II and III secretion system protein [Thermotoga sp. RQ2]
          Length = 387

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 49/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K +  ++I    QV + V + EV +D   ++G         SG   +         V+ 
Sbjct: 154 EKDLEKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             +               L  LE     +  A+P +   SG+ AS    G+     + + 
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              + + + D GV +   P V+    + L +  +VS            + +  +  TT+ 
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L +G T+V++G   +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383


>gi|76817445|ref|YP_335577.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581918|gb|ABA51392.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 630

 Score =  139 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 369 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 427

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 428 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 487

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 488 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 545

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 546 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 605

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 606 RYHSDSQNHMERVFLLSPRIIDP 628


>gi|269968410|ref|ZP_06182426.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
 gi|269826958|gb|EEZ81276.1| conserved hypothetical protein [Vibrio alginolyticus 40B]
          Length = 450

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S         A F  +  +          
Sbjct: 228 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 279

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T             
Sbjct: 280 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 339

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    +      + S+ V   +         R   T V++    
Sbjct: 340 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 397

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 398 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 450


>gi|206889986|ref|YP_002248061.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741924|gb|ACI20981.1| type II protein secretion protein-like protein [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 538

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/257 (20%), Positives = 98/257 (38%), Gaps = 30/257 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKFVSEGGD 244
             QV ++  + EV      + G   S            S G + S   +  G        
Sbjct: 280 SRQVLIEAKVIEVALSKSLKYGIDWSFLREWTHGTHTWSIGGATSGFTNVIGSGDPYSKI 339

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                      F +++ AL     +RTL+ P ++ ++GQ++ FT G  + + + + S   
Sbjct: 340 QFSLTTTAIKEFSSLIKALGEFGDVRTLSNPRVSIMNGQTSLFTVGRNYSFISKAQSNVT 399

Query: 305 T------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIG 342
           T              +    G+++   P +   G I L I   VS               
Sbjct: 400 TSGTGSPIITYTVETSNLLSGLIIGIVPYIDEKGEISLTITPIVSNLIEMRSATFGSSGA 459

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                +P   +R+  TTV++  G  I++ G++K +    +  +PLL  IP++G LF++  
Sbjct: 460 ETTIQLPRVDLRELSTTVKVKDGEIIIIGGMIKKEESFSENKMPLLGDIPVVGELFKSKD 519

Query: 403 FNREETEIFIAATPFLV 419
                TE+ I   P ++
Sbjct: 520 KEETNTELVILLQPRII 536


>gi|31742526|gb|AAK35045.2|AF330136_1 type II protein secretion LspD [Legionella pneumophila 130b]
          Length = 730

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/430 (15%), Positives = 142/430 (33%), Gaps = 41/430 (9%)

Query: 16  LFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
           L  + P +     I  A     N   V   K  +I + +   +IL++  D    + S+  
Sbjct: 254 LVKTQPGIGSRTQITIAADDRSNSILVSGSKTDRIRLRM---LILKLDKDSSTGVNSNTQ 310

Query: 76  KADVVVHSPRTMYLF-------------GKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
              +       +                G  +G      +          +   +   + 
Sbjct: 311 VVYLNYLRAEDLVPILAGIAQANFSGNVGTTIGTITRPALDSTNPASSLANTSADGQSSS 370

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L  T        N      + T        + + + + +    T             + K
Sbjct: 371 LSSTSTSSAPM-NASGATANTTSASTQNEGSTKPTVQIIGEPNTNSIILNAPASIIRTLK 429

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            V++ L+I    Q+ ++  +AEV    +  +G +                  G       
Sbjct: 430 TVISQLDIK-PAQLLIEALVAEVDEKDVNNLGIEW-----------GSNQQTGNPKDFRP 477

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ---------H 293
           G   +        F+  ++AL R      L+ P++  +  + A    G Q         +
Sbjct: 478 GFAIINSKTRIDDFQAQIYALAREQRANILSTPSVVVLDNRQAKILIGKQVSIATTSYPN 537

Query: 294 LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPS 350
                ++++  T+    +  + L+  P +     I L+I      +       +    P+
Sbjct: 538 NAGGTTTASPFTTFDRVNVALHLYVRPQITRGQGIQLQIDQGNDTLDPATATTDNTTTPT 597

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           + +    T+V + SG  +VL GL++D I      +P+L  IP +G LF+ +  NR++  +
Sbjct: 598 FNISSIVTSVHVESGDVVVLGGLIQDSIGNDNNKLPILGDIPGIGRLFQRNIRNRDKRVL 657

Query: 411 FIAATPFLVK 420
            +   P +++
Sbjct: 658 MVFIKPIILR 667


>gi|82795284|gb|ABB91653.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. tagetis]
          Length = 699

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/265 (17%), Positives = 89/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L++   + + +   I ++ R+ L ++  + +
Sbjct: 284 RVSADVRNNAVLIYDLPERKAMYEKLVKELDVP-RNLIEIDAVILDIDRNELAELSSRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
               +           GG  + + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 343 FNAGNVS---------GGASLFDAGTSSTMFIQNASKFSAELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S  A  +     G  L   P  L      ++ + +  E
Sbjct: 394 TLENQPAVIDLSRTEYLTAT--SERAAEILPITAGTSLQVIPRSLDHDGKPQVQMIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  +       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDVSTINDTQPSVRRGNVSTQAVIAEHGSLVVGGFHGLEANDRIHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELSQRERLFILTPRLI 536


>gi|227357599|ref|ZP_03841952.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
 gi|227162309|gb|EEI47313.1| type III secretion system protein [Proteus mirabilis ATCC 29906]
          Length = 571

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 83/254 (32%), Gaps = 22/254 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV + + I ++ +     +G     +  S   +  F                      
Sbjct: 318 KRQVEMSLWIIDISKSKADSLGVNWQGSYGSGKNTFFFNTASLSAV-------------S 364

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            FSF + + AL      + ++ P L       A F +      +         S+ +  +
Sbjct: 365 GFSFLSKIKALSEEGEAKMVSRPILLTQENTPAIFDNNTTFYTQI--KGERVASLESTTF 422

Query: 313 GVVLHFTPTVLSPGR-----IGLRIQTEV--SEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           G ++   P + +  +     I L    E    +         +P        T   +  G
Sbjct: 423 GTMISVLPRISNTNQEIEMIINLEDGAEKKSDDEDREEGIEKLPVINRTNISTVARVSEG 482

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           G++++ G  ++D  + +  IP LS IP++G  F     N ++        P L+      
Sbjct: 483 GSLLIGGYTREDNIKAENRIPFLSAIPLVGRAFSYQSDNNKKMVRIFMLQPRLLDKTDTH 542

Query: 426 DLSRPDDHYSVEDD 439
            L    +H  +  D
Sbjct: 543 GLDSLTEHPFLPMD 556


>gi|281413054|ref|YP_003347133.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
 gi|281374157|gb|ADA67719.1| type II and III secretion system protein [Thermotoga naphthophila
           RKU-10]
          Length = 387

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  ++I    QV + V + EV +D   ++G         SG   +         V+ 
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             +               L  LE     +  A+P +   SG+ AS    G+     + + 
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              + + + D GV +   P V+    + L +  +VS            + +  +  TT+ 
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L +G T+V++G   +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 327 LKNGQTVVISGATIEDNAQTNSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|237803001|ref|YP_002888195.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
 gi|231274235|emb|CAX11029.1| general secretion pathway protein D [Chlamydia trachomatis
           B/Jali20/OT]
          Length = 760

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|29839808|ref|NP_828914.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
 gi|29834155|gb|AAP04792.1| type III secretion protein SctC [Chlamydophila caviae GPIC]
          Length = 909

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 109/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 555 VNNSIVVIGNQTNVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 614

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       ++                                     F +  + +
Sbjct: 615 KVAYASGLLSNTGLANPAKATAPPLKPSPGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 674

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 675 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 734

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    T+     + L+I+  +SE          P      A T 
Sbjct: 735 TGTVTQNIEYEDIGVNLVVASTIAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 793

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 794 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 853

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 854 SSFEEGTTLTNKEGYR 869


>gi|497225|gb|AAA74040.1| invG [Salmonella enterica subsp. enterica serovar Typhimurium]
          Length = 563

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 95/251 (37%), Gaps = 21/251 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L++A    V L + I ++ +  L+++G   S                 G  +  
Sbjct: 292 EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GTVTIGDKLGV 338

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S    LD   F   ++ALE       ++ P +T+    SA F +      K +   
Sbjct: 339 SLNQSSISTLDGSRFIAAVNALEEKKQATVVSAPGITSSGKCSAIFDNNRTFYTKLIGER 398

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKA 356
               ++    YG ++   P   + G+I + +  E       +     +   +P       
Sbjct: 399 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 456

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   +P G ++++ G  +D      + IP L K+P++G+LFR S  N+          P
Sbjct: 457 STIARVPHGKSLLVGGYTRDANTDTVQSIPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 516

Query: 417 F-LVKPVAMRD 426
             +V P+    
Sbjct: 517 KEIVDPLTPDA 527


>gi|255317692|ref|ZP_05358938.1| general secretion pathway protein D [Chlamydia trachomatis 6276s]
          Length = 760

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/385 (15%), Positives = 128/385 (33%), Gaps = 33/385 (8%)

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETF 167
            ++     +++A L   +    ++         DT V+     +  +  +        + 
Sbjct: 366 YHIKHSDPQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSS 425

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDIL 210
           + +      +  +  K   L+ +  +                   V ++V + E +    
Sbjct: 426 VKEGSAKYGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQ 485

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERA 266
           ++ G      G       + A  +     + GG               S++     L   
Sbjct: 486 RKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQ 540

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL--- 323
             +R  A P++  ++   A      +     VSS           YG+++   P +    
Sbjct: 541 EDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGE 599

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
             G+  + ++T+++    G N  D P    R     V +  G T+++ GL  +     ++
Sbjct: 600 EDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRD 659

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKA 442
           GIP L ++P +G LF     +  +TE+F+  TP ++  P    +        +   +   
Sbjct: 660 GIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDD 719

Query: 443 FFFNRVNKIYGPKEASEVEGQNYKG 467
           F    V      K+A E +     G
Sbjct: 720 FLRALVAGQQAAKQAIERKESTVWG 744


>gi|51103060|gb|AAT96206.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L++   + + +   I ++ R+ L ++  + +
Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                 + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  +     D PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++        E     TP L+
Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534


>gi|167947465|ref|ZP_02534539.1| general secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 241

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/239 (24%), Positives = 91/239 (38%), Gaps = 30/239 (12%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGGDFSVKGVL---- 251
            ++  IAEV  D  K +G Q  + GS SG +      + G   +S+    +  GVL    
Sbjct: 2   LVEAIIAEVSFDKTKDLGVQWIVDGSPSGNTAPVGIINLGTPKISDIAGAAAAGVLPSIP 61

Query: 252 ---------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
                              F  ++ ALE  ++   L+ P++  +  Q A         + 
Sbjct: 62  SGTLIGLGKFFXPPGSGVDFAMLIRALESDSSSNILSTPSILTLDNQEAEIVVAKNVPFL 121

Query: 297 TVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AG 346
           T   +             ++   D G+ L  TP +     I L I+ EVS      +   
Sbjct: 122 TGQYASTGASSTSVNPFQTIQRQDVGLTLRVTPQINEGNAIQLSIEQEVSSIDPTTSAGT 181

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                  R   T V +    TIVL GL+ + +QQ+ E +PLL  IP +G LFR     +
Sbjct: 182 TDIVTNKRTIKTVVMVEDSHTIVLGGLIDEQLQQVDERVPLLGDIPGVGVLFRARNNQQ 240


>gi|158334571|ref|YP_001515743.1| secretion system protein [Acaryochloris marina MBIC11017]
 gi|158304812|gb|ABW26429.1| secretion system protein [Acaryochloris marina MBIC11017]
          Length = 682

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 96/291 (32%), Gaps = 26/291 (8%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
             V  + T             ++  ++  +++    QV + V   +V     K       
Sbjct: 374 EVVADARTNTITLIGTPRKVETATALLTRMDVRQR-QVAINVKFIDVNLLKGKLSNADLQ 432

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL------ERATAIRTL 272
              + S          G   ++         ++    F      L       +    + L
Sbjct: 433 FRANDSLGIGFRPDANGRGGLTSIFGSGTVPIVGSGLFTLTETFLGNLFVSIQNNDAKIL 492

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFT- 319
             PTL    G SA      Q     V             + + +T     + GV+L+   
Sbjct: 493 TNPTLLVQEGSSAQVNLTEQVFTGFVQRVSSSGSTAGATTDSTSTEPNIQNAGVILNVVV 552

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADT-TVELPSGGTIVLAGL 373
             +   G + L +  EVS           +       + R+ +T  V L  G TIVL G+
Sbjct: 553 DHIDDNGFVTLNLSPEVSSLSGRTFVDALSGDTAFLLQQRRVETGKVRLRDGQTIVLTGI 612

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           ++D  +     +P+L  IP+LG LFR     R+ +E+ +  TP +V     
Sbjct: 613 IQDQDRVDVSKVPILGDIPLLGRLFRRENKTRQRSELVVLVTPQIVDDSDQ 663


>gi|76789309|ref|YP_328395.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
 gi|76167839|gb|AAX50847.1| general secretion pathway protein D [Chlamydia trachomatis
           A/HAR-13]
          Length = 760

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|15605301|ref|NP_220087.1| general secretion pathway protein D [Chlamydia trachomatis
           D/UW-3/CX]
 gi|3329013|gb|AAC68174.1| Gen. Secretion Protein D [Chlamydia trachomatis D/UW-3/CX]
 gi|297748702|gb|ADI51248.1| General secretion pathway protein D [Chlamydia trachomatis D-EC]
 gi|297749582|gb|ADI52260.1| General secretion pathway protein D [Chlamydia trachomatis D-LC]
          Length = 760

 Score =  138 bits (348), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|255311391|ref|ZP_05353961.1| general secretion pathway protein D [Chlamydia trachomatis 6276]
 gi|296436106|gb|ADH18280.1| general secretion pathway protein D [Chlamydia trachomatis G/9768]
 gi|296437034|gb|ADH19204.1| general secretion pathway protein D [Chlamydia trachomatis G/11222]
 gi|296437966|gb|ADH20127.1| general secretion pathway protein D [Chlamydia trachomatis G/11074]
 gi|297140467|gb|ADH97225.1| general secretion pathway protein D [Chlamydia trachomatis G/9301]
          Length = 760

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|15836348|ref|NP_300872.1| general secretion protein D [Chlamydophila pneumoniae J138]
 gi|8979189|dbj|BAA99023.1| general secretion protein D [Chlamydophila pneumoniae J138]
          Length = 754

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  V ++V + E +    ++ G      G      G S S +   G   +      S   
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +    ++     L     +R  A P++  ++   A      +     VSS         
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577

Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G 
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  TP +++ PV  +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697

Query: 426 DLSRPDDHYSVEDDAKAF 443
           +        S   + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715


>gi|167906931|ref|ZP_02494136.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 588

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             ++AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVNALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|126445154|ref|YP_001062980.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224645|gb|ABN88150.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 588

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|218892331|ref|YP_002441198.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
 gi|218772557|emb|CAW28340.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa LESB58]
          Length = 600

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P LV 
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLVD 505


>gi|53722417|ref|YP_111402.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|167820148|ref|ZP_02451828.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|52212831|emb|CAH38865.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 588

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDDDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|77918480|ref|YP_356295.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
           2380]
 gi|77544563|gb|ABA88125.1| putative secretion pathway protein [Pelobacter carbinolicus DSM
           2380]
          Length = 606

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 107/334 (32%), Gaps = 44/334 (13%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTI 202
           G     Q+   A+ L+   + +      A S  + ++N +           +QV L+V I
Sbjct: 278 GEQSRQQEDDEAL-LAVLTVFKRNNCIVARSLDEGLLNEMGRIIEALDTPTNQVLLEVRI 336

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
                    Q+              +      G       G  ++  + D   F   +  
Sbjct: 337 L--------QLNLNDGFESFFEFEYEGGDNTLGLLGTKALGATTLNYLFDNDRFRARIAL 388

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA-------------TSVTT 309
            E+   +  ++ P L A +     F  G +   +   +S                  +  
Sbjct: 389 YEKEGRLEVVSTPFLMAANNSKVEFFVGEETPLRGEVTSETTTIKDTGTTLTTFTQEIEE 448

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------------MPSYRVRKA 356
            + G  +  T  + + G + L    E+S P +  +                +      + 
Sbjct: 449 EELGTDVEMTTFINADGTVTLDFDAEISSPQLAYSTVQAVNDITGEILEYPIDGTTKSEI 508

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              +   SG +I + G++++ I      +P+L  IP +G  FR     + +TE  I  TP
Sbjct: 509 KAILSARSGQSIAIGGIIRETIDDSIAKVPVLGDIPGVGFFFREVEKTKSKTETVILLTP 568

Query: 417 FLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
            ++  P     +S+  +    +   +     R N
Sbjct: 569 HVIMHPALAGQVSQ--EFLGRKSSHEQVTVGREN 600


>gi|282899176|ref|ZP_06307153.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195931|gb|EFA70851.1| pilQ(type II and III secretion system protein) [Cylindrospermopsis
           raciborskii CS-505]
          Length = 522

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 100/245 (40%), Gaps = 19/245 (7%)

Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
              QV + + I +V        +     G   +   +  G +     +      S     
Sbjct: 276 RRRQVKVNLKIIDVNLWGIQNYNSSFSFGIGDNFFSNDQGIATFNFGNQRPFTGSGSVPA 335

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298
           S+ G+ +R  F   L A       + L +P+L    GQ+A+     Q + +         
Sbjct: 336 SLGGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQERITRIDTP 393

Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
            +S     +   + G+ ++     +   G + L +   V  PV   + G   +     R 
Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFVSLSVAPVVKSPVNSESPGAGKVTLIAERS 453

Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            ++  + L  G T++L+G+++D  + +   +PLL  IP+LGALFR++  +RE  E+ +  
Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRTVVTKVPLLGDIPLLGALFRSTNKDRERREVIVLL 513

Query: 415 TPFLV 419
           TP ++
Sbjct: 514 TPRII 518


>gi|15618724|ref|NP_225010.1| general secretion protein D [Chlamydophila pneumoniae CWL029]
 gi|16752225|ref|NP_445593.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33242175|ref|NP_877116.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
 gi|4377127|gb|AAD18953.1| General Secretion Protein D [Chlamydophila pneumoniae CWL029]
 gi|7189969|gb|AAF38829.1| general secretion pathway protein D [Chlamydophila pneumoniae AR39]
 gi|33236686|gb|AAP98773.1| general secretion pathway protein D precursor [Chlamydophila
           pneumoniae TW-183]
          Length = 754

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  V ++V + E +    ++ G      G      G S S +   G   +      S   
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +    ++     L     +R  A P++  ++   A      +     VSS         
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577

Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G 
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  TP +++ PV  +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697

Query: 426 DLSRPDDHYSVEDDAKAF 443
           +        S   + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715


>gi|291086622|ref|ZP_06356285.2| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
 gi|291067473|gb|EFE05582.1| type III secretion outer membrane pore, YscC/HrcC family
           [Citrobacter youngae ATCC 29220]
          Length = 505

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 110/302 (36%), Gaps = 23/302 (7%)

Query: 130 FIADSNIRVEMVSDTVVL-HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL- 187
            I      +  ++++  +  G   T  ++ +    +      +   Q A     + +N+ 
Sbjct: 205 VIPGVVSVLREMNNSQAVNSGATPTQLNAGQQTVDNNGPTFSADPRQNAVVVRDRDINMP 264

Query: 188 LNIAGEDQ-------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
           +      Q       + + V+I +V  + L  +G   +      G +     +      +
Sbjct: 265 MYQRLISQLDHRQDAIEITVSIIDVNAEDLGALGIDWAANADIGGMNLQLNTNL-----A 319

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            GG ++   + +   F   + ALE+ +  + L++P++  ++   A          K V  
Sbjct: 320 SGGGYATSVINNGSDFMVKVSALEQKSQAKILSQPSVVTLNNVQAVLDKNTTFYTKLV-- 377

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGR----IGLRIQTE---VSEPVIGVNAGDMPSYRV 353
                 + +   G ++  TP V+        + L +  +     +    V A  MP  + 
Sbjct: 378 GDKIAQLASITSGTLMQVTPRVVKDDEGTAEVLLLLSIQDGSQQQSSAVVAADAMPQVQN 437

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            + DT   L SG +++L G ++D     +  IP+L  I  +G  F++    + +T     
Sbjct: 438 SEIDTQATLKSGQSLLLGGFIQDQDIVTERKIPILGDIYWIGNFFKSKETTKIQTVRLFL 497

Query: 414 AT 415
             
Sbjct: 498 IK 499


>gi|254240060|ref|ZP_04933382.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
 gi|126193438|gb|EAZ57501.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 2192]
          Length = 600

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P L+ 
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505


>gi|51103005|gb|AAT96152.1| HrcC [Pseudomonas viridiflava]
          Length = 697

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/265 (16%), Positives = 85/265 (32%), Gaps = 20/265 (7%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  +K++  L++   + + +   I ++ R+ L ++  + +
Sbjct: 286 RVSADVRNNAVLIYDLPDRKAMYEKLIKELDVP-RNLIEIDAVILDIDRNELAELASRWN 344

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                                 + G  S   + +   F   LHALE   +   +  P++ 
Sbjct: 345 FKSGGVNMF-------------DAGTTSTLFIQNAGKFSAELHALEGNGSASVIGNPSIL 391

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 392 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 449

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  +     D PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 450 DGQIDVSDINADQPSVRKGNVSTQAVIAEHGSLVVGGFHGLEANDKVHKIPLLGDIPYIG 509

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++        E     TP L+
Sbjct: 510 KLLFQSRSREINHRERLFILTPRLI 534


>gi|313110403|ref|ZP_07796289.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
 gi|310882791|gb|EFQ41385.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa 39016]
          Length = 604

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 278 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 337

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 338 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 395

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 396 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 455

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P L+ 
Sbjct: 456 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 509


>gi|34498052|ref|NP_902267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
 gi|34103907|gb|AAQ60267.1| type III secretion system EscC protein [Chromobacterium violaceum
           ATCC 12472]
          Length = 495

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 46/229 (20%), Positives = 89/229 (38%), Gaps = 11/229 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                + + V I +V    L  +G   S + S  G   SF          +G D     +
Sbjct: 267 RKPALIEVSVMIIDVNSQDLSALGIDWSASASIGGNGISF-----NSAGQQGSDNFSTVI 321

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +   F   L+AL++    + L+ P++  +    A          K +  +     + + 
Sbjct: 322 SNTGGFMVKLNALQQKAKAQILSRPSVVTLDNTQAVLDRNITFYTKLL--AEKVAKLESI 379

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGG 366
             G +L  TP ++  G    + L +  +       V+    +P     +  T   L +G 
Sbjct: 380 STGSLLRVTPRLVDEGGQRNVMLTLVIQDGRQAGTVSQHEPLPQTLNAEVSTQTLLKAGQ 439

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +++L G ++D+  + +  IPLL  IP++G LFR+++ N   T       
Sbjct: 440 SLLLGGFVQDEHSEGESKIPLLGDIPLIGKLFRSTQKNSRSTVRLFLIK 488


>gi|237738589|ref|ZP_04569070.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
 gi|229424072|gb|EEO39119.1| general secretion pathway protein D [Fusobacterium sp. 2_1_31]
          Length = 514

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 93/241 (38%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG---PSKSFAADFGGKFVSEGGDFSVKG 249
             QV +   I ++  ++ +++GF      + +     S +            G   ++  
Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNVASEERNSLTAIILGKAGLNGVGSSLNIVR 326

Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303
             +  S    T L+ LE    +   + PTL   SG+   F    + +        + +  
Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            T     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE ++++
Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|171912205|ref|ZP_02927675.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 759

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 93/258 (36%), Gaps = 29/258 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH---------SITGSSSGPSKSFAADFGGKFVSE 241
               Q+ L   I E       + G            ++       + +   +      + 
Sbjct: 444 KRPPQIILSAIIGEFTTGKDFRFGLDWVRTLEQVNDNLVIGGINKTSTTETNAMTDLAAL 503

Query: 242 GGDFSVKGVLDRFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
           G        L   +            L+ LE +     L  P +T ++ + A+ ++G Q 
Sbjct: 504 GNVADFLPALQGLTVYGKIGKHLNVFLNTLEESDRFHVLQRPYVTTLNHKKATISTGQQL 563

Query: 294 LYKTVSSSTGA----------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--I 341
                + S+G           ++       + L   P +     + L    +  +     
Sbjct: 564 AIPGQTYSSGIGSDPDTNGFVSNTQYIPAELKLDIVPHIYDKNEVKLEFVQQNLDIASYT 623

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
            ++   +P+   +    TV +P+G TI+L GL+ +  +  K G+P+LS+IP++  LF ++
Sbjct: 624 TISGNQVPNLSTQTLSNTVVVPNGATIILGGLITERDRNNKSGVPVLSRIPLVKHLFGST 683

Query: 402 RFNREETEIFIAATPFLV 419
              +E  E+ I   P +V
Sbjct: 684 AKTKERRELMIFVQPIIV 701


>gi|41019214|gb|AAR98526.1| HrcC [Pseudomonas syringae pv. phaseolicola]
          Length = 699

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 48/265 (18%), Positives = 90/265 (33%), Gaps = 16/265 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                      +K++  L+++  + + +   I ++ R+ L ++  + +
Sbjct: 284 RVTADVRNNAVLIYDLPSRKPMYEKLIKELDVS-RNLIEIDAVILDIDRNELAELFNRWN 342

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
              SS G   +           + G  S   + +   F + LHALE   +   +  P++ 
Sbjct: 343 FNASSVGGGVNLF---------DAGTSSTMFIQNAGKFXSELHALEGNGSASVIGNPSIL 393

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A               S    ++     G  L   P  L      ++ L +  E
Sbjct: 394 TLENQPAVIDFSRTEYITAT--SERVANIEPITAGTSLQVIPRSLDHDGKPQVQLIVDIE 451

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             +  I       PS R     T   +   G++V+ G    +       IPLL  IP +G
Sbjct: 452 DGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKIPLLGDIPYIG 511

Query: 396 A-LFRNSRFNREETEIFIAATPFLV 419
             LF++      + E     TP L+
Sbjct: 512 KLLFQSRSRELGQRERLFILTPRLI 536


>gi|107101148|ref|ZP_01365066.1| hypothetical protein PaerPA_01002180 [Pseudomonas aeruginosa PACS2]
 gi|254234815|ref|ZP_04928138.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
 gi|296389899|ref|ZP_06879374.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAb1]
 gi|1781385|gb|AAC44774.1| PscC [Pseudomonas aeruginosa]
 gi|126166746|gb|EAZ52257.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa C3719]
          Length = 600

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P L+ 
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505


>gi|312597809|gb|ADQ89924.1| RscC [Pseudomonas fluorescens]
          Length = 716

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                        ++  +++  +  V +   I ++ R  L ++    +
Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +               GG  +   G  S   + D   F   L ALE       +A P++ 
Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A            +       +V     G  L   P  +  G   +I + ++ E
Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                        PS R     T   +    ++V+ G   ++     E +P L +IP++G
Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527

Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
             LF ++       E     TP L+   V         D   V+         R N    
Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586

Query: 454 PKE 456
              
Sbjct: 587 VGR 589


>gi|15596913|ref|NP_250407.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
 gi|9947691|gb|AAG05105.1|AE004598_4 Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa PAO1]
          Length = 600

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P L+ 
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505


>gi|330819413|ref|YP_004348275.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
 gi|327371408|gb|AEA62763.1| Type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia gladioli BSR3]
          Length = 596

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 49/276 (17%), Positives = 89/276 (32%), Gaps = 31/276 (11%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA- 231
                     +++  L++     V ++  I E+  D L+QIG       S        A 
Sbjct: 323 DTPDRVGQYGELIRQLDVR-PQIVEIQAHIIEIDDDTLQQIGVDWRAHNSHVDFQTGNAQ 381

Query: 232 -----------------------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
                                   +        G   S             + AL+    
Sbjct: 382 QAQNSFDGGQLNPLFGTVQQAGPGNTIVNATPGGAALSAVVGGAGRYLMARVSALQSTNK 441

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-- 326
            +  A P +  +    A+  +  +   K    ++    + +   GV L   P ++     
Sbjct: 442 TKIDASPLVATLDNVEATMDNTTRFFVKVAGYTSAD--LYSVSTGVSLRVLPLIVRDQDK 499

Query: 327 -RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            RI L +  E  +        D+P     + +T   +  G ++++AG   D       G+
Sbjct: 500 TRIKLNVHIEDGQLT-QQKVDDIPVITTSQINTQAFVGLGESLLIAGFTTDTQTNGVTGV 558

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           P LS+IP+LGALFR    +    E     TP ++  
Sbjct: 559 PFLSRIPLLGALFRYHSDDHSHGERVFLLTPRIIDA 594


>gi|269302606|gb|ACZ32706.1| putative general secretion pathway protein D [Chlamydophila
           pneumoniae LPCoLN]
          Length = 754

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/258 (19%), Positives = 98/258 (37%), Gaps = 9/258 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSS---SGPSKSFAADFGGKFVSEGGDFSVKG 249
           +  V ++V + E +    ++ G      G      G S S +   G   +      S   
Sbjct: 460 KKMVRIEVLLFERKLAHEQKSGLNLLRLGEEVCKKGCSPSVSWAGGTGILEFLFKGSTGS 519

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
            +    ++     L     +R  A P++  ++   A      +     VSS         
Sbjct: 520 SI-VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAVVDEM-SIAVSSDKDKAQYNR 577

Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G 
Sbjct: 578 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNHDDRPDVTRRNITNKVRIADGE 637

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           T+++ GL    +    +GIP L  IP +G LF  S  +   TE+F+  TP +++ PV  +
Sbjct: 638 TVIIGGLRCKQMSDSHDGIPFLGDIPGIGKLFGMSSTSDSLTEMFVFITPKILENPVEQQ 697

Query: 426 DLSRPDDHYSVEDDAKAF 443
           +        S   + + +
Sbjct: 698 ERKEEALLSSRPGEREEY 715


>gi|148979183|ref|ZP_01815362.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
 gi|145961941|gb|EDK27231.1| fimbrial assembly protein [Vibrionales bacterium SWAT-3]
          Length = 564

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 119/312 (38%), Gaps = 31/312 (9%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   ++D +   G V  + D         T        +   +  + ++  L+I  + QV
Sbjct: 253 KATDIADMIGGEGAVSMLSDRGSITIDERTNSLLIRELEENIAVIRGIIESLDIPVK-QV 311

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  V      ++G +  ++ ++   +   +                         
Sbjct: 312 QIEARIVTVTEGNFDELGVRWGVSSTNGSFTVGGSIEGNHPSAITPYDDDGGSSVIDDYL 371

Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     +    F V  +      +  L AL++ +    ++ P L   + + A    
Sbjct: 372 NVNLAATSPNASSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKPAYIEQ 431

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGD 347
           G +  Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+
Sbjct: 432 GTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVVKTGTGE 490

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S  N  +
Sbjct: 491 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSVSSTVDKVPLLGDLPLLGALFRRSYENVGK 550

Query: 408 TEIFIAATPFLV 419
           +E+ I  TP +V
Sbjct: 551 SELLIFVTPKVV 562


>gi|15643874|ref|NP_228923.1| general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
 gi|4981663|gb|AAD36193.1|AE001770_5 general secretion pathway protein D, putative [Thermotoga maritima
           MSB8]
          Length = 387

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/339 (17%), Positives = 115/339 (33%), Gaps = 36/339 (10%)

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
            +     +   ++   +      +      V    D   L G       + R + +++T+
Sbjct: 53  TVTGFITMELNEVPLEQALKMILMPGG--YVFKKMDGFYLVGSPDPANPAFRYLAVTKTY 110

Query: 168 LSQSGRNQYANSSSKKV----------MNLLNIAGED------------------QVTLK 199
             +      A      V           N++ I   +                  QV + 
Sbjct: 111 KLKYITTADAQELLPAVYKSYVKFNEKNNMVTITAPEEIIQEFEEDLKKIDIPIPQVKIS 170

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           V + EV +D   ++G         SG   +         V+   D               
Sbjct: 171 VIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTGIIDVQTDVFG---QILAQ 227

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L  LE     +  A+P +   SG+ AS    G+     + +    + + + D GV +   
Sbjct: 228 LKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAEGAVSRIESIDVGVSIDIQ 286

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P V+    + L +  +VS            + +  +  TT+ L +G T+V++G   +D  
Sbjct: 287 PRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLFLKNGQTVVISGATIEDSA 344

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 345 QTSSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|116049666|ref|YP_791529.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115584887|gb|ABJ10902.1| Type III secretion outer membrane protein PscC precursor
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 600

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 81/234 (34%), Gaps = 13/234 (5%)

Query: 198 LKV--TIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG-----GKFVSEGGDFSVKGV 250
           ++V  +I ++  + L Q+G   S                G     G     G   S+   
Sbjct: 274 IEVGLSIIDINAENLAQLGVDWSAGIRLGNNKSIQIRTTGQDSEEGGGAGNGAVGSLVDS 333

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    +  L+     +  + PTL       A       +  +          +   
Sbjct: 334 RGLDFLLAKVTLLQSQGQAQIGSRPTLLTQENTQAVLDQSETYYVRVT--GERVAELKAI 391

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            YG +L  TP V++ G    I L +  E  S+         +P+      DT   +  G 
Sbjct: 392 TYGTMLKMTPRVVTLGDTPEISLSLHIEDGSQKPNSAGLDKIPTINRTVIDTIARVGHGQ 451

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++++ G+ +D++ Q +  +P L  IP LGALFR +      +       P L+ 
Sbjct: 452 SLLIGGIYRDELSQSQRKVPWLGDIPYLGALFRTTADTVRRSVRLFLIEPRLID 505


>gi|322646886|gb|EFY43389.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|323203179|gb|EFZ88208.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 456

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 61/403 (15%), Positives = 135/403 (33%), Gaps = 43/403 (10%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +   +   I +G  K+ ++++        V D T     +   + +      
Sbjct: 51  DMVVNAATMMDKQNDGIELGRQKIGVMRLNNT----FVGDRT---YNLRDQKMVI----- 98

Query: 94  VGQANVI--LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
            G A  I  L+  + + + N+       +                +    +  + L   +
Sbjct: 99  PGIATAIERLLQGEEQPLGNIVSSEPPAMPAFSAN------GEKGKAANYAGGMSLQEAL 152

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           +    +     ++    +       A      + ++  L++A    V L + I ++ +  
Sbjct: 153 KQNAAAGNIKIVAYPDTNSLLVKGTAEQVHFIEMLVKALDVAKRH-VELSLWIVDLNKSD 211

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+++G   S             +   G  +    + +    LD   F   ++ALE     
Sbjct: 212 LERLGTSWS------------GSITIGDKLGVSLNQASISTLDGSRFIAAVNALEEKKQA 259

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             ++ P L       A F +      K +       ++    YG ++   P   + G+I 
Sbjct: 260 TVVSRPVLLTQENVPAIFDNNRTFYTKLIGERN--VALEHVTYGTMIRVLPRFSADGQIE 317

Query: 330 LRIQTEVSEP-----VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           + +  E             +   +P        T   +P G ++++ G  +D      + 
Sbjct: 318 MSLDIEDGNDKTPQSDTTTSVDALPEVGRTLISTIARVPHGKSLLVGGYTRDANTDTVQS 377

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRD 426
           IP L K+P++G+LFR S  N+          P  +V P+    
Sbjct: 378 IPFLGKLPLIGSLFRYSSKNKSNVVRVFMIEPKEIVDPLTPDA 420


>gi|330812422|ref|YP_004356884.1| type III secretion protein [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327380530|gb|AEA71880.1| putative type III secretion protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 716

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 89/303 (29%), Gaps = 18/303 (5%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                        ++  +++  +  V +   I ++ R  L ++    +
Sbjct: 300 RVEADVRNNAVLIYDAPKRREIYTPLIRDVDVPRKL-VEIDAIILDIDRTQLAELASNWN 358

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +               GG  +   G  S   + D   F   L ALE       +A P++ 
Sbjct: 359 VESGDL---------IGGASMIRPGASSTVFIQDYGDFSAQLRALEGRGLASVVANPSVL 409

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A            +       +V     G  L   P  +  G   +I + ++ E
Sbjct: 410 TLENQPAVIDFSRTEYISAI--GERVATVEPITAGTSLQVVPHAIETGGRNQIQMSLEIE 467

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                        PS R     T   +    ++V+ G   ++     E +P L +IP++G
Sbjct: 468 DGRIEPSEVGQQTPSVRRGVVSTQAVMGESRSLVVGGFHTEETGDNLERVPWLGRIPLIG 527

Query: 396 A-LFRNSRFNREETEIFIAATPFLV-KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYG 453
             LF ++       E     TP L+   V         D   V+         R N    
Sbjct: 528 PLLFSSTTRETSRRERVFILTPRLIGDQVDPARYISALDREQVDSAMAR-LEERRNGTRP 586

Query: 454 PKE 456
              
Sbjct: 587 VGR 589


>gi|325921916|ref|ZP_08183727.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
 gi|325547618|gb|EGD18661.1| HrcC protein [Xanthomonas gardneri ATCC 19865]
          Length = 606

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 42/241 (17%), Positives = 82/241 (34%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243
            +  TI E+R   ++ +G                       +                  
Sbjct: 369 QIDATIIEIRDGAMQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGATAPLGG 428

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE+    + ++ P +  +    A      Q   +   S   
Sbjct: 429 TLTAVLGDAGRYLMTRVSALEQTDKAKIVSTPQVATLDNVEAVMDHKQQAFVRV--SGYA 486

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           A  +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 487 AADLYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 545

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG  +D  Q     +P LSKIP++G LF++ + +    +     TP +V 
Sbjct: 546 FVNEGQSLLIAGYAQDTDQTDLNKVPGLSKIPLVGNLFKHRQKSGSRLQRLFLLTPHIVS 605

Query: 421 P 421
           P
Sbjct: 606 P 606


>gi|307297353|ref|ZP_07577159.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
 gi|306916613|gb|EFN46995.1| type II and III secretion system protein [Thermotogales bacterium
            mesG1.Ag.4.2]
          Length = 3898

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/327 (16%), Positives = 122/327 (37%), Gaps = 32/327 (9%)

Query: 104  HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL 163
              G++  +++++        E+T         +  + V+  +V+ G+ ++        + 
Sbjct: 3595 KAGEEPTDVELVYRVYHNVEELTRLIEFYGGEVLSDPVNGYIVVRGLAKS--RVDNIFDE 3652

Query: 164  SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR--RDILKQIGFQHSITG 221
              + LSQ                      + QV ++  + +     +I ++I     I  
Sbjct: 3653 IGSALSQP---------------------KKQVRIETRLVDESLIDEIQREIKTSIGINA 3691

Query: 222  SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                          G          +  +++  + +      +R      ++ P++ ++S
Sbjct: 3692 PEILIENGSVDLDFGIIDYLDITQLIDDLVNTGTVKIEADLSDRDNDSDLISSPSIVSMS 3751

Query: 282  GQSASFTSGGQHLY------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
            G+ A    G    Y          +     ++   + GV L  TPTV   G+I L +  +
Sbjct: 3752 GEEAKIHIGDTIPYLVRTIEYVEGNPVEIETIEYLNTGVELRITPTVNDDGKILLDLFIK 3811

Query: 336  VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            VSEP   V+    +   + R+A++ + +  G T+ + GL+ +        +P LS +P +
Sbjct: 3812 VSEPEKYVDGTRTLYGEKTREANSRLIISDGNTLTIGGLVANKDTVTVNKMPFLSDLPFI 3871

Query: 395  GALFRNSRFNREETEIFIAATPFLVKP 421
            G LF       ++ E+ I  T  +V+P
Sbjct: 3872 GKLFTTENKTSDKRELVIFITAEVVEP 3898


>gi|255348953|ref|ZP_05380960.1| general secretion pathway protein D [Chlamydia trachomatis 70]
 gi|255503492|ref|ZP_05381882.1| general secretion pathway protein D [Chlamydia trachomatis 70s]
          Length = 760

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPIINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMDSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|312602771|ref|YP_004022616.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|306431574|emb|CBK52126.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
 gi|312170085|emb|CBW77097.1| type III secretion outer membrane pore SctC [Burkholderia
           rhizoxinica HKI 454]
          Length = 645

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 26/261 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG------------------SS 223
           + +++ L++     V ++  I EV  D LKQIG                          +
Sbjct: 386 QSLIDALDVK-PRLVEIEAHIIEVDDDALKQIGVDWRAHNSHVDLQTGNGLHSPSSYDGT 444

Query: 224 SGPSKSFAADFGGKFVSE---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             P+ +  +  G   +S    G   +             + AL+ A   R  A P +  +
Sbjct: 445 LNPTFTSNSSDGTTVISTAPLGASLTAVLGNAGRYLLARVDALQSANLARIDASPKVATL 504

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEP 339
           S   A      +   +    ++    + +   GV L   P  V   GR  ++++  + + 
Sbjct: 505 SNAEAVMDHKTRFFVRVAGYTSAD--LYSVSTGVSLRVRPLVVEEDGRTRIKLEVHIEDG 562

Query: 340 VIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            +       +P       +T   +    ++++AG   D    L+ GIPLLSKIP++G LF
Sbjct: 563 QVTNQLVDHIPVITTSTINTEAFVGQNESLLIAGYRTDSSSNLETGIPLLSKIPLIGGLF 622

Query: 399 RNSRFNREETEIFIAATPFLV 419
           R     R   E     +P ++
Sbjct: 623 RYRSDQRSHMERIFLLSPRII 643


>gi|166154787|ref|YP_001654905.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|166155662|ref|YP_001653917.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301336062|ref|ZP_07224306.1| general secretion pathway protein D [Chlamydia trachomatis L2tet1]
 gi|165930775|emb|CAP04272.1| general secretion pathway protein D [Chlamydia trachomatis 434/Bu]
 gi|165931650|emb|CAP07226.1| general secretion pathway protein D [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 760

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       + A  +     + GG         
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522

Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                 S++     L     +R  A P++  ++   A      +     VSS        
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581

Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
              YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
            T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+  TP ++  P   
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            +        +   +   F    V      K+A E +     G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744


>gi|126456443|ref|YP_001075927.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|134282510|ref|ZP_01769214.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|167742975|ref|ZP_02415749.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167849982|ref|ZP_02475490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898588|ref|ZP_02485989.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
 gi|167915290|ref|ZP_02502381.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
 gi|167923124|ref|ZP_02510215.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
 gi|242313713|ref|ZP_04812730.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186704|ref|ZP_04893220.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|254194157|ref|ZP_04900589.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|254301616|ref|ZP_04969060.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|126230211|gb|ABN93624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|134246067|gb|EBA46157.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|157811506|gb|EDO88676.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157934388|gb|EDO90058.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|169650908|gb|EDS83601.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|242136952|gb|EES23355.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 588

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|14719865|gb|AAK73229.1| SctC [Burkholderia pseudomallei]
          Length = 588

 Score =  137 bits (346), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|167724007|ref|ZP_02407243.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
 gi|254183789|ref|ZP_04890381.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184214322|gb|EDU11365.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 588

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|289525617|emb|CBJ15095.1| general secretion pathway protein D [Chlamydia trachomatis Sweden2]
          Length = 760

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       + A  +     + GG         
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522

Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                 S++     L     +R  A P++  ++   A      +     VSS        
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581

Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
              YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
            T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+  TP ++  P   
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            +        +   +   F    V      K+A E +     G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744


>gi|254264333|ref|ZP_04955198.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215335|gb|EET04720.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 588

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARHLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|319795612|ref|YP_004157252.1| type III secretion outer membrane pore, yscc/hrcc family
           [Variovorax paradoxus EPS]
 gi|315598075|gb|ADU39141.1| type III secretion outer membrane pore, YscC/HrcC family
           [Variovorax paradoxus EPS]
          Length = 613

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 59/381 (15%), Positives = 121/381 (31%), Gaps = 35/381 (9%)

Query: 74  PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
           P  A+V+    R++Y  G++ G     +    G+   +   +       L          
Sbjct: 226 PGVANVL----RSLY--GRHNGATGSAV-SGGGRVNGSSLSIGPNRQIKLRSGESINAPK 278

Query: 134 SNIR-VEMVSDT-VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             +  V  + D    L G+     +  +    +              +  ++++  +++ 
Sbjct: 279 MELSGVGSMGDGGATLGGVSGIGGELPQFQADTRMNAVLVRDTPARMAQYERLIASMDVR 338

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS---------------------GPSKSF 230
               + ++VTI ++  D L  +G    + G                        G     
Sbjct: 339 -PRLIEIEVTIMDISSDTLSSLGVDWRLHGRHYDFQTGRGDRGPLTWDGSGNEAGQIGGV 397

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
            ++            +  G   R      + AL        +A P +  +    A   + 
Sbjct: 398 NSNGNPVTPLGAMFTAAIGNSARNYLLARVTALASNGEANFVARPKVMTLDNTEAVLENM 457

Query: 291 GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDM 348
            +   +          + +   G  +  TP ++    GR  +     V   V       +
Sbjct: 458 SEFYVRVDGFQDAG--LFSVTAGTAVRVTPLIIDEKTGRGVMMSIDIVDGDVSTQAVDRI 515

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P  R R  +T   +  G ++++AG   ++      G+PLL  +P +G LF+ S   +   
Sbjct: 516 PIVRRRSVNTQALVDEGASLLIAGYSSEERANAVTGVPLLKDLPGVGNLFKYSDKKQVNM 575

Query: 409 EIFIAATPFLVKPVAMRDLSR 429
           E F   TP LV P +   L  
Sbjct: 576 ERFYLLTPRLVSPGSSTALPT 596


>gi|310779606|ref|YP_003967939.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
 gi|309748929|gb|ADO83591.1| type II and III secretion system protein [Ilyobacter polytropus DSM
           2926]
          Length = 594

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 58/351 (16%), Positives = 128/351 (36%), Gaps = 52/351 (14%)

Query: 103 GHDGKQMLNLDILIERDIAH-LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
              G +++   + +   +   ++  +   + +  +      + ++L G    I  +    
Sbjct: 225 DDSGSELMTTRVTLRHALPDDVKTVVESAMREVEVSSFPKLNMIILKGTSSNILPA---- 280

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
                               KK++  L++  + QV +   + +V+ ++ + +GF  +   
Sbjct: 281 --------------------KKLIEDLDLPQK-QVRITAQVLDVKDNLFETLGFDWAYDS 319

Query: 222 SS-----SGPSKSFAADFG----GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
           +       G S +F         G   S   +F+             ++ L+    +   
Sbjct: 320 NGTSTYTDGTSGTFLGTSTDVGIGTGYSSAIEFAQSFNGGDDVLGVSINMLQSDQDMIIS 379

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----THDYGVVLHFTPTV----LS 324
           A P++  ++G+ A F++  + +           + T      + G+V +  P +      
Sbjct: 380 AVPSVVVLNGEEAEFSTTEEVIVGYEEEEDDDGNTTTTPMFEEAGLVFNVKPIIRTGADG 439

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYR---------VRKADTTVELPSGGTIVLAGLLK 375
              I L + TEVS   +   + D  +            R  DTTV + SG ++ + G+ +
Sbjct: 440 GDTILLTLSTEVSNFNLVSTSADSDATTYNEDGGSKASRNIDTTVSVKSGESLFIGGMKR 499

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D+  +   IPLL  +P +G LFRN     E  +I+I     ++      D
Sbjct: 500 ADVSNVTSKIPLLGDLPFVGFLFRNEAVESELRDIYIKIRAEIITDENRED 550


>gi|237507548|ref|ZP_04520263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|234999753|gb|EEP49177.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 588

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|255507170|ref|ZP_05382809.1| general secretion pathway protein D [Chlamydia trachomatis
           D(s)2923]
 gi|296435178|gb|ADH17356.1| general secretion pathway protein D [Chlamydia trachomatis E/150]
 gi|296438898|gb|ADH21051.1| general secretion pathway protein D [Chlamydia trachomatis E/11023]
          Length = 760

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 52/283 (18%), Positives = 102/283 (36%), Gaps = 14/283 (4%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       + A  +     + GG         
Sbjct: 468 KKMVRIEVLLFERKLSNQRKSGLNLLRLGEEVCKQGTQAVSW-----ASGGILEFLFKGG 522

Query: 253 R----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
                 S++     L     +R  A P++  ++   A      +     VSS        
Sbjct: 523 AKGIVPSYDFAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYN 581

Query: 309 THDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
              YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G
Sbjct: 582 RAQYGIMIKILPVINIGEEDGKSFITLETDITFDSTGRNHADRPDVTRRNITNKVRIQDG 641

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAM 424
            T+++ GL  +     ++GIP L ++P +G LF     +  +TE+F+  TP ++  P   
Sbjct: 642 ETVIIGGLRCNQTMDSRDGIPFLGELPGIGKLFGMDSASDSQTEMFMFITPKILDNPSET 701

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
            +        +   +   F    V      K+A E +     G
Sbjct: 702 EEKLECAFLAARPGENDDFLRALVAGQQAAKQAIERKESTVWG 744


>gi|330444063|ref|YP_004377049.1| type III secretion protein SctC [Chlamydophila pecorum E58]
 gi|328807173|gb|AEB41346.1| type III secretion protein SctC [Chlamydophila pecorum E58]
          Length = 908

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 60/344 (17%), Positives = 118/344 (34%), Gaps = 52/344 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  +V++LLN       QV ++V I +   +     G Q    G+   
Sbjct: 554 VNNSIVVVGNQANVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGNEQS 613

Query: 226 PSKSFAADFGGKFVSEG---------------------------------GDFSVKGVLD 252
                +       +S                                     F +  + +
Sbjct: 614 KVAYASGLLSNSVISNTAKATVPPGVPTPGSLSLPTPAQMTGFSDMMSSSSAFGLGIIGN 673

Query: 253 --------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
                     +   +L AL++      +  P + A   Q ASF  G    Y+T       
Sbjct: 674 VISHKGKSFLTLGGLLSALDQDGDTIIVLNPRIMAQDTQQASFFVGQNIPYQTTSTIIQE 733

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + +   ++   D GV L  T TV     + L+I+  +SE          P      A T 
Sbjct: 734 TGSVTQNIEYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 792

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 793 MQVPDGCFLVMSGHIRDKTTKIVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 852

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQ 463
                       + Y    +A+A     +     P    +   +
Sbjct: 853 SSFEEGSDLTNKEGYRYNWEAEA---GSMQVAPRPAPECQRPPR 893


>gi|22299887|ref|NP_683134.1| putative general secretion pathway protein D [Thermosynechococcus
           elongatus BP-1]
 gi|22296072|dbj|BAC09896.1| tlr2344 [Thermosynechococcus elongatus BP-1]
          Length = 719

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/374 (17%), Positives = 117/374 (31%), Gaps = 40/374 (10%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIAD--SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
            +G   L    L+E   A+L  T +         ++V   +  VV      T+      V
Sbjct: 334 REGDLQLGAVQLLEMYGANLPDTGQAQAPAGCEQLQVPPAAGGVVSQICRSTLLKGLEVV 393

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QI 213
               T              + +++   +I  + QV + V   +V     +          
Sbjct: 394 GDPRTNTITLIGTPRKVEIATQLIQQFDIR-KRQVMVNVKFIDVNLSRTRTANADLITNF 452

Query: 214 GFQ-HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAI 269
           G        SS G S           ++        G        +F   +         
Sbjct: 453 GSGLWGAIFSSEGLSVIRGTTPNVGSLTPQPLPPFPGTPVGSLLSNFFAQIQLAIDTGNA 512

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATSVTTHDYGVVLH 317
             L  PTL    G +A      +      S+            ++   +      GV+ +
Sbjct: 513 TILTNPTLVIQEGSAAQVNLTQEIFSGIQSTVSSQATGSGAAITSQQITPIIRPAGVIFN 572

Query: 318 FT-PTVLSPGRIGLRIQTEVSEPVIGVN----AGDMPSYRV-----RKADTTVELPSGGT 367
            T   +   G I L++  EVS P    +      D PS        R     + L  G T
Sbjct: 573 VTVDQIDDNGFITLQLSPEVSAPTDTYDVVFPGVDNPSIGTLLAQRRMESGRIRLRDGQT 632

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD- 426
           ++LAG+++D  +     +P+L  IP+LG LFR    +R+  E+ +  TP ++        
Sbjct: 633 LMLAGIIQDQDRSTVTKVPILGDIPLLGRLFRRESNSRQRNELVVMVTPKIIDDTQNAGF 692

Query: 427 --LSRPDDHYSVED 438
                P       +
Sbjct: 693 GYQYSPTPGSMPPN 706


>gi|222055737|ref|YP_002538099.1| type II and III secretion system protein [Geobacter sp. FRC-32]
 gi|221565026|gb|ACM20998.1| type II and III secretion system protein [Geobacter sp. FRC-32]
          Length = 805

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 69/394 (17%), Positives = 145/394 (36%), Gaps = 46/394 (11%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V +  T+ ++ K+  +          + ++    L + D       +R  +    I V 
Sbjct: 244 KVLNENTIIVYTKSPEKTK-----QYEELIVQTFYLNKLDAKKAVNLIRTMLQVKKIYVN 298

Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL-------SETFLSQSGRNQYANSSSKKVMNLLNIAG 192
              + +V+      I+ +Q+ ++            +      +    S    ++   ++ 
Sbjct: 299 EEMNALVIRDTPEVIEVAQKILDANDVPDAEVVLEVEVLEFTKSNAESFGLALSRYAVST 358

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
                    +       L  +  Q + T S++  + + + +    F   G +  +     
Sbjct: 359 AA-----AKVG--ASTFLSDVLVQPTSTSSTTTSTTTSSDNLLSLFRWRGFNGFLTVPNA 411

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----ATSVT 308
            F+F   L          TLA P +   + + A F  G +    T S++        +V 
Sbjct: 412 TFNFGKTLS------NSETLANPKIRVKNREKAKFNVGTRVPITTTSTNGTSIGVNVNVQ 465

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362
             D GV ++  PT+     + +++  EVS      +     +   + +   R  DT + L
Sbjct: 466 YVDVGVKVNAEPTIQLNNEVSIKLSLEVSTILSKDKIGDASSLTTVVTIGTRNLDTVLSL 525

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T ++ GL++DD  + K+ + +L  IPI+G L  N+     ++E+ +A TP +V+ V
Sbjct: 526 KDGETSIIGGLIQDDKSKSKQKVMVLGDIPIIGPLLSNNDNTNRKSELVLAITPRVVRSV 585

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
                         E DA  F+  R ++    K 
Sbjct: 586 -----------TVPEGDAAGFWSGREDEPSLSKP 608


>gi|196233070|ref|ZP_03131918.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
 gi|196222877|gb|EDY17399.1| type II and III secretion system protein [Chthoniobacter flavus
           Ellin428]
          Length = 874

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 14/218 (6%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S        +   + D        GG      V    S   ++ AL      R +  
Sbjct: 578 VDVSSGHGILNFNNLLSQDTIRSVAGVGGSGVTGFVTAGNSLTAIVTALMNTNRFRVVTR 637

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVLHFTPTV 322
           P++   + + A   SG +    T   S               +SV      + L   P +
Sbjct: 638 PSVFTRNNKKAIIASGQEIPVPTSIQSALNAGTTVNTGLVTQSSVQFKRVALQLEVVPLI 697

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            +   + L +  ++ +       +  D+P+   R   T+V +P+ GT+VL GL++  + +
Sbjct: 698 NADREVSLDVLQKIDQVSGSTRIDNNDIPNIATRYVKTSVTVPNEGTVVLGGLIQQSMNK 757

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           ++ GIPLLS IP LG LF ++   +  TE+ I   P +
Sbjct: 758 VRSGIPLLSSIPGLGYLFSSTTKEKIRTELVILIRPEV 795


>gi|284007407|emb|CBA72822.1| type III secretion outer membrane pore, YscC,HrcC,InvG
           [Arsenophonus nasoniae]
          Length = 539

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 94/245 (38%), Gaps = 18/245 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K++  L+I     + L V I ++ +  L Q+G + S  G+  G     + + G       
Sbjct: 285 KIVEQLDITKRH-IELSVWIIDIEKKALDQLGIKWSG-GAKIGQKLGVSLNAGTS----- 337

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
                   +D  SF T + AL R      ++ P +       A F +      K +    
Sbjct: 338 -------TIDGASFMTAIFALTRNDKANIVSRPMVLTQENIPAIFDNNRTFYTKLI--GE 388

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
            AT +    YG  +   P      +I + I  E       +    +P        T   +
Sbjct: 389 RATDLKNVTYGTAISVLPRFTINNQIEMMITVEDGSRAGQIT-DHLPEIGRTNISTIARV 447

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKP 421
           P   ++++ G  +D+ + ++E IPLL  IP LG+LFR +   ++         P  ++ P
Sbjct: 448 PQNKSLLIGGYTRDEHRNIEEKIPLLGDIPYLGSLFRYNIEKKDSLVRVFLIQPREIINP 507

Query: 422 VAMRD 426
           ++   
Sbjct: 508 LSTSA 512


>gi|182440996|dbj|BAG24121.1| HrcC [Pseudomonas cichorii]
          Length = 672

 Score =  137 bits (345), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 82/273 (30%), Gaps = 17/273 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +   I ++ R  L  +  + S    S     S             G  +   + D   
Sbjct: 301 VEIDAIILDIDRTQLSALESRWSARAGSVNFGSSLL----------TGGSATLSISDFDR 350

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + ALE       +A P++  +  Q A                    +V +   G  
Sbjct: 351 FFADIQALEGQGGASVIARPSVLTLENQPAVIDFSRTAYITAT--GERVANVQSVTAGTS 408

Query: 316 LHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           L   P  ++     R  L I  E  +     +    P  +     T   +    ++V+ G
Sbjct: 409 LQVIPRTIAGAQANRFQLIIDIEDGQLDRSRDGET-PDVKRGTVSTQAVISENRSLVIGG 467

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
              D+  Q  + +PLL  +P+LG LF + R      E     TP L+            +
Sbjct: 468 FHVDETGQHHDKVPLLGDLPVLGPLFTSKRQEVSRRERLFILTPRLIGDQIDPARYIASE 527

Query: 433 HYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNY 465
           +   + D         N     K A      + 
Sbjct: 528 N-RPQLDKALALSGSPNSRERKKIAISKAFADL 559


>gi|260770882|ref|ZP_05879811.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
 gi|260614119|gb|EEX39309.1| type IV pilus biogenesis protein PilQ [Vibrio furnissii CIP 102972]
          Length = 574

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%)

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
                + +  K         +    +Q L    + E         ++   A ++   +M+
Sbjct: 217 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 269

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
                  G V  + +         T               + ++  L+I  + QV ++  
Sbjct: 270 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 324

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232
           I  V    L ++G +   + ++   +   +                              
Sbjct: 325 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 384

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L A++R +    ++ P L   + Q A    G +
Sbjct: 385 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 444

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
             Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+  +
Sbjct: 445 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 503

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S     ++E+
Sbjct: 504 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 563

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 564 LIFVTPKVV 572


>gi|182412463|ref|YP_001817529.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177839677|gb|ACB73929.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 596

 Score =  137 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 14/227 (6%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF--SVKGVLDRFSFETVLHA 262
           V       IG   + T +S   + +         ++       ++  V     F  V+ A
Sbjct: 312 VTATSGTTIGSSLTNTTNSGNSTTANETLNLLNSLTGTTTNERALNAVFTADQFGLVISA 371

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-----THDYGVVLH 317
           L   T  + ++ PT+  ++   A    G ++     + +    S           G++L 
Sbjct: 372 LNELTTAKVVSNPTVVTLNNTEAFINIGKEYPIPNYTYNEQRGSFEVAGFTYKPIGIILK 431

Query: 318 FTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
            TP V + G I L I+ EVS           G     +P  + +KA T + L  G T+ +
Sbjct: 432 VTPQVNARGFIKLMIEPEVSSFNDADSVNFGGATGARIPVIQTKKARTQISLKDGFTMGI 491

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            GL+   +      +P+L  IP+LG LF +   +     + I  T  
Sbjct: 492 GGLIDSQVSNGSTKVPVLGSIPVLGRLFSSKTQSTATRNLLIFLTAK 538



 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 75/244 (30%), Gaps = 24/244 (9%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVII------LQVPVDVQDVLVSDP 74
           PS          ++A  + S          S    +         +  P +    ++ + 
Sbjct: 33  PSEPAAAVTSPTDSASGDPSVAIKDADATGSATKGRSATGQDTLSVDFPDEDIRNILRN- 91

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
             AD+   +   + +     G+A++ L     +Q+  + +         E  +   ++++
Sbjct: 92  -VADLFELN---LVIPETLQGKASIKLRDVTWRQIFQVILTPVGYTYIEEGNIITIVSNA 147

Query: 135 NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS------------K 182
           +++ E V+  V +    R          L +T           ++S             +
Sbjct: 148 SMQQEPVTTEVFIVNYARAADIMPTINSLIDTAAGGKIVVDARSNSLVITERPSRMNRIR 207

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            ++  L+    DQV ++    EV    ++ IG   S   S          + GG   S  
Sbjct: 208 PIIEQLD-RATDQVMIESKFVEVTDGDIRNIGVNWSSLKSYKVGVGPDPENEGGVVGSFN 266

Query: 243 GDFS 246
               
Sbjct: 267 RTAG 270


>gi|217425412|ref|ZP_03456906.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391663|gb|EEC31691.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 588

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 96/263 (36%), Gaps = 27/263 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R    ++   E     +P ++ P
Sbjct: 564 RYHSDSQNHMERVFLLSPRIIDP 586


>gi|254254350|ref|ZP_04947667.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124898995|gb|EAY70838.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 702

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 75/489 (15%), Positives = 150/489 (30%), Gaps = 69/489 (14%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
             ++ +    +   +         +    ++V V  P  A ++        LFGK  G  
Sbjct: 186 PAANGQHADIRAFRLKYGWASDFTINRSGKEVTV--PGVATILRR------LFGKGGGTT 237

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVR-TIQD 156
            +      G+    + +     IA   +                 DT    G    +   
Sbjct: 238 AMPSSTPLGQAARQVKLGSGLTIAVPRLDFPDISGGPR-SGGYSGDTAAGGGFSPFSNAG 296

Query: 157 SQRAVELSETFLSQSGRNQYANSSS---KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
                ++       +   +    +    + ++N L+      V + VTI ++  D L  +
Sbjct: 297 GDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDER-PRIVEINVTIIDINEDSLDSL 355

Query: 214 GFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF--------- 254
           G    +           G +     +     G   ++ G   S  G    F         
Sbjct: 356 GIDWRLHTTHGDVQIGNGQNPLSGNTQYNGSGNPPLTFGIGTSETGQTGAFMPTGIALTA 415

Query: 255 --------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                      T ++AL +    +  ++P + A+    A   +  Q   +        +S
Sbjct: 416 SIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SS 473

Query: 307 VTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVR 354
           + +   G  +  TP ++                + + I  +    V G    ++P  + R
Sbjct: 474 LYSVTTGTSIKVTPMIVDDAARNAAAAAGGPQSVMMSIDIQDGNIVPGQAVSNVPVIQQR 533

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T   +  G ++++AG   D+++  K G+P LS IP++G LF+ +  +    E F   
Sbjct: 534 NIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLL 593

Query: 415 TPFLVK----------PVAMRDLSRPDDH----YSVEDDAKAFFFNRVNKIYGPKEASEV 460
           TP +V           PV     +  D +    Y   D+  A              A+  
Sbjct: 594 TPRVVTNASMYAPDGSPVNPGADAPADPNALSMYRPPDNDIAVPLTPKPLPGTKFRAARA 653

Query: 461 EGQNYKGAI 469
            G    G  
Sbjct: 654 AGTGRCGRA 662


>gi|257453318|ref|ZP_05618617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|317059850|ref|ZP_07924335.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
 gi|313685526|gb|EFS22361.1| general secretion pathway protein D [Fusobacterium sp. 3_1_5R]
          Length = 435

 Score =  137 bits (344), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 67/435 (15%), Positives = 139/435 (31%), Gaps = 62/435 (14%)

Query: 7   TFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV------IIL 60
             F ++ +F         +LP   E +   +     E+     I I +++       +  
Sbjct: 30  ILFALICLFTLEEVCYAKELPKDIEMSDTTLREVLDELEGCLGIKITVDESPKDPLNLFF 89

Query: 61  QVPVDVQDVLVSDPTKAD--VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIER 118
           Q    +++VL       +  V   S     L    +            +++     L   
Sbjct: 90  QEGQSIEEVLDMLGEITNKKVKKISNHEFLLEEVQI----------QKEEISKEYHLHYL 139

Query: 119 DIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
               +   L+    D  I                 +    + + ++E         +   
Sbjct: 140 RSKEIYDALKDLFPDIKI---------------ANLDSRNQVIVVAE---------EKKI 175

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
               K+M  ++I G+ QV +   I ++ +D+  ++GF       S   +K   A  G + 
Sbjct: 176 HEIDKLMEHMDIEGK-QVKVHSQILDISKDLFHELGFDWLYEKPSQQKNKFSVAVLGEES 234

Query: 239 VSEGG-------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           V   G       +   +      +    L  LE    ++  + P++    G    F    
Sbjct: 235 VGNSGPVLGSKWNLIRQFSNATEALGLSLKLLEARQDLKITSSPSILIAHGNKGEFKITE 294

Query: 292 QHLYKTVSSSTGATSVT----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-- 345
           + +           S +      + G++L   P +     + L I  E+S+         
Sbjct: 295 EVIVGEKKEKKKGESTSVEPIFKEAGLILKVIPYIHQDNSVTLDISLELSDFRYRQTNHK 354

Query: 346 ------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                     S   R   T + + +   I++ GL +   +  +  +P LS IP LG LF+
Sbjct: 355 KDWNFNSQGGSKIGRSLSTRIHVKNKEMILIGGLSRFTRRNTENKVPFLSDIPGLGYLFK 414

Query: 400 NSRFNREETEIFIAA 414
           +      ET+++I  
Sbjct: 415 SESKKDAETDMYIKI 429


>gi|238897391|ref|YP_002923068.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229465146|gb|ACQ66920.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 496

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 99/308 (32%), Gaps = 34/308 (11%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNLLNIA---- 191
           +     V L G+V  ++D      ++        +         S+    N L +     
Sbjct: 193 QYRDQKVTLPGLVSVLRDMNSQNTIAIGENKTSGKDQSLGLPLFSADPRQNALIVRDRVV 252

Query: 192 --------------GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                            ++ + V I +V    + Q+G     + S  G   SF   F   
Sbjct: 253 NMPIYASLVKQLDVRPIEIEISVAIIDVDASDINQLGINWEASASLGGGKVSFNKGFISS 312

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                        +    F   ++ALE+ +  R L+ P++  ++   A          K 
Sbjct: 313 DDGG------FSTVVGNDFMVRINALEQHSKARVLSRPSIVTLNNIQAVLDKNVTFYTKL 366

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYR 352
                    + +   G ++  TP ++         + L IQ     P I      +P   
Sbjct: 367 --QGDKVAKLDSRTTGTLMQVTPRMIKDKGKEDVLLNLDIQDGQQRPSINNTTEILPQID 424

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +  T   L  G  ++L G ++D  +  K  IPLL  IP++G LFR+S           
Sbjct: 425 NSQITTQAVLKPGQNLLLGGFIQDSQKASKHKIPLLGDIPLIGGLFRSSSKQSSSVVRLF 484

Query: 413 AATPFLVK 420
                 VK
Sbjct: 485 LIKAVPVK 492


>gi|117924235|ref|YP_864852.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
 gi|117607991|gb|ABK43446.1| pilus (MSHA type) biogenesis protein MshL [Magnetococcus sp. MC-1]
          Length = 574

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/272 (19%), Positives = 100/272 (36%), Gaps = 39/272 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKF 238
           K+++        QV ++  + E+  +   + G        S     G S ++    G   
Sbjct: 299 KLVDQFKEVIGRQVLIETRVMEITLNETYRTGVDWWAFKGSIAAMMGQSGTYTGRIGSTN 358

Query: 239 VSEGGDFSVK---------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                 F +                 V+   +   ++  L++   ++ L+ PT+ A  GQ
Sbjct: 359 ALSSNTFGLADISYPTTTTAATGLGLVISGANGAAIVDLLKQFGDVQVLSNPTIRARHGQ 418

Query: 284 SASFTSGGQHLYKTVSS-----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            +  + G  + Y + S            +     V T   G+++  TP +   GR+ + +
Sbjct: 419 PSMISVGTSNTYVSESEITTTGTGTTATTQADVVVNTVFDGLMIGVTPFIKEDGRVVMTV 478

Query: 333 QTEVSEPV---------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
               S+            G N   +P   +++  T +E  SG  + L GL+  +    K 
Sbjct: 479 HPIKSDVTASSLDLVSVGGTNQVALPEVELKEMSTILETHSGDLVFLGGLIDKEKSATKT 538

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           G+PLL  IP+LG LF     + +  E+ I   
Sbjct: 539 GMPLLGDIPLLGRLFSTDSSSDKTREMIIMLR 570


>gi|237804923|ref|YP_002889077.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231273223|emb|CAX10136.1| general secretion pathway protein D [Chlamydia trachomatis
           B/TZ1A828/OT]
          Length = 760

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 59/378 (15%), Positives = 126/378 (33%), Gaps = 33/378 (8%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD--SQRAVELSETFLSQSGRN 174
            +++A L   +    ++         DT V+     +  +  +        + + +    
Sbjct: 373 PQELAALLSQVHDIFSNGAFGASSSCDTGVVSSKAGSSSNGLAVHIDTSLGSSVKEGSAK 432

Query: 175 QYANSSSKKVMNLLNIAGE-----------------DQVTLKVTIAEVRRDILKQIGFQH 217
             +  +  K   L+ +  +                   V ++V + E +    ++ G   
Sbjct: 433 YGSFIADSKTGTLIMVIEKEALPKIKMLLKKLDVPKKMVRIEVLLFERKLSNQRKSGLNL 492

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR----FSFETVLHALERATAIRTLA 273
              G       + A  +     + GG               S++     L     +R  A
Sbjct: 493 LRLGEEVCKQGTQAVSW-----ASGGILEFLFKGGAKGIVPSYDFAYQFLMAQEDVRINA 547

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGL 330
            P++  ++   A      +     VSS           YG+++   P +      G+  +
Sbjct: 548 SPSVVTMNQTPARIAIVEEM-SIVVSSDKDKAQYNRAQYGIMIKILPVINIGEEDGKSFI 606

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            ++T+++    G N  D P    R     V +  G T+++ GL  +     ++GIP L +
Sbjct: 607 TLETDITFDSTGRNHADRPDVTRRNITNKVRIQDGETVIIGGLRCNQTMDSRDGIPFLGE 666

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +P +G LF     +  +TE+F+  TP ++  P    +        +   +   F    V 
Sbjct: 667 LPGIGKLFGMGSASDSQTEMFMFITPKILDNPSETEEKLECAFLAARPGENDDFLRALVA 726

Query: 450 KIYGPKEASEVEGQNYKG 467
                K+A E +     G
Sbjct: 727 GQQAAKQAIERKESTVWG 744


>gi|222100424|ref|YP_002534992.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
 gi|221572814|gb|ACM23626.1| General secretion pathway protein D [Thermotoga neapolitana DSM
           4359]
          Length = 387

 Score =  136 bits (343), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 48/237 (20%), Positives = 95/237 (40%), Gaps = 7/237 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  ++I    QV + V + EV +D   ++G         SG   +         V+ 
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEVSKDYSNELGLNSLDYSFGSGQEFNENWSATLGLVTG 212

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             +               L  LE     +  A+P +   SG+ AS    G+     + + 
Sbjct: 213 LINVQTDVFG---QILAQLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLQAE 268

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              + + + D GV +   P V+    + L +  +VS            + +  +  TT+ 
Sbjct: 269 GAVSRIESIDVGVSIDIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L +G T+V++G   +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 327 LKNGQTVVISGATIEDNAQTSSGVPILNKIPLIRYLFGGTMKKDSQKELYIFIKAEI 383


>gi|308125791|ref|ZP_05777362.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
 gi|308114494|gb|EFO52034.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus K5030]
          Length = 559

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +    F V  +      +  L AL++ +    ++ P L   + + 
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
           A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V+ 
Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S 
Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 540

Query: 403 FNREETEIFIAATPFLV 419
            N  ++E+ I  TP +V
Sbjct: 541 ENVGKSELLIFVTPKVV 557


>gi|171320148|ref|ZP_02909212.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094623|gb|EDT39673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 615

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 96/256 (37%), Gaps = 30/256 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG----------------------PSKSF 230
              + ++  I ++    LKQ+G       S                          S + 
Sbjct: 363 PRLIEIEARIIQIDEGALKQLGVDWRAHNSHIDLQTGTGLTSQNSYANGSLNPTFGSITL 422

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +      +     S+  VL          ++ALE +   RT A P +T +    A   
Sbjct: 423 PGNDSVGLPASPLGLSLTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMD 482

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345
           +  Q   +    ++    + +   GV L   P V+  G   +I L ++  V   +     
Sbjct: 483 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTV 539

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++P     + +T   +  G  +++AG   D     + GIP+LSK+P++GALFR++    
Sbjct: 540 DNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSGIPVLSKLPLVGALFRSTDRQD 599

Query: 406 EETEIFIAATPFLVKP 421
             +E     TP +++P
Sbjct: 600 GHSERLFLVTPRVIEP 615


>gi|62185517|ref|YP_220302.1| general secretion pathway protein D [Chlamydophila abortus S26/3]
 gi|62148584|emb|CAH64356.1| probable general secretion pathway protein D [Chlamydophila abortus
           S26/3]
          Length = 753

 Score =  136 bits (343), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 114/297 (38%), Gaps = 10/297 (3%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           S I ++  S   V  G V+        +  S+T        + A    K ++  L++  +
Sbjct: 407 STISIDTASVGSVKEGSVKY----GNFIADSKTGTLIMVVEKEALPRIKMLLKKLDVP-K 461

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V ++V + E +    ++ G      G       S    +    + E       G    
Sbjct: 462 KMVRIEVLLFERKLSNQRKAGLNLLRLGEEVCKKTSSTISWTSSGILEFLFKGNTGSSVV 521

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             ++     L     +R  A P++  ++   A      +     VS+           YG
Sbjct: 522 PGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQYG 580

Query: 314 VVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           +++   P +      G+  + ++T+++    G NA + P    R     V +P G T+++
Sbjct: 581 IMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVII 640

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
            GL        ++GIP L +IP +G LF  +     +TE+F+  TP ++  P+  ++
Sbjct: 641 GGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697


>gi|294781789|ref|ZP_06747122.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
 gi|294481899|gb|EFG29667.1| general secretion pathway protein D [Fusobacterium sp. 1_1_41FAA]
          Length = 514

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 48/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQH---SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
             QV +   I ++  ++ +++GF         S    + +            G   ++  
Sbjct: 267 PKQVKISSQILDISNNLFEELGFDWVYRQNIASEERNTLTAIILGKAGLNGVGSTLNIVR 326

Query: 250 VLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTG 303
             +  S    T L+ LE    +   + PTL   SG+   F    + +        + +  
Sbjct: 327 QFNNKSDVLSTGLNLLESTNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKTTRENKNDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            T     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 HTEPVFKEAGLIMKVKPFIKDDDYIVLEISLELSDFKFKRNVLNIKDVNSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI++ GL K   Q ++  IP+L  IPI+   F+N+   RE ++++
Sbjct: 447 VGRALTTKVRVKNGDTILIGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKRENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|315178926|gb|ADT85840.1| fimbrial assembly protein [Vibrio furnissii NCTC 11218]
          Length = 557

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 66/369 (17%), Positives = 128/369 (34%), Gaps = 44/369 (11%)

Query: 82  HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMV 141
                + +  K         +    +Q L    + E         ++   A ++   +M+
Sbjct: 200 VDGNVILVAPKEE-------LDRREQQQLEKARMAEELGDLQSEIIKINFAKASDIAQMI 252

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVT 201
                  G V  + +         T               + ++  L+I  + QV ++  
Sbjct: 253 GG----DGAVNMLSERGSISIDERTNALLLRELPDNIHVIRDIVASLDIPVK-QVQIEAR 307

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFA-----------------------------A 232
           I  V    L ++G +   + ++   +   +                              
Sbjct: 308 IVTVNEGDLDELGVRWGFSSTNGSTTTGGSIESNLGAIGLYDGSSDSGDGAAIDDFLNVN 367

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L A++R +    ++ P L   + Q A    G +
Sbjct: 368 LAATSANASSIAFQVAKLGADTLLDLELSAMQRESKAEIISSPRLITTNKQPAYIEQGTE 427

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
             Y    SS+GATSV      + L  TP +    R+ L +      P  V+    G+  +
Sbjct: 428 IPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEVVKTGTGEAVA 486

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  +    + +PLL  +P+LGALFR S     ++E+
Sbjct: 487 INTQRIGTQVLVNNGETVVLGGIFQHSVTSSVDKVPLLGDLPLLGALFRRSYEQMGKSEL 546

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 547 LIFVTPKVV 555


>gi|282896843|ref|ZP_06304849.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
 gi|281198252|gb|EFA73142.1| pilQ(type II and III secretion system protein) [Raphidiopsis
           brookii D9]
          Length = 522

 Score =  136 bits (342), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 53/245 (21%), Positives = 102/245 (41%), Gaps = 19/245 (7%)

Query: 192 GEDQVTLKVTIAEVRR------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
              QV + + I +V        +     G   +   +  G +     +      S     
Sbjct: 276 RRRQVKVNLKIIDVNLWGIENYNSSFSFGIGDNFLSNDQGIATFNFGNQRPFTGSGSVPT 335

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-------V 298
           S+ G+ +R  F   L A       + L +P+L    GQ+A+     Q + +         
Sbjct: 336 SLVGLPNR--FLAFLQAQVTNGNAKILTDPSLIVQEGQNANVKLTQQVIGQEKITRIDTP 393

Query: 299 SSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGD--MPSYRVRK 355
            +S     +   + G+ ++     +   G I L +   V  PV   + G   +     R 
Sbjct: 394 GNSREERIIEKEEVGLTVNVRVERIDDNGFISLSVAPVVKSPVNSESTGAGKVTLIAERS 453

Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            ++  + L  G T++L+G+++D  + +   +PLLS IP+LGALFR+++ +RE  E+ +  
Sbjct: 454 LNSGLIRLRDGQTLLLSGIIQDQDRSVVTKVPLLSDIPLLGALFRSTKKDRERREVIVLL 513

Query: 415 TPFLV 419
           TP ++
Sbjct: 514 TPRII 518


>gi|281356804|ref|ZP_06243295.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316931|gb|EFB00954.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 836

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/314 (18%), Positives = 104/314 (33%), Gaps = 74/314 (23%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--------------- 226
             V++ L    E  V +     E+ +D LK++ F + +T +                   
Sbjct: 501 DTVIHELLDQQEPMVQILCKFIEISQDDLKELAFNYQLTVNGGAEANVMENGKYPRDVKF 560

Query: 227 --------------SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                         + S      G          V    D  +    L AL +A ++  L
Sbjct: 561 GPNSNELLRYYRDETNSSGDSSTGNPTYNSTFSYVWQNADGTAIVANLFALNQADSMDVL 620

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVVLHFTP 320
             P +T + GQ A      +  +                S  G+   T++  G+     P
Sbjct: 621 GAPRVTTLPGQPAHIEMVTERYFPEDWEIVDLPNNNTGGSGDGSNEGTSYWRGISADPQP 680

Query: 321 TVLSPGR---IGLRIQTEV------------------------------SEPVIGVNAGD 347
              S      I   IQ E+                              S+         
Sbjct: 681 NFESEPTKLGIVFDIQPEIDKERRTITAHVLLPVQTLSGWMIFDARTYDSDGNTDGEYYQ 740

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           MP +  R  +T + +  G T+VL G+ +D ++ + + IP+L  +PI+G LF++   + ++
Sbjct: 741 MPIFDKRSIETDITVYDGETVVLGGVAQDKVEIVNDKIPVLGDLPIVGRLFQSKYTDSQK 800

Query: 408 TEIFIAATPFLVKP 421
             + +  T  LVKP
Sbjct: 801 RNLLVFLTCRLVKP 814


>gi|171316796|ref|ZP_02906007.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171098054|gb|EDT42870.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 598

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 95/272 (34%), Gaps = 8/272 (2%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
           M  T +          T                 +++ L++     + ++  + EV    
Sbjct: 331 MAPTEERLPVIQADPGTNSVLVRDVPQRIDQYASLVSQLDVR-RQLIEIEAHVIEVDETA 389

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L+QIG          G      A FG    S G   +             ++ L+     
Sbjct: 390 LRQIGVNWGARSKHVGLQTGGGAPFGA---STGNTLTAVVGDSGRYLMGRINLLQLENKA 446

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-TVLSPGRI 328
           R  A P +  +    A   +  +   +    ++G   + +   G+ L   P  +   GR 
Sbjct: 447 RLDASPKVATLDNVEAIMDNRSRFFVRVSGHTSGQ--LYSVSTGISLRVLPMVMNENGRQ 504

Query: 329 GLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
            +++   + +  I      ++P        T   +    ++++AG   +   +   G+P 
Sbjct: 505 YIKLAVNIDDGQITNRTVDNIPIVNSSSIRTQAVIGKDESLLIAGYRVEGRSEGTFGVPG 564

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           LSKIP++GALFR S  +  + +     TP ++
Sbjct: 565 LSKIPVVGALFRQSESSARKMDRIFLLTPRII 596


>gi|28899520|ref|NP_799125.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|28807756|dbj|BAC61009.1| fimbrial assembly protein [Vibrio parahaemolyticus RIMD 2210633]
          Length = 578

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 60/317 (18%), Positives = 119/317 (37%), Gaps = 36/317 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 262 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 320

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 321 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 380

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +    F V  +      +  L AL++ +    ++ P L   + + 
Sbjct: 381 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 440

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
           A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V+ 
Sbjct: 441 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 499

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
              G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S 
Sbjct: 500 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSY 559

Query: 403 FNREETEIFIAATPFLV 419
            N  ++E+ I  TP +V
Sbjct: 560 ENVGKSELLIFVTPKVV 576


>gi|171909907|ref|ZP_02925377.1| Type II secretory pathway component, protein D [Verrucomicrobium
           spinosum DSM 4136]
          Length = 665

 Score =  136 bits (342), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 58/277 (20%), Positives = 96/277 (34%), Gaps = 41/277 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP------------SKSFAADFGGKFVSEG 242
           Q+ ++V   E  RD  K+ G   S T   SG             +     +      +EG
Sbjct: 272 QIAIEVKFFETSRDPAKEFGVDWSGTFGQSGLFRQVDSVTSDPETGQQTVNTTNIAQTEG 331

Query: 243 G--------------------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           G                          VL        L A+ +    RT++ P +   + 
Sbjct: 332 GYRADLSNLLSLGNLNEAKAFLAPSTAVLSAQDVNIKLRAMLKDQETRTVSYPRMVTTNN 391

Query: 283 QSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +     S                + ST  +S++    G V++  P  +   +I L +   
Sbjct: 392 REVVIRSVVNQPVLGGSASTSLGTGSTTTSSISYLPIGTVINILPKRMMDDKINLNLAIT 451

Query: 336 VSEPVIG--VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           VS  +    +     P    R     VEL +G T+ + GL +   Q+ ++GIP+L KIPI
Sbjct: 452 VSSIIGTEVIQGNPYPVASSRVYSAPVELNNGYTVAVGGLDEAREQEGEQGIPVLGKIPI 511

Query: 394 LGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
           LG  F+     +    + I  TP L+         +P
Sbjct: 512 LGYAFKTKGKAKNHKNLMIFITPSLIDVRDGGLPEKP 548


>gi|205352890|ref|YP_002226691.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205272671|emb|CAR37581.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|309243418|gb|ADO51994.1| SsaC [Salmonella enterica subsp. enterica serovar Gallinarum]
 gi|326627962|gb|EGE34305.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 497

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 45/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + S     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYASNMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 DLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|148270748|ref|YP_001245208.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
 gi|147736292|gb|ABQ47632.1| type II and III secretion system protein [Thermotoga petrophila
           RKU-1]
          Length = 387

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/237 (21%), Positives = 100/237 (42%), Gaps = 7/237 (2%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           ++ +  ++I    QV + V + E+ RD   ++G        S G  + F  ++       
Sbjct: 154 EEDLKKIDIPIP-QVKISVIVTEISRDYSNELGLN--SLDYSFGSGQEFNENWTATLGLV 210

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
            G  +V+  +        L  LE     +  A+P +   SG+ AS    G+     + + 
Sbjct: 211 TGILNVQTDV-FGQILAKLKLLEEDQKAKITADPWIIVKSGEKASL-FLGERQVVLLEAE 268

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
              + + + D GV +   P V+    + L +  +VS            + +  +  TT+ 
Sbjct: 269 GAVSRIESIDVGVSIEIQPRVMDKEELELTLSPKVSHFAGEK--LGTFAVKQNELSTTLF 326

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L +G T+V++G   +D  Q   G+P+L+KIP++  LF  +     + E++I     +
Sbjct: 327 LKNGQTVVISGATIEDSAQTGSGVPILNKIPLIRYLFGGTTKKDSQKELYIFIKAEI 383


>gi|269138220|ref|YP_003294920.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|55981981|gb|AAV69411.1| EsaC [Edwardsiella tarda]
 gi|61743031|gb|AAX55251.1| EsaC [Edwardsiella tarda]
 gi|267983880|gb|ACY83709.1| Type II secretory pathway, component PulD like protein
           [Edwardsiella tarda EIB202]
 gi|304558263|gb|ADM40927.1| EsaC [Edwardsiella tarda FL6-60]
          Length = 494

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/362 (17%), Positives = 129/362 (35%), Gaps = 36/362 (9%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            V S   + + G     + V  +     Q+   D+ +E++   + +   ++   S+    
Sbjct: 137 QVASANALQVNGVPACLSQVTTLAK---QLDEQDLNLEQNRETVAVFPLKYANASDTSYA 193

Query: 140 MVSDTVVLHGMVRTIQDSQRAVEL----SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
             + +VV+ G+V  +++  +   +    S++    S  +     S+    N + I    Q
Sbjct: 194 YRNQSVVVPGLVSVLREMAQGHAMPLPDSKSGTPPSNSSGLPTFSADLRQNAVLIRDRKQ 253

Query: 196 ------------------VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                             + + VTI +V    + ++G   S +    G   SF    G  
Sbjct: 254 NMALYRQLIQQLDKRPTLIEISVTIIDVDAGDINELGIDWSASARIGGGQVSFNNSGGLN 313

Query: 238 FVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             S     +     +  SF   L ALE+ +  + ++ P++  +    A          K 
Sbjct: 314 ADSFSSLIA-----NSGSFMVRLSALEQQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKL 368

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVL---SPGRIGLRIQTEV-SEPVIGVNAGDMPSYRV 353
            S       +     G ++  TP ++      +I L +  E   +      A  +P  + 
Sbjct: 369 RSEKNPK--LEAITAGALMRVTPRLIRERGGNKILLILNIEDGRQGAPLSQAESLPQVQN 426

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  T   L  G  ++L G ++++  Q    IPLL  IP++G LFR++            
Sbjct: 427 AEIATQATLNLGQALLLGGFVQNENTQGVRKIPLLGDIPLIGGLFRSTDSKVHSVVRLFL 486

Query: 414 AT 415
             
Sbjct: 487 IK 488


>gi|207857100|ref|YP_002243751.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|206708903|emb|CAR33233.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 497

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|167842291|ref|ZP_02468975.1| type III secretion system EscC protein [Burkholderia thailandensis
           MSMB43]
          Length = 508

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 49/229 (21%), Positives = 83/229 (36%), Gaps = 11/229 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                V + V I +V    L  +G   S +    G S SF +       S     S    
Sbjct: 280 RKPKLVEISVAIIDVNAQDLSMLGVDWSASARIGGGSVSFNSGGEPDSGSFSTVVS---- 335

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +   F   L ALE+    + L+ P++  +    A          K   S+     + + 
Sbjct: 336 -NTGQFMVRLSALEQNAKAQILSRPSVVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 392

Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGG 366
             G +L  TP V+   G+  + +   V +            +P     +  T   L  G 
Sbjct: 393 STGSLLRVTPRVIGDPGKQEIMLTLMVQDGRQTGALSKQEPLPQTLNSEIATHALLKEGQ 452

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++L G ++D++ + +  IPLL  IP+LG LF+    N+  T       
Sbjct: 453 ALLLGGFVQDELSEGERKIPLLGDIPLLGNLFKMRHKNQRHTVRLFLIK 501


>gi|302877407|ref|YP_003845971.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
 gi|302580196|gb|ADL54207.1| type IV pilus secretin PilQ [Gallionella capsiferriformans ES-2]
          Length = 705

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/272 (17%), Positives = 94/272 (34%), Gaps = 14/272 (5%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           A+    T               +K++  +++    QV ++           + +G +   
Sbjct: 431 AMADVRTNTLFVKDTPSRLEEVRKLLKQIDVPVR-QVMIEARFVSAGDSFARSLGGKLGY 489

Query: 220 TG-----SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------FETVLHALERATA 268
                  +    +            +         +L  F+          L+A E    
Sbjct: 490 ASPANAANGGAATTGAINGVNVNLPNSLAGTGGGLLLSLFNPAATKVLTLELNASETDGI 549

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI 328
            + +A P +       AS  SG +  Y    +     +       + L  TP +     I
Sbjct: 550 TKNIASPRVVTADKTKASIKSGVEIPYTIAGTVGSPPTTAFKTAALSLDVTPRITPDNNI 609

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            + +    S+  +G     +PS   +   T V + +GGT+V+ G+   D+      +PLL
Sbjct: 610 NMTLVA--SQDTVGALYSGVPSINSKMVTTEVLIENGGTVVVGGVFTQDVADTVNKVPLL 667

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             IP+LG +F+N      + E+ I  TP +++
Sbjct: 668 GDIPVLGWMFKNKVKTDAKNELLIFITPKIMQ 699


>gi|83591449|ref|YP_425201.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
 gi|83574363|gb|ABC20914.1| type II and III secretion system protein [Rhodospirillum rubrum
           ATCC 11170]
          Length = 547

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 100/266 (37%), Gaps = 31/266 (11%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDFSVKG 249
           QV ++  I EV      + G                P  +          +       + 
Sbjct: 271 QVLIEAKIVEVTLKDQYRGGIDWKVLTDGGEFLLDIPGAAGVVAPPLTDAAATLSLGTRA 330

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------- 299
            L       ++  ++   A+RTL+ P LT ++ Q+A        +Y  V           
Sbjct: 331 TLGPVELSALVQFIKTFGAVRTLSSPRLTVMNNQTAVLKVAENEVYFVVDVDTVTSDGVT 390

Query: 300 SSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIGVNAGD----------- 347
            +T ++ + T   G+V+   P      GR+ L ++  +S     V               
Sbjct: 391 QTTYSSEINTVPIGLVMTVQPSVEPGGGRVTLGLRPTISRIADRVADPAVSLQNLSVQSL 450

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P   VR+ D+ V + +G  +V+ GL+++ + + +EG+P L  +P++G  FR+   + + 
Sbjct: 451 IPVVEVRELDSVVTIDNGAVVVMGGLMQERMGRDEEGVPGLGDVPLIGRAFRHDSADTDV 510

Query: 408 TEIFIAATPFLVKPVAMRDLSRPDDH 433
            E+ +     ++        S P D 
Sbjct: 511 VELVVLLRATVI----GGAHSHPADR 532


>gi|329943286|ref|ZP_08292060.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|332287864|ref|YP_004422765.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|313848436|emb|CBY17440.1| probable general secretion pathway protein D [Chlamydophila
           psittaci RD1]
 gi|325507393|gb|ADZ19031.1| putative general secretion pathway protein D [Chlamydophila
           psittaci 6BC]
 gi|328814833|gb|EGF84823.1| bacterial type II and III secretion system family protein
           [Chlamydophila psittaci Cal10]
 gi|328915126|gb|AEB55959.1| general secretion pathway protein D [Chlamydophila psittaci 6BC]
          Length = 753

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 94/238 (39%), Gaps = 5/238 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G       S A  +    + E       G   
Sbjct: 461 KKMVRIEVLLFERKLSSQRKAGLNLLRLGEEVCKKSSSAISWTSSGILEFLFKGNTGASL 520

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              ++     L     +R  A P++  ++   A      +     VS+           Y
Sbjct: 521 VPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVEEM-SIAVSADKEKAQYNRAQY 579

Query: 313 GVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           G+++   P +      G+  + ++T+++    G NA + P    R     V +P G T++
Sbjct: 580 GIMIKMLPVINVGDEDGKSYITLETDITFDTTGKNANERPDVTRRNITNKVRIPDGETVI 639

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMRD 426
           + GL        ++GIP L +IP +G LF  +     +TE+F+  TP ++  P+  ++
Sbjct: 640 IGGLRCKHASDSQDGIPFLGEIPGVGKLFGMNSTADSQTEMFVFITPKILDNPIEKKE 697


>gi|167551637|ref|ZP_02345391.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|168263775|ref|ZP_02685748.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|168463196|ref|ZP_02697127.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|194442462|ref|YP_002040647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|198244927|ref|YP_002215736.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|194401125|gb|ACF61347.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL254]
 gi|195633943|gb|EDX52295.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Newport
           str. SL317]
 gi|197939443|gb|ACH76776.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205323577|gb|EDZ11416.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA29]
 gi|205347635|gb|EDZ34266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Hadar str.
           RI_05P066]
 gi|326623484|gb|EGE29829.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Dublin str.
           3246]
          Length = 497

 Score =  136 bits (341), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|197247911|ref|YP_002146647.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
 gi|197211614|gb|ACH49011.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Agona str.
           SL483]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|16764744|ref|NP_460359.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|1498307|gb|AAC44301.1| SpiA [Salmonella enterica subsp. enterica serovar Typhimurium]
 gi|16419915|gb|AAL20318.1| secretion system apparatus protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|261246600|emb|CBG24410.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993282|gb|ACY88167.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157929|emb|CBW17424.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912379|dbj|BAJ36353.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Typhimurium
           str. T000240]
 gi|321224019|gb|EFX49082.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129666|gb|ADX17096.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988281|gb|AEF07264.1| outer membrane secretin precursor [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|161614190|ref|YP_001588155.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363554|gb|ABX67322.1| hypothetical protein SPAB_01932 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|56413635|ref|YP_150710.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362559|ref|YP_002142196.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127892|gb|AAV77398.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197094036|emb|CAR59532.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|213024547|ref|ZP_03338994.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 284

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 93/251 (37%), Gaps = 21/251 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + ++  L++A    V L + I ++ +  L+++G   S             +   G  +  
Sbjct: 13  EMLVKALDVAKRH-VELSLWIVDLNKSDLERLGTSWS------------GSITIGDKLGV 59

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
             + S    LD   F   ++ALE       ++ P L       A F +      K +   
Sbjct: 60  SLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTKLIGER 119

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRKA 356
               ++    YG ++   P   + G+I + +  E             +   +P       
Sbjct: 120 N--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTLI 177

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
            T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+          P
Sbjct: 178 STIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIEP 237

Query: 417 F-LVKPVAMRD 426
             +V P+    
Sbjct: 238 KEIVDPLTPDA 248


>gi|168233588|ref|ZP_02658646.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
 gi|168239278|ref|ZP_02664336.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|194471885|ref|ZP_03077869.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194734057|ref|YP_002114408.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|204927561|ref|ZP_03218762.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|194458249|gb|EDX47088.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194709559|gb|ACF88780.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. CVM19633]
 gi|197288005|gb|EDY27392.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|204322903|gb|EDZ08099.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Javiana
           str. GA_MM04042433]
 gi|205332374|gb|EDZ19138.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CDC 191]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|300693821|ref|YP_003749794.1| type III secretion protein [Ralstonia solanacearum PSI07]
 gi|299075858|emb|CBJ35167.1| Type III secretion protein [Ralstonia solanacearum PSI07]
          Length = 590

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 86/245 (35%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I E+    L+Q+G    +  S        +A+                        
Sbjct: 348 ISASIIEISETALEQLGVDWRLHNSRFDLQTGNSANTMLNNPGSLDSVATTAGAAAAIAA 407

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 408 TPAGGVLSAVIGGSSRYLMARISALQQTNQARITANPKVATLDNTEAVMDNRQNFYVPVA 467

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 525

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   D   +  + +P LSKIP++GALFR  +   +  +     TP
Sbjct: 526 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 585

Query: 417 FLVKP 421
            ++ P
Sbjct: 586 RVITP 590


>gi|322615120|gb|EFY12043.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315996572]
 gi|322619963|gb|EFY16836.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-1]
 gi|322622274|gb|EFY19119.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-3]
 gi|322627796|gb|EFY24586.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 495297-4]
 gi|322632859|gb|EFY29603.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-1]
 gi|322636650|gb|EFY33353.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 515920-2]
 gi|322641157|gb|EFY37799.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 531954]
 gi|322644908|gb|EFY41441.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. NC_MB110209-0054]
 gi|322650255|gb|EFY46669.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. OH_2009072675]
 gi|322655829|gb|EFY52131.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. CASC_09SCPH15965]
 gi|322660154|gb|EFY56393.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 19N]
 gi|322665279|gb|EFY61467.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 81038-01]
 gi|322669536|gb|EFY65684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MD_MDA09249507]
 gi|322673462|gb|EFY69564.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 414877]
 gi|322677390|gb|EFY73454.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 366867]
 gi|322679947|gb|EFY75986.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 413180]
 gi|322687419|gb|EFY83391.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 446600]
 gi|323193477|gb|EFZ78684.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609458-1]
 gi|323198609|gb|EFZ83710.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556150-1]
 gi|323208655|gb|EFZ93593.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 507440-20]
 gi|323211192|gb|EFZ96039.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 556152]
 gi|323217632|gb|EGA02347.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB101509-0077]
 gi|323218980|gb|EGA03490.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB102109-0047]
 gi|323223665|gb|EGA07975.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB110209-0055]
 gi|323229434|gb|EGA13557.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. MB111609-0052]
 gi|323232657|gb|EGA16753.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009083312]
 gi|323240305|gb|EGA24349.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 2009085258]
 gi|323242706|gb|EGA26727.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 315731156]
 gi|323245918|gb|EGA29906.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252482|gb|EGA36329.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255189|gb|EGA38968.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260064|gb|EGA43689.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. IA_2010008284]
 gi|323267172|gb|EGA50657.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271505|gb|EGA54926.1| outer membrane secretin SsaC [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 497

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|90410268|ref|ZP_01218284.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
 gi|90328509|gb|EAS44793.1| general secretion pathway protein D precursor [Photobacterium
           profundum 3TCK]
          Length = 406

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203
           VL    +   + Q A  +       +     + S   ++ NL+        QV +   + 
Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINAMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           + R    + IG    +    +G           K   +GG+     + D+     ++ A+
Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVSSIKESFKGGNI----IYDKGDVSALVTAI 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319
            +    + L++P L  +  +  S   G    +   + ++        +   + G+ L   
Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGSINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +++   + L I    S       A D+     R+ +T V++  G +I+L GL+ D+ +
Sbjct: 309 PHIVND-SVVLGINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + G+PLL  IP +G LFR +      +++ +     ++
Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406


>gi|308126655|ref|ZP_05911606.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
 gi|308108444|gb|EFO45984.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AQ4037]
          Length = 582

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 322

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 323 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 382

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 383 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           + A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V
Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 501

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR 
Sbjct: 502 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561

Query: 401 SRFNREETEIFIAATPFLV 419
           S  N  ++E+ I  TP +V
Sbjct: 562 SYENVGKSELLIFVTPKVV 580


>gi|328472347|gb|EGF43217.1| fimbrial assembly protein [Vibrio parahaemolyticus 10329]
          Length = 570

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 119/319 (37%), Gaps = 38/319 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 252 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 310

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 311 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 370

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 371 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 430

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           + A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V
Sbjct: 431 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKV 489

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR 
Sbjct: 490 VKTGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 549

Query: 401 SRFNREETEIFIAATPFLV 419
           S  N  ++E+ I  TP +V
Sbjct: 550 SYENVGKSELLIFVTPKVV 568


>gi|16760517|ref|NP_456134.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141723|ref|NP_805065.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|168822263|ref|ZP_02834263.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|213051564|ref|ZP_03344442.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213428550|ref|ZP_03361300.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213647233|ref|ZP_03377286.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213854968|ref|ZP_03383208.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|238913201|ref|ZP_04657038.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
 gi|25511812|pir||AB0700 probable outer membrane secretory protein spiA [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502813|emb|CAD01971.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137351|gb|AAO68914.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|205341330|gb|EDZ28094.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. HI_N05-537]
 gi|320086125|emb|CBY95899.1| Yop proteins translocation protein C Flags: Precursor [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
          Length = 497

 Score =  135 bits (340), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|197264837|ref|ZP_03164911.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
 gi|197243092|gb|EDY25712.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Saintpaul
           str. SARA23]
          Length = 497

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|161503511|ref|YP_001570623.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864858|gb|ABX21481.1| hypothetical protein SARI_01587 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 484

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 43/230 (18%), Positives = 86/230 (37%), Gaps = 10/230 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             + + V I +V    + Q+G       S  G   +F +           +     + D 
Sbjct: 254 QMIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNSGPNEGDT----NGFSTVISDT 309

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   L+ALE+++    L++P++  ++   A          K          + +   G
Sbjct: 310 SNFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTG 367

Query: 314 VVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIV 369
            +L  TP +L+     +I L +  +  +     +    +P  +  +  +   L +G +++
Sbjct: 368 SLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETNPLPEVQNSEIASQATLLAGQSLL 427

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G  +    + +  IPLL  IP+LG LFRN                 +V
Sbjct: 428 LGGFKQGKQIRSQNKIPLLGDIPVLGHLFRNDTTQVHSVIRLFLIKASVV 477


>gi|62179985|ref|YP_216402.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|168240906|ref|ZP_02665838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|194448307|ref|YP_002045398.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|200390529|ref|ZP_03217140.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|224584095|ref|YP_002637893.1| outer membrane secretory protein [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|62127618|gb|AAX65321.1| Secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|194406611|gb|ACF66830.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|199602974|gb|EDZ01520.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Virchow
           str. SL491]
 gi|205339640|gb|EDZ26404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL486]
 gi|224468622|gb|ACN46452.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714452|gb|EFZ06023.1| secretion system apparatus SsaC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 497

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 400

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 401 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 460

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 461 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 490


>gi|269302489|gb|ACZ32589.1| type II/III secretion system protein [Chlamydophila pneumoniae
           LPCoLN]
          Length = 919

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 115/316 (36%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
           ++ S        +  +V++LLN       QV ++V I +   +     G Q    G    
Sbjct: 565 VNNSIVIIGNQGNVDRVVSLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252
                    +++G +    A       + G                      F +  + +
Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
             S           +L AL++      +  P + A   Q ASF  G    Y+T ++    
Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744

Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
             T   ++   D GV L  T TV     + L+I+  +SE      +   P      A T 
Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 864 SSFEEGTRVTNKEGYR 879


>gi|84785906|gb|ABC62092.1| secretion and cellular translocation protein C [Chlamydophila
           psittaci]
          Length = 672

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/316 (18%), Positives = 108/316 (34%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           ++ S       ++  KV++LLN       QV ++V I E   +     G Q    G   G
Sbjct: 318 VNNSIVVIGNQANVDKVVSLLNGLDLPPKQVYIEVLILETSLEKSWDFGVQWVALGDEQG 377

Query: 226 PSKSFAADFGGKFVSE---------------------------------GGDFSVKGVLD 252
                +       ++                                     F +  + +
Sbjct: 378 KVAYASGLLSNTGLANPAKSTVPPAKPSTGDIPLPTPGQLAGISDMMYASSAFGLGIIGN 437

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----S 299
             S           +L AL++      +  P + A   Q ASF  G    ++T       
Sbjct: 438 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTIPFQTTSTIIQE 497

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
           + T   ++   D GV L    TV     + L+I+  +SE          P      A T 
Sbjct: 498 TGTVTQNIEYEDIGVNLVVASTVAPNNVVTLQIEQTISELHSAQGTLT-PVTDKTYAATR 556

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++    +   P ++
Sbjct: 557 LQVPDGCFLVMSGHIRDKTTKIVTGVPLLNSIPLIRGLFSRTIDQRQKRNTMMFIKPKVI 616

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 617 SSFEEGTKLTNKEGYR 632


>gi|330443957|ref|YP_004376943.1| type II and III secretion system protein [Chlamydophila pecorum
           E58]
 gi|328807067|gb|AEB41240.1| Bacterial type II and III secretion system protein [Chlamydophila
           pecorum E58]
          Length = 751

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 50/258 (19%), Positives = 99/258 (38%), Gaps = 9/258 (3%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           +  V ++V + E +    ++ G      G      KS          +   +F +KG   
Sbjct: 457 KKMVRIEVLLFERKLSHDRKSGLNLLRLGEEI-SKKSLTPTVSWGSGAGILEFLLKGATG 515

Query: 253 ---RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
                 ++     L     +R  A P++  ++   A      +     VS+         
Sbjct: 516 CSIVPGYDLAYQFLMAQEDVRINASPSVVTMNQTPARIAIVDEM-SIAVSAENDKALYNR 574

Query: 310 HDYGVVLHFTPTVL---SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             YG+++   P +      G+  + ++T+++    G N  D P    R     V +  G 
Sbjct: 575 AQYGIMIKMLPVINVGEEDGKSYITLETDITFDTTGKNMDDRPEVTRRNITNKVRIADGE 634

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK-PVAMR 425
           ++++ GL    +   +EGIP L +IP LG LF  +  +   TE+F+  TP ++  P+  +
Sbjct: 635 SVIIGGLRCKHMSDSQEGIPFLGEIPGLGKLFSMNAVSDSLTEMFVFITPKILDNPMEKQ 694

Query: 426 DLSRPDDHYSVEDDAKAF 443
           +        S   + + F
Sbjct: 695 ERYEEALLASRPGEDEEF 712


>gi|149200051|ref|ZP_01877076.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
 gi|149136809|gb|EDM25237.1| Peptidase M41, FtsH [Lentisphaera araneosa HTCC2155]
          Length = 825

 Score =  135 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 110/333 (33%), Gaps = 65/333 (19%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
           ++             N   + ++N LN  G  QV ++  + ++  + ++++GF    TG 
Sbjct: 490 VASVNRLVVTNTVNNNQLIQDIINNLN-TGAAQVNVEAKVVDITWNAMQELGFLWRWTGP 548

Query: 223 SSGPSKSFAADFGGKFVSEGGD-----------------------FSVKGVLDRFSFETV 259
            +            +  +                            +   +      + +
Sbjct: 549 RTPNHTLTGDRIFAQSNTPASGGERFDNNIRGINEVVTSQEGPVQLAADLIFGNQELQMM 608

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----------GATSVT 308
           + AL+++     L  P +   SG++A         +                    T   
Sbjct: 609 IRALDQSDTNEILMAPNVLTKSGETAVIRVVTSQQFVEEWEEGEFSNSTEIVPSTPTFGE 668

Query: 309 THDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIGVNAGD-------------------- 347
             D G VL  TP V      I + +  E  E +      +                    
Sbjct: 669 EKDIGFVLSVTPEVDPNNTVITMEVNPEFIEFLGYDTDLNTSTELQLFDINGSPFTYQAE 728

Query: 348 ----MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
               MP + VR  +T V+L  G T  L GL+++++  + + IP +S IP +G LF+N   
Sbjct: 729 FIYSMPIFEVRSIETRVKLWDGQTFTLGGLIRENVWTVDDSIPYISAIPFVGRLFQNKGE 788

Query: 404 NREETEIFIAATPFLVK----PVAMRDLS-RPD 431
             E+  + +  T  L+     P+ +  +   PD
Sbjct: 789 ASEKRSLLMFITARLITESGLPLRINQVPGLPD 821


>gi|238918877|ref|YP_002932391.1| type III secretion outer membrane pore, YscC/HrcC family,
           [Edwardsiella ictaluri 93-146]
 gi|84663086|gb|ABC60068.1| EsaC [Edwardsiella ictaluri 93-146]
 gi|238868445|gb|ACR68156.1| type III secretion outer membrane pore, YscC/HrcC family, putative
           [Edwardsiella ictaluri 93-146]
          Length = 494

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 60/335 (17%), Positives = 119/335 (35%), Gaps = 33/335 (9%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVEL--- 163
           KQ+   D+  E++   +E+   ++   S+      + +VV+ G+V  +++  +   +   
Sbjct: 161 KQLDEQDLNQEQNRETVEVFPLKYANASDTSYTYRNQSVVVPGLVSVLREMAQGHAMPLP 220

Query: 164 -SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ------------------VTLKVTIAE 204
            S++    S  +     S+    N + I    Q                  + + VTI +
Sbjct: 221 DSKSSTPPSNSSGLPTFSADLRQNAVLIRDRKQNMALYRQLIQRLDKRPTLIEISVTIID 280

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V    + Q+G   S +    G   SF         S     S     +  SF   L ALE
Sbjct: 281 VDAGDINQLGIDWSASARIGGGQVSFNNGGRLNSDSFSSLIS-----NSGSFMVRLSALE 335

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT--- 321
           + +  + ++ P++  +    A          K  S       +     G ++  TP    
Sbjct: 336 QQSKAKIVSRPSVVTLDNVQAVLDRSITFYTKLSSEKNPK--LEAITSGALMRVTPRLIR 393

Query: 322 VLSPGRIGLRIQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
                ++ L +  E   +         +P  +  +  T   L  G  ++L G ++++  Q
Sbjct: 394 ENGGNKVLLILNIEDGRQGAPLSQTESLPQVQNAEIATQATLNLGQALLLGGFVQNENTQ 453

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
               IPLL  +P++G LFR++  N           
Sbjct: 454 GVRKIPLLGDLPLIGGLFRSTDRNTLSVVRLFLIK 488


>gi|15618612|ref|NP_224898.1| Yop proteins translocation protein C/general secretion pathway
           protein [Chlamydophila pneumoniae CWL029]
 gi|15836234|ref|NP_300758.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|16752338|ref|NP_444596.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|33242060|ref|NP_877001.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
 gi|4377005|gb|AAD18841.1| probable Yop proteins translocation protein C/general secretion
           pathway protein [Chlamydophila pneumoniae CWL029]
 gi|6672030|dbj|BAA88652.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae]
 gi|7188983|gb|AAF37937.1| type III secretion protein SctC [Chlamydophila pneumoniae AR39]
 gi|8979074|dbj|BAA98909.1| YopC/Gen secretion protein D [Chlamydophila pneumoniae J138]
 gi|33236570|gb|AAP98658.1| outer membrane secretion protein Q [Chlamydophila pneumoniae
           TW-183]
          Length = 919

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 61/316 (19%), Positives = 114/316 (36%), Gaps = 49/316 (15%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIAEVRRDILKQIGFQHSITG---- 221
           ++ S        +  +V+ LLN       QV ++V I +   +     G Q    G    
Sbjct: 565 VNNSIVIIGNQGNVDRVIGLLNGLDLPPKQVYIEVLILDTSLEKSWDFGVQWVALGDEQS 624

Query: 222 ---------SSSGPSKSFAADFGGKFVSEGG--------------------DFSVKGVLD 252
                    +++G +    A       + G                      F +  + +
Sbjct: 625 KVAYASGLLNNTGIATPTKATVPPGTPNPGSIPLPTPGQLTGFSDMLNSSSAFGLGIIGN 684

Query: 253 RFS--------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
             S           +L AL++      +  P + A   Q ASF  G    Y+T ++    
Sbjct: 685 VLSHKGKSFLTLGGLLSALDQDGDTVIVLNPRIMAQDTQQASFFVGQTVPYQTTNTIIQE 744

Query: 301 -STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
             T   ++   D GV L  T TV     + L+I+  +SE      +   P      A T 
Sbjct: 745 TGTVTQNIDYEDIGVNLVVTSTVAPNNVVTLQIEQTISELHSASGSLT-PVTDKTYAATR 803

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++P G  +V++G ++D   ++  G+PLL+ IP++  LF  +   R++  I +   P ++
Sbjct: 804 LQIPDGCFLVMSGHIRDKTTKVVSGVPLLNSIPLIRGLFSRTIDQRQKRNIMMFIKPKVI 863

Query: 420 KPVAMRDLSRPDDHYS 435
                       + Y 
Sbjct: 864 SSFEEGTRVTNKEGYR 879


>gi|86605695|ref|YP_474458.1| type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
 gi|86554237|gb|ABC99195.1| putative type IV pilus secretin PilQ [Synechococcus sp. JA-3-3Ab]
          Length = 723

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/256 (19%), Positives = 89/256 (34%), Gaps = 28/256 (10%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGG 243
              QV +     E+  D    +G        +          FGG          V   G
Sbjct: 466 RSRQVLISARFIEINLDNNSSLGVALGSASGNFALGSGDNTVFGGTPLDQPAGSSVPNVG 525

Query: 244 DFSVKGVLDRFSFE----------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
            F   G      F             + A   +   + LA+P +   +   A+   G + 
Sbjct: 526 SFPAAGTGGSLVFNTLNRLQQSLAARIDAAIASGTAKILADPKVVVANNTGAAIVVGQEV 585

Query: 294 LYKTVSSSTGATSVTTH-----DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGD 347
           +      +  AT ++T      + GV L      +   G I L +  ++S     +   D
Sbjct: 586 ITNRRLQTDPATGISTVVFEKGNAGVNLLIQNVRIDDNGYITLNLLPQISSIGSQITLSD 645

Query: 348 MPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                    R   T    L    T+ L GL++++ +   + +PLLS+IP+LG+LFR    
Sbjct: 646 GTVISLLNQRSVGTLQTRLKDRETLFLGGLIQEEDRVSVDKVPLLSEIPLLGSLFRRQNT 705

Query: 404 NREETEIFIAATPFLV 419
               +E+ +  TP ++
Sbjct: 706 TNTRSEVVVLITPVIL 721


>gi|238759396|ref|ZP_04620561.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
 gi|238702423|gb|EEP94975.1| Possible type III secretion system protein [Yersinia aldovae ATCC
           35236]
          Length = 557

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 40/262 (15%), Positives = 85/262 (32%), Gaps = 22/262 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I +V +  +  +G +                            F+   + D
Sbjct: 302 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GNIGVAGGSVTFNRSTLSD 347

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   + A+ +    R ++ P +       A F +      +         ++    Y
Sbjct: 348 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGDRVATLEQVTY 405

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
           G ++   P +     + + +  E               G +P       +T   +    +
Sbjct: 406 GTMISVLPRLSGGSGVEMEVNIEDGGLNRDNTGKVADIGGLPEVNRTNINTVARIGRDKS 465

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427
           +++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+      D 
Sbjct: 466 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLDENEAWDG 525

Query: 428 SRPDDHYSVEDDAKAFFFNRVN 449
            +  D+              V 
Sbjct: 526 RQFSDN-ERLTRHDGQLRGTVE 546


>gi|167587171|ref|ZP_02379559.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia ubonensis Bu]
          Length = 341

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 46/256 (17%), Positives = 93/256 (36%), Gaps = 30/256 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
              + ++  + E+    LKQ+G       S               + +   + +   +  
Sbjct: 89  PRLIEIEARMIEIDEGALKQLGIDWRAHNSHFDLQTGTGLTSQNSYANGSLNPTFGSISL 148

Query: 253 RFS------------------------FETVLHALERATAIRTLAEPTLTAISGQSASFT 288
             +                            ++ALE A   RT A P +T +    A   
Sbjct: 149 SGNDSVSVPASPLGLSLTAVLGDAGRYLLARINALESANQARTDASPKVTTLDNVEAVMD 208

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNA 345
           +  Q   +    ++    + +   GV L   P V+  G   +I L ++  V   +     
Sbjct: 209 NKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSRQTV 265

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            ++P     + +T   +  G  +++AG   D     + G+P+LSK+P++G LFR++    
Sbjct: 266 DNIPVIVSTEINTQAFIEQGQALLIAGYKMDARSSTQSGVPVLSKLPLIGGLFRSTDKED 325

Query: 406 EETEIFIAATPFLVKP 421
             +E     TP +++P
Sbjct: 326 SHSERLFLVTPRVIEP 341


>gi|323978511|gb|EGB73593.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli TW10509]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   S  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|320662066|gb|EFX29467.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. USDA 5905]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|269964448|ref|ZP_06178689.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
 gi|269830786|gb|EEZ85004.1| Fimbrial assembly protein PilQ [Vibrio alginolyticus 40B]
          Length = 581

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T               ++++  L+I  + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 382

Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +    F V  +      +  L AL++ +    ++ P L   + +
Sbjct: 383 GIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 442

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341
            A    G +  Y    SS+GAT+VT     + L  TP +    R+ L +      P  V+
Sbjct: 443 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 501

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S
Sbjct: 502 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 561

Query: 402 RFNREETEIFIAATPFLV 419
             N  ++E+ I  TP +V
Sbjct: 562 YENVGKSELLIFVTPKVV 579


>gi|323202935|gb|EFZ87970.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Salmonella enterica subsp. enterica serovar Montevideo
           str. 609460]
          Length = 429

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 44/270 (16%), Positives = 94/270 (34%), Gaps = 18/270 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 167 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 218

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 219 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 274

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 275 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 332

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +  +  +     +    +P  +  +  +   L +G +++L G  +      +  IPLL 
Sbjct: 333 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLG 392

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
            IP++G LFRN                 +V
Sbjct: 393 DIPVVGHLFRNDTTQVHSVIRLFLIKASVV 422


>gi|163803103|ref|ZP_02196987.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
 gi|159173095|gb|EDP57927.1| DNA-binding transcriptional regulator OxyR [Vibrio sp. AND4]
          Length = 559

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 111/269 (41%), Gaps = 34/269 (12%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFV- 239
           +++  L+I  + QV ++  I  +    + ++G +  ++ + +G     S  ++     + 
Sbjct: 291 EIIQSLDIPVK-QVQIEARIVMINEGSMDELGVRWGLSSADAGYRLGGSIESNLATIGLY 349

Query: 240 ---------------------------SEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
                                      +    F V  +      +  L AL++ +    +
Sbjct: 350 DGGDGDDSSSVDIDDLLNVNLAVTRPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIV 409

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           + P L   + + A    G +  Y    SS+GATSV      + L  TP +    R+ L +
Sbjct: 410 SSPRLITTNKKPAYIEQGTEIPYLES-SSSGATSVAFKKAVLSLKVTPQITPDNRLVLDL 468

Query: 333 QTEVSEP--VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
                 P  V+    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  
Sbjct: 469 SVTQDRPGQVVKTGTGEAVAINTQRIGTQVLVDNGETVVLGGIFQHSITNSVDKVPLLGD 528

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           +P+LGALFR +  N  ++E+ I  TP +V
Sbjct: 529 LPLLGALFRRTYENVGKSELLIFVTPKVV 557


>gi|90412668|ref|ZP_01220670.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
 gi|90326476|gb|EAS42888.1| putative type II secretory pathway, component EpsD [Photobacterium
           profundum 3TCK]
          Length = 406

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/280 (17%), Positives = 109/280 (38%), Gaps = 12/280 (4%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQVTLKVTIA 203
           VL    +   + Q A  +       S     + S   ++ NL+        QV +   + 
Sbjct: 133 VLTAYSKNTGEMQTAYSVITLPNINSMIVTGSPSQLTQIDNLIKRVDVRRKQVLIDAVVM 192

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           + R    + IG    +    +G           K   +GG+     + D+     ++ A+
Sbjct: 193 DTRLGDSESIGVSLDVLLEGAGFRLISNPVASIKESFKGGNI----IYDKGDVSALVTAI 248

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA----TSVTTHDYGVVLHFT 319
            +    + L++P L  +  +  +   G    +   + ++        +   + G+ L   
Sbjct: 249 TQNQNTKLLSKPYLLVMDREKGAINVGQNVPFLVSTETSNNGSLVQKIERQNVGLGLSVV 308

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P +++   + L I    S       A D+     R+ +T V++  G +I+L GL+ D+ +
Sbjct: 309 PHIVND-SVVLAINQTSSSVSDSDIASDI-ITNNREINTVVQVLDGQSIILGGLVSDESR 366

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + + G+PLL  IP +G LFR +      +++ +     ++
Sbjct: 367 KSESGVPLLKDIPWIGGLFRTTSDKSVSSQMSVLIKVTVI 406


>gi|323966662|gb|EGB62094.1| YscC/HrcC family protein type III secretion outer membrane pore
           [Escherichia coli M863]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   S  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|218706369|ref|YP_002413888.1| protein invG [Escherichia coli UMN026]
 gi|293406360|ref|ZP_06650286.1| invG [Escherichia coli FVEC1412]
 gi|293412219|ref|ZP_06654942.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298382096|ref|ZP_06991693.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300896248|ref|ZP_07114795.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331674348|ref|ZP_08375108.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
 gi|62085071|gb|AAX62936.1| putative type III secretion apparatus protein [Escherichia coli]
 gi|218433466|emb|CAR14368.1| Protein invG precursor [Escherichia coli UMN026]
 gi|284922811|emb|CBG35899.1| type III secretion system protein [Escherichia coli 042]
 gi|291426366|gb|EFE99398.1| invG [Escherichia coli FVEC1412]
 gi|291468990|gb|EFF11481.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B354]
 gi|298277236|gb|EFI18752.1| type III secretion protein SctC [Escherichia coli FVEC1302]
 gi|300359869|gb|EFJ75739.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 198-1]
 gi|331068442|gb|EGI39837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA280]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   S  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|291284183|ref|YP_003501001.1| putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
 gi|290764056|gb|ADD58017.1| Putative type III secretion apparatus protein [Escherichia coli
           O55:H7 str. CB9615]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|167828524|ref|ZP_02459995.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
 gi|226199138|ref|ZP_03794700.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225928913|gb|EEH24938.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 588

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 45/262 (17%), Positives = 95/262 (36%), Gaps = 27/262 (10%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS------------------- 223
            ++  L+I     + ++  I E+  D+L++IG       S                    
Sbjct: 327 PLIQQLDIR-PRLIEIQAHIMEIDNDLLREIGVDWRAHNSHGDIQTGTGNTAQNDYSGGQ 385

Query: 224 ---SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                 + + A +        G   +             + AL+  + ++  A P +  +
Sbjct: 386 INPFFGTTTLAGNAVVNAAPAGVSVTAVVGDAARYLMARVSALQSTSKVKIDASPLVATL 445

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP 339
               A   +  +   K    ++    + +   GV L   P ++  G    +++   V++ 
Sbjct: 446 DNSEAVMDNTTRFFVKVSGYASAE--LYSVSTGVSLRVLPMIVQDGSETRIKMNVHVTDG 503

Query: 340 V-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
              G    ++P     + +T   +  G ++++AG   D       G+P LSKIP+LGALF
Sbjct: 504 QLTGDQVDNLPVITSSEINTQAFVGQGQSLLIAGYSTDKRANGVAGVPWLSKIPLLGALF 563

Query: 399 RNSRFNREETEIFIAATPFLVK 420
           R    ++   E     +P ++ 
Sbjct: 564 RYHSDSQNHMERVFLLSPRIID 585


>gi|320107862|ref|YP_004183452.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926383|gb|ADV83458.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 810

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 70/402 (17%), Positives = 128/402 (31%), Gaps = 50/402 (12%)

Query: 48  KKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS-PRTMYLFGKNVGQ-----ANVIL 101
           + IS      +I     + + + V      D+   S    + + GK  G          +
Sbjct: 205 QGISKLAGLNVIFDPDYNSRRISV------DLSNVSLTNALRIVGKLAGTFWSPLTENTI 258

Query: 102 IGHDGKQMLNLD-------------ILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVL 147
                 +  + D             +  + D   +   LR  +   + + +    + +V+
Sbjct: 259 FVAQNNRAKHTDNDSLAVETFYLTNMSQQNDANEVVTALRNLLDPSTKVFLLASQNAIVI 318

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                 +   ++ ++  +    +   +      S+ +   L I                 
Sbjct: 319 RATPAELVLVEKLIDDFDRIRPEVVVDVAVLEVSRDLERNLGITLP-------------- 364

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                +  Q S   SSS  S S  +                           ++AL   +
Sbjct: 365 -TSFSLSAQASNANSSSSSSSSTTSSSTSGLTLNTLANLNGTNFAVTLSSASVNALLSDS 423

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHL-------YKTVSSSTGATSVTTHDYGVVLHFTP 320
             R L  P + A  GQ A+   G +             S++T  T  T  D GV +  TP
Sbjct: 424 DTRVLQNPRVRASDGQQATLKIGSKIPVATGSTTSTLTSTATATTQFTYVDVGVNIDMTP 483

Query: 321 TVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           TV   G++ L+++ EVS        +    P    R     ++L  G   +LAGLL+   
Sbjct: 484 TVHLDGQVSLKMKIEVSSQTGTTTISGVSEPIISQRVVQQVIQLKDGEPSILAGLLQQSD 543

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +   G P L +IP L   F +    +   EI     P +V+
Sbjct: 544 TKSVSGTPGLGEIPFLKYFFSSQDKKQSSDEIVFLLIPHIVR 585


>gi|15803397|ref|NP_289430.1| type III secretion apparatus protein [Escherichia coli O157:H7
           EDL933]
 gi|15832987|ref|NP_311760.1| EivG [Escherichia coli O157:H7 str. Sakai]
 gi|168747661|ref|ZP_02772683.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|168753799|ref|ZP_02778806.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168759989|ref|ZP_02784996.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|168766854|ref|ZP_02791861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|168775738|ref|ZP_02800745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|168778875|ref|ZP_02803882.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|168785707|ref|ZP_02810714.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|168799994|ref|ZP_02825001.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|195936479|ref|ZP_03081861.1| EivG [Escherichia coli O157:H7 str. EC4024]
 gi|208807740|ref|ZP_03250077.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208812874|ref|ZP_03254203.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208821461|ref|ZP_03261781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209395847|ref|YP_002272337.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217327396|ref|ZP_03443479.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254794814|ref|YP_003079651.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|261226174|ref|ZP_05940455.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256572|ref|ZP_05949105.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|12517375|gb|AAG57989.1|AE005515_11 type III secretion apparatus protein [Escherichia coli O157:H7 str.
           EDL933]
 gi|13363205|dbj|BAB37156.1| type III secretion protein EivG [Escherichia coli O157:H7 str.
           Sakai]
 gi|187768795|gb|EDU32639.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4196]
 gi|188017811|gb|EDU55933.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4113]
 gi|189003611|gb|EDU72597.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4076]
 gi|189358709|gb|EDU77128.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189363622|gb|EDU82041.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4486]
 gi|189369391|gb|EDU87807.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4501]
 gi|189373912|gb|EDU92328.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC869]
 gi|189377689|gb|EDU96105.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC508]
 gi|208727541|gb|EDZ77142.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4206]
 gi|208734151|gb|EDZ82838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4045]
 gi|208741584|gb|EDZ89266.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4042]
 gi|209157247|gb|ACI34680.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. EC4115]
 gi|217319763|gb|EEC28188.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli O157:H7 str. TW14588]
 gi|254594214|gb|ACT73575.1| type III secretion apparatus protein [Escherichia coli O157:H7 str.
           TW14359]
 gi|320640504|gb|EFX10043.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. G5101]
 gi|320645751|gb|EFX14736.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. 493-89]
 gi|320651051|gb|EFX19491.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H- str. H 2687]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|293416115|ref|ZP_06658755.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
 gi|291432304|gb|EFF05286.1| YscC/HrcC family type III secretion outer membrane pore
           [Escherichia coli B185]
          Length = 567

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IIIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|213024121|ref|ZP_03338568.1| outer membrane porin HofQ [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 148

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 73/145 (50%), Gaps = 2/145 (1%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQT 334
           + A   Q AS   G +  Y+  S  +GATSV   +  + +  TPTVL  GRI L+  I  
Sbjct: 1   MLASHLQPASIKQGSEIPYQVSSGESGATSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQ 60

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
            V   V+    G++ +   ++ +T VE+ SG T+ L G+     +   + +PLL  IP L
Sbjct: 61  NVPGQVLQQADGEVLAIDKQEIETQVEVKSGETLALGGIFSRKNKSGSDSVPLLGDIPWL 120

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
           G LFR+     E  E+ +  TP LV
Sbjct: 121 GQLFRHDGKEDERRELVVFITPRLV 145


>gi|11991134|gb|AAG42220.1| unknown [Shewanella putrefaciens 200]
          Length = 258

 Score =  134 bits (337), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 43/172 (25%), Positives = 73/172 (42%), Gaps = 7/172 (4%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSVT 308
             F  ++ A+   T    LA P +T +  Q ASF  G +         + ++S    +V 
Sbjct: 8   GDFGALIQAVSSDTNSNVLATPXITTLDNQEASFIVGDEVPILTGSTASSNNSNPFQTVE 67

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             + GV L   P +     + L I+ EVS            S+  R+  TTV   SG  +
Sbjct: 68  RKEVGVKLKVVPQINEGNAVKLAIEQEVSGVNGNTGVD--ISFATRRLTTTVMADSGQIV 125

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           VL GL+ + +Q+  + +  L  IP+LG L       + +  + I   P +++
Sbjct: 126 VLGGLINEXVQESVQKVLSLGDIPVLGHLSNLPPVXKTKKNLMIFIKPTIIR 177


>gi|225165932|ref|ZP_03727695.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
 gi|224799824|gb|EEG18290.1| type II and III secretion system protein [Opitutaceae bacterium
           TAV2]
          Length = 809

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/264 (18%), Positives = 92/264 (34%), Gaps = 14/264 (5%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++V IAEV        G         +G    FAA   G  ++   + +        
Sbjct: 440 QVRIEVVIAEVSLSDEATSGIDTLGLRIENGVLTGFAASGPGGKIAGIDNGTFFQTAKEN 499

Query: 255 SFETVLHALER--ATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKTVSSSTGATSV 307
           +   V+             L+ PT+     Q A    G +         T  S + ++ +
Sbjct: 500 ALAGVISLSTTPRKNNTNILSVPTIVTSHNQEAEVFIGEKRPIITGTTTTSDSLSTSSQI 559

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSG 365
           T    G+ L  TP +   G + ++++ +V +    + ++  + P    R A + +   SG
Sbjct: 560 TQQQIGITLTVTPLIGPNGSVQMQLEQKVEDISGFVTIDGNEQPITTDRNAKSFLSARSG 619

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
             +VL G+ +            L  IP +G LF       + TEI     P ++    + 
Sbjct: 620 DIVVLGGMQRTKKGNTTSR---LGPIPWIGDLFGKRSKTDQRTEILFFIRPTVLTNTQLD 676

Query: 426 DLSR--PDDHYSVEDDAKAFFFNR 447
           ++      D      + +     R
Sbjct: 677 NVEAYQQVDRAPHAAEIRKVLDTR 700


>gi|269961466|ref|ZP_06175830.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
 gi|269833843|gb|EEZ87938.1| Fimbrial assembly protein PilQ [Vibrio harveyi 1DA3]
          Length = 563

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 63/319 (19%), Positives = 119/319 (37%), Gaps = 38/319 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T               ++++  L+I  + QV
Sbjct: 245 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 303

Query: 197 TLKVTIAEVRRDILKQIGFQHSITG---------------------------------SS 223
            ++  I  +    + ++G +   T                                  SS
Sbjct: 304 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 363

Query: 224 SGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
            G       +      +     F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 364 VGIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 423

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           + A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V
Sbjct: 424 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 482

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR 
Sbjct: 483 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 542

Query: 401 SRFNREETEIFIAATPFLV 419
           S  N  ++E+ I  TP +V
Sbjct: 543 SYENVGKSELLIFVTPKVV 561


>gi|331654358|ref|ZP_08355358.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
 gi|331047740|gb|EGI19817.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli M718]
          Length = 567

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|123443735|ref|YP_001007706.1| type III secretion system protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090696|emb|CAL13572.1| possible type III secretion system protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 563

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 38/233 (16%), Positives = 81/233 (34%), Gaps = 21/233 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I +V +  +  +G +                  G         F+   + D
Sbjct: 308 RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSVTFNRSTLSD 353

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
             +F   + A+ +    R ++ P +       A F +      +         S+    Y
Sbjct: 354 SKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGERVASLQQVTY 411

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
           G ++   P +     + + +  E        +        +P       +T   +    +
Sbjct: 412 GTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINTVARIGRDKS 471

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L+ 
Sbjct: 472 LLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRLLD 524


>gi|301027449|ref|ZP_07190786.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
 gi|300394957|gb|EFJ78495.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 69-1]
          Length = 567

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|91227284|ref|ZP_01261709.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
 gi|91188678|gb|EAS74967.1| fimbrial assembly protein [Vibrio alginolyticus 12G01]
          Length = 560

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/318 (18%), Positives = 118/318 (37%), Gaps = 37/318 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T               ++++  L+I  + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 301

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 302 QIEARIVTINEGNMDELGIRWGFTSINGSNTVGGSIENNLATIGLYNGEGGDDGGDGDGV 361

Query: 232 --------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                           +    F V  +      +  L AL++ +    ++ P L   + +
Sbjct: 362 GIDDFLNVNLAATSPNATSLAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKK 421

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VI 341
            A    G +  Y    SS+GAT+VT     + L  TP +    R+ L +      P  V+
Sbjct: 422 PAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQVV 480

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
               G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S
Sbjct: 481 KTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRS 540

Query: 402 RFNREETEIFIAATPFLV 419
             N  ++E+ I  TP +V
Sbjct: 541 YENVGKSELLIFVTPKVV 558


>gi|307546346|ref|YP_003898825.1| type IV pilus assembly protein PilQ [Halomonas elongata DSM 2581]
 gi|307218370|emb|CBV43640.1| K02666 type IV pilus assembly protein PilQ [Halomonas elongata DSM
           2581]
          Length = 445

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/286 (19%), Positives = 112/286 (39%), Gaps = 31/286 (10%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           +  R    + T            ++ ++++  L++A   QV ++  I   R  + +++G 
Sbjct: 164 ERGRVAVDARTNTLLVQDTAERVAAIRRMLERLDVAVR-QVRIEARIVIARDSVARELGV 222

Query: 216 QHSITGSSSGPSKSFAADFG---------------------GKFVSEGGDFSVKGVLDRF 254
                    G S +  +                        G   S    F    +    
Sbjct: 223 SW-------GLSANEGSTPSGLNAAGASSGVAETGGLAVDLGSARSPATTFGFGYLSGDV 275

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
             +  L ALE     R +++P +   + ++A    G +  Y+  +SS GAT+V   +  +
Sbjct: 276 LLDLELRALESEGKSRIISQPRVITANQRTALIKQGTEIPYQEATSS-GATNVEFKEAVL 334

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
            L  TP +    RI + +    ++ V     G  P+    +  T V +  G T+VL G+L
Sbjct: 335 SLEVTPQITPDDRIIMELVIN-NDTVAQETFGGAPAIDTNQIATQVLVDDGDTVVLGGIL 393

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             +  +     PLL  +P+LG LFR +  + ++ E+ +  TP ++ 
Sbjct: 394 TTEQVRQLFKTPLLGDLPLLGHLFRYTENSSDQVELLVFITPRILD 439


>gi|300697476|ref|YP_003748137.1| type III secretion protein [Ralstonia solanacearum CFBP2957]
 gi|299074200|emb|CBJ53745.1| Type III secretion protein [Ralstonia solanacearum CFBP2957]
          Length = 589

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 45/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I ++    L+Q+G    +  S         A+                        
Sbjct: 347 ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 406

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 407 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 466

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 467 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 524

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   D   +  + +P LSKIP++GALFR  +   +  +     TP
Sbjct: 525 DTQALINEGESLLIAGYSVDQQAKTVDAVPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 584

Query: 417 FLVKP 421
            ++ P
Sbjct: 585 RVITP 589


>gi|327251623|gb|EGE63309.1| hypothetical protein ECSTEC7V_3473 [Escherichia coli STEC_7v]
          Length = 505

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 93  DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   S  
Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFASRN 362

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458


>gi|254229802|ref|ZP_04923209.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262393099|ref|YP_003284953.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
 gi|151937701|gb|EDN56552.1| type IV pilus secretin PilQ subfamily [Vibrio sp. Ex25]
 gi|262336693|gb|ACY50488.1| type IV pilus biogenesis protein PilQ [Vibrio sp. Ex25]
          Length = 582

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T               ++++  L+I  + QV
Sbjct: 264 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 322

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 323 QIEARIVTINEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYNGGGEGEDGGDGDG 382

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 383 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 442

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           + A    G +  Y    SS+GAT+VT     + L  TP +    R+ L +      P  V
Sbjct: 443 KPAYIEQGTEIPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 501

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR 
Sbjct: 502 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 561

Query: 401 SRFNREETEIFIAATPFLV 419
           S  N  ++E+ I  TP +V
Sbjct: 562 SYENVGKSELLIFVTPKVV 580


>gi|167567127|ref|ZP_02360043.1| type III secretion system EscC protein [Burkholderia oklahomensis
           EO147]
          Length = 482

 Score =  134 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                V + V I ++  + L  +G   S +    G S SF +       S     +    
Sbjct: 254 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 309

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +  SF   L AL++ +  R L+ P++  +    A          K   S+     + + 
Sbjct: 310 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 366

Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366
             G +L  TP ++   GR  + +   V +            +P     +  T   L  G 
Sbjct: 367 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 426

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++L G ++D++ + +  IPLL  IP LG LF+ +R ++  T       
Sbjct: 427 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 475


>gi|320667142|gb|EFX34105.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O157:H7 str. LSU-61]
          Length = 505

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 93  DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 137

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 138 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 196

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 197 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 255

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 256 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 304

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 305 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 362

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 363 QIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRK 422

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 423 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 458


>gi|187919918|ref|YP_001888949.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
 gi|187718356|gb|ACD19579.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia phytofirmans PsJN]
          Length = 637

 Score =  134 bits (336), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 69/435 (15%), Positives = 136/435 (31%), Gaps = 32/435 (7%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ--VPVDVQDVL 70
           +  L S   + ++LP       AV++     +           +   +   V   V  V 
Sbjct: 141 AGLLSSLGLADSRLPVRYSDTTAVVSGPSGFVDAVSSAVAEAQRQTTITPSVDETVIRVF 200

Query: 71  VSDPTKA-DVVVHSPRTMYLFGKNVGQANVI----------LIGHDGKQMLNLDILIERD 119
                +A D+   S     +     G A+++          +   +           ER 
Sbjct: 201 PLQYAQAQDITYTSGNQRQVV---PGVASLLRKLMADVPVSVPDRENATRSRNQARAERG 257

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                 +LR  +  + ++ E   D ++    V     +     +     + S       S
Sbjct: 258 GPPPLPSLR-GLGLAGLQQEPELDPLLPVAEVMRPAAAPIQRNIVADARTNSVVIYDVPS 316

Query: 180 SSKKVMNLLNIAGEDQ--VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
                   + +  + Q  V +   + ++  D    +G              +        
Sbjct: 317 MMPSYARTIAMLDKQQDLVEITAVVIDITSDAASDLGIHWGGATRGGAGGYAVMNSSPTV 376

Query: 238 FVS------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             S       G + +             +H LE++   R L+ P +  ++   A  +S  
Sbjct: 377 LASSLIPALAGLNLATMIGSSANYLFAKIHLLEQSGKARILSRPQVLTLNNSEAILSSRN 436

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG----RIGLRIQTEVSEPVIGVNAGD 347
               +          +   D G+ L  TPTV S       I L +Q +       ++   
Sbjct: 437 SLYVRVA--GNQDVDLYNVDTGLTLKVTPTVESGSDSARNILLSVQIDDGAFDSSLSVDG 494

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P        T   +  G +++L G   +  Q     + +L  +P +GALFR+++   E 
Sbjct: 495 IPKVNNHSIVTQAVVADGESLLLGGYEYERSQTASSQVHVLGHLPYVGALFRDTQTQVER 554

Query: 408 TEIFIAATPFLVKPV 422
            E  I  TP  VKP+
Sbjct: 555 LERLILITPR-VKPM 568


>gi|167574392|ref|ZP_02367266.1| type III secretion system EscC protein [Burkholderia oklahomensis
           C6786]
          Length = 487

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 48/229 (20%), Positives = 87/229 (37%), Gaps = 11/229 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                V + V I ++  + L  +G   S +    G S SF +       S     +    
Sbjct: 259 RKPKLVEISVAIIDINAEDLGALGVDWSASARIGGGSVSFNSGGQPDAGSFSTVIA---- 314

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
            +  SF   L AL++ +  R L+ P++  +    A          K   S+     + + 
Sbjct: 315 -NTGSFMVQLSALQQNSKARILSRPSIVTLDNMQAVLDRNITFYTKV--SAERVAKLESI 371

Query: 311 DYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGG 366
             G +L  TP ++   GR  + +   V +            +P     +  T   L  G 
Sbjct: 372 STGSLLRVTPRIIGDAGRQEVMLTLVVQDGRQTSPLSQQEPLPQTLSSEIATHSLLKEGE 431

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++L G ++D++ + +  IPLL  IP LG LF+ +R ++  T       
Sbjct: 432 ALLLGGFVQDELSEGERKIPLLGDIPFLGRLFKTTRQSQRHTVRLFLIK 480


>gi|299069241|emb|CBJ40501.1| Type III secretion protein [Ralstonia solanacearum CMR15]
          Length = 590

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I ++  + L+Q+G    +  S          +                        
Sbjct: 348 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 407

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 408 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 467

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 468 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 525

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     TP
Sbjct: 526 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 585

Query: 417 FLVKP 421
            ++ P
Sbjct: 586 RVITP 590


>gi|186976189|gb|ACD01071.1| EivG [Escherichia coli O157:H7 str. EC10]
          Length = 567

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 66/396 (16%), Positives = 125/396 (31%), Gaps = 39/396 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
               G A V+    +     +  + +  +I+     L+              D + +  +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 151 VRTIQ--DSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVR 206
           + T    ++     ++    +        +     +K++  L+I     + L + I ++ 
Sbjct: 259 ISTAGAPETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDID 317

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L+Q+G   S                G    +   +      LD   F   + AL + 
Sbjct: 318 KTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQK 366

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
                +A P +       A F +      K V   T    +    YG ++   P   +  
Sbjct: 367 RRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARN 424

Query: 327 RIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           +I L +  E          N  D+P        T   +P G ++++ G  +D        
Sbjct: 425 QIELLLNIEDGNEINSDKTNVDDLPQVGRTFISTIARVPQGKSLLIGGYTRDTNTYESRK 484

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           IP+L  IP +G LF     N           P  + 
Sbjct: 485 IPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|3228547|gb|AAC34756.1| HrcC [Pseudomonas syringae pv. tomato]
          Length = 700

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 47/242 (19%), Positives = 87/242 (35%), Gaps = 15/242 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L++   + + +   I ++  + L ++  +              AA   G  + +
Sbjct: 307 QKLVKELDVP-RNLIEIDAVILDIDPNELAELSSRLEFQ--------CPAASEVGANLFD 357

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           GG  S   + +   F   LHALE   +   +A P++  +  Q A               S
Sbjct: 358 GGTSSTLFLQNASKFSAELHALEGNGSASVIANPSILTLENQPAVIDLSRTEYLTPT--S 415

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             A  +     G  L   P  L      ++ + +  E  +  +       PS R     T
Sbjct: 416 ERAADILPITAGTSLQVIPRSLDNDGKPQVQMIVDIEDGQIDVSTINDTQPSVRRGNVST 475

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPF 417
              +   G++V+ G    +       IPLL  IP +G  LF++      + E     TP 
Sbjct: 476 QAVIAEHGSLVIGGFHGLEANDRIHKIPLLGDIPYIGKLLFQSRSRELSQRERLFILTPR 535

Query: 418 LV 419
           L+
Sbjct: 536 LI 537


>gi|156972409|ref|YP_001443316.1| type IV pilus secretin PilQ [Vibrio harveyi ATCC BAA-1116]
 gi|156524003|gb|ABU69089.1| hypothetical protein VIBHAR_00029 [Vibrio harveyi ATCC BAA-1116]
          Length = 583

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 118/319 (36%), Gaps = 38/319 (11%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + D         T               ++++  L+I  + QV
Sbjct: 265 KASDIAEMINGEGNISMLSDRGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 323

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 324 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIGLYDGGGDGEGDDGGSS 383

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 384 VGIDDFLNVNLAATSPNATSIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 443

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--V 340
           + A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V
Sbjct: 444 KPAYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGQV 502

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
           +    G+  +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR 
Sbjct: 503 VKTGTGEAVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRR 562

Query: 401 SRFNREETEIFIAATPFLV 419
           S  N  ++E+ I  TP +V
Sbjct: 563 SYENVGKSELLIFVTPKVV 581


>gi|331664433|ref|ZP_08365339.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
 gi|331058364|gb|EGI30345.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli TA143]
          Length = 567

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 64/399 (16%), Positives = 125/399 (31%), Gaps = 45/399 (11%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145
               G A V+    +     +  + +  +I+     L+          +    ++  + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
           +         ++     ++    +        +     +K++  L+I     + L + I 
Sbjct: 259 IATAGAP---ETDNIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           ++ +  L+Q+G   S                G    +   +      LD   F   + AL
Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            +      +A P +       A F +      K V   T    +    YG ++   P   
Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421

Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +I L +  E          N  D+P        T   +P G ++++ G  +D     
Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              IP+L  IP +G LF     N           P  + 
Sbjct: 482 SRKIPILGSIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|262394223|ref|YP_003286077.1| putative maturation protein [Vibrio sp. Ex25]
 gi|262337817|gb|ACY51612.1| putative maturation protein [Vibrio sp. Ex25]
          Length = 353

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/233 (18%), Positives = 85/233 (36%), Gaps = 14/233 (6%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV ++  I E      +++G    +  S         A F  +  +          
Sbjct: 131 RPQKQVFIEAVITETELGDSQEVGVNMDLALSE--------AGFVSQPTAIKKAVDNLLF 182

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----VSSSTGATS 306
            +   F  ++ A+ +    + L+ P +  +  +    T G    + T             
Sbjct: 183 YEGGDFNALIKAVSKNQNTKLLSRPNMFIMDRERGYITVGQNVPFLTSSEVTDGGNRVQQ 242

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           +   D GV L   P V+    +      + S+ V   +         R   T V++    
Sbjct: 243 IERKDVGVSLEVVPHVIGDHVVL--QIMQKSDSVTDSSIASDIITNTRTLQTVVKVKDRQ 300

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           TI L GL+  + +    G+P+L  +P+LGALFR+ + N  + E+ +     ++
Sbjct: 301 TISLGGLISQEQRDSVSGVPVLMDVPLLGALFRSEKTNTVDKELKVTIRTTIL 353


>gi|299138919|ref|ZP_07032096.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298599073|gb|EFI55234.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 901

 Score =  133 bits (335), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 71/409 (17%), Positives = 145/409 (35%), Gaps = 39/409 (9%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQV-PVDVQDVLVSDP-TKADV------VVHSPRTMYLF 90
                IGK   +++  +   + +  PVD+  V + D                +  T+++ 
Sbjct: 277 AIYQAIGKAAGLNVIFDPDYVSKSIPVDLTSVSLYDALRIVGTLSGTFWKPVTSNTIFV- 335

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI-ADSNIRVEMVSDTVVLHG 149
            +N       L     +     ++  + D   + + LR  +     I +    + ++L  
Sbjct: 336 AQNNRTKRTDLDDLAVQTFYLTNVSQQNDANEILVALRNLLDPALKIYLVASQNALILRA 395

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               +  +++ +   +   ++   +      S++    L I                  +
Sbjct: 396 TPSELILAEKLINDLDRTRAEVVVDVAVLEVSRQKERDLGITLPT-----------SFGL 444

Query: 210 LKQI-GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL-----HAL 263
             Q      +   SS+G + +  +       S     +  G L+  +F   L     +AL
Sbjct: 445 TPQFSNQNVTNNNSSTGTNTNTGSGAPTTTTSSSLTLNSLGNLNATNFAVSLSGGTVNAL 504

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYG 313
                 R L  P + A  GQ ++   G +    T S ++G           T  T  D G
Sbjct: 505 LSDLDTRILQNPRIRATDGQHSTLKIGEKIPVATGSYNSGVSTGLANIGVQTQFTYLDVG 564

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           V +  TPTV     + L+++ E+S     + ++    P    R A+  ++L  G   +LA
Sbjct: 565 VNIDITPTVHYDHEVSLKMKVEISASNGNVTISGVTEPIITQRVAEQVIQLKDGEPSILA 624

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           GLL+ +  +   G P L ++P     F +    ++  EI     P +V+
Sbjct: 625 GLLQQEDTKTINGTPGLGELPFFKYFFSSQDKVQQSDEIVFLIIPHIVR 673


>gi|219566964|dbj|BAH04995.1| Hrp conserved transmembrane protein [Ralstonia solanacearum]
          Length = 568

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I ++  + L+Q+G    +  S          +                        
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     TP
Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563

Query: 417 FLVKP 421
            ++ P
Sbjct: 564 RVITP 568


>gi|17549095|ref|NP_522435.1| Hrp conserved HRCC transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|2833448|sp|Q52498|HRPA_RALSO RecName: Full=Hypersensitivity response secretion protein hrpA;
           Flags: Precursor
 gi|6066715|emb|CAB58261.1| HrpA [Ralstonia solanacearum]
 gi|17431346|emb|CAD18025.1| hrp conserved hrcc transmembrane protein [Ralstonia solanacearum
           GMI1000]
 gi|1097294|prf||2113360W hrpA gene
          Length = 568

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 43/245 (17%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I ++  + L+Q+G    +  S          +                        
Sbjct: 326 ISASIIDISENALEQLGVDWRLHNSRFDLQTGNGTNTMLNNPGSLDSVATTAGAAAAIAA 385

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 386 TPAGGVLSAVIGGGSRYLMARISALQQTDQARITANPKVATLDNTEAVMDNRQNFYVPVA 445

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 446 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPITSQSEI 503

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   +   +  + +P LSKIP++GALFR  +   +  +     TP
Sbjct: 504 DTQALINEGDSLLIAGYSVEQQSKSVDAVPGLSKIPLVGALFRTDQTTGKRFQRMFLVTP 563

Query: 417 FLVKP 421
            ++ P
Sbjct: 564 RVITP 568


>gi|194292010|ref|YP_002007917.1| sctc: non flagellar t3S system conserved protein. gsp d family
           [Cupriavidus taiwanensis LMG 19424]
 gi|193225914|emb|CAQ71861.1| SctC: non flagellar T3S system conserved protein. GSP D family
           [Cupriavidus taiwanensis LMG 19424]
          Length = 580

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 47/256 (18%), Positives = 91/256 (35%), Gaps = 20/256 (7%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT------------GSSSGPSKSF 230
           +++  L++     V ++VTI ++ +  L  +G    +             G++     + 
Sbjct: 325 RLIESLDVK-PRLVEIEVTIMDISQADLDSLGVDWRLHTPHVDLQLGGGNGNAGLSFGNL 383

Query: 231 AADFGGKFVSEGGDFSVKGVLDRF---SFETVLHALERATAIRTLAEPTLTAISGQSASF 287
           A + G    + G      G +         T + AL        +A P +  +    A+ 
Sbjct: 384 ANEAGTTAATIGSGLQFTGAIGSDVTRYLLTRVKALAERGQANFVARPKVLTLDNTEAAL 443

Query: 288 TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNA 345
            +  +   +          +     G  +  TP V+     R  +         + G   
Sbjct: 444 ENLQEFYVRVDGFQDAG--LFNVTAGTAVRVTPLVVDEQQNRAVMLTIDIADGNLSGETV 501

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
             +P  R R   T   +  G ++++AG   ++      G+PLL  +PI+G LF+     +
Sbjct: 502 DRIPVVRRRSITTQAMVEEGKSLLIAGYTTEEKINASSGVPLLQDVPIIGNLFKYQEKRQ 561

Query: 406 EETEIFIAATPFLVKP 421
              E F   TP LV P
Sbjct: 562 NNMERFYLLTPRLVIP 577


>gi|171319944|ref|ZP_02909020.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
 gi|171094800|gb|EDT39838.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MEX-5]
          Length = 679

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 61/348 (17%), Positives = 114/348 (32%), Gaps = 62/348 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
           + ++N L+      V + VTI ++  D L  +G    +           G +     +  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274
              G   ++ G   S  G    F                    T ++AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
           P + A+    A   +  Q   +        +S+ +   G  +  TP ++           
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502

Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K
Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432
            G+P LS IP++G LF+ +  +    E F   TP +V           PV      R D 
Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTASMYAPDGSPVNPGADGRADP 622

Query: 433 H----YSVEDDAKAF------FFNRVNKIYGPKEASEVEGQNYKGAIG 470
           +    Y   D+  A                     SE   +      G
Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSESASRPVATTAG 670


>gi|21230696|ref|NP_636613.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66769309|ref|YP_244071.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|188992461|ref|YP_001904471.1| HrcC protein [Xanthomonas campestris pv. campestris str. B100]
 gi|21112285|gb|AAM40537.1| HrcC protein [Xanthomonas campestris pv. campestris str. ATCC
           33913]
 gi|66574641|gb|AAY50051.1| HrcC protein [Xanthomonas campestris pv. campestris str. 8004]
 gi|167734221|emb|CAP52429.1| HrcC protein [Xanthomonas campestris pv. campestris]
          Length = 605

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 40/241 (16%), Positives = 81/241 (33%), Gaps = 19/241 (7%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------------- 243
            +  TI E+R   L+ +G                       +                  
Sbjct: 368 QIDATIIEIRDGALQDLGVDWRFHSRRVDVQTGDGRGGQLGYDGSLSGAAAAGAAAPLGG 427

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +           T + ALE+    + ++ P +  +    A      Q   +    ++ 
Sbjct: 428 TLTAVLGDAGRYLMTRVSALEQTNKAKIVSTPQVATLDNVEAVMDHKQQAFVRVSGYASA 487

Query: 304 ATSVTTHDYGVVLHFTPTVLS---PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
              +     GV L   P+V+     G++ L ++ E  +         +P     +  T  
Sbjct: 488 D--LYNLSAGVSLRVLPSVVPGSPNGQMRLDVRIEDGQL-GANTVDGIPVITSSEITTQA 544

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G ++++AG   D  Q     +P LS+IP++G LF++ + +    +     TP +V 
Sbjct: 545 FVNEGQSLLIAGYASDTDQTDLNNVPGLSRIPLVGNLFKHRQQSGSRLQRLFLLTPHIVS 604

Query: 421 P 421
           P
Sbjct: 605 P 605


>gi|291280567|ref|YP_003497401.1| hypothetical protein DEFDS_P017 [Deferribacter desulfuricans SSM1]
 gi|290755269|dbj|BAI81645.1| hypothetical protein [Deferribacter desulfuricans SSM1]
          Length = 531

 Score =  133 bits (334), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 105/269 (39%), Gaps = 31/269 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------ITGSSSGPSKSFAADFG 235
                 L      +V L V + EV  D  K+ G   +        G+  G   +F +   
Sbjct: 260 DNYFKKLKERLSKEVFLDVKVLEVTYDSNKEQGIDWNALALGKYNGNKLGIRTNFVSGSP 319

Query: 236 GKFVSEGGDFS------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             F ++   FS      +         + +   ++    +   ++P    ++GQ A    
Sbjct: 320 DVFDTQPPGFSSLSLPVLTVSDADDVIKFIAGFVKGKGKLTVKSQPRQLVLNGQPAVIPV 379

Query: 290 GGQHLYKTVSSS-------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           G    Y +  SS             + +    T   GVVL F P V     I L +   +
Sbjct: 380 GQIIKYISNISSDSGSDSSLTGGDLSYSVETGTLQTGVVLQFLPKVTDDNNIVLNLGVTI 439

Query: 337 S------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +      E  +      +P   VR   +TV++ SG TIV+ G+L D+  +++  +PL+  
Sbjct: 440 NRLDKMDEKSLNGIILQLPQTSVRAVSSTVKMKSGQTIVIGGILSDNTNEIENKVPLVGD 499

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLV 419
           IPILG LF+  +  + +TE+ +  T  +V
Sbjct: 500 IPILGNLFKYKKKEKTKTEMIVIITAHVV 528


>gi|223936189|ref|ZP_03628102.1| type II and III secretion system protein [bacterium Ellin514]
 gi|223895051|gb|EEF61499.1| type II and III secretion system protein [bacterium Ellin514]
          Length = 906

 Score =  133 bits (334), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/336 (19%), Positives = 113/336 (33%), Gaps = 97/336 (28%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG-------------------- 221
           +K +  LN+A   Q+ +K    E+ ++  K +GF   +                      
Sbjct: 546 EKAIQTLNVA-PPQINIKAKFIEITQNDSKALGFDWFLGNFLLGGGKLGAQGGTAPSFAG 604

Query: 222 --SSSGPSKSFAADF-------------------------------GGKFVSEGGDFSVK 248
             S++ PS  F                                        +     +V 
Sbjct: 605 APSTANPSGVFPGSPATIDPVTGLGSLPTTIPPSTSDQLITGGLRNTAGTATVPTIATVT 664

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------- 300
           G+L    F   + ALE+   +  L  P +T  SG+ A   +       T           
Sbjct: 665 GLLTDPQFRVAIRALEQRDGVDLLTAPDVTTESGRQAQIQAIDIQTIVTGQQFGQGANGA 724

Query: 301 ---------------STGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEP----- 339
                          +T   +  T  +G VL   P V +    + + I   V+E      
Sbjct: 725 NAASGVGSTVIQNTATTSQYTTQTLPFGPVLDVIPYVSADEFSVQMTIIPTVTEFVQYDP 784

Query: 340 --------------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
                            V A  +P +R+R+  T+V +    T+VL GL+ D + ++K+ +
Sbjct: 785 PGPFVPQASAIAGGTSVVGALPLPHFRMRQVTTSVTVWDSQTVVLGGLITDSVTKIKDQV 844

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           PLL  +P +G LFR+    + +  + I  TP ++ P
Sbjct: 845 PLLGDMPFVGRLFRSESSQKTKKNLVIFVTPTIINP 880


>gi|255619353|ref|XP_002540016.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
 gi|223500090|gb|EEF22367.1| General secretion pathway protein D precursor, putative [Ricinus
           communis]
          Length = 304

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 54/277 (19%), Positives = 88/277 (31%), Gaps = 40/277 (14%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
               + T             + + V++ L++    QV ++  + EV      + G Q   
Sbjct: 28  IQADASTNSLIITAPDAVYRNLRAVIDQLDVR-RAQVYIEALVVEVTSTDASEFGVQWVG 86

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGD--------------------------------FSV 247
              ++  S                +                                   
Sbjct: 87  LTGNNNSSYRVGGLQSFSLGGSNNNIVNLALAAATGISGSGSTTTGSSIPSPTGLSIGIF 146

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
           K V        + HALE       L+ P +  +  + A+   G      T S +TG    
Sbjct: 147 KQVNGELGLGAIAHALESTGHANILSTPNMITLDNELATIKVGQNIPIITGSFTTGASGA 206

Query: 304 ---ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                +V   D G++L   P +   G I L I  E S     V++       VR  ++ V
Sbjct: 207 SNPFQTVDRKDVGLLLKVRPQISEGGTIKLAIYHENSGIDNSVSSASGIVTTVRAIESNV 266

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              +G  +VL GL+ DD  +  E +  L  IPILG L
Sbjct: 267 LADNGQIVVLGGLISDDESENNEKVRGLGDIPILGNL 303


>gi|312963506|ref|ZP_07777988.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
 gi|311282312|gb|EFQ60911.1| general secretion pathway protein D [Pseudomonas fluorescens WH6]
          Length = 641

 Score =  132 bits (333), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 64/360 (17%), Positives = 137/360 (38%), Gaps = 47/360 (13%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI----ERDIAHLEMTLRRFIA 132
            D  + +  T+ ++ +              ++   L +        D   +   +++ + 
Sbjct: 240 LDKKILNANTILVYPRRP---------DKEREYRELAVRTFYLSHSDPKVVGAEIKQVLK 290

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
              + V+   + V++                               S+ +K++  ++IA 
Sbjct: 291 PKEVLVDERLNAVIVR------------------------DGLDTLSAVEKLVEAIDIAQ 326

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG-GDFSVKGV 250
            + VT+ + + EV  +    +G Q+    G S G   +  A   G  +S   G      +
Sbjct: 327 SE-VTIDIQVLEVSLNDELNLGIQYPESVGLSVGNLANVPAGLAGIPLSALRGINGDNIL 385

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--TSVT 308
           LD  S    ++ L+R+    TLA P +   + + A+   G +    T +++     +SVT
Sbjct: 386 LDAGSTSARINMLQRSGNTVTLANPRVRVRNREEAAVNIGDKVPMVTTTTANDITTSSVT 445

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPS 364
             D G+ +   P +     + L +  E+S          N         R   T +   +
Sbjct: 446 YQDVGLQITVKPNISLSDEVNLELNVEMSHITKRIPASENVQATFELGSRSTKTLLTARN 505

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-ALFRNSRFNREETEIFIAATPFLVKPVA 423
             T +++GL++        G+P LS+IP +G  LF  ++  +++TEI +  TP + + + 
Sbjct: 506 NETQIVSGLIRTADVDEGAGLPWLSQIPWIGKKLFGTNQSTQQKTEIILLLTPRIERNLD 565


>gi|146298381|ref|YP_001192972.1| type II and III secretion system protein [Flavobacterium johnsoniae
           UW101]
 gi|146152799|gb|ABQ03653.1| GspD-like type II secretion system secretin protein [Flavobacterium
           johnsoniae UW101]
          Length = 634

 Score =  132 bits (333), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 111/306 (36%), Gaps = 21/306 (6%)

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
             I++E  S  +VL  + +   +     E  E     +  ++      K  +  ++    
Sbjct: 329 EVIQLENRSIELVLPSLPKVFSEKLEIKEFVELNGLVASGSKSILEELKLYIKQIDKIVP 388

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V ++V IA+  +    Q G +  +   +   +           V+     S+    + 
Sbjct: 389 -MVQIEVIIAQYNKSHDVQTGMKAGLDKINKQVTGGTVFPTTDMTVNSTSVNSLIDAFNG 447

Query: 254 FS----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           F           F   L  LE  + ++  + P +  ISG  A  + G    Y   S+   
Sbjct: 448 FGIFKLGKVTEAFYLNLKLLENNSIVKVESTPKIATISGHEAKLSIGETSYYFEQSNRLI 507

Query: 304 ATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
            +++           + D  + L   P V     + L I  E S  +        P    
Sbjct: 508 NSNIGNDILNSGTWKSTDANLSLSIKPYVSIDENVTLTIVVEKSSFLGRAGETAPPGKAT 567

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +K ++ V + +G  I+L GL +   +    G PLLS+IPI+   F + +  +  +++ I 
Sbjct: 568 QKFESLVRVKNGEMILLGGLDELKKEDSGSGTPLLSRIPIIKWFFSSRKKGKNNSKLHIF 627

Query: 414 ATPFLV 419
             P +V
Sbjct: 628 IKPTVV 633


>gi|322435311|ref|YP_004217523.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163038|gb|ADW68743.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 819

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 107/313 (34%), Gaps = 18/313 (5%)

Query: 121 AHLEMTLRRFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
             +   LR  +     + +    + +V+ G    +  +Q+ +   +    +   +     
Sbjct: 278 NEILTGLRLLLDPTVKLYLVPSQNAIVMRGTTDELLLAQKLINDFDRARPEVVVDVAVLE 337

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
            S+  +  L I     + L   ++              S T +SS  + S ++       
Sbjct: 338 VSRDKVRTLGITLPQSIGLTPQLSNANSTSTTSSTTTTSTTTTSSTTTSSTSSLTLNNLA 397

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
                     +         L+AL      R L  P + A  GQ A+   G +    T S
Sbjct: 398 HLNATNFAVSITGGT-----LNALLTDGDTRILQNPRIRATDGQRATLKIGSKIPIATGS 452

Query: 300 SSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGD 347
            + G           T  T  D GV +  TPTV     + ++++ EVS     V  +   
Sbjct: 453 YNAGVSTGVASIGVQTQFTYIDVGVNIDITPTVHYDREVSMKMKIEVSSQSNTVVISGVS 512

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R ++  +++  G   +LAG+L     +   G P L ++P     F       ++
Sbjct: 513 EPIISQRISEQVIQVQDGEPSILAGILTHQDSKTVSGTPFLGELPFFKYFFSTQSKETQQ 572

Query: 408 TEIFIAATPFLVK 420
            E+     P +V+
Sbjct: 573 DELVFLIIPHVVR 585


>gi|15088592|gb|AAK84103.1|AF369954_1 YsaC [Yersinia enterocolitica]
          Length = 526

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 61/421 (14%), Positives = 135/421 (32%), Gaps = 64/421 (15%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70
            LF S P +        A      I   ++  G ++++     LN+  I+      Q + 
Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           +  P      + +       G N G     + +   +G+  +         +   +  L+
Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264

Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                       +     S+++V+ G   + +  +   +L  T  +              
Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
                      QV L + I +V +  +  +G +               A   G       
Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWE-------------AGGIGVAGGSSV 346

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F+   + D  +F   + A+ +    R ++ P +       A F +      +       
Sbjct: 347 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 404

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358
             S+    YG ++   P +     + + +  E        +        +P       +T
Sbjct: 405 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 464

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +    ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L
Sbjct: 465 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 524

Query: 419 V 419
           +
Sbjct: 525 L 525


>gi|225874512|ref|YP_002755971.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
 gi|225792554|gb|ACO32644.1| type II/III secretion system protein [Acidobacterium capsulatum
           ATCC 51196]
          Length = 786

 Score =  132 bits (333), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 137/397 (34%), Gaps = 55/397 (13%)

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
             V +P T+++   +     + L     +     ++  + D   ++  LR     ++I  
Sbjct: 218 YRVITPNTIFV-AADTRAKRMQLEDQAVQTFYLHNVTQQSDFTDIQTALRNVFQTAHIFG 276

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
               + +V+      +        L+   + Q  +                   + +V +
Sbjct: 277 VASQNAIVMRATPDELL-------LARQLIGQLDQP------------------KPEVLV 311

Query: 199 KVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            V + EV R+  ++IG Q           S + SSS  S S ++       S     +  
Sbjct: 312 DVAVLEVSRNFERKIGLQLPQTATVNLQASTSSSSSSSSSSSSSSSSSSSTSSSLTLNNL 371

Query: 249 GVLDRFSFETVL-----HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             L+  +F   +       L   T  + + EP + A  GQ A    G +    T S  TG
Sbjct: 372 AHLNSNNFAVTIGQAEADLLLTNTDTQIIQEPRIRASDGQDAQLKIGEKLPVATGSYQTG 431

Query: 304 ----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGDMPSY 351
                      T     D GV +   PTVLS   + ++++ +VS      N    D P  
Sbjct: 432 AATAIVSSLVNTQFQYLDVGVNIDVKPTVLSDRDVSMKVKIDVSSTNGTENLGGVDEPII 491

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R AD T+ L +G   ++ G+ +        G P LS++P+L  +F        + ++ 
Sbjct: 492 TQRVADETIRLKNGEANLIGGIRQVQTSNSLSGTPGLSELPLLKYIFGVHDHTVSKDDLV 551

Query: 412 IAATPFLVKP--VAMRDLSRPDDHYSVEDDAKAFFFN 446
           I   P +V        DL   D   S     +     
Sbjct: 552 ILLIPHVVSAPTTNPNDLQPIDTGTSDAFQVRTVSQG 588


>gi|300936194|ref|ZP_07151130.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
 gi|300458651|gb|EFK22144.1| type III secretion outer membrane pore, YscC/HrcC family
           [Escherichia coli MS 21-1]
          Length = 567

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/399 (16%), Positives = 126/399 (31%), Gaps = 45/399 (11%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
             V+N + +       I IG NKV I+ +                    + RT  L G+ 
Sbjct: 155 DLVVNAAKLMEQNSDGIEIGRNKVGIIHLVNTF---------------VNDRTYELRGEK 199

Query: 94  ---VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF-----IADSNIRVEMVSDTV 145
               G A V+    +     +  + +  +I+     L+          +    ++  + +
Sbjct: 200 IVIPGMAKVLSTLLNNNIKQSTGVNVLSEISS-RQQLKNVSRMPPFPGAEEDDDLQVEKI 258

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
           +    V    ++     ++    +        +     +K++  L+I     + L + I 
Sbjct: 259 ISTAGVP---ETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWII 314

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           ++ +  L+Q+G   S                G    +   +      LD   F   + AL
Sbjct: 315 DIDKTDLEQLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQAL 363

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            +      +A P +       A F +      K V   T    +    YG ++   P   
Sbjct: 364 AQKRRAAVVARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFA 421

Query: 324 SPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           +  +I L +  E          N  D+P        T   +P G ++++ G  +D     
Sbjct: 422 ARNQIELLLNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYE 481

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              IP+L  IP +G LF     N           P  + 
Sbjct: 482 SRKIPILGSIPFIGILFGYEGTNANNIVRVFLIEPREID 520


>gi|149200050|ref|ZP_01877075.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
 gi|149136808|gb|EDM25236.1| type 4 fimbrial biogenesis protein PilQ [Lentisphaera araneosa
           HTCC2155]
          Length = 864

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 66/371 (17%), Positives = 116/371 (31%), Gaps = 112/371 (30%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK--- 228
                 +    +++  L    E+Q+ ++    E+ +D + ++ F+ SI     G      
Sbjct: 491 KNTPAEHGKIDRIIKELA-PAENQIIIESKFYEINQDDIDELAFEWSIARIEDGSGFTDP 549

Query: 229 -----------------------------SFAADFGGKFVSEGG---------------- 243
                                         F+ D  G   S GG                
Sbjct: 550 NAGYIGRDPSYVGGVNGDPNGSLNDFLSDGFSLDKSGDLTSAGGDGLESAVRSLGSVLGA 609

Query: 244 ------DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                  F    +L   +F T++ A+++ +    L  P +T  +G +A      +  +  
Sbjct: 610 PGLSQGTFKFASILGDTTFNTLVSAIQQRSGEDVLNAPKVTTQNGHTAKIRVVQERYFPE 669

Query: 298 VSSS-------------------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVS 337
                                  +        D G VL  TP +    R I L+++ EV 
Sbjct: 670 EWEEPEVEQNSQGDGGSASTVTPSKPVFGEPRDIGAVLTVTPQIDPDQRVIELQLKPEVI 729

Query: 338 EPVIGVNAGDM--------------------------------PSYRVRKADTTVELPSG 365
           E V   N  ++                                P +  R  DTTV +  G
Sbjct: 730 EFVEYDNTFNVDMLVGQEVTFIPIIGNPFTVTVYTAFEQKFSMPIFESRTVDTTVRVWDG 789

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----P 421
            T+ L G++ ++    ++ IP L  IP LG  F ++     +  + I  T  L+     P
Sbjct: 790 ETLALGGMISENKTTYEDKIPYLGDIPFLGRFFTSNGERSVKQNLIIFVTARLIDPSGLP 849

Query: 422 VAMRDLS-RPD 431
           V+   LS  PD
Sbjct: 850 VSPGTLSGLPD 860


>gi|53722566|ref|YP_111551.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52212980|emb|CAH39018.1| Type III secretion system protein [Burkholderia pseudomallei
           K96243]
          Length = 620

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603


>gi|254264759|ref|ZP_04955624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254215761|gb|EET05146.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 620

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 318 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 376

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 377 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 425

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 426 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 483

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 484 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 543

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 544 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 603


>gi|134282090|ref|ZP_01768796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246619|gb|EBA46707.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 625

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|126457615|ref|YP_001076120.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|226195991|ref|ZP_03791577.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242310941|ref|ZP_04809958.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|254186863|ref|ZP_04893379.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|126231383|gb|ABN94796.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|157934547|gb|EDO90217.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|225931884|gb|EEH27885.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|242134180|gb|EES20583.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 625

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|217425200|ref|ZP_03456695.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391805|gb|EEC31832.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 624

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 322 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 380

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 381 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 429

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 430 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 487

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 488 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 547

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 548 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 607


>gi|282892150|ref|ZP_06300624.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281497951|gb|EFB40296.1| hypothetical protein pah_c209o019 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 852

 Score =  132 bits (332), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 112/321 (34%), Gaps = 44/321 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF------- 245
           +  V ++V + E R +   Q G     TG+++  + + +  +   F              
Sbjct: 529 KKMVQIEVLLFEKRLNRDNQFGLNLLRTGNAATNTHTTSVQWNNIFPVGASVVHPENAGV 588

Query: 246 ------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----- 294
                   K      +++     L     I+  A P++ AI+   A+     +       
Sbjct: 589 FEYLVSRTKTASGIPAYDFAYRFLLSQDDIQINASPSVVAINQTPATIEIAEEISVSTGI 648

Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG--------LRIQTEVSEPVIGVN 344
               T  + T   S     YG+ +   PT+     +         + ++T++    I  +
Sbjct: 649 FEIPTEGNVTLKDSFARARYGIKIEIIPTIHVREDMNDPEDPVDYVTLETDILFETINPS 708

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P    R     V +P   T+++ GL + ++   KE IP L +IP +G LF  ++  
Sbjct: 709 VDSRPDVTRRHITNQVRIPDQQTVIIGGLRRKNLSDSKESIPYLGEIPGIGKLFSITQLT 768

Query: 405 REETEIFIAATPFLVKPVA--------MRDLSRPDD------HYSVEDDAK--AFFFNRV 448
              TE+FI  TP ++   A             RP D           ++A+    F   +
Sbjct: 769 DSATEMFIFITPKIITEAAEDFDRIRCEEMQRRPGDIPGFLCRLQRAEEAEKNRIFQGYL 828

Query: 449 NKIYGPKEASEVEGQNYKGAI 469
             ++G      ++    +G  
Sbjct: 829 TMLFGRPPERCIQDCIPRGEY 849


>gi|237508896|ref|ZP_04521611.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|254185160|ref|ZP_04891749.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215752|gb|EDU12733.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|235001101|gb|EEP50525.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 625

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|67639412|ref|ZP_00438272.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|124382842|ref|YP_001025856.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10229]
 gi|126445673|ref|YP_001077941.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|254175971|ref|ZP_04882629.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|254359082|ref|ZP_04975354.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|126238527|gb|ABO01639.1| type III secretion system protein BsaO [Burkholderia mallei NCTC
           10247]
 gi|148028269|gb|EDK86229.1| type III secretion system protein BsaO [Burkholderia mallei
           2002721280]
 gi|160697013|gb|EDP86983.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           10399]
 gi|238519949|gb|EEP83414.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 625

 Score =  132 bits (331), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|46447532|ref|YP_008897.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46401173|emb|CAF24622.1| putative protein of the general secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 829

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 79/258 (30%), Gaps = 31/258 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--------VSEGGD 244
           +  V ++  + E         G      G     + +                  +  G 
Sbjct: 497 KKMVQIETLLFEKILTRENTFGLNLLKIGEHIAKNTNLTGATFNNIFPVKGEFTPANAGV 556

Query: 245 FSVK-----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV- 298
           F              +F+     L     ++  + P++  ++   A+          T  
Sbjct: 557 FDFLLSRKQTSSGIPAFDLAYRFLLSQDDVQINSNPSILTMNQTPATIAVNEDISINTGI 616

Query: 299 ------SSSTGATSVTTHDYGVVLHFTPTV----------LSPGRIGLRIQTEVSEPVIG 342
                   +T   + T   YG+ +   PT+               + L           G
Sbjct: 617 FEVETAKGTTLKDAFTRAQYGITISVKPTIHLNQHDTEDEWDFDYVTLETDITFDTIHAG 676

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
                 P    R     V++P G TI+L GL +      K+ IP L ++P LG LF  + 
Sbjct: 677 -GDRSRPDVTRRHITNQVQVPDGDTIILGGLRRKTTNDNKDSIPFLGELPGLGKLFSTNS 735

Query: 403 FNREETEIFIAATPFLVK 420
                +E+FI  TP +VK
Sbjct: 736 LKDSSSEMFIFITPHIVK 753


>gi|254301448|ref|ZP_04968892.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|157811001|gb|EDO88171.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
          Length = 625

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 323 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 381

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 382 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 430

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 431 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 488

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 489 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 548

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 549 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 608


>gi|83747847|ref|ZP_00944880.1| HrcC [Ralstonia solanacearum UW551]
 gi|207739230|ref|YP_002257623.1| hrp protein hrcc [Ralstonia solanacearum IPO1609]
 gi|83725494|gb|EAP72639.1| HrcC [Ralstonia solanacearum UW551]
 gi|206592603|emb|CAQ59509.1| hrp conserved protein hrcc [Ralstonia solanacearum IPO1609]
          Length = 567

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 89/245 (36%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGS----SSGPSKSFAADFGGKFVS------------- 240
           +  +I ++    L+Q+G    +  S     +G   +   +  G   S             
Sbjct: 325 ISASIIDITETALEQLGVDWRLHNSRLDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 384

Query: 241 --EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 385 TPAGGVLSAVIGGGSRYLMARISALQQTNQARVTASPKVATLDNTEAVMDNRQNFYVPVA 444

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 445 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 502

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   D   +  + IP LSKIP++GALFR  +   +  +     TP
Sbjct: 503 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 562

Query: 417 FLVKP 421
            ++ P
Sbjct: 563 RVITP 567


>gi|126442335|ref|YP_001063169.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126221826|gb|ABN85331.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 617

 Score =  132 bits (331), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 315 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 373

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 374 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 422

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 423 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 480

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 481 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 540

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 541 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 600


>gi|171060459|ref|YP_001792808.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
 gi|170777904|gb|ACB36043.1| type II and III secretion system protein [Leptothrix cholodnii
           SP-6]
          Length = 596

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 69/450 (15%), Positives = 144/450 (32%), Gaps = 95/450 (21%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-------- 80
             +     + ++   +     + +  ++ +          + ++D    + +        
Sbjct: 71  TLQLRDVPLGLALDSLAGSTGLRLIRDRDVRTDAR---STLFLTDARVGEALEVLLLSQQ 127

Query: 81  ----VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
                   RT  ++     +         G+  +   +L   + A +   L+  +   +I
Sbjct: 128 LAMRALDGRTALIYPNTPAK-----QRTYGELQVRTFVLRHTEAATMATLLKSLVKSQSI 182

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
             +  S+T+VL             ++L+E  ++ + R                      V
Sbjct: 183 VTDPRSNTLVLRDTP-------EVLQLAEQLIAINDRPSGD------------------V 217

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            ++V + EV R  L ++G           P+    A                        
Sbjct: 218 VIEVQLIEVNRQRLSRLGLSW--------PTSLSIATPASATTLGALRALGGDAWLASPL 269

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS---------- 306
              L+   +      +A P++ A   + A    G +    T   ++   S          
Sbjct: 270 ALGLNLQLQDIGATVIANPSVRARHKEKARLLIGDKVPVMTTQLASMGGSGASAAAPATT 329

Query: 307 ------------------------------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
                                         V   D G  L   P V + G + L I  E+
Sbjct: 330 APVTAAEGQAGQAEQAGQAGDGGTVMFSGSVQYIDVGFKLEVEPQVHADGDVDLDIDIEL 389

Query: 337 SEPVIGVNAGDMPSYR--VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S+    ++     +Y+  VR+A T++ L  G T  L GL++   +    G+P LS++P++
Sbjct: 390 SQITQTLDTDSGVAYQLGVRQAQTSMRLRDGETQWLGGLIRRQERAAMSGLPGLSQLPVI 449

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G LF     +  +TE+ +A TP + +PV  
Sbjct: 450 GRLFGLESQDTADTELVLAVTPRIARPVPP 479


>gi|8996028|gb|AAF82327.1|AF005744_3 YsaC [Yersinia enterocolitica]
          Length = 525

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/421 (14%), Positives = 134/421 (31%), Gaps = 65/421 (15%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISI----GLNKVIILQVPVDVQDVL 70
            LF S P +        A      I   ++  G ++++     LN+  I+      Q + 
Sbjct: 153 LLFVSGPPLYVELISAAAAYLDERIKQEDLASGGEVAVIPVKTLNQSPIVLYNQRGQSIT 212

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQA--NVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           +  P      + +       G N G     + +   +G+  +         +   +  L+
Sbjct: 213 I--PG-----MLTALNALFQGNN-GTTESTLTIQPKEGEPTIEAGFPAPPSVNGGDSALK 264

Query: 129 RFIADSN-----IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                       +     S+++V+ G   + +  +   +L  T  +              
Sbjct: 265 LAAGAKTSSPFSLVAYPDSNSLVVKG---SAEQIRYVRQLVHTLDNS------------- 308

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
                      QV L + I +V +  +  +G +                  G        
Sbjct: 309 ---------RSQVELSLWIIDVTQSKVDDLGVRWEA--------------GGIGVAGGSV 345

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
            F+   + D  +F   + A+ +    R ++ P +       A F +      +       
Sbjct: 346 TFNRSTLSDSKTFLAQIDAISKTGNARIVSRPVILTQENVPALFDNNTSFYARV--EGER 403

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADT 358
             S+    YG ++   P +     + + +  E        +        +P       +T
Sbjct: 404 VASLQQVTYGTMISVLPRLSGGSSVEMEVNIEDGGLNRDNSGKLADIAGLPEVNRTNINT 463

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              +    ++++ G  +D +++ +  IPLLS IP+LG LF+    N+++        P L
Sbjct: 464 VARIGRDKSLLIGGYTRDQVEEGETRIPLLSDIPLLGNLFKYRSHNQQKMIRIFLIQPRL 523

Query: 419 V 419
           +
Sbjct: 524 L 524


>gi|221200554|ref|ZP_03573596.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
 gi|221206234|ref|ZP_03579248.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221174246|gb|EEE06679.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2]
 gi|221179895|gb|EEE12300.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD2M]
          Length = 678

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
               V + VTI ++  D L  +G    +           G++     +     G   ++ 
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392

Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S  G    F                    T ++AL +    +  ++P + A+    
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
           A   +  Q   +        +S+ +   G  +  TP ++                + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +    V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           ++G LF+ +  +    E F   TP +V   +    D S  +       D       R   
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630

Query: 451 IYGPKEASEVEGQN 464
                  +      
Sbjct: 631 NDIAVPLTPRPLPG 644


>gi|221209590|ref|ZP_03582571.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
 gi|221170278|gb|EEE02744.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans CGD1]
          Length = 678

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
               V + VTI ++  D L  +G    +           G++     +     G   ++ 
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392

Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S  G    F                    T ++AL +    +  ++P + A+    
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
           A   +  Q   +        +S+ +   G  +  TP ++                + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +    V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           ++G LF+ +  +    E F   TP +V   +    D S  +       D       R   
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630

Query: 451 IYGPKEASEVEGQN 464
                  +      
Sbjct: 631 NDIAVPLTPRPLPG 644


>gi|161520290|ref|YP_001583717.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia multivorans ATCC 17616]
 gi|189353532|ref|YP_001949159.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
 gi|160344340|gb|ABX17425.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia multivorans ATCC 17616]
 gi|189337554|dbj|BAG46623.1| putative type II secretory pathway [Burkholderia multivorans ATCC
           17616]
          Length = 678

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
               V + VTI ++  D L  +G    +           G++     +     G   ++ 
Sbjct: 333 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 392

Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S  G    F                    T ++AL +    +  ++P + A+    
Sbjct: 393 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 452

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
           A   +  Q   +        +S+ +   G  +  TP ++                + + I
Sbjct: 453 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 510

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +    V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP
Sbjct: 511 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 570

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           ++G LF+ +  +    E F   TP +V   +    D S  +       D       R   
Sbjct: 571 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 630

Query: 451 IYGPKEASEVEGQN 464
                  +      
Sbjct: 631 NDIAVPLTPRPLPG 644


>gi|304311658|ref|YP_003811256.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
 gi|301797391|emb|CBL45611.1| Type III secretion pathway protein [gamma proteobacterium HdN1]
          Length = 598

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/281 (18%), Positives = 97/281 (34%), Gaps = 18/281 (6%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ 212
           + +   R V   +                + ++  L++     + ++ TI +V  D L++
Sbjct: 298 SEEGISRIVADPQRNAIIIRDKPELMPLYENLVKNLDVPSPV-IEIEATIIDVNTDKLRE 356

Query: 213 IGFQHSITGSSSGPSKS-----------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
            G     +   +                 A D         G  +   + +R  F   L+
Sbjct: 357 QGVDWGWSNGRTSAMTGEVDAKNNFLEVLAGDAISGLAQNAGMQAGTIIGNRNRFVARLN 416

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LER   ++  + P +  ++   A   S                 +     G VL  TP 
Sbjct: 417 LLEREGVVKVASRPKVVTLNDLEAVLESSRSVYVPV--QGAYDVDLFKVFSGTVLRVTPH 474

Query: 322 VLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           V++     +I L I  E    +   +  + PS       T   +    +++L GL + + 
Sbjct: 475 VINDVGTKKIRLIISAE-DGVIDEHSTNNAPSVTRNAVSTQAVIEGETSLLLGGLSRTES 533

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 +PLL  IP+LGALFR+     + +E     TP L+
Sbjct: 534 ITQVRKVPLLGSIPLLGALFRSEAKVVQNSERLFLITPRLL 574


>gi|53716325|ref|YP_106133.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
 gi|52422295|gb|AAU45865.1| type III secretion system protein BsaO [Burkholderia mallei ATCC
           23344]
          Length = 606

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 304 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 362

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 363 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 411

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 412 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 469

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 470 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 529

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 530 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 589


>gi|269118877|ref|YP_003307054.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
 gi|268612755|gb|ACZ07123.1| type II and III secretion system protein [Sebaldella termitidis
           ATCC 33386]
          Length = 368

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 11/231 (4%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + Q+ +K TI +   ++ +++G   S   ++       A+DF   F+      S    
Sbjct: 135 RPKKQIQIKATIIDTSDNLFERLGVDFSAGKNNDNK----ASDFLSSFIDGNLSLSGLLK 190

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSV 307
                    + AL+    I+  A P L  + G         + +     S+   T     
Sbjct: 191 TGGNFLGINIDALKENGDIKIEAMPVLLILEGSEGELRVTEEVIVGEKKSTIKDTEYIEP 250

Query: 308 TTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELP 363
              + GVV    P +   G    I L I +E+S   +  N   D  + +  K ++ V   
Sbjct: 251 VFAEAGVVFKIKPEIRGFGDSQEIILYIDSEISNFKLSSNFNADQGAKQKNKINSIVSFK 310

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +G ++ + GL ++  +  ++ +P+LSKIPILG+LFR  R N+E  +I+I  
Sbjct: 311 NGTSVFIGGLKQNVQKDSEKRVPVLSKIPILGSLFRYKRKNKEIRDIYIEI 361


>gi|313681848|ref|YP_004059586.1| pilus (msha type) biogenesis protein mshl [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154708|gb|ADR33386.1| pilus (MSHA type) biogenesis protein MshL [Sulfuricurvum kujiense
           DSM 16994]
          Length = 533

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/269 (21%), Positives = 99/269 (36%), Gaps = 34/269 (12%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------- 218
                        ++ L    + QV + V +  V        G   S             
Sbjct: 222 TATNSQMKRLDTYLDDLQKKMQTQVLIDVKMYSVIFSDASSTGIDWSQLYALQNIDLTFD 281

Query: 219 -ITGSSSGPSKSFAADFGGKFVSEGG------DFSVKGVLDRFSFETVLHALERATAIRT 271
            +     G   S   + G  F   G         SV  +  + S   V+  L+    + +
Sbjct: 282 YVNSKDVGKFTSTNLNTGTSFDEYGTDSVGRTGASVFRLGAKGSLNEVIKFLKTQGDVYS 341

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---------ATSVTTHDYGVVLHFTPTV 322
           ++ P +  ++ Q A  T+G +  YKT SS++             V++   GV+L  TP +
Sbjct: 342 ISNPKILTLNNQPALITAGTELFYKTKSSTSTTAASTTTSENEIVSSVFSGVLLDITPEI 401

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDD 377
              G I LRI   +SE    +N+ +      P    R+  + + +  G  ++L GL+   
Sbjct: 402 SKDGSITLRINPSISETASVINSSNEQRSMPPDLSRRQMSSVISVQDGSRVILGGLINTK 461

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                  +PLL  IP+LG LF+    N++
Sbjct: 462 NVNDTNKVPLLGDIPVLGYLFKKEGLNKK 490


>gi|172063770|ref|YP_001811421.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171996287|gb|ACB67205.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 680

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/449 (16%), Positives = 140/449 (31%), Gaps = 85/449 (18%)

Query: 72  SDPTKADVVVH-------SPRTMYLFGKN---VGQANVI--LIGHDGKQMLNLDILIERD 119
           ++   AD+          S  T+   GK     G A ++  L G  G             
Sbjct: 188 ANGAHADIRAFRLRYGWASDFTINRSGKEVTVPGVATILRRLFGKGGGT------NEPPS 241

Query: 120 IAHLEMTLRRFIADSNIRVE-MVSDTVVLHGMVR--TIQDSQRAVELSETFLSQSGRNQY 176
              L    R+    S + +     D   + G  R  +   +  A      F +  G +  
Sbjct: 242 STPLGQAARQVKLGSGLTIAVPRLDFPDISGGARQGSYGGADSAAGGFSPFSNAGGGDTL 301

Query: 177 ANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRDILKQIGFQHS 218
               +   +N + +                       V + VTI ++  D L  +G    
Sbjct: 302 PQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEINVTIIDINEDSLDSLGIDWR 361

Query: 219 IT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
           +           G +     +     G   ++ G   S  G    F              
Sbjct: 362 LHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSETGQTGAFLPTGIALTASIGGS 421

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                 T ++AL +    +  ++P + A+    A   +  Q   +        +S+ +  
Sbjct: 422 LRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVT 479

Query: 312 YGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            G  +  TP ++                + + I  +    V G    ++P  + R   T 
Sbjct: 480 TGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTK 539

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +  G ++++AG   D+++  K G+P LS IP++G LF+ +  +    E F   TP +V
Sbjct: 540 TMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 599

Query: 420 K-----PVAMRDLSRPDDHYSVEDDAKAF 443
                       ++   D  +    A  +
Sbjct: 600 TTASMYAPDGSPVNPGADGPADPSGASMY 628


>gi|238755999|ref|ZP_04617324.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
 gi|238705788|gb|EEP98180.1| Possible type III secretion system protein [Yersinia ruckeri ATCC
           29473]
          Length = 558

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 83/232 (35%), Gaps = 21/232 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I ++ +  L ++G + SI    +G                G  F+   + +
Sbjct: 299 RRQVELSLWIIDISKKKLDEVGVRWSIGDLKAGGG--------------GIAFNQSTLSN 344

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   + A+ R    + ++ P +       A F +      +          +    Y
Sbjct: 345 SAKFLARVDAISRTGDAQIVSRPIVLTQENIPALFDNNSSFYARL--EGERVAKLEQVTY 402

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTVELPSGGT 367
           G ++   P +    ++ + +  E   P    +      G +P        T   +    +
Sbjct: 403 GTMVSVLPRISQGDQVEMDVNIEDGSPGRAGSNDVDQIGGLPIVNRTNISTVARIAKDSS 462

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +++ G  +D +++  E IPLL  IP LG LF     N+++        P L+
Sbjct: 463 LLIGGYTRDQLEESDEKIPLLGSIPYLGRLFSYRSSNQQKMIRVFLIQPRLL 514


>gi|256846641|ref|ZP_05552097.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
 gi|256717861|gb|EEU31418.1| general secretion pathway protein D [Fusobacterium sp. 3_1_36A2]
          Length = 515

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +           ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|260888944|ref|ZP_05900207.1| hypothetical protein GCWU000323_00103 [Leptotrichia hofstadii
           F0254]
 gi|260861391|gb|EEX75891.1| putative general secretion pathway protein D [Leptotrichia
           hofstadii F0254]
          Length = 399

 Score =  131 bits (329), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 124/311 (39%), Gaps = 40/311 (12%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
             R++  +   L  F       V  + + V+  G    +++ +R ++  +          
Sbjct: 117 EYRNVKDITEALNGFF---GFEVIGIDNKVIFSGDESKVEEMKRIIKSLD---------- 163

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234
                            ++Q+ +K TI +   ++ +++G   SI  ++S  +  +  A F
Sbjct: 164 ---------------KEKEQIIIKGTIIDTSSNLFERLGIDWSINSNNSNATKDNLVAKF 208

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               VS    FS  G      F    + L+    IR  A PTL  +  +        + L
Sbjct: 209 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 264

Query: 295 YKTVSSSTGATSVT---THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
                ++   T        + G+V    P    +    +I L+I TE+S   +  +    
Sbjct: 265 VGEKKTTKKDTEYVEPIFSEAGIVFRINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 324

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             + +  +  TT+ L +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE 
Sbjct: 325 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIIGPLFKYRRTNREM 384

Query: 408 TEIFIAATPFL 418
            +I+I     +
Sbjct: 385 RDIYIEIEAVI 395


>gi|119897096|ref|YP_932309.1| general secretion pathway protein D [Azoarcus sp. BH72]
 gi|119669509|emb|CAL93422.1| general secretion pathway protein D [Azoarcus sp. BH72]
          Length = 580

 Score =  131 bits (328), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/306 (21%), Positives = 117/306 (38%), Gaps = 34/306 (11%)

Query: 156 DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
           D+   V   E+ +         +S   + ++ +  A   QV ++ TI EV      Q G 
Sbjct: 260 DADAVVSNRESGVLVVRATARQHSRIAEFIDAVQRAARRQVMIEATIVEVALGDEYQQGI 319

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                G+ +    +  +             S          +  L  LE   + + L+ P
Sbjct: 320 DWRRLGNPNWRVAARGSGDANALTPTLSYLS-------DRLDVRLDLLETFGSAKILSSP 372

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGA------------TSVTTHDYGVVLHFTPTVL 323
            L+ ++ Q+A      + +Y  V +ST              T+  +   G+V+  T  V 
Sbjct: 373 RLSVLNNQTAMLKVVEEVVYFLVDASTTQYDDADREKTTATTTPQSVSVGMVMALTAQVS 432

Query: 324 SPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           + G I L ++  +S          P +G     +P  R R+ ++ + L SG T VL GL+
Sbjct: 433 AGGEIILNVRPTISSISGFKDDPNPSLGSIPNRVPQIRTREIESVLRLRSGETAVLGGLI 492

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDLS----- 428
           +D +      IPLL  +P+LG +F +       +E+ I   P +V  P    D +     
Sbjct: 493 EDKVDYDTGRIPLLGSLPLLGEVFSHRDNAVRRSELVIFLRPVVVEDPALGGDYAELRQH 552

Query: 429 RPDDHY 434
            PD  +
Sbjct: 553 LPDAGF 558


>gi|304321270|ref|YP_003854913.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
 gi|303300172|gb|ADM09771.1| general secretion pathway protein D [Parvularcula bermudensis
           HTCC2503]
          Length = 736

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 39/176 (22%), Positives = 73/176 (41%), Gaps = 5/176 (2%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTH 310
           +  +L AL+  +    L  P++  +  +  +   G +    T  +       G   +   
Sbjct: 484 YGVLLSALQSDSQSNVLQVPSIVLLDNEEGTIQVGQEVPVVTGEAVGSDFQGGFRQIERK 543

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           + G +L   P + +   + L++  EVS           P       D TV    G T+VL
Sbjct: 544 NIGNILQVKPQITAGNTVQLKLNLEVSSLGAFAPDAQGPITNESILDLTVSAEDGQTLVL 603

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            GL+  D +Q +  +P+L  IP+LG LF+    + +E+ + I   P +++     D
Sbjct: 604 GGLVDKDRRQTESKVPVLGDIPLLGNLFKGQAQSDQESTLMIFIRPTILRDAQAAD 659



 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/381 (12%), Positives = 114/381 (29%), Gaps = 37/381 (9%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI--SIGLNKVIILQVP---VDV 66
            +  L +     + + PI E+N+ +I  +   + +   +   I ++K ++  +P      
Sbjct: 149 AAANLRALAGENSLVTPIVESNSLIIVDTPNNVSRLLSVVDRIDVDKSVVRSIPLDNAAA 208

Query: 67  QDVLVSDPTKAD--------------VVVHSPRTMYLFGKNVGQANVI-----LIGHDGK 107
            +V  +     +              V V +  ++ L G+    + ++     L      
Sbjct: 209 SEVAATLSEIVNRPGGQGSRQSSVSIVAVDASNSVVLRGEPEEISRLVPIIRELDSPSRS 268

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD------TVVLHGMVRTIQDSQRAV 161
           Q+    I +        + L + + +  I V +  +      T    G   +   +    
Sbjct: 269 QVALDTIYLNHANGAQIVPLIQALLNEPITVAVSGEDDEGRVTTTQSGRQNSGPRASSIA 328

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
             + T               + +++ L+I    QV ++  I E+     +++G Q+   G
Sbjct: 329 FHAPTNSLVIKAPPETQRLIRGIVSRLDIRRP-QVLIEAVIVEIADTTARELGVQYVSGG 387

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL---- 277
           +    S +  +      VS  G        D     T +        +      +     
Sbjct: 388 AGLPLSAASFSSTRPNVVSAAGAALFLNEQDDNDNVTTITTTSANGDVTVTEGQSYDAND 447

Query: 278 --TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
              AI+GQ           +       G  +     YGV+L    +      + +     
Sbjct: 448 PDLAIAGQLVEAAVQELLNFNGFLFGAGGETGDGGVYGVLLSALQSDSQSNVLQVPSIVL 507

Query: 336 VSEPVIGVNAGDMPSYRVRKA 356
           +      +  G        +A
Sbjct: 508 LDNEEGTIQVGQEVPVVTGEA 528


>gi|91203965|emb|CAJ71618.1| hypothetical protein kustc0873 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 844

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 56/267 (20%), Positives = 96/267 (35%), Gaps = 31/267 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           + V+  L  +   QV ++     V  + L+ IG   +   S +    + AAD  G   S 
Sbjct: 553 EDVLASLRTSQNLQVNIEARFITVTDEFLEDIGTDITRFFSDNTSVSTGAADIAGDLGS- 611

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT---AISGQSASFTSGGQHLYKTV 298
            G      +    + +  L A++ +     L  P +T      G  A   +       TV
Sbjct: 612 -GIDLNFAIFGNSALKGFLKAVQESKGSEVLTSPRITLSNTQRGNIAVLQTRNYIQSTTV 670

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV-----------SEPVIGVNAG 346
                   + T   G      P V +  + + L +   V           S    GV+ G
Sbjct: 671 EDGIVTPVIGTVPEGTTFDVRPIVSADRKFVYLEVTPSVFAIEEIESFTFSGLSEGVSVG 730

Query: 347 D--------------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
                          +P   V +   TV +P  GT+++ GL     +    G+P+LSKIP
Sbjct: 731 GGDGTTYIPPEQTIQLPKLNVSQVSVTVYVPDKGTLMIGGLGSLSNKDETSGVPVLSKIP 790

Query: 393 ILGALFRNSRFNREETEIFIAATPFLV 419
           I+  LF   +  R ++ + I   P ++
Sbjct: 791 IIKRLFTRDQKTRNKSNLIILLKPTII 817


>gi|76663415|emb|CAE47791.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 510

 Score =  131 bits (328), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 75/419 (17%), Positives = 156/419 (37%), Gaps = 35/419 (8%)

Query: 23  VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVH 82
           + +  P  E  A +            +  I + K  + +V  ++   L+ D    ++ + 
Sbjct: 88  IMRFTPKSEGFATLTIHDKRNGKIVAEFRIDVKKSKLDKVVREM-RALLGDIEGINIKIV 146

Query: 83  SPRTMY----LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
           + R +     L  K++ +   ++    G Q  +L  L       +   + R I +  I V
Sbjct: 147 NNRVVVDGQILLPKDLARIYNVVQ-QFGDQASSLVTLSPLAQKKIAEFIARDINNPEIEV 205

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ--------SGRNQYANSSSKKVMNLLNI 190
             V++ ++L G   + ++S+RA  +++T+L           G  +    ++  V+NL+ I
Sbjct: 206 RAVNEKIILQGWANSDEESKRAEIIAKTYLPDIVIEAAEEKGVIKKRKPANDGVINLIQI 265

Query: 191 A------GEDQVTLKVTIAEVRRDILKQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGG 243
                      + L V   E+ +D  K   FQ +   G +S  +     D  G  +S   
Sbjct: 266 KAAPPAAPAKMIQLVVHYVELNKDYSKAFKFQFTPELGDNSTMTFQTGGDSPGGVISSIT 325

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      +    L+  ++    R L   +L    G+           Y  V    G
Sbjct: 326 GTV-------SNLLPKLNWAKQHGHARVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDG 377

Query: 304 ATSVTTHDYGVVLHFTPTVLSP--GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                  + G+V   TP +L    G + + +  +VS   +G      P     +  + V 
Sbjct: 378 TQGTAFAEVGIVTSITPQLLGEKSGSVRMDMAFKVSSL-LGNTPSGAPITSANEMSSAVT 436

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +    +  + GL+++         P   K PI+ +L+ +  F +++++  +  TP +VK
Sbjct: 437 VRDRQSAAVGGLIRNSTSTGYNR-PAGQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 492


>gi|226356752|ref|YP_002786492.1| secretin [Deinococcus deserti VCD115]
 gi|226318742|gb|ACO46738.1| putative Secretin precursor (GSP D family protein) [Deinococcus
           deserti VCD115]
          Length = 690

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 69/433 (15%), Positives = 145/433 (33%), Gaps = 44/433 (10%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKV---IILQVPVDVQDVLV 71
            L ++     K+  + +    VI     ++     +   +++    +++     VQ V  
Sbjct: 275 ALLAAQYPGLKVTAVGQTGQLVITGPQNQLDAALTLLGQVDRPTPPVVVVKDQTVQRVF- 333

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVIL-IGHDGKQMLNLDILIERDIAHLEMTLRRF 130
                    + +     +     G  +  L        + N  ++               
Sbjct: 334 --------TLVNSSAEEVKATLEGTLSRDLSTNTGSNLVPNATLINPLTGQPYTTGPLAN 385

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
           +  S       +          +   +  AV +     + +   +       +V  L+  
Sbjct: 386 VPVSAAAAAPGAAPATTGAAAPSTPAAATAVSIIADKRTNTLIVRGTAEQVAQVAELIPQ 445

Query: 191 --AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
             +   Q+ ++V I E+     + +G            S                 F   
Sbjct: 446 LDSRVPQINVQVRIQEITESAARSLGVNLKAGFGGFNVSTGAGG--------LSAAFDPT 497

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-------------- 294
             L  F+    L+ L+     +++ + T+T  SGQ A  ++                   
Sbjct: 498 QSLVGFNLGATLNTLQNQGLSKSIYDGTITMQSGQRALGSTTDAQNASSTAAASIKSGGR 557

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP- 349
                   ++         DYGV L F +P V   G I LR++ +V++    +NA  +P 
Sbjct: 558 LEINIPSQAANVPAIQRQIDYGVNLDFFSPQVAPDGTITLRVRGQVNDLQTAINASTIPN 617

Query: 350 --SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
              +   +A TT+   +G T++L+GLL         G+P LS IP++GALF       ++
Sbjct: 618 LLQFTNSEAQTTLTFKNGETLLLSGLLATKESSTNSGVPFLSSIPVVGALFGQQTTRSQK 677

Query: 408 TEIFIAATPFLVK 420
           T++ +  T  +++
Sbjct: 678 TQLLVVITGNVLR 690


>gi|330937041|gb|EGH41129.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 364

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 41/198 (20%), Positives = 70/198 (35%), Gaps = 6/198 (3%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            + +  +  GG  + + G  S   + +   F   LHALE   +   +  P++  +  Q A
Sbjct: 6   WNFNAGSVNGGANMFDAGTSSTLFIQNAGKFAAELHALEGNGSASVIGNPSILTLENQPA 65

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIG 342
                          S    ++     G  L  TP  L      ++ L +  E  +  I 
Sbjct: 66  VIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIEDGQIDIS 123

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNS 401
                 PS R     T   +   G++V+ G    +       +PLL  IP +G  LF++ 
Sbjct: 124 DINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGKLLFQSR 183

Query: 402 RFNREETEIFIAATPFLV 419
                + E     TP L+
Sbjct: 184 SRELSQRERLFILTPRLI 201


>gi|238763779|ref|ZP_04624738.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
 gi|238698081|gb|EEP90839.1| Protein transporter HofQ [Yersinia kristensenii ATCC 33638]
          Length = 425

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 45/207 (21%), Positives = 84/207 (40%), Gaps = 6/207 (2%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KSFAADFGGKFVSEGGDFSVKGV 250
            QV L   I  + R+ L+++G +  +       +     F  +      +    F+V  +
Sbjct: 217 QQVQLAAHIVTISRENLQELGVRWGMGEPQPTSALRMSDFNVNLPLPTSAVSAGFNVARI 276

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
             R     +  ALE+   +  +A P L     Q+AS   G    Y       G T++   
Sbjct: 277 GGRLLELEL-SALEQENQVDIIASPRLVTSHQQTASIKQGSDIPYTVSRGKKGTTTIEFK 335

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTI 368
           +  + +  TP +L  G+I L ++   + P + +     +      ++  T + +  G TI
Sbjct: 336 EAVLGMEVTPKILRNGKITLNLKISHNMPGMAMKRGDSETLLIDKQEIKTQITVNDGETI 395

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILG 395
           VL G+ +    Q    +P+L+ IP LG
Sbjct: 396 VLGGIFQQKNSQGVNKVPMLADIPWLG 422


>gi|42521752|ref|NP_967132.1| putative pilus assembly transmembrane protein [Bdellovibrio
           bacteriovorus HD100]
 gi|39574282|emb|CAE77786.1| putative pilus assembly transmembrane protein [Bdellovibrio
           bacteriovorus HD100]
 gi|51468906|emb|CAE47779.1| pilus assembling protein [Bdellovibrio bacteriovorus]
          Length = 509

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 71/393 (18%), Positives = 150/393 (38%), Gaps = 35/393 (8%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY----LFGKNVGQANVILIGH 104
           +  I + K  + +V  ++   L+ D    ++ + + R +     L  K++ +   ++   
Sbjct: 113 EFRIDVKKSKLDKVVREM-RALLGDIEGINIKIVNNRVVVDGQILLPKDLARIYNVVQ-Q 170

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
            G+Q  +L  L       +   + R I +  I V  V++ ++L G   + ++++RA  ++
Sbjct: 171 FGEQASSLVTLSPLAQKKIAEFIARDINNPEIEVRAVNEKIILQGWANSDEEAKRAEIIA 230

Query: 165 ETFLSQSGRNQYANS--------SSKKVMNLLNI------AGEDQVTLKVTIAEVRRDIL 210
           +T+L                   ++  V+NL+ I           + L V   E+ +D  
Sbjct: 231 KTYLPDIVIEAAEEKGVIKKRRPANDGVINLIQIKEAPAKPPSKMIQLVVHYVELNKDYS 290

Query: 211 KQIGFQHSIT-GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           K   FQ +   G +S  +     D  G  +S              +    L+  ++    
Sbjct: 291 KAFKFQFTPELGDNSQMTFQTGGDSPGGVISSITGTV-------SNLLPKLNWAKQHGHA 343

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--GR 327
           R L   +L    G+           Y  V    G       + G+V   TP +L    G 
Sbjct: 344 RVLESTSLIVEDGKKGEIKQVTNQPYP-VIGKDGTQGTAFAEVGIVTAITPVLLGEKSGS 402

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + + +  +VS   +G      P     +  +TV +    +  + GL+++         P 
Sbjct: 403 VHMEMAFKVSSL-LGNTPSGAPITSANEMTSTVTVRDRQSAAVGGLIRNSTSTGYNR-PA 460

Query: 388 LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             K PI+ +L+ +  F +++++  +  TP +VK
Sbjct: 461 GQKNPII-SLYASKDFIKQQSQFVVFVTP-IVK 491


>gi|254302334|ref|ZP_04969692.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
 gi|148322526|gb|EDK87776.1| possible outer bacterial membrane secretin family protein
           [Fusobacterium nucleatum subsp. polymorphum ATCC 10953]
          Length = 515

 Score =  130 bits (327), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 47/241 (19%), Positives = 92/241 (38%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV +   I ++  ++ +++GF      +     ++             G  S   ++ 
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAIILGKAGLNGVGSTVNIVR 326

Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG---- 303
           +F+       T ++ LE    +   + PTL   SG+   F    + +    S        
Sbjct: 327 QFNNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVIVGVKSHRDDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKRNVLNLKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|170698153|ref|ZP_02889232.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136918|gb|EDT05167.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 619

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 106/274 (38%), Gaps = 17/274 (6%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+  + +   RAV   +T                 +++ L+I+ + Q+ L + I ++++
Sbjct: 324 TGIAVSAETDVRAVAYPDTNSIVLTGPLDKVQDMTSLIHSLDIS-KRQIQLSLWIIDIKK 382

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L Q+G        S+  S SF                    LD   F   + AL++  
Sbjct: 383 SCLDQLGVNWQGVFGSNRISGSFNGADNST------------TLDGPKFLVSVMALQQKG 430

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
               ++ P L       A F +      K +     A S+    YG +++  P +   G 
Sbjct: 431 DATIVSRPVLLTQENMPAVFDNNQTFYAKLI--GERAVSLEHVTYGTMINVLPRLTDNGS 488

Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + +++  E        +A   +P     + DT   +P   ++++ G  +DD ++ +  I
Sbjct: 489 EVEMQVDVEDGNATDTNDAASPLPLVDRTEIDTVARVPREKSLLIGGNTRDDARRHRYRI 548

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           P L+ +P++G LFR    + ++        P ++
Sbjct: 549 PGLASLPLIGGLFRWRTESHDQVVRVFLIQPKVL 582


>gi|170699432|ref|ZP_02890477.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170135688|gb|EDT03971.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 680

 Score =  130 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/344 (17%), Positives = 114/344 (33%), Gaps = 59/344 (17%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
           + ++N L+      V + VTI ++  D L  +G    +           G +     +  
Sbjct: 326 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQY 384

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-----------------FETVLHALERATAIRTLAE 274
              G   ++ G   S  G    F                    T ++AL +    +  ++
Sbjct: 385 NGAGNPPLTFGIGTSETGQTGTFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 444

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
           P + A+    A   +  Q   +        +S+ +   G  +  TP ++           
Sbjct: 445 PKVLALDNTEAILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 502

Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K
Sbjct: 503 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNK 562

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDD 432
            G+P LS IP++G LF+ +  +    E F   TP +V           PV        D 
Sbjct: 563 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGGPADP 622

Query: 433 H----YSVEDDAKAFFFNRVNKI---YGPKEASEVEGQNYKGAI 469
           +    Y   D+  A            +GP         +    +
Sbjct: 623 NGASMYRPPDNDIAVPLTPAPLPGTKFGPPALPPPSSDSASRPV 666


>gi|189424531|ref|YP_001951708.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420790|gb|ACD95188.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 792

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 69/454 (15%), Positives = 140/454 (30%), Gaps = 88/454 (19%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD----VLVSDPTK---- 76
            L  +  + A  +   D+++   K +++  N   + ++   +        V DP      
Sbjct: 165 ALQRVAGSPATSLAGRDLQLTSVKPLTLKANGTRLKELFSTITRHSGINFVFDPDFKDQP 224

Query: 77  ----------------------ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
                                  D  V +  T+ ++ ++  +             L    
Sbjct: 225 ATLTLENSGFRQALDLLAALHRIDYAVINESTVLIYPQSAEKTK-----QYQDMQLRTFH 279

Query: 115 LIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
           L   D       +R  +    + +   ++ +V+          ++ +E  +         
Sbjct: 280 LNHLDAKKAANLIRTMLQVRRLYINEDANALVVRDTSDVTDVIEKILEAHDL-------- 331

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
                             E +V L V + E+       +G   S      G         
Sbjct: 332 -----------------PEAEVVLDVEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELL 374

Query: 235 GGKFVSEGG-----------------DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPT 276
                                      FS+       +      +  +       L+ P 
Sbjct: 375 ATTLKDTTSTTSTTVTTDATIKNLVKAFSINSFGGYVTVPNAQYNFGKTLANGEVLSNPK 434

Query: 277 LTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +   + + A F  G +          + +T   +V   D GV ++  PT+     + +++
Sbjct: 435 IRVKNKEKAKFNVGTRVPITTTTMATTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKL 494

Query: 333 QTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
             EVS  +     G       + +   R  DT + L  G T V+ GL+       K+ I 
Sbjct: 495 GLEVSSIISRETVGGKDSATTVVTIGTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIF 554

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           LL  IP++G L  NS+ + ++TE+ +A TP LV+
Sbjct: 555 LLGDIPLIGPLLSNSKTDNDKTELILAITPRLVR 588


>gi|320656547|gb|EFX24443.1| type III secretion system outer membrane pore InvG [Escherichia
           coli O55:H7 str. 3256-97 TW 07815]
          Length = 567

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 46/271 (16%), Positives = 86/271 (31%), Gaps = 18/271 (6%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
             ++     ++    +        +     +K++  L+I     + L + I ++ +  L+
Sbjct: 264 APETDDIQIIAYPDTNSLLVKGTVSQVDFIEKLVATLDIPKRH-IELSLWIIDIDKTDLE 322

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           Q+G   S                G    +   +      LD   F   + AL +      
Sbjct: 323 QLGADWSG-----------TIKIGSSLSASFNNSGSISTLDGTQFIATIQALAQKRRAAV 371

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           +A P +       A F +      K V   T    +    YG ++   P   +  +I L 
Sbjct: 372 VARPVVLTQENIPAIFDNNRTFYTKLVGERTAE--LDEVTYGTMISVLPRFAARNQIELL 429

Query: 332 IQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +  E          N  D+P        T   +P G ++++ G  +D        IP+L 
Sbjct: 430 LNIEDGNEINSDKTNVDDLPQVGRTLISTIARVPQGKSLLIGGYTRDTNTYESRKIPILG 489

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
            IP +G LF     N           P  + 
Sbjct: 490 SIPFIGKLFGYEGTNANNIVRVFLIEPREID 520


>gi|296328369|ref|ZP_06870896.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154548|gb|EFG95338.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 515

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +         T ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 YSEPVFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|134294019|ref|YP_001117755.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia vietnamiensis G4]
 gi|134137176|gb|ABO58290.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia vietnamiensis G4]
          Length = 679

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198
           +  A      F +  G +      +   +N + +                       V +
Sbjct: 282 ADSAAGGISPFSAGGGGDALPQIVADPAINAVIVRDLPENMYRYQSLIDQLDERPRIVEI 341

Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            VTI ++  D L  +G    +           G +     +     G   ++ G   S  
Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGASET 401

Query: 249 GVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G    F                    T ++AL +    +  ++P + A+    A   +  
Sbjct: 402 GQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339
           Q   +        +S+ +   G  +  TP ++                + + I  +    
Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRHAAAVSGTPQSVMMSIDIQDGNI 519

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579

Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439
            +  +    E F   TP +V           PV     +  D +    Y   D+
Sbjct: 580 YTDKSGNHMERFYLLTPRVVTNASMYAPDGSPVNPGADAPADPNAMSMYRPPDN 633


>gi|115358977|ref|YP_776115.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115284265|gb|ABI89781.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 681

 Score =  130 bits (326), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/354 (16%), Positives = 114/354 (32%), Gaps = 73/354 (20%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTL 198
           +  A      F +  G +      +   +N + +                       V +
Sbjct: 282 ADSAAGGFSPFSNAGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLINQLDERPRIVEI 341

Query: 199 KVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
            VTI ++  D L  +G    +           G +     +     G   ++ G   S  
Sbjct: 342 NVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNPLNGNTQYNGAGNPPLTFGIGTSET 401

Query: 249 GVLDRFS-----------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
           G    F                    T ++AL +    +  ++P + A+    A   +  
Sbjct: 402 GQTGAFLPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLT 461

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEP 339
           Q   +        +S+ +   G  +  TP ++                + + I  +    
Sbjct: 462 QFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNI 519

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+
Sbjct: 520 VPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFK 579

Query: 400 NSRFNREETEIFIAATPFLVK----------PVAMRDLSRPDDH----YSVEDD 439
            +  +    E F   TP +V           PV     +  D +    Y   D+
Sbjct: 580 YTDKSGNHMERFYLLTPRVVTTAAMYAPDGSPVNPGAGAPADPNGASMYRPPDN 633


>gi|237743199|ref|ZP_04573680.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
 gi|229433495|gb|EEO43707.1| general secretion pathway protein D [Fusobacterium sp. 7_1]
          Length = 423

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +           ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414

Query: 412 I 412
           I
Sbjct: 415 I 415


>gi|237741044|ref|ZP_04571525.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
 gi|229431088|gb|EEO41300.1| general secretion pathway protein D [Fusobacterium sp. 4_1_13]
          Length = 423

 Score =  130 bits (326), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 234

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +           ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414

Query: 412 I 412
           I
Sbjct: 415 I 415


>gi|38639336|gb|AAR25802.1| BcscC [Burkholderia multivorans E243]
          Length = 504

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 103/314 (32%), Gaps = 43/314 (13%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSE 241
               V + VTI ++  D L  +G    +           G++     +     G   ++ 
Sbjct: 159 RPRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGANPLNGNTQYNGAGNPPLTF 218

Query: 242 GGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAEPTLTAISGQS 284
           G   S  G    F                    T ++AL +    +  ++P + A+    
Sbjct: 219 GIGASESGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLHSKPKVLALDNTE 278

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRI 332
           A   +  Q   +        +S+ +   G  +  TP ++                + + I
Sbjct: 279 AILENLTQFYVQVQGYQD--SSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGRPESVMMSI 336

Query: 333 QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             +    V G    ++P  + R   T   +  G ++++AG   D+++  K G+P LS IP
Sbjct: 337 DIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIP 396

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNK 450
           ++G LF+ +  +    E F   TP +V   +    D S  +       D       R   
Sbjct: 397 LIGNLFKYTDKSGNHMERFYLLTPRVVSSASMYAPDGSPVNPGVDAPADPNGVSMYRPPD 456

Query: 451 IYGPKEASEVEGQN 464
                  +      
Sbjct: 457 NDIAVPLTPRPLPG 470


>gi|260495319|ref|ZP_05815446.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
 gi|260197097|gb|EEW94617.1| general secretion pathway protein D [Fusobacterium sp. 3_1_33]
          Length = 515

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +         T ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|291297113|ref|YP_003508511.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
 gi|290472072|gb|ADD29491.1| type II and III secretion system protein [Meiothermus ruber DSM
           1279]
          Length = 509

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 59/341 (17%), Positives = 116/341 (34%), Gaps = 40/341 (11%)

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           I + R        +++  A S+ R   ++D +   G   T Q   +          Q+  
Sbjct: 180 IDVPRATTATIPVVQKSFALSHARATELADVL---GKAITAQAQGQTTPAQGQGQGQAQP 236

Query: 174 NQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGF 215
                  ++   N L + G                    QV L++ +  V  ++++ +G 
Sbjct: 237 APQVTVVAEPRTNTLIVTGTAEQIALAERLIPNLDRPVQQVQLQIRVQAVSGEVIRNLGI 296

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +       +  +   +      F +          L   +   VL ALE+    R L++ 
Sbjct: 297 KWETVSGGNLIASFLSTGLNLIFDA-------TRSLASLNIRAVLDALEKQQLSRRLSDA 349

Query: 276 TLTAISGQSASF-----------TSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
            +       A                         +     +V   DYG+++   P + +
Sbjct: 350 NVLVEDNYGADTSDLRATGAKGAEIKVGGRLLIPITIGDQITVREFDYGLLVRVRPQIST 409

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            G I L + T+ +                +   + + +  G T+VL GL++      +  
Sbjct: 410 DGNILLEVFTQ-TGGDPADGPAGSIRIPQQSTLSKLRIRDGQTVVLGGLIQKVTDTSETK 468

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           IPLL  IP+LG LF+    + ++ E+ +  T  +VK  A R
Sbjct: 469 IPLLGDIPLLGELFKQRTSSIKDDELIVIITGNIVKDSAQR 509


>gi|256027610|ref|ZP_05441444.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 515

 Score =  129 bits (325), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 267 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +         T ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 327 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 387 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 446

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 447 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 506

Query: 412 I 412
           I
Sbjct: 507 I 507


>gi|167743212|ref|ZP_02415986.1| Type III secretion system protein [Burkholderia pseudomallei 14]
          Length = 309

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 292


>gi|324014333|gb|EGB83552.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 60-1]
          Length = 193

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 44/194 (22%), Positives = 85/194 (43%), Gaps = 8/194 (4%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
               +        G+ D       L A++  +  + ++ P +   SGQ+   + G    +
Sbjct: 1   ALGSALSTAGGSFGIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPF 60

Query: 296 KTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
            T   +           ++  HD GV L  TP V+  G++ L I T          A D+
Sbjct: 61  ITGKVTGESAGVNNPFQTIERHDVGVSLKVTPVVMGNGQLVLTIDTRADSISNDDQASDI 120

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
                R+  TTV++  G T++L GL+       +  +P++SKIP++G +F +   + E+ 
Sbjct: 121 -ITNQRQIQTTVQIKDGQTLLLGGLIDSSFSNAERSVPVISKIPLIGWIFSSKADSNEQR 179

Query: 409 EIFIAATPFLVKPV 422
            ++I  T  +++P+
Sbjct: 180 IMYILLTAHIIRPL 193


>gi|171915470|ref|ZP_02930940.1| type II and III secretion system protein:NolW-like
           [Verrucomicrobium spinosum DSM 4136]
          Length = 896

 Score =  129 bits (325), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 50/253 (19%), Positives = 94/253 (37%), Gaps = 24/253 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ L   I E         G     T  S G     A       V         G+
Sbjct: 516 KRPRQILLTAVIGEFTLGNDFSFGVDWLHTLESVGKDGLIAGALNTSGVEPVDFTKFGGI 575

Query: 251 LD-------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ----- 292
            D                    L  LE+      L +PT+TA++ + A+   G       
Sbjct: 576 EDFAAPQGLAVYGHIGKHLNVFLRTLEQNKRFHVLQKPTVTALNHEEANIFIGQDLAIAG 635

Query: 293 ----HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAG 346
                   TV+ ++ A++       + L  TP + +   + L  +   ++      ++  
Sbjct: 636 QTLTTGGTTVNGASVASTTDYVKVRLELRITPHIFANDEVRLDFEQTNNDVSGFTEISGN 695

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            +P+  V+    T+ +P+  T++L GL+ +   + K G+P L ++P+L  LF N+  ++E
Sbjct: 696 RVPNLSVQGMRNTIIVPNRSTVLLGGLITERDSKNKNGLPFLVRVPVLKHLFGNTSNSKE 755

Query: 407 ETEIFIAATPFLV 419
             E+ I   P ++
Sbjct: 756 RRELMIFVQPQIL 768


>gi|157364734|ref|YP_001471501.1| type II and III secretion system protein [Thermotoga lettingae TMO]
 gi|157315338|gb|ABV34437.1| type II and III secretion system protein [Thermotoga lettingae TMO]
          Length = 385

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 50/227 (22%), Positives = 94/227 (41%), Gaps = 5/227 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV + V ++EV +D L +IG      G + G ++ +  D+        G  SV+  + 
Sbjct: 164 PRQVKISVVVSEVSKDNLGEIGLD--QIGYTFGANQQYNEDWTAVLGLISGVLSVQTDVF 221

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  L ALE+    +  A+P +     + A    G + +          T+ T    
Sbjct: 222 GT-IVARLRALEQDQKAKIKADPWIIVQENKPARLFVGQREIIILQPEEGTTTTETVDVG 280

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            V +  T  V+    + + +   +S          + S +  +  TT+ + SG T+V++G
Sbjct: 281 -VGIDITARVVGKNELEINVAPNISHFTTAQTTSSL-STKRSELSTTLRIQSGQTVVISG 338

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  ++      GIPLL  IP+L  LF     ++ + E+ I  +  ++
Sbjct: 339 LTVENSSDGYTGIPLLGNIPLLRYLFGVKSDSQSQREVIIFLSAEIL 385


>gi|167840181|ref|ZP_02466865.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia thailandensis MSMB43]
          Length = 579

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/284 (19%), Positives = 107/284 (37%), Gaps = 21/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 276 GVAVPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 334

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    GG   +          LD   F   + AL +   
Sbjct: 335 RLDQLGIDWQGALNAPGIGVGFNNRGGGNVTT----------LDGTKFLASVAALSQTGD 384

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +     A  +    YG +++  P +     +
Sbjct: 385 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLDHVTYGTLVNVLPRLTRDASQ 442

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I V+   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 443 VEMIVDIEDGNTDGATSDGQIVVDNNAMPLVNRTEINTVARVPREMSLLIGGNTRDDVTR 502

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 503 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 546


>gi|83717183|ref|YP_439025.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
 gi|83651008|gb|ABC35072.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 619

 Score =  129 bits (324), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 317 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 375

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 376 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 424

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 425 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 482

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 483 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 542

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 543 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 602


>gi|34762860|ref|ZP_00143844.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887468|gb|EAA24554.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 423

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 44/241 (18%), Positives = 88/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGLNGVGSTVNIVR 234

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +           ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 235 QFHNKSDVLSVGINLLEATNDLVVSSVPTLLIASGEEGEFKVTEEVVVGIKTHREDKKDR 294

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414

Query: 412 I 412
           I
Sbjct: 415 I 415


>gi|167923347|ref|ZP_02510438.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 353

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 51  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 109

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 110 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 158

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 159 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 216

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 217 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 276

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 277 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 336


>gi|46447109|ref|YP_008474.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
 gi|46400750|emb|CAF24199.1| putative component D of type II secretion pathway [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 953

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/268 (17%), Positives = 83/268 (30%), Gaps = 41/268 (15%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK----- 248
            QV +++ I +         G            +        G  +      ++      
Sbjct: 634 RQVFIEMLILDTTITDSLTYGVDWGSRFGGGNTAGGQNFLGTGSGLVGSLTNAITNNPIV 693

Query: 249 --------------------GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
                               G L   +   ++ A+   T I  +  P +      +A   
Sbjct: 694 DTVLSGDGYTAGIIGRHLTHGGLHFSTIGALVKAIHSDTKINIIMNPKIVTEDNNTAEVF 753

Query: 289 SGGQHLYKTVSSSTGATSV-----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
            G    YKT S +    SV        D G  L  TP + + G I L I  EV+      
Sbjct: 754 VGSTDRYKTQSIANDIGSVITNNFQFIDVGTTLRVTPLIGNNGIITLDIIQEVTNDGGNA 813

Query: 344 N-----------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           N              +P     +  T V +P G  ++L+G+++    +    IP L  +P
Sbjct: 814 NPNVGNNPSVVDVNLVPVLSKSRTVTKVHVPDGFFVILSGMIQSTESRSVNRIPCLGGLP 873

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVK 420
           ++G + +       +  + I   P +V 
Sbjct: 874 LIGGISKQKSNRDSKRNLMIFIRPLIVD 901


>gi|307247528|ref|ZP_07529573.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856031|gb|EFM88189.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 204

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 52/180 (28%), Positives = 87/180 (48%), Gaps = 5/180 (2%)

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             + LAEP ++ +SG++A    GG+  +       G  SV   ++G+ L     V    R
Sbjct: 4   NGKILAEPNISMLSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDR 62

Query: 328 IGLRIQTEVSEPVIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           I L +   VS         +  +P +  R++ +T E+ +G + +++GLL     +  + +
Sbjct: 63  IRLVLSQSVSTIAGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKV 122

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           P+L  IPILGA FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF 
Sbjct: 123 PVLGDIPILGAFFRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 180


>gi|167820388|ref|ZP_02452068.1| Type III secretion system protein [Burkholderia pseudomallei 91]
          Length = 324

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 22  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 80

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 81  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 129

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 130 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 187

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 188 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 247

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 248 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 307


>gi|76817430|ref|YP_335745.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|76581903|gb|ABA51377.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
          Length = 339

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 37  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 95

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 96  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 144

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 145 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 202

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 203 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 262

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 263 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 322


>gi|19705376|ref|NP_602871.1| general secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19713363|gb|AAL94170.1| General secretion pathway protein D [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 402

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 154 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 213

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +         T ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 214 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 273

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 274 YSEPVFKEAGLIMKVKPIIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 333

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 334 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 393

Query: 412 I 412
           I
Sbjct: 394 I 394


>gi|167915501|ref|ZP_02502592.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 348

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 46  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 104

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 105 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 153

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 154 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 211

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 212 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 271

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 272 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 331


>gi|167908440|ref|ZP_02495645.1| Type III secretion system protein [Burkholderia pseudomallei NCTC
           13177]
          Length = 360

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 58  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 116

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 117 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 165

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 166 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 223

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 224 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 283

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 284 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 343


>gi|167898820|ref|ZP_02486221.1| Type III secretion system protein [Burkholderia pseudomallei 7894]
          Length = 325

 Score =  129 bits (324), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 23  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 81

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 82  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 130

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 131 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 188

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 189 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 248

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 249 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 308


>gi|37522007|ref|NP_925384.1| hypothetical protein glr2438 [Gloeobacter violaceus PCC 7421]
 gi|35213006|dbj|BAC90379.1| glr2438 [Gloeobacter violaceus PCC 7421]
          Length = 493

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/366 (18%), Positives = 123/366 (33%), Gaps = 61/366 (16%)

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHG 149
            G  VG  N+   G         +         L   L        + V+  ++++V  G
Sbjct: 162 LGAQVGSTNL---GSTQPGAATTNPDPAATSGPLRGELF-------VTVDARTNSLVAVG 211

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
                    RA+++++  L+                  L++    QV + V + +V  + 
Sbjct: 212 SP-------RALQIAQVQLA-----------------QLDVRQR-QVMIDVKLVDVNLNN 246

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV---------- 259
           +  +GF+   +  +        A   G         +  G  +   F T+          
Sbjct: 247 VSDLGFRLGGSAGNFQLGTVGGAADLGASYPAAVGLTGGGPGNTLIFNTLGALASAMALR 306

Query: 260 LHALERATAIRTLAEPTLTAISG-----------QSASFTSGGQHLYKTVSSSTGATSVT 308
           L    +  + R LA P L   SG           +       G  +     +    T++ 
Sbjct: 307 LDTAIQEGSARVLASPQLLVASGAGFSKPTAARVEITDDVVVGATITTDRETGQSTTTIK 366

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKAD-TTVELP 363
               GV L      V   G + + ++ +VS   +         +     R  D   + L 
Sbjct: 367 VDKVGVSLEIAVYQVDDNGFVDVSLKPQVSSINDIQRDAAGNLVTLLTRRNLDIQRLRLR 426

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
            G T V+ G++++  +QL + +PLL  +P+LGALFR      E  E+ +  TP ++K   
Sbjct: 427 DGETFVIGGVIREIDRQLVQKMPLLGDLPVLGALFRFQSNQHERREVALMVTPHILKESV 486

Query: 424 MRDLSR 429
                 
Sbjct: 487 HEAAPL 492


>gi|182414666|ref|YP_001819732.1| type II and III secretion system protein [Opitutus terrae PB90-1]
 gi|177841880|gb|ACB76132.1| type II and III secretion system protein [Opitutus terrae PB90-1]
          Length = 895

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/260 (21%), Positives = 95/260 (36%), Gaps = 46/260 (17%)

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
               QIG    I  ++           G   ++     ++ GV+  F    V+ AL +  
Sbjct: 627 TSSAQIGIDLPIVNNAPRIPGGADLALGAGPLA-----TISGVIGEFDVNAVVRALSQQQ 681

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------------------GAT 305
               L+ P +T +SG  A+ T   +  Y      T                         
Sbjct: 682 GTDLLSAPKVTVLSGNPATITVAQEMRYPQSFGQTQSQVGTGNASGGGSAGVAITAGTPQ 741

Query: 306 SVTTHDYGVVLHFTPTVLSPG-RIGLRIQTEVSEPVIGVNAGD----------------- 347
             T  + GV L  TPTV      I L +  +V+E    V  G                  
Sbjct: 742 EFTKRNIGVELRVTPTVEEDDYSISLDLNPKVTEFDGFVEYGGPSIAISGSTTVTVPSGF 801

Query: 348 -MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P + VR   T V +  G T+V+ GL +++++++ + +P+L  +P++G  FR+   + +
Sbjct: 802 YQPIFSVRDIATKVTIWDGATLVMGGLTREEVKKVNDKVPILGDLPLIGRAFRSKGESAQ 861

Query: 407 ETEIFIAATPFLVKPVAMRD 426
           +  + I  T  LV P     
Sbjct: 862 KRNLLIFVTANLVNPGGAPK 881


>gi|167828759|ref|ZP_02460230.1| Type III secretion system protein [Burkholderia pseudomallei 9]
          Length = 326

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 24  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 82

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 83  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 131

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 132 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 189

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 190 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 249

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 250 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 309


>gi|167724236|ref|ZP_02407472.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 351

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 49  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 156

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 214

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 275 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 334


>gi|167850214|ref|ZP_02475722.1| Type III secretion system protein [Burkholderia pseudomallei B7210]
          Length = 333

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 58/300 (19%), Positives = 112/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 31  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 89

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 90  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 138

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 139 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 196

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 197 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 256

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 257 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 316


>gi|289765568|ref|ZP_06524946.1| general secretion pathway protein D [Fusobacterium sp. D11]
 gi|289717123|gb|EFD81135.1| general secretion pathway protein D [Fusobacterium sp. D11]
          Length = 423

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 21/241 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 175 PKQVKITSQILDISNNLFEELGFDWVYKQNVESQERNSLTAMILNKAGVNGVGSTVNIVR 234

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +         T ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 235 QFHNKSDVLSTGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 294

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---------- 353
            +     + G+++   P +     I L I  E+S+     N  ++               
Sbjct: 295 YSEPIFKEAGLIMKVKPFIKDNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSK 354

Query: 354 --RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R   T V + +G TI+L GL K   Q ++  IP+L  IPI+   F+N+    E ++++
Sbjct: 355 VGRGLTTKVRVKNGDTILLGGLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMY 414

Query: 412 I 412
           I
Sbjct: 415 I 415


>gi|257487975|ref|ZP_05642016.1| type III secretion component, putative [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 243

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/231 (19%), Positives = 87/231 (37%), Gaps = 13/231 (5%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 23  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 82

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 83  EGRETAALSLAVSSSTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192

Query: 225 GPSKSFAA---DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTL 272
             S                     S        + + +L AL+    +  L
Sbjct: 193 TFSFGLLTGGALAADAAGGASNVISAGLASGNVNIDAMLEALQSNGVLEVL 243


>gi|254250197|ref|ZP_04943517.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
 gi|124876698|gb|EAY66688.1| Type II secretory pathway, component PulD [Burkholderia cenocepacia
           PC184]
          Length = 463

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
           + ++N L+      V + VTI ++  D L  +G    +           G ++    +  
Sbjct: 78  QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 136

Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
              G   ++ G   S  G    F                    T ++AL +    +  ++
Sbjct: 137 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 196

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
           P + A+    A   +  Q   +        +S+ +   G  +  TP ++           
Sbjct: 197 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 254

Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K
Sbjct: 255 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 314

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+P LS IP++G LF+ +  +    E F   TP +V
Sbjct: 315 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 351


>gi|257142133|ref|ZP_05590395.1| type III secretion system protein BsaO [Burkholderia thailandensis
           E264]
          Length = 600

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 298 GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 356

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 357 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 405

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 406 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 463

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 464 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 523

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 524 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 583


>gi|207724596|ref|YP_002254993.1| hrcc (hrpa) protein (partial sequence c terminus) [Ralstonia
           solanacearum MolK2]
 gi|206589818|emb|CAQ36779.1| probable hrcc (hrpa) protein (partial sequence c terminus)
           [Ralstonia solanacearum MolK2]
          Length = 303

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 85/245 (34%), Gaps = 23/245 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------------- 241
           +  +I ++    L+Q+G    +  S         A+                        
Sbjct: 61  ISASIIDITETALEQLGVDWRLHNSRFDLQTGNGANTMLNNPGSLDSVATTAGAAAAIAA 120

Query: 242 ---GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
              GG  S             + AL++    R  A P +  +    A   +         
Sbjct: 121 TPAGGVLSAVIGGGSRYLMARISALQQTNQARITASPKVATLDNTEAVMDNRQNFYVPVA 180

Query: 299 SSSTGATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKA 356
              +    +     GV L   P  V+  G + +R+   + +  I     G++P     + 
Sbjct: 181 GYQSAD--LYAISAGVSLRVLPMVVMDGGTVRIRMNVHIEDGQITSQQVGNLPVTSQSEI 238

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           DT   +  G ++++AG   D   +  + IP LSKIP++GALFR  +   +  +     TP
Sbjct: 239 DTQALINEGESLLIAGYSVDQQAKTVDAIPGLSKIPLVGALFRTDQTTGQRFQRMFLVTP 298

Query: 417 FLVKP 421
            ++ P
Sbjct: 299 RVITP 303


>gi|149917610|ref|ZP_01906107.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
 gi|149821673|gb|EDM81071.1| type II and III secretion system protein [Plesiocystis pacifica
           SIR-1]
          Length = 777

 Score =  129 bits (323), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/306 (17%), Positives = 105/306 (34%), Gaps = 43/306 (14%)

Query: 148 HGMVR-TIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
            G V+ T  ++ R++ +  +               + +++ L+     QV L++ + E  
Sbjct: 375 SGDVKITADEATRSLVIIASAADYKSL--------EPIIDELD-RDRKQVYLEIYLLEAS 425

Query: 207 --RDILKQIGFQHSITGSS-------------------SGPSKSFAADFGGKFVSE---G 242
             R +    G   +                           S +  +   G  +     G
Sbjct: 426 VGRSLTTGAGAHFAGQFGQGEQQSVGLISSSPSPDVSSILLSPAALSGLAGGLIGPQLIG 485

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT----- 297
               +    D  +F  V+ AL+    +  +AEP +     + A    G +          
Sbjct: 486 TGAQLGLERDIPAFGVVIQALQSNDDVNIVAEPHIYTADNKEAQIEVGRKVPTPGALQFG 545

Query: 298 ----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                +S T   S+   D  + +  TP V     + L I+ E  + V       + + + 
Sbjct: 546 GAGGGTSLTPLQSINREDVTLDIKVTPHVKDETSLTLDIELEDRDVVDQDPVLGVTTTKR 605

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           R     V       +VL GL+++   +  + +P L  IPILG LF+     +E+  + I 
Sbjct: 606 RIKLENVLARDDLPVVLGGLMRERELENTQQVPGLGSIPILGWLFKRRVKQKEKINLLIV 665

Query: 414 ATPFLV 419
             P +V
Sbjct: 666 LIPHVV 671


>gi|206563896|ref|YP_002234659.1| type III secretion system protein [Burkholderia cenocepacia J2315]
 gi|18092668|gb|AAL59397.1| BcscC [Burkholderia cenocepacia]
 gi|28394249|gb|AAO31724.1| BcscC [Burkholderia cenocepacia]
 gi|198039936|emb|CAR55914.1| type III secretion system protein [Burkholderia cenocepacia J2315]
          Length = 681

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 106/314 (33%), Gaps = 59/314 (18%)

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208
           F +  G +      +   +N + +                       V + VTI ++  D
Sbjct: 293 FSNNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLIGQLDERPRIVEINVTIIDINED 352

Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254
            L  +G    +           G ++    +     G   ++ G   S  G    F    
Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGAGNPPLTFGIGTSETGQTGAFMPTG 412

Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                           T ++AL +    +  ++P + A+    A   +  Q   +     
Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472

Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349
              +S+ +   G  +  TP ++                + + I  +    V G    ++P
Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+ +  +    E
Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVRLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590

Query: 410 IFIAATPFLVKPVA 423
            F   TP +V   +
Sbjct: 591 RFYLLTPRVVTSAS 604


>gi|107025868|ref|YP_623379.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116692948|ref|YP_838481.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia HI2424]
 gi|105895242|gb|ABF78406.1| Type III secretion system outer membrane pore YscC/HrcC
           [Burkholderia cenocepacia AU 1054]
 gi|116650948|gb|ABK11588.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia HI2424]
          Length = 681

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/277 (18%), Positives = 102/277 (36%), Gaps = 42/277 (15%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFA 231
           + ++N L+      V + VTI ++  D L  +G    +           G ++    +  
Sbjct: 327 QSLINQLDER-PRIVEINVTIIDINEDSLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQY 385

Query: 232 ADFGGKFVSEGGDFSVKGVLDRF-----------------SFETVLHALERATAIRTLAE 274
              G   ++ G   S  G    F                    T ++AL +    +  ++
Sbjct: 386 NGVGNPPLTFGIGTSETGQTGTFMPTGIALTASIGGSLRNYLLTRVNALAQKGQAQLRSK 445

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP--------- 325
           P + A+    A   +  Q   +        +S+ +   G  +  TP ++           
Sbjct: 446 PKVLALDNTEAILENLTQFYVQVPGYQD--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVS 503

Query: 326 ---GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                + + I  +    V G    ++P  + R   T   +  G ++++AG   D+++  K
Sbjct: 504 GNPQSVMMSIDIQDGNIVPGQAVSNVPVIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNK 563

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G+P LS IP++G LF+ +  +    E F   TP +V
Sbjct: 564 SGVPWLSDIPLIGNLFKYTDKSGNHMERFYLLTPRVV 600


>gi|297622120|ref|YP_003710257.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
 gi|297377421|gb|ADI39251.1| putative general secretion pathway protein D [Waddlia chondrophila
           WSU 86-1044]
          Length = 865

 Score =  128 bits (322), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 34/271 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF--- 238
           K+++  L++  +  V ++V + E         G      GS++      +  + G     
Sbjct: 530 KEIIAKLDVP-KKMVQIEVLLFERILQRDISYGLNLLKIGSAASQKHRTSTVWAGGLDQC 588

Query: 239 --VSEGGDFSVKGVL-------------DRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
             +++    +  G                  +F+     L     +   A P++ AI+  
Sbjct: 589 EAIADASTIATCGRGVIDFFISRKKTDSGIPAFDLAYKFLMSQDNVYLTASPSVVAINQT 648

Query: 284 SASFTSGGQHLYKTVSSSTGATSV------TTHDYGVVLHFTP---------TVLSPGRI 328
            A  +   +      ++ T + +V      T   YG+ +  TP                I
Sbjct: 649 EAVISIQDERSILVGTNITDSAAVPAQNAFTRAQYGITIRVTPIIHYSEDTDFGDPENYI 708

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L  +               P    R+    V +P G  +++ GL +     + + IP L
Sbjct: 709 TLNSEITFDTIPPSQQNSSQPQVNRRQIINQVNIPDGQAVIIGGLQRKQGSDMCDKIPFL 768

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++P LG LF  ++   EETE+ I  TP ++
Sbjct: 769 GELPGLGKLFSTTQLTDEETELVIFMTPKII 799


>gi|170737787|ref|YP_001779047.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia cenocepacia MC0-3]
 gi|169819975|gb|ACA94557.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia cenocepacia MC0-3]
          Length = 681

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 105/310 (33%), Gaps = 59/310 (19%)

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIA------------------GEDQVTLKVTIAEVRRD 208
           F +  G +      +   +N + +                       V + VTI ++  D
Sbjct: 293 FANNGGGDTLPQIVADPAINAVIVRDLPENMYRYQSLISQLDERPRIVEINVTIIDINED 352

Query: 209 ILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF---- 254
            L  +G    +           G ++    +     G   ++ G   S  G    F    
Sbjct: 353 SLDSLGIDWRLHTTHGDVQIGNGQNALNGNTQYNGVGNPPLTFGIGTSETGQTGTFMPTG 412

Query: 255 -------------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                           T ++AL +    +  ++P + A+    A   +  Q   +     
Sbjct: 413 IALTASIGGSLRNYLLTRVNALAQKGQAQLRSKPKVLALDNTEAILENLTQFYVQVPGYQ 472

Query: 302 TGATSVTTHDYGVVLHFTPTVLSP------------GRIGLRIQTEVSEPVIGVNAGDMP 349
              +S+ +   G  +  TP ++                + + I  +    V G    ++P
Sbjct: 473 D--SSLYSVTTGTSIKVTPMIVDEAIRNAAAVSGNPQSVMMSIDIQDGNIVPGQAVSNVP 530

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             + R   T   +  G ++++AG   D+++  K G+P LS IP++G LF+ +  +    E
Sbjct: 531 VIQQRNIVTKTMIDEGKSLLIAGFNDDEVKLNKSGVPWLSDIPLIGNLFKYTDKSGNHME 590

Query: 410 IFIAATPFLV 419
            F   TP +V
Sbjct: 591 RFYLLTPRVV 600


>gi|282890888|ref|ZP_06299405.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499242|gb|EFB41544.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 955

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/274 (18%), Positives = 96/274 (35%), Gaps = 47/274 (17%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSS----------------------------SG 225
            QV +++ I +   D     G                                     +G
Sbjct: 623 RQVFIEMLILDSSLDDSLNYGVNWGTRFGGGDTAGSQAFLSSASTLPGALDTTGIANTNG 682

Query: 226 PSKSFAADFGGKFVSEGGDFSVK--------GVLDRFSFETVLHALERATAIRTLAEPTL 277
            S           ++    +++         G L   SF  ++ A+   T+   +  P +
Sbjct: 683 ISTGQILTPNANTLARTPGYNLGIVGQTVSVGNLTFQSFGALVKAIHDKTSTNIVMNPKI 742

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGA-----TSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
            A    +A    G    Y+T S S        T+    + G  L  TP + +   + L I
Sbjct: 743 LAEDNVTAEIFVGENTQYQTQSISNDQGSVITTNFEYRNIGTTLKITPFLGNNDIVTLEI 802

Query: 333 QTEVSEPVIGVNAGDM------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
           + EVS      NA  +      P+ R+ +  T V +P    +V++G+++D   + +  +P
Sbjct: 803 RQEVSSVASTTNAQALNNITPGPTTRLSRTTTRVHVPDKYFLVISGMVQDQETRRRVSVP 862

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  +P++GA F +     E+  + I   P ++ 
Sbjct: 863 CLGGLPVIGAAFSDKNVTDEKRNLMIFIRPEIID 896


>gi|262039342|ref|ZP_06012655.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
 gi|261746604|gb|EEY34130.1| general secretion pathway protein D [Leptotrichia goodfellowii
           F0264]
          Length = 385

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/236 (22%), Positives = 103/236 (43%), Gaps = 12/236 (5%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVSEGGDFSVKG 249
             +DQ+ +K TI +   ++ +++G   +I  ++  P+  +  A F    ++ G  F+  G
Sbjct: 149 RPKDQIIIKGTIIDTSSNLFEKLGVDWNINSNNPEPAKSNLVAKFLNGEITIGSIFASGG 208

Query: 250 VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT- 308
                 F    + L     I+  A PTL  +  +        + L     ++   T  T 
Sbjct: 209 KFLGIDF----NLLRENGDIKIEAMPTLLIMEDEEGELKVTEEVLVGEKKTTKNNTDYTE 264

Query: 309 --THDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
               + G+V    P    +    +I L+I TE+S   +  N +    + +  +  T + L
Sbjct: 265 PIFSEAGIVFKILPEIRKINGEKKILLKIDTEISNFKLTSNYSSGSGAKQKNQTKTIITL 324

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +GG+  + GL ++  ++  + +P  S IPI+G LF+  R N+E  +I+I     +
Sbjct: 325 NNGGSTFIGGLKQNVTKETIKKVPFFSSIPIIGPLFKYKRNNKEVRDIYIEIEAVI 380


>gi|167573168|ref|ZP_02366042.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis C6786]
          Length = 577

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223
               + ++  I E+  D+L+QIG       S                             
Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368

Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                       + +   +        G   +             ++AL+  + ++  A 
Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAAHYLMARVNALQSTSKVKIDAS 428

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333
           P +  +    A   +  +   +    ++    + +   GV L   P ++  G    +++ 
Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486

Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             V++  +  +    +P     + +T   +  G ++++AG   D       G+P LSKIP
Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++GALFR +       E     +P ++ P
Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|257125412|ref|YP_003163526.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
 gi|257049351|gb|ACV38535.1| type II and III secretion system protein [Leptotrichia buccalis
           C-1013-b]
          Length = 400

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 67/311 (21%), Positives = 124/311 (39%), Gaps = 40/311 (12%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
             R++  +   L  F       V  + + ++ +G    I++ +R ++  +          
Sbjct: 118 EYRNVKDITEKLNGFF---GFEVIGIDNKIIFNGDESKIEEMRRIIKSLD---------- 164

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADF 234
                            ++QV +K TI +   ++ +++G   SI   ++  +  +  A F
Sbjct: 165 ---------------KEKEQVIIKGTIIDTSSNLFERLGIDWSINSDNANATKDNLVAKF 209

Query: 235 GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL 294
               VS    FS  G      F    + L+    IR  A PTL  +  +        + L
Sbjct: 210 LNGEVSIASIFSKGGRFLGIDF----NLLKENGDIRIEAMPTLMIMENEEGELKVTEEVL 265

Query: 295 ---YKTVSSSTGATSVTTHDYGVVLHFTP---TVLSPGRIGLRIQTEVSEPVIGVNAG-D 347
               KT    T        + G+V    P    +    +I L+I TE+S   +  +    
Sbjct: 266 VGEKKTTKKDTEYVEPIFSEAGIVFKINPEIRKINGIKKILLKIDTEISNFKLTSSYNAS 325

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             + +  +  TT+ L +GG+  + GL +D  ++    +P+LSKIPI+G LF+  R NRE 
Sbjct: 326 SGAKQKNQTKTTITLNNGGSTFIGGLKQDVSKETIRRVPVLSKIPIVGPLFKYRRTNREL 385

Query: 408 TEIFIAATPFL 418
            +I+I     +
Sbjct: 386 RDIYIEIEAVI 396


>gi|189424524|ref|YP_001951701.1| type II and III secretion system protein [Geobacter lovleyi SZ]
 gi|189420783|gb|ACD95181.1| type II and III secretion system protein [Geobacter lovleyi SZ]
          Length = 769

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 62/405 (15%), Positives = 124/405 (30%), Gaps = 69/405 (17%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVE 139
            + +  T+ ++ ++  +             L    L   D       +R  +    + + 
Sbjct: 245 KILNETTVLIYPQSAEKTK-----QYQDMQLRTFHLNHLDAKKAANLIRTMLQVRRLYIN 299

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLK 199
             ++ +V+          ++ +E  +                           E +V L 
Sbjct: 300 EDANALVVRDTSDVTDVIEKILEAHDL-------------------------PEAEVVLD 334

Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG---------------- 243
           V + E+       +G   S      G                                  
Sbjct: 335 VEVIEISDKNAHNVGLLLSNYDVQLGAFSPSNELLATTLKDTTSTTSTTVTTDATIKNLV 394

Query: 244 -DFSVKGVLDRFSF-ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKT 297
             FS+       +      +  +  T    L+ P +   + + A F  G +         
Sbjct: 395 KAFSINSFGGYVTVPNAQYNFGKTLTNGEVLSNPKIRVKNKEKAKFNVGTRVPITTTTMA 454

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD------MPSY 351
            + +T   +V   D GV ++  PT+     + +++  EVS  +     G       + + 
Sbjct: 455 TTGTTSQVNVQYVDVGVKVNAEPTIQLNNEVSIKLGLEVSSIISRETVGGKDSATTVVTI 514

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R  DT + L  G T V+ GL+       K+ I LL  IP++G L  NS+ + ++TE+ 
Sbjct: 515 GTRNLDTVLSLKDGETSVIGGLISHSNSDSKQKIFLLGDIPLIGPLLSNSKTDNDKTELI 574

Query: 412 IAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKE 456
           +A TP LV+ V                   +F   + +       
Sbjct: 575 LAITPRLVRGV-----------TVQPRKVTSFISGKEDDPSVTPP 608


>gi|289804850|ref|ZP_06535479.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. AG3]
          Length = 230

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 43/229 (18%), Positives = 84/229 (36%), Gaps = 10/229 (4%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            + + V I +V    + Q+G       S  G   +F           G       + D  
Sbjct: 1   MIEISVKIIDVNAGDINQLGIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTS 56

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           +F   L+ALE+++    L++P++  ++   A          K          + +   G 
Sbjct: 57  NFMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGS 114

Query: 315 VLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVL 370
           +L  TP +L+     +I L +  +  +     +    +P  +  +  +   L +G +++L
Sbjct: 115 LLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLL 174

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G  +      +  IPLL  IP++G LFRN                 +V
Sbjct: 175 GGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 223


>gi|167840250|ref|ZP_02466934.1| type II/III secretion system protein [Burkholderia thailandensis
           MSMB43]
          Length = 303

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 109/294 (37%), Gaps = 17/294 (5%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I+ +  ++++++  +   +      + L +                   +  L +     
Sbjct: 19  IQADPRTNSILVRDVPEHMAQYPDLIALLDVKPRLIEIEARIIEIDDGALRQLGVDWR-- 76

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLD 252
                  + V       +  Q+S    S  P+    +  G       +     S+  VL 
Sbjct: 77  ----AHNSHVDLQTGTGLTSQNSYANGSLNPTFGSISLSGNDSVGVPASPLGLSLTAVLG 132

Query: 253 RFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH 310
                    ++ALE +   RT A P +T +    A   +  Q   +    ++    + + 
Sbjct: 133 DAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSI 190

Query: 311 DYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
             GV L   P V+  G   +I L ++  V   +      ++P     + +T   +  G  
Sbjct: 191 STGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQA 249

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +++AG   D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 250 LLIAGYKVDARSNTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 303


>gi|294055468|ref|YP_003549126.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614801|gb|ADE54956.1| type II and III secretion system protein [Coraliomargarita
           akajimensis DSM 45221]
          Length = 906

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 106/323 (32%), Gaps = 95/323 (29%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHS--------------------------ITGSSSGPS 227
            QV ++    EV ++ L+++GF  +                             + S   
Sbjct: 544 KQVEIEAKFLEVAQNDLEELGFDWTVGEGAQTIVDEFGAPVLDQFGNPTVAYQRNVSTQG 603

Query: 228 KSFAADFGGKFVSEGGDFS----------------------------VKGVLDRFSFETV 259
           ++ A  F     S   + +                            +        F   
Sbjct: 604 RTLADAFSADTASSAINITDVFGNESSVSTQPPANPSTIDLAANAASLFTATGWSMFGAD 663

Query: 260 LH----ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------------- 301
           ++    A+ R +    ++ P +T +SG+ A+ T   +  Y                    
Sbjct: 664 VNLAIRAIARQSGSDLMSAPKVTVLSGKRANITVAQELRYPESYGDIESTVSSNNNGGAA 723

Query: 302 -----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD--------- 347
                         + GV L  TP V +   I L ++  V+E    V  G          
Sbjct: 724 ISITAGTPEDFVVRNVGVELAVTPNVENDDTISLILEPRVTEFEGFVEYGGPSVALASGT 783

Query: 348 ---------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
                     P +  R+  T V +  G TIV+ GL +D+++ +++ +P+L  IP LG LF
Sbjct: 784 TVTVPAGFYQPVFSTREISTEVTIFDGATIVMGGLTRDEVKYIEDKVPVLGDIPALGRLF 843

Query: 399 RNSRFNREETEIFIAATPFLVKP 421
           R+    R++  + I  T  +V P
Sbjct: 844 RSEGETRQKRNLLIFVTANMVSP 866


>gi|167567958|ref|ZP_02360874.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia oklahomensis EO147]
          Length = 577

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 41/269 (15%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSS---------------------------- 223
               + ++  I E+  D+L+QIG       S                             
Sbjct: 309 RPRLIEIQAHIMEIDDDLLRQIGVDWRAHNSHGDIQTGMGAVTQNSYGSTSTGIGATAQN 368

Query: 224 ---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                       + +   +        G   +             ++AL+  + ++  A 
Sbjct: 369 SYANGQINPFFGTTTLPGNAIANAPPAGAAITAVVGDAARYLMARVNALQSTSKVKIDAS 428

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-RIGLRIQ 333
           P +  +    A   +  +   +    ++    + +   GV L   P ++  G    +++ 
Sbjct: 429 PLVATLDNSEAVMDNMTRFFVRVSGYTSAD--LYSIATGVSLRVLPLIVQDGSETRIKLN 486

Query: 334 TEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
             V++  +  +    +P     + +T   +  G ++++AG   D       G+P LSKIP
Sbjct: 487 VHVTDGQLTGDLVDSIPVVTSSEINTQAFVGQGESLLIAGYSTDKRSNGVTGVPWLSKIP 546

Query: 393 ILGALFRNSRFNREETEIFIAATPFLVKP 421
           ++GALFR +       E     +P ++ P
Sbjct: 547 LIGALFRYNSDEHSHMERVFLLSPRIIDP 575


>gi|257092071|ref|YP_003165712.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044595|gb|ACV33783.1| type II and III secretion system protein [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 770

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/274 (18%), Positives = 95/274 (34%), Gaps = 38/274 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE-GGDFSVKGVL 251
             QV L++ I EVR D   +  F     G+S                 +   +    G+ 
Sbjct: 335 PRQVLLEMKILEVRLDNGFRSVFDIGFAGTSKSTGPLPVGVLPTTVPDQYARNAGTTGMF 394

Query: 252 D------------RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           D              S       L +   ++ L+ P L A +   A    G + +    +
Sbjct: 395 DIEQDATMLWQYMSKSLSLRFQLLAQENKLKVLSSPMLVAANNHPARLFIGDERVLTVGA 454

Query: 300 SSTGAT------------SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-------PV 340
           SS   T                 D G  L   P +     + L I  + S          
Sbjct: 455 SSQSITGTTGATNTQITVETERRDVGQTLSILPRINGDRSVTLTIDQDSSTVRLRDGTIP 514

Query: 341 IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           I    G +  + +    T     T     G T+ + G+++D +++ +E +P+L  IP+LG
Sbjct: 515 IATGTGGVVYFPIDTVSTANLQVTAHAQDGMTVAIGGMIRDSLERDEEKVPVLGDIPVLG 574

Query: 396 ALFRNSRFNREETEIFIAATPFLVK-PVAMRDLS 428
            LF+        ++I +  TP +++ P+    ++
Sbjct: 575 YLFKRDVRASIRSQIVLLITPRVLESPLEANSVA 608


>gi|171915747|ref|ZP_02931217.1| putative type III secretion protein YscC [Verrucomicrobium spinosum
           DSM 4136]
          Length = 650

 Score =  128 bits (321), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 93/263 (35%), Gaps = 27/263 (10%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH--------------------SITG 221
            +++ +L++     + +   I +V     K  G +                     S   
Sbjct: 306 DELIQMLDVPTNA-IEITAAIVDVDTTNGKDFGMEFLGNYTAKDGNKYRFGFEADRSQFD 364

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--LHALERATAIRTLAEPTLTA 279
               P ++  +   G  +  GG  +V  ++    F+ +  L ALE       ++ P++  
Sbjct: 365 GGEAPPETTPSFVDGTNLVRGGGLNVAALIGGEGFDLLTRLRALETKGGADIVSSPSVLT 424

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT-VLSPGRIGLRIQTEVSE 338
           +    A      +  +    +      +     GV    TP  V+  G+   R+  ++++
Sbjct: 425 MENVEA--VVRTEETFYVRVAGDQEVDLFDVTAGVQFRVTPNLVVENGKRSFRLHLDITD 482

Query: 339 PV-IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                 +  D+P  R     T   +P   T+++ G   +   +    IP+L  IP++G  
Sbjct: 483 GNFEDTSVDDIPGTRESAITTQAIVPESKTLLVGGYFIERKTKNTRQIPILGDIPVVGYA 542

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F+      E  + F   TP +V 
Sbjct: 543 FKRKEVLNERKQRFFFITPKVVD 565


>gi|32307038|gb|AAP79008.1| MxiD [Shigella flexneri]
          Length = 566

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSQGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTRNISNIVRVFLIQPREIK 521


>gi|261884996|ref|ZP_06009035.1| type II and III secretion system protein [Campylobacter fetus
           subsp. venerealis str. Azul-94]
          Length = 203

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 82/187 (43%), Gaps = 17/187 (9%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT---------- 308
           VL+ LE     + ++ P +  ++  +A  T G    Y+    +T   + T          
Sbjct: 4   VLNFLETKGRTKVVSSPKIMTMNNHNALITVGDNINYRVQEDTTNTNTQTAVSNTTYTQY 63

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-------GDMPSYRVRKADTTVE 361
           +   G++L+  P V   GRI LRI   +S    G +           P    +K  T V+
Sbjct: 64  SIFIGILLNLLPEVSDDGRIMLRINPSLSSFKYGDDNRRQANIREIAPDTLQKKLSTVVQ 123

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           + SG TI+L GL+ +   +    +P+L  IP+ G LF++++ +   TE+    TP ++  
Sbjct: 124 VNSGDTIILGGLIGETKGKDNTSVPVLGDIPLFGNLFKSTKDSVSTTELIFIITPKVINN 183

Query: 422 VAMRDLS 428
              + + 
Sbjct: 184 ETPKQIR 190


>gi|167573316|ref|ZP_02366190.1| Type III secretion system protein [Burkholderia oklahomensis C6786]
          Length = 302

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 103/270 (38%), Gaps = 22/270 (8%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
              + ++  L++  + Q+ L + I ++R+  L Q+G       ++ G    F    G   
Sbjct: 30  QDMEALIRSLDV-EKRQIELSLWIIDIRKSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT 88

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                       LD   F   + AL +      ++ P +       A+F S      K +
Sbjct: 89  -----------TLDGTKFLASVAALSQTGDATVISRPIVLTQENVPATFDSNQTFYAKLI 137

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTE-------VSEPVIGVNAGDMPS 350
                A  +    YG +++  P +     ++ + +  E        S+  I ++   MP 
Sbjct: 138 --GERAVQLEHVTYGTLVNVLPRLTRDASQVEMIVDIEDGNTDGATSDGRIVIDNNTMPL 195

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
               + +T   +P   ++++ G  +DD+ +    IP L+ IP++G LFR      E+   
Sbjct: 196 VNRTEINTVARVPHEMSLLIGGNTRDDVTRRTFRIPGLASIPLIGGLFRGHSDRHEQVVR 255

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
                P L++  A     +P +     D+A
Sbjct: 256 VFLIQPKLLRAGAAWPDGQPWESGDPADNA 285


>gi|238898588|ref|YP_002924269.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
 gi|229466347|gb|ACQ68121.1| type III outer membrane secretin precursor [Candidatus Hamiltonella
           defensa 5AT (Acyrthosiphon pisum)]
          Length = 553

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 74/249 (29%), Gaps = 19/249 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + L V I ++ ++ L Q+G              +F    G +  +           +   
Sbjct: 306 IELSVWIIDLDKNTLDQMGVDWK-------GGMNFKNQLGVRLNAGTSTL------EGGQ 352

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + AL R      ++ P +       A F +      + +        +    YG +
Sbjct: 353 FIASVMALSRQKKANVVSRPMVLTQENIPAVFDNNRTFYSELLGEKN--VKLENVTYGTL 410

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +   P      +I + I  E    V          +P        T   +P G ++++ G
Sbjct: 411 VSVLPRFTENNQIEMMINIEDGNEVSQSDHETKTSLPKVGRTNISTIARVPKGKSLLVGG 470

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF-LVKPVAMRDLSRPD 431
             +D        IP L  +P++G LF     +           P  +  P+         
Sbjct: 471 YTRDANTSENTKIPGLGSLPLIGKLFSYENKSISSIVRVFLIQPREINAPLNRDASDLAS 530

Query: 432 DHYSVEDDA 440
           D      D 
Sbjct: 531 DIIKSSSDI 539


>gi|166363715|ref|YP_001655988.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
 gi|166086088|dbj|BAG00796.1| type IV pilus assembly protein [Microcystis aeruginosa NIES-843]
          Length = 701

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/187 (24%), Positives = 78/187 (41%), Gaps = 15/187 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F   L A  +    + L +P+L    GQ A+     + L    +     + V T      
Sbjct: 490 FLMTLQASIQTGNAKILTDPSLVVQEGQQATVKLTQKVLESVQTEVDPLSGVRTITPVLA 549

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--------NAGDMPSYRVRKADT-TV 360
           D G+ L      V   G I L +   V+ P   +        +   +     R+  +  V
Sbjct: 550 DAGLTLAVNVDQVDDNGFISLSVSPTVASPGTPIEFNSGGINSGNTLTPLIRRELTSGLV 609

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G +++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP +++
Sbjct: 610 RLRDGQSLILSGIIQETQQSSETKVPILGDIPILGALFRSRTNQNNRSEVIILLTPKIIE 669

Query: 421 PVAMRDL 427
             A   L
Sbjct: 670 DTATSTL 676


>gi|223938170|ref|ZP_03630067.1| peptidase M56 BlaR1 [bacterium Ellin514]
 gi|223893214|gb|EEF59678.1| peptidase M56 BlaR1 [bacterium Ellin514]
          Length = 1633

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 70/366 (19%), Positives = 145/366 (39%), Gaps = 16/366 (4%)

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
            RT+    +  G  N +++   G  +L     +            +    + I V ++  
Sbjct: 281 ARTLAALEELRGSQNQLVMAAAGAPLLQRIRRLLGQAERNPS--HQAWPLAGIIVLLLVA 338

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVT 201
            + +          Q    +S+T    +GR   AN+    V +  ++ G    Q+ ++  
Sbjct: 339 ALTIGLRSSRAVADQTQETISKTNKLVTGRMLPANARKTFVQSDKSLTGAQLPQIVVQSK 398

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
             EV         F  +I    +  +   A     + VS   +    G+L    ++  + 
Sbjct: 399 FFEVDEKD-----FPKAIFNLPAVSNAVCAIATPWQPVSAPKEQCFTGMLTGPQYQAAVK 453

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            LE A+ I  L  P++   SG+ A   +    L + +++++ + +     +G VL   PT
Sbjct: 454 QLEMASCIDMLTAPSVITQSGRQAQIQAVD--LIEILTNASPSAAKMQLPFGPVLDVLPT 511

Query: 322 VLSPGR-IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           V      + L     V+  +   +   +P  +  +  T + L  G T+V+ GL+ + I  
Sbjct: 512 VTPDKLGVQLTGIATVTMLLDAPSVV-LPRIQFTQLSTEMTLKDGQTLVMGGLMPETITI 570

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM---RDLSRPDDHYSVE 437
           +K+ +P+L+ IP+ G LFR+   ++    + +  TP L+ P       D ++P +   + 
Sbjct: 571 VKDRVPVLADIPLAGRLFRSGSTSKSRKYLIVFVTPTLINPDGSRYHADDTKPTEATVLP 630

Query: 438 DDAKAF 443
            +   F
Sbjct: 631 PETLLF 636



 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/348 (16%), Positives = 111/348 (31%), Gaps = 62/348 (17%)

Query: 102  IGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
               DG Q +   ++ +     L+  +R F   +NI     +   V   +     ++   V
Sbjct: 1300 YPKDGTQPVTNLVVHD---RGLQTAIRSFFEKANIDFSPTNPVNVGKSVFYNELNATLMV 1356

Query: 162  ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ--IGFQHSI 219
              ++  L               +   L      Q+ +K    E+      Q  +G     
Sbjct: 1357 RTTQEEL-------------DLIQKELARITPPQINIKARFVEMDETAGSQITLGESMRG 1403

Query: 220  TGSSSGPSKS------FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
              S +  S +       ++      V+        GVL    ++  +  LERA  +  L 
Sbjct: 1404 IDSKTNSSMTQVTTPKVSSSGSFPPVTNALALQFTGVLTPEQYKEAITRLERADGVDLLT 1463

Query: 274  EPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPG 326
             P +T  SG+ A   +       T  ++       T   S     +G VL   P V +  
Sbjct: 1464 APDVTTESGRRAQIQAVDIKTIITGLTTVYTNGTATNMLSTQNLPFGPVLDVIPKVSADD 1523

Query: 327  -RIGLRIQTEVSEPVI------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
              I + +   V+E V                   +P +R+R+  ++  +  G TI+L G+
Sbjct: 1524 SSIEMNLVASVTEFVGYDDPKKLAGQKRTDVQIPLPHFRLRQLTSSASVADGHTIILGGV 1583

Query: 374  LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             ++   +                  R      +   + +  TP L+ P
Sbjct: 1584 EQNTPGK------------------RGKEKPGKRKTLLVFVTPTLINP 1613


>gi|85059260|ref|YP_454962.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
 gi|84779780|dbj|BAE74557.1| type III secretion apparatus [Sodalis glossinidius str.
           'morsitans']
          Length = 494

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 43/268 (16%), Positives = 94/268 (35%), Gaps = 20/268 (7%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIG 214
            D ++   +   + +     +   ++  +            + + V I +V    + ++G
Sbjct: 235 ADPRQNAVIVRDYAANMAGYRQLIAALDQ--------RPQMIEIAVMIIDVDVGDINKLG 286

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
              S   S  G   SF +D       +        + +   F   L+ LE+      L++
Sbjct: 287 IDWSGAMSLGGSGFSFNSD------GDIRGGFSSVISNTNDFMVRLNVLEQRAHAYILSQ 340

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQ 333
           P++  ++   A          K          + +   G +L  TP ++   G+  + + 
Sbjct: 341 PSVVTLNNIQAVLDKNVTFYTKL--QGDKFAKLESVTTGSLLRVTPRLMEDQGKQNIMLS 398

Query: 334 TEVSEPVIGV---NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             + +            +P  +  +  +   L  G +++L G  +D  +Q ++ IPLL  
Sbjct: 399 LNIQDGQQTSPLSATDPLPQVQNSEIASQATLRPGQSLLLGGFQQDKQKQGQKKIPLLGD 458

Query: 391 IPILGALFRNSRFNREETEIFIAATPFL 418
           IP+LG LFR+S                +
Sbjct: 459 IPLLGHLFRSSIDETHSVMRLFLIKATV 486


>gi|45751679|emb|CAF21323.1| InvG protein [Burkholderia mallei]
          Length = 278

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 172

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 233 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276


>gi|167566206|ref|ZP_02359122.1| Type III secretion system protein [Burkholderia oklahomensis EO147]
          Length = 315

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 110/300 (36%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G      D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 13  GFALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 71

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 72  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 120

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +     A  +    YG +++  P +     +
Sbjct: 121 ATVISRPIVLTQENVPATFDSNQTFYAKLI--GERAVQLERVTYGTLVNVLPRLTRDASQ 178

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 179 VEMIVDIEDGNTDGATSDGRIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 238

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ IP++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 239 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGDPADNA 298


>gi|254255049|ref|ZP_04948366.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124899694|gb|EAY71537.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 552

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 66/327 (20%), Positives = 108/327 (33%), Gaps = 41/327 (12%)

Query: 120 IAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ---RAVELSETFLSQSGRNQY 176
           I  +   ++R I + N  VE                 +     A++ +            
Sbjct: 203 IPGIATLVQRAIGEENAIVETKRLDASASKEAVNPAAADGTMPALDAAIGPPPTRPSGAV 262

Query: 177 ANSSSKKV-------MNLLNIAG-EDQV-----------------TLKVTIAEVRRDILK 211
             SSS  V        N L + G  +QV                  L + I ++ R+ L 
Sbjct: 263 QTSSSHGVRIVAYPETNSLMVKGTPEQVKFVRQLVQALDEEKRHIELALWIIDLEREALD 322

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           Q+G     T S  G S S   +      + GG            F   + AL R    + 
Sbjct: 323 QLGVNWRGTVSLGGMSASLNMNNNTSLSTVGG----------TEFIASVTALARDRRAQI 372

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           ++ P +       A F S      K V     A  +    YG +++  P   +   I L 
Sbjct: 373 VSRPVVLTQENTPAVFDSSQTFYAKLV--GERAVDLKEVTYGTMVNVVPRFNAKDDIELA 430

Query: 332 IQTEV-SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
           +  E  S     V+   MP+    K  T   +P G ++++ G  + +   + E IP L  
Sbjct: 431 LNIEDGSAKSSNVDQDPMPTVNRTKISTVARVPKGKSLLVGGYTRGETGDVVEKIPGLGS 490

Query: 391 IPILGALFRNSRFNREETEIFIAATPF 417
           +P +G LFR       +T      +P 
Sbjct: 491 LPFIGGLFRFKTEVNRDTVRVFLISPR 517


>gi|167573369|ref|ZP_02366243.1| type II/III secretion system protein [Burkholderia oklahomensis
           C6786]
          Length = 607

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258
           +       +  Q+S    S  P+    +  G            G   +            
Sbjct: 385 IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 444

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            ++ALE +   RT A P +T +    A   +  Q   +    ++    + +   GV L  
Sbjct: 445 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 502

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 503 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 561

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P+LSK+P++GALFR++      TE     TP +++P
Sbjct: 562 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 607


>gi|146305065|ref|YP_001185530.1| YscC/HrcC family type III secretion outer membrane protein
           [Pseudomonas mendocina ymp]
 gi|145573266|gb|ABP82798.1| type III secretion outer membrane pore, YscC/HrcC family
           [Pseudomonas mendocina ymp]
          Length = 696

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 104/321 (32%), Gaps = 20/321 (6%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           R                   +  + ++  L++   + + +   I ++ R+ L ++  + +
Sbjct: 282 RVSADVRNNAVLIYDLPERKAIYQGLIQQLDVP-RNLIEIDAVILDIDRNELAELSSRWA 340

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                     +  +  GG  + E G  S   + D   F   L ALE   A   +  P++ 
Sbjct: 341 F---------NSGSVSGGANLFEPGTTSTLFIQDAGRFAAELRALEGTGAASIMGNPSIL 391

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTE 335
            +  Q A            +  +    ++     G  L   P  L+ G   ++ L +  E
Sbjct: 392 TLENQPAVIDFSRTEYLTAL--AERVANIQPITAGTSLQVIPRSLNQGSRSQVQLIVDIE 449

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
             + +    + + PS R     T   +   G++V+ G    +       IPLL  IP++G
Sbjct: 450 DGQIIESNISEEQPSVRRGNVSTQAVIAEHGSLVIGGFHSLEANDRINKIPLLGDIPVIG 509

Query: 396 A-LFRNSRFNREETEIFIAATPFL----VKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
             LF++        E     TP L    V P        P +      +           
Sbjct: 510 KLLFQSRNREFNRRERLFILTPRLIGDQVNPARYVQHGNPHNLDRQLREIDERRRGTERP 569

Query: 451 IYGPKEASEVEGQNYKGAIGF 471
             G  E +  +  +     GF
Sbjct: 570 SRGDIEHAFTQLLDGIHPSGF 590


>gi|167577430|ref|ZP_02370304.1| type III secretion system protein BsaO [Burkholderia thailandensis
           TXDOH]
          Length = 339

 Score =  127 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 57/302 (18%), Positives = 112/302 (37%), Gaps = 22/302 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           + G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R
Sbjct: 35  VGGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIR 93

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +  L Q+G       ++ G    F    G               LD   F   + AL + 
Sbjct: 94  KSRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQT 142

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP- 325
                ++ P +       A+F S      K +   T    +    YG +++  P +    
Sbjct: 143 GDATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDA 200

Query: 326 GRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            ++ + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+
Sbjct: 201 SQVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDV 260

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
            +    IP L+ IP++G LFR      E+        P L++  A     +P +     D
Sbjct: 261 TRRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPAD 320

Query: 439 DA 440
           +A
Sbjct: 321 NA 322


>gi|282890886|ref|ZP_06299403.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
 gi|281499240|gb|EFB41542.1| putative type III secretion protein SctC [Parachlamydia
           acanthamoebae str. Hall's coccus]
          Length = 956

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 61/368 (16%), Positives = 119/368 (32%), Gaps = 73/368 (19%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDSQR 159
           L    G  +     LI   +  L  +    +A  N ++    S++++  G V +I+  + 
Sbjct: 555 LQYRKGADIQQALSLIGASLNRLGQSNDDLVATINTVQWLESSNSLIFTGTVESIRKLEE 614

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            +   +T L                          QV +++ I ++  D   Q G     
Sbjct: 615 LIAELDTPL-------------------------RQVFIEMLILDISLDDSLQYGVNWGT 649

Query: 220 TGSSSGPSKSFAADFGGKFVSEG------------------------------------G 243
                  + S A       +                                       G
Sbjct: 650 RFGGGNVAGSQAFLSDASTLPAALDTTGIVNNRGITTGQTLLPNASGLARLPGYNLGVLG 709

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                G L   S   ++ A+   T    +  P +      +A    G    ++T S S  
Sbjct: 710 QNVSLGNLTFDSIGALVKAIHDKTNTNIIMNPKILTEDNVTAEIFVGFNTPFQTQSISNI 769

Query: 304 -----ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYR 352
                A +    + G     TP + +   + L I+ EVS       +  +      P+ R
Sbjct: 770 GGTPIANNFEFRNVGTTFKVTPFLGNNDIVTLEIREEVSSVASTTTSDVLNTALPGPTTR 829

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           + +  T V +P    +VL+G+++D+  + +  +P L  +PI+GA F +   +  +  I I
Sbjct: 830 LSRTTTRVHVPDKYFLVLSGMMQDEDTRRRVNVPCLGGLPIIGAAFSDKTVSDAKRNIMI 889

Query: 413 AATPFLVK 420
              P ++ 
Sbjct: 890 FIRPEIID 897


>gi|15042148|gb|AAK81929.1|AF292566_13 RscC [Pseudomonas fluorescens]
          Length = 713

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 46/326 (14%), Positives = 92/326 (28%), Gaps = 20/326 (6%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
             ++  L   L   +  +N     +     +       +   R                 
Sbjct: 253 TPNVPRLGNPLLGQMLGANGNAGQLDTGPTVTPRAPVSKSRIRVEADVRNNAVLIYDLPE 312

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
             +  + ++  L++A +  + +   I ++ R  L++ G       S      + A     
Sbjct: 313 RQAMYRDLITQLDVARKL-IEIDAIILDIERTQLREFGVNWGFQNSRFRGGVNMAPGTSS 371

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
           +   +  D     +                     ++ P++  +  Q A           
Sbjct: 372 QVSIDHRDRFYADMPSTGG----------QGPATMVSNPSVLTLENQPAVIDFNRTQYIS 421

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                     VT    G  L   P V +     +I L +  E           D     V
Sbjct: 422 PGRDYATILPVT---VGTSLQVVPRVTTGRGVHQIHLVVDIEDGNLDETNPERDPNHLDV 478

Query: 354 RK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEI 410
           R+    T   +    ++V+ G    D    ++ IPLL  IP+LG  L  ++  +    E 
Sbjct: 479 RRGKVSTQAVMQEKRSLVVGGFHVTDSSDQQKKIPLLGDIPLLGKTLVSSTERHNNRRER 538

Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSV 436
               TP ++          P D  + 
Sbjct: 539 LFILTPRVIGDQDDPSRYLPQDDQAE 564


>gi|53716218|ref|YP_106182.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|124381659|ref|YP_001025783.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
 gi|126446314|ref|YP_001077867.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|254201058|ref|ZP_04907423.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|254205023|ref|ZP_04911376.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|254359145|ref|ZP_04975417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|52422188|gb|AAU45758.1| type II/III secretion system protein [Burkholderia mallei ATCC
           23344]
 gi|126239168|gb|ABO02280.1| type II/III secretion system protein [Burkholderia mallei NCTC
           10247]
 gi|147748670|gb|EDK55745.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei FMH]
 gi|147754609|gb|EDK61673.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei JHU]
 gi|148028332|gb|EDK86292.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei 2002721280]
 gi|261826429|gb|ABM99750.2| type II/III secretion system protein [Burkholderia mallei NCTC
           10229]
          Length = 599

 Score =  127 bits (318), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|254175910|ref|ZP_04882568.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
 gi|160696952|gb|EDP86922.1| type II/III secretion system protein [Burkholderia mallei ATCC
           10399]
          Length = 599

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|187734437|ref|YP_001883208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
 gi|187426933|gb|ACD06208.1| type III secretion outer membrane protein MxiD [Shigella boydii CDC
           3083-94]
          Length = 566

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|242316560|ref|ZP_04815576.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
 gi|242139799|gb|EES26201.1| general secretion pathway protein D [Burkholderia pseudomallei
           1106b]
          Length = 235

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 69/144 (47%), Gaps = 4/144 (2%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           + GQ+    +G      + +++    +    D G+ LH  P +   G + L++ TE S  
Sbjct: 1   MVGQNVPIPTGSYSNLTSGTTANAFNTYDRRDVGLTLHVKPQITEGGILKLQLYTEDSAV 60

Query: 340 VIGVNAGDM----PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           V G N        P++  R   +TV   +G  IVL GL++D+ Q     +PLL  IP +G
Sbjct: 61  VPGTNTTSANSPGPTFTKRSIQSTVLADNGEIIVLGGLMQDNYQVSNTKVPLLGDIPWIG 120

Query: 396 ALFRNSRFNREETEIFIAATPFLV 419
            LFR+    R++T + +   P ++
Sbjct: 121 QLFRSEGKTRQKTNLMVFLRPVII 144


>gi|94969024|ref|YP_591072.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
 gi|94551074|gb|ABF40998.1| type II and III secretion system protein [Candidatus Koribacter
           versatilis Ellin345]
          Length = 764

 Score =  126 bits (317), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 56/331 (16%), Positives = 121/331 (36%), Gaps = 23/331 (6%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           +     ++    ++  L  T+R  +  + ++       +V+ G    +   Q+ ++  + 
Sbjct: 244 RTFYLSNLSQPTELQDLVNTIRTIVEVNRVQQLPTQGAIVVRGTPDQVALVQKLIDDIDK 303

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
              +          SK  M  L I      ++ V++A      L      ++   +++G 
Sbjct: 304 ARPEVVVEVAVMQVSKTKMRNLGIQPPS--SISVSMA----SNLSSNNNNNNNNNNNNGN 357

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSF-----ETVLHALERATAIRTLAEPTLTAIS 281
                   G    + G   +    L+  +F         + L      + +  P++ A+ 
Sbjct: 358 GNGNGTGTGTDNSNGGISLNDLAHLNATNFILTVPTATANFLFSDADTKLIQNPSIRAVD 417

Query: 282 GQSASFTSGGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
           GQ A+   G +    T S   G           T     D GV +  TP + +   + ++
Sbjct: 418 GQKATLKIGDRIPVATGSFQPGIGGVGINPLVNTQFNYIDVGVNIDITPRIHANNEVSMK 477

Query: 332 IQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +  +VS       +     P+   RK +  + L  G   +L G+L+ +  +   G+P LS
Sbjct: 478 LVLDVSSVTGYQNIGGIQQPTIGQRKIEHEIRLKDGEINLLGGILQSEDDKTIAGLPYLS 537

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +IP+L   F      + ++E+     P +V+
Sbjct: 538 QIPLLRYFFSTDNKTKSDSEVVFVVIPHIVR 568


>gi|194435190|ref|ZP_03067420.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
 gi|194416569|gb|EDX32708.1| type III secretion outer membrane pore, YscC/HrcC family [Shigella
           dysenteriae 1012]
          Length = 566

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|53722615|ref|YP_111600.1| type III secretion system protein [Burkholderia pseudomallei
           K96243]
 gi|52213029|emb|CAH39067.1| putative type III secretion system protein [Burkholderia
           pseudomallei K96243]
          Length = 601

 Score =  126 bits (317), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|76819172|ref|YP_335807.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1710b]
 gi|226198470|ref|ZP_03794038.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254264542|ref|ZP_04955407.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
 gi|254301393|ref|ZP_04968837.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|76583645|gb|ABA53119.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710b]
 gi|157811287|gb|EDO88457.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 406e]
 gi|225929527|gb|EEH25546.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pakistan 9]
 gi|254215544|gb|EET04929.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1710a]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|126457187|ref|YP_001076198.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 1106a]
 gi|242313849|ref|ZP_04812866.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
 gi|126230955|gb|ABN94368.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106a]
 gi|242137088|gb|EES23491.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1106b]
          Length = 599

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|217425129|ref|ZP_03456624.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
 gi|217391734|gb|EEC31761.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 576]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|237508433|ref|ZP_04521148.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
 gi|235000638|gb|EEP50062.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei MSHR346]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|82524589|ref|YP_406184.1| MxiD [Shigella dysenteriae Sd197]
 gi|81243987|gb|ABB64696.1| MxiD [Shigella dysenteriae Sd197]
          Length = 566

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 103/325 (31%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D        V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAKNDLMPPFNITQKVSEDGNDFSFSSVTNNSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSL 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|126445193|ref|YP_001063243.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia pseudomallei 668]
 gi|126224684|gb|ABN88189.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 668]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|254185101|ref|ZP_04891690.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
 gi|184215693|gb|EDU12674.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 1655]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|134281959|ref|ZP_01768665.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
 gi|134246488|gb|EBA46576.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei 305]
          Length = 601

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|94985829|ref|YP_605193.1| type II and III secretion system protein [Deinococcus geothermalis
           DSM 11300]
 gi|94556110|gb|ABF46024.1| type IV pilus assembly protein PilQ [Deinococcus geothermalis DSM
           11300]
          Length = 673

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 77/427 (18%), Positives = 147/427 (34%), Gaps = 40/427 (9%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV--PVDVQDVLVS 72
            L S+     K+ P+ +    VI     ++     +   +++        P  VQ V   
Sbjct: 266 ALLSAQYPELKVTPVGQTGQLVITGPQNQLDAALALLAQVDRPAPAPQAGPQTVQRVF-- 323

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI-LIERDIAHLEMTLRRFI 131
                   + +     +     G     L   +G      ++ +   D     +T+    
Sbjct: 324 -------QLVNASAEEVKATLEGTLARDLTPANGNAQTLANVPVNATDANGNPITVTVPT 376

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
             S+      S+             +    +     L   G  +     ++ V  L  + 
Sbjct: 377 TGSSAGQTANSNAQQPQQAAPNSNGATIIADKRTNTLIVRGTPEQVTQIAELVPQLDQV- 435

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
              Q+ ++V I E+     + +G    +       S              G  F     L
Sbjct: 436 -VPQINVQVRIQEITETAARTLGLDWKVNFGGFNVSVGSGG--------LGATFDPTQSL 486

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQ----SASFTSGGQHLYKTVSSSTGATSV 307
             F+    L ALE     + + +  +T  SGQ    SA+ T            S G   +
Sbjct: 487 VGFNIFPTLQALENQGLTKRVYDGNITMQSGQRSLGSATNTQNASANAAASIKSGGRLEI 546

Query: 308 T----------THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRV 353
                        DYG+ L F  P V   G + LR++ +V+     +    +P+   +  
Sbjct: 547 NIPSSSGNIEKQIDYGLNLDFFDPQVAPDGTVTLRVRGQVNNIAGTLPTTSVPNLLNFTN 606

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +A +T+   SG T++++GLL     +  +G+P LS +P++GA F      RE++++ + 
Sbjct: 607 SEAQSTITFKSGQTVLMSGLLGTTESRTNDGVPFLSSLPVIGAAFGKQTTRREQSQLLVI 666

Query: 414 ATPFLVK 420
            T  +VK
Sbjct: 667 ITGSVVK 673


>gi|45751739|emb|CAF25120.1| InvG protein [Burkholderia pseudomallei]
          Length = 270

 Score =  126 bits (316), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 55/284 (19%), Positives = 106/284 (37%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 1   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 59

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 60  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 108

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 109 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 166

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 167 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 226

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 227 RTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 270


>gi|254194240|ref|ZP_04900672.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
 gi|169650991|gb|EDS83684.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei S13]
          Length = 601

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 365 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 424

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 425 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 484

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 485 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 541

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 542 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 601


>gi|254186924|ref|ZP_04893440.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934608|gb|EDO90278.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 599

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 88/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGRTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 599


>gi|332297951|ref|YP_004439873.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
 gi|332181054|gb|AEE16742.1| type II and III secretion system protein [Treponema brennaborense
           DSM 12168]
          Length = 667

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 93/252 (36%), Gaps = 15/252 (5%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I + ++      G   S++  S G       + G          +V G L    F   ++
Sbjct: 414 ILQYQKSSNLSWGITSSMSPLSPGNKTLVTGELGNLLNLSFDAITVFGYL----FAARIN 469

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTS------GGQHLYKTVSSSTGATSVTTHDYGVV 315
           A           + TL  +SGQ  +F +         ++                  G+V
Sbjct: 470 AALSKNEANVFTDTTLYGVSGQKITFKNTNTFRYRDSNIDPQTGKPLYTGITREIISGLV 529

Query: 316 LHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           L     +   G + + +   VS+    +    G+ P    +   T V+  SG  +VL+GL
Sbjct: 530 LEIDGWISGDGMVTMDVTASVSKRGVDVSTKTGNPPPTSEKIVTTQVKARSGEPVVLSGL 589

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
            ++D   +++G+P +S+IP+LG LF++     E+ E+ I   P +      +  SR  D 
Sbjct: 590 TQNDKTFVEQGVPFISRIPVLGNLFKSRDETEEKNEMVIYLVPHI---EETQTDSRGTDT 646

Query: 434 YSVEDDAKAFFF 445
                  +    
Sbjct: 647 RKRAAYEELVLN 658


>gi|45751675|emb|CAF21321.1| InvG protein [Burkholderia mallei NCTC 10247]
          Length = 272

 Score =  126 bits (316), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 55/285 (19%), Positives = 106/285 (37%), Gaps = 22/285 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+
Sbjct: 2   AGVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRK 60

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
             L Q+G       ++ G    F    G               LD   F   + AL +  
Sbjct: 61  SRLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTG 109

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
               ++ P +       A+F S      K +   T    +    YG +++  P +   G 
Sbjct: 110 DATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGS 167

Query: 327 RIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           ++ + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ 
Sbjct: 168 QVEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVT 227

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           +    IP L+ IP++G LFR      E+        P L++  A 
Sbjct: 228 RRTFRIPGLASIPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 272


>gi|167615580|ref|ZP_02384215.1| type III secretion system protein BsaO [Burkholderia thailandensis
           Bt4]
          Length = 351

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/300 (18%), Positives = 111/300 (37%), Gaps = 22/300 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 49  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 107

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 108 RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 156

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 157 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 214

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 215 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 274

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDA 440
               IP L+ +P++G LFR      E+        P L++  A     +P +     D+A
Sbjct: 275 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAAWPDGQPWESGGPADNA 334


>gi|254412671|ref|ZP_05026444.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180406|gb|EDX75397.1| Bacterial type II and III secretion system protein [Microcoleus
           chthonoplastes PCC 7420]
          Length = 979

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 87/208 (41%), Gaps = 18/208 (8%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH---- 310
            F   L A   +   + L +PT+    GQ+A+     + +    S +  A  +TT     
Sbjct: 767 DFLAQLQAQITSGNAKILTDPTIVVQEGQTATVNLTQEVVGNIRSETESADGLTTRTVTA 826

Query: 311 ---DYGVVLH-FTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADT-T 359
              + G++L      +   G + L +  EV+         IG +   +     R+  +  
Sbjct: 827 EIREAGLILELIVDRIDDNGFVTLAVNPEVTSIGSVQNLSIGDDTNQIALLNTRELTSGQ 886

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G++++  +     +P+L  +PILGALFR++    +  E+ +  TP ++
Sbjct: 887 IRLRDGQTLILSGIIQESDRTTVRKVPILGDLPILGALFRSTERQNQRQEVIVLLTPQIL 946

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
                        +Y+   +A+     R
Sbjct: 947 DDSERGAFGY---NYTPGREAQEVLQRR 971


>gi|320334143|ref|YP_004170854.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
 gi|319755432|gb|ADV67189.1| type II and III secretion system protein [Deinococcus maricopensis
           DSM 21211]
          Length = 676

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 79/428 (18%), Positives = 157/428 (36%), Gaps = 55/428 (12%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV-PVDVQDVL-VS 72
            L  +     ++ P+      VI     +I     +   +++ ++ Q  P  VQ V  + 
Sbjct: 282 ALLGAQYPNLRVTPVGSTGQLVITGPQNQIEAALGLLAQVDRPVVAQSGPQVVQRVFQLV 341

Query: 73  DPTKADVVVHSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +    +V      T+   L G     A        G                   T    
Sbjct: 342 NAGADEVKATLEGTLQRDLTGDPASSAATTTSNTAGSTTSGAATTSPAQTGASATTAATT 401

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI 190
              + I  +  ++++++ G         +  +++                 + +  L  +
Sbjct: 402 GNGATIISDKRTNSLIVRGT------QAQVTQIA-----------------ELIPQLDQV 438

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ ++V I E+     + +G   +      G      A  G + +     F     
Sbjct: 439 --VPQINVQVRIQEINETAARTLGVDWNA---GFGNFVVRIAQTGLQAL-----FDPTRA 488

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQS--------------ASFTSGGQHLYK 296
           L   +    L+ALE     + + + ++T  SGQ               AS T       +
Sbjct: 489 LAGINLGATLNALETQNMTKRVYDGSVTMQSGQRSVGTAGGAQNASSGASATIKSGGRLE 548

Query: 297 TVSSSTGATSVTTHDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YR 352
               S     V   DYGV L F  P V   G I LR++ +V++P   +  G +P+   + 
Sbjct: 549 VTIPSESGNIVRQIDYGVNLDFIDPQVAPDGTITLRVRGQVNQPASPITGGTLPNLLNFT 608

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
             +A TT+   SG T++L+GLL  +  + + G+P LS +P++G LF   + ++ ++++ +
Sbjct: 609 NSEAQTTITFKSGQTVLLSGLLGTNESRNRTGVPFLSSLPVIGGLFGTEQTSKTQSQLLV 668

Query: 413 AATPFLVK 420
             T  +V+
Sbjct: 669 VITGTVVR 676


>gi|256259410|gb|ACU65047.1| HrcC [Pseudomonas syringae pv. syringae]
          Length = 701

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I +V R  + ++     ++  +           GG  ++E G  S   V D+  
Sbjct: 317 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 367

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE   +   +  P++  +  Q A        + + V       +      G  
Sbjct: 368 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 425

Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P  +         I L +  E  +        + PS R     T   +    ++V+
Sbjct: 426 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 485

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            G    +  +  + +P LS IPILG  LF      +   E     TP LV
Sbjct: 486 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 535


>gi|13449092|ref|NP_085308.1| Type III secretion protein [Shigella flexneri 5a]
 gi|547951|sp|Q04641|MXID_SHIFL RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|13310640|gb|AAK18464.1|AF348706_153 Type III secretion protein [Shigella flexneri 5a]
 gi|47042|emb|CAA47644.1| MXID [Shigella flexneri]
 gi|12329089|emb|CAC05820.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri]
          Length = 566

 Score =  126 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|167003376|ref|ZP_02269162.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
 gi|243061081|gb|EES43267.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei PRL-20]
          Length = 599

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 89/240 (37%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 363 ALKQLGVDWRAHNSHFDLQTGTGLTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLS 422

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 423 LTAVLGDAGRYLLARINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 482

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 483 --LYSISTGVSLRVLPMVVDEGGCTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAF 539

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P++GALFR++      +E F   TP +++P
Sbjct: 540 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLVGALFRSTDKQNSHSERFFLVTPRVIEP 599


>gi|74314944|ref|YP_313362.1| MxiD [Shigella sonnei Ss046]
 gi|73858421|gb|AAZ91127.1| MxiD [Shigella sonnei Ss046]
          Length = 566

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|2495097|sp|Q55293|MXID_SHISO RecName: Full=Outer membrane protein mxiD; Flags: Precursor
 gi|829072|dbj|BAA09154.1| ORF14 [Shigella sonnei]
          Length = 566

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|333011815|gb|EGK31216.1| hypothetical protein SFK227_5449 [Shigella flexneri K-227]
 gi|333011862|gb|EGK31255.1| hypothetical protein SFK227_5390 [Shigella flexneri K-227]
          Length = 566

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 53/300 (17%), Positives = 100/300 (33%), Gaps = 22/300 (7%)

Query: 131 IADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS--ETFLSQSGRNQYANSSSKKVMNL 187
           +   NI  ++  D+       V      +    ++  ET       N       + ++  
Sbjct: 234 MPPFNITQKVSEDSNDFSFSSVTNSSVLEDVSLIAYPETNSILVKGNDQQIQIIRDIITQ 293

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L++A    + L + I ++ +  L  +G            + SF   FG  F       + 
Sbjct: 294 LDVAKRH-IELSLWIIDIDKSELNNLGVNWQ-------GTASFGDSFGASF--NMSSSAS 343

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
              LD   F   + AL +      ++ P +       A F +        V      +S+
Sbjct: 344 ISTLDGNKFIASVMALNQKKKANVVSRPVILTQENIPAIFDNNRTFYVSLVGERN--SSL 401

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTV 360
               YG +++  P   S G+I + +  E        +      N   +P     K  T  
Sbjct: 402 EHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQSNYNYNNENTSVLPEVGRTKISTIA 461

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +P G ++++ G   +        IP LS IP++G +F+    N           P  +K
Sbjct: 462 RVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIGNVFKYKTSNISNIVRVFLIQPREIK 521


>gi|83717709|ref|YP_438974.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
 gi|83651534|gb|ABC35598.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 605

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P+    +  G       +     S+  VL          
Sbjct: 384 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 443

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE +   RT A P +T +    A   +  Q   +    ++    + +   GV L   
Sbjct: 444 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 501

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   D
Sbjct: 502 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 560

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 561 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|332711134|ref|ZP_08431068.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
 gi|332350116|gb|EGJ29722.1| type II secretory pathway, component HofQ [Lyngbya majuscula 3L]
          Length = 810

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 16/227 (7%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLA 273
           F     G ++ P +    D   +      +FS+  + +    F   L A   ++  + L 
Sbjct: 557 FARPGFGRNNNPFQPGVTDVQRQDDGNEFEFSLPSLFEYPDKFLLTLQAQITSSNAKILT 616

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-------DYGVVLHF-TPTVLSP 325
           +PTL    GQ AS     + L    +       V T        + G+ L      +   
Sbjct: 617 DPTLVIQEGQEASVKLVQEVLTSVTTDIDLDGGVATRTITPVIEEAGLTLTVNVDRIDDN 676

Query: 326 GRIGLRIQTEVSEPVIG------VNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
           G I L     ++ P             ++     R+  +  V L  G T++L+G+++D  
Sbjct: 677 GFITLSTSPVITAPSGTQEFNSDNAQNEITFLSRRELSSGLVRLRDGQTLILSGIIQDTD 736

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           +     +P+L  IP+LGALFR++    + +E+ I  TP ++      
Sbjct: 737 RTTVSKVPILGDIPLLGALFRSTNKQNQRSEVIILVTPQIMDDTDRN 783


>gi|257142080|ref|ZP_05590342.1| type II/III secretion system protein [Burkholderia thailandensis
           E264]
          Length = 598

 Score =  125 bits (314), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P+    +  G       +     S+  VL          
Sbjct: 377 VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 436

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE +   RT A P +T +    A   +  Q   +    ++    + +   GV L   
Sbjct: 437 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 494

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   D
Sbjct: 495 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 553

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 554 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 598


>gi|45751671|emb|CAF21319.1| InvG protein [Burkholderia thailandensis]
          Length = 285

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 6   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 65  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275


>gi|31983567|ref|NP_858278.1| outermembrane protein MxiD [Shigella flexneri 2a str. 301]
 gi|18462559|gb|AAL72331.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri 2a
           str. 301]
 gi|281603900|gb|ADA76883.1| MxiD, outermembrane protein of the secretin family, component of
           the Mxi-Spa secretion machinery [Shigella flexneri
           2002017]
 gi|333003155|gb|EGK22704.1| hypothetical protein SFK218_2878 [Shigella flexneri K-218]
 gi|333020387|gb|EGK39651.1| hypothetical protein SFK304_1148 [Shigella flexneri K-304]
          Length = 566

 Score =  125 bits (314), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/325 (17%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L+IA    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 436

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 437 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIISIPFLSSIPVIG 496

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 497 NVFKYKTSNISNIVRVFLIQPREIK 521


>gi|302185350|ref|ZP_07262023.1| type III outer membrane protein HrcC [Pseudomonas syringae pv.
           syringae 642]
          Length = 690

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/230 (20%), Positives = 79/230 (34%), Gaps = 17/230 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + +   I +V R  + ++     ++  +           GG  ++E G  S   V D+  
Sbjct: 306 IEIDAIIVDVDRSQMDELSSNWGLSAGNFS---------GGANIAENGRSSTMFVQDQDK 356

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L ALE   +   +  P++  +  Q A        + + V       +      G  
Sbjct: 357 FFAGLRALEGNGSATVIGNPSVLTLENQPAVIDFSQTEILEAV--GERVANFQPLTAGTS 414

Query: 316 LHFTPTVL-----SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           L   P  +         I L +  E  +        + PS R     T   +    ++V+
Sbjct: 415 LQVIPRSITASGAKNQMIQLVVDIEDGQIEESNIRAEQPSVRRGNVSTQAVIAEKASLVV 474

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
            G    +  +  + +P LS IPILG  LF      +   E     TP LV
Sbjct: 475 GGFHVYENNERTKKVPYLSAIPILGKLLFTARERGQSNRERLFILTPRLV 524


>gi|78779577|ref|YP_397689.1| Type II secretory pathway component PulD-like [Prochlorococcus
           marinus str. MIT 9312]
 gi|78713076|gb|ABB50253.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9312]
          Length = 556

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 79/250 (31%), Gaps = 28/250 (11%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + QV L V + +V             +   S  P             S      +   
Sbjct: 288 KRQKQVALNVKVLDVNLSDKDSFSQSWFLPFGSGSPYIIT--------QSPNLKAGIGPD 339

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISG---------------QSASFTSGGQHLY 295
                  + L A  +    + LA PTL                           G Q   
Sbjct: 340 RLGKFVSSELTASIQKGTTKVLASPTLILNESGGSAGDGSSIGRRLANEGFVEVGDQVPV 399

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEPVIG---VNAGDMPSY 351
                     + T    G+ L      +   R +   +   V+         N G++   
Sbjct: 400 NATFVEGSGCNFTYDLVGIKLGAKVLGIDRNRFVTFAMTPIVTGISGTQTITNCGEVNLL 459

Query: 352 RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             R+ DT  V + +G T+VL G+++D   +     P+L  +PI+G LFR++     + E+
Sbjct: 460 NTRRLDTGAVRIKNGETLVLTGVIQDSDIETLVKFPILGDLPIMGPLFRSTSKEVGKREL 519

Query: 411 FIAATPFLVK 420
            +  TP ++ 
Sbjct: 520 IVLVTPRIID 529


>gi|45751693|emb|CAF21330.1| InvG protein [Burkholderia thailandensis ATCC 700388]
          Length = 282

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 6   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 64

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 65  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 113

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 114 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 171

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 172 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 231

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 232 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 275


>gi|167566263|ref|ZP_02359179.1| type II/III secretion system protein [Burkholderia oklahomensis
           EO147]
          Length = 311

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/226 (20%), Positives = 87/226 (38%), Gaps = 12/226 (5%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGK------FVSEGGDFSVKGVLDRFSFET 258
           +       +  Q+S    S  P+    +  G            G   +            
Sbjct: 89  IDLQTGTGLTAQNSYANGSLNPTFGSISLSGNGDSVGVPASPLGLSLTAVLGDAGRYLLA 148

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF 318
            ++ALE +   RT A P +T +    A   +  Q   +    ++    + +   GV L  
Sbjct: 149 RINALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRV 206

Query: 319 TPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   
Sbjct: 207 LPMVVEEGGHTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKV 265

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           D       G+P+LSK+P++GALFR++      TE     TP +++P
Sbjct: 266 DSRSSTLSGVPVLSKLPLVGALFRSTDKQDSHTERLFLVTPRVIEP 311


>gi|167577363|ref|ZP_02370237.1| type II/III secretion system protein [Burkholderia thailandensis
           TXDOH]
          Length = 605

 Score =  125 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 46/240 (19%), Positives = 87/240 (36%), Gaps = 30/240 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS------------- 255
            LKQ+G       S               + +   + +   +    +             
Sbjct: 369 ALKQLGVDWRAHNSHFDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLS 428

Query: 256 -----------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          + ALE +   RT A P +T +    A   +  Q   +    ++  
Sbjct: 429 LTAVLGDAGRYLLARIDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD 488

Query: 305 TSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
             + +   GV L   P V+  G   +I L ++  V   +      ++P     + +T   
Sbjct: 489 --LYSISTGVSLRVLPMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAF 545

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G  +++AG   D     + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 546 IEQGQALLIAGYKVDARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 605


>gi|255531011|ref|YP_003091383.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
 gi|255343995|gb|ACU03321.1| type II and III secretion system protein [Pedobacter heparinus DSM
           2366]
          Length = 655

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 94/244 (38%), Gaps = 18/244 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
             V ++VT+ ++R+    + G +  +  S      +  +       +   +  +  +   
Sbjct: 410 PMVLIEVTLLDIRKGHTTKTGIEAGLADSVVRTRGTVLSGVDMTLGAGSINNLLGKIGSN 469

Query: 254 F---------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---- 300
                     +F   L+ALE    I     P L  ++G +A+ + G    Y T +     
Sbjct: 470 SVFNIGKVTPNFYVKLNALEANNNIEIRQVPKLATLNGHTANLSIGTTRYYVTKTQNVFS 529

Query: 301 -----STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                +         D  + +  +P V    ++ L+I+ E+S+ +    A   P     K
Sbjct: 530 SVNTQTVFTEQFNKVDANLAIGISPVVSGDDQVTLKIKVEISDFIGTPPANAPPPTSTSK 589

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            ++ +   +   IVL G+ + +      G+PLLS+IP+L  +F +    + +    +   
Sbjct: 590 FESIIRAHNEDMIVLGGMERSEKSDSGSGVPLLSRIPVLKWIFSSREQTKSKVVTLVFIK 649

Query: 416 PFLV 419
           P ++
Sbjct: 650 PTII 653


>gi|254491741|ref|ZP_05104920.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxidans DMS010]
 gi|224463219|gb|EEF79489.1| Bacterial type II and III secretion system protein [Methylophaga
           thiooxydans DMS010]
          Length = 743

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 55/279 (19%), Positives = 105/279 (37%), Gaps = 31/279 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           ++++ ++I    QV L++ I  V         F   +  S    S+  A       ++ G
Sbjct: 307 QLIHSMDIPVP-QVMLEMRILSVILGEDFNSIFNFELQPSGGNQSQQPALLGNNALLNSG 365

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-- 300
              +             L  LE    +R L+ P + A + + A    G + L        
Sbjct: 366 ---TFVYEFLNSRLRANLEFLEENNRVRVLSNPMIVASNHRQAELFIGAETLLTDGFEFF 422

Query: 301 ------------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------------V 336
                       S     V   D G+ L  TP +     + L I+ E            +
Sbjct: 423 PAIIDNGVVIQPSYVQAIVNREDIGITLRITPRINGDETVELLIEQENSTVNPGGGSVPI 482

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           ++    V    + +    +   TV    G T+ + GL++    + +  +P+LS+IP+LG 
Sbjct: 483 TDGNGTVQNLPVDTVDTARLTGTVMAKDGLTVAVGGLIRTSKNKNERKVPVLSEIPVLGR 542

Query: 397 LFRNSRFNREETEIFIAATPFLVK-PVAMRDLSRPDDHY 434
           +FR++  + +ETE  +  TP ++  P     L + D+ +
Sbjct: 543 IFRSTTESEQETETVLLITPRVMNVPEESEKLRQTDNRF 581


>gi|886477|emb|CAA90274.1| SepC [Escherichia coli]
          Length = 512

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/247 (19%), Positives = 96/247 (38%), Gaps = 23/247 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+ + V+I +V  + L+Q+G   S T ++   + +F +       +   + S   + + 
Sbjct: 274 RQIEISVSIIDVDANDLQQLGVNWSGTLNAGQGTIAFNSS------TAQVNISSSVISNA 327

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
            +F   ++AL++ +  + L++P++  ++   A          K   S     S+ +   G
Sbjct: 328 SNFMIRVNALQQNSKAKILSQPSIITLNNMQAILDKNVTFYTKV--SGEKVASLRSITSG 385

Query: 314 VVLHFTPTVLSPGRIGLRI---------------QTEVSEPVIGVNAGDMPSYRVRKADT 358
            +L  TP +L      L                     ++      +  +P  +  +  T
Sbjct: 386 TLLRVTPRILDDSSNSLTGKRRERVRLLLDIQDGNQSTNQSNAQDASSTLPEVQNSEMTT 445

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
              L +G    LA L K      K+GIPLLS IP++G+LF ++   +             
Sbjct: 446 EATLSAGKVYYLADLSKIKKVPSKDGIPLLSDIPVIGSLFSSTVKQKHSVVRLFLIKATP 505

Query: 419 VKPVAMR 425
           +K  +  
Sbjct: 506 IKSASSE 512


>gi|257470110|ref|ZP_05634202.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 563

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           + +     + +L     +  +S R   + +  +      + +  S+ +++  L+     Q
Sbjct: 228 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 283

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248
           V +   I +V  ++ + +GF    + S     + G   S        G  VS G   ++ 
Sbjct: 284 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 343

Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              +  +      ++ L+    +   A P++    G+   F    + +          T 
Sbjct: 344 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 403

Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349
            T       + G++L   P +   G I L++  EVS                G    +  
Sbjct: 404 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 463

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R  +TTV++  G TI + GL +  +Q L   IP L  +P++   F+N    RE T+
Sbjct: 464 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 523

Query: 410 IFI 412
           I+I
Sbjct: 524 IYI 526


>gi|325280193|ref|YP_004252735.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324312002|gb|ADY32555.1| type II and III secretion system protein [Odoribacter splanchnicus
           DSM 20712]
          Length = 628

 Score =  124 bits (312), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 61/353 (17%), Positives = 124/353 (35%), Gaps = 50/353 (14%)

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
             +YLFG               +    + +         E+      AD  I      ++
Sbjct: 307 NGVYLFGAQE-------QQKILRTTAVIPLRYRTVENVPELIPEALKADMQIGAFAEQNS 359

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAE 204
           +++ G  R I   ++ V   +  +                           +T++V I +
Sbjct: 360 LIVSGTSRQIASLRQFVGAIDRTVPL-------------------------ITIEVLIVD 394

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD---------RFS 255
            ++  L++ G    +       +   +        +   +  +                +
Sbjct: 395 SKKSSLREAGITAGLGEKPVKTAGRLSPGVDFTLSAASVNRLIHSFNGFGSVNLGKVTPN 454

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS--------- 306
           F   L ALE A  +   + P L+ ++G  AS  SG    YK V ++   T          
Sbjct: 455 FYLTLKALEEAGTLELRSTPKLSTLNGHEASLKSGETRYYKEVQNNIMGTQNPIQSESYT 514

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             + +  + L   P V S G+I L I+ E SE          P    R   + + + +  
Sbjct: 515 WKSTEADLSLKIVPYVSSDGKITLTIEIEQSEFTAREEKDAPPGTATRSFKSRIRVDNED 574

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            ++L G+ ++  ++   G+PL+++IP+L  LF  S  N+ + ++ I   P ++
Sbjct: 575 MVLLGGIDRNTREKGSSGLPLIARIPVLKWLFGVSTDNKVDEKLSIFIKPTVI 627


>gi|167948310|ref|ZP_02535384.1| General secretion pathway protein D [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 251

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 58/214 (27%), Positives = 89/214 (41%), Gaps = 11/214 (5%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-KSFAADFGGKFVS 240
           +  +  L++    QV ++ TIAEV        G +  + G+  G        +       
Sbjct: 39  EATIRKLDVP-PMQVLIEATIAEVSLTNNLSYGVRWFLQGNMGGSDKWQGGLNLPLPSGV 97

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
            G  FS+  +      +   + L   ++++ L+ P +  +  QSASF  G Q    T SS
Sbjct: 98  SGSGFSLGILNSMDELKLFFNLLNAQSSVKFLSAPQIMVVDNQSASFRVGDQIPIITRSS 157

Query: 301 STGA-------TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSY 351
            +         T V   D G +L  TP V   G + L I  EVS+P     V  G     
Sbjct: 158 QSTTNPDAPIVTEVQFRDTGTLLTVTPRVNVGGMVTLEISQEVSKPGSAPAVGGGGNVPI 217

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             R  D+TV + SG TI+L GL+ +     K+GI
Sbjct: 218 AQRTVDSTVVVNSGQTIILGGLISETSNDTKDGI 251


>gi|45751689|emb|CAF21328.1| InvG protein [Burkholderia thailandensis]
          Length = 277

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 53/284 (18%), Positives = 105/284 (36%), Gaps = 22/284 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 7   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 65

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 66  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 114

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 115 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 172

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 173 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 232

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
               IP L+ +P++G LFR      E+        P L++  A 
Sbjct: 233 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLRAGAA 276


>gi|167724326|ref|ZP_02407562.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei DM98]
          Length = 308

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 95  LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 154

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 155 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 212

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 213 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 271

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 272 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 308


>gi|67639552|ref|ZP_00438400.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
 gi|238520110|gb|EEP83573.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia mallei GB8 horse 4]
          Length = 380

 Score =  124 bits (311), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 167 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 226

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 227 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 284

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 285 CTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 343

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 344 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 380


>gi|167915591|ref|ZP_02502682.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 112]
          Length = 322

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 109 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 168

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 169 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 226

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 227 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 285

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 286 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 322


>gi|167907227|ref|ZP_02494432.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei NCTC 13177]
          Length = 327

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 114 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 173

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 174 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 231

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 232 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 290

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 291 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 327


>gi|323166425|gb|EFZ52190.1| hypothetical protein SS53G_3269 [Shigella sonnei 53G]
          Length = 476

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 119 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 178

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 179 YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 233

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 234 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 288

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 289 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 346

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 347 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 406

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 407 NVFKYKTSNISNIVRVFLIQPREIK 431


>gi|167820470|ref|ZP_02452150.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 91]
 gi|167828842|ref|ZP_02460313.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 9]
          Length = 315

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 102 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 161

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 162 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 219

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 220 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 278

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 279 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 315


>gi|197335747|ref|YP_002157088.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
 gi|197317237|gb|ACH66684.1| fimbrial assembly protein PilQ [Vibrio fischeri MJ11]
          Length = 562

 Score =  124 bits (310), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 75/429 (17%), Positives = 144/429 (33%), Gaps = 53/429 (12%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVP-----VDVQDVLVSDPTKADVVVHSPRT 86
                +      I      ++ +   +   +      V  Q VL        V     R 
Sbjct: 144 FQDIPVRHVLQLIADYNDFNLVVADSVTGNLTLRLDGVPWQQVL---DIILQVKGLDKR- 199

Query: 87  MYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVV 146
                   G   +I    +        +   +  + L       ++    +   +++ +V
Sbjct: 200 ------VEGNVVLIAPKTELDAQEQQVLEQAQMASELAALSSEILSIKYAKASDIAELLV 253

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
             G +  +           T            +  K +++ L+I  + QV ++  I  V 
Sbjct: 254 GEGEITMLSSRGSITVDERTNSLLLRDLPENITVIKDIIDTLDIPIK-QVQIEARIVTVN 312

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS---EGGDFSVKGVLDRFSFETVLHA- 262
              L ++G +  IT ++   +   + +     V     GG    K   +    +  L+  
Sbjct: 313 EGNLDELGVRWGITNTNGSTTVGGSIESNLAAVGLYDGGGSDDKKSGNNSLPVDDFLNVN 372

Query: 263 ------------------------------LERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                                         L+  +    ++ P L   + + A    G +
Sbjct: 373 LGLANPAASSIAFQVAKLGSDLLLDLELSALQAESKAEIISSPRLITTNKKPAYIEQGTE 432

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
             Y    SS+GATSV+     + L  TP +    R+ L +      P  V+    G+  +
Sbjct: 433 IPYLEA-SSSGATSVSFKKAVLSLMVTPQITPDNRLVLDLTVTQDRPGQVVKTGTGEAVA 491

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              ++  T V + +G T+VL G+ +  +    E +PLL  +P+LGALFR S  N  + E+
Sbjct: 492 IDTQRIGTQVLVDNGETVVLGGIYQHSLSNSVEKVPLLGDLPLLGALFRRSSENIGKKEL 551

Query: 411 FIAATPFLV 419
            I  TP +V
Sbjct: 552 LIFVTPKVV 560


>gi|167743291|ref|ZP_02416065.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 14]
 gi|167850302|ref|ZP_02475810.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei B7210]
 gi|167898903|ref|ZP_02486304.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei 7894]
          Length = 318

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 105 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 164

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 165 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 222

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 223 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 281

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 282 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 318


>gi|312171371|emb|CBX79630.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
          Length = 589

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 116/342 (33%), Gaps = 33/342 (9%)

Query: 94  VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
            G A V+    + KQ  +        I      +  L+   A+ +          + +  
Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
             G    I  +++       +   +      ++      + +++ ++I  + Q+ L + I
Sbjct: 283 ESGGNNDIAATEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V +D + ++G +   +        +F      +              +   F   + A
Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L +      ++ P +       A F +      K +   T  +S+    YG ++   P +
Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446

Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
                 I + +  +     ++          +P     +  T   +P G ++++ G  ++
Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +Q   GIPLL  IP +G LF  S  + ++        P L
Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548


>gi|292487263|ref|YP_003530135.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
 gi|291552682|emb|CBA19727.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
          Length = 589

 Score =  124 bits (310), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%)

Query: 94  VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
            G A V+    + KQ  +        I      +  L+   A+ +          + +  
Sbjct: 223 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 282

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
             G    I   ++       +   +      ++      + +++ ++I  + Q+ L + I
Sbjct: 283 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 341

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V +D + ++G +   +        +F      +              +   F   + A
Sbjct: 342 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 388

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L +      ++ P +       A F +      K +   T  +S+    YG ++   P +
Sbjct: 389 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 446

Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
                 I + +  +     ++          +P     +  T   +P G ++++ G  ++
Sbjct: 447 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 506

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +Q   GIPLL  IP +G LF  S  + ++        P L
Sbjct: 507 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 548


>gi|218440223|ref|YP_002378552.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
 gi|218172951|gb|ACK71684.1| type II and III secretion system protein [Cyanothece sp. PCC 7424]
          Length = 734

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 74/179 (41%), Gaps = 14/179 (7%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----H 310
           F   L A   +   + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 525 FLLTLEAQITSGNAKILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQ 584

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VE 361
           D G+ L      +   G + L +   +       E   G    +  +   R+  T+  + 
Sbjct: 585 DAGLTLTVEVDRIDDNGFVSLFVSPTIAAPGASQEFESGDGTTNQLTLLTRRELTSGLIR 644

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  G T++L+G++ +  Q     +P+L  IPILGALFR +  +   +E+ +  TP ++ 
Sbjct: 645 MRDGQTLILSGIISESEQTTVSKVPILGDIPILGALFRRTDNSGSRSEVIVLLTPKIID 703


>gi|167923433|ref|ZP_02510524.1| type III secretion outer membrane pore, YscC/HrcC family protein
           [Burkholderia pseudomallei BCC215]
          Length = 319

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/217 (21%), Positives = 88/217 (40%), Gaps = 7/217 (3%)

Query: 209 ILKQIGFQHSITGSSSGP-SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  Q G+ +     + G  + S     G      G   +             ++ALE + 
Sbjct: 106 LTSQNGYANGTLNPTFGSITLSGNDSVGVPASPLGLSLTAVLGDAGRYLLARINALESSN 165

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG- 326
             RT A P +T +    A   +  Q   +    ++    + +   GV L   P V+  G 
Sbjct: 166 QARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVLPMVVDEGG 223

Query: 327 --RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             +I L ++  V   +      ++P     + +T   +  G  +++AG   D     + G
Sbjct: 224 RTQIKLDVRI-VDGELSQQTVDNIPVIVSNEINTQAFIEQGQALLIAGYKVDARSSTQSG 282

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +P+LSK+P++GALFR++      +E     TP +++P
Sbjct: 283 VPVLSKLPLVGALFRSTDKQNSHSERLFLVTPRVIEP 319


>gi|292900365|ref|YP_003539734.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291200213|emb|CBJ47341.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
          Length = 584

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/342 (14%), Positives = 115/342 (33%), Gaps = 33/342 (9%)

Query: 94  VGQANVILIGHDGKQMLNLDILIERDI---AHLEMTLRRFIADSNIRVEM----VSDTVV 146
            G A V+    + KQ  +        I      +  L+   A+ +          + +  
Sbjct: 218 PGVATVLNQLLNNKQANSGRNTTAAQITVDNSTQQALQAASANQDGNFRPLPIFAATSQA 277

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS----KKVMNLLNIAGEDQVTLKVTI 202
             G    I   ++       +   +      ++      + +++ ++I  + Q+ L + I
Sbjct: 278 ESGGNNDIAAIEQNSVNIVAYTDTNSLLVQGSARQVSFVEDLVSAIDIP-KQQIQLSLWI 336

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            +V +D + ++G +   +        +F      +              +   F   + A
Sbjct: 337 IDVSKDDINELGVRWQGSAKVGNGGITFNTSSLTQA-------------NSIHFLADVSA 383

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           L +      ++ P +       A F +      K +   T  +S+    YG ++   P +
Sbjct: 384 LAQKGNAHVVSRPEILTQENVPALFDNNSSFYAKMIGERT--SSLEKITYGTMISVLPRL 441

Query: 323 LS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
                 I + +  +     ++          +P     +  T   +P G ++++ G  ++
Sbjct: 442 DQYQHEIEMILNIQDGGLPLNLNGATETVDSLPVVSNTQISTEARVPVGYSLLVGGYSRN 501

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             +Q   GIPLL  IP +G LF  S  + ++        P L
Sbjct: 502 QDEQHSLGIPLLRDIPYMGRLFDYSYVSHKKMVRLFLIQPRL 543


>gi|188534044|ref|YP_001907841.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
 gi|188029086|emb|CAO96954.1| Type III secretion apparatus [Erwinia tasmaniensis Et1/99]
          Length = 592

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 109/283 (38%), Gaps = 26/283 (9%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIA 203
           V      +  D +    ++ T  +           +  + ++  ++++ + Q+ L + I 
Sbjct: 283 VFSSERPSAADIEAVRIVAYTDTNSLLVMGSERQVNFVEDLVKAIDVS-KRQIQLSLWII 341

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           ++ +  + ++G + S  G  +    +F                     +   F   + AL
Sbjct: 342 DISKKEINELGVKWSGAGKVNNTGVTFNTSSLTPE-------------NSIHFLADVSAL 388

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
            ++ + + ++ P +       A F +      K +   T  +S+    YG ++   P  L
Sbjct: 389 VKSGSAQVISRPEILTQENVPALFDNNSSFYAKLIGERT--SSLEKITYGTMISVLPR-L 445

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           + G+  + +   + +  + +NA         MP+    +  T   +P G ++++ G  +D
Sbjct: 446 ATGQQEIEMILNIHDGTVPLNAQGEPDKFDSMPTTSNTQISTEARVPLGHSLLVGGYSRD 505

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +Q   G+PLL  IP LG +F  S  ++ +        P L+
Sbjct: 506 QDEQHNIGVPLLRDIPYLGRIFNYSYKSQTKMVRIFLIHPELL 548


>gi|253581772|ref|ZP_04858996.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
 gi|251836121|gb|EES64658.1| general secretion pathway protein D [Fusobacterium varium ATCC
           27725]
          Length = 563

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 51/245 (20%), Positives = 90/245 (36%), Gaps = 26/245 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------SSSGPSKSFAADFGGKFVSEGGDFS 246
            QV +   I +V  ++ + +GF             S    S    A      VS G   +
Sbjct: 282 QQVRITSQILDVTDNLFETLGFDWLYNNVGSVEKNSGLDISLIGKAALDSAGVSFGSGIN 341

Query: 247 VKGVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           +    +  +      ++ L+    +   A P++    G+   F    + +          
Sbjct: 342 LVRQFNNGNDVLGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDN 401

Query: 305 TSVT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGD 347
           T  T       + G++L   P +   G I L++  EVS                G    +
Sbjct: 402 TEKTTYTPLFREAGIILKVKPLIKENGTIFLKVMIEVSNFRLKKNEKENMISEGGTYNSE 461

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             S   R  +TTV++  G TI + GL +  IQ L   +P L  +P++   F+N    +E 
Sbjct: 462 GGSKIGRSIETTVKMRDGETIFIGGLKRAVIQNLDSQVPFLGTLPVINIFFKNQSVKKEI 521

Query: 408 TEIFI 412
           T+I+I
Sbjct: 522 TDIYI 526


>gi|308095376|ref|ZP_05905407.2| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
 gi|308086743|gb|EFO36438.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus Peru-466]
          Length = 525

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 98/285 (34%), Gaps = 36/285 (12%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +    F V  +      +  L AL++ +    ++ P L   + + 
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIG 342
           A    G +  Y    SS+GATSVT     + L  TP +    R+ L +      P  V+ 
Sbjct: 422 AYIEQGTEIPYLES-SSSGATSVTFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGKVVK 480

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
              G+  +   ++  T V + +G T+VL G+ +  I    + +PL
Sbjct: 481 TGTGEAMAIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPL 525


>gi|167615514|ref|ZP_02384149.1| type II/III secretion system protein [Burkholderia thailandensis
           Bt4]
          Length = 309

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 49/225 (21%), Positives = 90/225 (40%), Gaps = 11/225 (4%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGG---KFVSEGGDFSVKGVLDRFS--FETV 259
           V       +  Q+S    +  P+    +  G       +     S+  VL          
Sbjct: 88  VDLQTGTGLTSQNSYANGTLNPTFGSISLAGNDSVGVPASPLGLSLTAVLGDAGRYLLAR 147

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           + ALE +   RT A P +T +    A   +  Q   +    ++    + +   GV L   
Sbjct: 148 IDALESSNQARTDASPKVTTLDNVEAVMDNKKQFFVRVAGYTSAD--LYSISTGVSLRVL 205

Query: 320 PTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P V+  G   +I L ++  V   +      ++P     + +T   +  G  +++AG   D
Sbjct: 206 PMVVEEGGRTQIKLDVRI-VDGELSQQRVDNIPVIVSNEINTQAFIEQGQALLIAGYKVD 264

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
                + G+P+LSK+P+LGALFR++      +E     TP +++P
Sbjct: 265 ARSSTQSGVPVLSKLPLLGALFRSTDKQDSHSERLFLVTPRVIEP 309


>gi|172036496|ref|YP_001802997.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
 gi|171697950|gb|ACB50931.1| general secretion pathway protein D [Cyanothece sp. ATCC 51142]
          Length = 778

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 79/221 (35%), Gaps = 15/221 (6%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +   +    +           ++               F   +    ++   + L 
Sbjct: 527 GEPDTFERTFDPETGIVTTTVTPGSIATATGALPSFFQFPRRFLAQIETNIQSGNAKILT 586

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327
           +PTL    GQ A+     + +    +     + V T      D G+ L      +   G 
Sbjct: 587 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 646

Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
           I L +   ++        +        ++     R+  +  + L  G T++L+G++ +  
Sbjct: 647 INLTVSPTIAAVGDVQQFDSGSDGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 706

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           Q     +PLL  IP+LGALFR+     + TE+ +  TP ++
Sbjct: 707 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 747


>gi|120555550|ref|YP_959901.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
 gi|120325399|gb|ABM19714.1| type II and III secretion system protein [Marinobacter aquaeolei
           VT8]
          Length = 733

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 116/335 (34%), Gaps = 32/335 (9%)

Query: 115 LIERDIAHLEMTLRRFIA-DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGR 173
           +       L   L +    +               G              + + +S S  
Sbjct: 371 VQNTSAEELASLLSQLYGGNELAGSRSARSGESNTGTSNASDQETSTTRRAGSTVSVSTE 430

Query: 174 NQYANSSSKKVMNLLNIAGE---------------DQ---VTLKVTIAEVRRDILKQIGF 215
                    K  N+L   G                 Q   V ++V +AEV  +  + +G 
Sbjct: 431 VAGGRLVVDKNRNVLIFRGSGADWLKLREIAVELDKQVPSVLMEVVLAEVTLNDNQGMGV 490

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +     S    S +     G      G  +++           VL+A   +      + P
Sbjct: 491 EWLARNSVGDLSGTLETLGGLGIGGRGFSYTLN---SAGQTRAVLNAFYDSNQAVIRSSP 547

Query: 276 TLTAISGQSASFTSGGQHL---------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
            +   SG++A+   G +            +T   +           GV L   P V + G
Sbjct: 548 KIMVKSGETATIEVGNEIPVLTSTRQSDTQTDGDTDVLQQFQYRKTGVDLTVEPIVQASG 607

Query: 327 RIGLRIQTEVSEPVIGVNAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
            + +RI+  +SE          +P+   R  +T++ L  GG++VL GL+     Q ++G+
Sbjct: 608 LVDIRIRQSLSETQDTSGGDSFLPTILNRAVETSLTLRDGGSVVLGGLISKTNSQGEQGV 667

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           P L K+P+LG LFR    +   TE+ +   P++V+
Sbjct: 668 PWLGKLPLLGPLFRTDSDSTSTTELMVMVVPYVVR 702


>gi|317064333|ref|ZP_07928818.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
 gi|313690009|gb|EFS26844.1| general secretion pathway protein D [Fusobacterium ulcerans ATCC
           49185]
          Length = 451

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 58/303 (19%), Positives = 114/303 (37%), Gaps = 30/303 (9%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           + +     + +L     +  +S R   + +  +      + +  S+ +++  L+     Q
Sbjct: 116 VNISADEVSAILK---NSFGESIRVSSIPKMNIIIIVGKKDSTVSAVRLVKELD-KEIQQ 171

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGS-----SSGPSKSFAADFG--GKFVSEGGDFSVK 248
           V +   I +V  ++ + +GF    + S     + G   S        G  VS G   ++ 
Sbjct: 172 VRITSQILDVTDNLFENLGFDWLYSNSGSIEKNKGLDISLIGKAAVEGAGVSFGSGINLI 231

Query: 249 GVLDRFS--FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              +  +      ++ L+    +   A P++    G+   F    + +          T 
Sbjct: 232 RQFNDGNDILGLGINLLQATQDLVISAMPSILVADGEEGEFKITEEVIVGEEKKENDNTE 291

Query: 307 VT-----THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------------VIGVNAGDMP 349
            T       + G++L   P +   G I L++  EVS                G    +  
Sbjct: 292 KTTYTPLFREAGIILKVKPLIKENGIIFLKVMIEVSNFRLKKSEQENISSDGGTYNSEGG 351

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           S   R  +TTV++  G TI + GL +  +Q L   IP L  +P++   F+N    RE T+
Sbjct: 352 SKIGRSIETTVKMKDGETIFIGGLKRAVVQNLDSRIPFLGTLPVINIFFKNQSVKREITD 411

Query: 410 IFI 412
           I+I
Sbjct: 412 IYI 414


>gi|323530312|ref|YP_004232464.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
 gi|323387314|gb|ADX59404.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1001]
          Length = 610

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
             + LKQIG       S               +                         GG
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPVGG 432

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +             ++AL+++   +  A P +  ++   A      +   +    ++ 
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492

Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
              + +   GV L   P  V   GR  +++   + +  I      ++P       +T   
Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G ++++AG   D     + G+P LSKIP++GALFR     R   E     +P ++
Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608


>gi|254253701|ref|ZP_04947018.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
 gi|124898346|gb|EAY70189.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
          Length = 620

 Score =  123 bits (308), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
             D L Q+G   +   S                               +        G  
Sbjct: 384 DDDALHQLGVDWTAHNSHIDVQTGTGTLAQSTYNGTLSQNFGQTALPGNVLAAATPVGAS 443

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +             + AL++  A +  A P +  ++   A   +  Q        ++G 
Sbjct: 444 VAAVLGDAGRYLMARISALQQTKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 503

Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
             + +   G+ L   P V+   GR  +++   + +  +      ++P  +    +T   +
Sbjct: 504 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDQTVSNLPVIQNSTINTQAFI 561

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G  +++AG   D       G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 562 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDNRQKSHMERLFLLSPRVISP 620


>gi|172064938|ref|YP_001815650.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria MC40-6]
 gi|171997180|gb|ACB68097.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria MC40-6]
          Length = 589

 Score =  123 bits (308), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
             D L+Q+G   +   S                               +        G  
Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 412

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +             + AL+   A +  A P +  ++   A   +  Q        ++G 
Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472

Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
             + +   G+ L   P V+   GR  +++   + +  +      ++P  +    +T   +
Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G  +++AG   D       G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 531 EEGQALLIAGYRADTATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|307725648|ref|YP_003908861.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
 gi|307586173|gb|ADN59570.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia sp. CCGE1003]
          Length = 610

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 42/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
             + LKQIG       S               +                         GG
Sbjct: 373 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLADGTTVINTTPVGG 432

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +             ++AL+++   +  A P +  ++   A      +   +    ++ 
Sbjct: 433 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 492

Query: 304 ATSVTTHDYGVVLHFTP-TVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
              + +   GV L   P  V   GR  +++   + +  I      ++P       +T   
Sbjct: 493 D--LYSVSTGVSLRVLPLVVEENGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 550

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G ++++AG   D     + G+P LSKIP++GALFR     R   E     +P ++
Sbjct: 551 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGALFRYRDDQRSHMERLFLLSPRII 608


>gi|159028225|emb|CAO88035.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 518

 Score =  122 bits (307), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 44/205 (21%), Positives = 78/205 (38%), Gaps = 19/205 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308
           F   L A  +    + L +P+L    GQ A          S    +    + +   T+  
Sbjct: 306 FLMTLQASIQTGNAKILTDPSLVVQEGQQAVVKLTEKVLVSVETTIDTNSNGNVRTTTPV 365

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDM--------PSYRVRKADTT 359
             D G+ L      +   G I L +   +++P   +             P          
Sbjct: 366 FGDAGLTLTVDVNQIDDNGYISLNVAPTIAQPGPQIPFNSGGATINQLTPLITRELLSGL 425

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G +++L+G++++  Q  +  +P+L  IPILGALFR+       +E+ I  TP ++
Sbjct: 426 IRLRDGQSLILSGIIQERQQSSETKVPILGDIPILGALFRSRTNQNSRSEVIILLTPKII 485

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFF 444
           +  A   L     +Y    DA    
Sbjct: 486 EDSATSTLGI---NYQPGQDAAEVL 507


>gi|45751673|emb|CAF21320.1| InvG protein [Burkholderia thailandensis]
          Length = 270

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/280 (18%), Positives = 104/280 (37%), Gaps = 22/280 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 5   GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 63

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 64  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTKFLASVAALSQTGD 112

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GR 327
              ++ P +       A+F S      K +   T    +    YG +++  P +     +
Sbjct: 113 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDASQ 170

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           + + +  E        S+  I ++   MP     + +T   +P   ++++ G  +DD+ +
Sbjct: 171 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTVARVPHEMSLLIGGNTRDDVTR 230

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               IP L+ +P++G LFR      E+        P L++
Sbjct: 231 RTFRIPGLASLPLIGGLFRGHSDRHEQVVRVFLIQPKLLR 270


>gi|170698370|ref|ZP_02889444.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
 gi|170136709|gb|EDT04963.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria IOP40-10]
          Length = 589

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
             D L+Q+G   +   S                               +        G  
Sbjct: 353 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQSTYNGTLSQNFGQTALAGNVLAAATPVGAS 412

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +             + AL+   A +  A P +  ++   A   +  Q        ++G 
Sbjct: 413 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 472

Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
             + +   G+ L   P V+   GR  +++   + +  +      ++P  +    +T   +
Sbjct: 473 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 530

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G  +++AG   D       G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 531 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 589


>gi|115360614|ref|YP_777751.1| YscC/HrcC family type III secretion outer membrane protein
           [Burkholderia ambifaria AMMD]
 gi|115285942|gb|ABI91417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia ambifaria AMMD]
          Length = 561

 Score =  122 bits (307), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 80/239 (33%), Gaps = 25/239 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAA---------------------DFGGKFVSEGGD 244
             D L+Q+G   +   S                               +        G  
Sbjct: 325 DDDALRQLGVDWTAHNSHIDVQTGTGTLGQNTYNGTLSQNFGQTALAGNVLAAATPVGAS 384

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
            +             + AL+   A +  A P +  ++   A   +  Q        ++G 
Sbjct: 385 VAAVLGDAGRYLMARISALQETKAAKIDASPKVVTLNNIEAVMDNQTQFFVPVSGYTSGD 444

Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGV-NAGDMPSYRVRKADTTVEL 362
             + +   G+ L   P V+   GR  +++   + +  +      ++P  +    +T   +
Sbjct: 445 --LYSVSTGISLRVLPMVVEEDGRTRIKLDVAIQDGQLTDRTVSNLPVIQNSTINTQAFI 502

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             G  +++AG   D       G+P LSKIP++GALFR     +   E     +P ++ P
Sbjct: 503 EEGQALLIAGYRADSATMGVTGVPGLSKIPLIGALFRTDSRQKSHMERLFLLSPRVISP 561


>gi|323186572|gb|EFZ71915.1| hypothetical protein ECOK1357_0057 [Escherichia coli 1357]
          Length = 367

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 55/325 (16%), Positives = 104/325 (32%), Gaps = 22/325 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 10  GVATVVERLLNNGKALSNRQAKNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 69

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L++A    + L + I ++ +  L  +G        
Sbjct: 70  YPETNSILVKGNDQQIQIIRDIITQLDVAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 124

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 125 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 179

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE------- 335
             A F +        V      +S+    YG +++  P   S G+I + +  E       
Sbjct: 180 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSSRGQIEMSLTIEDGTGNSQ 237

Query: 336 VSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
            +      N   +P     K  T   +P G ++++ G   +        IP LS IP++G
Sbjct: 238 SNYNYNNENTSVLPEVGRTKISTIARVPQGKSLLIGGYTHETNSNEIVSIPFLSSIPVIG 297

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
            +F+    N           P  +K
Sbjct: 298 NVFKYKTSNISNIVRVFLIQPREIK 322


>gi|307149984|ref|YP_003885368.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
 gi|306980212|gb|ADN12093.1| type II and III secretion system protein [Cyanothece sp. PCC 7822]
          Length = 728

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/225 (18%), Positives = 83/225 (36%), Gaps = 19/225 (8%)

Query: 215 FQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF-----SFETVLHALERATAI 269
             ++     +  +          + +  G  +    L         F   L A   +   
Sbjct: 473 IPYARPSFGTFNNPFQPGVSAATYDAATGQRTFTYQLPNLFQFPQKFLATLQASITSGNA 532

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVL 323
           + L +PTL    GQ A+     + +    +     + V T      D G+ L      + 
Sbjct: 533 KILTDPTLVVQEGQQATVKLTQKVVESVNTQVDPLSGVRTTTPVLQDAGLTLTVEVDRID 592

Query: 324 SPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTT--VELPSGGTIVLAGLLK 375
             G + L +   +           G  + +  +   R+  T+  + +  G T++L+G++ 
Sbjct: 593 DNGFVSLFVSPTIAAPGATQTFDSGNGSNNTLTLLSRREMTSGLIRMRDGQTLILSGIIS 652

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           +  +     +P+L  IPILGALFR +  N   +E+ +  TP ++ 
Sbjct: 653 ETERTTVTKVPILGDIPILGALFRRTDNNGNRSEVIVLLTPKIID 697


>gi|292488059|ref|YP_003530936.1| type III secretory protein InvG [Erwinia amylovora CFBP1430]
 gi|292899270|ref|YP_003538639.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291199118|emb|CBJ46232.1| type III secretion system protein [Erwinia amylovora ATCC 49946]
 gi|291553483|emb|CBA20528.1| Type III secretory protein InvG [Erwinia amylovora CFBP1430]
          Length = 588

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 105/292 (35%), Gaps = 25/292 (8%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
           +  +    V+     + + S  +V +     + S            V +L+      + Q
Sbjct: 273 INDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 332

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + L + I ++ ++ + ++G Q S +   S     F         S              +
Sbjct: 333 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 379

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + AL ++ + + ++ P +       A F +      + V      +S+    YG +
Sbjct: 380 FLANVSALVKSGSAQVISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 437

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPSGGTI 368
           +   P  L+  +  + +  ++ +     +A         +P     +  T   +P G ++
Sbjct: 438 ISVLPR-LAERQHEIEMILDIHDGTAPRDASGDSAHIDSLPVISNTQISTEARVPLGYSL 496

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++ G  ++  +    GIPLL  IP LG LF  S  ++ +        P L+ 
Sbjct: 497 LVGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 548


>gi|171915159|ref|ZP_02930629.1| putative outer membrane protein (ComQ) [Verrucomicrobium spinosum
           DSM 4136]
          Length = 809

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 115/332 (34%), Gaps = 92/332 (27%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS------------ITGSSSGPSKS 229
            + ++    A   QV ++V + E+    LK++GF                 G +     +
Sbjct: 463 DEYVDQAVNATPKQVEIQVRMIEINETRLKELGFDWLLGQFNVPGSDRVFAGGAGTADPN 522

Query: 230 FAADFGGKFVSEG------------------------------GDFSVKGVLDRFSFETV 259
             A F G+ V+ G                              G F+V GV     F+ V
Sbjct: 523 DPAPFPGQSVTSGLRSSGAILGVPSIDGLIGRATVPSANSKSPGFFAVSGVFTDPQFQVV 582

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------------------ 301
           L  L+++  +  LA PT+   SGQ A+ T   +  Y T                      
Sbjct: 583 LRGLKQSKGVDILAAPTVITKSGQRANVTVAKEFRYPTEFDPPQIPQNLSANVNGVQYVA 642

Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE--------------VSEP 339
                  +  T+    D G+ L   P V S  R + L +                  +  
Sbjct: 643 NFAPITPSTPTAFEKRDVGITLEVEPVVGSGNRTVDLNLVPSSVEFEGFIDYGTDIQNSA 702

Query: 340 VIGVNAGDM----------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
            +G+   D+          P +R  K  T+V +  G T+VL G+  +   ++ + +P++ 
Sbjct: 703 PVGIGGADVFFNVPNDILQPIFRTNKITTSVSVWDGNTVVLGGVTFEKRHKIDDKVPVVG 762

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLVKP 421
            +P++G  F++   N E   +    T  ++ P
Sbjct: 763 DLPLVGRAFQSKVSNVERKNVLFFVTVRVIDP 794


>gi|298489848|ref|YP_003720025.1| type II and III secretion system protein ['Nostoc azollae' 0708]
 gi|298231766|gb|ADI62902.1| type II and III secretion system protein ['Nostoc azollae' 0708]
          Length = 818

 Score =  122 bits (306), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 86/251 (34%), Gaps = 12/251 (4%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF----ETVL 260
           +       +    +    S+    +  AD            +   +   + F       L
Sbjct: 564 ISSASSNPLQPGFTSITQSTNNIITINADGTTSVTQGTAGTATASLPSLYKFPKRFLASL 623

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-T 319
            A  +    + L +PTL    GQ A      +       + T    +   + G+ L    
Sbjct: 624 QAQVQTGNAKILTDPTLIVQEGQDAVVKLTSEVYGGIRITDTLREPI-IKEAGLTLAVKV 682

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA--GDMPSYRVRKADT-TVELPSGGTIVLAGLLKD 376
             +   G + L +   VS      +   G++     R   +  + L  G T++L+G+++D
Sbjct: 683 ERIDDNGFVSLSVAPTVSAFANSASTPDGNIALLAARSLQSGILRLRDGQTLILSGIIQD 742

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSV 436
             +     +P+L  IP+LG+LFR +    E  E+ +  TP ++             +Y+ 
Sbjct: 743 QDRTTISKLPILGDIPLLGSLFRKTNRQNERREVIVLLTPQVMDDSERSAYGY---NYNP 799

Query: 437 EDDAKAFFFNR 447
               +     R
Sbjct: 800 SSQVRQILERR 810


>gi|91070466|gb|ABE11376.1| putative general (type II) secretion pathway protein D precursor
           [uncultured Prochlorococcus marinus clone HOT0M-10G7]
          Length = 640

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 94/280 (33%), Gaps = 41/280 (14%)

Query: 181 SKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQ-------IGFQHSITGSSSGPSKSFAAD 233
           ++  +  L++  + QV L V I +V              +     I  +S     +    
Sbjct: 360 AETFIKSLDVRHK-QVALTVKIIDVSLTKSDIKENVFELLTGDTRIISNSGLGILTSNLG 418

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT--------------- 278
                 S     ++ G + +  F   L A       + LA PTL                
Sbjct: 419 AINPGDSARVSNALTGGVGQGGFMNWLEAKIDNNNAKILASPTLILGEDGNALSSGAAAV 478

Query: 279 ------AISGQSASFT-------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFT-PTVLS 324
                 A  G+            +      ++ +      +      G+        +  
Sbjct: 479 DDTLSQATIGRPYKNEGFIKVGETVITSFEQSSNEGVTTCTAQEGTAGITFGAKLEKIDD 538

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDDIQQ 380
            G +   +   +S     V             RK DT ++ + +G T++L G+L+D    
Sbjct: 539 NGYVTFALSPAISSVTSTVEIAGCGIQNTLSVRKLDTGSIRVQNGETLILTGVLQDSDTV 598

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +P+L  IPI G++FR+S   +++ E+ I  TP ++K
Sbjct: 599 TTSKVPILGDIPIFGSIFRSSATQKKKNELIILVTPKILK 638


>gi|170690596|ref|ZP_02881763.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
 gi|170145031|gb|EDT13192.1| type III secretion outer membrane pore, YscC/HrcC family
           [Burkholderia graminis C4D1M]
          Length = 609

 Score =  122 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 80/238 (33%), Gaps = 26/238 (10%)

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE----------------------GG 243
             + LKQIG       S               +                         GG
Sbjct: 372 DDNALKQIGVDWRAHNSHIDIQTGNGTTQQNGYNGNIDPIFGTQTLSDGTTVINTTPLGG 431

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             +             ++AL+++   +  A P +  ++   A      +   +    ++ 
Sbjct: 432 SLTAVLGNAGRYLLARVNALQQSNLAKIDASPKVATLNNVEAVMDQKTRFFVRVSGYTSA 491

Query: 304 ATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVE 361
              + +   GV L   P V+   GR  +++   + +  I      ++P       +T   
Sbjct: 492 D--LYSVSTGVSLRVLPLVVEESGRTDIKLNVHIEDGAITSQQVDNIPVITTSTINTESF 549

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +  G ++++AG   D     + G+P LSKIP++G LFR     R   E     +P ++
Sbjct: 550 VGQGESLLIAGYRVDTSTNGETGVPGLSKIPLIGGLFRYRDDQRSHMERLFLLSPRII 607


>gi|110639568|ref|YP_679778.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110282249|gb|ABG60435.1| type II general secretion pathway (GSP) D protein [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 656

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 96/246 (39%), Gaps = 21/246 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG----------GKFVSEGG 243
             V ++V I EV ++ + + G +  +  S +    S     G            F++  G
Sbjct: 411 PMVMIEVIIMEVLKNRMVKTGIKAGLNDSLATTQTSGTFLPGLDVKLSTSTINDFINGLG 470

Query: 244 DFSVKGVLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
             S+  +     SF   L ALE    +   + P L+ ++G  A+ + G    Y+  + +T
Sbjct: 471 IGSITNLGSVTPSFYMTLSALETNNNVEIKSMPKLSTLNGHDANMSIGQTVYYEVQTQNT 530

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                          +      L   P V    ++ L I+   +      NA   P+   
Sbjct: 531 LGSLTTNTITTVQYQSVQANQTLSIKPLVSGDDQVTLTIEVNQTSFAKS-NAAGPPNTTT 589

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  + + + +   IVL GL K       EG P+LS+IP++  LF +   ++ ++ + + 
Sbjct: 590 SQFKSIIRVRNEEMIVLGGLEKISKSIDTEGTPILSRIPVIKLLFSSKTKSKSKSILVLF 649

Query: 414 ATPFLV 419
             P ++
Sbjct: 650 IKPIII 655


>gi|285018275|ref|YP_003375986.1| xanthomonas secretion apparatus protein [Xanthomonas albilineans
           GPE PC73]
 gi|283473493|emb|CBA15996.1| probable xanthomonas secretion apparatus protein [Xanthomonas
           albilineans]
          Length = 626

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 59/377 (15%), Positives = 124/377 (32%), Gaps = 44/377 (11%)

Query: 52  IGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLN 111
           + L+   ++     ++D +V  P  ADV+      ++      G ++    G   +   +
Sbjct: 227 VPLHNTFVVNRRYKIRDEMVKVPGVADVI----HELF------GSSS----GAHPQSTPS 272

Query: 112 LDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQS 171
              +++         L   +  S       +    L G  R +     AV       +  
Sbjct: 273 GSSVLDMQQDVPADVLNLPLPKS-----SDAKAEDLSGRDRMVAMKGEAVWDVRMVPNPD 327

Query: 172 G------RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
                           ++ ++ +++A + Q+ L + I +V R  L  +G     +     
Sbjct: 328 DNSILLYGPSAHVELMERAIHAVDVA-KRQIELSLWIIDVDRQKLNALGIDWQSSARYGS 386

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            + S  +                  L+   F   + AL +      ++ P +       A
Sbjct: 387 FTMSANSPQMAS-------------LNGIKFLATVSALSKRGLANIVSRPIVLTEENVPA 433

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIG 342
            F +     Y+ V     A S+    YG ++   P +   G + + +     +       
Sbjct: 434 IFDNSHTQYYQLV--GERAVSLEHFTYGTMVSVLPRLTQDGEVEMIVTVRDGQSQNSSTA 491

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            N   +P     +  T   +P   +++L G   D  +     IP LSK+P++G LFR  +
Sbjct: 492 KNTTVIPEVSDTQISTVARVPKFKSLLLGGSTIDRHENDTSYIPGLSKLPVVGRLFRLDK 551

Query: 403 FNREETEIFIAATPFLV 419
              E         P ++
Sbjct: 552 TITEHMVRLFLIQPRVL 568


>gi|226227920|ref|YP_002762026.1| hypothetical protein GAU_2514 [Gemmatimonas aurantiaca T-27]
 gi|226091111|dbj|BAH39556.1| hypothetical protein [Gemmatimonas aurantiaca T-27]
          Length = 735

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 107/307 (34%), Gaps = 73/307 (23%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS-------------------- 224
           +  L++    QV +K  I  V R  ++ IG  + +   +                     
Sbjct: 423 LQQLDVRTP-QVAIKAKIIFVNRTGIQDIGLAYDLGTGNKQFFQQLVPRTDPNTLTPVDT 481

Query: 225 ------------------------GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
                                   G + +  A+          +      L R+     L
Sbjct: 482 DGDGVPDAMGGGSPYQGPARINLGGNAIAGIANANNAIKPNALNLIYSTALGRYQLTAFL 541

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------------ 302
           +AL+ ++     +EP++T ++ +SA    G +   + + +S                   
Sbjct: 542 NALQTSSLADVQSEPSITILNNRSAEIFVGQEIPIRVIDASAGGQGGGGGGGGGGGGGAA 601

Query: 303 ---------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
                       +V+  + G+ L  TP + +   + L I+ E S   I      +  +  
Sbjct: 602 GQPNAAAFFPRATVSKEEAGIKLSVTPQITNNKMVMLNIKAENSSAEIASTDVGV-IFNR 660

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           ++A++ V +  G   V+ GL   +  + + GIP+L  +P +G +F  +  N  + ++ I 
Sbjct: 661 QRAESQVLVADGEAAVIGGLTVTETTRFRSGIPVLMNLPFVGRIFSQNTKNETKRDLLIL 720

Query: 414 ATPFLVK 420
            TP ++ 
Sbjct: 721 VTPHILD 727


>gi|312172187|emb|CBX80444.1| Type III secretory protein InvG [Erwinia amylovora ATCC BAA-2158]
          Length = 517

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/291 (16%), Positives = 101/291 (34%), Gaps = 23/291 (7%)

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA--GEDQ 195
           +  +    V+     + + S  +V +     + S            V +L+      + Q
Sbjct: 202 ITDLPGEEVVADNSESARVSSDSVNIVAYSDTNSLLVMGTERQVSFVEDLIRAIDIAKRQ 261

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + L + I ++ ++ + ++G Q S +   S     F         S              +
Sbjct: 262 IQLSLWIIDISKEDINELGVQWSGSTKISSTGVIFGTSSLTPESS-------------IN 308

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   + AL ++ + + ++ P +       A F +      + V      +S+    YG +
Sbjct: 309 FLANVSALVKSGSAQIISRPEILTQENVPALFDNNSSFYARLVGERN--SSLEKITYGTM 366

Query: 316 LHFTPTVLS-PGRIGLRIQTEVSEPVIGVNAGD-----MPSYRVRKADTTVELPSGGTIV 369
           +   P +      I + +           + G      +P     +  T   +P G +++
Sbjct: 367 ISVLPRLAERQHEIEMILDIHDGTAPRDASGGSAHIDSLPVISNTQISTEARVPLGYSLL 426

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + G  ++  +    GIPLL  IP LG LF  S  ++ +        P L+ 
Sbjct: 427 VGGYSRNQDEYHDIGIPLLRDIPYLGKLFDYSYKSQTKMVRLFLIHPRLLD 477


>gi|254575124|gb|ACT68025.1| type III secretion apparatus [Pantoea stewartii subsp. stewartii
           DC283]
          Length = 602

 Score =  121 bits (303), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 56/358 (15%), Positives = 122/358 (34%), Gaps = 34/358 (9%)

Query: 67  QDVLVSDPTKADV--VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           +DV +S P  A V   + +  +    G++            G  +   +       A   
Sbjct: 227 RDVPISVPGVATVLNQLLNNTSCREGGRSA---------PAGAIITVDNDTRSALEAASA 277

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
                F    +      +    +   + + Q     V  S+T       ++   S  + +
Sbjct: 278 TQKGNFPPLPSFNAAPAARGRAVDRDIPSQQTIN-IVGYSDTNSLLIQGSERQVSFVEDL 336

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N ++I  + Q+ L + I ++ +D + ++G +            +F         S    
Sbjct: 337 VNAIDIP-KQQIQLSLWIIDISKDDINELGIRWQGAAKMGNTGVTFNTSSLTPESS---- 391

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                      F   + AL +  + + ++ P +       A F +      K +   T  
Sbjct: 392 ---------LHFLADVSALAKKGSAQVVSRPEILTQENVPALFDNNSSFYAKLIGERT-- 440

Query: 305 TSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADT 358
           +S+    YG ++   P +      I + +  +     ++      N   +P     +  T
Sbjct: 441 SSLEKITYGTMISVLPRLAQRQQEIEMILNIQDGGLLLNADGSTENIDSLPMVNNTQIST 500

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              +P G ++++ G  +D  +  + GIPLL  IP +G LF  S  + ++        P
Sbjct: 501 EARVPVGYSLLVGGYSRDQDEHHRLGIPLLRDIPFVGKLFDYSYTSHKKMVRLFLIQP 558


>gi|326423830|ref|NP_760303.2| type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
 gi|319999200|gb|AAO09830.2| Type IV pilus biogenesis protein PilQ [Vibrio vulnificus CMCP6]
          Length = 594

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +        +  ER    L       I  +  +   +++ +     V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
             + +         T               ++++N L+I  + QV ++  I  V    L 
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341

Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
           ++G +   T  +   +   +                                        
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401

Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     +    F V  +      +  L AL+R +    ++ P L   + + A    
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
           G +  Y    SS+GAT+V+     + L  TP +    R+ L +      P   +    G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S  N  +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 581 RELLIFVTPKVI 592


>gi|37681174|ref|NP_935783.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
 gi|37199925|dbj|BAC95754.1| type IV pilus (Tfp) assembly protein PilQ [Vibrio vulnificus YJ016]
          Length = 594

 Score =  121 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +        +  ER    L       I  +  +   +++ +     V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
             + +         T               ++++N L+I  + QV ++  I  V    L 
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341

Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
           ++G +   T  +   +   +                                        
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGGEGGSASIDDFL 401

Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     +    F V  +      +  L AL+R +    ++ P L   + + A    
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
           G +  Y    SS+GAT+V+     + L  TP +    R+ L +      P   +    G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S  N  +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 581 RELLIFVTPKVI 592


>gi|332535460|ref|ZP_08411243.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
 gi|332035105|gb|EGI71619.1| type II/IV secretion system secretin RcpA/CpaC, associated with Flp
           pilus assembly [Pseudoalteromonas haloplanktis ANT/505]
          Length = 639

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 59/278 (21%), Positives = 109/278 (39%), Gaps = 35/278 (12%)

Query: 178 NSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ--------------HSITGSS 223
           + +  KV++ + +    QV + V + EV +  LKQ                      G +
Sbjct: 335 SVAGGKVLSSIEVEDLPQVRVSVQLYEVNQRRLKQWRPDISVLSNGYEKEAGLFGRDGMT 394

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
              S S   +   + +      +++    +F+ + +   LE+    RTL+ PT+T ++G+
Sbjct: 395 ERESGSATIENALQLIGGQLTNNLQLSTSQFAIDMLFSLLEQEGISRTLSRPTITVLAGE 454

Query: 284 SASFTSGGQHLYKTVSSSTGATS------------VTTHDYGVVLHFTPTVLSPGRIGLR 331
           SA F  GG+    T  S +G TS                 +GV L+    V    RI L 
Sbjct: 455 SAVFKVGGEVPVPTSYSPSGITSGQQGSSGSVFSGTEFKSFGVELNVRAMVDDKDRITLD 514

Query: 332 IQTEVSEPVIG---------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           +   +S P             ++ +  ++  R   T+  L  G  +++ GL+  D     
Sbjct: 515 LNPVISLPDTTLTAEIAQSTGSSLNSSAFNTRSMQTSTRLKDGQPLIIGGLISTDNNASH 574

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           + +P  +   +LG L   +  +    E+ I  TP LV+
Sbjct: 575 DFVPDGNGNSMLGKLSETTSKSENNRELIIVVTPNLVR 612



 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/133 (18%), Positives = 48/133 (36%), Gaps = 1/133 (0%)

Query: 62  VPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIA 121
              D+  + +   T  DV V + R + +  K +G+ ++++   D        + +  D +
Sbjct: 49  FTRDISRIALGHETTLDVNVVNGRELLILAKKLGRTSMMVWYDDKSS-ETFLLGVTEDYS 107

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
            LE  L     D  + +      VVL G V TI     A E ++ +L  S         +
Sbjct: 108 VLENALNDIHPDVQLTIAPDRHAVVLRGEVPTINYRHAAYEAAKNYLYASSSQASQPVIT 167

Query: 182 KKVMNLLNIAGED 194
                 +  +   
Sbjct: 168 SNPNQGMFNSLAQ 180


>gi|195952904|ref|YP_002121194.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932516|gb|ACG57216.1| type II and III secretion system protein [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 653

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/247 (20%), Positives = 96/247 (38%), Gaps = 24/247 (9%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG--------KFVSEGGDFSV 247
           + + V   E+ +D  KQ+G       +  G +    ++F           F         
Sbjct: 406 IQIDVKAVEISKDYQKQLGLGIGGAYAGRGITILNTSNFNPISPLANAFSFTPGSSPIVT 465

Query: 248 KGVLDRFS--------------FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
              ++  +                  + ALE     +++ + TL A++ Q  S T G ++
Sbjct: 466 ATPINAPNGLMSGIYSEGKFHVLGFEIQALESINKAKSVFKSTLLAMNDQPTSLTQGIEY 525

Query: 294 LYKTVSS-STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
            + T+S+      +VT  +    +  TP VL  G+I L I  + +  +  + A   P+  
Sbjct: 526 PFTTISTPGQAVPTVTLQNVLNSIKVTPQVLPNGKILLNINIQ-NMSLGPLAANGQPTIN 584

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
                 ++ L  G T+ + G+   +     +GIP L K+PI+G +      ++  T +FI
Sbjct: 585 QNSNSLSIVLSDGATLAIGGVGLKNESNGLQGIPGLDKVPIIGNVGMTKNESKNNTNLFI 644

Query: 413 AATPFLV 419
             T   V
Sbjct: 645 FITAKRV 651


>gi|320155169|ref|YP_004187548.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
 gi|319930481|gb|ADV85345.1| type IV pilus biogenesis protein PilQ [Vibrio vulnificus MO6-24/O]
          Length = 594

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 46/372 (12%)

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           +  G   +I    +        +  ER    L       I  +  +   +++ +     V
Sbjct: 223 RVEGNVVLIAPQDELDLREKQQLEKERLAEELGSLKSEIIKVNFAKASDIAEMINGKESV 282

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
             + +         T               ++++N L+I  + QV ++  I  V    L 
Sbjct: 283 SMLSERGSVAIDERTNSLLLRELPENIEVIREIINSLDIPVK-QVQIEARIVTVNEGNLD 341

Query: 212 QIGFQHSITGSSSGPSKSFA---------------------------------------- 231
           ++G +   T  +   +   +                                        
Sbjct: 342 ELGVRWGFTSINGSTTVGGSIENNLATIGLYNAGSGSGSGDSGSGGSGSEGGSASIDDFL 401

Query: 232 --ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                     +    F V  +      +  L AL+R +    ++ P L   + + A    
Sbjct: 402 NVNLAATSANASSIAFQVAKLGSDLLLDLELSALQRESKAEIISSPRLITTNKKPAYIEQ 461

Query: 290 GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGD 347
           G +  Y    SS+GAT+V+     + L  TP +    R+ L +      P   +    G+
Sbjct: 462 GTEIPYLES-SSSGATTVSFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGEIVKTGTGE 520

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S  N  +
Sbjct: 521 AVAIDTQRIGTQVLVNNGETVVLGGIFQHSITNTTDKVPLLGDLPLLGALFRRSYENVGK 580

Query: 408 TEIFIAATPFLV 419
            E+ I  TP ++
Sbjct: 581 RELLIFVTPKVI 592


>gi|126659012|ref|ZP_01730153.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
 gi|126619669|gb|EAZ90397.1| general secretion pathway protein D [Cyanothece sp. CCY0110]
          Length = 743

 Score =  121 bits (302), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 43/221 (19%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +   +      +     G    +E G  S         F   +    ++   + L 
Sbjct: 494 GEPDTFERTVEDGIITTTVTPGSIATAEAGLPSFFQF--PRRFLAQIETNIQSGNAKILT 551

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT-----HDYGVVLHF-TPTVLSPGR 327
           +PTL    GQ A+     + +    +     + V T      D G+ L      +   G 
Sbjct: 552 DPTLVVQEGQEATVKLTQKVIENITTQVDPLSGVRTTTPVLQDAGLTLAINVDKIDDNGY 611

Query: 328 IGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDI 378
           I L +   ++        +        ++     R+  +  + L  G T++L+G++ +  
Sbjct: 612 INLTVSPTIAAVGDVQAFDAGADGGTNNLFLLNRRELSSGLIRLRDGQTLILSGIISESD 671

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           Q     +PLL  IP+LGALFR+     + TE+ +  TP ++
Sbjct: 672 QSTTSKVPLLGDIPLLGALFRSQTDTSQRTEVIVLLTPQIL 712


>gi|22127359|ref|NP_670782.1| hypothetical protein y3485 [Yersinia pestis KIM 10]
 gi|108810715|ref|YP_646482.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229840586|ref|ZP_04460745.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|229842864|ref|ZP_04463016.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229900910|ref|ZP_04516034.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|270487710|ref|ZP_06204784.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294502758|ref|YP_003566820.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|21960443|gb|AAM87033.1|AE013951_8 hypothetical [Yersinia pestis KIM 10]
 gi|108774363|gb|ABG16882.1| outer membrane secretin family protein [Yersinia pestis Nepal516]
 gi|229682249|gb|EEO78341.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Nepal516]
 gi|229690131|gb|EEO82188.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           India 195]
 gi|229696952|gb|EEO86999.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Orientalis str.
           PEXU2]
 gi|262360790|gb|ACY57511.1| hypothetical protein YPD4_0602 [Yersinia pestis D106004]
 gi|262364735|gb|ACY61292.1| hypothetical protein YPD8_0602 [Yersinia pestis D182038]
 gi|270336214|gb|EFA46991.1| conserved hypothetical protein [Yersinia pestis KIM D27]
 gi|294353217|gb|ADE63558.1| hypothetical protein YPZ3_0648 [Yersinia pestis Z176003]
 gi|320016745|gb|ADW00317.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis biovar Medievalis str.
           Harbin 35]
          Length = 149

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/154 (32%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +    RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    
Sbjct: 1   MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++  + IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +    
Sbjct: 61  RESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             + FF    N           + + +    GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148


>gi|284052867|ref|ZP_06383077.1| type II and III secretion system protein [Arthrospira platensis
           str. Paraca]
          Length = 785

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%)

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D     +                F + L A   +   + L +PTL    G++AS     
Sbjct: 561 TDGSLTALGSTTAAVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620

Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343
           + L    ++ T                 G+ L      +   G + + I  EVS P   V
Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680

Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             G    +     R   +  + L  G T++++G+++D  +     IPLL  +PILG+LFR
Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
            S  + E  E+ +  TP ++      
Sbjct: 741 RSSTSSERAEVIVLVTPNILDDSDRS 766


>gi|108809091|ref|YP_653007.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
 gi|108781004|gb|ABG15062.1| putative outer membrane secretin family protein [Yersinia pestis
           Antiqua]
          Length = 149

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +    RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    
Sbjct: 1   MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           Q+  + IP +  IP+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +    
Sbjct: 61  QESLKKIPFIGDIPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             + FF    N           + + +    GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148


>gi|116620187|ref|YP_822343.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223349|gb|ABJ82058.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 872

 Score =  120 bits (301), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 67/323 (20%), Positives = 111/323 (34%), Gaps = 54/323 (16%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDIL 210
           VR+I D QR    +      +  +    + ++K+++ L+   + +V + + + E      
Sbjct: 289 VRSIADIQRFFPYNSQNAIIAKGSADQVALAEKILHDLD-KPKSEVVVDIIVMEASSVYT 347

Query: 211 KQIGFQHSITGSSSGPSKSFAADF------------------------------------ 234
           +Q+    +  G + G + +  +                                      
Sbjct: 348 RQLTAAIAAQGLNVGVNFTPRSGLQVVNNPTTTGGTTTSGTGTGTATGTGTGTGTGTGTG 407

Query: 235 GGKFVSEGGDFSVKGVLDRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                      S  G L    F        L  +      + L  P L A+    A+   
Sbjct: 408 TSSVSGSAIPLSNLGHLSSADFSTTIPAATLQLVLSDGNTKVLQSPQLRAVDNVKATLKI 467

Query: 290 GGQHLYKTVSSSTG----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           G +    T S   G           T  T  D GV +  TP V   G + + I  ++S  
Sbjct: 468 GDRQPTATGSFQPGIGGVGINPLVNTQFTYIDVGVNVELTPRVHDNGDVSMHIDLDISSV 527

Query: 340 VIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
              VN    D P    RK    + +  G   +LAGL K    + K GIP L+ +PI+G L
Sbjct: 528 TGHVNLGGIDQPIIGQRKVSHDIRMHEGSVQLLAGLTKWQDTKTKTGIPGLANVPIIGRL 587

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
           F     +RE  E+ IA  P +V+
Sbjct: 588 FSGESVDRERQELMIALIPHIVR 610


>gi|116620720|ref|YP_822876.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116223882|gb|ABJ82591.1| type II and III secretion system protein [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 527

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 118/328 (35%), Gaps = 44/328 (13%)

Query: 113 DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSG 172
           D    +D   +   +++  A   +  +  +++V+L   V  +  ++   E          
Sbjct: 217 DTTNPQDFNSVITAVQQAFAIEKVAFDTQNNSVILRDRVSKVIPARMMFE---------- 266

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
                            +    +V +++   EV  +     G   + T S      +F  
Sbjct: 267 ---------------ELMGPRAEVEIELRFLEVSLNDAVTYGVDLANTFSVIPLQNAFNF 311

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
               K ++    F +          + + A    ++ + L    + ++  Q A+   G +
Sbjct: 312 AQLAKSLTSSSLFGINI------LSSAIVATMSNSSGKLLLSSEVRSVDNQPATLHVGDR 365

Query: 293 HL------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV 340
           +                 ++ T   S T  D G+ L  TP V     + L I +E  + +
Sbjct: 366 YPVLTSGYYGPQSFTNGANAYTPPPSFTFEDLGLTLKITPAVHGTESVTLDIDSEF-KVL 424

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G +   +P    R   +  +L  G    +AGL+  D  +   GI  +S++P+LG L   
Sbjct: 425 AGGSVNGIPIISSRVLKSKADLRFGEWAAVAGLVDRDQARTIAGIAGVSRVPVLGQLTST 484

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDLS 428
              N++E+++ I   P L+ P   + LS
Sbjct: 485 HTRNKDESQVLILMRPRLLTPPPGQALS 512


>gi|116071978|ref|ZP_01469246.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
 gi|116065601|gb|EAU71359.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. BL107]
          Length = 744

 Score =  120 bits (300), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/201 (22%), Positives = 83/201 (41%), Gaps = 11/201 (5%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD-- 311
            SF + + A+  +++ +TLA+PTL    GQ A   +G   +    ++ T   S       
Sbjct: 545 NSFYSYVEAVIESSSAKTLAQPTLLVQEGQEAEVQTGTSVITSVSTTDTSNGSTQFEYSR 604

Query: 312 --YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPSG 365
              G+ L      +   G + L I  E+S  EP    N   + +   R   + ++ L   
Sbjct: 605 ENAGLSLKVKVSKIDDNGFVSLNIDPEISVPEPAGESNGVAIFNIVGRSLSSGSIRLRDR 664

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T++L G+++D  +++    P+L  +P++G LFR++   R + E+ I  TP +V      
Sbjct: 665 QTLILTGVIQDQDKEIARKWPILGDLPVIGQLFRSTDSQRSKNELVILVTPMIVDDEMGG 724

Query: 426 DLSRPDDHYSVEDDAKAFFFN 446
                   Y            
Sbjct: 725 SYGY---GYRPSTREARQLMG 742


>gi|237737584|ref|ZP_04568065.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
 gi|229419464|gb|EEO34511.1| general secretion pathway protein D [Fusobacterium mortiferum ATCC
           9817]
          Length = 551

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 98/250 (39%), Gaps = 24/250 (9%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQH--SITGSSSGPSKSFAADFGGKFVSEGGDFSVK--- 248
           +Q+ +   I +V  ++ + +GF      +G++ G +    +  G   +S  G        
Sbjct: 277 EQIRIDAQILDVTDNLFETLGFNWIYDNSGNTEGNNSWSMSLLGNSSISGIGSIYSSSIA 336

Query: 249 ----GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                          ++ LE    +   + P++  + G+  SF    + +          
Sbjct: 337 ISKQFNSGNDILNLGINLLESTQDLVVSSRPSILVLDGEEGSFKVAEEVIVGEQREEDED 396

Query: 305 TS-----VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------ 353
           T+         + G++L  TPT+   G + L++  E+S   + VN  +            
Sbjct: 397 TNKVITTPIFREAGIILKATPTIRKDGWVILKVLIEISNFKLKVNKDESEESGTYNSEGG 456

Query: 354 ----RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R  +TT+++ +G TI + GL K  +  L   IP    +P++   F+N   + E ++
Sbjct: 457 SKVGRSIETTIKIKNGETIFIGGLKKATVHNLDSKIPYFGTLPMINFFFKNQNISHEISD 516

Query: 410 IFIAATPFLV 419
           I++     +V
Sbjct: 517 IYVKMKVNIV 526


>gi|116074048|ref|ZP_01471310.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
 gi|116069353|gb|EAU75105.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9916]
          Length = 670

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 11/201 (5%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTT 309
            SF   L A  ++T+ +TLA PTL    G+SA   +G   +        ++ +     T 
Sbjct: 471 NSFYGYLEAAIQSTSAKTLASPTLLVQEGESAKVETGTSVITGVKATETANGSTQFENTR 530

Query: 310 HDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP--SYRVRKADT-TVELPSG 365
            + G+ L      +   G + L++   VS P        +P  +   R   +  V L   
Sbjct: 531 ENAGLTLGVDIEKIDDNGFVTLKVFPSVSIPQEAGFQEGVPIYNITGRSLSSGRVRLRDR 590

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            T+VL G++++   ++    P+L  +P+LG +FR +   RE+ E+ I  TP +V   A  
Sbjct: 591 QTLVLTGVIRESDIEVVRKWPILGDLPVLGQMFRKTESEREKQELVILVTPSIVDDEAGG 650

Query: 426 DLSRPDDHYSVEDDAKAFFFN 446
                   +            
Sbjct: 651 AYGY---GFRPSTKEARQLMG 668


>gi|33866866|ref|NP_898425.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
 gi|33639467|emb|CAE08851.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 8102]
          Length = 344

 Score =  119 bits (299), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 43/176 (24%), Positives = 87/176 (49%), Gaps = 8/176 (4%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD- 311
             SF + + A+ ++++ +TLA+PTL    G++A   +G   +    ++ T   S    + 
Sbjct: 143 DDSFYSYVEAMIQSSSAKTLAQPTLLVQEGETAMVETGQSVITGVSATETANGSTQFQNT 202

Query: 312 ---YGVVLHF-TPTVLSPGRIGLRIQTEVS--EPVIGVNAGDMPSYRVRKADT-TVELPS 364
               G+ +      +   G I L ++ E+S   P        + + + RK ++ ++ L  
Sbjct: 203 RENAGLTVDLSVSKIDDNGFISLELKPEISVPIPAGTQEGVGIFNIQARKLESGSIRLRD 262

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G +++L G++ D  +Q     P+L  +P++G LFR S  +RE+ E+ I  TP ++ 
Sbjct: 263 GQSLILTGVITDSDRQQVRKWPILGDMPLIGQLFRQSSSSREKNELVIIVTPTILD 318


>gi|62287139|sp|Q9ZHF3|PILQ_NEIME RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           Flags: Precursor
 gi|4027986|gb|AAC96097.1| secretin precursor [Neisseria meningitidis H44/76]
          Length = 766

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/231 (19%), Positives = 89/231 (38%), Gaps = 21/231 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      G
Sbjct: 511 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 569

Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           GD                           +    L A E  +  +TLA P +   + + A
Sbjct: 570 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKPKTLANPRVLTQNRKEA 629

Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
              SG +  +   S S G  +T+       + L  TP +   G+I + ++     P    
Sbjct: 630 KIESGYEIPFTVTSRSGGGSSTNTELKKAVLGLTVTPNITPDGQIIMTVKINKDSPRQCA 689

Query: 344 NAG-DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +    +     +  +T   + +GGT+++ G+ ++D       +PLL+  P+
Sbjct: 690 SGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLATSPL 740


>gi|309586|gb|AAA25456.1| outer membrane protein [Neisseria gonorrhoeae]
          Length = 711

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      G
Sbjct: 456 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 514

Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           GD                           +    L A E  +  +TLA P +   + + A
Sbjct: 515 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 574

Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
              SG +  +   + S G  +T+       + L  T  +   G+I + ++     P    
Sbjct: 575 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 634

Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +  + +     +  +T   + +GGT+++ G+ +++       +PLL+  P+
Sbjct: 635 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 685


>gi|297621836|ref|YP_003709973.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
 gi|297377137|gb|ADI38967.1| putative type III secretion protein SctC [Waddlia chondrophila WSU
            86-1044]
          Length = 1115

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 84/269 (31%), Gaps = 39/269 (14%)

Query: 191  AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
                QV +++ I E   +     G            + + A   G   +    +  + G 
Sbjct: 799  RPLRQVFIEMLILETTLEDSLDYGVAWGSHSGGGSTATAQAYIGGASPLVGALNRDLSGT 858

Query: 251  LDR---------------------------FSFETVLHALERATAIRTLAEPTLTAISGQ 283
                                           +   ++ A       + +  P +     +
Sbjct: 859  NTPDASNLITDVGYTLGIIGRRLTHNGTQFATLGALVTAQHNRQNSKVILNPKIITEDNK 918

Query: 284  SASFTSG-----GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
            +A    G       +       S   T+    D G  +  TP + +   + L I+ EVS 
Sbjct: 919  TAELFVGINTRFQTNSISNDEGSVITTNFEYRDVGTTIRVTPLIGNGDIVTLEIEEEVSR 978

Query: 339  PVIG-------VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                       +   + P+  + +  TTV +P    ++++GL++D+    +   P L  I
Sbjct: 979  VAPQAVQGGSDIQDPNAPTTSISRTSTTVHVPDRHFVIISGLIQDEKIHSRNQFPCLGGI 1038

Query: 392  PILGALFRNSRFNREETEIFIAATPFLVK 420
            PI+GA F     +  +    +   P ++ 
Sbjct: 1039 PIIGAAFSAKINDDVKRTQMLFIRPQIID 1067


>gi|281356803|ref|ZP_06243294.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316930|gb|EFB00953.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 850

 Score =  119 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/336 (15%), Positives = 101/336 (30%), Gaps = 86/336 (25%)

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI---------- 219
                        +++  L+   +  + +++   EV  + L+++GF  S+          
Sbjct: 495 SVKNTPENLRRLDELIRQLDAIEKPLIMVEIKGIEVSEEDLQELGFDWSMSAIGSVKTDA 554

Query: 220 ----TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------------------- 256
                           ++   + V EG       ++D ++F                   
Sbjct: 555 SGNMVSGWLFGQGGGQSNPATRTVREGITGVNTALIDGWNFFPSLFGNVHPFGSDVPLNI 614

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGATSVT-- 308
              ++AL R T   TLA P +   + + AS      + +             G  ++T  
Sbjct: 615 SLTINALSRNTRTETLAAPKVMTSNDRMASVRMVKSYQFPEDWDAYEIEDDDGNYTITAP 674

Query: 309 ------THDYGVVLHFTPTVLSPG-RIGLRIQTEVS-----------------------E 338
                   D G++   TP V +    I L +   V+                       +
Sbjct: 675 VPSFGDETDIGIIFDVTPKVNADNYTITLEVNPTVTNYIGRDEYNIQVKGILTEYVRATD 734

Query: 339 PVIGVNAGDM---------------PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           P  G   G                 P    R     V +  G TI+L G++        +
Sbjct: 735 PSTGAFTGGTTLKQTKTTDRFNVWKPIISRRNVKVNVNVYDGETIILGGMIDATTTTRTD 794

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             P+L  +P++G  F++   N     + +  T  LV
Sbjct: 795 KWPILGDLPLVGRFFQSQSENITRNNLLLFVTTRLV 830


>gi|187735593|ref|YP_001877705.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187425645|gb|ACD04924.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 907

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/388 (14%), Positives = 108/388 (27%), Gaps = 138/388 (35%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-------------------------------SI 219
               QV +     EV ++  +++GF                                   
Sbjct: 515 GESQQVRIMTKFVEVTQENTEELGFDWIVTPFSVSNDRSTFLGGGTNYGTGSTSDSFTQS 574

Query: 220 TGSSSGPSKSFAADFGGKFVSEG--------------------------------GDFSV 247
            G  +G   +  +D     V+ G                                G  S+
Sbjct: 575 PGGVTGWPVNSGSDTINGLVTGGNRTGDYAITKNSVDNLLNSTNRSEASQKNAAPGIMSL 634

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------ 301
            G+ D  SF+ ++  L +      L  P++TA SG++A      +  Y T          
Sbjct: 635 TGIYDEGSFQMLMRGLSQKKGSDVLTAPSVTAKSGETAKIEIIREFWYPTEYEPPELPNS 694

Query: 302 --------------------------------------TGATSVTTHDYGVVLHFTPTVL 323
                                                            GV L   PT+ 
Sbjct: 695 VGNSGYNNGYGYGNNGNIVDGLLGNQIQPQISSFPVTPATPGVFEMKPVGVTLEVVPTIG 754

Query: 324 SPGRIG-LRIQTEVSEP------------------------VIGVNAGDMPSYRVRKADT 358
               I  L  +  + E                          +  N  + P +  R  +T
Sbjct: 755 DNKYIIDLNFKPSIVEFEGFVNYGSPIQSTGVGSDGKPMSLTLTENRIEQPIFSKRSVET 814

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           ++ +  G T+ + GL+ +++Q +++ +P+   +P++G  FR++  N  +  + I  T  +
Sbjct: 815 SLFIYDGHTVAIGGLITENVQTVEDKVPIFGDLPLIGRFFRSNSDNHIKKNLMIFVTGQI 874

Query: 419 VK----PVAMRDLSRPD--DHYSVEDDA 440
           +     PV    L      +      + 
Sbjct: 875 IDATGQPVRGNALPTAAAPESALPASEG 902


>gi|303252187|ref|ZP_07338355.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302648970|gb|EFL79158.1| Flp pilus assembly protein, secretin [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 190

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/168 (28%), Positives = 80/168 (47%), Gaps = 5/168 (2%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
           +SG++A    GG+  +       G  SV   ++G+ L     V    RI L +   VS  
Sbjct: 2   LSGETADILVGGEVPFVQ-RDKDGELSVLYKEFGIKLAVGAKVQKSDRIRLVLSQSVSTI 60

Query: 340 VIGVNAGD--MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                  +  +P +  R++ +T E+ +G + +++GLL     +  + +P+L  IPILGA 
Sbjct: 61  AGNYEIVNSRIPIFNTRRSKSTFEVGNGESFIISGLLNKQDIEGIKKVPVLGDIPILGAF 120

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFF 445
           FRN+  +RE  E+ + AT  LVKPV    +  P   +      + FF 
Sbjct: 121 FRNASSSRESKELVVVATVNLVKPVDGSQVLYPT--FENTGTMERFFN 166


>gi|320539812|ref|ZP_08039471.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
 gi|320029998|gb|EFW12018.1| putative predicted fimbrial transporter [Serratia symbiotica str.
           Tucson]
          Length = 403

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 54/248 (21%), Positives = 90/248 (36%), Gaps = 25/248 (10%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGR--NQYANSSSKKVMNLLNIAGED------------- 194
            V     +  A E++E+  +Q G    +  +  + K  N L I                 
Sbjct: 118 SVTLALKNADAAEIAESLNAQRGALLGERGSVVADKRTNALLIRDTAPVLALLKKRVAEM 177

Query: 195 -----QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK- 248
                QV L   I  +  + L ++G +  +             +F      +    S   
Sbjct: 178 DIPLAQVQLASYIVTINSENLHELGVRWGLAADERPAQPLRLDNFNVGLTQQKSTLSAGF 237

Query: 249 --GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               L        L ALE+   +  +A P L     Q+AS   G +  Y+  S ++GATS
Sbjct: 238 HLARLSGRLLNLELTALEQENRVEIIANPRLLTAHMQTASIKQGTEIPYEVSSGASGATS 297

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPSYRVRKADTTVELPS 364
           V   +  + +  TP VL  GRI L +    + P   +    G+  +   ++  T + +  
Sbjct: 298 VEFKEAVLGMEVTPRVLPDGRITLTLYISQNMPGRSVSRGEGEALTIDKQEIKTQITVKD 357

Query: 365 GGTIVLAG 372
           G TIVL G
Sbjct: 358 GETIVLGG 365


>gi|145597786|ref|YP_001161862.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229837374|ref|ZP_04457537.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
 gi|145209482|gb|ABP38889.1| outer membrane secretin family protein [Yersinia pestis Pestoides
           F]
 gi|229705497|gb|EEO91507.1| Type II/IV secretion system secretin RcpA/CpaC,associated with Flp
           pilus assembly [Yersinia pestis Pestoides A]
          Length = 149

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 49/154 (31%), Positives = 76/154 (49%), Gaps = 9/154 (5%)

Query: 322 VLSPGRIGLRIQTEVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           +    RI + +  EVS      N       PS R+RKA+TTVEL  G + +L GL+    
Sbjct: 1   MNEKKRIRVMLGEEVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTE 60

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVED 438
           ++  + IP +  +P+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +    
Sbjct: 61  RESLKKIPFIGDVPLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTS 118

Query: 439 DAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFI 472
             + FF    N           + + +    GFI
Sbjct: 119 TVERFF----NLTNIKDAKRRKQAKEFLQKGGFI 148


>gi|62297323|sp|P35819|PILQ_NEIGO RecName: Full=Type IV pilus biogenesis and competence protein pilQ;
           AltName: Full=Outer membrane protein omc; Flags:
           Precursor
 gi|1173875|gb|AAC43603.1| PilQ [Neisseria gonorrhoeae]
 gi|1589217|prf||2210365A pilQ gene
          Length = 720

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 41/231 (17%), Positives = 89/231 (38%), Gaps = 21/231 (9%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           K+++ L++    QV ++  I E      + +G +   TG     +++ A  +G      G
Sbjct: 465 KLIDELDVPA-QQVMIEARIVEAADGFSRDLGVKFGATGRKKLKNETSAFGWGVNSGFGG 523

Query: 243 GDF-----------------SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
           GD                           +    L A E  +  +TLA P +   + + A
Sbjct: 524 GDKWEAKPKSTCRLPCRKQHFAGARDFSGALNLELSASESLSKTKTLANPRVLTQNRKEA 583

Query: 286 SFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
              SG +  +   + S G  +T+       + L  T  +   G+I + ++     P    
Sbjct: 584 KIESGYEIPFTVTTRSGGGNSTNTELKKAVLGLTVTANITPDGQIIMTVKINKDSPRQCA 643

Query: 344 NAGD-MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           +  + +     +  +T   + +GGT+++ G+ +++       +PLL+  P+
Sbjct: 644 SGNNTILCISTKSLNTQAMVENGGTLIVGGIYEENNGNTLTKVPLLATSPL 694


>gi|32471479|ref|NP_864472.1| general secretion pathway protein D [precursor] [Rhodopirellula
            baltica SH 1]
 gi|32443320|emb|CAD72153.1| general secretion pathway protein D [Precursor] [Rhodopirellula
            baltica SH 1]
          Length = 1265

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 100/323 (30%), Gaps = 64/323 (19%)

Query: 160  AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            AV  ++T       +       +++++ L+      V +K  IAEV+ D   +IG +  +
Sbjct: 730  AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVQLDDGFEIGGEFGL 788

Query: 220  TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL---------------------------- 251
              S                 +    F+  G                              
Sbjct: 789  QDSLLFDRGKATGAIATGNPASDPGFNFGGTSVNLPNANSFGQENLASKGITSFGAGASQ 848

Query: 252  ----------------DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                               S    L  L  A  ++ L+ P +            G     
Sbjct: 849  LTQLSGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGFVQVGQSFPR 908

Query: 296  KTVSSSTGATS---------VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-- 344
             T  S TG T          +   + G++L  TP V + G I + I    S+        
Sbjct: 909  PTELSFTGGTGGTASQPIIGIEDEEIGIILRVTPRVGADGMIFMAIDASRSDINNNEGQI 968

Query: 345  --------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
                       +P+    +A  T+    G T+V  GL++   Q     +P LS IP++G 
Sbjct: 969  IGAFQDDVPIFVPAIDRTQAQATITAFDGQTVVFGGLIQKVRQNRTRRVPYLSNIPVVGT 1028

Query: 397  LFRNSRFNREETEIFIAATPFLV 419
             F+      + +E+ +  TP LV
Sbjct: 1029 FFKFDSEIEQRSELLVVMTPILV 1051


>gi|291569731|dbj|BAI92003.1| bifunctional pilus assembly protein PilQ/type II secretion pathway
           protein D [Arthrospira platensis NIES-39]
          Length = 785

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/206 (21%), Positives = 77/206 (37%), Gaps = 12/206 (5%)

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
            D     +                F + L A   +   + L +PTL    G++AS     
Sbjct: 561 TDGTLSALGSTTVSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVQEGETASVQLVQ 620

Query: 292 QHLYKTVSSSTGAT-------SVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV 343
           + L    ++ T                 G+ L      +   G + + I  EVS P   V
Sbjct: 621 EVLQSRTTTFTDTPSGTRETIQPQLVPVGLTLGVNVQRIDDNGFVTMTINPEVSSPGSQV 680

Query: 344 NAGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
             G    +     R   +  + L  G T++++G+++D  +     IPLL  +PILG+LFR
Sbjct: 681 GTGGDDFVLQIFRRNLQSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPILGSLFR 740

Query: 400 NSRFNREETEIFIAATPFLVKPVAMR 425
            S  + E  E+ +  TP ++      
Sbjct: 741 RSSTSSERAEVIVLVTPSILDDSDRS 766


>gi|171909982|ref|ZP_02925452.1| general secretion pathway protein D [Verrucomicrobium spinosum DSM
           4136]
          Length = 632

 Score =  118 bits (295), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 25/228 (10%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +    ++  S+ F         +         V D    + ++HALE+   +   +
Sbjct: 306 GVPGTSNYDNASTSEGFKTTASSSEHNSLYQDGPGLVFDAMQVQAIVHALEQNGIVSQES 365

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------------THD 311
            PT+     +    +   +    T + S      T                      + +
Sbjct: 366 CPTIITEDNEQGIISIVDRFPIVTTNVSQTDAGQTITDEVRYKVDKDDPDAMEEPDKSRE 425

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            GV L  TPT+L  G + ++++  V+   E V G N    P      AD    +P+G ++
Sbjct: 426 IGVTLTVTPTMLPDGTVRMKLRPRVAKIVELVQGNNGNVYPRVSESTADAISRIPAGQSL 485

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           +L G         K  +P+L  +P+L  LFR      E+  +    TP
Sbjct: 486 ILGGFYDYSSSNNKNKVPVLGNVPVLKHLFRYKEKTMEKVSLVFIITP 533


>gi|171915532|ref|ZP_02931002.1| fimbrial assembly protein [Verrucomicrobium spinosum DSM 4136]
          Length = 634

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 104/321 (32%), Gaps = 81/321 (25%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             +++    A   QV +++ + EV    +K++G    +   +   S+   A  GG+ V  
Sbjct: 300 DSLVDQAVNATAKQVEIQIRMVEVSDARVKELGIDWLLGQFNVPGSEKIFASGGGQSVPG 359

Query: 242 ------------------------------------------GGDFSVKGVLDRFSFETV 259
                                                      G F+V GVL    F+ V
Sbjct: 360 EVLPFAGRTVTDGLRSATEVLGLRSSGTRIGRALVPGADAKSPGAFAVSGVLTDPQFQGV 419

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---------------TGA 304
           L  L ++  I  +A PTL   SGQ A+     +  Y     +               +  
Sbjct: 420 LRGLNQSKGIDVMATPTLFTKSGQRAALKMVKEFRYPKEYDAPETPTRTTGGGLGKPSSP 479

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD----------------- 347
            S    D G+V    P +     I L +     E    ++ G                  
Sbjct: 480 RSFEKRDVGIVFEVEPVIGQNKVIELSLSPSFLEFEGFIDYGQDFQNSTTDRLTGQPVYF 539

Query: 348 -------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                   P +R  +  T V +  G T+VL G   +   +  + +P++  +P++G  F++
Sbjct: 540 TVENQILQPIFRANRISTAVSIWDGCTVVLGGAAFEKRFRADDKVPVVGDLPLIGRTFQS 599

Query: 401 SRFNREETEIFIAATPFLVKP 421
                E T +    T  +V P
Sbjct: 600 KVKQVERTNVLFFVTARIVDP 620


>gi|310767456|gb|ADP12406.1| Type III secretion apparatus [Erwinia sp. Ejp617]
          Length = 588

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%)

Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           + F+ D SN  VE  +      G      DS   V  S+T        +   S  + ++ 
Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            ++IA + Q+ L + I ++ ++ + ++G Q S +         F         S      
Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   +F   + AL  + + + ++ P +       A F +      K V      +S
Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428

Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360
           +    YG ++   P +      I + +           +        +P     +  T  
Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P G ++++ G  ++  +    GIPLL  IP LG +F  S  ++ +        P L+
Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547


>gi|186685099|ref|YP_001868295.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
 gi|186467551|gb|ACC83352.1| type II and III secretion system protein [Nostoc punctiforme PCC
           73102]
          Length = 792

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 41/215 (19%), Positives = 84/215 (39%), Gaps = 19/215 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------STGATSVT 308
               L A  +    + L +PTL    GQ+A+     + +             +T   S  
Sbjct: 581 LLASLQAQVQNGNAKILTDPTLIVQEGQTANVNLTQEVVGNIKREIVRDSNLATETISAE 640

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADT-T 359
               G+ L      +   G + L +   V  P       V G  +  +     R  ++ +
Sbjct: 641 KDRVGLTLAVKVERIDDNGFVSLSVAPVVKAPQAPATINVGGGGSQQIFLVSERSLNSGS 700

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G+++D  +     IP+L  +P++G+LFR++  + +  E+ +  TP ++
Sbjct: 701 IRLRDGQTLILSGIIQDSDRTTVSKIPILGDLPLIGSLFRSTNRSNQRNEVIVLLTPQIM 760

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
                        +Y+   + +     R  K+ G 
Sbjct: 761 DDTENSSYGY---NYTPSPEVRQILERRGLKVPGR 792


>gi|118579256|ref|YP_900506.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
 gi|118501966|gb|ABK98448.1| type II and III secretion system protein [Pelobacter propionicus
           DSM 2379]
          Length = 767

 Score =  117 bits (294), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 99/308 (32%), Gaps = 57/308 (18%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               +V L++ + EV+ +   +  F  S     S               +     S    
Sbjct: 311 RQVPEVLLEMKVLEVQLNDKFESAFTISTISGGSQTGPDDGQVANPLNTAASAVGSTLLG 370

Query: 251 LDRFSFE----TVLHALERATAI-----------RTLAEPTLTAISGQSASFTSGGQHL- 294
           +  F+           L     +            T+A P L A +   A    G + + 
Sbjct: 371 MGNFALNSESTLTYQFLSSDLRLRLQLLQQNNNLTTIATPMLMAANNHPARLFIGEETVL 430

Query: 295 ---------------YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
                             V+++       T   G  L   P++ +   + +RI  E S  
Sbjct: 431 TTGFTTMTSTSTTTSGVVVNNTLPVPVTETKSVGNTLTILPSINADRSVVMRIVHENSSV 490

Query: 340 VIGVNAGDMP-----------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
                +  +P           +    K + TV    G T+ + G+++ +I   +  +PLL
Sbjct: 491 KTNGASIPLPVGTTVQTVSIDTVNTSKLEGTVLAQDGMTVAVGGMMRTNITDYESKVPLL 550

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRV 448
             IP LG  F+  +  + +TE+ +  TP++++                 +  +A    R+
Sbjct: 551 GDIPYLGFFFKQKQKIKTKTELVLLITPYILQA---------------PNLGEAVTRRRL 595

Query: 449 NKIYGPKE 456
           N + G   
Sbjct: 596 NDLSGNTG 603


>gi|259908646|ref|YP_002649002.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|224964268|emb|CAX55775.1| Type III secretion apparatus [Erwinia pyrifoliae Ep1/96]
 gi|283478618|emb|CAY74534.1| Type III secretory protein InvG [Erwinia pyrifoliae DSM 12163]
          Length = 588

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 107/299 (35%), Gaps = 28/299 (9%)

Query: 128 RRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           + F+ D SN  VE  +      G      DS   V  S+T        +   S  + ++ 
Sbjct: 270 KSFMPDFSNEEVEADNH-----GSDTASNDSVNIVAYSDTNSLLVMGTERQVSFVEDIIQ 324

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
            ++IA + Q+ L + I ++ ++ + ++G Q S +         F         S      
Sbjct: 325 AIDIA-KRQIQLSLWIIDISKEDINELGVQWSGSAKIGSTGVIFGTSSLTPESS------ 377

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                   +F   + AL  + + + ++ P +       A F +      K V      +S
Sbjct: 378 -------INFLADVSALVESGSAQVISRPEILTQENVPALFDNNSSFYAKLVGERN--SS 428

Query: 307 VTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA-----GDMPSYRVRKADTTV 360
           +    YG ++   P +      I + +           +        +P     +  T  
Sbjct: 429 LEKITYGTMISVLPRLAEHQQEIEMILNIHDGNVPRDASGASAHVDSLPVISNTQISTEA 488

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +P G ++++ G  ++  +    GIPLL  IP LG +F  S  ++ +        P L+
Sbjct: 489 RVPLGYSLLVGGYSRNQDEYHNIGIPLLRDIPYLGKIFDYSYTSQTKMVRLFLIHPELL 547


>gi|320174026|gb|EFW49196.1| General secretion pathway protein D [Shigella dysenteriae CDC
           74-1112]
          Length = 164

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 54/112 (48%), Gaps = 2/112 (1%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D   +    +PLL  IP++G LF+++   +E+  + +   P +++     D
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGKLFKSTADKKEKRNLMVFIRPTILRDGMAAD 110


>gi|262277342|ref|ZP_06055135.1| putative outer membrane protein [alpha proteobacterium HIMB114]
 gi|262224445|gb|EEY74904.1| putative outer membrane protein [alpha proteobacterium HIMB114]
          Length = 544

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 56/275 (20%), Positives = 105/275 (38%), Gaps = 30/275 (10%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI----------------GF 215
              +     ++K+++ ++I  +  V ++  I        K+                 G 
Sbjct: 273 TGTKQQLDQTEKLLDKIDIERKS-VMIEAFIVNAEDGFAKKFDANLEMISSTAAGDFRGG 331

Query: 216 QHSITGSSSG-----------PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
             S  G+  G            + S +AD      +  G   + G + R      + A  
Sbjct: 332 NQSGIGTIIGATNPQGNQLEVGTPSPSADTSLTAPTLQGGTLIIGSIGRALLSATIAASV 391

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
             T   T++ P + AI GQ A+ + G Q +    +S   A    T D+ +    TPT++ 
Sbjct: 392 SDTNSETISNPKIFAIDGQQATISQGTQQVRSVPASGGDAGGFETLDFTLNFGVTPTIVG 451

Query: 325 PGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
             ++ L+I         G    + P        +TV L +G   +L G+ K+  Q     
Sbjct: 452 D-KVRLQISLANDSLGQGGTDANTPK-NTENVTSTVVLNNGDVAILGGVYKNTKQDDIIF 509

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL +IP+LG  F+    +  ++++ I  T  +V
Sbjct: 510 VPLLHRIPVLGEFFKKKTKSDTKSQLLIFVTANIV 544


>gi|149925789|ref|ZP_01914053.1| putative Type II secretory pathway component PulD [Limnobacter sp.
           MED105]
 gi|149825906|gb|EDM85114.1| putative Type II secretory pathway component PulD [Limnobacter sp.
           MED105]
          Length = 646

 Score =  117 bits (292), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 100/305 (32%), Gaps = 36/305 (11%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V T  +S     +++    +            + +  +    + Q+ ++  I E+  
Sbjct: 263 SGRVITNPESGTVSVIAKPSQHRRVA---------QWLTQIQRRVDRQIVIEAVITEISL 313

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +   + G   ++         +  A  G    +    F+             L  LE   
Sbjct: 314 NDRYERGIDWNVL--RQNGITAGLAVQGLNLGNPALTFNALRNTGNTDTSVALRLLEEFG 371

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------------SSTGATSVTTHDYGVV 315
               L+ P +  ++ Q+A        +Y T               ST  T V T   G +
Sbjct: 372 KTEVLSSPRVVTMNQQAAVLKVIDNRVYFTTDVQTSAPTQNSPAFSTFTTQVQTVPVGFL 431

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-----------MPSYRVRKADTTVELPS 364
           +  TP +     I LR++  +S  V  V   +           +P  + R+ ++ + L S
Sbjct: 432 MTVTPQIADNNAIQLRVRPTLSRIVGFVQDPNPALQQLNIISRVPEVQTRELESILRLKS 491

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
           G   +L GL + +   L  GIP   +   +  + ++        E+ +     +++    
Sbjct: 492 GEMALLGGLRQKENSSLSRGIPGAPE--SVDLITQSKNRGESHIELVVLLKATVLESATA 549

Query: 425 RDLSR 429
             L  
Sbjct: 550 NQLQT 554


>gi|16330870|ref|NP_441598.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
 gi|1653364|dbj|BAA18278.1| general secretion pathway protein D [Synechocystis sp. PCC 6803]
          Length = 785

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 40/208 (19%), Positives = 79/208 (37%), Gaps = 19/208 (9%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFT-------SGGQHLYKTVSSSTGATSVT 308
           F+  + A  R+   + L +PTL    G++A          S    +     ++    +  
Sbjct: 573 FQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPV 632

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMPSYRVRKADT-T 359
             D G+ L+     +   G I LR+   V+ P              ++     R+  +  
Sbjct: 633 LEDVGLTLNVIVDRIDDNGFITLRVNPIVASPAGTQVFDSGAGAINEITLINKRELTSGV 692

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L    T +L+G++ +  +     +P+L  +P++GALFR S    + +E+ I  TP ++
Sbjct: 693 VRLRDDQTFILSGIISELQRSTTSKVPILGDLPVIGALFRQSTDTTDRSEVIILMTPKII 752

Query: 420 KPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
                         Y+ +     F   +
Sbjct: 753 HDSTEAQF---GFRYNPDAATAEFLRQK 777


>gi|330963695|gb|EGH63955.1| type III secretion component [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 195

 Score =  117 bits (292), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 41/190 (21%), Positives = 77/190 (40%), Gaps = 10/190 (5%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FGK  GQ ++I +  
Sbjct: 16  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGKAAGQTSLIALDS 75

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           +G++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 76  EGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 134

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 135 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 185

Query: 225 GPSKSFAADF 234
             S       
Sbjct: 186 TFSFGLLTGG 195


>gi|320184380|gb|EFW59192.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
          Length = 164

 Score =  116 bits (290), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 53/112 (47%), Gaps = 2/112 (1%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
            D   +    +PLL  IP++G LF+++   +E+  + +   P ++      D
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILHDGMAAD 110


>gi|160875361|ref|YP_001554677.1| YscC/HrcC family type III secretion outer membrane protein
           [Shewanella baltica OS195]
 gi|160860883|gb|ABX49417.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS195]
 gi|315267560|gb|ADT94413.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS678]
          Length = 491

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPSMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A          K          
Sbjct: 313 STVIGNTGNFMMRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+ +  +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|113475300|ref|YP_721361.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
 gi|110166348|gb|ABG50888.1| type II and III secretion system protein [Trichodesmium erythraeum
           IMS101]
          Length = 801

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 44/215 (20%), Positives = 78/215 (36%), Gaps = 15/215 (6%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             +                    +L    F + L A   +   + L +PTL    G+ AS
Sbjct: 564 GVNPTNGLLDVTPGNADFGLFPQILYPKRFLSQLRATIVSGNAKILTDPTLVVQEGEVAS 623

Query: 287 FTSGGQHLYKTVSSSTGA-------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSE 338
                  +    S+ T          +V   D G+ L      +   G + + +  EVS 
Sbjct: 624 LKLVNNIVRSIDSNFTDDGGTSRETRTVQFEDVGLNLVIQVERIDDNGFVTVTVNPEVSF 683

Query: 339 PVIGVNAGDMPS------YRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
               V      S         RK  +  + L  G T++++G++++  +     +PLL  +
Sbjct: 684 ISDRVRTDANNSSEFGTEIASRKVQSGRIRLRDGQTLIISGIIQEQERTAVTKVPLLGDL 743

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           PI+GALFR+S+   E  E  +  TP ++       
Sbjct: 744 PIIGALFRSSQNQNERAETIVLLTPQILDDGDRSS 778


>gi|167466375|ref|ZP_02331079.1| putative outer membrane secretin family protein [Yersinia pestis
           FV-1]
          Length = 140

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/141 (34%), Positives = 71/141 (50%), Gaps = 9/141 (6%)

Query: 335 EVSEPVIGVN---AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
           EVS      N       PS R+RKA+TTVEL  G + +L GL+    ++  + IP +  I
Sbjct: 5   EVSSIDKVFNLRGGDSYPSLRIRKANTTVELGDGESFILGGLISSTERESLKKIPFIGDI 64

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
           P+LGALFRN++  R ++E+ + AT  LVKPV+ R +  PD  +      + FF    N  
Sbjct: 65  PLLGALFRNAQTQRNQSELVVVATVNLVKPVSARQIELPD--FMHTSTVERFF----NLT 118

Query: 452 YGPKEASEVEGQNYKGAIGFI 472
                    + + +    GFI
Sbjct: 119 NIKDAKRRKQAKEFLQKGGFI 139


>gi|304408552|ref|ZP_07390173.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS183]
 gi|307305380|ref|ZP_07585128.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica BA175]
 gi|304352373|gb|EFM16770.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS183]
 gi|306911683|gb|EFN42108.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica BA175]
          Length = 491

 Score =  115 bits (288), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A          K          
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+ +  +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|297567918|ref|YP_003686888.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
 gi|296852367|gb|ADH65380.1| type II and III secretion system protein [Meiothermus silvanus DSM
           9946]
          Length = 670

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 66/330 (20%), Positives = 122/330 (36%), Gaps = 24/330 (7%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
           G+ +       +      E  + R +     +   V   + L G +              
Sbjct: 310 GQLLATRPPEPKPVEKPQEKPVERSLPLGYAKATTV---IDLVGKLLPESKEVALAADER 366

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG 225
           T        Q A ++ ++++  L+     QV L+V + ++      +IG           
Sbjct: 367 TNTVLLRGPQAAVAAIERLVGDLDRPIP-QVDLQVRVEQLSSSNGDEIGAALEA------ 419

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +    +        + G     G          L AL+ A   R+L +   T  SG+S 
Sbjct: 420 -ALGPLSLKADPGSGQYGLGLEVGKTGLLKLNAALKALQSAGKGRSLIDSRFTVSSGESV 478

Query: 286 SFTSGGQHLYK-------TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
           +  SGG  L           S  T  T +   ++G+ L  TPTV+   +I L +   +  
Sbjct: 479 NLLSGGSLLIPLTSTGTGGSSGGTSTTGLQNVEFGLELKLTPTVIPGDKIQLGVNINLGS 538

Query: 339 PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
               V   +      ++  + V L SG + VL G++  + ++ + GIP+L  +P++G LF
Sbjct: 539 -APTVGPNNSTLVPKQQLTSNVLLSSGNSAVLGGVISVEEKESRSGIPVLMDLPLIGGLF 597

Query: 399 RNSRFNREETEIFIAAT-----PFLVKPVA 423
             +  +  +T + I  T     P  VKP +
Sbjct: 598 SQTVKSSSQTHLLIVVTAVSRLPEAVKPAS 627


>gi|78186891|ref|YP_374934.1| Type II secretory pathway component PulD-like [Chlorobium luteolum
           DSM 273]
 gi|78166793|gb|ABB23891.1| Type II secretory pathway component PulD-like protein [Chlorobium
           luteolum DSM 273]
          Length = 588

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/273 (17%), Positives = 101/273 (36%), Gaps = 20/273 (7%)

Query: 166 TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA----EVRRDILKQI--GFQHSI 219
            ++  +  +     +        N+   D V +   I     E+       +  G     
Sbjct: 230 EYIRSNPDSMSEGQNPGAASMEENLPMPDMVIIDAVILRNEDEITHSKGVNLLNGLSLQF 289

Query: 220 TGSS---------SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER-ATAI 269
             SS            S +   D     +++    ++ G++   +    ++     ++ I
Sbjct: 290 GNSSNPAISFNRAYSSSWTHNPDGTDDTIAKSITNTITGIISVPALTYSMNIFNMGSSKI 349

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
             +A PTLT +    + F SG Q       S+  +      + GV +H  P  ++  ++ 
Sbjct: 350 DVIARPTLTGMLNIDSEFFSGNQIDAAVAGSADSSPISINKEIGVTMHVRPNEITRNKVK 409

Query: 330 LRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           L ++   S         +    M +    K  T V++  G T++L+GL + +    ++G+
Sbjct: 410 LHVEVSRSFLDTTDKDKITYQYMVTTSNTKVTTDVDIAFGETMILSGLYEREAVDTRDGV 469

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           P+L  IP+L  LF        +  + I  TP++
Sbjct: 470 PILQDIPLLQYLFSKKTERLFQRSVIILLTPYI 502


>gi|126174170|ref|YP_001050319.1| YscC/HrcC family type III secretion outer membrane protein
           [Shewanella baltica OS155]
 gi|125997375|gb|ABN61450.1| type III secretion outer membrane pore, YscC/HrcC family
           [Shewanella baltica OS155]
          Length = 491

 Score =  115 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 95/263 (36%), Gaps = 31/263 (11%)

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG------------ 192
           V + G+V  +++  +  +++               ++    N + + G            
Sbjct: 200 VSIPGLVTVLKEMDQGTQVANAVAGSVSNISGPVFAADPRQNAIIVRGSARDMATYGSLI 259

Query: 193 ------EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    + + V+I +V     KQ+G   S +    G S SF +        +  D  
Sbjct: 260 RQLDTKPTMIEVSVSIFDVDASDFKQLGIDWSASAKLGGGSVSFNSG-------DSSDNF 312

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
              + +  +F   L+ALE+ +  + L+ P++  ++   A          K          
Sbjct: 313 STVIGNTGNFMLRLNALEKNSKAKVLSRPSVVTLNNVQAVLDKNVTFYTKL--EGDKVAK 370

Query: 307 VTTHDYGVVLHFTPTVLSP---GRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
           + +   G +L  TP ++       + L +  +  +    V+ +  +P  +  +  T   L
Sbjct: 371 LESVTTGSLLRVTPRLIDEVGHQAVMLDLNIQDGQQSQAVSRSEPLPQVQNSEISTQATL 430

Query: 363 PSGGTIVLAGLLKDDIQQLKEGI 385
            SG +++L G ++D  +  +  I
Sbjct: 431 KSGESLLLGGFVQDRDETTQNKI 453


>gi|327538876|gb|EGF25517.1| general secretion pathway protein D [Rhodopirellula baltica WH47]
          Length = 1261

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/320 (19%), Positives = 103/320 (32%), Gaps = 61/320 (19%)

Query: 160  AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
            AV  ++T       +       +++++ L+      V +K  IAEVR D   +IG +  +
Sbjct: 730  AVAEAQTNSVLLSVSPRIYEEVRQLIDRLD-RRPPMVLIKTLIAEVRLDDGFEIGGEFGL 788

Query: 220  TGS-------------SSGPSKSFAADFGGKFVSEGGDFS-------------------- 246
              S             +  P+     +FGG  +     F                     
Sbjct: 789  QDSLLFDRGKATGAIATDNPASDPGFNFGGTNLPNSNSFGQESLASQGLTNFGATATQLT 848

Query: 247  ---------VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
                             S    L  L  A  ++ L+ P +            G      T
Sbjct: 849  RVGGLNSGGFVFSAASESVNLFLRTLRVANRLQILSRPEIMTADNTEGYVQVGQNFPRPT 908

Query: 298  --------VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-- 347
                     +S+     +   D G++L  TP V + G I + I    S     V      
Sbjct: 909  ELTFTSTGGNSTQPIIGIEDVDIGIILRVTPRVGADGMIFMAIDATRSAINNDVGQTIGS 968

Query: 348  --------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                    +P+     A  TV    G T+V  GL++   Q     +P L+ IP+LG  F+
Sbjct: 969  FDNGDPIFVPAIDTTTAQATVTAFDGQTVVFGGLIQKYRQNRTSRVPYLADIPLLGTFFK 1028

Query: 400  NSRFNREETEIFIAATPFLV 419
                  + +E+ +  TP LV
Sbjct: 1029 YDSEIEQRSELLVVMTPILV 1048


>gi|257061946|ref|YP_003139834.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
 gi|256592112|gb|ACV02999.1| type II and III secretion system protein [Cyanothece sp. PCC 8802]
          Length = 899

 Score =  114 bits (286), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + + A  +++  + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 690 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 749

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360
           D G+ L      +   G I L +   ++        +         +     R+  +  +
Sbjct: 750 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 809

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP ++
Sbjct: 810 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 868


>gi|75909894|ref|YP_324190.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
 gi|75703619|gb|ABA23295.1| type II and III secretion system protein [Anabaena variabilis ATCC
           29413]
          Length = 811

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/210 (17%), Positives = 76/210 (36%), Gaps = 16/210 (7%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            +        G   +            +      L A  +    + L +PTL    GQ A
Sbjct: 572 NADGTTTITQGTLGTATTSLPTIYQFPKRLL-ASLQAQVQNGNAKVLTDPTLIVQEGQQA 630

Query: 286 SFTSGGQHLYKTVSSSTGATSVTT-----------HDYGVVLHF-TPTVLSPGRIGLRIQ 333
                 +       S   +++ +             + G+ L+     +   G + L + 
Sbjct: 631 VVKLTTEVFGGFEESGQSSSTGSNTQSSSTKKPIIKEAGLSLNVKVERIDDNGFVSLSVA 690

Query: 334 TEVSEP--VIGVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
             VS P      + G +     R   +  + L  G T++L+G++++  +     +P+L  
Sbjct: 691 PTVSAPGGSTQTSDGQITLLSARSLQSGLIRLRDGQTLILSGIIQESDRSTVSKLPILGD 750

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVK 420
           +P++G+LFR +    E  E+ +  TP ++ 
Sbjct: 751 LPLIGSLFRKTNRTNERREVIVLLTPQVMD 780


>gi|17228526|ref|NP_485074.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
 gi|17130377|dbj|BAB72988.1| general secretion pathway protein D [Nostoc sp. PCC 7120]
          Length = 823

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 39/180 (21%), Positives = 73/180 (40%), Gaps = 15/180 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVT 308
               L A       + L +PTL    GQ+A+     + +    S +T          +  
Sbjct: 613 LLANLQAQVTNGNAKILTDPTLIVQEGQTANVKLTQEVVGNITSETTRGDGASTQTVTAE 672

Query: 309 THDYGVVLHFT-PTVLSPGRIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADT-TV 360
             D G+ L      +   G + L +   V  P       +  N+  +     R  ++  +
Sbjct: 673 KTDVGLTLAVKIDRIDDNGFVSLSVAPVVKAPQSSAVINVSGNSQTIFLVSERSLNSGMI 732

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++L+G+++D  +     IP+L  IP++G+LFR +    E  E+ +  TP ++ 
Sbjct: 733 RLRDGQTLILSGIIQDQDRTSVSKIPILGDIPLIGSLFRKTNRTNERREVIVLLTPQVMD 792


>gi|218248885|ref|YP_002374256.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
 gi|218169363|gb|ACK68100.1| type II and III secretion system protein [Cyanothece sp. PCC 8801]
          Length = 743

 Score =  114 bits (285), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 37/179 (20%), Positives = 76/179 (42%), Gaps = 15/179 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH----- 310
           F + + A  +++  + L +PTL    GQ A+     + +    +     + V T      
Sbjct: 534 FLSQIEATIQSSNGKVLTDPTLVVQEGQQATVKLTQKVIENITTQVDPLSGVRTTTPVLS 593

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVS--------EPVIGVNAGDMPSYRVRKADT-TV 360
           D G+ L      +   G I L +   ++        +         +     R+  +  +
Sbjct: 594 DAGLTLTIDIDKIDDNGFISLTVSPTIAAIGDVQPFDSGADGGFNQLFLLARRELTSGLI 653

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            L  G T++L+G++ +  Q +   +P+L  IP+LGALFR+    +  +E+ +  TP ++
Sbjct: 654 RLRDGQTLILSGIISETDQTITNKVPILGDIPLLGALFRSQTDTKNRSEVIVLLTPQIL 712


>gi|330882763|gb|EGH16912.1| type III secretion component [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 215

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 44/203 (21%), Positives = 82/203 (40%), Gaps = 10/203 (4%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
           G    + + + +  +L     V  V+V++P  AD+ V SP  +Y+FG+  GQ ++I +  
Sbjct: 23  GAKGTVDLAIGEGRVLHFSAPVDSVMVAEPGIADLQVVSPGVIYVFGQAAGQTSLIALDS 82

Query: 105 DGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
           DG++   L + +    A +   L+     S  R+      V+  G V+ + ++     L 
Sbjct: 83  DGRETAALSLAVSSGTAAVTRPLKALHPQSQARINASGSRVIASGSVQDVGEATDLNAL- 141

Query: 165 ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
                          + +  +N    AG  QV ++V  AEV R  L + G   +   ++ 
Sbjct: 142 ---------LSTEGQNFQSTVNSATYAGSAQVNIRVRFAEVSRSELLRYGVNWNALFNNG 192

Query: 225 GPSKSFAADFGGKFVSEGGDFSV 247
             S            + GG  +V
Sbjct: 193 TFSFGLLTGGALAADAAGGASNV 215


>gi|325275757|ref|ZP_08141634.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
 gi|324099108|gb|EGB97077.1| type II/IV secretion system protein D [Pseudomonas sp. TJI-51]
          Length = 310

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 108/318 (33%), Gaps = 79/318 (24%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I I       L++PV ++ V V +P  ADV     R + +     G  ++++        
Sbjct: 39  IEIDQGLQQELRLPVAIERVAVGEPKVADVQASGERGVVITAVGQGNTSLMMW------- 91

Query: 110 LNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
                                                      T    +  V +     +
Sbjct: 92  ----------------------------------------TACTPSPHKAMVFVRGRASA 111

Query: 170 QSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
              ++ +  S   ++          QV   +   EVRR   K+ G +    GS++    S
Sbjct: 112 DMAQDSFLPSQDTQL--------PSQVQADIRFVEVRRSKYKEAGARLFFKGSNNSLIGS 163

Query: 230 FAADFGG------------------------KFVSEGGDFSVKGVLDRFSFETVLHALER 265
                                              +   F++        F  +++ALE 
Sbjct: 164 PGTVPNTVVRPDYVPGAQTGENPIAYADVRPGIPLDNSVFNIVWGGGSSRFLAMINALEN 223

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
           +    TLA P+LT +SGQ+ASF +GG+      S+ +   S+   ++GV L  TPTV+S 
Sbjct: 224 SGFAYTLARPSLTVLSGQTASFLAGGEIPIPVPSAGSDNVSIEYKEFGVRLALTPTVISQ 283

Query: 326 GRIGLRIQTEVSEPVIGV 343
           GRI L++  EVSE     
Sbjct: 284 GRITLKVAPEVSELDYSN 301


>gi|254448224|ref|ZP_05061686.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
 gi|198262091|gb|EDY86374.1| Bacterial type II and III secretion system protein [gamma
           proteobacterium HTCC5015]
          Length = 629

 Score =  113 bits (283), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 47/235 (20%), Positives = 86/235 (36%), Gaps = 12/235 (5%)

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
           ++     F         +     SV  V    +    L+A  +      LA PTL A +G
Sbjct: 351 NTANGDIFDPRLNTNQETITNFISVPAVNYNLNI---LNA--KDGVNEILARPTLVARAG 405

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           Q++ F SG +     VS   G +     + GV L  TP     G I L+++ E +     
Sbjct: 406 QTSEFFSGVEVSAAAVSGGAGDSISVEKEIGVKLAVTPEFGPDGSIILQVEAERTFLTTP 465

Query: 343 VNAGDM---PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
            ++              +  V +  G T++L GL + + +   +G+P+L  IP++   F 
Sbjct: 466 SSSVLFEFRLDTTKTTVNANVAMNYGQTLILGGLNERETENDSDGVPILRDIPLINLFFS 525

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGP 454
                  +  + I  TP      A    + P++  +  +        ++   Y  
Sbjct: 526 RKTQRDFKKSVMILLTPR----PASYMYTDPEESRASIEARSEAIRGQLQDRYQT 576


>gi|56751665|ref|YP_172366.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
 gi|56686624|dbj|BAD79846.1| type IV pilus assembly protein PilQ [Synechococcus elongatus PCC
           6301]
          Length = 725

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84
            ++    +          +   I + + +       V      +   A      +     
Sbjct: 263 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 322

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
            ++  F K V  +   +               +  I  L  T  +   +  ++       
Sbjct: 323 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 375

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202
           + + G        +     ++   +         +   +  ++  L++  + Q ++ V +
Sbjct: 376 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 434

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240
            ++  + L  I    S    ++  S S                      F        ++
Sbjct: 435 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 494

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                         +F   L A       + L +PTL    G+ +      Q + K  S 
Sbjct: 495 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 554

Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344
           +T           ++   D G+ L      +   G I L +   +S P           N
Sbjct: 555 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 614

Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                  + R+  +  + L    T++L+G+++D+ ++    IPLL  +P++G+LFR S  
Sbjct: 615 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 674

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +R+  E+ +  TP +   +A  D +     Y     A++   N + 
Sbjct: 675 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 717


>gi|85058539|ref|YP_454241.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
 gi|84779059|dbj|BAE73836.1| type III secretion apparatus InvG [Sodalis glossinidius str.
           'morsitans']
          Length = 586

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + Q+ L + I ++ ++ + Q+G   +   +    S  F             + S     
Sbjct: 328 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 374

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + F   + AL      + +A P +       A F +      +     T    +    
Sbjct: 375 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 432

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364
           YG ++   P + S  +  + +  ++ +  +     +       +P     +  T   +P 
Sbjct: 433 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 491

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G ++++ G  +D       GIP+L  IP LG LF       ++        P L+
Sbjct: 492 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 546


>gi|209528276|ref|ZP_03276739.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
 gi|209491296|gb|EDZ91688.1| type II and III secretion system protein [Arthrospira maxima
           CS-328]
          Length = 737

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/205 (22%), Positives = 78/205 (38%), Gaps = 12/205 (5%)

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
           D     +                F + L A   +   + L +PTL    G+SAS     Q
Sbjct: 514 DGSITALGSTTFSVFPFFQYPRRFLSTLQAQIVSGRAKILTDPTLVVKEGESASVQLVQQ 573

Query: 293 HLYKTVS-------SSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVN 344
            L    +        S         + G+ L      +   G + + I  EVS P   V 
Sbjct: 574 VLQSRTTIITDTPSGSRETIQPDPTNVGLTLGVNVERIDDNGFVTMSINPEVSSPGARVA 633

Query: 345 AGDMPSY---RVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G+   +     R   +  + L  G T++++G+++D  +     IPLL  +PI+G+LFR 
Sbjct: 634 TGNDDFFLQVFRRSLSSGRIRLRDGQTLIVSGIIQDQERTDVSKIPLLGDLPIVGSLFRR 693

Query: 401 SRFNREETEIFIAATPFLVKPVAMR 425
           S  + E  E+ +  TP ++      
Sbjct: 694 STTSSERAEVIVLVTPNILDDSDRS 718


>gi|218660088|ref|ZP_03516018.1| pilus assembly secretion protein [Rhizobium etli IE4771]
          Length = 157

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 83/160 (51%), Positives = 106/160 (66%), Gaps = 4/160 (2%)

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           S G     K  + ++   T L+ALE+A  +RTLAEPTLTAISGQ+A+F SGGQ LY T  
Sbjct: 2   SGGLAALFKSSIGKYDISTYLNALEQAKVVRTLAEPTLTAISGQAATFNSGGQQLYSTT- 60

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
            + G  +V   +YG+ L F P VLS GRI L I+T VSEPV G        Y+ R A+T+
Sbjct: 61  DNDGNVTVVPFNYGINLAFKPVVLSSGRISLEIKTNVSEPVAGSGNAT---YQRRSAETS 117

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           VELPSGG+I LAGL++D++ Q   G P +SKIP+LG LFR
Sbjct: 118 VELPSGGSIALAGLIRDNVSQTMGGTPGVSKIPLLGTLFR 157


>gi|81301259|ref|YP_401467.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
 gi|81170140|gb|ABB58480.1| general secretion pathway protein D [Synechococcus elongatus PCC
           7942]
          Length = 771

 Score =  113 bits (282), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/466 (13%), Positives = 146/466 (31%), Gaps = 57/466 (12%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD-----VVVHSP 84
            ++    +          +   I + + +       V      +   A      +     
Sbjct: 309 AQSAFNYVLQIAGLQASRRDNVILVGRNLPPSAGGLVSRTFRLNQAVAQNVAGYLTTLGA 368

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
            ++  F K V  +   +               +  I  L  T  +   +  ++       
Sbjct: 369 NSVVSFTKKVCVST-GVQDTTATGGGAGTGAGQGQIQTLSQTSAQCFDEPEVK------E 421

Query: 145 VVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS--SKKVMNLLNIAGEDQVTLKVTI 202
           + + G        +     ++   +         +   +  ++  L++  + Q ++ V +
Sbjct: 422 LKVPGTPAGPLPLKNISITADIRTNSLSIVGDPQAINFATGLIQQLDLR-KRQASVNVKV 480

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKS----------------------FAADFGGKFVS 240
            ++  + L  I    S    ++  S S                      F        ++
Sbjct: 481 IDLDLNDLNAIATSFSFGIGNTLFSGSGGLRTTVIDNAGSVIQPPNDSVFNPSNLPAGIN 540

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                         +F   L A       + L +PTL    G+ +      Q + K  S 
Sbjct: 541 PANPLLALPNQLTNNFLGALSASIINNKTKLLTDPTLIIQEGERSEVKLTSQVVQKIESE 600

Query: 301 STGA--------TSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEP-------VIGVN 344
           +T           ++   D G+ L      +   G I L +   +S P           N
Sbjct: 601 TTTNGSGPPTVSRTIDLADVGLQLTINIERIDDNGFITLTVLPAISSPQDVVTFGDPNTN 660

Query: 345 AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                  + R+  +  + L    T++L+G+++D+ ++    IPLL  +P++G+LFR S  
Sbjct: 661 GVLTTLIKKREVSSGKIRLRDSQTLILSGIIQDEERERVAKIPLLGDLPLIGSLFRTSYT 720

Query: 404 NREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVN 449
           +R+  E+ +  TP +   +A  D +     Y     A++   N + 
Sbjct: 721 DRQRREVVVVITPKI---LADTDATVFGYGYQPSPPAQSVLNNTLQ 763


>gi|318607000|emb|CBY28498.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 531

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 12/216 (5%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----S 227
             +        +V+  L+I    QV ++  I E +      +G Q +            +
Sbjct: 317 TADPKVMKELDQVIERLDIR-RAQVLVEAIIVETQNGEGLNLGIQWANKLYGGTNFLQKT 375

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            S   +             +     + +++ +  AL   +    LA P++  +    A F
Sbjct: 376 NSIQTNNNSGNPIPMMMAGLTAGFYKGNWDGLFIALATNSNNNILATPSIVTLDNMEAEF 435

Query: 288 TSGGQHLYKTVSSST----GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             G +    T + +T       S++    GV+L   P +     + L I+ EVS      
Sbjct: 436 NVGQEVPVLTSTQTTATDKVYNSISRQSVGVMLKVKPQINKGDSVLLEIRQEVSSVADSS 495

Query: 344 NAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKD 376
           +         +  R  +  V + SG T+V+ GLL  
Sbjct: 496 DVNANNLGSVFNKRVVNNAVLVKSGETVVVGGLLDK 531


>gi|42527064|ref|NP_972162.1| hypothetical protein TDE1556 [Treponema denticola ATCC 35405]
 gi|41817488|gb|AAS12073.1| conserved domain protein [Treponema denticola ATCC 35405]
          Length = 400

 Score =  112 bits (281), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/265 (18%), Positives = 101/265 (38%), Gaps = 7/265 (2%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  T        + +N   +K +  + +  + +  ++  +  V+ +  +      + +
Sbjct: 112 ESIVVTGNPNLIFFRGSNIKREKFLKEMELIDKPKAQIRYQLLVVQYEKSEN--INWAKS 169

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
                      ++F G   +             + F   L+        R LA+ TL  I
Sbjct: 170 LEVKKAKGKPMSEFSGIMSNIFNINFDIVSKFGYQFIAKLNFELAENKARVLADTTLNGI 229

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           +G+   F +     Y   +  +    +         G++L+    V   G I + +  +V
Sbjct: 230 TGEEVRFQNTNTFRYIDKTLDSNGKPLYGSMREITSGLLLNIKGNVSGDGMITMEVNAQV 289

Query: 337 S-EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           S +   GV +G +P    +   T V  PSG  I++ GLL+ +    ++ IP L  IPI G
Sbjct: 290 SKQGSGGVTSGVLPPTSEKIVKTKVRTPSGKPIIIGGLLQVEQNSSEKKIPGLGDIPIAG 349

Query: 396 ALFRNSRFNREETEIFIAATPFLVK 420
             F++   +   TE+ I   P++ +
Sbjct: 350 LAFKDINGSETVTEMVIYIVPYIHR 374


>gi|45504747|gb|AAS66838.1| YsaC [Sodalis glossinidius]
          Length = 500

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 81/235 (34%), Gaps = 23/235 (9%)

Query: 192 GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVL 251
            + Q+ L + I ++ ++ + Q+G   +   +    S  F             + S     
Sbjct: 242 AKQQIQLSLWILDIDKEEVNQLGVDWAARANIGSGSIEF-------------NSSSLSAS 288

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
             + F   + AL      + +A P +       A F +      +     T    +    
Sbjct: 289 TSYQFLAKVSALASRKDAQVVAHPEILTQENIPALFDNNSSFYVQVKGERTAT--LEKIT 346

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD-------MPSYRVRKADTTVELPS 364
           YG ++   P + S  +  + +  ++ +  +     +       +P     +  T   +P 
Sbjct: 347 YGTLISVLPRLSSGSK-EIEMILDIQDGGLMTGDDNAVMQVAELPLVNTTQISTEARVPK 405

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G ++++ G  +D       GIP+L  IP LG LF       ++        P L+
Sbjct: 406 GSSLLVGGYSRDQRVNAGWGIPVLRDIPFLGRLFDYRYKQTKQFVRMFLIQPKLL 460


>gi|289675697|ref|ZP_06496587.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 137

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 49/137 (35%), Positives = 75/137 (54%), Gaps = 4/137 (2%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           A P+L A++GQSASF +GG+      +      S+   ++GV L  TPTV+   RI L++
Sbjct: 1   ARPSLVALNGQSASFLAGGEFPVPVPNGEGNGISIEYKEFGVRLTLTPTVVGRDRILLKV 60

Query: 333 QTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
             EVSE      I +    +P+  +R+ DT++ L  G + V++GL+        +  P L
Sbjct: 61  APEVSELDFSAGITIAGTTVPALNIRRTDTSIALADGESFVVSGLISSSNSGSVDKFPGL 120

Query: 389 SKIPILGALFRNSRFNR 405
             IPILGA FR+S+  R
Sbjct: 121 GDIPILGAFFRSSQIQR 137


>gi|159903356|ref|YP_001550700.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888532|gb|ABX08746.1| Type II secretory pathway, component PulD [Prochlorococcus marinus
           str. MIT 9211]
          Length = 575

 Score =  112 bits (279), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 49/288 (17%), Positives = 92/288 (31%), Gaps = 41/288 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            + Y  S ++K +  L++    QV L V + +V  +    +          +    S + 
Sbjct: 270 GDPYLVSIAEKYLKQLDLRQR-QVALSVKVIDVLLNNTTDMKNAFEYGIGDNYIINSESK 328

Query: 233 DF-----GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS--- 284
                     F       +    L    F     +       + LA PTL     Q    
Sbjct: 329 GLMYMFGNKSFSPTDFSVTDSFSLASRKFMGWFRSKVLTNNAKILANPTLILGESQEEIL 388

Query: 285 ---------------------------ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
                                         +    +   +    +      T   G+   
Sbjct: 389 GGSEVSGSLGLGDSTIGRPWANEGFVKVGTSVVTNYTISSAEDGSTLCEPQTDIAGITFG 448

Query: 318 FTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAG 372
                +   G +   +   +S      + GD  +      R+ DT  + +  G T+VL G
Sbjct: 449 AKVHKIDDNGYVTFSLSPNISAVSETQSIGDCGNISTLSIRRLDTGNIRVRDGDTLVLTG 508

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           ++K+D  +     P+L  IP+ G LFR +   R+++E+ I  TP ++K
Sbjct: 509 VIKEDDTKAITKTPVLGDIPLFGRLFRTNSTVRKKSELIIMVTPKVIK 556


>gi|153848715|ref|ZP_01993991.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
 gi|149744675|gb|EDM56143.1| Flp pilus assembly protein [Vibrio parahaemolyticus AQ3810]
          Length = 132

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 66/131 (50%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++       G+ +S+  ++   L +    + V + DP   D+VV     ++L GK +G  
Sbjct: 2   SVHAATAQSGRVVSVAHHQSTQLVISGKAKKVTLGDPEVLDIVVLRSNELFLIGKKLGTT 61

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS 157
           NV +    G+ +   ++ +  D+  L+  L +F+ D +I V    + VVL G+V + Q+ 
Sbjct: 62  NVSVWDSRGRLIEQFNVEVTHDLNTLKSKLFQFLPDESIEVHSAQEKVVLRGLVSSQQNM 121

Query: 158 QRAVELSETFL 168
             AV+++ETF 
Sbjct: 122 DIAVKIAETFA 132


>gi|197106378|ref|YP_002131755.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
 gi|196479798|gb|ACG79326.1| hypothetical protein PHZ_c2917 [Phenylobacterium zucineum HLK1]
          Length = 612

 Score =  111 bits (278), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/238 (19%), Positives = 70/238 (29%), Gaps = 9/238 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQH-----SITGSSSGPSKSFAADFGGKFVSEGGDF 245
                  +   I           G        +  G+    ++S++        S     
Sbjct: 291 PLPRMAMVDAVILRTDDTRSATNGVNLLKNLSAYVGNGITVTRSWSTGQPATKTSVVTQN 350

Query: 246 SVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
              G          L+ A         LA+PTL A+  Q A F SG              
Sbjct: 351 LGLGSSVGGVLSYSLNIANATEQRAEILAQPTLLALDRQPAQFFSGSNVTIALNGGPGSY 410

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS---EPVIGVNAGDMPSYRVRKADTTVE 361
            SV     GV L  TPT +    + + ++   S   E                     V 
Sbjct: 411 GSVQNQPVGVSLSVTPTFVDDDSMLVSVKAVRSFFEETADSATFVQSVQTSRNMVTANVL 470

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L    T+VL+GL + ++  +    PLL  IP +  LF           + I  TP  V
Sbjct: 471 LRFDQTLVLSGLSEREVTSIDSRTPLLGDIPGVQHLFATKEDRDYTRSVVIMLTPRRV 528


>gi|222100907|ref|YP_002535475.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
 gi|221573297|gb|ACM24109.1| Secretin/TonB, short N-terminal domain precursor [Thermotoga
           neapolitana DSM 4359]
          Length = 380

 Score =  110 bits (276), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 41/206 (19%), Positives = 74/206 (35%), Gaps = 12/206 (5%)

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           L++ G     +  S G + +                 +      +S  + +       + 
Sbjct: 179 LRKWGISWQYSNQSEGENFTINLLE--------KALDIVFNTLDYSVLSHIELSIGDGSA 230

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG 329
           + LA P L   SG S  F++  Q  Y T         V + + G  +   P +L    + 
Sbjct: 231 KLLANPRLRLQSGSSGKFSAKTQRNYITT--ENDKKVVKSVELGTEVEIKPFLLRDNTVS 288

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           L ++   S  +       +P    +  + TV L  G T+ + G+  D    + + +PLL 
Sbjct: 289 LTVKITSSNALDKNEG--LPDTTSQSIEGTVRLKLGETVAIGGIGFDTYTTVTDKVPLLG 346

Query: 390 KIPILGALFRNSRFNREETEIFIAAT 415
            IP+ G LF+     +   EI I   
Sbjct: 347 DIPVFGYLFKKETERKIHKEILILVK 372


>gi|300867368|ref|ZP_07112024.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
 gi|300334619|emb|CBN57192.1| type II and III secretion system protein [Oscillatoria sp. PCC
           6506]
          Length = 810

 Score =  110 bits (275), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 11/184 (5%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--- 310
             F + L A  +    + L +PTL    G++A      Q +    + +T  T +T     
Sbjct: 603 TRFLSQLQAQIQTNNAKILTDPTLIVQEGETAGVNLTEQVITNITTQTTAGTGLTQQTVT 662

Query: 311 ----DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADT-TVEL 362
               + G+ L+     +   G I +RI   V             +   + R   +  + L
Sbjct: 663 AEKGNAGLTLNVEVTRIDDNGFISMRINPTVRAIARTSPLGNNLISLLQERSLSSGLIRL 722

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
             G T++++G++ D  +     IP+L  +PI+GALFR++  + +  E+ +  TP ++   
Sbjct: 723 RDGQTLIVSGIINDTERVTASKIPILGDLPIIGALFRSTSKSNQRAEVIVLVTPQILDDS 782

Query: 423 AMRD 426
               
Sbjct: 783 DRSS 786


>gi|257458871|ref|ZP_05623994.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
 gi|257443859|gb|EEV18979.1| bacterial type II and III secretion system protein [Campylobacter
           gracilis RM3268]
          Length = 389

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/228 (23%), Positives = 83/228 (36%), Gaps = 11/228 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QV  K+TI E   +  K IG   +  G     ++S    F           +      +
Sbjct: 163 EQVNFKLTILETNTNDYKDIGSHLNSLGDVV--TRSDLNYFINLITMPYSAETNVVTTKK 220

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY------KTVSSSTGATSV 307
             F  VL  L++         P L A SG    F+S     Y       T + +    S 
Sbjct: 221 RGFYGVLSLLQQNGVTTIKQSPFLVAKSGAEVYFSSVENVPYLTNTSTYTQNGTATQNSY 280

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ +   P VL    +   +   V + +   N    P    ++  +   L  G  
Sbjct: 281 EYKDVGLKIKIRPVVLQNSNVDFSLDLVVEDLLDTQNTLT-PRTSKKELKSNYSLKRGEL 339

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +VL+G+ KD     + G+PLL  IPIL  LF   +  +  +   I  T
Sbjct: 340 LVLSGINKDVAYSKRNGVPLLKDIPILKYLFSIEQNYKSTS--IITLT 385


>gi|270488174|ref|ZP_06205248.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
 gi|270336678|gb|EFA47455.1| type IV pilus secretin PilQ [Yersinia pestis KIM D27]
          Length = 422

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 63/364 (17%), Positives = 130/364 (35%), Gaps = 19/364 (5%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP-TKADVVVHSPR 85
           P   E   A +++    +   +++++     +   + + + +V    P  +A  ++    
Sbjct: 63  PVTLEFQDAPVSVILQALADYRQLNLITTTGVGGNLSLRLIEV----PWEQALAIILRMG 118

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV 145
              L  +  G   ++    + ++            A   +TL    A++    + +    
Sbjct: 119 R--LKAEREGTVMMVFTEQEIQERQQRTKQQAAPEALANLTLALQYANAEQVADSLDP-- 174

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
            L G + +   S  A + + T L +      A   +  +   L +    QV L   I  +
Sbjct: 175 -LQGGLLSPLGSVVADKRTNTLLIRDTPASLALLKNWLIEMDLPL---QQVQLSAHIVTI 230

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK---GVLDRFSFETVLHA 262
             + L+++G +    G   G +     DF           SV      +     E  L A
Sbjct: 231 SSEDLQELGVRWG-MGEGKGNTALRINDFNVNLPLPNSAASVGFHVARIGGRLLELELSA 289

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
           LE+   +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +
Sbjct: 290 LEQENQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKI 349

Query: 323 LSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           L  G+I L ++   + P I +     +M     ++  T V +  G TIVL G+ +    +
Sbjct: 350 LRNGKIILDLKISQNMPGITIKRGESEMLLIDKQEIKTQVTVNDGETIVLGGIFQQKNAR 409

Query: 381 LKEG 384
           +   
Sbjct: 410 VLIK 413


>gi|304415540|ref|ZP_07396167.1| type III secretion apparatus protein [Candidatus Regiella
           insecticola LSR1]
 gi|304282604|gb|EFL91140.1| type III secretion apparatus protein [Candidatus Regiella
           insecticola LSR1]
          Length = 360

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 72/235 (30%), Gaps = 19/235 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + L V I ++ +     +           G + +   +  GKF +          LD   
Sbjct: 92  IELSVWIIDLEKTA---LXXXXXXXXXXLGVNFNVRININGKFGASFNGGG-ASTLDGSR 147

Query: 256 FETVLHALERATAIRTLAEPT-LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           F   + AL +      ++ P  +       A F +                ++ +  YG 
Sbjct: 148 FIASIMALSQQNKANIVSRPDCVLTQENIPAIFDNNRAFYS--EVKGDRVATLESVTYGT 205

Query: 315 VLHF---------TPTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVEL 362
            +            P      +I + +  E    +   +      +P     K  T   +
Sbjct: 206 SVSVLXXXXXXXXXPRFAEQSQIEMMLNIEDGNEIAQNDNEIKTSLPKVGRTKISTVARV 265

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           P G ++++ G  +D     +  IP L  +P +G LFR  +     T       P 
Sbjct: 266 PKGKSLLIGGYTRDSSNNTEAKIPGLGSLPWVGGLFRYRQSASANTVRVFLIQPR 320


>gi|37525675|ref|NP_929019.1| hypothetical protein plu1738 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36785103|emb|CAE14031.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 534

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 46/241 (19%), Positives = 79/241 (32%), Gaps = 19/241 (7%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L V I  +  D   Q G   S+   S+    S  +                      
Sbjct: 298 QVVLNVKILNLTFDRADQYGVDWSLAYKSARIGLSNESGNSVIDDGGVSTNIHILKGPFS 357

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307
               ++ AL     +  + +P++T ++ Q+       Q  Y    S+T    V       
Sbjct: 358 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 417

Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-------VIGVNAGDMPSYRVRKADTT 359
             T   G  +   P  ++  +I L+    +S+                +P+  +R     
Sbjct: 418 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTIDLRAFSQK 477

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L SG T+VL+G  +      + G   L   P    L  + +  R    I +  TP +V
Sbjct: 478 VRLHSGETLVLSGFEQQSDTSDRSG---LGS-PDNQLLGGSRQGKRNHNVIVVMITPIVV 533

Query: 420 K 420
            
Sbjct: 534 D 534


>gi|294507285|ref|YP_003571343.1| general secretion pathway protein D [Precursor] [Salinibacter ruber
           M8]
 gi|294343613|emb|CBH24391.1| Probable general secretion pathway protein D [Precursor]
           [Salinibacter ruber M8]
          Length = 473

 Score =  109 bits (273), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
             F S          +    F   L+ +E+    RT+A P +T  SG+      G     
Sbjct: 221 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 280

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344
           +T   + G T       G+++  TPT+LS              I L +  E S      +
Sbjct: 281 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 339

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400
               P     +A T + L       + GL+       + G+P+L  +P     L  +F +
Sbjct: 340 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 396

Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
              N  + E+ I     +V P+  R 
Sbjct: 397 ETTNVTKQELLIVLRAEIVDPLRARA 422


>gi|83816469|ref|YP_445404.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
 gi|83757863|gb|ABC45976.1| general (Type II) secretion pathway (GSP) D protein, putative
           [Salinibacter ruber DSM 13855]
          Length = 426

 Score =  109 bits (272), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/206 (21%), Positives = 73/206 (35%), Gaps = 19/206 (9%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
             F S          +    F   L+ +E+    RT+A P +T  SG+      G     
Sbjct: 174 NLFESVDNILQAPDQISLSQFRRFLNLVEQDNVGRTVANPQVTVQSGEQGEIQIGQDVPI 233

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-----------GRIGLRIQTEVSEPVIGVN 344
           +T   + G T       G+++  TPT+LS              I L +  E S      +
Sbjct: 234 QTTDFA-GNTVTEFFSTGIIIDVTPTLLSQPVADTSGAPVLDFIHLNVDVEDSNSQPSGS 292

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP----ILGALFRN 400
               P     +A T + L       + GL+       + G+P+L  +P     L  +F +
Sbjct: 293 G---PIINRNQASTQILLLDNEATAIGGLISTQKTTRRSGVPILKDLPGWVFGLRYIFGS 349

Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
              N  + E+ I     +V P+  R 
Sbjct: 350 ETTNVTKQELLIVLRAEIVDPLRARA 375


>gi|301165542|emb|CBW25113.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ]
          Length = 493

 Score =  109 bits (271), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/428 (13%), Positives = 135/428 (31%), Gaps = 76/428 (17%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVII-----LQVPVDVQDVLV---SDPTKADVV 80
                + V+      +G  + + IG+    +     + VP D+  V+V     P    +V
Sbjct: 98  TATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVIVVLGGYPDVVQLV 157

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
             SP+T  +  +                               +   +  + D  + V +
Sbjct: 158 ELSPQTQRVIAR----------------------------NMQKEIQKSNMPD--VTVRV 187

Query: 141 VSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK------VMNLLNI---- 190
            +   +L G+V +  D  RA +++  ++    +N    + + K      + N +++    
Sbjct: 188 ANGLFMLEGVVSSDVDKTRAEQIAAVYVPDMIQNLARRTEAVKAAEKDIIQNFISVNAKK 247

Query: 191 ---AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
                   + +     E+ +D  K  GF+        G + +      G   S       
Sbjct: 248 KPAPIPKMIKISAQFVELTKDYNKIFGFKWEPVLGGGGGTINIGKGADGGVTSSSSGTLA 307

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +    +    L + + A   R +    +      ++      +  +     +      
Sbjct: 308 GTI---SNLFPKLASAKSAGYARVIQSGVIITKDKIASKIVKRSEKPF--AIGTGEFVRT 362

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
                G  L  TPT+L   ++ L +   VS      N GD P        T + + S  +
Sbjct: 363 EKATAGFDLSITPTILPQEKVDLSMGLTVS-----ANVGDPPETTSNTIQTALVVKSKES 417

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPI----------LGALFRNSRFNREETEIFIAATPF 417
            V+ G++ +      +  P     P           L +  ++  +   +++  +  TP 
Sbjct: 418 AVVGGVVVNKSSTDFDRNP-----PGGVDEVEDGSKLFSFVKSKAYLTNKSQFVVFVTPE 472

Query: 418 LVKPVAMR 425
           +++  +  
Sbjct: 473 IIESASTG 480



 Score = 44.3 bits (103), Expect = 0.040,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 61/164 (37%), Gaps = 6/164 (3%)

Query: 46  KGKKISIGLNKVIILQVP-VDVQDVLVSDPTKAD-VVVHSPRTMYLFGKNVGQANVILIG 103
             KK+ + L    + ++       V V + T  + V++   R +   G   GQ +V++  
Sbjct: 25  PEKKVEVVLGIDHVEKLDFAPSTKVQVGNDTILNHVIIPQKREITFKGLKPGQTSVMVRN 84

Query: 104 HDGKQMLNLDI-LIERDIAHLEMTLRRFIAD-SNIRVEMVSDTVVLHGMVRTIQDSQRAV 161
             G       + +   D + +   L+ F+ D   + + +  + V + G +    D  R +
Sbjct: 85  TVGDIKAKFLVNITATDQSKVVQELKEFLGDVEGLEIGIKGNKVYVGGEIVVPSDIGRVI 144

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLN--IAGEDQVTLKVTIA 203
            +   +       + +  + + +   +   I   +   + V +A
Sbjct: 145 VVLGGYPDVVQLVELSPQTQRVIARNMQKEIQKSNMPDVTVRVA 188


>gi|157163911|ref|YP_001467431.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801005|gb|EAT98349.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 44/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QVT K+TI E     +K +G      G     +    A +     S     S     + 
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNND 212

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
            +F  +L+ L+     + ++ P LTA +     F+S     Y    +           S 
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ ++  P +LS   I   +   + + +   ++   P    ++  ++  L  G  
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSFT-PIVSKKELKSSYSLKRGDV 330

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +VL+G+ K    + + G+P+L  I +L  LF   + +   + + +  
Sbjct: 331 LVLSGINKKTNAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377


>gi|331646883|ref|ZP_08347982.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
           [Escherichia coli M605]
 gi|331044200|gb|EGI16331.1| outer membrane lipoprotein BfpB (Bundle-forming pilus B)
           [Escherichia coli M605]
          Length = 563

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 89/256 (34%), Gaps = 21/256 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  +  +N   E QVT+ V +  V       +    S      G      +         
Sbjct: 304 ENYIKKINNELEQQVTINVAVYSVEVTDTSNLALSLSGVLKQRGHELGALSSSTFAVGGL 363

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               +        + E +L AL++A  +  +   ++T +SGQ      GG   Y +   +
Sbjct: 364 PTLTAYFNGDGSENNEALLSALDKAGKVSIVTSASVTTMSGQPTPLQVGGNRTYVSQIGT 423

Query: 302 -------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA--------- 345
                    + S ++   G  ++  P VL  G++ L+    +S      N          
Sbjct: 424 IMSSVSTQSSVSTSSISTGFSMNILPRVLDNGQVMLQYGINISSLAGTHNGFDEVTAAGT 483

Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P+ + R    +  L +G T+VLAG  +   +    GI      P    L      +
Sbjct: 484 TIQLPNIQQRSFIQSSLLQNGNTLVLAGYEQQRNETSDSGI---GD-PSFKLLGGARAGS 539

Query: 405 REETEIFIAATPFLVK 420
             +T I I  TP +++
Sbjct: 540 HAKTLIVICITPRVLQ 555


>gi|270637582|ref|ZP_06222100.1| competence protein E [Haemophilus influenzae HK1212]
 gi|270317386|gb|EFA28906.1| competence protein E [Haemophilus influenzae HK1212]
          Length = 90

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 38/71 (53%)

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +  ++ +T V    G TIVL G+  D I + ++ +PLL  IP++  LF       ++ E+
Sbjct: 3   FLKQEINTQVFAKDGETIVLGGVFHDTITKSEDKVPLLGDIPVIKRLFSKESERHQKREL 62

Query: 411 FIAATPFLVKP 421
            I  TP ++K 
Sbjct: 63  VIFVTPHILKA 73


>gi|119510022|ref|ZP_01629163.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
 gi|119465346|gb|EAW46242.1| general secretion pathway protein D [Nodularia spumigena CCY9414]
          Length = 826

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 30/188 (15%), Positives = 67/188 (35%), Gaps = 16/188 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT------ 309
               L A  +    + L +PTL    GQ+A      + +   +   T     ++      
Sbjct: 615 LLASLQAQIQNGNAKILTDPTLIVQEGQTADVRLTQEVVGNIIREITRGDGTSSESVTAD 674

Query: 310 -HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADT-T 359
             + G+ L      +          +               G  +  +     R   + T
Sbjct: 675 KVNVGLTLAVKVDRIDDNGFVSLSVSPSVSSPQAPAEINLGGSGSQRIFLVSTRSLTSGT 734

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + L  G T++L+G++++  +     +P+L  +P++G+LFR +    +  E+ +  TP ++
Sbjct: 735 IRLRDGQTLILSGIIQESDRTSVSKLPILGDLPLIGSLFRRTNRQNQRQEVIVLLTPQIM 794

Query: 420 KPVAMRDL 427
                   
Sbjct: 795 DDSENSAY 802


>gi|241765871|ref|ZP_04763805.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
           2AN]
 gi|241364195|gb|EER59385.1| pilus (MSHA type) biogenesis protein MshL [Acidovorax delafieldii
           2AN]
          Length = 599

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 43/283 (15%)

Query: 180 SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFG 235
           + +K++  ++     QV ++  + +V+     + G   +   S        +        
Sbjct: 317 AVEKMLAQVHKVLGKQVYVEAQLIDVQLSDNFEFGVDWTTLRSRLAAGFGSSPMQLGGST 376

Query: 236 GKFVSEGGDF------------------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
               + GG +                  ++       ++  V++AL     ++ L+ P +
Sbjct: 377 ATLPNAGGGYPGRAISIPAALIGSVAGPALGVSYQGSNYGIVINALRSFGNLKVLSNPNV 436

Query: 278 TAISGQSASFTS------------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              +G  A  +                      S+++ +    T   GV++   P V   
Sbjct: 437 QVRNGTPALLSVGTSSRYVSQSASTQTVPGGGASTTSSSVQTDTVFSGVMVGVLPMVRDD 496

Query: 326 GRIGLRIQTEVSEPVI---------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           GRI L +    S+            G N   +P    +   TT+ +  G  +V+ GL+  
Sbjct: 497 GRIELLLNPMQSDVDPASLQLVAVGGDNLVSLPKVSYKGLTTTLNVGDGDVVVVGGLIDQ 556

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                  G P +S +P+LG LF N        E+ I     ++
Sbjct: 557 RTSNNDRGAPGVSDVPLLGKLFGNENKVHGSRELVIVLRARVL 599


>gi|157163960|ref|YP_001466804.1| type II and III secretion system protein [Campylobacter concisus
           13826]
 gi|112801256|gb|EAT98600.1| bacterial type II and III secretion system protein [Campylobacter
           concisus 13826]
          Length = 380

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/227 (19%), Positives = 88/227 (38%), Gaps = 10/227 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           +QVT K+TI E     +K +G      G     +    A +     S     S     D 
Sbjct: 155 EQVTFKLTITETNLKDIKDLGTNLQ--GLLKPLNHGDLAYYINLITSPYITNSNVIKNDD 212

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS------TGATSV 307
            +F  +L+ L+     + ++ P LTA +     F+S     Y    +           S 
Sbjct: 213 SAFFGILNFLDTNGITKIISSPVLTAKNHTEVYFSSVQNIPYLVSKTDISNVNYQKTDSY 272

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ ++  P +LS   I   +   + + +   ++   P    ++  ++  L  G  
Sbjct: 273 EYKDIGLKINLKPIILSD-HIDFDLHLILEDILSQSSSLT-PIVSKKELKSSYSLKRGDV 330

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           +VL+G+ K    + + G+P+L  I +L  LF   + +   + + +  
Sbjct: 331 LVLSGINKKTTAKQRNGVPVLKDIWLLKYLFSVEQDSEINSVLTLTI 377


>gi|268316135|ref|YP_003289854.1| type II and III secretion system protein [Rhodothermus marinus DSM
           4252]
 gi|262333669|gb|ACY47466.1| type II and III secretion system protein [Rhodothermus marinus DSM
           4252]
          Length = 453

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/328 (14%), Positives = 94/328 (28%), Gaps = 42/328 (12%)

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           ++A E +E  +        A +     +    +   + + +   +  V     + IG   
Sbjct: 119 EKAPEKTEVVIGPRRATGEAGAVQAGAVLPATVDTRE-IQINAILFSVNLTKARDIGINW 177

Query: 218 SITGSSSGPSKSFAADFGGK--------------------FVSEGGDFSVKGVLDRFSFE 257
                 +  + +      G                     F            +      
Sbjct: 178 DQFFGLTTGTGTGTGGTTGGGTSGTGGQNNVEFYLKTEDLFDPLAPLIEAPNRISFRQLT 237

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
             L  LE      T+A P +T  SG+      G     +      G T       G+++ 
Sbjct: 238 NFLRFLETEGIGETVASPQITVQSGEQGRIQIGSDVPIQ-TRDFAGNTITQFVSTGIIID 296

Query: 318 FTPTVLSP-----------GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            TPT+L               + L +  E S                  ADT V L  G 
Sbjct: 297 VTPTLLVEPAADTAGAPLIEFVHLDVMVENSSATPSAAGL---IIDRNTADTQVLLLDGE 353

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPI----LGALFRNSRFNREETEIFIAATPFLVKPV 422
             ++ GL        ++GIP L  +P     L  +F  ++    ++E+ I     ++ P+
Sbjct: 354 QTIIGGLYSTRESISRKGIPFLKDLPWWFFGLRYIFGRTQRTITQSELLIVLQVKVLDPL 413

Query: 423 AMRDLSRPDDHYSVEDDAKAFFFNRVNK 450
             R     + +       +     R+ +
Sbjct: 414 TARASRPLERNLLERSRRE--LMERLER 439


>gi|170738260|ref|YP_001779520.1| type IVB pilus formation outer membrane protein [Burkholderia
           cenocepacia MC0-3]
 gi|169820448|gb|ACA95030.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia cenocepacia MC0-3]
          Length = 559

 Score =  108 bits (269), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 84/273 (30%), Gaps = 23/273 (8%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSI 219
           +  +  + S           +V   +         QV + VT+  V        G     
Sbjct: 285 VVSSPATGSITVTDTPDVLDRVGQFMEAQNRSLSKQVLIDVTVLSVDLSDDDSYGINWRA 344

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE--TVLHALERATAIRTLAEPTL 277
              + G S S A  F     +     +     +  +     ++ AL R   +R     ++
Sbjct: 345 VYQALGTSFSLANTFSTTATNPVSFTAQVITPNSRASGTLAMISALSRQGKVRRKTSASI 404

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 405 TTLNDQPVPVQVATQQGYLASVSTTNTANVGSQTALTPGTVTTGFNMTLLPHVLDNGTVL 464

Query: 330 LRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           L+  T +S          G      P    R     V + SG T+VL+G    +    K 
Sbjct: 465 LQFYTNISALLELKTIESGGQKIQTPQIDTRNFLQRVSMKSGQTLVLSGYEASNDNLTKS 524

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           GI      P   A        R+  EI I  TP
Sbjct: 525 GI----GTPNNYAFGGGYDGARDRQEIVILITP 553


>gi|78045321|ref|YP_361571.1| putative PilN-like type II and III secretion system protein
           [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78033825|emb|CAJ19824.1| putative PilN-like Bacterial type II and III secretion system
           protein [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 578

 Score =  108 bits (269), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 92/277 (33%), Gaps = 22/277 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
              ++ +  + +           ++ ++L   N     QVTL   +  +  +   ++G  
Sbjct: 298 IGRVALSPSTGAVTVTDTPDVLDRIGSMLERENTTLTKQVTLHAKVLSLTLNDANEVGVN 357

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
             +   S      F   F     +     SV           ++ AL     + T+  P+
Sbjct: 358 WDVVYRSLSRQFEFTTPFQPASSAGTLGASVINTGKFAGTNVIVSALSTLGTVNTITSPS 417

Query: 277 LTAISGQSASFTSGG--------QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR- 327
           L  ++ + A              Q      + + G  +      G  +   P +L+    
Sbjct: 418 LKTLNLRPAPIQIARQIGYIQSAQISQTEGAGTLGGLTPGFVTVGFNMTVVPRLLAQNEE 477

Query: 328 ------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                 I +    E+     G    +MP    R  ++ V L +G T++L G  +++    
Sbjct: 478 MILQYSINISALNELRSEEAGGTKIEMPDIDTRNFNSEVRLHAGETLILHGFEQENHSSN 537

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + G+      P    L  ++R  R+ T I I  TP +
Sbjct: 538 RRGM---GS-PFAWMLGGSARGQRQRTAIVILITPEV 570


>gi|254468950|ref|ZP_05082356.1| Bacterial type II and III secretion system protein [beta
           proteobacterium KB13]
 gi|207087760|gb|EDZ65043.1| Bacterial type II and III secretion system protein [beta
           proteobacterium KB13]
          Length = 719

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 99/298 (33%), Gaps = 32/298 (10%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAEVRRD 208
                +  A+   +      G     +    +++    +  +    Q  ++  I EV  D
Sbjct: 410 ANDLQADSALGCVDFVADDFGIVASGSILDIQLVEKFLVDQDQPVKQAMIETFILEVNSD 469

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGG------------KFVSEGGDFSVKGVLDRFSF 256
              ++  + +    S+  S++      G               +EGG  +   +  R   
Sbjct: 470 WKNELESRFTSNTMSTNSSEAAGDGGSGLYSFTAGLLDFASATAEGGITASTRLGSRNQI 529

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------SVTT 309
             +++ +E  +  + ++ P +    G+            +  +++T +         +  
Sbjct: 530 SALVNMIETNSLGKKISNPVILVRDGEEGVVDKTRTFRAQRSTTTTNSATTNTSNNQIDE 589

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +D  + L  TP +     +       V E     +     +       T +++  G  ++
Sbjct: 590 YDAPLKLTVTPNINKHNDVIDLDFNFVEETYDSASPTA--ASTSNNITTKLKIEPGEVVM 647

Query: 370 LAGLLKDDIQQLKEGIPLLSKI-------PILGALFRNSRFNREE-TEIFIAATPFLV 419
           +AGL +       +G+P +SK+       P++  L        +  TE+ +   P ++
Sbjct: 648 MAGLFQQTQNNTTQGLPFVSKLGFSKLLSPLVALLGGGEVRRTDTGTELLVFINPTVI 705


>gi|218711163|ref|YP_002418783.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
 gi|218349946|emb|CAQ87357.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
          Length = 539

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 39/242 (16%), Positives = 81/242 (33%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F G                
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTGAASDAITGGVSIVDGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  + + +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|330951304|gb|EGH51564.1| type IV pilus biogenesis protein PilQ [Pseudomonas syringae Cit 7]
          Length = 106

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 44/96 (45%)

Query: 323 LSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               RI + ++    EP        +P  +  + +  V +  G TIV+ G+  +   ++ 
Sbjct: 1   TPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLISDGETIVIGGVFSNTQSKVV 60

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + +P L  +P LG LFR    +  ++E+ +  TP +
Sbjct: 61  DKVPFLGDVPYLGRLFRRDVVSESKSELLVFLTPRI 96


>gi|320106632|ref|YP_004182222.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319925153|gb|ADV82228.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 819

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 48/190 (25%), Positives = 75/190 (39%), Gaps = 16/190 (8%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              +    +   +    L      +  R L  P L +  GQ A    G +    T S ++
Sbjct: 410 NGTNFAVSIGSAALAATL----SDSDTRVLQNPRLRSTDGQRAQLKIGQRIPVATGSYNS 465

Query: 303 G----------ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE--PVIGVNAGDMPS 350
           G           T     D GV +  TPTV     I L+++ EVS       ++    P 
Sbjct: 466 GVSTGVASVGVQTQFQYIDIGVQIDLTPTVHQNHEISLKMKIEVSTHANDETISGVVEPV 525

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
              R ++  ++L  G   +L+G+L         G P LS+IP+LG +F N   +R  TEI
Sbjct: 526 IGQRISEQVIQLKEGEPSILSGILTKTESDSLGGTPGLSQIPLLGRIFSNKTRDRASTEI 585

Query: 411 FIAATPFLVK 420
                P +V+
Sbjct: 586 VFVLVPHIVR 595


>gi|73853185|ref|YP_308681.1| pillus assembly protein [Escherichia coli]
 gi|33414103|gb|AAL18829.2| Pillus assembly protein [Escherichia coli]
          Length = 539

 Score =  107 bits (267), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  + + +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|331680850|ref|ZP_08381490.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli H299]
 gi|331081838|gb|EGI52996.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli H299]
          Length = 539

 Score =  107 bits (267), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 80/242 (33%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  + + +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|124024476|ref|YP_001018783.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
 gi|123964762|gb|ABM79518.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9303]
          Length = 849

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 47/268 (17%), Positives = 92/268 (34%), Gaps = 29/268 (10%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD----RFSFET 258
            +       Q     S  G +   + + + +         G ++ +          +F  
Sbjct: 578 LDATSSSDSQNQTSTSNNGQNQTSASNNSQNQTSTSTQNRGTYNRRRNPGLGYPNQAFYD 637

Query: 259 VLHALERATAIRTLAEPTLT------AISGQ-------SASFTSGGQHLYKTVSSSTGAT 305
            L A   +T  + LA PTL        I+G+        A    G + +     ++    
Sbjct: 638 FLRAQIESTNTKVLASPTLILSESNETIAGEIGRKNANEAYVRLGDKVVTAFEITTDQNG 697

Query: 306 SV----TTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKAD 357
           +V    T    G+ L      +   G +   ++  +S  V   + G+         R  +
Sbjct: 698 NVYCEPTFETAGLSLGAKVSKIDDNGFVTFSLEPNLSAKVGEQDQGECGLISTVNERLLE 757

Query: 358 T-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
           T  V +  G T++L G++ D   Q+    P+L  IP++G  FR++   + ++E+ I  TP
Sbjct: 758 TGAVRVRDGQTLILTGVISDRDIQVVTKWPILGDIPVIGQFFRSTNGTKSKSELVIMVTP 817

Query: 417 FLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
            ++              Y     A    
Sbjct: 818 RIIDDEQGGTYGY---GYRPSTRAARNL 842


>gi|254430712|ref|ZP_05044415.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
 gi|197625165|gb|EDY37724.1| general secretion pathway protein D [Cyanobium sp. PCC 7001]
          Length = 849

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 44/288 (15%), Positives = 82/288 (28%), Gaps = 52/288 (18%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           V R + + +G      G+ S    S    F  +        +        +F   + A  
Sbjct: 566 VERTVQRILGRN----GTVSRTRSSNNGGFSNRLDVASTPGNPGNNYAEDTFYDFVRAQI 621

Query: 265 RATAIRTLAEPTLTAISG--------------------------------------QSAS 286
            + + + LA PTL                                           +  +
Sbjct: 622 TSGSTKLLASPTLILQENAAELRGAGITGSTDSPGGLDEYSPDSPIGRRRANEGVVRVGT 681

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVN- 344
                  +                  G+VL      +   G +   +   VS        
Sbjct: 682 NVVTNYQVTTPEGGGNIVCDPEVSTAGLVLGARIEKIDDNGFVTFALSPSVSAITGQEQA 741

Query: 345 ----AGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
                 ++    VR+ DT  V +  G T++L G++ D  + +    P+L  IP++G  FR
Sbjct: 742 PEGCGSNLNILSVRRLDTGAVRVRDGQTLILTGVISDFDRSVVSKWPILGDIPLIGQFFR 801

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNR 447
           ++   +E+ E+ I  TP ++              Y         F   
Sbjct: 802 STSNQKEKRELVIMVTPRIINDEQGGAFGY---GYQPGTRQVRDFLGT 846


>gi|319774909|ref|YP_004134178.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
 gi|317115257|gb|ADU97746.1| hypothetical protein Theam_1790 [Thermovibrio ammonificans HB-1]
          Length = 570

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/259 (18%), Positives = 83/259 (32%), Gaps = 20/259 (7%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                  +  +KV+N L  A   QV  +V I EV      Q G   S    S     +  
Sbjct: 313 TDTPENIAKVEKVINSLIKAVSQQVQFRVAIYEVTYSDEFQSGVDWSAVFGSQNLQITTG 372

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
              G  F   G             F  ++  L R   ++T+ +  +  +SG++ +   G 
Sbjct: 373 QSTGYVFDLSG----YFKAGKSNPFNYLVKLLSRYGKVKTIYDNYVRTLSGETVAIVPGE 428

Query: 292 QHLYKTVSSSTGATSVTTHD---------YGVVLHFTPTVLSPGR------IGLRIQTEV 336
            + +     +                    G+ L+ TP     G       +  R    +
Sbjct: 429 TYRFLESIETQSQADTKLVTQVPVFKELSLGIQLYITPLKRDDGTTQYELDVTNRFIKSL 488

Query: 337 SEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                  N   +P    R     T  +P     V+ G+ +  +   + G+P L  IP+ G
Sbjct: 489 KTYTFDNNTYTVPELIGRTDISLTTVIPKHHFEVITGIKQYKLDSSQSGVPGLMDIPVAG 548

Query: 396 ALFRNSRFNREETEIFIAA 414
            LF+        +E  +A 
Sbjct: 549 ELFKGRSRKATLSEYIVAI 567


>gi|170077129|ref|YP_001733767.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
 gi|169884798|gb|ACA98511.1| general secretion pathway protein D [Synechococcus sp. PCC 7002]
          Length = 788

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 48/220 (21%), Positives = 79/220 (35%), Gaps = 24/220 (10%)

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLAEPTLTAISGQ 283
           G   +           EG    V       +F   L A L R T  + +A+PTL     +
Sbjct: 540 GVGPNNTPILDLVPFEEGIGTIVPSTTSGTNFIGSLVAGLLRNTTSKIVADPTLIIQENE 599

Query: 284 SASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP----------------TVLSPGR 327
           +       Q +      S    S + +     ++  P                 +   G 
Sbjct: 600 TGELRVTEQIINSVQIVSGSVNSDSDNGTNNAVNVLPEPVLAEVGLFVPITVENIDDNGF 659

Query: 328 IGLRIQTEVSEPVIGV-----NAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDDIQQ 380
           I L I  EVS P   V      + ++ + + +      +V L    T++LAG + +    
Sbjct: 660 ITLNITPEVSAPSEEVVFEAGTSRNVLTLKRQSILNSGSVRLRDDQTLILAGAIDERDIT 719

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +P+L  IPILG+LFR+S    E  E+    TP ++ 
Sbjct: 720 TTSKVPILGDIPILGSLFRSSSRTNERRELLFIITPQVID 759


>gi|304412101|ref|ZP_07393711.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|307305996|ref|ZP_07585742.1| type II and III secretion system protein [Shewanella baltica BA175]
 gi|304349651|gb|EFM14059.1| type II and III secretion system protein [Shewanella baltica OS183]
 gi|306911489|gb|EFN41915.1| type II and III secretion system protein [Shewanella baltica BA175]
          Length = 487

 Score =  107 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 52/286 (18%), Positives = 101/286 (35%), Gaps = 10/286 (3%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---N 186
               +   +    + +     +   +  +RA +L      +    +   +S  +V+   N
Sbjct: 192 IFPGAQSLISSAIEKIGQFENISDGEMVKRAYKLKLNQNDKQQLEEDEFTSKVQVLPGSN 251

Query: 187 LLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-D 244
            L + G  +++ L   IA +     +Q+ F   +   S   +++   +      S G  D
Sbjct: 252 ALLVRGTPEEIQLAKRIATLIDVKRQQLLFFLRVYDVSVERTEALGVNSSWLNGSRGLYD 311

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
             V    D   F     AL      R + E  L  +  Q   F          V  S   
Sbjct: 312 IIVPPFTDTVDFFKNFQALYTNNMARGVYETNLLVLENQQGHFGKKET--ATVVLISDKQ 369

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQT---EVSEPVIGVNAGDMPSYRVRKADTTVE 361
            S    +    L+ T  +L  G++  +       +S+      A   P    +   + V 
Sbjct: 370 VSTQKIEAENSLYVTGRLLPSGKVQAKFSYIEESLSDDKAEGGATQAPRVNSQSLTSEVY 429

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  G T++L G        ++ G+P+LS IP LG LF++ +  + +
Sbjct: 430 IEPGQTVILGGFDNTVTDSVESGVPILSSIPWLGELFKSKKETKRK 475


>gi|330950830|gb|EGH51090.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae Cit 7]
          Length = 314

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 6/153 (3%)

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---R 327
            +  P++  +  Q A               S    ++     G  L  TP  L      +
Sbjct: 1   MIGNPSILTLENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQ 58

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           + L +  E  +  I       PS R     T   +   G++V+ G    +       +PL
Sbjct: 59  VQLIVDIEDGQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKVHKVPL 118

Query: 388 LSKIPILGA-LFRNSRFNREETEIFIAATPFLV 419
           L  IP +G  LF++      + E     TP L+
Sbjct: 119 LGDIPYIGKLLFQSRSRELSQRERLFILTPRLI 151


>gi|229515151|ref|ZP_04404611.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
 gi|71480608|gb|AAZ32230.1| VcsC2 [Vibrio cholerae non-O1/non-O139]
 gi|229347856|gb|EEO12815.1| hypothetical protein VCB_002808 [Vibrio cholerae TMA 21]
          Length = 485

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 54/341 (15%), Positives = 112/341 (32%), Gaps = 47/341 (13%)

Query: 69  VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + V D   A  D  V+ P    L    +   N+    +   + L       +     +  
Sbjct: 177 ISVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L      + ++    S+ +++ G     ++ + A  ++                      
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++    Q+   + + ++  +  + +G        S G        F            
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +   F     AL      R++ E  L A+  Q   F          +  S     
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
               +    L+ T  +L  G++  RIQ          ++   P    +  ++ V +  G 
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEEGDSNRPPRVSSQSLNSEVYIQPGQ 431

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           T++L G      QQ + G+P+LS IP+LG LF+ +  ++ +
Sbjct: 432 TVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 472


>gi|237750361|ref|ZP_04580841.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
 gi|229373891|gb|EEO24282.1| conserved hypothetical protein [Helicobacter bilis ATCC 43879]
          Length = 756

 Score =  106 bits (265), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 40/244 (16%), Positives = 85/244 (34%), Gaps = 20/244 (8%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            + +  L      QV + V I  +       +G       S   P++S            
Sbjct: 508 SQFLQDLEQKMNMQVAIDVEILSLIHFQTNNVGIDWQQIFSILNPTQSSL-----NIAFG 562

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA----------SFTSGG 291
           GG   +    +    +++ + L     +R+L+ P + A++ Q A          +     
Sbjct: 563 GGGAMLTLGNNNADLQSIFNLLRTYGDLRSLSNPKIMALNNQPALISVGSVLRYTQNLVY 622

Query: 292 QHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRI-GLRIQTEVSEPVIGVNAGDM-- 348
           Q      +    +T   +   G++L  TP++     I  +      ++     NA +   
Sbjct: 623 QSNNTNTTIQNTSTQYPSVFAGILLDITPSISHDSVILRINPSITKTKDPDMENAAEALK 682

Query: 349 --PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P+    +  + V+L  G  +++ GLL + +Q   + IP + +   L  +F        
Sbjct: 683 APPNLSTNQLSSIVKLKDGERVIIGGLLNNVVQNTSQAIPKIGENKWLKNIFGKQSRTNR 742

Query: 407 ETEI 410
             E+
Sbjct: 743 SEEL 746


>gi|253990257|ref|YP_003041613.1| piln (lipoprotein) [Photorhabdus asymbiotica subsp. asymbiotica
           ATCC 43949]
 gi|253781707|emb|CAQ84870.1| piln (lipoprotein) [Photorhabdus asymbiotica]
          Length = 533

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 78/241 (32%), Gaps = 20/241 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV L V I  +  D   Q G   S+   S+                   +  +       
Sbjct: 298 QVVLNVKILNLMFDRADQYGVDWSLAYKSAHIGVGGEGSSAVDGSGISTNIHIL-KGPFS 356

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------- 307
               ++ AL     +  + +P++T ++ Q+       Q  Y    S+T    V       
Sbjct: 357 DSTLLIKALSAQGKVSIVTQPSVTTLNLQAVPMQVATQTGYVASISNTSTPQVGTSVGIE 416

Query: 308 -TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-------IGVNAGDMPSYRVRKADTT 359
             T   G  +   P  ++  +I L+    +S+                +P+  +R     
Sbjct: 417 PATVTTGFNMLMLPYAMADKQILLQYNISLSDLKRLEKFGKEETGQVQLPTVDLRAFSQK 476

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           V L SG T+VL+G  +      + G   L   P    L  +    R    I +  TP +V
Sbjct: 477 VRLHSGETLVLSGFEQQSDASDRSG---LGS-PDNQFLGGSREGKRNHNVIVVMITPIVV 532

Query: 420 K 420
            
Sbjct: 533 D 533


>gi|1314252|gb|AAC44041.1| BfpB [Escherichia coli]
          Length = 552

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 89/266 (33%), Gaps = 22/266 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +N LN   E QVT+ V I  V       +        + +G      +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEAFVNDNGGVLGSVS 344

Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  S    F          S + +L+ L     +  +   ++T +SGQ      G 
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404

Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
              Y +          ++   S +T   G +++  P V   G I L+    +SE V   N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464

Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +P+        +  L +G T+VLAG  K   + + +G+   +   +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G        +   T   I  TP ++ 
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546


>gi|88809802|ref|ZP_01125308.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
 gi|88786186|gb|EAR17347.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 7805]
          Length = 765

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 32/207 (15%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F   L A  ++++ + LA PTL    G   S  S  + +          ++      
Sbjct: 541 ANQFFDFLRAQIQSSSTKVLASPTLIIQEGDDESLGSDDRSISSDGKVGRSRSNEALVSV 600

Query: 313 GVVLHF----------------------------TPTVLSPGRIGLRIQTEVSEPV---I 341
           G  L                                 +   G +   +  EVS      +
Sbjct: 601 GTRLVTSYRVRQDDNANIFCEPVFKNAGLTFGARVDRIDDNGFVTFSLSPEVSAETGIRV 660

Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             N G++     R+ DT  + +  G T+VL G+++D   Q     P+L  IP +G  FR+
Sbjct: 661 IENCGNISLINSRELDTGKIRVRDGQTLVLTGVIQDSDVQAVTKWPILGDIPFIGQFFRS 720

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
           S  +R + E+ I  TP ++      + 
Sbjct: 721 SGGSRTKRELVILVTPRIIDDTQGGNY 747


>gi|218509314|ref|ZP_03507192.1| pilus assembly secretion protein [Rhizobium etli Brasil 5]
          Length = 177

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 4/130 (3%)

Query: 12  MSIFLFSSNPS-VAKLPPIKEANA---AVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
           ++I +    P+    L  + EA+A    +I I+       +++ +GLNK +++ +P D  
Sbjct: 18  LAISVTGMAPASFGPLLAVDEAHADSGNLIRIAQTGPDAHRRLKLGLNKAVVVDLPEDAH 77

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
           D+LVSDP+ AD V  + R +YLFGK VGQ N+ + G  G++++NLDI IERD++ LE  L
Sbjct: 78  DILVSDPSMADAVTRTSRRIYLFGKKVGQTNIFVFGAGGQEIINLDIEIERDVSGLEANL 137

Query: 128 RRFIADSNIR 137
           RRFI DSN +
Sbjct: 138 RRFIPDSNYQ 147


>gi|253771851|ref|YP_003034682.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|242378852|emb|CAQ33644.1| gspD [Escherichia coli BL21(DE3)]
 gi|253322895|gb|ACT27497.1| type II and III secretion system protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253979310|gb|ACT44980.1| general secretory pathway component, cryptic [Escherichia coli
           BL21(DE3)]
          Length = 338

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 39/72 (54%)

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           P++  R     V + +G T+VL GLL D  ++    +PLL  IP++G LFR +   R + 
Sbjct: 212 PTFNTRTIQNAVLVKTGETVVLGGLLDDFSKEQVSKVPLLGDIPLVGQLFRYTSTERAKR 271

Query: 409 EIFIAATPFLVK 420
            + +   P +++
Sbjct: 272 NLMVFIRPTIIR 283


>gi|153951393|ref|YP_001397557.1| type II and III secretion system protein [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938839|gb|ABS43580.1| bacterial type II and III secretion system protein [Campylobacter
           jejuni subsp. doylei 269.97]
          Length = 391

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/223 (21%), Positives = 84/223 (37%), Gaps = 11/223 (4%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q+  K+TI E   D LK+ G + S     +                   +  V    D+
Sbjct: 167 PQLKFKITILETNLDFLKEKGSKLSSLFQGNPIKDFHLFVNLITIPYNSQNNIVSS--DK 224

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----- 308
             F + L+ LE     R ++ P L A S     F+S     +   S+S   T V+     
Sbjct: 225 KGFYSTLNFLENQRITRIVSNPFLLARSNTEVFFSSVQNIPFLKNSTSVSDTRVSQNTSY 284

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
              D G+ +   P ++   ++   +   V + +   N+   P    ++  ++  L  G  
Sbjct: 285 DYRDVGLQVTLKPVIIGD-KVDFSLHLIVEDLLS--NSNLTPVTSKKELKSSYTLKKGEL 341

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
           +VL+G+ K        GIP L  I  LG LF+  R     + +
Sbjct: 342 LVLSGINKVTNTNYTSGIPYLKDIWFLGNLFKIQRKETNNSVL 384


>gi|194437943|ref|ZP_03070037.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
 gi|194423164|gb|EDX39157.1| outer membrane lipoprotein BfpB [Escherichia coli 101-1]
          Length = 545

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +  LN   E QVT+ V +  V    +  +        + +G       
Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                                 + + +L+ L  +  +  +    +T +SGQ      G  
Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399

Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             Y +   +       T + S ++   G +++  P+V   G I L+    +S  V   + 
Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459

Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                       +P+        +  L +G T++LAG  +   +    G   L K P   
Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEISDSG---LGK-PGFK 515

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            L  +           I+ TP ++   A +
Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545


>gi|191166277|ref|ZP_03028110.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli B7A]
 gi|317054603|ref|YP_004119670.1| PilN [Escherichia coli]
 gi|51038809|gb|AAT94189.1| PilN [Escherichia coli]
 gi|190903704|gb|EDV63420.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli B7A]
 gi|284433134|gb|ADB84873.1| PilN [Escherichia coli]
 gi|323974480|gb|EGB69607.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli TW10509]
          Length = 539

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|305667882|ref|YP_003864356.1| type IV pilus formation outer membrane protein [Escherichia coli]
 gi|304655631|emb|CBM42300.1| type IV pilus formation outer membrane protein [Escherichia coli]
 gi|333011616|gb|EGK31029.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella flexneri K-227]
 gi|333011730|gb|EGK31139.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella flexneri K-227]
          Length = 539

 Score =  105 bits (262), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|170765827|ref|ZP_02900638.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
 gi|170124973|gb|EDS93904.1| outer membrane lipoprotein BfpB [Escherichia albertii TW07627]
          Length = 545

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 43/270 (15%), Positives = 86/270 (31%), Gaps = 21/270 (7%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +  LN   E QVT+ V +  V    +  +        + +G       
Sbjct: 280 TSAQNMKRVSEYIQKLNKQLERQVTIDVAVYSVSTSDVSNLSMSLQALLTRNGGVLGSIT 339

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                                 + + +L+ L  +  +  +    +T +SGQ      G  
Sbjct: 340 SNFPAASGTPTITGFLNGNGNSNNQVLLNLLATSGKVSVVTSAAVTTMSGQPVPLKVGND 399

Query: 293 HLYKTVSSS-------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             Y +   +       T + S ++   G +++  P+V   G I L+    +S  V   + 
Sbjct: 400 RTYVSQIGTVMGQTSTTSSASTSSVTTGFLMNLLPSVGEDGNILLQYGITISSLVGSNDG 459

Query: 346 ----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
                       +P+        +  L +G T++LAG  +   +    G   L K P   
Sbjct: 460 FDQATVNGTIIQLPNVDSTTFVQSSLLKNGNTLILAGYEQKRNEVSDSG---LGK-PGFK 515

Query: 396 ALFRNSRFNREETEIFIAATPFLVKPVAMR 425
            L  +           I+ TP ++   A +
Sbjct: 516 LLGGSRNGKDSREIKIISITPRIIDVKAGQ 545


>gi|168770541|ref|ZP_02795548.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|226201055|ref|YP_002756667.1| type IVB pilus formation outer membrane protein [Escherichia coli]
 gi|309783663|ref|ZP_07678313.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella dysenteriae 1617]
 gi|189360515|gb|EDU78934.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|219881684|gb|ACL52054.1| type IVB pilus formation outer membrane protein [Escherichia coli]
 gi|308928559|gb|EFP74016.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Shigella dysenteriae 1617]
 gi|324010812|gb|EGB80031.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 60-1]
          Length = 539

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|300993702|ref|ZP_07180511.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 200-1]
 gi|300305068|gb|EFJ59588.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 200-1]
          Length = 539

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|10955355|ref|NP_053067.1| BfpB [Escherichia coli]
 gi|190014869|ref|YP_001965381.1| Lipoprotein [Escherichia coli]
 gi|194429634|ref|ZP_03062153.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
 gi|215276196|ref|YP_002332159.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
 gi|22653674|sp|Q9S142|BFPB_ECO11 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
           Full=Bundle-forming pilus B; Flags: Precursor
 gi|229462858|sp|Q47068|BFPB_ECO27 RecName: Full=Outer membrane lipoprotein BfpB; AltName:
           Full=Bundle-forming pilus B; Flags: Precursor
 gi|6009381|dbj|BAA84840.1| BfpB [Escherichia coli]
 gi|109389590|gb|ABG29509.1| Lipoprotein [Escherichia coli]
 gi|194412358|gb|EDX28661.1| outer membrane lipoprotein BfpB [Escherichia coli B171]
 gi|215267792|emb|CAS07441.1| lipoprotein [Escherichia coli O127:H6 str. E2348/69]
 gi|323159042|gb|EFZ45043.1| outer membrane lipoprotein bfpB [Escherichia coli E128010]
          Length = 552

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +N LN   E QVT+ V I  V       +          +G      +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344

Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  S    F          S + +L+ L     +  +   ++T +SGQ      G 
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404

Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
              Y +          ++   S +T   G +++  P V   G I L+    +SE V   N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464

Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +P+        +  L +G T+VLAG  K   + + +G+   +   +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G        +   T   I  TP ++ 
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546


>gi|323191604|gb|EFZ76862.1| outer membrane lipoprotein bfpB [Escherichia coli RN587/1]
          Length = 552

 Score =  105 bits (262), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +N LN   E QVT+ V I  V       +          +G      +
Sbjct: 285 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 344

Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  S    F          S + +L+ L     +  +   ++T +SGQ      G 
Sbjct: 345 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 404

Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
              Y +          ++   S +T   G +++  P V   G I L+    +SE V   N
Sbjct: 405 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 464

Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +P+        +  L +G T+VLAG  K   + + +G+   +   +L
Sbjct: 465 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 523

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G        +   T   I  TP ++ 
Sbjct: 524 GGAL---NGSASRTVTVICITPRIID 546


>gi|325282922|ref|YP_004255463.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324314731|gb|ADY25846.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 655

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 115/312 (36%), Gaps = 39/312 (12%)

Query: 139 EMVSDTVVLHGMVRTIQDSQR-AVELSETFLSQSGRNQYANSSSKKVMNLLNI-----AG 192
                   + G    + D+ R A + +         +     +  +V  +  +       
Sbjct: 351 SSAGTNSTVSGTNTALGDATRLASQEATIIADPRTNSLIVRGTPTQVAQIAELIPTLDRK 410

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+ L+V I E+  +  K +G    +T          +             F+    + 
Sbjct: 411 VPQINLQVRIQEINEEATKTLGVNWRVTAGGFNVGILPSG--------LTASFNPLQTVT 462

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQ---------------SASFTSGGQHLYKT 297
            F+    L+ALE     + + + T++  SGQ               +A+    G  L   
Sbjct: 463 GFNIFPALNALESQRVAKRVYDGTVSMQSGQGSLNAGTGSQDASSTAAASIRSGGRLELN 522

Query: 298 VSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVI---------GVNAGD 347
           +  + G+    T  YGVVL F  P+V   G I LR++ +++E               A  
Sbjct: 523 IIGAEGSNIEKTIPYGVVLDFFEPSVAPDGTITLRVRGQINELRNREALNAALASGGAPS 582

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +  +    A T +   SG T++LAGL+ ++    K G+P LS+IP LGAL          
Sbjct: 583 LLDFLNSDAQTKISFKSGETVLLAGLMAENNSTTKSGLPFLSQIPGLGALAGEQSTTNNG 642

Query: 408 TEIFIAATPFLV 419
           T++    T  ++
Sbjct: 643 TQMLFVITGDII 654


>gi|119489367|ref|ZP_01622147.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
 gi|119454640|gb|EAW35786.1| general secretion pathway protein D [Lyngbya sp. PCC 8106]
          Length = 800

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/185 (19%), Positives = 70/185 (37%), Gaps = 15/185 (8%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-------T 308
           F   L    +    + L +PTL    G+ A        + +  + +     V        
Sbjct: 596 FLQTLQFEIQNRNAKILTDPTLLVQEGEIARVELVENIVKRFNTDTIDNNGVQRTERQPE 655

Query: 309 THDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPS------YRVRKADT-TV 360
             D G+ +      V   G + + +   V+     +N G +           R+  +  +
Sbjct: 656 FEDVGLEVSINVERVDDNGFVTINVNPVVTAITNRINIGGVTGEDFVTETSRREYQSGRI 715

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L  G T++++G++++  +     IP L  +PILGALFR+S       E+ +  TP ++ 
Sbjct: 716 RLRDGQTLIVSGIIQEQDRVTASKIPFLGDLPILGALFRSSTRETGRAEVVVLVTPMIMD 775

Query: 421 PVAMR 425
                
Sbjct: 776 ESDRA 780


>gi|153212013|ref|ZP_01947830.1| VcsC2 [Vibrio cholerae 1587]
 gi|124116809|gb|EAY35629.1| VcsC2 [Vibrio cholerae 1587]
          Length = 461

 Score =  105 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 57/288 (19%), Positives = 100/288 (34%), Gaps = 10/288 (3%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
           +     +   +      +     +   +   RA ++        +     +  N  +   
Sbjct: 163 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 222

Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            N L + G  D+V L   IA +     +Q+ F   +   S+   + F  D      S G 
Sbjct: 223 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 282

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D  V    +   F     AL      R + E  L  +  Q   F             S 
Sbjct: 283 YDLVVPPFTETTDFLRNFQALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 340

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359
                   +    L+ T  +L  G +  RI   +  + +     N+   P    +  ++ 
Sbjct: 341 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 400

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           V +  G TI+L G      QQ+K GIP+LS IP+LG LF+++   + +
Sbjct: 401 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 448


>gi|284009077|emb|CBA76056.1| general secretion pathway protein D [Arsenophonus nasoniae]
          Length = 221

 Score =  104 bits (260), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/194 (21%), Positives = 77/194 (39%), Gaps = 5/194 (2%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV ++  + E          F       S+          G    S GG F   G+  
Sbjct: 33  RTQVLIESIMFETTDGSNFNFSFGVGKKSGSTVVGGVNTTTLGDILSSSGGSF---GIFS 89

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                  L A++     + L+ P +  +SGQ+      G+ + + V       ++   D 
Sbjct: 90  GNVLGLALTAVQGDKHSKLLSVPRILTLSGQNVPI-VTGKIIGQGVDVKNPFQTIERRDV 148

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L  TP VL+   + L ++++        NA D+  +  R  DTTV+L +G T+++ G
Sbjct: 149 GISLDVTPVVLNGDSVMLTVKSKADSVSNISNATDI-VFNQRSIDTTVQLKNGDTLLIGG 207

Query: 373 LLKDDIQQLKEGIP 386
           L++ +       +P
Sbjct: 208 LIQHNAVNSTSSVP 221


>gi|1122402|emb|CAA92328.1| BfpB [Escherichia coli]
          Length = 553

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 88/266 (33%), Gaps = 22/266 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
            +        + +N LN   E QVT+ V I  V       +          +G      +
Sbjct: 286 TSSANMKKINEYINTLNAQLERQVTIDVAIYNVTTTDSSDLAMSLEALLKHNGGVLGSVS 345

Query: 233 DFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
                  S    F          S + +L+ L     +  +   ++T +SGQ      G 
Sbjct: 346 TSNFAATSGTPSFTGYLNGNGDSSNQVLLNLLAEKGKVSVVTSASVTTMSGQPVPLKVGN 405

Query: 292 QHLYKTVSS-------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
              Y +          ++   S +T   G +++  P V   G I L+    +SE V   N
Sbjct: 406 DRTYVSEIGTVLSQSSTSTTASTSTVTSGFLMNLLPQVADDGNILLQYGVTLSELVGSNN 465

Query: 345 A----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                        +P+        +  L +G T+VLAG  K   + + +G+   +   +L
Sbjct: 466 GFDQATVNGTVIQLPNVDSTTFVQSSMLRNGNTLVLAGYEKKRNESVDQGV-GTTSFKLL 524

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
           G        +   T   I  TP ++ 
Sbjct: 525 GGAL---NGSASRTVTVICITPRIID 547


>gi|87123518|ref|ZP_01079369.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
 gi|86169238|gb|EAQ70494.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. RS9917]
          Length = 771

 Score =  104 bits (260), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 42/207 (20%), Positives = 71/207 (34%), Gaps = 32/207 (15%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISG-----------------------QSASFTS 289
              F   L A   +++ + LA PTL    G                         A    
Sbjct: 547 TNQFFDFLRAKIESSSTKVLASPTLVLQEGGEKSMGTDKGKISEDGKIGREYSNEAYVRV 606

Query: 290 GGQHLYKTVSSS--TGATSVTTHDYGVVLHF---TPTVLSPGRIGLRIQTEVSEPVIGVN 344
           G Q +          G            L F      +   G I   +  E+S PV    
Sbjct: 607 GTQFVTSYEVKQDINGNNFCQPVFANAGLTFGARVDKIDDNGFITFALSPEISAPVGSEQ 666

Query: 345 AGD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
            G+   +     R  DT  + +  G T++L G++ D  +++    P+L  +P +G  FR+
Sbjct: 667 VGNCGAITIINDRSLDTGKIRVRDGQTLILTGVINDTDREVVSKWPILGDLPFVGQFFRS 726

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
           S   R ++E+ I  TP ++   +    
Sbjct: 727 SGGQRSKSELVILVTPRIIDDRSGGSY 753


>gi|153829308|ref|ZP_01981975.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
 gi|148875208|gb|EDL73343.1| msha biogenesis protein mshl [Vibrio cholerae 623-39]
          Length = 137

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 50/113 (44%), Gaps = 9/113 (7%)

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-------NAGDMP--SYRVRKADTTVELPSGG 366
           +  TP +   G + L +   V E               ++P     +R++D+ +    G 
Sbjct: 1   MDVTPQIDDQGNVLLHVHPAVIEVEQQTKKILYRSEEIELPLARSSIRESDSVIRAKDGD 60

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            +V+ GL+K +       +P L  +P LG LFRN+    ++TE+ I   P +V
Sbjct: 61  VVVIGGLMKSNTVDQVSKVPFLGDVPALGHLFRNTTKLTQKTELVILLKPTVV 113


>gi|254508151|ref|ZP_05120276.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
 gi|219548873|gb|EED25873.1| fimbrial assembly protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/333 (15%), Positives = 104/333 (31%), Gaps = 76/333 (22%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G    + +         T        +      + +++ L+I  + QV
Sbjct: 245 KASEIAEMIGGQGAASMLSERGSLTVDERTNALLIRDLKENIDVIRDIIDTLDIPVK-QV 303

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------A 232
            ++  I  V    L ++G +   T ++   +   +                         
Sbjct: 304 QIEARIVSVNEGNLDELGVRWGFTSTNGNNTVGGSIESNLFQAGLLEGDNLPVDDFLNVN 363

Query: 233 DFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  +    F V  +      +  L AL+R +    ++ P L   + + A    G +
Sbjct: 364 LGATSATASSIAFQVAKLGSDLLLDLELSALQRESKAEVISSPRLITTNKKPAYIEQGTE 423

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--VIGVNAGDMPS 350
             Y    SS+GAT+VT     + L  TP +    R+ L +      P  V+    G+  +
Sbjct: 424 IPYLES-SSSGATTVTFKKAVLSLKVTPQITPDNRLVLDLNVTQDRPGDVVKTGTGEAVA 482

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF------------ 398
              ++  T V + +G T+VL G+                        F            
Sbjct: 483 INTQRIGTQVLVENGETVVLGGI------------------------FQHSVTDTVDKVP 518

Query: 399 ------------RNSRFNREETEIFIAATPFLV 419
                       R S     ++E+ I  TP +V
Sbjct: 519 LLGDLPLLGALFRRSYQQMGKSELLIFVTPKVV 551


>gi|300940175|ref|ZP_07154781.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 21-1]
 gi|300455011|gb|EFK18504.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 21-1]
          Length = 410

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 173 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 232

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 233 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 292

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 293 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 352

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 353 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 408

Query: 418 LV 419
           ++
Sbjct: 409 II 410


>gi|318040699|ref|ZP_07972655.1| general secretory pathway protein D [Synechococcus sp. CB0101]
          Length = 167

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 56/146 (38%), Gaps = 5/146 (3%)

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPTVLSPGRIGLRIQTEVSEPVIGVNA 345
                 +  K   +          + G+        +   G +   +  E+S  V     
Sbjct: 3   TQYVTAYAVKQDINGNNFCEPKFGNAGLTFGARVDKIDDNGFVTFSLSPEISAAVGTQQI 62

Query: 346 GD---MPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                +     R  DT  V +  G T++L G++ D+ + +    P+L  +P++G  FR S
Sbjct: 63  DRCGIIYQINDRLLDTGKVRVRDGQTLILTGVISDEDRSVVTKWPILGDLPLVGQFFRRS 122

Query: 402 RFNREETEIFIAATPFLVKPVAMRDL 427
             +R ++E+ I  TP +VK     D 
Sbjct: 123 SGDRRKSELVIMVTPRIVKDDQGGDY 148


>gi|301030047|ref|ZP_07193001.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 196-1]
 gi|299877181|gb|EFI85392.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 196-1]
          Length = 403

 Score =  104 bits (259), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 79/242 (32%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 166 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDTVTGGVSIVNGK 225

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  +   +    +          Q  Y    ++    +V     
Sbjct: 226 LTGSKAFLKALSSQGDVSVVTRNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 285

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 286 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 345

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L        ++T + +  TP 
Sbjct: 346 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGINSENDDTILVVLITPN 401

Query: 418 LV 419
           ++
Sbjct: 402 II 403


>gi|149925492|ref|ZP_01913756.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
 gi|149825609|gb|EDM84817.1| Type II secretory pathway component PulD-like protein [Limnobacter
           sp. MED105]
          Length = 633

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 48/242 (19%), Positives = 82/242 (33%), Gaps = 15/242 (6%)

Query: 191 AGEDQVTLKVTIAEVRR--------DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
            G   + + V +   +         ++L  +  Q      +                   
Sbjct: 310 GGPRMLLIDVILLSTQELISTSKGVNLLNALTLQLGNVAGNVAAYSRVNNSTVTNGGPAD 369

Query: 243 GDFSVKGVLDRFSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQ---HLYKTV 298
              ++   +   +    L+ A   ++    LA PTL AI G  + F SG         T 
Sbjct: 370 VSTAITRAVTIPALSYSLNIANANSSLNEVLARPTLAAIEGLPSEFFSGTNLSAGFVSTS 429

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMP---SYRVRK 355
                         G+ L  TP  L  GRI L+++ + +          +          
Sbjct: 430 VQGGTTVVPLEKRIGIKLAVTPVFLPQGRIQLKVEAQRTNLNATTENPRVAYQIEIGETT 489

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           A+  V +  G T+VL+GL +      ++G+P L  +P L  LF N R N  +  + I  T
Sbjct: 490 ANANVVMNLGDTLVLSGLSEKSSASNRDGVPGLQDVPGLQYLFSNKRTNDLQRSVLILVT 549

Query: 416 PF 417
           P 
Sbjct: 550 PR 551


>gi|153827975|ref|ZP_01980642.1| VcsC2 [Vibrio cholerae 623-39]
 gi|148876556|gb|EDL74691.1| VcsC2 [Vibrio cholerae 623-39]
          Length = 467

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 101/288 (35%), Gaps = 10/288 (3%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
           +     +   +      +     +   +   RA ++        +     +  N  +   
Sbjct: 169 QATFPGAQSLIASAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 228

Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            N L + G  D+V L   IA +     +Q+ F   +   S+   + F  D      S G 
Sbjct: 229 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGI 288

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D  V    +   F    HAL      R + E  L  +  Q   F             S 
Sbjct: 289 YDLVVPPFTETTDFLRNFHALTSNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 346

Query: 303 GATSVTTHDYGVVLHFTPTVLSPGRIGLRI---QTEVSEPVIGVNAGDMPSYRVRKADTT 359
                   +    L+ T  +L  G +  RI   +  + +     N+   P    +  ++ 
Sbjct: 347 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDKESDNSNRPPKVSSQSLNSE 406

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           V +  G TI+L G      QQ+K GIP+LS IP+LG LF+++   + +
Sbjct: 407 VYIKPGQTIILGGFDNTVTQQMKSGIPVLSSIPLLGELFKSTSEVKSK 454


>gi|325284394|ref|YP_004256934.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
 gi|324316458|gb|ADY27571.1| type II and III secretion system protein [Deinococcus proteolyticus
           MRP]
          Length = 784

 Score =  104 bits (258), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 16/257 (6%)

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITG 221
           L++   +            + V  +  I    Q V + + + +V++   K +G    +  
Sbjct: 442 LADDRTNSLLIVGPRGVVEEMVTAVQTIDVPVQAVRVNLKVLQVKQSDAKALGLDWKLGL 501

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
                 +   +   G   S              S E  L+A       RTL +   TA+S
Sbjct: 502 GGVTFGQQNGSLSLGYTPSLTPA----------SIEAKLNATLSNGNGRTLIDSQFTALS 551

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTT----HDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           GQ   F +GG+ +++  SS+ G  +V T    + YG+ +   P +   G + L + T + 
Sbjct: 552 GQETKFQNGGELVFRPQSSTVGDNTVQTPAQTYSYGLDITMRPRIAPDGTVVLVLDTTLG 611

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
            P +     D      +   TTV++  G T+VL G++   +     GIP L  +P++G L
Sbjct: 612 NPPVR-GVLDSIQQTRQALKTTVQIRPGETVVLGGVVTSSVSNSSSGIPGLRDLPVIGPL 670

Query: 398 FRNSRFNREETEIFIAA 414
           F     +R +  +    
Sbjct: 671 FGQQSTDRNDDALLFVL 687


>gi|85713096|ref|ZP_01044131.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
 gi|85693082|gb|EAQ31045.1| type IV pilus protein, PilN [Idiomarina baltica OS145]
          Length = 489

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 86/274 (31%), Gaps = 26/274 (9%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +                  + +N LN +   QV L V + EVR D  +Q     S    +
Sbjct: 219 ANASALLVKDTPSVIKQVDRYINQLNKSLTRQVALDVQVIEVRFDDSEQFTVDWSSVRRT 278

Query: 224 SGPSKSFAADFGGK--FVSEGGDFSVKGVLDRFS-FETVLHALERATAIRTLAEPTLTAI 280
           S  +    +  G         G F +  +    +  + ++ AL+    ++    P +  +
Sbjct: 279 SQGTPWLTSQSGSDNWLQQAAGRFILSPLSGPRNSIDILVQALQEQGQVKVSHHPRILTL 338

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSVTTHD--------YGVVLHFTPTVLSPGRI---- 328
           + Q A      +  Y   S  +    V             G  +   P +L    +    
Sbjct: 339 NHQVAQLLVEEEQAYLAESEVSTTPYVGQQQRLKPGKLTTGFRMFVLPNILKRDVLLHLS 398

Query: 329 -GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ--QLKEGI 385
             +     ++    G N    P    +       +    T++L G     +Q  + + G+
Sbjct: 399 SQMSALQGMNVVQSGDNMIQTPHTSRKHFFLKALVGHEETLLLTGFRNQTVQAGRTRSGV 458

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             L        L    + +RE +E  +  TP +V
Sbjct: 459 SWL--------LGGGQQKSRENSETLLLITPRIV 484


>gi|289628765|ref|ZP_06461719.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
          Length = 578

 Score =  104 bits (258), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575

Query: 418 L 418
           +
Sbjct: 576 V 576


>gi|217077653|ref|YP_002335371.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
 gi|217037508|gb|ACJ76030.1| general secretion pathway protein D, putative [Thermosipho
           africanus TCF52B]
          Length = 368

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 72/221 (32%), Gaps = 21/221 (9%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++V I E+     K+ G   +                        G+  +       +F 
Sbjct: 164 IQVKIIEIDESDFKKFGVSWNNEE-------------NNTTSYNNGNLQLSLNPLNVNFN 210

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            ++  L  +   + LAE TL   S  ++  T      +     +T           +  H
Sbjct: 211 IIMDTLISSGNAKVLAEGTLKLKSNSTSQITGYTTVGFTIGKDNTYVEKKINTQIIISGH 270

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD 377
                       L +++ V   +   +            +T +++       +AGL  D 
Sbjct: 271 V-----FTDHANLTLKSIVESFIQNSSTFTPVGAS---VETNLDIKYEQPYYIAGLSFDS 322

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           + +   GIP L  IPI+G LF+NS +   +  I I     L
Sbjct: 323 VTKQDGGIPGLKDIPIIGNLFKNSTYTSRKKNIVIFIKARL 363


>gi|68637854|emb|CAI36059.1| type IV pilus protein [Pseudomonas syringae pv. phaseolicola]
          Length = 578

 Score =  103 bits (257), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 460 AITPGTITSGFNMTLQPRLIDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575

Query: 418 L 418
           +
Sbjct: 576 V 576


>gi|330870423|gb|EGH05132.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 578

 Score =  103 bits (257), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 575

Query: 418 L 418
           +
Sbjct: 576 V 576


>gi|76819723|ref|YP_335816.1| hypothetical protein BURPS1710b_A0657 [Burkholderia pseudomallei
           1710b]
 gi|76584196|gb|ABA53670.1| unknown [Burkholderia pseudomallei 1710b]
          Length = 888

 Score =  103 bits (256), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 608 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 667

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 668 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 727

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 728 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 787

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 788 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 847

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 848 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 881


>gi|213026060|ref|ZP_03340507.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 173

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 33/168 (19%), Positives = 66/168 (39%), Gaps = 6/168 (3%)

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           F   L+ALE+++    L++P++  ++   A          K          + +   G +
Sbjct: 1   FMVRLNALEKSSQAYVLSQPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSL 58

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVELPSGGTIVLA 371
           L  TP +L+     +I L +  +  +     +    +P  +  +  +   L +G +++L 
Sbjct: 59  LRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSEIASQATLLAGQSLLLG 118

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G  +      +  IPLL  IP++G LFRN                 +V
Sbjct: 119 GFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIKASVV 166


>gi|94969549|ref|YP_591597.1| TPR repeat-containing protein [Candidatus Koribacter versatilis
           Ellin345]
 gi|94551599|gb|ABF41523.1| TPR repeat protein [Candidatus Koribacter versatilis Ellin345]
          Length = 619

 Score =  103 bits (256), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 91/292 (31%), Gaps = 58/292 (19%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
           A   QV L V++  V   +  Q+G Q     ++       A        S        G 
Sbjct: 319 ASRPQVALDVSVYRVSGTLTHQLGVQPPNQFTTFNLGSVLAGLGATNLQSLINQIISSGA 378

Query: 251 LD---RFSFETVL-HALERATAIRTLAEPTLT---------------------------- 278
           ++         ++  AL           P +T                            
Sbjct: 379 INQANGTDISALITQALGNTQLATLFQTPFVTYGGGLTLMALTVPGTTLNLNFSKANFQN 438

Query: 279 -------AISGQSASFTSGGQHLY------------------KTVSSSTGATSVTTHDYG 313
                  A    +A+   G ++                    +T +      S    D G
Sbjct: 439 LAHMQLRASQNNAATMRIGERYPILNATFAPIYNTPQISALLRTGTYVAPFPSFNYEDLG 498

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
           + +  TP++     + L ++ ++     G +   MP    ++   T+ L  G   V+   
Sbjct: 499 LTVKATPSIQGNRDVRLNLEMQMRSLGAGTS-NGMPIINNQEYKGTISLKDGEPGVVVSY 557

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMR 425
           L +   +   GIP L +IP LG+   ++     E+E+ +  TP ++K +  +
Sbjct: 558 LTESESRSISGIPGLGQIPGLGSAVASTDREGVESELLVIITPHVLKVIEPK 609


>gi|221271462|dbj|BAH15014.1| putative type III secretion system apparatus protein VscC2 [Vibrio
           parahaemolyticus]
          Length = 488

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
           +     +   +      +     +   +   RA ++        +     +  N  +   
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGEIVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248

Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            N L + G  D+V L   IA +     +Q+ F   +   S+   ++F  D      S G 
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D  V    +   F     AL      R + E  L  +  Q   F             S 
Sbjct: 309 YDLVVPPFTETIDFLRNFQALASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366

Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
                   +    L+ T    P+     RI    ++   +     N+   P    +  ++
Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            V +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|209922067|ref|YP_002296140.1| lipoprotein PilN [Escherichia coli SE11]
 gi|209915245|dbj|BAG80318.1| lipoprotein PilN [Escherichia coli SE11]
          Length = 560

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + +             +  + ++  N     QV L V +  V     +Q G   ++   S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340

Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              + +   +  G F             +            ++ AL     +  +     
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
           T  +          Q +Y   S++T  T V             G  +   P +   G + 
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460

Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           L++   +S+P          G +  +MP  ++R     V L  G ++V+ G  +++    
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           K G       P+ G    +     E + + I  TP 
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552


>gi|148241667|ref|YP_001226824.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
 gi|147849977|emb|CAK27471.1| Type II secretory pathway, component PulD [Synechococcus sp.
           RCC307]
          Length = 760

 Score =  102 bits (255), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/186 (20%), Positives = 81/186 (43%), Gaps = 13/186 (6%)

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL----YKTVSSSTGATSVTTH 310
            F   + AL R+++ + +A+PTL     +S+S   G          T ++ T   +    
Sbjct: 557 QFFDFVKALIRSSSAKVVADPTLLVQESESSSVGVGTTVFVNCSSSTSANGTRNFTPKKE 616

Query: 311 DYGVVLHF-TPTVLSPGRIGLRIQTEVSEPV-----IGVNAGDMPS--YRVRKADT-TVE 361
             G+ +      +   G + L +   +  P      +     D+P+    VR+  +    
Sbjct: 617 TAGLQVDVSVSRIDDNGFVSLALNPVLKAPSGLPVPVNCGGIDLPTRDLAVRELRSGEFR 676

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
           +  G T++L G++++++ +  +  PLL  +P++G  FR S   R++ E+ I  TP ++  
Sbjct: 677 VRDGQTLILTGVIQEEVLESVDKWPLLGDVPLIGQFFRKSSNTRQKRELVIVVTPRILDD 736

Query: 422 VAMRDL 427
               + 
Sbjct: 737 NQGGNY 742


>gi|171911301|ref|ZP_02926771.1| type II and III secretion system protein [Verrucomicrobium spinosum
           DSM 4136]
          Length = 173

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 51/101 (50%), Gaps = 1/101 (0%)

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
           +   +  N  + P +  RK  T V +  G T+ + GL+++D+Q +++ +P+L  +P LG 
Sbjct: 50  TTVTLTENKIEQPVFSTRKVTTAVTVWDGQTVAMGGLIREDVQDVEDKVPILGDLPFLGR 109

Query: 397 LFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVE 437
           LF++   +  +  + I  T  L+ P +   + +P    +  
Sbjct: 110 LFQSKAEDHFKRNLMILVTAKLIDP-SGEPVRKPAPAPTAP 149


>gi|261226370|ref|ZP_05940651.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
           coli O157:H7 str. FRIK2000]
          Length = 547

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L   V ++           T             S ++++N  N     QV L V I  ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   +Q G   +   +      S    FG    +                +  L AL   
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
            ++  + + +    +          Q  +    ++    +V         T   G  +  
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431

Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P +    +       + L  +        G +    P+  ++  + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491

Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
           G  + + +  K+G+     I P    L         +T + +  TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535


>gi|320198845|gb|EFW73444.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli EC4100B]
          Length = 547

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L   V ++           T             S ++++N  N     QV L V I  ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   +Q G   +   +      S    FG    +                +  L AL   
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
            ++  + + +    +          Q  +    ++    +V         T   G  +  
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431

Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P +    +       + L  +        G +    P+  ++  + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491

Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
           G  + + +  K+G+     I P    L         +T + +  TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535


>gi|83404883|ref|YP_424898.1| PilN [Escherichia coli]
 gi|299836184|ref|YP_003717753.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
 gi|46949078|gb|AAT07432.1| PilN [Escherichia coli]
 gi|83308609|emb|CAI79602.1| lipoprotein (PilN protein) [Escherichia coli]
 gi|297374533|emb|CBL93616.1| putative lipoprotein [Escherichia coli ETEC 1392/75]
          Length = 560

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + +             +  + ++  N     QV L V +  V     +Q G   ++   S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340

Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              + +   +  G F             +            ++ AL     +  +     
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDSATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
           T  +          Q +Y   S++T  T V             G  +   P +   G + 
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460

Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           L++   +S+P          G +  +MP  ++R     V L  G ++V+ G  +++    
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           K G       P+ G    +     E + + I  TP 
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552


>gi|289647482|ref|ZP_06478825.1| type II and III secretion system protein [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 542

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 244 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 303

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 304 LFNVKVFEATLTDTDQLALNWAAVYNSLNTKWGLSLSNTVPGISSSAISGSVGIVDTANS 363

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 364 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 423

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 424 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 483

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 484 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPI 539

Query: 418 L 418
           +
Sbjct: 540 V 540


>gi|66044764|ref|YP_234605.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
 gi|63255471|gb|AAY36567.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae B728a]
          Length = 578

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 280 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 339

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 340 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 399

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 400 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 459

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 460 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 519

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 520 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 575

Query: 418 L 418
           +
Sbjct: 576 V 576


>gi|301646351|ref|ZP_07246238.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 146-1]
 gi|301075418|gb|EFK90224.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 146-1]
          Length = 547

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L   V ++           T             S ++++N  N     QV L V I  ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   +Q G   +   +      S    FG    +                +  L AL   
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGNAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
            ++  + + +    +          Q  +    ++    +V         T   G  +  
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431

Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P +    +       + L  +        G +    P+  ++  + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491

Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
           G  + + +  K+G+     I P    L         +T + +  TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGINSEDGDTILVVLITPNVL 535


>gi|9507539|ref|NP_052546.1| lipoprotein [Plasmid ColIb-P9]
 gi|32470260|ref|NP_863484.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|168758374|ref|ZP_02783381.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4401]
 gi|168770673|ref|ZP_02795680.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|194447046|ref|YP_002039161.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194447207|ref|YP_002043952.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|195940171|ref|ZP_03085553.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4024]
 gi|256367618|ref|YP_003108177.1| lipoprotein [Escherichia coli]
 gi|307313385|ref|ZP_07593008.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli W]
 gi|4512536|dbj|BAA75185.1| lipoprotein [Plasmid ColIb-P9]
 gi|4903089|dbj|BAA77974.1| lipoprotein [Plasmid R64]
 gi|20521628|dbj|BAB91692.1| PilN type IV pilus secretin [Salmonella enterica subsp. enterica
           serovar Typhimurium]
 gi|70610254|gb|AAZ05401.1| lipoprotein [Salmonella enterica]
 gi|85813727|emb|CAJ65888.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium]
 gi|189354781|gb|EDU73200.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4401]
 gi|189360460|gb|EDU78879.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli O157:H7 str. EC4486]
 gi|194358490|gb|ACF56934.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Kentucky
           str. CVM29188]
 gi|194405511|gb|ACF65732.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Salmonella enterica subsp. enterica serovar Heidelberg
           str. SL476]
 gi|228480873|gb|ACQ42199.1| lipoprotein [Escherichia coli]
 gi|306906807|gb|EFN37317.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli W]
 gi|315063763|gb|ADT78089.1| Type IVB thin prepilin secretin [Escherichia coli W]
 gi|321271467|gb|ADW79557.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
 gi|321271565|gb|ADW79654.1| IncI1 conjugal transfer protein PilN [Escherichia coli]
 gi|321271661|gb|ADW79749.1| IncI1 conjugal transfer secretin protein PilN [Salmonella enterica
           subsp. enterica serovar Kentucky]
 gi|323133139|gb|ADX20567.1| lipoprotein [Salmonella enterica subsp. enterica serovar
           Typhimurium str. 4/74]
 gi|323381016|gb|ADX53283.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli KO11]
 gi|323959238|gb|EGB54902.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli H489]
 gi|330907922|gb|EGH36445.1| incI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli AA86]
 gi|332346621|gb|AEE59953.1| IncI1 conjugal transfer secretin protein PilN [Escherichia coli
           UMNK88]
          Length = 560

 Score =  102 bits (255), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + +             +  + ++  N     QV L V +  V     +Q G   ++   S
Sbjct: 281 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 340

Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              + +   +  G F             +            ++ AL     +  +     
Sbjct: 341 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 400

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
           T  +          Q +Y   S++T  T V             G  +   P +   G + 
Sbjct: 401 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 460

Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           L++   +S+P          G +  +MP  ++R     V L  G ++V+ G  +++    
Sbjct: 461 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 520

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           K G       P+ G    +     E + + I  TP 
Sbjct: 521 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 552


>gi|330900252|gb|EGH31671.1| type II and III secretion system protein [Pseudomonas syringae pv.
           japonica str. M301072PT]
          Length = 552

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 254 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLSNVETYLAKTNHAITQQV 313

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 314 LFNVKVFEATLTDTDQLALNWAAVYNSLSTRWGLSLSNTVPGISSSAISGSVGIVDTANS 373

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 374 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 433

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 434 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 493

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 494 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 549

Query: 418 L 418
           +
Sbjct: 550 V 550


>gi|229529211|ref|ZP_04418601.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
 gi|229332985|gb|EEN98471.1| hypothetical protein VCG_002304 [Vibrio cholerae 12129(1)]
          Length = 489

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 53/345 (15%), Positives = 114/345 (33%), Gaps = 51/345 (14%)

Query: 69  VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + V D + A  D  V+ P    L    +   N+    +   + L       +     +  
Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L      + ++    S+ +++ G     ++ + A  ++                      
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++    Q+   + + ++  +  + +G        S G        F            
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +   F     AL      R++ E  L A+  Q   F          +  S     
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SNREVK 371

Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVEL 362
               +    L+ T  +L  G++   ++   E  +     + G    P    +  ++ V +
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDDEGENSDGSQRPPRVSSQSLNSEVYI 431

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             G T++L G      QQ + G+P+LS IP+LG LF+ +  ++ +
Sbjct: 432 QPGQTVILGGFDNTVTQQQESGVPVLSSIPLLGELFKYTSESKHK 476


>gi|255595192|ref|XP_002536247.1| conserved hypothetical protein [Ricinus communis]
 gi|223520311|gb|EEF26137.1| conserved hypothetical protein [Ricinus communis]
          Length = 316

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 325 PGRIGLRIQTEVSEPVIGVNAGD---MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
             ++ +++  EVS     V         +   R A+TT++L +  T +LAGL +DD Q+ 
Sbjct: 2   QDQVSIKVGMEVSNITDQVTTSSGVLAYTIGSRNANTTLQLRNNETQILAGLFRDDEQKT 61

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           +  +P L  +P++G LF ++  ++ + EI +  TP ++  ++   
Sbjct: 62  RRKVPGLGNLPLIGKLFSSNNEDKRKNEIVLLITPRIMHNLSPAS 106


>gi|148240700|ref|YP_001226087.1| general secretory pathway protein D [Synechococcus sp. WH 7803]
 gi|147849239|emb|CAK24790.1| General secretory pathway protein D [Synechococcus sp. WH 7803]
          Length = 773

 Score =  102 bits (254), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/207 (19%), Positives = 70/207 (33%), Gaps = 33/207 (15%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
             F   L A  ++++ + LA PTL    G  ++  S    +          T+      G
Sbjct: 549 NQFFDFLAAQIQSSSTKILASPTLIIQEGSESTQGSDASKISADGKVGRERTNEALVSVG 608

Query: 314 VVLHF----------------------------TPTVLSPGRIGLRIQTEVSE----PVI 341
             L                                 +   G +   +  E+S     P  
Sbjct: 609 TKLVTSFEVKQDENGNNFCQPVFSNAGLTFGARVEKIDDNGFVTFSLSPEISAAVGVPET 668

Query: 342 GVNAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
             N G++     R  DT  + +  G T++L G++ D   Q     P+L  IP +G  FR+
Sbjct: 669 IGNCGNINIINSRTLDTGKIRVRDGQTLILTGVISDTDVQAVTKWPILGDIPFIGQFFRS 728

Query: 401 SRFNREETEIFIAATPFLVKPVAMRDL 427
           S  +R + E+ I  TP ++        
Sbjct: 729 SSGDRTKNELVILVTPRIIDDTQGGSY 755


>gi|315186870|gb|EFU20628.1| type II and III secretion system protein [Spirochaeta thermophila
           DSM 6578]
          Length = 696

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/238 (18%), Positives = 90/238 (37%), Gaps = 9/238 (3%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
             + Q+   + + + ++           ++ + +   +   +  G           V   
Sbjct: 438 RPQPQIRYDILVVQYQKSEGSDWSRNLDVSLTDTSVEQEPFSLVGSMGNLVSLGIDVVSE 497

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQ------SASFTSGGQHLYKTVSSSTGA 304
              ++F + L+     +     A  TLTA+SG+      +++F      +          
Sbjct: 498 FG-YTFASQLNLKLEESRANIYAHTTLTALSGKDVSFQNTSTFRYRDLEVDPDTGELLST 556

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVEL 362
             +     G +L+    V   G I + I   +SE     +     +P    R   T +  
Sbjct: 557 GVIRELTSGFILNLGGWVSGDGMITMNISATLSERSSESSDSTSAIPPTTERVVSTFLRT 616

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            SG  + ++GL++    ++   +P+L  IP+LG LFRNS+   E+ E+ I   P ++ 
Sbjct: 617 DSGKPVSISGLVQKKKTKIVNKVPVLGDIPLLGFLFRNSQEKEEDMEMVIYVVPRVMD 674


>gi|300819642|ref|ZP_07099834.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 107-1]
 gi|300907596|ref|ZP_07125231.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 84-1]
 gi|301306610|ref|ZP_07212671.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 124-1]
 gi|300400664|gb|EFJ84202.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 84-1]
 gi|300527809|gb|EFK48871.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 107-1]
 gi|300838171|gb|EFK65931.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 124-1]
 gi|315252987|gb|EFU32955.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 85-1]
 gi|315295843|gb|EFU55160.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 16-3]
 gi|324020971|gb|EGB90190.1| type IVB pilus formation outer membrane protein, R64 PilN family
           protein [Escherichia coli MS 117-3]
          Length = 552

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 86/276 (31%), Gaps = 26/276 (9%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           + +             +  + ++  N     QV L V +  V     +Q G   ++   S
Sbjct: 273 ASSSTLTVTDTPAVQEAVARYVDEQNSIMNRQVALNVQVLSVSNTRNEQFGLDWNLVYKS 332

Query: 224 SGPSKSFAADFGGKFVSEGGDF------SVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
              + +   +  G F             +            ++ AL     +  +     
Sbjct: 333 LHSAGATLNNASGDFTGATSAGVSILDTATGNAAKFSGSSLLIKALSEQGDVSVVTSQES 392

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPGRIG 329
           T  +          Q +Y   S++T  T V             G  +   P +   G + 
Sbjct: 393 TVTNLTPVPIQMADQTVYVAQSATTTTTDVGATTTLTPGMITTGFNMTLLPLIQKTGNLQ 452

Query: 330 LRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
           L++   +S+P          G +  +MP  ++R     V L  G ++V+ G  +++    
Sbjct: 453 LQMNFNLSDPPTIRSFTSKDGNSYIEMPYTKLRSLSQKVNLKEGQSLVVTGFDQNNTTTS 512

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           K G       P+ G    +     E + + I  TP 
Sbjct: 513 KAGT-FTPANPLFG---GSQTGKNERSTLVIIITPT 544


>gi|330952555|gb|EGH52815.1| type II and III secretion system protein [Pseudomonas syringae Cit
           7]
          Length = 547

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 93/301 (30%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   +Q           +LS S            + N        N +   QV
Sbjct: 249 NTSILTDIQSNVQAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHSITQQV 308

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 309 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 368

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 369 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 428

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 429 AITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDAKSLS 488

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   D++    + I      P    L         ++ + +  TP 
Sbjct: 489 PKVKLRSGQTLILSGF--DELNDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVLITPI 544

Query: 418 L 418
           +
Sbjct: 545 V 545


>gi|89885888|ref|YP_516086.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
 gi|89347886|gb|ABD72088.1| type II and III secretion system protein [Rhodoferax ferrireducens
           T118]
          Length = 622

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/249 (18%), Positives = 81/249 (32%), Gaps = 25/249 (10%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----DFGGKFVSEGGDFSVKGVL 251
           +     I EV      Q G + +    + GP  S  A           S G  FS     
Sbjct: 192 IVFDTYIYEVNLTDGAQTGIKWNKLAMAIGPGGSLGALGAVGGSTVADSGGMGFSAIYKG 251

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
            RF  +     L+    ++T+A+P +  +SG    F +G    Y +   +  +T++    
Sbjct: 252 SRFDLDAFFSFLQTQGNVKTIAQPKIAIMSGSKGGFKAGSTTKYVSQVGTNSSTTINQTT 311

Query: 312 Y-------GVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT 359
                   G+ L  T  V         RI L      +       +  +P    R+  T 
Sbjct: 312 VSTDTAVSGLDLSLTGDVSDGTVYARIRISLSELIRFNSFEALGTSLQLPQTTSRELTTA 371

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSK---IPILGALFRNSRFNREETEIFIAATP 416
           +    G  ++L G+          G+P       +P       +S      TE+ +   P
Sbjct: 372 IRARPGDVVLLGGVNNSSESSDYSGLPGEKGQMLVP------TSSNKKVARTELVMVMKP 425

Query: 417 FLVKPVAMR 425
            +V+    +
Sbjct: 426 KIVRFSNPQ 434


>gi|153930668|ref|YP_001393312.1| PilN family type IV pilus biogenesis protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958209|gb|ABS45671.1| type IV pilus biogenesis protein, PilN family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 564

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 83/254 (32%), Gaps = 23/254 (9%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-DFGGKFVSEGG 243
           +   NI    QV L V I  V    L  +G   ++   S          +      +   
Sbjct: 315 IASENIKITQQVLLNVKILSVSLKDLDDLGLDWNVIYKSMSGKWGINLKNAFSDLATNAT 374

Query: 244 DFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             S+  +     F+    ++ AL     +  +  P++T ++ Q A      Q  Y    S
Sbjct: 375 SGSISILDPNSQFDGTTMLIKALSEQGKVSVVTSPSITTLNLQPAPVQVSRQTSYLASRS 434

Query: 301 STGATS--------VTTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNA 345
           +T  T+          T   G  +   P ++   R       I L    ++ +     N 
Sbjct: 435 TTSTTNAGTETSLTPGTVTTGFNMSLLPAIIPDTRDLLLQYNINLSSLIQIRKIGTENNQ 494

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            +MP    R     V+L SG T+V++G  +      K G+         G        N 
Sbjct: 495 IEMPDTDSRIFSQQVKLRSGETLVISGFEQTADNANKSGV---GDAEFWG-FGGARSRNS 550

Query: 406 EETEIFIAATPFLV 419
               I +  TP L+
Sbjct: 551 TRDIIVVIITPVLL 564


>gi|83716256|ref|YP_438966.1| type IV pilus biogenesis protein PilN [Burkholderia thailandensis
           E264]
 gi|83650081|gb|ABC34145.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis E264]
          Length = 878

 Score =  102 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 87/278 (31%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   S+ 
Sbjct: 598 VSSPATGSISVTDTPDVLERVAAFMTQQNRSLSRQVLLNVTVLSVSLKAGDAYGIDWSLV 657

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +     +    F    +++  D S   +     F     ++ AL +   +R     ++
Sbjct: 658 YKTMSAGFNITNPFNPVSLTKPADLSATVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 717

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 718 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 777

Query: 330 LRIQTEVSEPVI-----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S  +                   P   +R     V + SG T+V++G    + 
Sbjct: 778 LQFSTNISSLLQLKEVSSSTGGRSAARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 837

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 838 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 871


>gi|28901194|ref|NP_800849.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260362753|ref|ZP_05775622.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
 gi|260880041|ref|ZP_05892396.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|260895158|ref|ZP_05903654.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|28809707|dbj|BAC62682.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085690|gb|EFO35385.1| protein VcsC2 [Vibrio parahaemolyticus Peru-466]
 gi|308092233|gb|EFO41928.1| protein VcsC2 [Vibrio parahaemolyticus AN-5034]
 gi|308112426|gb|EFO49966.1| protein VcsC2 [Vibrio parahaemolyticus K5030]
          Length = 487

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%)

Query: 69  VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           V V D   A  D  V+ P    L    +   N+    +   + L       +     +  
Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L      + ++    ++ +++ G     ++ + A  ++                      
Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++    Q+   + + ++  +  + +G        + G        F            
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +   F     AL      R++ E  L A+  Q + F          +  S     
Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371

Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
               +    L+ T  +L  G++   ++   E  +     ++   P    +  ++ V +  
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEESLDEDDNEDSNRPPRVSSQSLNSEVYIQP 431

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             T++L G      QQ + G+P++S IP+LG LF+ +  ++ +
Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474


>gi|330966660|gb|EGH66920.1| type II and III secretion system protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 578

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV   V + E       Q+    S    S       +       +S        G++D
Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395

Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +        ++ A+     I  +  P++T ++ Q A    G    Y     +    SV
Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455

Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353
            +           G  +   P ++          I +  +          ++  +P+Y  
Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +     V+L SG T++L+G   D++    + I      P    L         ++ + + 
Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRTSSQSFLVVL 571

Query: 414 ATPFL 418
            TP +
Sbjct: 572 ITPIV 576


>gi|32471490|ref|NP_864483.1| general secretory pathway protein D [Rhodopirellula baltica SH 1]
 gi|32443331|emb|CAD72164.1| similar to general secretory pathway protein D [Rhodopirellula
            baltica SH 1]
          Length = 1161

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%)

Query: 173  RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227
                 +    ++++LL      Q   +T++V    +     +QIG    +    + P   
Sbjct: 818  VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 877

Query: 228  ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                         S A    G   +         +L        
Sbjct: 878  GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 937

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312
            L A +  +    +  P +T   GQ AS        + T         +      +   D 
Sbjct: 938  LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 997

Query: 313  GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339
            G  L+    V    R + L +    S+                                 
Sbjct: 998  GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 1057

Query: 340  --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                    V        P++     +TTV +P GGTI+L G+ +    + + G+P LSKI
Sbjct: 1058 EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1117

Query: 392  PILGALFRNSRFNREETEIFIAATPF 417
            P +  LFRN+   RE   + +  TP 
Sbjct: 1118 PYVSRLFRNTAVGRESRSLMMMVTPR 1143


>gi|330959534|gb|EGH59794.1| putative type II and type III secretion system pilus protein
           [Pseudomonas syringae pv. maculicola str. ES4326]
          Length = 550

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 97/294 (32%), Gaps = 19/294 (6%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           ++ G+  + +       +    +  +G          + +          V ++V   +V
Sbjct: 254 MIGGLGNSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262
                KQ G   ++  +S+        +F     +    F          + +   ++  
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPTSDDPFWNVKGTYSSSKVTASALVKF 373

Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           LE+   +    +P +T  +G  A        ++    +       + T    +     GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368
            L  T  VL   ++ + +   +S               + P   +++  T +   SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493

Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L GL+   + +    +P   L    IL  L +    + E  E+ +  TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547


>gi|10955502|ref|NP_065354.1| type IV pilus outer membrane secretin lipoprotein PilN [Escherichia
           coli]
 gi|9971696|dbj|BAB12647.1| pilN [Escherichia coli]
 gi|326344460|gb|EGD68213.1| IncI1 plasmid conjugative transfer lipoprotein PilN [Escherichia
           coli O157:H7 str. 1125]
          Length = 547

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 91/289 (31%), Gaps = 21/289 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L   V ++           T             S ++++N  N     QV L V I  ++
Sbjct: 252 LKSEVSSMLTPGTGRMYLSTGSLTVTDTPDVLDSVQEIVNKRNNEMSRQVVLNVEILSIK 311

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +   +Q G   +   +      S    FG    +                +  L AL   
Sbjct: 312 KSSQEQAGIDWNAVFNDGHLGLSLGGSFGDAAENVITSGVSIVDGKLAGSKAFLKALSSQ 371

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
            ++  + + +    +          Q  +    ++    +V         T   G  +  
Sbjct: 372 GSVSVVTQNSAVTKNLTPVPMQIANQQGFIESVTTDSTANVGSSTSLNAATITTGFNMTL 431

Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P +    +       + L  +        G +    P+  ++  + T++L SG T++L+
Sbjct: 432 LPYIQPDSQNLQLLFSMSLSDKPTFEVFESGGSKAQTPNVDLKTINQTIDLKSGQTVILS 491

Query: 372 GLLKDDIQQLKEGIPLLSKI-PILGALFRNSRFNREETEIFIAATPFLV 419
           G  + + +  K+G+     I P    L         +T + +  TP ++
Sbjct: 492 GFQQSNRKTSKQGV-----ITPSFFGLGGGVNSEDGDTILVVLITPNVL 535


>gi|167621192|ref|ZP_02389823.1| Type II secretory pathway, component PulD [Burkholderia
           thailandensis Bt4]
          Length = 400

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 74/231 (32%), Gaps = 18/231 (7%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVK 248
               +V ++  + EV     +        S+ G   G     +   G             
Sbjct: 176 REAGEVVVRGWVYEVSNINSRNSAFSIAASLFGGIPGWGGKLSLSNGATDADPTA----- 230

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY-----KTVSSSTG 303
                   +  + AL+  +  R +++P +  +SG+      G Q            S T 
Sbjct: 231 LRFSSSMLDVAISALDADSRFRQISDPHVRVVSGERVRLNVGAQVPTLGSISYQGQSGTP 290

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
             SV   D G++    P V+         +   S         + P+   R+  T V + 
Sbjct: 291 VQSVEYQDAGLIFDVQPVVMGDVVQVRLAEQLSSFVTTTTGVNNSPTKNTREMSTVVNMK 350

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            G  +VL GL++D     +  I  L   P   + F     ++  TE+ +  
Sbjct: 351 DGEVVVLGGLVQDQDTSSRNSIGWL---P---SFFDGKSGSKGRTEVLLVL 395


>gi|328469624|gb|EGF40560.1| putative type III secretion system EscC protein [Vibrio
           parahaemolyticus 10329]
          Length = 488

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 98/289 (33%), Gaps = 11/289 (3%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
           +     +   +      +     +   +   RA ++        +     +  N  +   
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248

Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            N L + G  D+V L   IA +     +Q+ F   +   S+   + F  D      S G 
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKEHFGVDSSWVNGSRGV 308

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D  V    +   F     AL      R + E  L A+  Q   F             S 
Sbjct: 309 YDLVVPPFSETIDFLRNFQALASNGIARGVYETNLLALENQQGHFGKKQT--ATIALISN 366

Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
                   +    L+ T    P+     RI    ++   +     N+   P    +  ++
Sbjct: 367 KQVETQKIEADNSLYVTGRLLPSGDVQARIQYVEESLDDDEEDSDNSNRPPRVSSQSLNS 426

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            V +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|318605712|emb|CBY27210.1| putative phage-related secreted protein [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 420

 Score =  101 bits (252), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 21/287 (7%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI--AGEDQVTLKVTIAEV 205
            G +                           S  K++  LL +     ++V +   + EV
Sbjct: 141 SGQISPEVAVAGTASDFMNRTGDVLVYYGRKSEIKRLQTLLPLIDTASEEVIVAAYVFEV 200

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
           +              GS    +    +      +   G F     ++  S + +      
Sbjct: 201 QTSERN---------GSGLALAAKLLSGKLNIQIGASGGFDNFIRVNTGSLDALYELFRT 251

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            +    ++ P L    G SA+F+ G +       + + +    S+     GV+L   P +
Sbjct: 252 DSRFHVVSSPRLRVKDGASATFSVGNEVPVLGQVSYADNRPIQSIEYRSSGVILDVKPQI 311

Query: 323 LSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
            +   I L I+ ++S          + P+   R+ +T V    G  I+L GL +  +   
Sbjct: 312 RTDN-IDLVIKQQLSSFAKTDTGVNNSPTLIKREVNTEVSAADGDIILLGGLAESKVTNA 370

Query: 382 KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
             G   L K    G L  +S   + +T+I +      V+  +     
Sbjct: 371 DTGFSFLPK----GWL-TSSSDEKNKTDILVVLQAKKVRRASAAHAP 412


>gi|153836074|ref|ZP_01988741.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
 gi|149750828|gb|EDM61573.1| VcsC2 [Vibrio parahaemolyticus AQ3810]
          Length = 487

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 49/343 (14%), Positives = 113/343 (32%), Gaps = 49/343 (14%)

Query: 69  VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           V V D   A  D  V+ P    L    +   N+    +   + L       +     +  
Sbjct: 177 VSVMDRNIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L      + ++    ++ +++ G     ++ + A  ++                      
Sbjct: 235 LEEDEKSTKVQALPGTNALLIRGT---QEEVKLAKRIAA--------------------- 270

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++    Q+   + + ++  +  + +G        + G        F            
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGNRGIYDIVVPPFT----------- 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +   F     AL      R++ E  L A+  Q + F          +  S     
Sbjct: 319 -----ETKDFVKNFQALYSNGIARSVYETNLVALENQQSQFGKKQTATLTLI--SDKQVK 371

Query: 307 VTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
               +    L+ T  +L  G++   ++   E  +     ++   P    +  ++ V +  
Sbjct: 372 TEKIEADNSLYVTGRLLPSGQVQARIQYVEEALDEDDNEDSNRPPRVSSQSLNSEVYIQP 431

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
             T++L G      QQ + G+P++S IP+LG LF+ +  ++ +
Sbjct: 432 NQTVILGGFDNTVTQQQESGVPIISSIPLLGELFKYTSESKHK 474


>gi|148826860|ref|YP_001291613.1| putative phage-like secreted protein [Haemophilus influenzae
           PittGG]
 gi|148718102|gb|ABQ99229.1| putative phage-related secreted protein [Haemophilus influenzae
           PittGG]
          Length = 377

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 108/311 (34%), Gaps = 25/311 (8%)

Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168
           +   +      +AH+E   ++ + +S +   +  DT  L   ++  + +  A      + 
Sbjct: 82  IKVYEKKGVVYLAHIESQPKKVMKNSFVYSPIYRDTEYLSQFLKDEEGAVSASGDKLVYY 141

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
            ++       S  K V    ++   + V +   + EV+ +  +  G              
Sbjct: 142 GKTEDIARVKSVLKGV----DVPSRE-VVVTGYVFEVQTEEKEGSGINLLAK-------- 188

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFT 288
              +   G  +    ++     ++  + + ++      +    ++ PTL   SG   +F+
Sbjct: 189 -LLSGKLGINIGVKQNYENFITVNTGNLDAMIELFRTDSRFHVVSSPTLRVKSGSKGNFS 247

Query: 289 SGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
            G                   S+     GV+    PT +    I L+I  ++S  V    
Sbjct: 248 VGSDVPVLGAVTYDRDGRAVQSIEYRSSGVIFDIQPT-IKNNAIDLKINQQLSNFVKTDT 306

Query: 345 A-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P+   R   T V L SG  +VL GL ++ I + + G   L K    G L      
Sbjct: 307 GVNQSPTLIKRDIVTDVTLKSGDIVVLGGLAENKITEGETGFSFLPK----GIL-SGRSK 361

Query: 404 NREETEIFIAA 414
           +  +T+I I  
Sbjct: 362 SNSKTDIVILL 372


>gi|330944277|gb|EGH46345.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 492

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 194 NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 253

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 254 LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 313

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 314 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 373

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 374 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 433

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 434 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 489

Query: 418 L 418
           +
Sbjct: 490 V 490


>gi|33864362|ref|NP_895922.1| general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
 gi|33641142|emb|CAE22272.1| possible general (type II) secretion pathway protein D precursor
           [Prochlorococcus marinus str. MIT 9313]
          Length = 774

 Score =  101 bits (251), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/230 (17%), Positives = 82/230 (35%), Gaps = 24/230 (10%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G   +  G          A+      +     +        +F   L A   ++  + +A
Sbjct: 519 GSVATNGGRGPIVYDVTTAESSTTSAAATRTPNPALNYPDQAFYDFLRAQIISSNTKVMA 578

Query: 274 EPTLT------AISGQSASFTSGGQHLYKTVSSSTGATSVT-----------THDYGVVL 316
            PTL       +ISG+     +    +       T    V              + G+ L
Sbjct: 579 SPTLILSESPESISGEIGRSKANEAQVSIGDKIITSYKIVQDANGNAYCEAGFDNAGLTL 638

Query: 317 H-FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTT------VELPSGGTIV 369
                 +   G +   ++ ++S  V    +       VR  ++       V +  G T++
Sbjct: 639 GAMVSKIDDNGFVTFTLEPDLSAVVGQPISTGGKCGDVRTVNSRRLETGAVRVRDGQTLI 698

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L G++ D   ++    P+L  IP++G  FR+S  +R++ E+ I  TP ++
Sbjct: 699 LTGVISDSDTEVVTKWPILGDIPLIGQFFRSSSGSRKKNELVIMVTPRII 748


>gi|146343920|ref|YP_001201776.1| putative type II and type III secretion system pilus protein
           [Pseudomonas fluorescens SBW25]
 gi|146187732|emb|CAM96060.1| putative type II and type III secretion system pilus protein
           [Pseudomonas fluorescens SBW25]
          Length = 550

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 96/294 (32%), Gaps = 19/294 (6%)

Query: 146 VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           ++ G+  + +       +    +  +G          + +          V ++V   +V
Sbjct: 254 MIGGLGDSEEAPAYIEGIRSVGIVTAGGKPSKMKVLDRYLKRAIEESTKVVNVQVEAYDV 313

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF---SVKGVLDRFSFETVLHA 262
                KQ G   ++  +S+        +F          F          + +   ++  
Sbjct: 314 LLTDGKQKGIDWNLLVNSTVSGNPLGLNFFNTSPKSDDPFWNVQGTYTSSKVTASALVKF 373

Query: 263 LERATAIRTLAEPTLTAISGQSA--------SFTSGGQHLYKTVSSSTGATSVTTHDYGV 314
           LE+   +    +P +T  +G  A        ++    +       + T    +     GV
Sbjct: 374 LEQYGRVELKDQPNITVRNGVPAQIYAGEELTYIVDVEQSQDESGNVTVTPKLGRLKVGV 433

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAG------DMPSYRVRKADTTVELPSGGTI 368
            L  T  VL   ++ + +   +S               + P   +++  T +   SG ++
Sbjct: 434 TLSVTVRVLDNDQLLVDVWPVISNLNDPDTINIGDYSFNTPRVNLKEFSTQLITSSGQSV 493

Query: 369 VLAGLLKDDIQQLKEGIPL--LSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            L GL+   + +    +P   L    IL  L +    + E  E+ +  TP LV+
Sbjct: 494 HLGGLITKRMNEAMRQLPWQNLVTKAILNPLTQGINNSLERRELVLVVTPTLVQ 547


>gi|213972108|ref|ZP_03400200.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
 gi|302061568|ref|ZP_07253109.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302131100|ref|ZP_07257090.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|213923146|gb|EEB56749.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 578

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/245 (15%), Positives = 77/245 (31%), Gaps = 23/245 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV   V + E       Q+    S    S       +       +S        G++D
Sbjct: 336 TQQVLFNVKVFEATLTDTDQLALNWSAVYKSLSTKWGLSLSNSVPGISSSAISGSVGIVD 395

Query: 253 RFS-----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
             +        ++ A+     I  +  P++T ++ Q A    G    Y     +    SV
Sbjct: 396 TANSAWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASV 455

Query: 308 TTHDY--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRV 353
            +           G  +   P ++          I +  +          ++  +P+Y  
Sbjct: 456 GSSTAITPGTITSGFNMTLQPRLMDDDEMLLMITINMSSKPTFQPFTSNGSSVQIPNYDA 515

Query: 354 RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           +     V+L SG T++L+G   D++    + I      P    L         ++ + + 
Sbjct: 516 KSLSPKVKLRSGQTLILSGF--DELSDNTDKI-GTGS-PGFFGLGGGRTRMSSQSFLVVL 571

Query: 414 ATPFL 418
            TP +
Sbjct: 572 ITPIV 576


>gi|167947039|ref|ZP_02534113.1| Type II secretory pathway component PulD-like protein [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 290

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/227 (20%), Positives = 85/227 (37%), Gaps = 25/227 (11%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS 223
           +ET +         +   ++ +  +  +   QV ++VTIAEV      Q G   S+ GS 
Sbjct: 65  AETGMIAVRTTAKKHQEIERFLTQVLDSARRQVLIEVTIAEVVLSDHFQAGVDWSLIGSD 124

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
            G + +          +     ++ G ++       L ALE    ++ L+ P +  ++ Q
Sbjct: 125 IGINSAMIGQ--NLLQAPLASLTLSGNINGDPLNLTLKALENFGKVKVLSSPKIMTLNNQ 182

Query: 284 SASFTSGGQHLY------------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            A      Q +Y                + T  T+V T   G+VL  TP V     + L 
Sbjct: 183 PAVLRVTDQRVYMITDVEVEEDQETKTKTRTFETTVNTVPEGLVLTVTPYVDQFDTVMLN 242

Query: 332 IQTEVS-----------EPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           I+  +S           E         +P  ++R+ +T + + SG +
Sbjct: 243 IRPTISRILGFVEMRNQELDEANVINRVPQIQLREMETVLRVSSGDS 289


>gi|253990944|ref|YP_003042300.1| type III secretion system EscC protein [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253782394|emb|CAQ85558.1| Putative type III secretion system EscC protein [Photorhabdus
           asymbiotica]
          Length = 491

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 48/267 (17%), Positives = 92/267 (34%), Gaps = 12/267 (4%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVM---NLLNIAG-EDQVTLKVTIAEVR 206
           V   +  +RA ++      +    +   +S  +V+   N L + G   ++TL   IA + 
Sbjct: 214 VNDGEMLERAYKVKLNEGDKQKLEEAEKTSKVQVIPGTNALLVRGTPGEITLAKRIASMI 273

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DFSVKGVLDRFSFETVLHALER 265
               KQ+ F   +   ++  ++ F AD      S G  D           F     A+  
Sbjct: 274 DVKGKQLMFSLKVYDVAADRTEHFGADSSMLNGSTGIYDILTLPYSATKDFLNNFQAMYS 333

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
               R++    L  +      F          V  S         +    L+ T  VL  
Sbjct: 334 NGLARSVYSTNLLILENHQGHFGKKDTITVNLV--SNKEVESLKIEADNSLYVTGRVLPS 391

Query: 326 GRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           G +      +    +  +          P    +   +   +    TI+L G    +   
Sbjct: 392 GGVQAKLEYIEEHFDDDKSSNQNGVSQPPKISSQSLSSEAFIKPNETIILGGFDNIETLS 451

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREE 407
            + G+P+LS IP+LG +F+N++  + +
Sbjct: 452 SESGVPVLSSIPLLGEIFKNTKLTKRK 478


>gi|237801977|ref|ZP_04590438.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331024835|gb|EGI04891.1| type II and III secretion system protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 300

 Score =  100 bits (249), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 29/301 (9%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN------LLNIAGEDQV 196
           +T +L  +   ++           +LS S            + N        N A   QV
Sbjct: 2   NTSILTDIQSNVRAMLSTSPPGRMYLSPSTGTLTVTDRPDVLANVETYLAKTNHAITQQV 61

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS- 255
              V + E       Q+    +   +S       +       +S        G++D  + 
Sbjct: 62  LFNVKVFEATLTDTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANS 121

Query: 256 ----FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  ++ A+     I  +  P++T ++ Q A    G    Y     +    SV +  
Sbjct: 122 AWAGSNAIIQAIAEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSST 181

Query: 312 Y--------GVVLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
                    G  +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 182 AITPGTITSGFNMTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 241

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP 
Sbjct: 242 PKVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSVLVVLITPI 297

Query: 418 L 418
           +
Sbjct: 298 V 298


>gi|91775810|ref|YP_545566.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
 gi|91709797|gb|ABE49725.1| type II and III secretion system protein [Methylobacillus
           flagellatus KT]
          Length = 395

 Score =  100 bits (248), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 103/274 (37%), Gaps = 27/274 (9%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNI------AGEDQVTLKVTIAEV 205
           R  ++    ++ +   +     +     + +   ++L           ++V +K  I EV
Sbjct: 133 RDQKEIGDLLKFAGAEVQAITDDVVFYRADESKQDMLKTILADLDRPANEVVVKAYIYEV 192

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALER 265
              +            ++   + S      G  +  G   S +  L   + + ++ A + 
Sbjct: 193 TNTVRD---------LNAISAAVSLLNSRLGITIENGATQSNQLKLSLPNIDVLISAFDS 243

Query: 266 ATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTPT 321
               + ++ P+L   +G+++ F+ G +          ++     S+     GV+L  TP 
Sbjct: 244 DNRFKQVSAPSLRVKNGKNSRFSVGTETPTIASTTQTNNGNPVQSIIYRPSGVILEITPK 303

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
           +L+   I L I  ++S            P+   R+  T V    G  I+L GL +  + +
Sbjct: 304 ILAE-TIELDITQQISSFQPTTTGVNQSPTLLKREIKTVVNTRDGELILLGGLNESRLSK 362

Query: 381 LKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            ++G+  L   P    LF  +  + E+++I +  
Sbjct: 363 QRQGLSFL---P---RLFNANTDSDEKSDILLVM 390


>gi|325529582|gb|EGD06465.1| Type II secretory pathway, component PulD [Burkholderia sp. TJI49]
          Length = 397

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 65/310 (20%), Positives = 113/310 (36%), Gaps = 36/310 (11%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            RD+A+L  TL+            V+  V + G   +   S +    S            
Sbjct: 107 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 162

Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            + +  + + LL    +    +V ++  + EV+             TG S+G + S AA 
Sbjct: 163 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQ-------------TGDSNGSAFSLAAS 209

Query: 234 FG---GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                      G  F  +  L    F  VL AL      R +++P+L   SG  A+F+ G
Sbjct: 210 LLKGKLNITLAGNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVG 269

Query: 291 GQHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
            +            S     SV   D GV+ +  P  +    + L +  ++S  V     
Sbjct: 270 AEVPVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTG 328

Query: 346 -GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
             + P+   R+  T+V++     I+L GL ++       G+  L K      LFR++   
Sbjct: 329 VNNSPTLTKRQLTTSVQMRDREVILLGGLTEEKTSDNSTGLSFLPK------LFRSNTSE 382

Query: 405 REETEIFIAA 414
              +EI +  
Sbjct: 383 ASNSEILLVI 392


>gi|294086090|ref|YP_003552850.1| type II secretion PilQ [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665665|gb|ADE40766.1| Type II Secretion PilQ [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 822

 Score =  100 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 84/249 (33%), Gaps = 20/249 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSI--TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           QV +++ +  V +D  +QI     +  +G  +  S++    FG         F++     
Sbjct: 563 QVLIEIFMITVAKDFSRQINSAFRVLPSGGGNDVSEALLYGFGTGIAEARNSFNLNLTSP 622

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
                   + LE     R ++ PT+    G++A  +   +     +  S G       + 
Sbjct: 623 NRELTNFFNFLETNNLARVVSSPTILVADGETAEISRVQKARVSRIEQSAGDNGTVLTNT 682

Query: 313 GVVLHFTPTVLS---------PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVEL 362
            +     P  L             + L ++ E +       +  +          T    
Sbjct: 683 VIDEFLAPFQLRISEVKINRINKTVQLEVELEDTRFAAALSSVTNETDETTDTITTKFWS 742

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPL----LSKI-PILGALFRNSRFNREETEIFIAATPF 417
             G  +VLAGL ++       G+P     L  I PI+G    N   N   +E  I   P 
Sbjct: 743 APGDVVVLAGLTRNSETATTAGVPGTTGALGAISPIIG---GNDGINNNMSETIIFMAPT 799

Query: 418 LVKPVAMRD 426
           ++ P A + 
Sbjct: 800 VIDPSADKQ 808


>gi|260899863|ref|ZP_05908258.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
 gi|308107338|gb|EFO44878.1| protein VcsC2 [Vibrio parahaemolyticus AQ4037]
          Length = 488

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 97/289 (33%), Gaps = 11/289 (3%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKV 184
           +     +   +      +     +   +   RA ++        +     +  N  +   
Sbjct: 189 QATFPGAQSLIAAAITNIGQFKNISDGELVSRAYKVKLSEGDRQNLDEEEKTTNVQALPG 248

Query: 185 MNLLNIAG-EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
            N L + G  D+V L   IA +     +Q+ F   +   S+   ++F  D      S G 
Sbjct: 249 SNALLVRGTPDEVKLAKRIAALIDTERRQLLFSLKVYDVSAERKENFGVDSSWVNGSRGV 308

Query: 244 -DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
            D  V    +   F      L      R + E  L  +  Q   F             S 
Sbjct: 309 YDLVVPPFTETIDFLRNFQVLASNGIARGVYETNLLVLENQQGHFGKKQT--ATIALISN 366

Query: 303 GATSVTTHDYGVVLHFT----PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
                   +    L+ T    P+     RI    ++   +     N+   P    +  ++
Sbjct: 367 RQVETQKIEADNSLYVTGRLLPSGDVQARIQYIEESLDDDEEDSDNSNRPPRVSSQSLNS 426

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            V +  G TI+L G      QQ + GIP+LS IP+LG LF+++   + +
Sbjct: 427 EVYIKPGQTIILGGFDNTVTQQTESGIPVLSSIPLLGELFKSTSEVKSK 475


>gi|327538107|gb|EGF24796.1| protein containing Type II and III secretion system domain
            [Rhodopirellula baltica WH47]
          Length = 1062

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 56/326 (17%), Positives = 95/326 (29%), Gaps = 81/326 (24%)

Query: 173  RNQYANSSSKKVMNLLNIAGEDQ---VTLKVTIAEVRRDILKQIGFQHSITGSSSGPS-- 227
                 +    ++++LL      Q   +T++V    +     +QIG    +    + P   
Sbjct: 719  VVSTTSDVHDQIVDLLESLRRLQNLQITIEVRFITLSDTFFEQIGIDFDLQFDDNAPGLP 778

Query: 228  ----------------------------KSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
                                         S A    G   +         +L        
Sbjct: 779  GDDSGPEITIGLDGDGTPTADLDIRLDQNSGATVPFGAPDAGAISTLGFAILSDIEAYFF 838

Query: 260  LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDY 312
            L A +  +    +  P +T   GQ AS        + T         +      +   D 
Sbjct: 839  LQAAQGDSRTNVMQAPKVTLFDGQIASIQDQTSRPFVTSIVPVVGDFAVAQQPVIVVLDE 898

Query: 313  GVVLHFTPTVLSPGR-IGLRIQTEVSEP-------------------------------- 339
            G  L+    V    R + L +    S+                                 
Sbjct: 899  GTRLNVQGVVSEDKRFVRLTLIPTFSQIGEVNEFTFQGNSTTRNTSNRNVDTNGDGVIDE 958

Query: 340  --------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKI 391
                    V        P++     +TTV +P GGTI+L G+ +    + + G+P LSKI
Sbjct: 959  EDEQEEESVTQGTTVQQPTFAFTTVNTTVSVPDGGTILLGGIKRMSEGRNERGVPFLSKI 1018

Query: 392  PILGALFRNSRFNREETEIFIAATPF 417
            P +  LFRN+   RE   + +  TP 
Sbjct: 1019 PYVSRLFRNTAVGRESRSLMMMVTPR 1044


>gi|134093313|ref|YP_001098388.1| putative secretion pathway protein [Herminiimonas arsenicoxydans]
 gi|133737216|emb|CAL60259.1| putative bacterial secretion pathway protein [Herminiimonas
           arsenicoxydans]
          Length = 656

 Score = 99.8 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 95/275 (34%), Gaps = 20/275 (7%)

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR--------D 208
           +      +E     +        ++    N     G   + + V +   +         +
Sbjct: 306 ADNQASTAEPLAVPAAAVPVLTPAADATGN-----GPRMLLIDVVLLSTQELMATSKGIN 360

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
           +L  +  Q     +++      +    G         +    +   S+   + A   ++ 
Sbjct: 361 LLSALTLQLGSGSTAAYSRIVTSNSLNGAKPDVSTAITRAVSIPALSYSLNI-ANANSSV 419

Query: 269 IRTLAEPTLTAISGQSASFTSGGQ---HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
              LA PTL AI G  + F SG      L  T              +G+ L  TPT L  
Sbjct: 420 NEVLARPTLAAIEGLPSEFFSGTNLSAGLVSTSQQGGTTIVPLDKRFGIKLSVTPTFLPQ 479

Query: 326 GRIGLRIQTEVSEPVIGVNAGDMP---SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           GR+ L+I+ + +          +          A+  V +  G T++L+GL +      +
Sbjct: 480 GRVQLKIEAQRTALNASSETSRVAYQIEIGELTANANVVMNLGETLLLSGLSEKTRTSTR 539

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           +G+P L  +P++  LF N + N  +    I  TP 
Sbjct: 540 DGVPGLQDVPVVQYLFSNKKTNDLQRSALILITPR 574


>gi|145589562|ref|YP_001156159.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047968|gb|ABP34595.1| type II and III secretion system protein [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 759

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/244 (17%), Positives = 83/244 (34%), Gaps = 16/244 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
               ++   +     +     G       +    S+SF +       S  G      +  
Sbjct: 423 PKMASIDAVLIRTIDNQSSSYGINLLTGLTMFAGSQSFRSTGSVGGSSVSGVVQNSVIGI 482

Query: 253 RFSFETVLH------------ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
             +    ++            A   ++  + +A PTLTA+    ++F SG          
Sbjct: 483 GTATSATINSVSGLVSYSLNIANSTSSNSQVIARPTLTALDRIPSTFYSGAVITAGLNGG 542

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK----A 356
                 +T    GV L  TPT +    + L ++   S            +  V +     
Sbjct: 543 GVSGAQITNIPTGVSLSVTPTFVDEESMMLAVKVSRSYVTSQNAGYGGFNASVSQDQHAV 602

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V++  G T++L GL    +  L++G+P+L  IPI+   F   +  +    + +  TP
Sbjct: 603 TANVKIKYGETLILDGLSSRAVSGLQDGVPVLQDIPIIQYFFNQKQQQQYSENVVVLVTP 662

Query: 417 FLVK 420
             V+
Sbjct: 663 RKVQ 666


>gi|218534703|ref|YP_002424465.1| PilN protein [Yersinia pseudotuberculosis]
 gi|218473172|emb|CAQ76600.1| PilN protein [Yersinia pseudotuberculosis]
          Length = 543

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 19/251 (7%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N  N     QV L V +  V +    Q+G   +   +S     S  + F     S    
Sbjct: 297 INDRNTELNRQVVLNVKVYSVEKRRQDQLGIDWNAVFTSGSIGGSLTSAFTEASTSAMTG 356

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                     + +  ++AL     +  + +   T  +  +     G Q  Y +  ++   
Sbjct: 357 GLSILDGKFANSKAFVNALAEQANVSLVTQQASTTTNMSAVPVQVGTQQDYASQVNTDST 416

Query: 305 TSV--------TTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEP------VIGVNAGDMP 349
            +V        +T   G  +   P ++    +I L+    +S+         G ++ ++ 
Sbjct: 417 ANVGTSTSITKSTITTGFNMTMLPYIMPKSSQIQLQFSINMSDDPTSRTFTSGESSIELM 476

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
             R++  +  V L SG T+VL+G  + +    K+G+         G L   +   +++T 
Sbjct: 477 KTRLKTFNQRVILSSGQTLVLSGFQQVNNTGSKQGV---GSASFFG-LGGGANGQKDDTM 532

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 533 LVILITPTLLR 543


>gi|167589098|ref|ZP_02381486.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           ubonensis Bu]
          Length = 419

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/245 (19%), Positives = 79/245 (32%), Gaps = 25/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V  +     G   S+   +          F    ++   D S   +  
Sbjct: 172 SRQVLLNVTVLSVSLNAGDAYGIDWSLVYKTMSAGFGVTNPFTPVALTSPADLSATVLSP 231

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V  
Sbjct: 232 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVAKQTGYLASVSTTNTANVGS 291

Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351
                  T   G  +   P VL  G + L+  T +S              G      P  
Sbjct: 292 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVTSSEAKGATKIQTPDV 351

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R     + + SG T+V++G    +    + G+      P + AL       R    I 
Sbjct: 352 DMRNFLQRIAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRTREVIV 407

Query: 412 IAATP 416
           I  TP
Sbjct: 408 ILITP 412


>gi|317968183|ref|ZP_07969573.1| general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CB0205]
          Length = 729

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/206 (18%), Positives = 76/206 (36%), Gaps = 16/206 (7%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            S +   +   + ++ G   +V G            AL  A+  R  A  +   +  Q  
Sbjct: 516 ASPTLIINENSEPIASGAAVTVGGSGTA--------ALNTASIGRPFANESFVTVGAQEI 567

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV-- 343
              +         +S           +G  +     +   G +   +  E+S  +     
Sbjct: 568 VSYTVQAGQNGAPNSCQPEFGTAGLTFGARVS---RIDDNGFVTFSMSPEISAVIATDVR 624

Query: 344 --NAGDMPSYRVRKADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
               G + +   R+ DT  V +  G T++L G++ D  Q +    P+L  IP +G  FR+
Sbjct: 625 IEGCGTVNTLTTRRLDTGEVRVRDGQTLILTGVISDYDQAVVRKWPVLGDIPFVGQFFRD 684

Query: 401 SRFNREETEIFIAATPFLVKPVAMRD 426
           S   RE+ E+ I  +P +++     +
Sbjct: 685 SINRREKRELVILVSPRIIRDDNGGN 710


>gi|289678006|ref|ZP_06498896.1| outer-membrane type III secretion protein HrcC [Pseudomonas
           syringae pv. syringae FF5]
          Length = 305

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 48/144 (33%), Gaps = 6/144 (4%)

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEV 336
           +  Q A               S    ++     G  L  TP  L      ++ L +  E 
Sbjct: 1   LENQPAVIDFSRTEYLTAT--SERVANIEPITAGTSLQVTPRSLDHDGKPQVQLIVDIED 58

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
            +  I       PS R     T   +   G++V+ G    +       +PLL  IP +G 
Sbjct: 59  GQIDISDINDTQPSVRKGNVSTQAVIAEHGSLVIGGFHGLEANDKIHKVPLLGDIPYVGK 118

Query: 397 -LFRNSRFNREETEIFIAATPFLV 419
            LF++      + E     TP L+
Sbjct: 119 LLFQSRSRELSQRERLFILTPRLI 142


>gi|172064947|ref|YP_001815659.1| type IVB pilus formation outer membrane protein [Burkholderia
           ambifaria MC40-6]
 gi|171997189|gb|ACB68106.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MC40-6]
          Length = 577

 Score = 98.3 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 75/245 (30%), Gaps = 19/245 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
           A  +  +  + S          ++V   ++        QV + VT+  V        G  
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMDQQNRVLARQVLINVTVLSVTLSAADSYGIN 360

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 + G        F     +        +       S   V+ AL     +     
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
            ++T ++ Q        Q  Y    S+T   ++         T   G  L   P +L  G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480

Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I ++  + +S  V             +P+   R     + + SG T+V++G      Q 
Sbjct: 481 TIMMQFYSNISSLVNLAPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540

Query: 381 LKEGI 385
            ++G+
Sbjct: 541 NRQGV 545


>gi|258545349|ref|ZP_05705583.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
 gi|258519452|gb|EEV88311.1| type IV pilus secretin PilQ [Cardiobacterium hominis ATCC 15826]
          Length = 111

 Score = 98.3 bits (243), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 2/95 (2%)

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           + + +     E    V+     S+        T V + +G TIVL G+ K       E +
Sbjct: 2   VDMELNINNDELGNNVSVAGQTSFTKNTSGVKTNVLVDNGETIVLGGVYKQRQTAKTEKV 61

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           PLL  IP++G  F+ +    E+ E+ I  TP +V 
Sbjct: 62  PLLGDIPVIGNAFKKNTRAFEKNEMLIFVTPRIVD 96


>gi|187736127|ref|YP_001878239.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
 gi|187426179|gb|ACD05458.1| type II and III secretion system protein [Akkermansia muciniphila
           ATCC BAA-835]
          Length = 833

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 56/382 (14%), Positives = 105/382 (27%), Gaps = 122/382 (31%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH----------SITGSSSGPSKSFA 231
           ++++         QV +  T  EV +  L+++GF               G +      + 
Sbjct: 446 EELVAARTAEQPLQVVVSATFLEVNQTDLEELGFNWIVNLNLDPTKWFMGGAGTDKNDYN 505

Query: 232 ADFGGKFVSEGGDFSVKGVLDRF------------------------------------- 254
                   +  G  +  GV+                                        
Sbjct: 506 NSVLDSAANVAGAVAPAGVVGGLRSGNQVFTEDSIDSMIERGTSARSSDATYVPGGAPSI 565

Query: 255 ----------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
                         ++  L +      +  P++    G+ A+F SG + +Y T       
Sbjct: 566 VTLRGMWSHADITMIMRGLSQKKGTDIMQHPSVIVRPGEKATFFSGRELIYPTEYDPPEV 625

Query: 305 TS------------------------------VTTHDYGVVLHFTPTVLSPGR--IGLRI 332
            +                                T   G + +   T +S  +  + + +
Sbjct: 626 PNSTGNNNDWGDNDNNGGGIPVMPMTPAHPSAFETRQLGTIFNVEVTGISDDKSIVEMTV 685

Query: 333 QTEVSEPVIGVNAGD----------------------------MPSYRVRKADTTVELPS 364
             E+ +    +N G                              P +  R+    V + +
Sbjct: 686 VPEIVDFDGFINYGTSLFVPMVSQEKDAKEEVVMVKTSDNFILQPVFSTRRLTAPVRIAT 745

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--- 421
           G T+V+  L K      ++ IP+L  IP +G LFR+     +   I I     +V P   
Sbjct: 746 GNTLVIGALKKSTSITYEDKIPVLGDIPWVGRLFRSKGSKEQRKAIIIMVKAEVVDPGGK 805

Query: 422 -VAMRDLSRPDDHYSVEDDAKA 442
            +   D S PDD      DA  
Sbjct: 806 KLYTPDTSIPDDEV-PAGDASL 826


>gi|170698379|ref|ZP_02889453.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria IOP40-10]
 gi|170136718|gb|EDT04972.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria IOP40-10]
          Length = 577

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
           A  +  +  + S          ++V   +         QV + VT+  V        G  
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 + G        F     +        +       S   V+ AL     +     
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
            ++T ++ Q        Q  Y    S+T   ++         T   G  L   P +L  G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480

Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I ++  + +S  V             +P+   R     + + SG T+V++G      Q 
Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540

Query: 381 LKEGI 385
            ++G+
Sbjct: 541 NRQGV 545


>gi|167840260|ref|ZP_02466944.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis MSMB43]
          Length = 423

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 49/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    ++   D S   +  
Sbjct: 175 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTNPADLSATVLSP 234

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV-- 307
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V  
Sbjct: 235 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 294

Query: 308 ------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----------VIGVNAGDMPS 350
                  T   G  +   P VL  G + L+  T +S               G      P 
Sbjct: 295 STALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVSSSTGGSGAARIQTPD 354

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 355 VDMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GTPKMIALGGGYEAQRAREVI 410

Query: 411 FIAATP 416
            I  TP
Sbjct: 411 VILITP 416


>gi|15667831|gb|AAL05518.1|AF399919_5 PilN [Escherichia coli]
          Length = 539

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 38/242 (15%), Positives = 77/242 (31%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV L V I  +R+   +Q G   +   S      S  + F                  
Sbjct: 302 KRQVVLNVEILSIRKTRNEQAGIDWNAVFSDRTLGLSLGSTFTSAASDAITGGVSIVDGK 361

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  + + +    +          Q  Y    ++    +V     
Sbjct: 362 LTGSKAFLKALSSQGDVSVVTQNSAVTKNLTPVPMQIANQQSYIESVTTDTTANVGSSTS 421

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +L   +       + L  +  +     G +   +P+  ++  +
Sbjct: 422 LNAATITTGFNMTLLPFILPDSQTLQLLYSMSLSDKPVIENYESGGSKAQLPNVDLKTIN 481

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            TV+L SG T++++G  +   +  K+G+      P    L   S          +  TP 
Sbjct: 482 QTVDLKSGQTVIISGFQQSGRRSGKQGV----GTPGFFGLGGGSTVKTATPFSVVLITPN 537

Query: 418 LV 419
           ++
Sbjct: 538 II 539


>gi|167838357|ref|ZP_02465216.1| putative bacteriophage-related lipoprotein [Burkholderia
           thailandensis MSMB43]
          Length = 420

 Score = 97.9 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               +V ++  + EV                S+   +    +        +    +    
Sbjct: 202 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 252

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
                 +  + AL   +  + ++ P +  +SG+      G Q   +       SS T   
Sbjct: 253 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGEHVRLNVGQQVPTQSSVSYQGSSGTPVQ 312

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           S+T  D G++    PTV+    I L+++ E+S+ V         P+   R+  T   L  
Sbjct: 313 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLRD 371

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G  +VL GL++D     + G   L   P   + F     +++ TE+ +  
Sbjct: 372 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 415


>gi|115360623|ref|YP_777760.1| type IVB pilus formation outer membrane protein [Burkholderia
           ambifaria AMMD]
 gi|115285951|gb|ABI91426.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria AMMD]
          Length = 577

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 74/245 (30%), Gaps = 19/245 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
           A  +  +  + S          ++V   +         QV + VT+  V        G  
Sbjct: 301 AGSVITSPATGSIAVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAADSYGIN 360

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 + G        F     +        +       S   V+ AL     +     
Sbjct: 361 WHAVYQALGTQFGITTAFTSMIQNPSELSASVITPSSRASSTTAVIDALSTQGTVHRKTS 420

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGVVLHFTPTVLSPG 326
            ++T ++ Q        Q  Y    S+T   ++         T   G  L   P +L  G
Sbjct: 421 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 480

Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I ++  + +S  V             +P+   R     + + SG T+V++G      Q 
Sbjct: 481 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDQD 540

Query: 381 LKEGI 385
            ++G+
Sbjct: 541 NRQGV 545


>gi|329847987|ref|ZP_08263015.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
 gi|328843050|gb|EGF92619.1| bacterial type II and III secretion system family protein
           [Asticcacaulis biprosthecum C19]
          Length = 545

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 51/274 (18%), Positives = 94/274 (34%), Gaps = 6/274 (2%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIA-GEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           E +     +         ++  V +   +    DQ+++ V I   +      IG      
Sbjct: 213 EAAAPMHVRISDLVRTEDAATPVSDGPEVPVAPDQISVDVAIILSQTSQRDSIGINLLDG 272

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPTLTA 279
            ++    +S     G    +     +V   +        ++   R     + +A P LTA
Sbjct: 273 LTAQYGLQSQRTTTGDAQGNRNMQRTVTEAISIPQLTYNMNLFNRFGQYYQVVARPMLTA 332

Query: 280 ISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP 339
             G+ A F  G     K   +    + + T D G  +  TP  ++     LRI+   S  
Sbjct: 333 YRGEPADFFVGRS--AKVAVTGVNFSQLETIDIGTQIKVTPVEITATGTRLRIEVTRSFL 390

Query: 340 VIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                     S     +   TTVE+  G T++L+GL +          PL+  +P++G+ 
Sbjct: 391 SGEPAGNFNESLNTWRQTVSTTVEVAFGTTLILSGLSESVRDSSTTKTPLVGDVPVVGSA 450

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRDLSRPD 431
           F       +   + +  TP      A    +RP 
Sbjct: 451 FNRRITTDKRDAVLVLVTPSPSMAFAGPQWARPA 484


>gi|254262815|ref|ZP_04953680.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1710a]
 gi|254213817|gb|EET03202.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1710a]
          Length = 589

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582


>gi|269469298|gb|EEZ80806.1| Type II secretory component HofQ [uncultured SUP05 cluster
           bacterium]
          Length = 85

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 31/75 (41%)

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +   P+   R+  TT+ +     +V+ G+           +P    +P++G LF   + +
Sbjct: 11  SNTAPAINKREITTTLLVKDNTIVVIGGVFTQTTVDATNKVPFFGDLPLIGGLFSYKKDS 70

Query: 405 REETEIFIAATPFLV 419
               E+ I   P ++
Sbjct: 71  DVRKELLIFLAPRII 85


>gi|281355619|ref|ZP_06242113.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318499|gb|EFB02519.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 540

 Score = 97.5 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 74/464 (15%), Positives = 144/464 (31%), Gaps = 89/464 (19%)

Query: 65  DVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLE 124
           + + V  + P+ A +  ++ R + +       A       DG       ++   D   L 
Sbjct: 101 NAKRVDQNQPSVAALKFNNGRKLLIV-----SAEACRFEDDGYGESIDKLVERLDQPGLT 155

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
            +  R      I    ++    L  MV          E+  + +     N          
Sbjct: 156 ASSGRP---KFIYFPKINSAATLKKMVS---------EVGASAIDVEFDNGVDKLIVDGG 203

Query: 185 MNLLNIAGE------------------DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
           +N L +A                     ++  +  + E+  +   +IG       ++ G 
Sbjct: 204 LNALFVAAPFWSWKHISNMLAQYDRPIPEIRFRYKVVEIFAENDDKIGLDFQSWKNNDGA 263

Query: 227 SK---------SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
                      ++A+ FG    + G   +     +       +  L      R L    L
Sbjct: 264 DFFSAGGRFRSNWASTFGAGVNNSGSSKTEFFNFNPKWNSKYIDFLTSRGKARVLTSGVL 323

Query: 278 TAISGQSASFTSGGQHLYKTVSSS----------------------------TGATSVTT 309
            A +  + S   G    Y  VS                               G   +T 
Sbjct: 324 NAKNRTTTSINVGSGLFYDDVSQKIEPGNTGRLPAPFAGEPDVPDAGKLEIRKGQQQITK 383

Query: 310 HDYGV--VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGG 366
              G    L     +++     L++  E S  +IG ++   P     + +T V++  SG 
Sbjct: 384 VGEGFRFSLDLVEPIVTANSTTLKLHAE-SVSLIGWDSSGEPRLNKSEIETEVQIGNSGK 442

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
             V+ GL K DI +   G+PLL  +P+LG LF     + ++++I I          A  +
Sbjct: 443 NFVIGGLRKFDIVRGVAGVPLLKDLPLLGWLFSTESESTKKSQIVIL---------ASAE 493

Query: 427 LSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIG 470
            S P D      + +A    ++ +       + +    ++   G
Sbjct: 494 YSTPFDPV--PTEIQANV-GKIVEDVRAGVRNPLNNLGFE-QYG 533


>gi|190570911|ref|YP_001975269.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|190357183|emb|CAQ54599.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
          Length = 488

 Score = 97.5 bits (241), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 56/430 (13%), Positives = 127/430 (29%), Gaps = 100/430 (23%)

Query: 57  VIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
            I +   V V+D+L+      ++   S   + +  K  G   + L   +  +++      
Sbjct: 76  SINVDEKVPVKDLLI------EIGKLSDINLDIDPKISGNITLKLKDKNINEVIQNIANS 129

Query: 117 ---ERDIAHLEMTLRRFIADSN------IRV-EMVSDTVVLHGMVRTIQDSQRAVEL--- 163
                 + +  + + + +  +       I +        V+ G V +    +   +    
Sbjct: 130 AKLRYSMNNGVIRIEQDLPYAQNYYVDFINIQHSAQSNFVVSGNVTSSDADRNVRKSQYS 189

Query: 164 -----------------------------SETFLSQSGRNQYANSSSKKVMNLLNIAGED 194
                                         E  +      +  + + ++ +N +      
Sbjct: 190 SDLWSSLEKGLNAIMDVNGVDDGEFLSSNREAGVIILNARKDIHKAVEEYINKVKKLASS 249

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  I EV  D     G   +   + +    +  +             S+  ++   
Sbjct: 250 QVMIEAKIVEVVLDDKYLSGINLNDLHNKTKSITNQDS-------------SITSLVMNS 296

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA--------TS 306
             E ++  L++      ++ P + AI+ Q A  +    H+Y T               T 
Sbjct: 297 DLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTSDIQKDTGNSNHALITK 356

Query: 307 VTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---------------GDMPS 350
           + +   GVVL   P++      I + I   +S                        D+P 
Sbjct: 357 MNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIEYVAQQNKMKLNSDIPI 416

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET-E 409
              R+  +T+++ SG  +V+ GL++                     L         +T E
Sbjct: 417 IETREMHSTLKIKSGEVMVIGGLIEHRKDNQ--------------NLLHQKSKKLAKTVE 462

Query: 410 IFIAATPFLV 419
             I     +V
Sbjct: 463 TVIFLKATIV 472


>gi|270487709|ref|ZP_06204783.1| conserved domain protein [Yersinia pestis KIM D27]
 gi|270336213|gb|EFA46990.1| conserved domain protein [Yersinia pestis KIM D27]
          Length = 171

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 49/136 (36%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  K+I + +    I++V  ++  V VS    AD  +    ++ ++ K  G A   
Sbjct: 10  FENSANAKQIYLPIGGSHIIKVQEEIDTVFVSAAKTADYEIVDNNSVIIYAKKEGLAEFT 69

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   + + +    +L+   I      +R    DS I +  + ++ +L G   T +     
Sbjct: 70  LFNKNHQPISKTRVLVNNTINDAYRRIRTEFPDSKIEINKIGESYILTGSAETEEAKDTI 129

Query: 161 VELSETFLSQSGRNQY 176
             +     +     + 
Sbjct: 130 ASIVGEATASKKEKRE 145


>gi|226198442|ref|ZP_03794010.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pakistan 9]
 gi|225929499|gb|EEH25518.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pakistan 9]
          Length = 590

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583


>gi|254194313|ref|ZP_04900745.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei S13]
 gi|254301386|ref|ZP_04968830.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 406e]
 gi|157811498|gb|EDO88668.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 406e]
 gi|169651064|gb|EDS83757.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei S13]
          Length = 590

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583


>gi|254186932|ref|ZP_04893448.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pasteur 52237]
 gi|157934616|gb|EDO90286.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei Pasteur 52237]
          Length = 590

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583


>gi|53722623|ref|YP_111608.1| type IV pilus biosynthesis protein [Burkholderia pseudomallei
           K96243]
 gi|52213037|emb|CAH39075.1| putative type IV pilus biosynthesis protein [Burkholderia
           pseudomallei K96243]
          Length = 589

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582


>gi|53716205|ref|YP_106188.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
           ATCC 23344]
 gi|124381791|ref|YP_001025775.1| type IVB pilus formation outer membrane protein [Burkholderia
           mallei NCTC 10229]
 gi|126447055|ref|YP_001077859.1| type IVB pilus formation outer membrane protein [Burkholderia
           mallei NCTC 10247]
 gi|126457943|ref|YP_001076206.1| type IVB pilus formation outer membrane protein [Burkholderia
           pseudomallei 1106a]
 gi|167003979|ref|ZP_02269757.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei PRL-20]
 gi|237509279|ref|ZP_04521994.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei MSHR346]
 gi|242311526|ref|ZP_04810543.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106b]
 gi|254205031|ref|ZP_04911384.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei JHU]
 gi|254359153|ref|ZP_04975425.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei 2002721280]
 gi|52422175|gb|AAU45745.1| putative type IV pilus biogenesis protein PilN [Burkholderia mallei
           ATCC 23344]
 gi|126231711|gb|ABN95124.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106a]
 gi|126239909|gb|ABO03021.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei NCTC 10247]
 gi|147754617|gb|EDK61681.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei JHU]
 gi|148028340|gb|EDK86300.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei 2002721280]
 gi|235001484|gb|EEP50908.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei MSHR346]
 gi|242134765|gb|EES21168.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 1106b]
 gi|243060570|gb|EES42756.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei PRL-20]
 gi|261826504|gb|ABM99280.2| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei NCTC 10229]
          Length = 590

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583


>gi|134282150|ref|ZP_01768856.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 305]
 gi|134246679|gb|EBA46767.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 305]
          Length = 589

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 309 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 368

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 369 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 428

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 429 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 488

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 489 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 548

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 549 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 582


>gi|126443441|ref|YP_001063251.1| type IVB pilus formation outer membrane protein [Burkholderia
           pseudomallei 668]
 gi|126222932|gb|ABN86437.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 668]
          Length = 590

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 310 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 369

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 370 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 429

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 430 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 489

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 490 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 549

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 550 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 583


>gi|53720957|ref|YP_109943.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
 gi|52211371|emb|CAH37360.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei K96243]
          Length = 458

 Score = 97.1 bits (240), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               +V ++  + EV                S+   +    +        +    +    
Sbjct: 240 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 290

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
                 +  + AL   +  + ++ P +  +SG+      G Q   +       SS T   
Sbjct: 291 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 350

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           S+T  D G++    PTV+    I L+++ E+S+ V         P+   R+  T   L  
Sbjct: 351 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 409

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G  +VL GL++D     + G   L   P   + F     +++ TE+ +  
Sbjct: 410 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 453


>gi|254253693|ref|ZP_04947010.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
 gi|124898338|gb|EAY70181.1| Type II secretory pathway component PulD [Burkholderia dolosa
           AUO158]
          Length = 578

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/245 (14%), Positives = 72/245 (29%), Gaps = 19/245 (7%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQ 216
              +  +  + S          ++V   +         QV + VT+  V        G  
Sbjct: 302 VGSVVTSPATGSISVTDTPDVLERVGEFMEQQNRVLARQVLINVTVLSVTLSAQDSYGIN 361

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                 + G        F     +        +       S   ++ AL     +     
Sbjct: 362 WHAVYQALGTQFGITTAFTSMIQNPSELSATVITPSSRASSTTAIIDALSTQGTVHRKTS 421

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPG 326
            ++T ++ Q        Q  Y    S+T   ++         T   G  L   P +L  G
Sbjct: 422 ASITTLNDQPVPVQVAEQQGYLAQISTTNTVNIGSQTSLTPGTITTGFNLTVLPHILDDG 481

Query: 327 RIGLRIQTEVSEPV------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQ 380
            I ++  + +S  V             +P+   R     + + SG T+V++G        
Sbjct: 482 TIMMQFYSNISSLVNLVPFGPANQQIQLPTVDTRNFLQRIAVKSGQTLVISGYEGITDLD 541

Query: 381 LKEGI 385
            ++G+
Sbjct: 542 NRQGV 546


>gi|167573379|ref|ZP_02366253.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           oklahomensis C6786]
          Length = 411

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 50/277 (18%), Positives = 86/277 (31%), Gaps = 28/277 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +   N A   QV L VT+  V        G   S+ 
Sbjct: 132 VASPATGSISVTDTPDVLERVAAFMAQQNRALSRQVLLNVTVLSVSLSAGDAYGIDWSLV 191

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   + S   +     F     ++ AL +   +R     ++
Sbjct: 192 YHTLSAKFGIVNAFKPVSLTPTAELSATVLSPTSRFNGTSLLIRALSQQGQVRRKTSASV 251

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
             ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 252 MTLNNQPVPVQVATQVGYLASVSTTNTANVGSSTALTPGSVTTGFNMTLLPHVLDDGTVM 311

Query: 330 LRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           L+  T +S              G      P   +R     V + SG T+V++G    +  
Sbjct: 312 LQFSTNISSLLALKNVASSTGGGAMQIQTPDIDMRNFLQRVAMKSGETLVISGYEGTNDS 371

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             + G+      P + AL       R    I I  TP
Sbjct: 372 LDERGV----GAPKMIALGGGYEAQRAREVIVILITP 404


>gi|134283528|ref|ZP_01770228.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
 gi|134245277|gb|EBA45371.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 305]
          Length = 447

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               +V ++  + EV                S+   +    +        +    +    
Sbjct: 229 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 279

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
                 +  + AL   +  + ++ P +  +SG+      G Q   +       SS T   
Sbjct: 280 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 339

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           S+T  D G++    PTV+    I L+++ E+S+ V         P+   R+  T   L  
Sbjct: 340 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 398

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G  +VL GL++D     + G   L   P   + F     +++ TE+ +  
Sbjct: 399 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 442


>gi|157159048|ref|YP_001462784.1| type II/III secretion system protein [Escherichia coli E24377A]
 gi|157081078|gb|ABV20786.1| type II/III secretion system protein [Escherichia coli E24377A]
          Length = 406

 Score = 96.7 bits (239), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 61/319 (19%), Positives = 108/319 (33%), Gaps = 19/319 (5%)

Query: 112 LDILIERDIAHLEMTLRRFIADSNIR-VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQ 170
           +D +     A  E  L+  +     R VE +   +   G +   Q   +     +T+ + 
Sbjct: 96  VDYIYSHTPAAPEEPLKSLVYTPRYRTVEYLHQALSGLGQLPAAQQPVQGANGEQTWQAV 155

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVTIAEVRRDILKQIGFQHS-ITGSSS 224
           S   ++ ++S    +        + V      + V   EV          Q S   GS  
Sbjct: 156 SSGTRFISASGDVFVFRGTAREVELVRQLLPQIDVRAQEVSV-AGYVFEVQTSERNGSGL 214

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
             +    +      +S          L   S + +       +  + ++ P L  ISG+ 
Sbjct: 215 ALAAELLSGRFSITMSSASGLDNFIRLSTGSVDAMYELFRTDSRFQVVSSPRLRVISGKE 274

Query: 285 ASFTSGGQHLYKTVSSST---GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI 341
           A F+ G      +  S        SV     G +    PTV     IGL I  ++S    
Sbjct: 275 AVFSVGSDVPVLSSVSWQDKVPVQSVEYRSSGAIFRVKPTVTQD-VIGLDIVQQLSNFAK 333

Query: 342 GVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                 + P+   R+  T+V L  G  IVL GL ++   + + G+  L  +      F +
Sbjct: 334 TDTGVNNTPTLIKREVSTSVSLNDGDIIVLGGLAENKTSKARTGLSFLPDV------FGS 387

Query: 401 SRFNREETEIFIAATPFLV 419
               R +T+I +      V
Sbjct: 388 DSDERAKTDIIVVLQARRV 406


>gi|257142072|ref|ZP_05590334.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis E264]
          Length = 586

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    +++  D S   +  
Sbjct: 338 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 397

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 398 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 457

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
                      G  +   P VL  G + L+  T +S  +                   P 
Sbjct: 458 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 517

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 518 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 573

Query: 411 FIAATP 416
            I  TP
Sbjct: 574 VILITP 579


>gi|113955379|ref|YP_731905.1| general secretion pathway protein D [Synechococcus sp. CC9311]
 gi|113882730|gb|ABI47688.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. CC9311]
          Length = 732

 Score = 96.7 bits (239), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 33/163 (20%), Positives = 63/163 (38%), Gaps = 7/163 (4%)

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            AL+ AT  R+ A  +   +  Q     S         +S           +G  +    
Sbjct: 545 SALQTATIGRSKANESFVTVGTQETVNYSVSAGQNGAPNSCQPILGTAGLTFGARVS--- 601

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS---YRVRKADT-TVELPSGGTIVLAGLLKD 376
            +   G +   +   ++      N           VR+ DT ++ +  G T++L G++ D
Sbjct: 602 KIDDNGFVSFSLSPTIAAVTGTQNVEGCGPRSILSVRRLDTGSLRVRDGQTLILTGVISD 661

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              Q     P+L  +P++G  FR S  +R + E+ +  TP ++
Sbjct: 662 RDAQQVRKWPILGDLPLIGQFFRESTRDRAKRELVVLVTPKII 704


>gi|167817938|ref|ZP_02449618.1| putative bacteriophage-related lipoprotein [Burkholderia
           pseudomallei 91]
          Length = 403

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 42/230 (18%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               +V ++  + EV                S+   +    +        +    +    
Sbjct: 185 TAPGEVVVRGWVYEVANTDSAN---------SAWSIAVRLLSGQLRLSSGDTSSDASAMR 235

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGAT 305
                 +  + AL   +  + ++ P +  +SG+      G Q   +       SS T   
Sbjct: 236 FTGPGVDAAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSSGTPVQ 295

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPS 364
           S+T  D G++    PTV+    I L+++ E+S+ V         P+   R+  T   L  
Sbjct: 296 SITYQDAGLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKD 354

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G  +VL GL++D     + G   L   P   + F     +++ TE+ +  
Sbjct: 355 GELVVLGGLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 398


>gi|167566274|ref|ZP_02359190.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           oklahomensis EO147]
          Length = 409

 Score = 96.3 bits (238), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 46/245 (18%), Positives = 77/245 (31%), Gaps = 25/245 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +          F    ++   + S   +  
Sbjct: 162 SRQVLLNVTVLSVSLSAGDAYGIDWSLVYHTLSAKFGIVNAFKPVSLTPTAELSATVLSP 221

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++  ++ Q        Q  Y    S+T   +V +
Sbjct: 222 TSRFNGTSLLIRALSQQGQVRRKTSASVMTLNNQPVPVQVATQVGYLASVSTTNTANVGS 281

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSY 351
                      G  +   P VL  G + L+  T +S              G      P  
Sbjct: 282 STALTPGSVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLALKNVASSTGGGAMQIQTPDI 341

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
            +R     V + SG T+V++G    +    + G+      P + AL       R    I 
Sbjct: 342 DMRNFLQRVAMKSGETLVISGYEGTNDSLDERGV----GAPKMIALGGGYEAQRAREVIV 397

Query: 412 IAATP 416
           I  TP
Sbjct: 398 ILITP 402


>gi|313681304|ref|YP_004059042.1| type ii and iii secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
 gi|313154164|gb|ADR32842.1| type II and III secretion system protein [Sulfuricurvum kujiense
           DSM 16994]
          Length = 481

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 19/240 (7%)

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDR 253
           +++I +V       +G   S+  S +    SF A   G   S G       F +    D 
Sbjct: 239 EISIYDVELKDNYALGIDWSLVPSLAKDGLSFVASATGSLGSAGASAVPLTFGMIMKNDT 298

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--------AT 305
           ++ + +++ALE    + ++  P L  ++G +   T G +  Y +   +T         +T
Sbjct: 299 YNGKALVNALENFGKVESVQRPKLLGLAGTNVKLTDGVEAPYISGIQNTSVGNGTAQVST 358

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIG-----LRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
           +  T   G+ ++    +L    I      +      +   +  N    P    +  + T+
Sbjct: 359 TSATALSGLEINLKSNMLDGTVITDIGLKINDIVGYTSFEVNGNKFSQPQTVTKAINNTM 418

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +  G  IV++GL ++   +   G+P L      G +      +  ++E+ I  TP ++K
Sbjct: 419 RVQPGVPIVISGLFRNKSDKGWNGLPGLGDS-AAGVVGGARHTSNTKSEMVIVVTPRVIK 477


>gi|167575154|ref|ZP_02368028.1| putative bacteriophage-related lipoprotein [Burkholderia
           oklahomensis C6786]
          Length = 446

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/271 (16%), Positives = 91/271 (33%), Gaps = 22/271 (8%)

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI 209
               I  +  AV +            +   +  + +         +V ++  + EV    
Sbjct: 187 TASDIAAAPVAVGVQARGNELVIVGSHDEVAMLRKLVPELDTAPGEVVVRGWVYEVANT- 245

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
                       S+   +    +        +    +          +  + AL   +  
Sbjct: 246 --------GSANSAWSIAVRLLSGQLRLSSGDTASDTSAMRFTGPGVDAAISALNADSRF 297

Query: 270 RTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLS 324
           + ++ P +  +SG+      G Q   +       S+ T   S+T  D G++    PTV+ 
Sbjct: 298 KVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDAGLIFDVEPTVMR 357

Query: 325 PGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
              I L+++ E+S+ V         P+   R+  T   L  G  +VL GL++D     + 
Sbjct: 358 D-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLGGLIQDRDATARS 416

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           G   L   P   + F     +++ TE+ +  
Sbjct: 417 GYSWL---P---SFFDGRSSSKQRTEVLLVL 441


>gi|254244616|ref|ZP_04937938.1| PilN [Pseudomonas aeruginosa 2192]
 gi|126197994|gb|EAZ62057.1| PilN [Pseudomonas aeruginosa 2192]
          Length = 569

 Score = 96.0 bits (237), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|126441103|ref|YP_001059995.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220596|gb|ABN84102.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 394

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 51/226 (22%), Positives = 81/226 (35%), Gaps = 20/226 (8%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
           QV ++  + EV +       FQ ++         S  +   G   +          L   
Sbjct: 178 QVAVRAWVYEVSKQEDNNSAFQLALRLLGGRVGASIGSGTIGDDSNA-------IRLRAG 230

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTT 309
            FE  + AL   +  R +  P L   SGQ A    G             +S     SV  
Sbjct: 231 GFEAAIAALNSDSRFRVVTSPNLRVRSGQLARLNVGQSVPVVGSVSYPSASGAPVQSVQY 290

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTI 368
            D GV+    PTV +   I L +  E+S+ V       + P+   RK +++  +  G  +
Sbjct: 291 QDAGVIFQVQPTVKAS-AIDLNVIEEISDFVRTTTGVNNSPTKNTRKLESSFSVEDGDAV 349

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           ++ GL +D    L  G+  L   P   +  R    N   TEI +  
Sbjct: 350 LIGGLTQDKESHLDSGLSFL---P---SWMRGRASNSSRTEILLLL 389


>gi|281356848|ref|ZP_06243338.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316406|gb|EFB00430.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 574

 Score = 95.6 bits (236), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 79/298 (26%), Gaps = 68/298 (22%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--------- 233
           K++   ++    QV L + + EV  +   ++G       ++ G                 
Sbjct: 256 KMLAQYDVPIP-QVRLNIKVYEVYSENNDKMGIDFQSWKNNEGADFFSVGGRYRNNWAAA 314

Query: 234 -FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ--------- 283
             GG   S G + +     +       L  L      + +    L   +           
Sbjct: 315 YSGGMARSFGSERTSFYNFNPKWNTRYLDFLASKGRAKVVHTGELCVRNNTSAQLSRTTQ 374

Query: 284 ---------------SASFTSGGQHLYKTV------------------------------ 298
                            +      + +                                 
Sbjct: 375 IFYIDTSKPVNNAIIPGTTLDPSGNPFPDTGVGPYELLSGLAGKLFDKSIDKPGKDSADL 434

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV-IGVNAGDMPSYRVRKAD 357
           S   G   +TT   G     T    S      R    ++    IG  +   P      A 
Sbjct: 435 SYGKGNQQITTAFTGFGFTMTVNNASVNLEETRFNVTLNNTSLIGFASNGTPRISKGNAV 494

Query: 358 TT-VELPSG-GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
           T  V LP G  + V+ GL K +  + + G+P L  IP LG LF     +    E+ + 
Sbjct: 495 TQDVSLPHGKDSFVIGGLRKQETVKSRTGVPWLMDIPYLGYLFSTESNSVRHAELIVV 552


>gi|224827067|ref|ZP_03700164.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
 gi|224600733|gb|EEG06919.1| type II and III secretion system protein [Lutiella nitroferrum
           2002]
          Length = 427

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/309 (18%), Positives = 99/309 (32%), Gaps = 32/309 (10%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            RD+A+L   LR    + +  V        +         +      +   + Q      
Sbjct: 133 YRDLAYLTELLRPLFKNGSFTV-----NRTVRAAPGNASSTPAPSGTAAALIDQKSDVMV 187

Query: 177 ANSSSKKVMNLLNI-----AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
              ++ ++  L  +         +V +K  + EV     +  GFQ ++         S  
Sbjct: 188 FQGTAAEIDMLKRVLPQVDTAMGEVLVKGVVYEVSTGQNEASGFQLAL---------SLL 238

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
               G  +           L   + +  + AL   +  + ++ P L   SG+SAS T G 
Sbjct: 239 GGKLGVTIGTPPKGDNAITLKTGAIDAAIGALAGDSRFKVVSTPYLRVKSGRSASLTVGQ 298

Query: 292 QHL-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA- 345
                          T   S+     GV+ +  P  +    I L +  +VS  V      
Sbjct: 299 DVPVLGSVSYPQGGGTPVRSIEYKSSGVIFNIAPQ-VRDRTIDLEVSQQVSNFVKTETGV 357

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
            D P+   R+  T V    G  IVL GL  +     + G+  L          R    + 
Sbjct: 358 DDSPTLIKRELRTHVSALDGELIVLGGLRDEKDNASRTGLSFLPD------FLRARSSSS 411

Query: 406 EETEIFIAA 414
            +TEI +  
Sbjct: 412 NQTEILLML 420


>gi|330882527|gb|EGH16676.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 635

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 68/214 (31%), Gaps = 15/214 (7%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G  +++  S R      +               +  +  L+     QV ++  I EV   
Sbjct: 417 GNSKSLDASTRITAQKSSNQLLVRTRPAQWKEIESAIKRLDNP-PLQVQIETRILEVSLT 475

Query: 209 ILKQIGFQH--------SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
               +G Q         S T  +   +       G    +     +        + +  L
Sbjct: 476 GELDMGVQWYLGRLAGNSGTTGNVTNTAGSQGAIGTGGAALASTDAFFYSFVSNNLQVAL 535

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT------VSSSTGATSVTTHDYGV 314
            ALE     + L+ P+L  ++ Q A    G              S++T  +SV     GV
Sbjct: 536 RALETNGRTQVLSAPSLVVMNNQQAQIQVGDNIPISQTSINTNTSTNTTLSSVEYVQTGV 595

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM 348
           +L   P +   G + + IQ +VS      N  D 
Sbjct: 596 ILDVVPRINPGGLVYMDIQQQVSSADTNSNTSDA 629


>gi|91210748|ref|YP_540734.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|149365806|ref|ZP_01887841.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165927175|ref|ZP_02223007.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938242|ref|ZP_02226801.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165938650|ref|ZP_02227206.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|167422164|ref|ZP_02313917.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167466986|ref|ZP_02331690.1| putative phage-related secreted protein [Yersinia pestis FV-1]
 gi|191174647|ref|ZP_03036128.1| type II/III secretion system protein [Escherichia coli F11]
 gi|218929372|ref|YP_002347247.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|229837795|ref|ZP_04457954.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229898356|ref|ZP_04513503.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|91072322|gb|ABE07203.1| putative phage-related secreted protein [Escherichia coli UTI89]
 gi|115347983|emb|CAL20908.1| putative phage-related secreted protein [Yersinia pestis CO92]
 gi|149292219|gb|EDM42293.1| putative phage-related secreted protein [Yersinia pestis CA88-4125]
 gi|165913524|gb|EDR32145.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165913903|gb|EDR32521.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920843|gb|EDR38091.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|166958976|gb|EDR55997.1| putative phage-related secreted protein [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|190905074|gb|EDV64732.1| type II/III secretion system protein [Escherichia coli F11]
 gi|229688646|gb|EEO80715.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694161|gb|EEO84208.1| General secretion pathway protein D [Yersinia pestis biovar
           Orientalis str. PEXU2]
          Length = 414

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%)

Query: 95  GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G  N+ +    G          + +  R         R     S+I    VS +    G 
Sbjct: 77  GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
           V +    + +   S           Y  +     +    +       D+V +   + EV+
Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                  G   +    S   + S  A     F++          +   S + + + L+  
Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +    ++ P L   +  SASF+ G         TV+++T   SV     GV+ + TP+ +
Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305

Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               + L+IQ ++S  V       + P+   R   T V L  G  I+L GL +    +  
Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G           + F +      +T+I +      V 
Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393


>gi|149190975|ref|ZP_01869237.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
 gi|148835218|gb|EDL52193.1| hypothetical protein VSAK1_26575 [Vibrio shilonii AK1]
          Length = 479

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 91/311 (29%), Gaps = 26/311 (8%)

Query: 125 MTLRRFIADSNIRVEMVSD-TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
             L     D +I  E+ +D   VL G              S         +     + + 
Sbjct: 180 QFLNIGYQDVDIISEIANDVRNVLGG---DEAAKNAVTASSNMSAITVTTSPDKMQTVEH 236

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEG 242
           ++         QV L V I E   D+  + G   + +  S  G  K F           G
Sbjct: 237 LIEHYQKELSKQVLLDVRIVEFFSDVGTERGVNWNLVYDSGEGIVKFFVPGTNTLSKQAG 296

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST 302
              + +G       E ++  LE+  ++ +    T    + Q A  T      Y    SS 
Sbjct: 297 YGMAFEGTGKWSGSEALIKVLEQQGSVSSETPVTYMVSNNQPARITQQRDVPYLYEVSSN 356

Query: 303 GATSVTTHDY-------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN------AGDMP 349
              +  +          GV    T  V S   + LR+  ++ +                 
Sbjct: 357 SNENTVSTGVTRKTEVEGVDFMVTANVQSD-YVSLRMSGQLQKITKEETKKVENIDLGFL 415

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           + +  +     +L  G T V+A + +      +              LF  +    E  E
Sbjct: 416 TTQKSEITFANKLRYGQTYVIASVKQQTKTAEETK-------NFFSTLFGGTGSKNETIE 468

Query: 410 IFIAATPFLVK 420
             +  TP  V+
Sbjct: 469 TLVLLTPRKVQ 479


>gi|306813501|ref|ZP_07447691.1| putative phage-related secreted protein [Escherichia coli NC101]
 gi|305853246|gb|EFM53686.1| putative phage-related secreted protein [Escherichia coli NC101]
          Length = 414

 Score = 95.6 bits (236), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 111/338 (32%), Gaps = 33/338 (9%)

Query: 95  GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G  N+ +    G          + +  R         R     S+I    VS +    G 
Sbjct: 77  GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 136

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
           V +    + +   S           Y  +     +    +       D+V +   + EV+
Sbjct: 137 VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 196

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                  G   +    S   + S  A     F++          +   S + + + L+  
Sbjct: 197 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 246

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +    ++ P L   +  SASF+ G         TV+++T   SV     GV+ + TP+ +
Sbjct: 247 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 305

Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               + L+IQ ++S  V       + P+   R   T V L  G  I+L GL +    +  
Sbjct: 306 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 365

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G           + F +      +T+I +      V 
Sbjct: 366 SGW----------SFFGSRTSESNKTDIMVMLQVRKVD 393


>gi|327412691|emb|CAX67687.1| putative Type IV pilus lipoprotein (PilN) [Yersinia enterocolitica]
          Length = 562

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
            QV L V +  V +   +Q G    +   S     +            +  G  S+    
Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376

Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
              + +      ++ AL +   +  + E     I+     F    Q  Y   SS      
Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
             +T +        G+ +   P +   G + L+    +S+           G    D P+
Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSHDGNTRTDTPA 496

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407
           +++R    TV + +G T+VL G  + D    K+G   P          LF      +   
Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549

Query: 408 TEIFIAATPFLVK 420
           T + I  TP L++
Sbjct: 550 TTLVILITPVLLR 562


>gi|218691155|ref|YP_002399367.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
 gi|218428719|emb|CAR09511.1| putative type IV pilus outer membrane secretin lipoprotein
           [Escherichia coli ED1a]
          Length = 533

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 77/265 (29%), Gaps = 22/265 (8%)

Query: 173 RNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                      V N +         QV L + I  +++   +Q G   +   S       
Sbjct: 273 TVTDTPQVLDTVKNFMEERNREMRRQVVLNIEILSIKKTSKEQAGIDWNAVFSDGHLGID 332

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
             + F                      +  L AL     +  + + +    +        
Sbjct: 333 LTSAFTNAADEVVTSGVSIIDGKLTGSKAFLKALSSQGKVSVVTQNSAVTKNLTPVPMQV 392

Query: 290 GGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQT 334
             Q  Y    ++    +V         T   G  +   P +            + L  + 
Sbjct: 393 ASQQGYIESVTTDTTANVGSSTSLNAATITTGFNMTLLPFIQPGSHRLQLLFSMSLSDKP 452

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                  G +    PS  ++  + T++L S  T++L+G  +   + L++G+      P  
Sbjct: 453 VFEVFESGGSRAQTPSVELKTINQTIDLKSDQTVILSGFQQFSRKSLRQGV----GTPSF 508

Query: 395 GALFRNSRFNREETEIFIAATPFLV 419
             L        ++T + +  TP ++
Sbjct: 509 FGLGGGVDSADDDTILVVLITPHVI 533


>gi|37955689|gb|AAP22528.1| PilN [Pseudomonas aeruginosa]
          Length = 569

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|152986390|ref|YP_001349821.1| type IVB pilus formation outer membrane protein [Pseudomonas
           aeruginosa PA7]
 gi|150961548|gb|ABR83573.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pseudomonas aeruginosa PA7]
          Length = 569

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|126668015|ref|ZP_01738979.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
 gi|126627525|gb|EAZ98158.1| hypothetical protein MELB17_09748 [Marinobacter sp. ELB17]
          Length = 498

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/239 (17%), Positives = 76/239 (31%), Gaps = 18/239 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L++  A V  +         +   ++                +      +  +   
Sbjct: 259 RQVHLQIRTASVTVENANDFNLTWNNILNTVNNGDFDVGLNSAAVSTAANPNILNVIRTS 318

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----------G 303
                 L  L + T    + E ++T +S Q AS     +  Y +  S             
Sbjct: 319 TGASLALEMLAQETESTEINEQSVTTLSNQPASLKVLSETGYISGISQQETSGDLNNVIS 378

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361
              VTT   G      P V+S   + L++  E+S  +  +N    +     R  +T V+ 
Sbjct: 379 DVEVTTITTGFDATLVPRVVSDSVLQLQVALELSNNLQLINFDSTIVQTPTRNRNTVVQR 438

Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             L +G T +LA    +       G    +    LG     +  +  +  + I  TP +
Sbjct: 439 AWLRNGETWILAAFNSEKTTNKISGT-GSAGFWGLG---GGTSKSNNQQVLLIMITPHI 493


>gi|148807357|gb|ABR13431.1| putative PilN [Pseudomonas aeruginosa]
          Length = 569

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|315499170|ref|YP_004087974.1| type II and iii secretion system protein [Asticcacaulis excentricus
           CB 48]
 gi|315417182|gb|ADU13823.1| type II and III secretion system protein [Asticcacaulis excentricus
           CB 48]
          Length = 543

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/278 (18%), Positives = 92/278 (33%), Gaps = 8/278 (2%)

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
              + L+     +    Q    +       L     DQV++ V I   +      +G   
Sbjct: 211 DAKLVLTRMSELERTGLQDIPQAGGGETPTLPPETPDQVSVDVAIILSQNAQRDSVGVNL 270

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI-RTLAEPT 276
                     +      GG     G   ++   +        L+   R     + +A P 
Sbjct: 271 LDGLQLQYGRQDQQNHSGGDT---GVTRTITDTITLPQLTYNLNLFNRFGQYYQVVARPM 327

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           LTA  G+ + F  G     K        + +   D G  +  TP  ++  R  LRI+   
Sbjct: 328 LTAYRGEPSDFFVGRS--TKVAVKGVNFSQLENIDIGTQVKVTPVEITSDRTRLRIEVTR 385

Query: 337 SEPVIGVNAGDMPSYRV--RKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
           S            +     +   TTVE+  G T++L+GL +          PL+   P++
Sbjct: 386 SFLSGEPAGNFNEALNTWRQTVSTTVEVRFGTTLILSGLSESVRDSSVTKTPLIGDAPLI 445

Query: 395 GALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDD 432
           G+ F     N+    + +  TP   + +  +  SR  D
Sbjct: 446 GSGFNRRVTNQRRDAVLVLVTPSPARVMESQGWSRQAD 483


>gi|67639316|ref|ZP_00438187.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei GB8 horse 4]
 gi|238519853|gb|EEP83319.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia mallei GB8 horse 4]
          Length = 441

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 161 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 220

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 221 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 280

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 281 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 340

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 341 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 400

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 401 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 434


>gi|167743301|ref|ZP_02416075.1| hypothetical protein Bpse14_34822 [Burkholderia pseudomallei 14]
          Length = 403

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 49/278 (17%), Positives = 86/278 (30%), Gaps = 29/278 (10%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSIT 220
             +  + S          ++V   +         QV L VT+  V        G   ++ 
Sbjct: 123 VASPATGSISVTDTPDVLERVAAFMAQQNRSLSRQVLLNVTVLSVSLQAGDAYGIDWNLV 182

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTLAEPTL 277
             +          F    ++   D S   +     F     ++ AL +   +R     ++
Sbjct: 183 YKTMSAGFGITNPFHPTALTAPADMSAAVLSPTSRFNGTKLLIRALSQQGTVRRKTSASV 242

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIG 329
           T ++ Q        Q  Y    S+T   +V +           G  +   P VL  G + 
Sbjct: 243 TTLNNQPVPVQVATQTGYLASVSTTNTANVGSSTALTPGVVTTGFNMTLLPHVLDDGTVM 302

Query: 330 LRIQTEVS------EPVIGVNAGDM-----PSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
           L+  T +S      E         +     P   +R     V + SG T+V++G    + 
Sbjct: 303 LQFSTNISSLLELKEVTSSTGGSGLARIQTPDVDMRNFLQRVAMKSGETLVISGYEGAND 362

Query: 379 QQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              + G+      P + AL       R    I I  TP
Sbjct: 363 SLDERGV----GTPKMIALGGGYEAQRAREVIVILITP 396


>gi|300310142|ref|YP_003774234.1| type IVB pilus formation outer membrane protein [Herbaspirillum
           seropedicae SmR1]
 gi|300072927|gb|ADJ62326.1| type IVB pilus formation outer membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 602

 Score = 95.2 bits (235), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 42/252 (16%), Positives = 75/252 (29%), Gaps = 35/252 (13%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA----ADFGGKFVSEGGDFSVK 248
             Q+ + VT+  V      Q G   +    S   +   A           VS        
Sbjct: 351 SRQIAINVTVLSVTLSDDDQYGINWNAVYRSLNSTFGIANAYEGALSTGLVSFTAGIPSS 410

Query: 249 GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT 308
           G       + V+ AL +   +R     ++  ++ Q        Q  Y     S+    V 
Sbjct: 411 GTSGFSGSQAVIQALSQQGKVRRQTTASVVTLNNQPVPVQVARQTTYLQSLQSSLVAQVG 470

Query: 309 T--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS-------------EPVIGVNAGD 347
           T           G  +   P +L+ G + L+  T++S                      +
Sbjct: 471 TTTSLTPGVVTAGFNMSILPHMLTNGTVMLQFSTDISTLRRIRQITASTDSSGRATALIE 530

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSRFN 404
            P    R     V + S  T++++G  + D    + G+      P   +LG         
Sbjct: 531 SPELDTRNFLQRVAMKSNETLIISGFEQTDENLGRSGV---GD-PKNLLLG---GGVSAA 583

Query: 405 REETEIFIAATP 416
             +  I +  TP
Sbjct: 584 TNKEVIVVLITP 595


>gi|87306498|ref|ZP_01088645.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
 gi|87290677|gb|EAQ82564.1| general secretory pathway protein D-like [Blastopirellula marina DSM
            3645]
          Length = 1313

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 89/308 (28%), Gaps = 83/308 (26%)

Query: 195  QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            QVT++V    +  +  ++IG    +    +           G      G           
Sbjct: 990  QVTIEVRFITLNDNFFERIGIDFDLDIKDNTSGIGTNRGSDGSPSITIGLDQTGNPTSDL 1049

Query: 255  SFET--------------------------------------VLHALERATAIRTLAEPT 276
                                                      V+ A +       +  P 
Sbjct: 1050 DLSFAQNSFGNTVPAIGGLGAAAGSIGGSFGFAMLSDIEAFFVMQAAQSDLRSNVMQAPK 1109

Query: 277  LTAISGQSASFTSGGQHLYKTV-------SSSTGATSVTTHDYGVVLHFTPTVLSPGR-I 328
            +T  +GQ+A  T   Q  + T         ++     +   + G  L     V +  R +
Sbjct: 1110 VTLFNGQTAFVTDSTQRPFVTSVTPVVGDFAAAQQPVIVVLNEGTSLTVQAVVSADRRFV 1169

Query: 329  GLRIQTEVSEP-------------------------------------VIGVNAGDMPSY 351
             L +    S+                                       +       P +
Sbjct: 1170 RLTLVPMFSQIGEVDTFTFEGTSSSRADSTVEDPDAADGGTTTDNEEEQMTGTTVQQPEF 1229

Query: 352  RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             +    TTV +P GGT++L G+ +   ++ + G+P++SK+P +  LFRN    R    + 
Sbjct: 1230 SIITVTTTVSVPDGGTVLLGGIKRLSEERREAGVPIVSKLPYINRLFRNVGIGRSTQSLM 1289

Query: 412  IAATPFLV 419
            +  TP ++
Sbjct: 1290 MMVTPRII 1297


>gi|107099850|ref|ZP_01363768.1| hypothetical protein PaerPA_01000870 [Pseudomonas aeruginosa PACS2]
          Length = 524

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 271 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 330

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 331 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 390

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 391 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 450

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 451 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 505

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 506 TRNTKREVIVVLITPVVL 523


>gi|123443695|ref|YP_001007666.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122090656|emb|CAL13527.1| putative type IV pilus operon lipoprotein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 562

 Score = 94.8 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 84/253 (33%), Gaps = 33/253 (13%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
            QV L V +  V +   +Q G    +   S     +            +  G  S+    
Sbjct: 317 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAADNAFSGGLSILDTA 376

Query: 252 DRFSFE-----TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
              + +      ++ AL +   +  + E     I+     F    Q  Y   SS      
Sbjct: 377 TGPAAKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTATAN 436

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
             +T +        G+ +   P +   G + L+    +S+           G    D P+
Sbjct: 437 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPTIQPFFSRDGNTRTDTPA 496

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALF-RNSRFNREE 407
           +++R    TV + +G T+VL G  + D    K+G   P          LF      +   
Sbjct: 497 FKLRSLTQTVNMRAGQTLVLTGADQLDSVANKQGAFTPG-------NFLFGGGHVGSDTR 549

Query: 408 TEIFIAATPFLVK 420
           T + I  TP L++
Sbjct: 550 TTLVILITPVLLR 562


>gi|254238773|ref|ZP_04932096.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
 gi|126170704|gb|EAZ56215.1| type IV pilus protein PilN [Pseudomonas aeruginosa C3719]
          Length = 569

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/258 (17%), Positives = 81/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 316 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 375

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 376 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 435

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 436 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 495

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +                 
Sbjct: 496 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGD--AGFFGLGGGL 550

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 551 TRNTKREVIVVLITPVVL 568


>gi|167820480|ref|ZP_02452160.1| hypothetical protein Bpse9_35477 [Burkholderia pseudomallei 91]
          Length = 411

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 163 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 222

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 223 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 282

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 283 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 342

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 343 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 398

Query: 411 FIAATP 416
            I  TP
Sbjct: 399 VILITP 404


>gi|87300799|ref|ZP_01083641.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
 gi|87284670|gb|EAQ76622.1| possible general (type II) secretion pathway protein D precursor
           [Synechococcus sp. WH 5701]
          Length = 911

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 36/163 (22%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHF-TPT 321
           L  AT  RT A  +   +  Q         +   T ++   +   T    G+        
Sbjct: 729 LSPATIGRTRANESFVTVGRQ-----VVSAYDVTTTANVGVSCEPTFSTAGLTFGARVSK 783

Query: 322 VLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV---RKADT-TVELPSGGTIVLAGLLKDD 377
           +   G +   +   +S  V            +   R+ DT +V +  G T++L G++ DD
Sbjct: 784 IDDNGFVTFTLSPAISGVVDRQPVPGCGFIDILRLRRLDTGSVRVRDGQTLILTGVISDD 843

Query: 378 IQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             Q+    P+L  +P+LG  FR +  +R + E+ I  TP ++ 
Sbjct: 844 DFQVVSKWPILGDLPLLGQFFRKTSGSRNKNELVILVTPRIID 886


>gi|167898912|ref|ZP_02486313.1| hypothetical protein Bpse7_34586 [Burkholderia pseudomallei 7894]
          Length = 417

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 169 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 228

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 348

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404

Query: 411 FIAATP 416
            I  TP
Sbjct: 405 VILITP 410


>gi|49658861|emb|CAF28487.1| putative lipoprotein [Yersinia pseudotuberculosis]
          Length = 530

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 50/252 (19%), Positives = 83/252 (32%), Gaps = 31/252 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD--FGGKFVSEGGDFSVKGVL 251
            QV L V +  V +   +Q G    +   S     +            +  G  S+    
Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINAANNTLSGGLSILDTA 344

Query: 252 DR-----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
                     E ++ AL +   +  + E     I+     F    Q  Y   SS      
Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
             +T +        G+ +   P +   G + L+    +S+  I        G    D P+
Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408
           +++R    TV L +G T+VL G  + D    K+G   P  S     G            T
Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518

Query: 409 EIFIAATPFLVK 420
            + I  TP L++
Sbjct: 519 TLVILITPVLLR 530


>gi|167907237|ref|ZP_02494442.1| hypothetical protein BpseN_33715 [Burkholderia pseudomallei NCTC
           13177]
          Length = 419

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 171 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 230

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 231 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 290

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 291 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 350

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 351 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 406

Query: 411 FIAATP 416
            I  TP
Sbjct: 407 VILITP 412


>gi|32481696|gb|AAP84210.1| PilN2 [Pseudomonas aeruginosa PA14]
          Length = 540

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 287 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 346

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 347 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 406

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 407 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 466

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 467 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 521

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 522 TRNTKREVIVVLITPVVL 539


>gi|167923443|ref|ZP_02510534.1| hypothetical protein BpseBC_33112 [Burkholderia pseudomallei
           BCC215]
          Length = 413

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 165 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 224

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 225 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 284

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 285 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 344

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 345 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 400

Query: 411 FIAATP 416
            I  TP
Sbjct: 401 VILITP 406


>gi|167724338|ref|ZP_02407574.1| hypothetical protein BpseD_35290 [Burkholderia pseudomallei DM98]
 gi|167850311|ref|ZP_02475819.1| hypothetical protein BpseB_34040 [Burkholderia pseudomallei B7210]
          Length = 414

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 166 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 225

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 226 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 285

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 286 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 345

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 346 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 401

Query: 411 FIAATP 416
            I  TP
Sbjct: 402 VILITP 407


>gi|167915601|ref|ZP_02502692.1| hypothetical protein Bpse112_34291 [Burkholderia pseudomallei 112]
          Length = 433

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 185 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 244

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 245 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 304

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 305 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 364

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 365 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 420

Query: 411 FIAATP 416
            I  TP
Sbjct: 421 VILITP 426


>gi|167828852|ref|ZP_02460323.1| hypothetical protein Bpseu9_34514 [Burkholderia pseudomallei 9]
          Length = 415

 Score = 94.8 bits (234), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 167 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 226

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 227 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 286

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 287 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 346

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 347 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 402

Query: 411 FIAATP 416
            I  TP
Sbjct: 403 VILITP 408


>gi|296391291|ref|ZP_06880766.1| Type IV B pilus protein [Pseudomonas aeruginosa PAb1]
          Length = 528

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 275 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 334

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 335 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 394

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 395 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 454

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 455 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 509

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 510 TRNTKREVIVVLITPVVL 527


>gi|213019427|ref|ZP_03335233.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|212994849|gb|EEB55491.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 448

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 85/266 (31%), Gaps = 52/266 (19%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +   + +    +  +      
Sbjct: 194 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGINLNDLHNETKSITNQDS------ 247

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                  S+  ++     E ++  L++      ++ P + AI+ Q A  +    H+Y T 
Sbjct: 248 -------SITSLVMNSDLENLVKTLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 300

Query: 299 SSSTGA--------TSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
                         T + +   GVVL   P++      I + I   +S            
Sbjct: 301 DIQKDTGNSNHALITKMNSTPIGVVLIIHPSINIDTNEIFMDIHPTLSRINNYTKDPNIE 360

Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                       D+P    R+  +T+++ SG  +V+ GL++                   
Sbjct: 361 YVAQQNKMKLNSDIPIIETREMHSTLKIKSGEVMVIGGLIEHRKDNQ------------- 407

Query: 395 GALFRNSRFNREET-EIFIAATPFLV 419
             L         +T E  I     +V
Sbjct: 408 -NLLHQKSKKLAKTVETVIFLKATIV 432


>gi|167615506|ref|ZP_02384141.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis Bt4]
          Length = 417

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    +++  D S   +  
Sbjct: 169 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 228

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 229 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 288

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
                      G  +   P VL  G + L+  T +S  +                   P 
Sbjct: 289 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 348

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 349 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 404

Query: 411 FIAATP 416
            I  TP
Sbjct: 405 VILITP 410


>gi|213419653|ref|ZP_03352719.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 173

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 51/132 (38%), Gaps = 6/132 (4%)

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP-----VIGVNAGDMPSYRVRK 355
                ++    YG ++   P   + G+I + +  E             +   +P      
Sbjct: 6   GERNVALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEVGRTL 65

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+          
Sbjct: 66  ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 125

Query: 416 PF-LVKPVAMRD 426
           P  +V P+    
Sbjct: 126 PKEIVDPLTPDA 137


>gi|167577356|ref|ZP_02370230.1| type IV pilus biogenesis protein PilN, putative [Burkholderia
           thailandensis TXDOH]
          Length = 425

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 80/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   S+   +     +    F    +++  D S   +  
Sbjct: 177 SRQVLLNVTVLSVSLKAGDAYGIDWSLVYKTMSAGFNITNPFNPVSLTKPADLSATVLSP 236

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 237 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 296

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-----------GVNAGDMPS 350
                      G  +   P VL  G + L+  T +S  +                   P 
Sbjct: 297 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKEVSSSTGGRSAARIQTPD 356

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 357 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 412

Query: 411 FIAATP 416
            I  TP
Sbjct: 413 VILITP 418


>gi|153947286|ref|YP_001402688.1| type IVB pilus formation outer membrane protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958781|gb|ABS46242.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Yersinia pseudotuberculosis IP 31758]
          Length = 530

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 82/252 (32%), Gaps = 31/252 (12%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L V +  V +   +Q G    +   S     +          +      +  +   
Sbjct: 285 RQVQLNVQVLSVTQSRKEQFGLDWKLVYQSLNNIGASVTGNLINVANNTLSGGLSILDTA 344

Query: 254 F-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------ 300
                     E ++ AL +   +  + E     I+     F    Q  Y   SS      
Sbjct: 345 TGPAEKFSGSELLIKALSQQGNVSLVTELNRATINLTPVPFQISDQTGYIQSSSTTVTAN 404

Query: 301 --STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
             +T +        G+ +   P +   G + L+    +S+  I        G    D P+
Sbjct: 405 AGTTSSMQTGIITTGLFMSMLPYIQENGDVQLQFAFTLSDKPIIQPFFSRDGNTRNDTPA 464

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG--IPLLSKIPILGALFRNSRFNREET 408
           +++R    TV L +G T+VL G  + D    K+G   P  S     G            T
Sbjct: 465 FKLRSLTQTVNLRAGQTLVLTGADQLDTVANKQGAFTP--SNFWWGG----GHNGLETRT 518

Query: 409 EIFIAATPFLVK 420
            + I  TP L++
Sbjct: 519 TLVILITPVLLR 530


>gi|37525036|ref|NP_928380.1| hypothetical protein plu1051 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36784462|emb|CAE13346.1| pilN [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 567

 Score = 94.4 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 27/250 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L V +  V     +Q+G    +  +   + G + S +    G   +  G   ++  
Sbjct: 322 RQVLLNVQVLSVSTSRKEQMGLDWGLVYNSLHNLGATLSGSFSGMGSGTTSAGVSILESA 381

Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
             +         ++ AL     +  +        +          Q +Y   SS+T AT 
Sbjct: 382 TGKAAKLSGSSLLIKALSEQGNVSVVTSQGSATTNLTPIPIQMADQTVYVAQSSTTTATD 441

Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPS 350
           V             G  +   P +   G + L++   +S+P          G +  +MP 
Sbjct: 442 VGATTALTPGMITTGFNMTLLPLIQRNGDVQLQVAFNLSDPPTIRSFTSKEGNSYIEMPY 501

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
            R+R     V L +G  +VL G  + D +  K G        +LG          + + +
Sbjct: 502 TRLRSLSQKVNLRAGQALVLTGFEQADTRVTKTGTFTPGNF-LLG---GGQSGENQRSTL 557

Query: 411 FIAATPFLVK 420
            I  TP L+ 
Sbjct: 558 VILITPVLLD 567


>gi|116052606|ref|YP_792921.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587827|gb|ABJ13842.1| Type IV B pilus protein [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 545

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 25/258 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-----ADFGG 236
           ++++N  N +   QV L V +  V      Q+G   ++   S                  
Sbjct: 292 QQLVNRENESITKQVLLNVNVLSVALTDKDQLGIDWNLVYKSLNNKWGIGLKNTMPGIDQ 351

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS------- 289
             +S                + ++ AL +   + T+  P++T ++ QSA           
Sbjct: 352 SAISGSVSILDTANSAWAGSKAMVQALAQQGRVSTVRSPSVTTLNLQSAPIQIGRYDSYL 411

Query: 290 -GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR------IGLRIQTEVSEPVIG 342
              Q        ST +        G  +   P V+  G       I +  +        G
Sbjct: 412 ASSQISNVAQVGSTTSLIPGAVTSGYNMSLLPFVMESGEMLLKININMTSRPTFEMQTSG 471

Query: 343 VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402
            +    PSY ++  D  V L SG T+VL+G   D   +    +         G       
Sbjct: 472 DSKAQFPSYDIQLFDQKVRLRSGETLVLSGF--DQTTEDTNKV-GTGDAGFFGL--GGGL 526

Query: 403 FNREETE-IFIAATPFLV 419
               + E I +  TP ++
Sbjct: 527 TRNTKREVIVVLITPVVL 544


>gi|171317904|ref|ZP_02907080.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
 gi|171096911|gb|EDT41783.1| type II and III secretion system protein [Burkholderia ambifaria
           MEX-5]
          Length = 460

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 59/371 (15%), Positives = 113/371 (30%), Gaps = 40/371 (10%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             DV+DV+V         V +   +    K  G     ++    + +        R  + 
Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMKKPGA----VLAKADRDVYVYKPR-YRKASE 160

Query: 123 LEMTLRRFIAD----SNIRVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGR 173
           L   +   I        + V  V+   V    V     +          ++    ++   
Sbjct: 161 LRELVEPLIGARSMLPPVSVGPVAGDAVGAVQVPGAPAAMPNSGPFVQPVAGGVQARGSD 220

Query: 174 NQYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS 229
                S  +  +    +        +V ++    EV                S+   +  
Sbjct: 221 LVIVGSRDEVALLRKVVPELDTAPGEVVVRGWAYEVTNTDSAN---------SAWSIAAK 271

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                      +    S          +  + AL   +  + ++ P +   SG+      
Sbjct: 272 VLGGQLRISSGDTSSDSSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGEKVRLNV 331

Query: 290 GGQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-V 343
           G Q   +       SS T   S+T  D G++    PTV+    I LR+  E+S+ V    
Sbjct: 332 GQQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVATKT 390

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
                P+   R+  T   L  G  +VL GL++D     + G   L   P   +       
Sbjct: 391 GVDTSPTKNTRQLQTVTRLKDGEVVVLGGLIQDRNATARSGYAWL---P---SFLDGRSS 444

Query: 404 NREETEIFIAA 414
           +++ TE+ +  
Sbjct: 445 SKQRTEVLLVL 455


>gi|171322813|ref|ZP_02911537.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MEX-5]
 gi|171091832|gb|EDT37330.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia ambifaria MEX-5]
          Length = 346

 Score = 94.0 bits (232), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 24/244 (9%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG--GDFSVKGV 250
             QV L VT+  V        G   S+   +       +  F    ++ G      +   
Sbjct: 100 SRQVMLNVTVLSVSLKAGDAYGIDWSLVYKTVSAQFGISNPFTPAALTPGDLSATVLSPT 159

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-- 308
                 + ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V   
Sbjct: 160 SRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGSS 219

Query: 309 ------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYR 352
                 T   G  +   P VL  G + L+  T +S              G      P   
Sbjct: 220 TALTPGTVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLQLKDVSSSTGSGATRIQTPDVD 279

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +R     V + SG T+V++G    +    + GI      P + AL       R    I I
Sbjct: 280 MRNFLQRVAMKSGETLVISGYEGTNDSLDERGI----GTPKMIALGGGYEAQRSREVIVI 335

Query: 413 AATP 416
             TP
Sbjct: 336 LITP 339


>gi|311279575|ref|YP_003941806.1| type II and III secretion system protein [Enterobacter cloacae
           SCF1]
 gi|308748770|gb|ADO48522.1| type II and III secretion system protein [Enterobacter cloacae
           SCF1]
          Length = 406

 Score = 93.7 bits (231), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 43/225 (19%), Positives = 82/225 (36%), Gaps = 19/225 (8%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
           D+V +   + EV+       G   +                     +  G +     +  
Sbjct: 189 DEVFIAGYVFEVQTSERNGSGLALAAK--------LLGGKIEIGMGNMSGGYENFIRIGG 240

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV---SSSTGATSVTTH 310
            S + +       +    ++ P L   SG SA+F+ G +    +    + ++   SV   
Sbjct: 241 SSLDAMYELFRTDSRFNVVSSPRLRVKSGYSATFSVGQEVPVLSGIDRNQNSTYQSVDYR 300

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIV 369
             GV+L  TP+ +      L+I  ++S  +       + P+   R+  T V + SG  +V
Sbjct: 301 SAGVILDVTPS-VRNSVTDLKISQQLSNFIKTDTGVNNTPTLIKREVSTFVSVKSGDIVV 359

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           L GL +      + G   L K  +LG    +    + +T+I I  
Sbjct: 360 LGGLAETKDSDARTGFSFLPK--VLG----SRSDEKSKTDILIVL 398


>gi|83720458|ref|YP_443762.1| phage-related secreted protein [Burkholderia thailandensis E264]
 gi|83654283|gb|ABC38346.1| probable phage-related secreted protein YPO2280 [Burkholderia
           thailandensis E264]
          Length = 460

 Score = 93.7 bits (231), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 59/370 (15%), Positives = 116/370 (31%), Gaps = 38/370 (10%)

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNL--DILIERDI 120
             DV+DV+V         V +   +    +  G     ++    + +           D+
Sbjct: 106 SRDVRDVMVDFLDSLGFQVVTKNGVDYVMRKPGA----VLAKADRDVYVYKPRYRKASDL 161

Query: 121 AHLEMTL---RRFIADSNI--RVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRN 174
             L   L      +   ++       +  V + G       ++  A  ++    ++ G  
Sbjct: 162 RELVEPLIGSHSMLPPVSVGPVAGESAGAVQVPGAPAAVPTNAPVAQPVASGVQARGGEL 221

Query: 175 QYANSSSKKVMNLLNIA----GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
               S  +  M    +        +V ++    EV              T S+   +   
Sbjct: 222 VIVGSRDEVAMLRKLVPELDTAPGEVVVRGWAYEVTNTDS---------TNSAWSIAAKV 272

Query: 231 AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG 290
                     +               +  + AL   +  + ++ P +   SG+      G
Sbjct: 273 LGGQLRISSGDTSSDKSAVRFTGPGIDAAISALNADSRFKVISSPHVRIASGERVRLNVG 332

Query: 291 GQHLYK-----TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VN 344
            Q   +       SS T   S+T  D G++    PTV+    I LR+  E+S+ V     
Sbjct: 333 QQVPTQSSVSYQGSSGTPVQSITYQDAGLIFDVEPTVMRD-AIELRVHEEISDFVPTKTG 391

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
               P+   R+  T   L  G  +VL GL++D     + G   L   P   +       +
Sbjct: 392 VDTSPTKNTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSS 445

Query: 405 REETEIFIAA 414
           ++ TE+ +  
Sbjct: 446 KQRTEVLLVL 455


>gi|257465733|ref|ZP_05630104.1| putative phage-related secreted protein [Actinobacillus minor 202]
 gi|257451393|gb|EEV25436.1| putative phage-related secreted protein [Actinobacillus minor 202]
          Length = 375

 Score = 93.3 bits (230), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 95/294 (32%), Gaps = 45/294 (15%)

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKV 184
             L  F+A     V    D +V +G    I   +  ++  +                   
Sbjct: 118 EYLAGFLAGEG-EVFANGDKLVYYGTSEDIARIKSVLKAVDM------------------ 158

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
                     +V +   + EV+ D+ K+        GS         +   G  +     
Sbjct: 159 -------KSREVIVTGYVFEVQ-DVEKE--------GSGINLLAKLLSGKLGISIGVKQS 202

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSS 301
           +     ++  + + +          + ++ P L   SG   +F+ G         T    
Sbjct: 203 YENFITVNAGNLDAIFELFRTDGRFQVVSSPILRVKSGSKGNFSVGSDVPILSNVTYQDG 262

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTV 360
               ++     GV+    PT +    I L+IQ ++S  V         P+   R   T V
Sbjct: 263 KPIQAIEYRSSGVIFDIQPT-IKNQSIDLKIQQQLSNFVKTDTGVNQSPTLIKRDLVTDV 321

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            + SG  IVL GL ++ + + + G   L K    G L      +  +T+I +  
Sbjct: 322 SVKSGDVIVLGGLAENKLTEGETGFSFLPK----GWL-TGKSKSSTKTDIIVLL 370


>gi|225874164|ref|YP_002755623.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
           51196]
 gi|225791968|gb|ACO32058.1| hypothetical protein ACP_2600 [Acidobacterium capsulatum ATCC
           51196]
          Length = 612

 Score = 93.3 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 44/228 (19%), Positives = 90/228 (39%), Gaps = 14/228 (6%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + E+    L + G   +I G           DF   FV  GG  +  G     +     +
Sbjct: 376 VQEIISSGLAKAGDWETIIGILLAAGDISGTDFNNPFVIFGGGITETGAEWNTT---AAN 432

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS---------SSTGATSVTTHDY 312
            L  ++ + +L +  L+    + A+F  G ++   T           S+  +      + 
Sbjct: 433 MLLTSSNVISLDQVQLSVRDQKEATFLDGERYPIMTGKLSNLGNLGESTGTSPQFQYVNL 492

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G+ L  TP++ +   + L ++ ++S    G    D+P    R+    V + +G + ++  
Sbjct: 493 GLTLKVTPSIQANKNVTLHMKLQLSGLA-GTTLDDIPVLTNRQYSGEVSIHAGYSALIVS 551

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            +         G+P LS+IP L  +  N   +  + E+ I  TP +++
Sbjct: 552 SMSKQNNLDLTGMPGLSEIPDLHDM-TNRDTSSSDQELVILVTPHIIR 598


>gi|161617498|ref|YP_001591463.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161366862|gb|ABX70630.1| hypothetical protein SPAB_05357 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 557

 Score = 93.3 bits (230), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 82/251 (32%), Gaps = 27/251 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I  V +   +Q+G    +   S     +          +  G   +  +  
Sbjct: 311 SRQVQLNIQIVSVNQTRNEQLGLDWGLVYKSLHNFGATLTGSMANASTSAGSAGISILDT 370

Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQS-ASFTSGGQHLYKTVSSS--- 301
                        ++ AL     +      T    +    A   S  Q +  + SS+   
Sbjct: 371 ATGNAAKFSGSSLLIKALSEQGNVSMALNQTDPTANLTPVAYQLSNQQGVLTSSSSTATA 430

Query: 302 ----TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMP 349
               T + +VTT   G+ +   P +   G + L+     + P          G    D+P
Sbjct: 431 NVGVTSSQTVTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISRDGNTRNDIP 490

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   +     V L SG T+VL G  + ++   K+G        ILG         R    
Sbjct: 491 NTSTQGLARKVNLRSGQTLVLTGSEQQNLSANKQGT-FTPDNFILG---GGQNGTRGRNT 546

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 547 LVIMITPVLLR 557


>gi|327538217|gb|EGF24896.1| protein containing Type II and III secretion system domain
           [Rhodopirellula baltica WH47]
          Length = 109

 Score = 92.9 bits (229), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 44/92 (47%)

Query: 331 RIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK 390
            +  +V      ++    P    R   TTV +  G TIV+ GL++ +       IP LS+
Sbjct: 9   EVSEDVRNATPALSINQYPIINRRSVSTTVSVKDGKTIVIGGLVQRETVDRVNRIPGLSR 68

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           +P +G LF+ ++    + E+ I  +P +V+  
Sbjct: 69  LPGVGYLFQTTQRQTRDAEVVIFISPRIVRST 100


>gi|222872747|gb|EEF09878.1| predicted protein [Populus trichocarpa]
          Length = 414

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 103/321 (32%), Gaps = 59/321 (18%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
           +  S+ + P   +   A I +    + +   +++  ++ +   +      + V++    D
Sbjct: 135 AAGSIMRTPVTLQFRDANIRMVFEALSRTSGLNVIFDRDVRADLK---TTIFVTNAAIED 191

Query: 79  VV------------VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
            V            V +  T++++     +          +  +    L   D   ++  
Sbjct: 192 AVDLILLQSQLDKKVLNANTLFIYPATPAK-----QQEYQELKVRTFQLSNVDSKQVQSL 246

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L+  +    + V+  ++TV + G   TI+ +++   ++   L +                
Sbjct: 247 LKSLLKIKEVVVDERANTVTIRGTPDTIRVAEQM--IAAQDLPEPE-------------- 290

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
                    V L+V + EV R+ L  +G     + + + P+ +          +   + S
Sbjct: 291 ---------VMLEVQVLEVSRERLTDLGIAWPNSFTMATPASATTWGVLHHLTANELEVS 341

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--- 303
                  F            T    LA P +   + + A    G +    + SS+     
Sbjct: 342 PLSATANFKL--------TDTDANLLASPRIRTRNKEKARILIGDKVPVISSSSTPSTSG 393

Query: 304 ---ATSVTTHDYGVVLHFTPT 321
                ++   D G+ L   P 
Sbjct: 394 PSFTQTIQYLDVGIKLEVEPQ 414


>gi|38201735|ref|NP_938102.1| PilN [Serratia entomophila]
 gi|38176558|gb|AAR13124.1| PilN [Serratia entomophila]
          Length = 544

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 74/241 (30%), Gaps = 19/241 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L V +  V +    Q G   +   +S     S    F G                 
Sbjct: 307 RQVVLNVQVYSVEKRTQDQYGIDWNAVFNSGSIGLSLTNAFSGAASDALNGGVSILDGKG 366

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV------ 307
              +  + AL     +  + E +    +  +       Q  Y +  ++    +V      
Sbjct: 367 AGTKAFIKALSEQANVSVMTEASSMTTNLSAVPIQVALQQDYASSVTTENTANVGSSSSI 426

Query: 308 --TTHDYGVVLHFTPTVLSPG-------RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
             +T   G  +   P ++           I +     +        + ++   R++    
Sbjct: 427 TKSTITTGFNMTVLPFLMPKSPKMQLQFAINMSDDPTMRTFTSEKTSVELMKTRLKTFTQ 486

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V + SG T+VL+G    +     +G+         G L   ++    +T + I  TP +
Sbjct: 487 RVIMQSGQTLVLSGYQSLNNTANHQGV---GSFRFFG-LGGGAKGENNKTMLVILITPVI 542

Query: 419 V 419
           +
Sbjct: 543 L 543


>gi|327412973|emb|CAX67991.1| PilN (lipoprotein) [Salmonella enterica subsp. VII]
          Length = 560

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 45/247 (18%), Positives = 80/247 (32%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG---SSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            QV L V +  V     +Q+G   +I      S+G S +  +       S          
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDIANATSASVSILDTAT 372

Query: 251 LDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            +   F     ++ AL     +  +        +          Q +Y   SS+T  T V
Sbjct: 373 GNAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432

Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
                        G  +   P +   G + L++   +S+P          G +  +MP  
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDDGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           ++R       L +G  +VL G  + + +  K G        +LG        +   + + 
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548

Query: 412 IAATPFL 418
           I  TP L
Sbjct: 549 IIITPEL 555


>gi|330862295|emb|CBX72456.1| hypothetical protein YEW_HH31880 [Yersinia enterocolitica W22703]
          Length = 158

 Score = 92.9 bits (229), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 59/159 (37%), Gaps = 15/159 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  +  +   + +FL     +                   V     + + +   +  ++
Sbjct: 1   MKVARTRYLNQIVLFLVCMIIACF---------------IAVNRANAEPVYLSTGQSYMI 45

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +   ++  V VS    AD  +    ++ ++ K  G A  IL   +   +    IL++  I
Sbjct: 46  KTQEEIDTVFVSAAAIADYELVGKNSIIVYAKQEGTAEFILFNQNHHPIKKSAILVDNTI 105

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQR 159
                 +R    +S+I +  + D+ +L G V T +  ++
Sbjct: 106 TAAHKRIRLEYPESDIEINKIGDSYILTGTVETEEAKKQ 144


>gi|238026031|ref|YP_002910262.1| type II secretory pathway, component PulD [Burkholderia glumae
           BGR1]
 gi|237875225|gb|ACR27558.1| Type II secretory pathway, component PulD [Burkholderia glumae
           BGR1]
          Length = 449

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/433 (15%), Positives = 125/433 (28%), Gaps = 54/433 (12%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVE-------------IGKG 47
           MR L    +    +   + +P  A +P +    +     +                IG  
Sbjct: 1   MRRLAVVLWFFAGVSCAAGSPVPASMPGLPPLPSVAGLSTGAGQAPLPAPPLVPLKIGDA 60

Query: 48  KKISIG-LNKVIILQV---PVDVQDVLVSDPTKADVVVHSPR------------TMYLFG 91
           K + +  +N   ++ +    +     ++S    AD  + S R              +L  
Sbjct: 61  KSVDLRFVNVAQVIDLVYADMLQSQYVISPDVLADTRLVSFRFDRTKGDIRDVLGDFLSS 120

Query: 92  KNVGQANV----ILI-----GHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVS 142
              G         +                    +   A     L + +      +    
Sbjct: 121 LGFGVTARNGVDYVFKRKDDDQKEADKQVFVYSPKYRTADYLSRLVQPLFSGQFTMNRAV 180

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-QVTLKVT 201
              V     +       A  + +           A   +     L  +  +  +V ++  
Sbjct: 181 PAAVGS-RAKADAPPTSAAAMVDQSSDTMVFLSSAKEIALLKSVLPQVDTKTGEVAIRAW 239

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           + EV  +  +  GFQ +   S  G     +   G    S        G       +  + 
Sbjct: 240 VYEVSTENDRTTGFQLAA--SILGGKLGVSLGVGTVDESANALRLHAGF-----LDAAIA 292

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV-----SSSTGATSVTTHDYGVVL 316
           AL+  +    +  P L   SG+      G             SS+    SVT  D GV+ 
Sbjct: 293 ALDSDSRFHVITSPNLRVESGKHGRLNVGQSVPVIDSVTYPNSSAAPLQSVTYQDAGVIF 352

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
              PT +    I   +  E+S+         + P+   RK +T++ L  G  +V+ GL +
Sbjct: 353 DVQPT-VKDDVIDTDVTVEISDFQRTSTGVNNSPTKNTRKVETSMTLRDGEVVVMGGLSE 411

Query: 376 DDIQQLKEGIPLL 388
                +  GI  L
Sbjct: 412 GKDSIVTSGIRWL 424


>gi|91791048|ref|YP_551999.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91700928|gb|ABE47101.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 566

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 81/248 (32%), Gaps = 26/248 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS-------FAADFGGKFVSEGGDFS 246
            QV++ V +  V  D     G        +   + +        A        +      
Sbjct: 324 RQVSVNVRVLSVALDDSDDYGINWDAVYKNLATASNAYSIALKTAFPIANGAGNLVISAP 383

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                       ++ AL     +  L   TL  ++ Q +    G +  Y   SS+T   +
Sbjct: 384 ATSGSRWAGSSAMISALSSQGRVTELTSSTLVTLNNQPSPVNVGRRVSYLQSSSTTQTAN 443

Query: 307 VT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYR 352
           V         T   G  +   P ++    I L+   ++S          G ++   P   
Sbjct: 444 VGSTSSLTPGTIQTGFSMTLIPHIIDSREILLQYSIDLSSLLQLTTISSGTSSIQAPDIS 503

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
                  V+L SG T+V+AG  +D++  +  G+   +    LG    +   +++   I +
Sbjct: 504 TSNFIQRVKLLSGETLVVAGFDQDNLSAVSNGV-GAADNVALG----SRNGSKKRNMIVV 558

Query: 413 AATPFLVK 420
              P L +
Sbjct: 559 MIQPNLAQ 566


>gi|297592282|gb|ADI47020.1| PilN [Escherichia coli]
          Length = 535

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 91/274 (33%), Gaps = 20/274 (7%)

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           + L+  FL+ +   +  ++ S + +   N     QV L V +  VR+    Q G   +  
Sbjct: 267 MVLATGFLTVTDTPRVLDTVS-RFVEARNREMRRQVVLNVEVLSVRKTRRDQAGIDWNAV 325

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
            S      +    F                      +  L AL     +  + + +    
Sbjct: 326 FSDGRLGLTLGGAFSSAADDIITSGVSIVDGKLTGSKAFLKALSSQGTVSVVTQNSAVTK 385

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGR----- 327
           +          Q  Y    ++    +V         T   G  +   P +    R     
Sbjct: 386 NMTPVPMQVASQQGYIEGVTTDTTANVGTSTSLNAATITTGFNMTLLPFIQPDARSLQLL 445

Query: 328 --IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
             + L  +        G +   +P+  ++  + T++L SG T++L+G  +   + +++G+
Sbjct: 446 FSMNLSDKPTFEVFESGGSRAQVPTVDLKTINQTIDLKSGQTVILSGFRQSGSKSVRQGV 505

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 P    L   +    ++T + +  TP ++
Sbjct: 506 ---GS-PAFFGLGGGTDSGDDDTILVVLITPHVI 535


>gi|284008046|emb|CBA74162.1| conjugative transfer protein lipoprotein PilN [Arsenophonus
           nasoniae]
          Length = 534

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/356 (12%), Positives = 110/356 (30%), Gaps = 25/356 (7%)

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
              + ++        +  +         +         +        ++   I  +  S 
Sbjct: 179 SGQIVIYALETRSFTLNFMDSQTDYQSRVVSGTTSKAGNSGGQSGNALSGDAITSQSTST 238

Query: 144 TV------VLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           T+       L G V+++                         + ++ ++  N   + QV 
Sbjct: 239 TIKSSLYADLQGAVKSMLTPGLGRMFLSAGNLTVTDVPRVLDTVERFVDERNQTLDRQVV 298

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           L + +  V +    Q+G   +   ++     S +  FGG   +                +
Sbjct: 299 LNIEVLSVEKRQKDQLGLDWNAVFNNGRLGLSLSQAFGGAAGNIMNGGFSVVDGRLAGSK 358

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TT 309
             L AL     +  + + + T  +    +     Q  Y    ++    +V         T
Sbjct: 359 VFLKALAEQAKVSVVTQQSNTTTNLSPVAMQVAEQEDYVAQVTTQSTANVGTATSIQPAT 418

Query: 310 HDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362
              G  ++  P ++  G+       I L           G ++ ++ + +++     V++
Sbjct: 419 ITTGFYINLLPNIMPDGQHLLLQFAINLSEPPTRRTFTSGESSVELLNTQLKTFTQRVKM 478

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +G T+VL+G  +   +  K+G+    + P    L    +    +  + +  TP L
Sbjct: 479 KTGQTLVLSGFQQASRKGSKQGV---GQ-PWFFGLGGGQQAEDGDRMLVVLITPVL 530


>gi|33152500|ref|NP_873853.1| putative phage-related secreted protein [Haemophilus ducreyi
           35000HP]
 gi|33148723|gb|AAP96242.1| putative phage-related secreted protein [Haemophilus ducreyi
           35000HP]
          Length = 374

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 95/287 (33%), Gaps = 46/287 (16%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192
            ++ +V    D +V +G    I  ++  +                 +S   V   + + G
Sbjct: 124 QADGQVFAHGDKLVFYGTPAEISRAKSVL-----------------TSLDTVSKEVVVTG 166

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
                    + EV+    +         GS         +   G  +     F     L+
Sbjct: 167 Y--------VFEVQTQEKE---------GSGINLFAKLLSGKLGINIGIKQSFENFITLN 209

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVT 308
             + + ++   +  +    ++ PTL   SG   +F+ G         K         S+ 
Sbjct: 210 MGNLDAMIELFKSDSRFHVVSSPTLRVKSGSKGNFSVGSDVPVLGSVKYDKEGRAVQSIE 269

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGT 367
               GV+   TPTV     I LRIQ ++S  V       + P+   R   T + + SG  
Sbjct: 270 YRTSGVIFDITPTVKRD-AIDLRIQQQLSNFVKTDTGVNNSPTLIKRDIVTDITVKSGEV 328

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           IVL GL ++   +   G   L KI              E+T+I +  
Sbjct: 329 IVLGGLAENKQTEGNTGFSFLPKI------LTGKSNRSEKTDIIVLL 369


>gi|320102660|ref|YP_004178251.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
 gi|319749942|gb|ADV61702.1| type II and III secretion system protein [Isosphaera pallida ATCC
            43644]
          Length = 1626

 Score = 92.5 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/226 (18%), Positives = 74/226 (32%), Gaps = 34/226 (15%)

Query: 225  GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG-- 282
              ++  A      FV   G      +L        + A +       +  P +T  +G  
Sbjct: 1381 NNTEQAATPTLAGFVPGAGATLGVSILSDLEVYLFMRAAQTDVRSNIIQAPKVTTFNGAF 1440

Query: 283  -----QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEV 336
                 Q+  F            +      V     G+ L+  P + +  R + L +    
Sbjct: 1441 AQVASQTQQFYVASVTPVVAFGAVAFTPDVQPLPIGITLNVQPVITADRRYVRLSLNPVF 1500

Query: 337  SEPVIGV--------------------------NAGDMPSYRVRKADTTVELPSGGTIVL 370
                                                 +P++ +   +TTV +P GGT++L
Sbjct: 1501 ISNASFQQFTVAGGVGGIGGIGGIGGGDGAQIATTIQLPTFTLFTVNTTVTVPDGGTVLL 1560

Query: 371  AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
             G+   + ++ + G+P+LSK P L  LFRN    R    I +  TP
Sbjct: 1561 GGVKTSEEERREFGVPVLSKTPYLNRLFRNIGIGRTSRSIMMMVTP 1606


>gi|217425271|ref|ZP_03456766.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 576]
 gi|217391876|gb|EEC31903.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia pseudomallei 576]
          Length = 349

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 79/246 (32%), Gaps = 26/246 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L VT+  V        G   ++   +          F    ++   D S   +  
Sbjct: 101 SRQVLLNVTVLSVSLQAGDAYGIDWNLVYKTMSAGFGITNPFHPTALTAPADMSAAVLSP 160

Query: 253 RFSFE---TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT 309
              F     ++ AL +   +R     ++T ++ Q        Q  Y    S+T   +V +
Sbjct: 161 TSRFNGTKLLIRALSQQGTVRRKTSASVTTLNNQPVPVQVATQTGYLASVSTTNTANVGS 220

Query: 310 --------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDM-----PS 350
                      G  +   P VL  G + L+  T +S      E         +     P 
Sbjct: 221 STALTPGVVTTGFNMTLLPHVLDDGTVMLQFSTNISSLLELKEVTSSTGGSGLARIQTPD 280

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410
             +R     V + SG T+V++G    +    + G+      P + AL       R    I
Sbjct: 281 VDMRNFLQRVAMKSGETLVISGYEGANDSLDERGV----GTPKMIALGGGYEAQRAREVI 336

Query: 411 FIAATP 416
            I  TP
Sbjct: 337 VILITP 342


>gi|126441183|ref|YP_001060902.1| Type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
 gi|126220676|gb|ABN84182.1| type II secretory pathway, component PulD [Burkholderia
           pseudomallei 668]
          Length = 448

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 75/462 (16%), Positives = 146/462 (31%), Gaps = 67/462 (14%)

Query: 1   MRYLQRTFFTMMS--IFLFSSNPSVAKLPPIK--EANAAVINISDVEIGKGKKIS-IGLN 55
           M+       T M+  +  F   P +  LP      A A  +       G    +  + + 
Sbjct: 1   MKRYGVLIVTAMAYSVAAFGVVPPLPMLPADASLTAAAPTLTPLKHVAGTSFDLRFVTVA 60

Query: 56  KVIILQVPVDVQDVLVSDPTKAD----------------------------VVVHSPRTM 87
           +++ L     +    V  P                                  V +   +
Sbjct: 61  QIVDLIYQEAMHTPYVLGPDVLSDGRLVSFRLDDRNRDVRTVMGDFLESLGFQVVTRNGV 120

Query: 88  YLFGKNVGQA------NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI--ADSNI-RV 138
               K  G A      +V +     +++  L  LIE  I    M L   +      +  V
Sbjct: 121 DYVTKKPGAAREKVDQDVFVYKPRYRRVDYLRALIEPMIGARAMPLMSPVSVPSQPVGAV 180

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           ++  +T    G V      + +V+     L   G +       K V  L  +    +V +
Sbjct: 181 QVPGETAAPAGDVP-AMPVETSVQARGDDLVIVGSHDEVALLRKVVPELDTV--PSEVVV 237

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           +  + EV              T ++   +    +        +    +          + 
Sbjct: 238 RGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDASAVRFTGPGVDA 288

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDYG 313
            + AL   +  + ++ P +  +SG+      G Q   +       S+ T   S+T  D G
Sbjct: 289 AISALNADSRFKVVSAPHVRIVSGERVRLNVGQQVPTQSSVSYQGSTGTPVQSITYQDAG 348

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           ++    PTV+    I L+++ E+S+ V         P+   R+  T   L  G  +VL G
Sbjct: 349 LIFDVEPTVMRE-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGEVVVLGG 407

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           L++D     + G   L   P   +       +++ TE+ +  
Sbjct: 408 LIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 443


>gi|187479017|ref|YP_787041.1| type IV pilus assembly protein (partial) [Bordetella avium 197N]
 gi|115423603|emb|CAJ50142.1| putative type IV pilus assembly protein (partial) [Bordetella avium
           197N]
          Length = 117

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 1/87 (1%)

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +P  R RKADT VEL  G   +++GL+    +     IPLL  +PI+G+ FR+ ++++E+
Sbjct: 2   IPVLRKRKADTMVELGDGEGFMISGLVSRQTKASVNKIPLLGDLPIIGSFFRSVQYSQED 61

Query: 408 TEIFIAATPFLVKPVAMR-DLSRPDDH 433
            E+ I   P L +P+A    L  P   
Sbjct: 62  NELVIVVPPRLRQPIARGVTLPLPGAR 88


>gi|167571699|ref|ZP_02364573.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis C6786]
          Length = 439

 Score = 92.1 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 95/283 (33%), Gaps = 26/283 (9%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197
           +  V + G   +  +   A+ +     ++        S  +  +    +        +V 
Sbjct: 168 AGAVQVPGESTSPANDAPAMPIEMGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 227

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++  + EV              T ++   +    +        +    +          +
Sbjct: 228 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 278

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312
             + AL   +  + ++ P +  +SG+      G Q   +       S+ T   S+T  D 
Sbjct: 279 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 338

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           G++    P V+    I +++  E+S+ V         P+   R+  T   +  G  IVL 
Sbjct: 339 GLIFDVEPIVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 397

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           GL++D     + G   L   P   +       +++ TE+ +  
Sbjct: 398 GLIQDRNATARSGYAWL---P---SFLDGRSSSKQRTEVLLVL 434


>gi|196228122|ref|ZP_03126989.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
 gi|196227525|gb|EDY22028.1| peptidase M56 BlaR1 [Chthoniobacter flavus Ellin428]
          Length = 1079

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/305 (14%), Positives = 86/305 (28%), Gaps = 73/305 (23%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGV 250
               Q+ ++    E+   + K    Q                          G      +
Sbjct: 358 PASPQIEIEAKFVEIHSPVAKSSDVQ---------------------AGDAEGQADRPTI 396

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------STGA 304
                F+ ++ +L +   +  L+ P +T  + Q A   +  +    T         +   
Sbjct: 397 FTDPQFQLIIRSLNQKKGVDILSSPRVTTRANQRAVVEAVREFRTPTEWEWRKESGTWKP 456

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP----------------VIGVNAGDM 348
           T   T + G+ L   P +   G + +   + V E                        ++
Sbjct: 457 TKFETKNLGISLEVEPRLGRDGTLEVHAISSVVEFLGFLDLDTGKTILASRTAADGNVEV 516

Query: 349 PSY----------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
           P              R+ ++TV L SG T  +A L +    +  E               
Sbjct: 517 PPVVPGHRSKGIYSERRKESTVNLKSGETFQIADLPETADTKALEK-------------- 562

Query: 399 RNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEAS 458
                +     I +  +P L+ P +    +  D   S     +      ++ + GPK+  
Sbjct: 563 -----HASRKRIMVFISPRLIAPASAAAGTGSDATGSPGAQGELVLHGTLD-LNGPKQMV 616

Query: 459 EVEGQ 463
            V G 
Sbjct: 617 AVSGA 621


>gi|262274287|ref|ZP_06052098.1| putative type III secretion system EscC protein [Grimontia hollisae
           CIP 101886]
 gi|262220850|gb|EEY72164.1| putative type III secretion system EscC protein [Grimontia hollisae
           CIP 101886]
          Length = 489

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 46/286 (16%), Positives = 93/286 (32%), Gaps = 11/286 (3%)

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELS---ETFLSQSGRNQYANSSSKKVMNL 187
              +   +      +     +   + + RA  +        +     +     +    N 
Sbjct: 193 FPGAQSLIAAAITNIGQFTNLTDEEMATRAYRVKLSQGEKQALEEDEKSTKVQALPGPNA 252

Query: 188 LNIAGEDQ-VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG-DF 245
           L + G  + V L   IA +     +Q+ F   +   ++   ++   D G    S G  D 
Sbjct: 253 LLVRGTQEEVKLAKRIAALIDVKRRQLLFSLKVYDIATERKENLGIDGGWVNGSRGIYDI 312

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
            V    +   F     AL      R++ E  L  +  Q   F             S    
Sbjct: 313 VVPPFTETKDFLKNFQALYSNGIARSVYETNLLVLENQQGQFGKKQT--ATLALVSNKQI 370

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLR----IQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
                +    L+ T  +L  G++  R     +    E      +   P    +   + V 
Sbjct: 371 QTEKIEADNSLYVTGRLLPSGQVQARVQYVEEALDDEGEESEGSQRPPRVSSQSMTSEVY 430

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
           +    T++L G      +Q   G+PL+S +P++G LF+ +  ++ +
Sbjct: 431 IKPDQTVILGGFDNTVTEQRITGVPLISHLPLIGNLFKYTSESKHK 476


>gi|323669655|emb|CBJ94777.1| pilus assembly protein [Salmonella bongori]
          Length = 560

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
            QV L V +  V     +Q+G   +I   S   + +   +  G   +           + 
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 372

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                      ++ AL     +  +        +          Q +Y   SS+T  T V
Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432

Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
                        G  +   P +   G + L++   +S+P          G +  +MP  
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           ++R       L +G  +VL G  + + +  K G        +LG        +   + + 
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548

Query: 412 IAATPFL 418
           I  TP L
Sbjct: 549 IIITPEL 555


>gi|327412816|emb|CAX67822.1| putative pilus assembly protein [Salmonella bongori]
          Length = 560

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 78/247 (31%), Gaps = 26/247 (10%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
            QV L V +  V     +Q+G   +I   S   + +   +  G   +           + 
Sbjct: 313 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNAASASVSILDSAT 372

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                      ++ AL     +  +        +          Q +Y   SS+T  T V
Sbjct: 373 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 432

Query: 308 T--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSY 351
                        G  +   P +   G + L++   +S+P          G +  +MP  
Sbjct: 433 GATTSLTPGMMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYT 492

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
           ++R       L +G  +VL G  + + +  K G        +LG        +   + + 
Sbjct: 493 KLRSLSQKTNLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLV 548

Query: 412 IAATPFL 418
           I  TP L
Sbjct: 549 IIITPEL 555


>gi|301019450|ref|ZP_07183622.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
 gi|299882211|gb|EFI90422.1| bacterial type II and III secretion system protein [Escherichia
           coli MS 196-1]
          Length = 358

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/338 (17%), Positives = 112/338 (33%), Gaps = 33/338 (9%)

Query: 95  GQANVILIGHDG----KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM 150
           G  N+ +    G          + +  R         R     S+I    VS +    G 
Sbjct: 21  GNMNIRIWTKKGVDFIAPYTPKEPVKPRYTWTYTPQYRSVAYLSDILGGYVSGSFNNSGA 80

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG----EDQVTLKVTIAEVR 206
           V +    + +   S           Y  +     +    +       D+V +   + EV+
Sbjct: 81  VISDDSLKGSSGASNYINRTGDILVYYGTKEDIAILKTLVTSLDTMSDEVVVSGYVFEVQ 140

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                  G   +    S   + S  A     F++          +   S + + + L+  
Sbjct: 141 TSQSDGSGILLAAKILSDKFNISVGAAGLDNFIN----------IRTGSIDAIFNLLKTD 190

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           +    ++ P L   +  SASF+ G         TV+++T   SV     GV+ + TP+ +
Sbjct: 191 SRFTVVSAPRLRVKNNASASFSVGSDVPVLGSVTVNNNTTTQSVEYRSSGVLFNVTPS-I 249

Query: 324 SPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
               + L+IQ ++S  V       + P+   R   T V L  G  I+L GL +    +  
Sbjct: 250 KSRTMDLKIQQQLSNFVTTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQKDSKAS 309

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            G           ++F +      +T+I +      V 
Sbjct: 310 SGW----------SVFGSRTSESNKTDIMVMLQVRKVD 337


>gi|126696034|ref|YP_001090920.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9301]
 gi|126543077|gb|ABO17319.1| Type II secretory pathway component PulD-like protein
           [Prochlorococcus marinus str. MIT 9301]
          Length = 572

 Score = 91.3 bits (225), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 94/305 (30%), Gaps = 46/305 (15%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDI- 209
             T +  Q    + E +L             K+           QV L V + +V     
Sbjct: 251 ATTDERLQTVTMVGEKYLIDLANGFLQKLDIKQ----------KQVALSVKVLDVNMSDK 300

Query: 210 ---LKQIG------FQHSITGSSSGPSKSF------AADFGGKFVSEGGDFSVKGVLDRF 254
              +K  G      F     G       SF                           D  
Sbjct: 301 NSSMKDYGGKLDDAFIIGSQGKIKSAFGSFLPVFPEGNSTDATTNPGINSSQRTTNFDNK 360

Query: 255 SFETVLHALERATAIRTLAEPTLTA---------------ISGQSASFTSGGQHLYKTVS 299
           SF  +L A       + LA PTL                   G       G +       
Sbjct: 361 SFFGLLEASIENGTTKVLASPTLLLSESSGSAGDGSSIGRKVGNEGFVEIGDKVPVDATK 420

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRK 355
              G+ + +    GV L      +     +   +   V+      N    G +     R+
Sbjct: 421 GDGGSCTYSFETVGVKLGAKILGIDQNDYVTFTMTPIVTGISGSFNIVGCGSVSKINNRR 480

Query: 356 ADT-TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            DT  + +  G T+VL G++++        +PLL  +P+LG LFR+ + ++++ E+ I  
Sbjct: 481 LDTGAIRIKDGETLVLTGVIQETDIDTTYKLPLLGDLPLLGGLFRSKQASKDKRELIILV 540

Query: 415 TPFLV 419
           TP ++
Sbjct: 541 TPKVL 545


>gi|330862439|emb|CBX72597.1| hypothetical protein YEW_HP33920 [Yersinia enterocolitica W22703]
          Length = 149

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 51/143 (35%), Gaps = 6/143 (4%)

Query: 277 LTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG-LRIQTE 335
           +  ++   A          K          + +   G +L  TP ++    +  + +   
Sbjct: 1   MVTLNNIQAVLDKNVTFYTKL--QGDKVAKLESITSGSLLRVTPRMIDSDGVKEVLLNLN 58

Query: 336 VSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP 392
           + +        ++  +P  +     T   L  G +++L G ++D   + +  IPLL  IP
Sbjct: 59  IQDGQQQAPLSSSEPLPEIQNSDISTQATLRVGQSLLLGGFIQDKQIESQNKIPLLGDIP 118

Query: 393 ILGALFRNSRFNREETEIFIAAT 415
           +LG LFR++              
Sbjct: 119 LLGGLFRSTNKQSHSVVRLFLIK 141


>gi|238755356|ref|ZP_04616698.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
 gi|238706391|gb|EEP98766.1| hypothetical protein yruck0001_7710 [Yersinia ruckeri ATCC 29473]
          Length = 540

 Score = 91.0 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 90/288 (31%), Gaps = 19/288 (6%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           +   ++++             +              + +N  N+    QV L V +  V 
Sbjct: 256 VTNTIKSMLTPDTGRMNLSAGVLTVTDTPRVLEKISRYINERNVELNRQVVLNVQVYSVE 315

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
           +    Q+G       +S     S    F G   +                +  + AL   
Sbjct: 316 KRTQDQLGIDLDAVFNSGSVGLSLTNAFTGSASNVLSGGVSILDGKGKGSKGFIKALSEQ 375

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
             +  + E +    +  +       Q  Y +  S+    +V        +T   G  +  
Sbjct: 376 ANVSVMTEASSMTTNLSAVPIQVALQQDYASGVSTQNTANVGSTSTITKSTITTGFNMTV 435

Query: 319 TPTVLSPG-RIGLRIQTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P ++    ++ L+    +S+         G  + ++   R++     V + SG T+VL+
Sbjct: 436 LPFLVPQSPKMQLQFAINISDDPTMRTFSSGDTSVELTKTRLKTFTQRVNMQSGQTLVLS 495

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G         ++G+         G L   +     +T + I  TP ++
Sbjct: 496 GYQSLGKTVDRQGV---GSFRFWG-LGGGANGENNKTMLVILITPVIL 539


>gi|149195497|ref|ZP_01872574.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
           TB-2]
 gi|149134357|gb|EDM22856.1| type II secretion pathway protein XcpQ [Caminibacter mediatlanticus
           TB-2]
          Length = 336

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 77/213 (36%), Gaps = 19/213 (8%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           I  V  +  +++G +            +   D            ++  +    +F++ ++
Sbjct: 104 ITAVNNNKARKLGVKLDFNNPFKNILLNIVTDTA----------TISTLPSGVNFQSFIN 153

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TGATSVTTHDYGV 314
            L      +T+ +PTL  I   +    S     +   S +          T +   D G+
Sbjct: 154 FLNSKNIAQTIDKPTLRLIDSHNYVLESVHSIPFTETSVTIDKNGNPVTKTDLKYKDIGL 213

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL-PSGGTIVLAGL 373
            ++     +S   I   +   V   V  +   + P    +  +T ++L     + ++AGL
Sbjct: 214 KIYIKNVFISKNSIDFDLDIYVQNIV-SILQNNQPVVDTKHFNTHIQLTKKNCSYLIAGL 272

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                    + +P+L  +P +G LFR+S  + +
Sbjct: 273 RSVSTISQNKKVPVLGDLPFVGLLFRSSDKSVQ 305


>gi|167950797|ref|ZP_02537871.1| type IV pilus secretin PilQ [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 263

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/227 (18%), Positives = 75/227 (33%), Gaps = 45/227 (19%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG------- 235
           +++  L+I    QV ++  I     D  K +G +   T S+S  S       G       
Sbjct: 38  RLLQRLDIPVR-QVLIESRIVIANNDFTKALGVRFGATTSASAGSNEALIAGGMPGHISS 96

Query: 236 ------------------------------------GKFVSEGGDFSVKGVLDRFSFETV 259
                                                     G    + G +  +  +  
Sbjct: 97  FGIDKGTFMTTTTGQPIAAGIEIPAGSGNEALMVNLPATAPSGAINFLVGKVGSYLLQLE 156

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L A++       ++ P +       A+   G +  Y+  +SS GATSV+  +  + L  T
Sbjct: 157 LSAMQSEGKGEVISSPRVITSDQNKATIKQGVEIPYQEATSS-GATSVSFKEAVLKLDVT 215

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
           P +    RI + ++     P    +   +P    RK +TTV + +G 
Sbjct: 216 PHITPDDRIRMDLEINKDSPDFSRSVLGVPPLDTRKIETTVLVDNGE 262


>gi|71901990|ref|ZP_00684038.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
 gi|71728245|gb|EAO30428.1| general secretory pathway protein D precursor [Xylella fastidiosa
           Ann-1]
          Length = 106

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 29/87 (33%), Positives = 43/87 (49%), Gaps = 2/87 (2%)

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
               R+  T   + SG TI+LAGL+  +  +   G+P LSK+PI+G LF     N    E
Sbjct: 8   QINTRRIKTEAAVQSGDTIMLAGLIDSNSGKGSNGVPFLSKVPIVGGLFGTKAQNNNRRE 67

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSV 436
           I +  TP +V+    ++     D YS 
Sbjct: 68  IIVLLTPEIVR--NPQEARNLTDEYSQ 92


>gi|225677418|ref|ZP_03788385.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590562|gb|EEH11822.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 500

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 86/267 (32%), Gaps = 48/267 (17%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +                    
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             +    ++           ++  L++      ++ P + AI+ Q A  +    H+Y   
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349

Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
                   S+ T  T + +   GVVL   P++      I + I   +S            
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409

Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                       D+P   +R+ ++ +++ SG  +V+ GL++    +      LL +    
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEVMVIGGLIEHREDKQS----LLHQ---- 461

Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
               ++ R        E  I     +V
Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484


>gi|332091472|gb|EGI96557.1| general secretion pathway protein D domain protein [Shigella boydii
           3594-74]
          Length = 93

 Score = 90.6 bits (223), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLL 374
           +L  TP +     + + I+ EVS+     +   +  +  RK  TTV    G  IVL GL+
Sbjct: 1   MLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLKTTVLANDGELIVLGGLM 58

Query: 375 KDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
            D   +    +PLL  IP++G LF+++   +E
Sbjct: 59  DDQAGESVAKVPLLGDIPLIGNLFKSTADKKE 90


>gi|325529072|gb|EGD06072.1| putative type II secretory pathway [Burkholderia sp. TJI49]
          Length = 220

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 63/183 (34%), Gaps = 18/183 (9%)

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSP----------------GRIGLRIQTEVSEPVIGV 343
                +S+ +   G  +  TP ++                    + + I  +    V G 
Sbjct: 5   QGYQDSSLYSVTTGTSIKVTPMIVDDAIRNAAAVSGSPASNPQSVMMSIDIQDGNIVPGQ 64

Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
              ++P  + R   T   +  G ++++AG   D++   K G+P LS IP++G LF+ +  
Sbjct: 65  AVSNVPVIQQRNIVTKTMIDEGRSLLIAGFNDDEVHLNKSGVPWLSDIPLIGNLFKYTDK 124

Query: 404 NREETEIFIAATPFLVKPVA--MRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVE 461
           +    E F   TP +V   +    D S  +       DA      R          +   
Sbjct: 125 SGNHMERFYLLTPRVVSTASMYAPDGSPVNPGVDAPADASGVSMYRPPDNDIAVPLTPQP 184

Query: 462 GQN 464
              
Sbjct: 185 LPG 187


>gi|91791253|ref|YP_552203.1| type II and III secretion system protein [Polaromonas sp. JS666]
 gi|91701134|gb|ABE47305.1| type II and III secretion system protein [Polaromonas sp. JS666]
          Length = 556

 Score = 90.2 bits (222), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 99/289 (34%), Gaps = 32/289 (11%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ-----VTLKVTIAEVRRDI 209
           Q    A ++S +  + +       +  +KV +   +  ++Q     V++ V +  V    
Sbjct: 273 QMLSNAGKVSASPATGTITVTDTPAVMEKVAD--FVTAQNQALNRLVSVNVRVLSVEISE 330

Query: 210 LKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV------KGVLDRFSFETVLHAL 263
               G       ++   +  ++      F +  G  ++                 +L AL
Sbjct: 331 GDDYGINWDAVYANLSAANPYSLALKTAFPTATGAGNLIISAPAGSNSRWAGSSAMLSAL 390

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--------HDYGVV 315
                +  L   TL  ++ Q A    G +  Y   SS T   +V +           G  
Sbjct: 391 SMQGRVSELTSATLVTLNNQPAPVNVGRKVSYLASSSQTQTANVGSTVSLTPGVIQTGFS 450

Query: 316 LHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +   P ++    + L+   ++      +    G ++   P          V L SG T+V
Sbjct: 451 MTIVPHIIDGNELLLQYSLDLSSLLKLNTISSGTSSIQAPDVATSNFIQRVRLKSGETLV 510

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +AG  +D++  +  G+   ++  +LG    +   + +   + +   P +
Sbjct: 511 VAGFDQDNLTAVANGV-GAAENKLLG----SRTGSTKRQILVVLIQPNI 554


>gi|58698373|ref|ZP_00373287.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630071|ref|YP_002726862.1| type II secretion system protein, putative [Wolbachia sp. wRi]
 gi|58535127|gb|EAL59212.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225592052|gb|ACN95071.1| type II secretion system protein, putative [Wolbachia sp. wRi]
          Length = 500

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +                    
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 289

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             +    ++           ++  L++      ++ P + AI+ Q A  +    H+Y   
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349

Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
                   S+ T  T + +   G+VL   P++      I + I   +S     V      
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 409

Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                       D+P   +R+ ++ +++ SG  +V+ GL++    +      LL +    
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 461

Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
               ++ R        E  I     +V
Sbjct: 462 ----KSKRLANNIRTVETVIFLKATIV 484


>gi|323970458|gb|EGB65719.1| R64 PilN family protein type IVB pilus formation outer membrane
           protein [Escherichia coli TA007]
          Length = 336

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 77/242 (31%), Gaps = 19/242 (7%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L V +  VR+    Q G   +   S      +    F                  
Sbjct: 99  RRQVVLNVEVLSVRKTRRDQAGIDWNAVFSDGRLGLTLGGAFSSAADDIITSGVSIVDGK 158

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
               +  L AL     +  + + +    +          Q  Y    ++    +V     
Sbjct: 159 LTGSKAFLKALSSQGTVSVVTQNSAVTKNMTPVPMQVASQQGYIESVTTDTTANVGTSTS 218

Query: 308 ---TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               T   G  +   P +    R       + L  +        G +   +P+  ++  +
Sbjct: 219 LNAATITTGFNMTLLPFIQPDARSLQLLFSMNLSDKPTFEVFESGGSRAQVPTVDLKTIN 278

Query: 358 TTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
            T++L SG T++L+G  +   + +++G+      P    L   +    ++T + +  TP 
Sbjct: 279 QTIDLKSGQTVILSGFRQSGSKSVRQGV---GS-PAFFGLGGGTDSGDDDTILVVLITPH 334

Query: 418 LV 419
           ++
Sbjct: 335 VI 336


>gi|320107861|ref|YP_004183451.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926382|gb|ADV83457.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 638

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/357 (16%), Positives = 104/357 (29%), Gaps = 71/357 (19%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHG-MVRTIQDSQRAVELSET----------FLSQ 170
            L    R     + I V   S  VV+ G      +      EL+            +   
Sbjct: 278 DLANMTRALFGLTQIAVNTQSGAVVIRGPQAVVHRVHDLFTELASRTSDILFDINIYEVD 337

Query: 171 SGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK--------QIGFQHSITGS 222
               +    +       +++A   Q  +         +            +    S    
Sbjct: 338 KSTTRNIGFAPPTSATAIDVASTAQKLI-------SDNQSLLSQSISSGALTLSGSTYDQ 390

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF------ETVLHALERATAIRTLAEPT 276
                    A       S        G  D           T L+ L  +T  R L    
Sbjct: 391 ELQEVAFLVAAGVSGSSSFTSILGTLGSFDGIPLLGISMSSTSLNMLLNSTDARMLNALQ 450

Query: 277 LTAISGQSASFTSGGQHLYKTVSSST--------------------------------GA 304
           L +   Q  +F  G ++   T  +++                                  
Sbjct: 451 LRSSDRQEVTFRVGSRYPILTAITTSASSSDVANELAAAGVSSSVIAQLTGSSGSGSTST 510

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPS 364
             +   D G+ L  TP VL  G + L +  ++     G    D+P    R   + V +P 
Sbjct: 511 PQIQFEDIGLTLKITPRVLRSGEVQLDLDFKLESLA-GTGVDDIPILNNRALKSVVTIPP 569

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE--ETEIFIAATPFLV 419
           G T +LA L+  +  +  +G+P L  +P     F+++  N +  + E+ I  TP +V
Sbjct: 570 GETTMLAALVSTNETKALDGVPGLDNLPG----FQSTDRNADGAKDELLITVTPHIV 622


>gi|58696766|ref|ZP_00372303.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58537040|gb|EAL60176.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila simulans]
          Length = 495

 Score = 90.2 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 41/267 (15%), Positives = 87/267 (32%), Gaps = 48/267 (17%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +                    
Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLRDGTKSII 284

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             +    ++           ++  L++      ++ P + AI+ Q A  +    H+Y   
Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344

Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
                   S+ T  T + +   G+VL   P++      I + I   +S     V      
Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGIVLIIHPSINIDTSEIFMDIHPTLSRINGYVKDPDIE 404

Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
                       D+P   +R+ ++ +++ SG  +V+ GL++    +      LL +    
Sbjct: 405 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQS----LLHQ---- 456

Query: 395 GALFRNSRFNREET--EIFIAATPFLV 419
               ++ R        E  I     +V
Sbjct: 457 ----KSKRLANNIRTVETVIFLKATIV 479


>gi|168701297|ref|ZP_02733574.1| hypothetical protein GobsU_17361 [Gemmata obscuriglobus UQM 2246]
          Length = 1374

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 79/239 (33%), Gaps = 38/239 (15%)

Query: 219  ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
            I  +S   +     ++     + GG       L+     T L   +       +  P LT
Sbjct: 1118 IRATSFNRAIPGFGNYPNTPGNNGGISLGLAFLNDIQVYTFLEMAQGDQRSNIMQAPKLT 1177

Query: 279  AISGQSASFTS----------------------GGQHLYKTVSSSTGATSVT------TH 310
              +GQ+A+ T                         Q    +    T + +V         
Sbjct: 1178 MFNGQTATLTVAETQFFVTNVQVVSVNGQIVFIPQQQQLPSSGQGTLSITVQAVVSADRR 1237

Query: 311  DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR----------KADTTV 360
               + L     V +   + L   T    PV    +   P    +             TTV
Sbjct: 1238 FVRLNLPVQLGVQAGAAVPLFPITTFITPVFEGGSQGQPIPFTQFLQQPSFTLLDIQTTV 1297

Query: 361  ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
              P GGT++L GL +    + + G P LSKIP L  LF+N    RE T + I  TP ++
Sbjct: 1298 VCPDGGTVLLGGLKRLSESRNEFGPPFLSKIPYLNRLFKNVGVGRETTHLMIMVTPRII 1356


>gi|70732014|ref|YP_261759.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
 gi|68346313|gb|AAY93919.1| type IV pilus protein, PilN [Pseudomonas fluorescens Pf-5]
          Length = 613

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 46/280 (16%), Positives = 83/280 (29%), Gaps = 26/280 (9%)

Query: 151 VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRR 207
           V+ +  +Q A  +  +  + +           ++ + L         QV   V I EV  
Sbjct: 287 VKAMLSTQPAGRIFLSRSTGTLTVSDRPEVLNRIASYLQSTNRNITRQVLFNVKIFEVNF 346

Query: 208 DILKQIGFQHSITGSSSGPSKSFA-----ADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
               Q          S       +     A      +S                  V+ A
Sbjct: 347 TDRDQTAVNWKAVYKSVSGRWGLSLANKVAGISTDAISGSVSILDTSSSPWAGSSAVIQA 406

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT--------THDYGV 314
           L     I  +  P++T ++ Q A    G    Y   SS+T   SV         T   G 
Sbjct: 407 LSEQGRISDVRSPSITTLNLQPAPIQIGNVKSYVASSSTTTTASVGSSTSLTPATITSGF 466

Query: 315 VLHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
            +   P ++          I +  +   +      ++     +  + A   V L SG T+
Sbjct: 467 NMMLLPKIIDRDNMLLMISISMSSKPTFTTFTSNGSSVQTADFDTKNAAPKVLLRSGQTL 526

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
           VL G  ++     K G+         G L  +   + + +
Sbjct: 527 VLTGFEENTENADKTGV---GDASFFG-LGGSRTRSSDHS 562


>gi|50119484|ref|YP_048651.1| putative type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610010|emb|CAG73449.1| putative Type IV pilus protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 554

 Score = 89.0 bits (219), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 82/254 (32%), Gaps = 23/254 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++ LN+     V L V++  V+R    Q     S+ G          A       + 
Sbjct: 306 ESYIDSLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVGKRLDRFGLTLAGTPTATTAV 365

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                            +  ALE    +  +     T  +   A F   GQ +Y     +
Sbjct: 366 SSAGINVVDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRSQKT 425

Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346
           + + +  T          G  +   P +   G I L+     S+P          G    
Sbjct: 426 SVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSKDGNTKM 485

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404
           +MP   VR     V L  G T++++G    ++   +EG   P    + + G         
Sbjct: 486 EMPYTTVRSLSERVNLKPGQTLIVSGYNSRNLTASREGAFDP---DVTVAG---GGKSSE 539

Query: 405 REETEIFIAATPFL 418
            ++  + IA TP L
Sbjct: 540 TDDVTLIIAVTPVL 553


>gi|195953100|ref|YP_002121390.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932712|gb|ACG57412.1| Type II secretory pathway component PulD-like [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 488

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 76/232 (32%), Gaps = 24/232 (10%)

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           ++L +     +++           +      ++   +      L   +++ +L+ALE+  
Sbjct: 250 NLLNEYSTGINLSALFQHLKNLNLSLTAPITLTNPSNSLFNAGLSGSNYDALLNALEQYG 309

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-------------STGATSVTTHDYGV 314
             +++   T T +  Q   +       Y +  +                   V+  + G 
Sbjct: 310 KTKSIDSETYTVLPNQPIVYAPTNTQSYISSYNIYIPPTVAGVVSTPAYIPIVSYLNTGT 369

Query: 315 VLHFTPTVLSPGRIGLR-----------IQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
            +   P + +  ++ +                ++           P    + +  T  L 
Sbjct: 370 SITILPRLANNKKLMVDVYYSQNTPQNLNTQNITISQGVTVPIQFPEVSSQNSVLTSVLK 429

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
            G TI L   + D  +  + GIP L +IP++  LF N+     + +  I  T
Sbjct: 430 PGQTIALISSVYDLKKNNEAGIPFLIRIPLIKYLFGNTDKYSNKVQFIITIT 481


>gi|330890298|gb|EGH22959.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 356

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 26/225 (11%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                + T        +    + ++V++ L+     QV ++  I EV  D   Q G Q  
Sbjct: 133 TIQADATTNTLLISAPEPLYRNLREVIDQLDQR-RAQVVIESLIVEVSEDDANQFGVQWQ 191

Query: 219 ITGSSSGPSKSFAADFGGKFVSEG-----------------GDFSVKGVLDRFSFETVLH 261
               +           G    + G                 G  ++ G+ +    + +  
Sbjct: 192 TGNLNGSGGFGGVNLGGSGLNTSGSTSIDVLPPGLNVGVVRGAVTIPGIGEVLDLKVLAR 251

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV--------SSSTGATSVTTHDYG 313
           AL+       L+ P L  +  ++AS   G    + T         +S+    +V   + G
Sbjct: 252 ALKSKGGSNVLSTPNLLTLDNEAASIFFGQTIPFVTGSYVTGGGGTSNNPFQTVQREEVG 311

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + L+  P +   G + L I  EVS      +         R  DT
Sbjct: 312 LKLNVRPQISEGGTVKLDIYQEVSNVDQRASLASGTVTNKRAIDT 356


>gi|284006612|emb|CBA71873.1| phage secreted protein [Arsenophonus nasoniae]
          Length = 334

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 73/203 (35%), Gaps = 10/203 (4%)

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
           GS         +   G  +    ++     ++  + + ++      +    ++ PTL   
Sbjct: 138 GSGINLLAKLLSGKLGINIGIKQNYENFITINTGNLDAMIELFRTDSRFHVVSSPTLRVK 197

Query: 281 SGQSASFTSGGQHL---YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
           SG   +F+ G         T        SV     GV+    PT +    I L+IQ ++S
Sbjct: 198 SGSKGNFSVGSDVPVLSSVTYQDGRPVQSVEYRSSGVIFDIQPT-IKSQAIDLKIQQQLS 256

Query: 338 EPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA 396
             V         P+   R   T V + SG  IVL GL ++ +++   G   L   P    
Sbjct: 257 NFVKTDTGVNQSPTLIKRDIVTDVTVKSGDVIVLGGLAENKLEEGGTGFSFL---P--KG 311

Query: 397 LFRNSRFNREETEIFIAATPFLV 419
                  +R +T+I +     ++
Sbjct: 312 FLSGKSTSRTKTDIVVLLQVKVI 334


>gi|161789259|ref|YP_001595645.1| hypothetical protein BMSA_0058 [Vibrio sp. 23023]
 gi|161761384|gb|ABX77030.1| Hypothetical protein BMSA_0058 [Vibrio sp. 23023]
          Length = 503

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/345 (16%), Positives = 106/345 (30%), Gaps = 31/345 (8%)

Query: 91  GKNVGQA-NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVLH 148
           GK  G   N  + G           ++      +   L+    +  +      +    L 
Sbjct: 174 GKATGSDQNPHVEGQFINVAYKNVDVVSDIATGIRAILKADPKNGPDTETTKTTGDSSLV 233

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G V+ I                           + ++N        QV L + + E R +
Sbjct: 234 GEVQVIPSLSSI---------SVRTTPERMRKVESLVNRYQRELSKQVLLNIQVLEFRSN 284

Query: 209 ILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           +  + G   + +  ++ G  + F        +  G   + KGV       + +  LE+  
Sbjct: 285 LGHEKGIDWNVVRNTAHGALQFFIPGTNTVSLDAGYGLAFKGVGQWNGTNSFIKVLEKQG 344

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTP 320
            + T    T   ++ Q A  +      Y +  SS  +  V +          GV +  TP
Sbjct: 345 TVSTKTPVTALVLNNQPARISQTLTKPYLSNISSESSEGVVSSSVTRDKQTEGVDMMVTP 404

Query: 321 TVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLK 375
            V +     RI  ++    S+    VN   +     R++  T    L  G T V+  + +
Sbjct: 405 NVKNQFVWLRISGKLTKIASDHTEDVNNIKLRFLDTRESQITFTNKLRYGQTYVIGSVKQ 464

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                 +     LS    LG +  +        E  +  TP  V 
Sbjct: 465 TSTTAERNESFWLS---WLGGM-GSKVDTV---ETLVLLTPTRVD 502


>gi|167564548|ref|ZP_02357464.1| Type II secretory pathway, component PulD [Burkholderia
           oklahomensis EO147]
          Length = 400

 Score = 88.3 bits (217), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 86/257 (33%), Gaps = 20/257 (7%)

Query: 142 SDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA----GEDQVT 197
           +  V + G   +      A+ +     ++        S  +  +    +        +V 
Sbjct: 150 AGAVQVPGEPISPASDAPAMPIETGVQARGDDLVIVGSHDEVALLRKVVPELDTAPSEVV 209

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++  + EV              T ++   +    +        +    +          +
Sbjct: 210 VRGWVYEVANTDS---------TNTAWSIAVRMLSGQLRVSSGDTSSDTSAVRFTGPGVD 260

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-----TVSSSTGATSVTTHDY 312
             + AL   +  + ++ P +  +SG+      G Q   +       S+ T   S+T  D 
Sbjct: 261 AAISALNADSRFKVVSSPHVRIVSGERVRLNVGQQVPTQSSVSYQGSNGTPVQSITYQDA 320

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           G++    PTV+    I +++  E+S+ V         P+   R+  T   +  G  IVL 
Sbjct: 321 GLIFDVEPTVMRE-VIEVKVHEEISDFVATKTGVDTSPTKNTRQLQTVTRMKDGEVIVLG 379

Query: 372 GLLKDDIQQLKEGIPLL 388
           GL++D     + G   L
Sbjct: 380 GLIQDRNATARSGYAWL 396


>gi|261819950|ref|YP_003258056.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pectobacterium wasabiae WPP163]
 gi|261603963|gb|ACX86449.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Pectobacterium wasabiae WPP163]
          Length = 554

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 48/254 (18%), Positives = 81/254 (31%), Gaps = 23/254 (9%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +  ++ LN+     V L V++  V+R    Q     S+            A       S 
Sbjct: 306 EGYIDNLNVRMNRMVKLMVSVYSVQRKGSSQTSLDWSVVAKRLDRFGLTLAGTPTATTSI 365

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                            +  ALE    +  +     T  +   A F   GQ +Y     +
Sbjct: 366 SSAGINVIDGKFAGTTALFRALETQGKVSVVMAHEATTTNLVPAPFQIAGQMVYLRNQKT 425

Query: 302 TGATSVTT-------HDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAG 346
           T + +  T          G  +   P +   G I L+     S+P          G    
Sbjct: 426 TVSENYATTDMEPGSITTGTQMTLLPDIRDEGDIQLQFNFSHSDPAQLRKESSEDGRTKM 485

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFN 404
           +MP   VR     V L  G T++++G    ++   +EG   P    + + G         
Sbjct: 486 EMPYTTVRSLSERVNLRPGQTLIVSGYNSRNLTTSREGAFDP---DVTVAG---GGKSSE 539

Query: 405 REETEIFIAATPFL 418
            ++  + IA TP L
Sbjct: 540 TDDVTLIIAVTPVL 553


>gi|259909855|ref|YP_002650211.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
           Ep1/96]
 gi|224965477|emb|CAX57009.1| Type IVB pilus formation outer membrane protein [Erwinia pyrifoliae
           Ep1/96]
 gi|283479947|emb|CAY75863.1| Outer membrane lipoprotein bfpB; Bundle-forming pilus B; Flags:
           Precursor [Erwinia pyrifoliae DSM 12163]
          Length = 548

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243
           +N  NI    QV L V +  V +    ++G    ++   S G S + A     + +  GG
Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              + G     S    + AL +   +  L + +    +  +       Q  Y + +S+  
Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420

Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348
             +V        +T   G  +   P ++           I +  +  + +      + ++
Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
              R++  +  V + SG T+VL+G          +G+          AL   +  +   +
Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536

Query: 409 EIFIAATP 416
            + I  TP
Sbjct: 537 TLVILITP 544


>gi|149925851|ref|ZP_01914115.1| type II and III secretion system protein [Limnobacter sp. MED105]
 gi|149825968|gb|EDM85176.1| type II and III secretion system protein [Limnobacter sp. MED105]
          Length = 531

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 81/256 (31%), Gaps = 31/256 (12%)

Query: 202 IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE---------GGDFSVKGVLD 252
           + +V  +    +G +  +  +  G + +  +   G   +                    +
Sbjct: 241 VLQVDLNDSNNMGVRWELYKAGGGINTAPDSSIAGASSTADRITQLTRTASGIETLIFGE 300

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----- 307
            FS   ++  L+    ++TL++P +  ++G + +   G    + +   S     V     
Sbjct: 301 NFSTNFLIDFLKSQGDVKTLSQPKIGLMNGTNGNIRVGQSTTFVSRVGSQIVNGVAQSTA 360

Query: 308 --TTHDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
                  G+ +  T             I +     +          ++P    R+  T V
Sbjct: 361 DTQNLRTGLEVSLTGEAHDSTIYTRINISITELLALKRFTALGVDLNLPEVADRELKTQV 420

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G TI+L G+     Q   +    L          R+   + ++TE+ +   P L+ 
Sbjct: 421 RCRPGDTILLGGITVSRAQDDFQS--GLGT--------RSRTESTKQTELVVTIRPRLLL 470

Query: 421 PVAMRDLSRPDDHYSV 436
              + +L +P      
Sbjct: 471 FGEVAELEQPAAKIKR 486


>gi|310765449|gb|ADP10399.1| Type IVB pilus formation outer membrane protein [Erwinia sp.
           Ejp617]
          Length = 548

 Score = 87.9 bits (216), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 87/248 (35%), Gaps = 22/248 (8%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH-SITGSSSGPSKSFAADFGGKFVSEGG 243
           +N  NI    QV L V +  V +    ++G    ++   S G S + A     + +  GG
Sbjct: 303 VNERNIELNRQVMLNVQVYSVEKQQSDRLGIDWKAVFKDSLGLSFTNAYTEASEAMMSGG 362

Query: 244 DFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
              + G     S    + AL +   +  L + +    +  +       Q  Y + +S+  
Sbjct: 363 VSIIDGKGKGSS--AFIKALAQQANVSMLTQASSMTTNLSAVPIQVALQQDYASNASTEN 420

Query: 304 ATSV--------TTHDYGVVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDM 348
             +V        +T   G  +   P ++           I +  +  + +      + ++
Sbjct: 421 TANVGSSSSISKSTITTGFNMTVLPYLIPHTSRMQLQFAINMSDEPTIRKFTSENTSVEL 480

Query: 349 PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREET 408
              R++  +  V + SG T+VL+G          +G+          AL   +  +   +
Sbjct: 481 MKTRLKTFNQRVIMSSGQTLVLSGYQSMSNTANHQGV---GSSHFF-ALGGGAEGDVNRS 536

Query: 409 EIFIAATP 416
            + I  TP
Sbjct: 537 TLVILITP 544


>gi|242279172|ref|YP_002991301.1| type II secretory pathway component PulD-like protein
           [Desulfovibrio salexigens DSM 2638]
 gi|242122066|gb|ACS79762.1| Type II secretory pathway component PulD-like protein
           [Desulfovibrio salexigens DSM 2638]
          Length = 497

 Score = 87.9 bits (216), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/251 (17%), Positives = 80/251 (31%), Gaps = 31/251 (12%)

Query: 182 KKVMNLLNIAGEDQVTLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV 239
            K +  LN     QV L V +   E+ R+    +GF       +   S S         +
Sbjct: 253 GKYIKSLNTKMGRQVALAVKVWALEMNRNA--DVGFDIESMLKAGQSSFSMLGGQPYTTL 310

Query: 240 SEGGDFSVKGVLDR-FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
           S  G  +   +       + +L AL++      L   +   ++ Q+       +  Y   
Sbjct: 311 SGAGTLTAAILDGNWKDTKLMLRALKQRGRTTLLTSGSGIVMNNQALPVQVVKRDTYLAG 370

Query: 299 SSSTGATSVTT--------HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVN 344
            SST   +              G  +   P +++  +  L+    +S      E   G  
Sbjct: 371 ISSTTTENSMQTSELTPGEVSTGFSMTVIPHIMNNRKAILQYNITLSSLDSMDEFTSGDL 430

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
              +P    R     V++  G T+VLAG  ++  QQ K           +G         
Sbjct: 431 TIQLPQVSTRSFSQRVKMKCGQTLVLAGFEQETDQQSK----------GIGISAGGHSQK 480

Query: 405 REETEIFIAAT 415
             ++   I  T
Sbjct: 481 YGKS--LIIIT 489


>gi|290243131|ref|YP_003494801.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
 gi|288945636|gb|ADC73334.1| OmpA/MotB domain protein [Thioalkalivibrio sp. K90mix]
          Length = 611

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 60/380 (15%), Positives = 120/380 (31%), Gaps = 41/380 (10%)

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS 180
             +   +    A  ++ VE     ++L    R I  + +  EL E  + Q      +   
Sbjct: 132 GSVGDLIEALEAVRDVAVEYRGGHLLLRSDSRYILSAPQNEELVERLVEQIEDLGGSAVR 191

Query: 181 SKKVMNLLNIAGE-------DQ-----------VTLKVTIAEVRRDILKQIGFQHSITGS 222
            +    ++            +Q           V L++ + +VR +  ++ GF  +    
Sbjct: 192 GELDAGVITYRAAPNAHEDIEQYVERAARNAAVVHLQLALLDVRLNREERKGFNWNELAV 251

Query: 223 SSGPSKSFAADFGGKFVSEG-GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
             G   +   +  G+ ++        +   +  S   VL+AL       T  + TLT ++
Sbjct: 252 RMGSLVNTDVEQLGEMLTFTRQGVGAEVQRNDVSVTAVLNALSEYGDATTEQDITLTTVA 311

Query: 282 GQSASFTSGGQHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPG------- 326
           G      SGG+  +     +T           SV T   G+ +  TP   +         
Sbjct: 312 GSEVDMRSGGEIPFVGDLDTTVSGESNIRSGASVDTQSVGIEVAITPRYDASTDLVTSSI 371

Query: 327 RIGLRIQTEVSEPVIGVNAGDM--PSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            + L    ++ E  +G+  G +  P  +         L  G   ++ G+  D + Q    
Sbjct: 372 DMDLTDVVQIREFDVGLEGGTLSHPELQDLSFTNISRLRPGEATLIGGIAYDQVDQDFTS 431

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFF 444
           +  L       A   + R + +   +FI   P +       D   P    +   D     
Sbjct: 432 LAGLED-----AKAGSQRISTDRHAMFILLRPTVTVFTDEGDDLLPLPGTARACDTSVVS 486

Query: 445 FNRVNKIYGPKEASEVEGQN 464
                ++     A    G +
Sbjct: 487 IGEDEELVETTAAYFRSGSD 506


>gi|293602243|ref|ZP_06684692.1| PilN family type IV pilus biogenesis protein [Achromobacter
           piechaudii ATCC 43553]
 gi|292819386|gb|EFF78418.1| PilN family type IV pilus biogenesis protein [Achromobacter
           piechaudii ATCC 43553]
          Length = 582

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 82/249 (32%), Gaps = 27/249 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSIT----GSSSGPSKSFAADFGGKFVSEGGDFSVK 248
             Q    +T+A V+R      G   +        + G + + A        S        
Sbjct: 318 TRQALFNITVAVVQRTETDDQGLDLTAVYKSLNGNYGITVANAFTAASSAGSASIGILDT 377

Query: 249 GVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                  F   + +L AL     +  + +P++T ++ Q        Q  Y    S+T   
Sbjct: 378 ATGTAGQFAGSKAILRALSSQGRVSIVTQPSVTTLNYQPVPVQVAKQTSYLAAVSNTATA 437

Query: 306 SVT--------THDYGVVLHFTPTVLSPGRIGLRIQTEVSEP------VIGVNAGDMPSY 351
            V         T   G  +   P ++   ++ L+    +S          G N+ ++P  
Sbjct: 438 QVGSTSALTPGTVTTGFSMDLLPFMIDSEQMLLQFTMNLSTDPRLRTVTSGDNSIEVPEV 497

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-I 410
             R     V L SG T++L+G  ++  +  + G+   S       L           E +
Sbjct: 498 DSRIFSQRVRLRSGQTLILSGFEQNVDRGNRSGMFSPSN-----WLTGGGGSTNNRREVV 552

Query: 411 FIAATPFLV 419
            I  TP ++
Sbjct: 553 VILITPIVL 561


>gi|253688457|ref|YP_003017647.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251755035|gb|ACT13111.1| type II and III secretion system protein [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 388

 Score = 87.5 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 50/238 (21%), Positives = 92/238 (38%), Gaps = 20/238 (8%)

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L++I   D+V +   + E++ +     G Q + +  +S  +            S+   + 
Sbjct: 167 LIDIRA-DEVVVSGYVYEIQTNSRDGSGLQLAASLLNSKLNFQIGG-------SDSRGYE 218

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
               +   S   ++   +  T   T++ PTL   SG +A F+ G        +S  G ++
Sbjct: 219 NFLKISSGSMNALVELFKTDTRFSTVSAPTLRVRSGANAVFSVGNSTPTLGSTSFQGQSA 278

Query: 307 VT---THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVRKADTTVEL 362
           +      D GV+   +P  +    I LRI+ E+S      N   D P+   R+  T + L
Sbjct: 279 IQSVVYRDAGVIFDVSP-AVRLDAIDLRIRQELSNFTSTQNGVNDSPTLIKREISTDISL 337

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
             G  I+L GL  D       G   L         F +   + ++T+I I      ++
Sbjct: 338 SDGDIILLGGLADDKKTASGTGFSWLPS-------FTSQGSSADKTDIVIVLQVRKIR 388


>gi|238796228|ref|ZP_04639738.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
           43969]
 gi|238719921|gb|EEQ11727.1| Type II secretory pathway, component PulD [Yersinia mollaretii ATCC
           43969]
          Length = 555

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 86/276 (31%), Gaps = 28/276 (10%)

Query: 169 SQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVTIAE--VRRDILKQIGFQHSITGSS 223
           + S       S   +V   +  A +    QV +KV +    V R+   Q           
Sbjct: 275 NTSITVTAPASVVDRVGRQIQEANKQLLRQVAIKVDVYSFNVDRNSNWQFDLTAKFKTGV 334

Query: 224 SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
           +       A         G   S          + VL+ LE+   +  +    +T +SGQ
Sbjct: 335 AQYGVGSTAMLSDGSNLVGSLTSSITGGRFDGSKAVLNMLEQNGDVSVVTTANVTTMSGQ 394

Query: 284 SASFTSGGQH-------LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
                            +    + +T     +    G  ++  P V+  G++ ++    +
Sbjct: 395 PVPVQVSNSRGYVSAVKVEMNDNKTTTTAESSMVTAGFSMNILPNVMDDGKVLMQYNMNI 454

Query: 337 SEPVIGVNAG------------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           S  V   N               +P+   R    +  + +G T+V+AG  +        G
Sbjct: 455 STLVGKDNGFETVIIDNNGTKMQLPNVDQRSFIQSGMVNNGSTLVMAGFEQVLNNSGDSG 514

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +   +LG    N +  +    + I  TP ++ 
Sbjct: 515 Q-GSANFKLLG---GNRKGQQSREILVICITPVVLD 546


>gi|240142427|ref|YP_002966937.1| putative type IVB pilus formation outer membrane protein
           [Methylobacterium extorquens AM1]
 gi|240012371|gb|ACS43596.1| putative type IVB pilus formation outer membrane protein
           [Methylobacterium extorquens AM1]
          Length = 601

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 85/301 (28%), Gaps = 50/301 (16%)

Query: 165 ETFLSQSGRNQYANSSSKKVMNL-------LNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
             F           +++  V+         +      QV L + +  V  +         
Sbjct: 294 GRFEISPATGTLTVTATPNVVQRVQEYADVMRKRMNGQVALSIQVLNVSLEDADSFDNNV 353

Query: 218 SITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF----------------SFETVLH 261
           +     S             F +     S  G L+                  + +  + 
Sbjct: 354 AALFLGSNKGAFALGRRSPGFNASDPRSSTIGNLNSATPSLGYAILDPTSPFANTQGAIS 413

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-----------SVTTH 310
           AL     +  +   +LT ++G         +  +    ++T  T              T 
Sbjct: 414 ALAERGNVSVVTSASLTTVNGSPVPLQVVNKRNFVKNVTNTQGTGLSTGVASTTIQTDTV 473

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSE----------PVIGVNAGDMPSYRVRKADTTV 360
             G  L   P ++  G + L+    +SE            +  +   +P+   R      
Sbjct: 474 STGFNLQMVPRIMQDGNVLLQYGMNISELVGREDGFDTFTVNGSTVQLPNVNQRNFVQQS 533

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE-IFIAATPFLV 419
            +P+  T+VLAG         ++G+      P    L    R ++   E + I  TP L+
Sbjct: 534 IVPNRSTLVLAGFETARSTSSQQGV---GD-PR-NWLLSGGRTSKNRREVVVILITPTLL 588

Query: 420 K 420
            
Sbjct: 589 D 589


>gi|224373205|ref|YP_002607577.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
 gi|223589165|gb|ACM92901.1| hypothetical protein NAMH_1181 [Nautilia profundicola AmH]
          Length = 396

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 43/210 (20%), Positives = 76/210 (36%), Gaps = 20/210 (9%)

Query: 205 VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
           +     K+IG   +I       +            S   +          +F   +  L 
Sbjct: 172 INNKKAKEIGTDLNIKSPFHSSALFDLVTDTAVVSSSITN----------NFSAFIKFLN 221

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLH 317
              A  T+++PT+  I   + +  S     Y T S +T         T +   D G+ ++
Sbjct: 222 SKGAAETISKPTILLIDSSNYTLESVHSIPYVTKSVTTDKDGNPVTQTDLKYKDVGLKIY 281

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT-IVLAGLLKD 376
                ++   I   +   V   V   N  D P    +  +T V+L    +  ++AGL   
Sbjct: 282 IKNVYITDRSIDFDMDIYVESIVSYDN--DKPITDTKHFNTHVQLTKKSSGYLIAGLRTV 339

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
                  G+P+L  IPILG LF+ ++ + E
Sbjct: 340 TKISEDSGVPVLKDIPILGILFQKNKKSVE 369


>gi|42520368|ref|NP_966283.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410106|gb|AAS14217.1| type II secretion system protein, putative [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 500

 Score = 87.1 bits (214), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/227 (15%), Positives = 76/227 (33%), Gaps = 34/227 (14%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +                    
Sbjct: 240 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 289

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             +    ++           ++  L++      ++ P + AI+ Q A  +    H+Y   
Sbjct: 290 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 349

Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNA---- 345
                   S+ T  T + +   GVVL   P++      I + I   +S            
Sbjct: 350 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDIE 409

Query: 346 -----------GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQL 381
                       D+P   +R+ ++ +++ SG  +V+ GL++    + 
Sbjct: 410 YVAQQSKMKLNSDIPIVEIREMNSMLKIKSGEIMVIGGLIEHREDKQ 456


>gi|322514180|ref|ZP_08067245.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
 gi|322119966|gb|EFX91968.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
          Length = 162

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 51/142 (35%), Gaps = 3/142 (2%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
           +       K  ++   +  +++    +  V VS P  AD  +    T  L+ K  G+A +
Sbjct: 20  AFSHTAVAKTFALEQGQSQLIKTDAKIDTVFVSSPDVADYEILDDNTFMLYTKAEGRAEI 79

Query: 100 ILIGHDGKQML---NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
           +    DG  +            +IA     ++    +SN+ ++ +    V+ G  +   +
Sbjct: 80  VAFDVDGTPLTEDFVNVNNAINNIAAANAQIQTRFPNSNLSIKKIGKAYVIEGKAKNAAE 139

Query: 157 SQRAVELSETFLSQSGRNQYAN 178
           S+    +    L    +   A 
Sbjct: 140 SEEINRIVGESLGAGRKVVEAK 161


>gi|254362930|ref|ZP_04978997.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
           PHL213]
 gi|153094576|gb|EDN75393.1| PulD family bacteriophage secretion protein [Mannheimia haemolytica
           PHL213]
          Length = 377

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 94/302 (31%), Gaps = 45/302 (14%)

Query: 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ 175
           I RD+ +L   L+        +V    D +V +G    I   +  ++  +T         
Sbjct: 113 IHRDVDYLASFLKD--GTEGNQVFASGDKLVYYGTSEDIARVKSILKSIDT--------- 161

Query: 176 YANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
                              +V +   + EV+              GS         +   
Sbjct: 162 ----------------KSREVVVTGYVFEVQ---------NIEKEGSGINLLAKLLSGKL 196

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL- 294
           G  V     +     ++  + + +          R ++ PTL   SG   +F+ G     
Sbjct: 197 GISVGYKQSYENFITVNAGNLDAMFELFRTDQRFRVVSSPTLRVKSGSRGNFSVGSDVPV 256

Query: 295 --YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
               T        S+     GV+    PT +    I L+IQ   +         + P+  
Sbjct: 257 LSNVTYQDGRPIQSIEYRSSGVIFDIQPT-IKDKAIDLKIQQLSNFIKTDTGVNNSPTLV 315

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R   T V + SG  IVL GL ++ I   +    LL K    G L         +T+I +
Sbjct: 316 KRDLVTDVTVKSGDVIVLGGLAENKISNGETSFSLLPK----GWL-SGKSNENTKTDIIV 370

Query: 413 AA 414
             
Sbjct: 371 LL 372


>gi|329905867|ref|ZP_08274251.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
 gi|327547462|gb|EGF32282.1| Lipoprotein [Oxalobacteraceae bacterium IMCC9480]
          Length = 243

 Score = 86.7 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 72/240 (30%), Gaps = 20/240 (8%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG--GKFVSEGGDFSVKGV 250
             QV + VT+  V        G Q      +       +          +          
Sbjct: 2   SRQVMVNVTVLAVTLTRGDNYGIQWDAVYQTLSRKYGLSNSLAKVANTNAFSAAILDTAT 61

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--- 307
                   ++ AL     +R     ++  ++ Q        Q  Y   S +T   +V   
Sbjct: 62  SKLAGSAMMIEALSEQGRVRRETSASVVTLNNQPVPVQVAKQTSYLKSSQTTQVPNVGST 121

Query: 308 -----TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKA 356
                 T   G  +   P VL+ G + L+  T++S             + + P    R  
Sbjct: 122 TTLTPGTITTGFNMSILPNVLNNGTVLLQFSTDISSLRSLRTVSSSTASIETPETETRNF 181

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V + S  T++++G  + D    ++G+      P    L  +      +  I I  TP
Sbjct: 182 LQRVAMKSNETLIISGFEQTDDNLTQQGV----GTPANLLLGGSLGAGSNKEIIVIMITP 237


>gi|254003197|ref|YP_003052663.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Methylovorus sp. SIP3-4]
 gi|253987280|gb|ACT52136.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Methylovorus sp. SIP3-4]
          Length = 559

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 50/287 (17%), Positives = 99/287 (34%), Gaps = 30/287 (10%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           + V  + T       N    +  ++ +   N+A   QV + V +  V        G   +
Sbjct: 275 KVVVTAATGTITVSDNPQVLAQVERYVQQQNMAMGRQVVVNVHVYSVSLSNSDSYGINWN 334

Query: 219 ITGSSSGPSKSFA-----------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
              +S   +  F             +   K ++  G  S   +      + +  AL +  
Sbjct: 335 AVYNSLSGNFGFTLSNAFAPETGSTNLALKILATAGSASNSELKAFAGSQVMFDALSKQG 394

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT---------HDYGVVLHF 318
            +  +   ++T ++ Q A    G Q  Y   SS+T  T  +           + G  ++ 
Sbjct: 395 RVSQITSSSITTLNNQPAPIQVGRQRTYLASSSTTIGTVGSPSVTTLQPGLINTGFSMNL 454

Query: 319 TPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
            P +L    + L+   ++S          G ++   P    R     V+L SG T+V+ G
Sbjct: 455 VPHILDSKELLLQYAVDLSSLIGITTVTSGTSSIQTPEIETRNFLQRVKLNSGDTLVVTG 514

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
             +   +   +GI   S + + G L  N   N     + +   P ++
Sbjct: 515 FEQTQDEANMQGIGDASNVSLGGGLTGNKGRNV----LVVLIQPVII 557


>gi|89885889|ref|YP_516087.1| Type II secretory pathway component PulD-like [Rhodoferax
           ferrireducens T118]
 gi|89347887|gb|ABD72089.1| Type II secretory pathway component PulD-like [Rhodoferax
           ferrireducens T118]
          Length = 475

 Score = 86.7 bits (213), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 63/463 (13%), Positives = 141/463 (30%), Gaps = 70/463 (15%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEA-NAAVINISDVEI-GKGKKISIGLNKVIILQVPVDVQD 68
           +    L +S+  +A    + EA      N+          +IS+ +++       +  ++
Sbjct: 5   LTVALLVASSAFMAGCAQLPEATGDTTGNVGASGPIAPAPEISV-VDRSPDRTRNIGKEE 63

Query: 69  VLVSDP----------TKADVVVHSPR-----TMYLFGKNVGQANVILIGHDGKQMLNLD 113
           + ++ P             +V + S R        L GKN+   +  + G + K M    
Sbjct: 64  LFIAQPLQSSDPMPRINIENVTILSSRVYELMRTLLDGKNI---SFSISGVNSKVMRR-H 119

Query: 114 ILIERDIAHLEMTLRRFIADSNIRVEMVSDTV----------------VLHGMVRTIQDS 157
           +        LE  L  F             T+                 ++  +  +  S
Sbjct: 120 VSASNITGDLEQILDDFANSVGFYWHYKGGTLHIAPDRQYIATIPPIDDVYESMPPMLQS 179

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDILKQIGF 215
             A+++     S          +S+K+   L    +++  +   V + +V  D   + G 
Sbjct: 180 MGAIDVFVDRTSHLVTYSANREASEKIDGYLKHIRDNKKMISYDVYVWQVELDGDHKNGI 239

Query: 216 QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
           +           +             G  FS          + +   L     I  +++P
Sbjct: 240 RWEKLDEEIASKRGVKRQAASSDAKLGAGFSSTFGRGELPIDVLSSFLSAQGKIHAISQP 299

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFT-----PTVL 323
            +  ISG  ++F  G   +Y     +  ++ V            G+ L         TV 
Sbjct: 300 KMAMISGGKSTFRIGNTTVYAKQVGTDSSSGVNKTTVTTAQALSGIELTVVGNLDGETVY 359

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
           +  ++ L      +       +  +P    R+  T   +  G +++LAG+        + 
Sbjct: 360 TDIQMKLNDLLRFNSFSANGISLQLPQNANRELSTLARIRPGNSLLLAGINISRTDDSRT 419

Query: 384 GIPLLSK--------IPILGALFRNSRFNREETEIFIAATPFL 418
               +          +P       +     + TE+ +  +P +
Sbjct: 420 ----VKDAREKNSMTLP------NSMYETEQRTELVLVFSPNV 452


>gi|299140102|ref|ZP_07033271.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
 gi|298597948|gb|EFI54117.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX8]
          Length = 654

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 89/253 (35%), Gaps = 42/253 (16%)

Query: 222 SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           S +  +  F    G      G   +   +    +    L+A    +  RTL +  + A  
Sbjct: 409 SGTVNASQFTNLLGVLGHFSGLPLAGVFLGSNTNLNLSLNA----SDARTLDDIQVRAND 464

Query: 282 GQSASFTSGGQHLYKTVSSSTG---------------------------------ATSVT 308
            Q  +F +G ++   T + S+G                                    + 
Sbjct: 465 NQPVNFRAGTRYPITTSTYSSGGSNSLPSSLAGVNVGGTNLNTLLQQYLGTSTVTIPQIQ 524

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             D G+ +  TP +L  G + L ++ ++ E +   +   +P    R   +T+ +P+G   
Sbjct: 525 YEDLGITVKTTPRILRSGDVRLTLELKI-EALGTGSNDGIPILTNRSLTSTITVPAGKEA 583

Query: 369 VLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP--VAMRD 426
           +LA  +  D  +   GIP L++IP       N     +  E+ I  TP +V+   + +  
Sbjct: 584 LLASEISRDESRSMSGIPGLNEIPGFQG--TNEDKEVDTDELLITITPHIVRAGDMRIAS 641

Query: 427 LSRPDDHYSVEDD 439
                +H +    
Sbjct: 642 KRLAVEHTAKPSQ 654


>gi|90411855|ref|ZP_01219863.1| putative type II protein secretion system D protein [Photobacterium
           profundum 3TCK]
 gi|90327113|gb|EAS43485.1| putative type II protein secretion system D protein [Photobacterium
           profundum 3TCK]
          Length = 438

 Score = 85.6 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 75/233 (32%), Gaps = 33/233 (14%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
            E++       GF        +    S   + G    S      +      F+F  V++A
Sbjct: 216 VEIKESDGN--GFDWKTLNILANLDGSEMLNNGFSLTSGN---RLGITGKNFNFSLVMNA 270

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYK-------TVSSSTGATSVTTHDYGVV 315
           L        +   ++  +SG+ A   +  +  Y            +    + +  + G+ 
Sbjct: 271 LNEYGQTEAIQNTSIKTLSGKEAVLKTTERTPYIDKIEIMNNGEFTEKGFTTSETETGLE 330

Query: 316 LHFTPTVLSPGRI----------GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSG 365
           L   P      ++           L+    VS     +N    P+   ++ ++ V + +G
Sbjct: 331 LKILPYFDKDSKMLNIKVDLKNSSLKGFLNVSNDDFELN---QPNTEEQEFNSVVRIRAG 387

Query: 366 GTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            T V+ GL+     +    I           + ++++    +  +FI   P +
Sbjct: 388 ETSVIGGLIYYKQNKSGNNI--------FNEITQSNKKEFSKNALFILIRPTV 432


>gi|59714382|ref|YP_207156.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
 gi|59482659|gb|AAW88268.1| hypothetical protein VF_B0026 [Vibrio fischeri ES114]
          Length = 479

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 98/323 (30%), Gaps = 39/323 (12%)

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETF 167
           Q LN++    + +  +  +L + +   +I  + +S +  L   V       +  ++    
Sbjct: 180 QYLNVEYKDVQIVDEIAASLEKVLGGDDIAKKSISVSPALS-SVTVTATIDQMQDI---- 234

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI-TGSSSGP 226
                         + V++        QV L + + E R ++  +     +I   + +G 
Sbjct: 235 --------------EYVIDHYKKELSKQVILDIQMIEFRSNLGTEHSIDWNIVKDTGNGL 280

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
            + F           G   +  G       E+ +  LE+  ++ T    T   ++ Q A 
Sbjct: 281 LQFFVPGTTTISQGAGYGLAFTGKGKWTGTESFIRVLEQQGSVSTQTPITAMILNNQPAK 340

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIG------------LRIQT 334
            T      Y   +SS  +  V +             +    I             L+   
Sbjct: 341 ITQQNVIPYIYEASSESSEGVISASVTRKTEVEGVDMMVNSIIQDEYVSLRISGQLQKIF 400

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPIL 394
             S   +G     M S +  +     +L  G T V+A + +      +            
Sbjct: 401 NRSTEKVGDVNLGMLSTQKSEITFANKLRYGQTFVIASVKQTSKTAEQTKSFWT------ 454

Query: 395 GALFRNSRFNREETEIFIAATPF 417
             LF  +    +  E  +  TP 
Sbjct: 455 -ELFGGTGTRNDTVETLVLLTPR 476


>gi|269105263|ref|ZP_06157955.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268160527|gb|EEZ39028.1| hypothetical protein VDA_000083 [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 486

 Score = 85.6 bits (210), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 83/290 (28%), Gaps = 26/290 (8%)

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIA 203
            VVL       +       +               +  ++V++        QV L++T+ 
Sbjct: 204 KVVLKSDSEDNKLIGDVQSVPSMGSITVRTTPSRMAQVRQVVDKFQQELAKQVLLEITVL 263

Query: 204 EVRRDILKQIGFQHS-ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
           E R ++ K  G     +     G  K                 +  G          + A
Sbjct: 264 EFRSNLGKDQGIDWQLLKNVGDGTIKFLIPGTTATATGNPAGLAFTGTGKWDGTTAFIKA 323

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVV 315
           LE    + T    ++  ISG  A  +      Y +  S+    + T+          GV 
Sbjct: 324 LEEQGTVSTQTPISMLTISGYPARISQTITTPYLSDVSTEVTETTTSTSTTRDKVVEGVD 383

Query: 316 LHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVL 370
           +     V       R+  ++     +    +N   +   + R AD +    L  G T+V+
Sbjct: 384 MMVNAKVQKGVVSLRVTGKLTKIAGDTTEKINDATLRFIKTRDADLSFVNKLRYGQTVVI 443

Query: 371 AGLLKDDIQQLKE---GIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             + +      K    GI  L                 E  E  +  TP 
Sbjct: 444 GSIKQQSTGANKSSSFGIDGLG----------MQSTTNETVETLVLLTPR 483


>gi|330883499|gb|EGH17648.1| general secretion pathway protein D [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 98

 Score = 85.2 bits (209), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 2/75 (2%)

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
             SG T++L GL+K D  +    +P L +IP L  LF N+  ++  TE+ +  TP ++  
Sbjct: 10  AKSGQTVLLGGLIKQDNAETVNAVPYLGRIPGLRWLFGNTSKSKGRTELIVLITPRVI-- 67

Query: 422 VAMRDLSRPDDHYSV 436
            +     +  D Y  
Sbjct: 68  TSSSQARQVTDDYRQ 82


>gi|310765409|gb|ADP10359.1| hypothetical protein EJP617_06780 [Erwinia sp. Ejp617]
          Length = 559

 Score = 84.4 bits (207), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 79/251 (31%), Gaps = 27/251 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I  V +   +Q+G    +   S     +          S      +  +  
Sbjct: 313 SRQVQLNIQIVSVSQSRNEQLGLDWGLIYRSLNNYGASLTGSMASASSSAASAGISILDT 372

Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                        ++ AL     +      T    +    ++    Q    + SSST   
Sbjct: 373 ATGNAAKFSGSSMLIKALSEQGNVSMALNQTDPTANLIPVAYQLSNQKGILSSSSSTATA 432

Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMP 349
           +V        TT   G+ +   P +   G + L+     + P          G    D+P
Sbjct: 433 NVGVTSTMTTTTITTGLFMTMLPFIQENGDVQLQFAFSYTSPPQIEKFISADGNTRNDLP 492

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +         V L SG T+VL G  + ++   K+G        I+G         R  T 
Sbjct: 493 TTSTEGLTRKVNLRSGQTLVLTGSEQQNVSTDKQGTFTPGNF-IMG---GGQAGTRGRTT 548

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 549 LVIMITPVLLR 559


>gi|332283584|ref|YP_004415495.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
           T7-7]
 gi|330427537|gb|AEC18871.1| PilN family type IV pilus biogenesis protein [Pusillimonas sp.
           T7-7]
          Length = 575

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/259 (15%), Positives = 78/259 (30%), Gaps = 29/259 (11%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
           + ++ +N     Q  L VT+A V       +G   ++   S+  +           +   
Sbjct: 313 QYIDKINERMSRQAMLYVTVASVTLTDSDSLGINWNLVWQSASGNYGAGLMNALSPLEGA 372

Query: 243 GDFSVKGVLDRF-------SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
                  +             + +L AL +  A+  + +  +T    Q        +  Y
Sbjct: 373 SSVGFGILDTATGRAGQFAGTQAILSALSKQGAVSIMRQRGVTTQHLQPTPIHLTNEEQY 432

Query: 296 KTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGD 347
               S T    V         +   G  +   P +     + L+    +S P +      
Sbjct: 433 VCGRSQTNTAQVGSTESIQMCSVVTGFAMDILPDIHGQN-LTLQFSLNMSPPAVIQQVPG 491

Query: 348 MP-------SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILGALFR 399
            P       S   +     V + SG T+V++   +      K+GI   S  IP  G    
Sbjct: 492 DPDKPVFIASVDRQVFLQRVGMRSGQTLVISDFQEASETSTKQGIGGTSTWIPTGGG--- 548

Query: 400 NSRFNREETEIFIAATPFL 418
                +    + I  +P +
Sbjct: 549 --VREKARKVLVIIISPRI 565


>gi|37523454|ref|NP_926831.1| hypothetical protein gll3885 [Gloeobacter violaceus PCC 7421]
 gi|35214458|dbj|BAC91826.1| gll3885 [Gloeobacter violaceus PCC 7421]
          Length = 299

 Score = 84.4 bits (207), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 50/235 (21%), Positives = 94/235 (40%), Gaps = 25/235 (10%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV--------- 259
               +G   ++ GS+       AA  G    +  G+  V       +             
Sbjct: 43  FGLDLGNGGALGGSTFPQYSGLAAGAGALSTAPLGNNGVLPNRSALTLTFANIVLQLQLL 102

Query: 260 --LHALERATAIRTLAEPTLTAISGQSASFTSGGQH--LYKTVSSSTGATSVTTHDYGVV 315
             ++AL+       L +  L    G++A+ +   Q       VS+ T  +S    +    
Sbjct: 103 QQVNALQT------LIDQQLVVSDGETATISQNVQFRIPQTIVSNGTALSSTQAINARTT 156

Query: 316 LHFTPTVL-SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD-TTVELPSGGTIVLAGL 373
           L+ TP VL S  ++ + ++ + S+P                 D   + L SGG  +L G+
Sbjct: 157 LNLTPMVLPSKKQVAISVRGDFSDPQGSGEGL---VINTNSIDIPNLRLDSGGVALLGGI 213

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV-KPVAMRDL 427
            + D   ++  +P+LS IPILG LF++S    ++  + +   P +  +P+A  +L
Sbjct: 214 TRHDEANIEYRVPVLSAIPILGDLFKSSNRVVKDQRLLVMIEPVIQEQPLAGAEL 268


>gi|189424031|ref|YP_001951208.1| type II secretory pathway component PulD-like protein [Geobacter
           lovleyi SZ]
 gi|189420290|gb|ACD94688.1| Type II secretory pathway component PulD-like protein [Geobacter
           lovleyi SZ]
          Length = 510

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 38/275 (13%), Positives = 80/275 (29%), Gaps = 57/275 (20%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------------------- 234
           VT+++ +  VR +    +G   S               F                     
Sbjct: 236 VTMRIVLMNVRLNNGNSLGIDWSQMAVGWQSQNIQNLGFKKLAKLDDSSSSTGTTTGTTT 295

Query: 235 -----------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
                      G   +      ++     RFS   +   +E       +    +  +SG+
Sbjct: 296 TTTPATNLFEQGIGALFNTSGANLFMESSRFSLSALFSFMENFGKYNVMQNVFVETMSGK 355

Query: 284 SASFTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGR---IGL 330
                   +  Y +             +      +T   GV++ FTP      +   I L
Sbjct: 356 KGKIEIVTESPYVSEIGISSLSSTSGATAATAKTSTAKAGVIMDFTPYYNKKQQMLTINL 415

Query: 331 RIQTEVSEPVIGVNAGD------MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
           ++  E     + ++AG        P    +  +T + +      ++ GL+ +       G
Sbjct: 416 KVNVEGVNRYVTISAGSQLGSFMQPETTKKSVETFLRMKPEQVAIIGGLVYEMNDDNVNG 475

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +P          L +N    +E+ E+ I   P ++
Sbjct: 476 LP--GDT----YLTKNVTGKKEKEELVIVVKPTII 504


>gi|283779820|ref|YP_003370575.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
 gi|283438273|gb|ADB16715.1| type II and III secretion system protein [Pirellula staleyi DSM 6068]
          Length = 1305

 Score = 84.0 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 49/256 (19%), Positives = 84/256 (32%), Gaps = 52/256 (20%)

Query: 208  DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
                 +GF+    GS+      F A     F           +L       +L+A +   
Sbjct: 1043 SADLDLGFRQGSFGSAVPQFGGFDAGTAASFG--------FAILSDIEVFFLLNAAQGDD 1094

Query: 268  AIRTLAEPTLTAISGQSASFTSGGQHLYK----------------------TVSSSTGAT 305
                L  P +T  +GQ A  +   Q  +                         +S +   
Sbjct: 1095 RTNILQAPKVTLFNGQQAFVSDTSQRPFVISVIPVVGDFAAAQQPVIAVLNEGTSLSVQG 1154

Query: 306  SVTTHDYGVVLHFTPTVLSPGRIGLRIQT--------EVSEPVIGVNAGDMPSYRVRKAD 357
             V+     V L   P   + G +     T         V +     +     + R     
Sbjct: 1155 VVSPDRRFVRLTMVPFFSTIGDVDTFTFTGSTTTDSGSVIQDPSNPDENATDNVRTTTEG 1214

Query: 358  TTVE--------------LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
            TTV+              +P GGT++L G+ +    + + G+PLLSK+P +  LF+N   
Sbjct: 1215 TTVQLPTFAFTTVTTTVSVPDGGTVLLGGIKRLREGRNERGVPLLSKVPYVSRLFKNVGI 1274

Query: 404  NREETEIFIAATPFLV 419
             RE   + +  TP ++
Sbjct: 1275 GREAQSLMMMVTPRII 1290


>gi|120536911|ref|YP_956969.1| Type II secretory pathway component PulD-like [Marinobacter
           aquaeolei VT8]
 gi|120326745|gb|ABM21054.1| Type II secretory pathway component PulD-like [Marinobacter
           aquaeolei VT8]
          Length = 547

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 78/239 (32%), Gaps = 18/239 (7%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L++  A V  +         +   ++        +    +  ++        +   
Sbjct: 308 RQVYLQIRTAAVSVESANDFNVTWNNILNTVNSGAFELSSQTAEVPTQNLPNVFNVIRTS 367

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT-------- 305
                 L  L        + E  +T +S Q  S     +  Y +  S   AT        
Sbjct: 368 NGASLALELLASELESTEVNEQAVTTLSNQPTSLKVLTETGYISGISQQDATVNADNLVS 427

Query: 306 --SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN-AGDMPSYRVRKADTTVE- 361
                T + G      P V+S  R+ L++  E+S  +  VN    +     R  ++ V+ 
Sbjct: 428 DVQTDTVNIGFDATLLPRVISESRLQLQVALELSSNLTLVNFDSTIVQTPTRDRNSVVQR 487

Query: 362 --LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
             L +G T VLA          ++G       P    L   +  ++EE  + +  TP +
Sbjct: 488 AWLRNGETWVLAAFNSSKSSNQEQGT---GD-PGFWGLGGGTSKSKEEQILLVMITPHI 542


>gi|297520545|ref|ZP_06938931.1| general secretion pathway protein D precursor [Escherichia coli
           OP50]
          Length = 111

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 30/57 (52%)

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
           L GL+ D   +    +PLL  IP++G LF+++   +E+  + +   P +++     D
Sbjct: 1   LGGLMDDQAGESVAKVPLLGDIPLIGNLFKSTADKKEKRNLMVFIRPTILRDGMAAD 57


>gi|319428145|gb|ADV56219.1| type II and III secretion system protein [Shewanella putrefaciens
           200]
          Length = 492

 Score = 83.6 bits (205), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/338 (10%), Positives = 107/338 (31%), Gaps = 51/338 (15%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L   D  Q  N+   +  +I      +   + + N+  ++  +  +  G + T+    R 
Sbjct: 188 LFNADQDQFANIKATVSSEIEDAVKVIESMMGEKNVNGQVHPN--IASGTL-TVTTKPRI 244

Query: 161 VELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT 220
           +   E ++ Q                         V + V I   + ++    G   ++ 
Sbjct: 245 MRDVENYVKQLNAMFG-----------------QMVRIDVQIITFQSNLDNSFGVDWNMV 287

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             ++  + +F     G+        + K          +++AL+    +  +  P++ AI
Sbjct: 288 RETTKGTLNFTIPSSGETSGLTFASTDKLFNGS---TALVNALKTQGNVSLVTTPSMLAI 344

Query: 281 SGQSASFT------SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT---VLSPGRIGLR 331
           + +                  +  ++   +T    +   V   F+      +    + ++
Sbjct: 345 NNRVGEIESLRKEAYVKDITMREATNEDSSTYSEVNQGVVSEGFSMRALVKIDGDEVLMQ 404

Query: 332 IQTEVSEPVIGVN------AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE-- 383
           +   +S                 P+    + +  +++ +G T++L+G  +  +   +   
Sbjct: 405 MSATISRLGNFGTVEMPTITLKTPNMSEDRFNQPLKIQNGRTVILSGYTQSAVTSEQSES 464

Query: 384 -GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
              PLL            +     ++   +  TP +++
Sbjct: 465 FRNPLLG----------GNSGKERKSHTLVLVTPRIIR 492


>gi|255022020|ref|ZP_05294026.1| PilN [Acidithiobacillus caldus ATCC 51756]
 gi|254968506|gb|EET26062.1| PilN [Acidithiobacillus caldus ATCC 51756]
          Length = 544

 Score = 83.6 bits (205), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 94/301 (31%), Gaps = 35/301 (11%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L  + +T+    + V  + T               +  +  L    + QV + V +  V 
Sbjct: 251 LSKVAQTVAGGGQVVVDASTGTVTVTGTPPEVRRVRDWVQGLARQLQRQVAITVHVYNVN 310

Query: 207 RDILKQIGFQHSITGSSSG------------PSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
            +  +  G   S    S G            PS S          +     +   +    
Sbjct: 311 LNNEQNYGLNLSGAFQSLGRQYGVTLQGVAPPSVSSGGPAPLSLGANILSSATGALGQWQ 370

Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT----- 309
                + AL     +  +   +  +++G+        Q  Y   SS+T   +V T     
Sbjct: 371 GSSIAVQALATLGHVTQVFSRSAISLNGEPTPIQVAQQTGYLAESSNTTTANVGTTSGLI 430

Query: 310 ---HDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTV 360
                 G    F P ++  GRI L +   +S          G ++  +P+        +V
Sbjct: 431 PGTVTTGFTAMFLPKIV-DGRILLGMNMTISNLVGIQTISSGGSSIQVPTVDSSTFQQSV 489

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +L  G T++L G  +        G+  P     P+LG     +  +     I I  T  +
Sbjct: 490 KLKPGQTLLLTGYSQSQGSTTHNGVGSPYF---PLLG---GGADASLSRQMIAIVITARI 543

Query: 419 V 419
           +
Sbjct: 544 L 544


>gi|54303276|ref|YP_133269.1| hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
 gi|46916706|emb|CAG23469.1| Hypothetical protein PBPRB1609 [Photobacterium profundum SS9]
          Length = 488

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 57/386 (14%), Positives = 101/386 (26%), Gaps = 56/386 (14%)

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            D+       + +     G           K+++    L +  I  L          S  
Sbjct: 117 VDLHTTRQNILNVLSSQTG----YAFTPSEKKIVVQRYLSKTFIIQLPTGAYSAQQGSQG 172

Query: 137 RVEMVSDTVVLHGMVRTIQDSQR-----AVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
           + +   D   + G   ++    +       E  +  L     +       + V ++  I 
Sbjct: 173 QSKGKDDEAKVEGQFISVTYKDKDVFTEISEAVKVVLKSDDEDGELIGDVQPVPSMSGIT 232

Query: 192 GE---------------------DQVTLKVTIAEVRRDILKQIGFQHSITGS-SSGPSKS 229
                                   QV + + I E R ++ K  G    I      G  K 
Sbjct: 233 VRTTPVRMRQVQALIDSYQSELNKQVLIDIRILEFRSNLGKDRGVDWQILKEVGDGTLKF 292

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
                           +  G          + ALE+   + T    +   +S Q A  + 
Sbjct: 293 LIPGTTTSSAGNPAGLAFTGTGKWDGTTAFIKALEQQGTVSTETPISFRTLSSQPARISQ 352

Query: 290 GGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RIGLRIQTEVSEP 339
                +    S+    + TT          GV +  +  V       R   ++    S+ 
Sbjct: 353 TLVTPFLEDFSTVITDNTTTPTTTRGSVTEGVDMTISANVQKGFVWLRTAGKLTKIASDT 412

Query: 340 VIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQQLKE---GIPLLSKIPIL 394
              V    +     R AD      L  G T+V+  + +      K    GI  L      
Sbjct: 413 TEKVADVALRFISTRSADLNFTNKLRYGQTVVIGSIKQQTTGANKSTSFGIDGLG----- 467

Query: 395 GALFRNSRFNREETEIFIAATPFLVK 420
                    N +  E  I  TP  V+
Sbjct: 468 -----MQSTNNQTVETLILLTPRRVQ 488


>gi|294784349|ref|ZP_06749640.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
 gi|294487921|gb|EFG35276.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
          Length = 127

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 12/101 (11%)

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRV------------RKADTTVELPSGGTIVLA 371
               I L I  E+S+     N  ++                 R   T V + +G TI+L 
Sbjct: 19  DNDYIILEISLELSDFKFKKNVLNLKDINSGTYNSEGGSKVGRGLTTKVRVKNGDTILLG 78

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           GL K   Q ++  IP+L  IPI+   F+N+    E ++++I
Sbjct: 79  GLKKSIQQNIESKIPILGDIPIISFFFKNTTKKNENSDMYI 119


>gi|87311027|ref|ZP_01093152.1| RhcC2 [Blastopirellula marina DSM 3645]
 gi|87286317|gb|EAQ78226.1| RhcC2 [Blastopirellula marina DSM 3645]
          Length = 300

 Score = 83.3 bits (204), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 62/239 (25%), Positives = 103/239 (43%), Gaps = 18/239 (7%)

Query: 149 GMVRTIQDS---QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIA 203
           G     Q +     A E +     Q  R   +  +  + ++ L        QV + V + 
Sbjct: 18  GTAPAKQVAPVPAAAEEETLQAEKQLQRLIASRDALTQEIDRLRKRTGQHSQVFVSVQVF 77

Query: 204 EVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           E+      Q         +    + +         V  G     + + D  + + V+  L
Sbjct: 78  ELTHRKTPQ--------ANGFAAALAAGGLAEPGPVETGSATVYRVIADDEALKQVVAKL 129

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
           E++ A++ LAEPTL  +SGQ ASF  GG+   + V S+ G+ ++    YG  +H  P VL
Sbjct: 130 EKSGALKVLAEPTLMTVSGQPASFHVGGEFPIQ-VPSADGSPAIEFKAYGAEMHVVPVVL 188

Query: 324 SPGRIGLRIQTEVSEPVIG----VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
             GRI L ++  +SE        +    +P+ RVR  DT+VE+  G   VLAGL++  +
Sbjct: 189 GQGRIRLGLRPRISELDPDHGIKLGDLTVPALRVRGVDTSVEMHVGDAFVLAGLVQQRV 247


>gi|157164174|ref|YP_001467421.1| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
 gi|157164249|ref|YP_001467411.1| ABC transporter ATP-binding protein YojI [Campylobacter concisus
           13826]
 gi|157101403|gb|EAT97210.2| hypothetical protein CCC13826_0019 [Campylobacter concisus 13826]
 gi|157101412|gb|EAT97201.2| hypothetical protein CCC13826_1100 [Campylobacter concisus 13826]
          Length = 389

 Score = 83.3 bits (204), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 81/272 (29%), Gaps = 23/272 (8%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            L  TI       LK+IG +     +                 S          +++ S 
Sbjct: 134 QLSFTIISTDNTKLKEIGPRIESLLNPLDHFYFKIITNVLTVDST--------KVNKDSV 185

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTH 310
            ++++ L+       +  P +T I  + +   S  +   +  S       S     V   
Sbjct: 186 TSLINLLKEKGVSDLIYNPRVTVIDNKDSVIESVIKTPIQKSSIDIQNSQSITTNQVEYQ 245

Query: 311 DYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVL 370
           D G+ L+ +  +++   +   +   +   +        P    R   T V L    + ++
Sbjct: 246 DVGLKLYISSVLITNDSVSFTLDLYIENLLDDTLT---PRISSRHLKTNVYLTDTNSFLI 302

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRP 430
            G+   +  +  + IP +  IPILG +         +    I  T      +   +    
Sbjct: 303 GGINSKETIKSTKTIPFIENIPILGDITTYKSEKTSDYSFSIFIT------MLPSEKDIF 356

Query: 431 DDHYSVEDDAKAFFFNRVNKIYGPKEASEVEG 462
            + Y    D        +       + +   G
Sbjct: 357 SEFYYDPADKHLALERYLTSASRNAKGAPRSG 388


>gi|207722770|ref|YP_002253205.1| type iv pilus biosynthesis protein [Ralstonia solanacearum MolK2]
 gi|206587952|emb|CAQ18533.1| putative type iv pilus biosynthesis protein [Ralstonia solanacearum
           MolK2]
          Length = 563

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 54/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           A  +++  L               +  +  L+     QV + V I EVR +     G   
Sbjct: 284 AEVIADPNLGSVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343

Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
           S+   S       +F         S     SV   +     +     + AL     +  +
Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403

Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
              +    +G     QSA+   +    Q    +   ST +        G    FTP V+ 
Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462

Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374
            GRI +     +S           +   +   ++R         TV L  G ++VL GL 
Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522

Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                    G+  P    IP+ G         + ET I +  T  L+
Sbjct: 523 DQTTSTTNNGVGSPY---IPVAG---GGVDAAKRETMIAVVITARLL 563


>gi|315929956|gb|EFV09111.1| general secretory pathway protein D domain protein [Campylobacter
           jejuni subsp. jejuni 305]
          Length = 355

 Score = 82.9 bits (203), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 10/164 (6%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA 231
                   S K  +  L    + QV + V+I  V  +     G              +  
Sbjct: 193 TGTNSQLKSVKNYLQKLENRLKKQVIIDVSILAVSLNESHSSGINWQNFNIGLNSQVNNE 252

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291
             F  +F +  G     G+    +F+++++ L +      L+ P L A++ Q A  + G 
Sbjct: 253 NSFI-QFQNGQGFVKNLGLRANLNFDSIINFLSQNGKTSVLSNPKLMALNNQQAIISVGD 311

Query: 292 QHLYKTVSSSTGATSVTTH---------DYGVVLHFTPTVLSPG 326
              Y+   SS G  + TT            G++L+  P +   G
Sbjct: 312 TINYQVKESSKGTENGTTVSESYNNYSIFVGILLNILPEISDDG 355


>gi|160873109|ref|YP_001557114.1| hypothetical protein Sbal195_4700 [Shewanella baltica OS195]
 gi|160858631|gb|ABX51854.1| conserved hypothetical protein [Shewanella baltica OS195]
          Length = 492

 Score = 82.5 bits (202), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 76/277 (27%), Gaps = 28/277 (10%)

Query: 160 AVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
              +                + + ++N +      QV L + I E R +  K+     +I
Sbjct: 228 VEAIKSLTAIAVRTTPDRMVNVRNLVNSVQEQFGQQVVLDIRILEFRSNRGKERSLDWNI 287

Query: 220 TGSSSGPSKSF-AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                  S  F                + +G          + ALE+   + T    T  
Sbjct: 288 IKDVGNGSLEFMIPGTTTVSQGASYGMAFRGTGKWDGTAAFIRALEQQGTVSTETPITAL 347

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY-------GVVLHFTPTVLSPG---RI 328
            +S + A         Y     S     V T          GV +  TP V+       I
Sbjct: 348 GLSNRPARIAQTMTTPYIDEIKSESNDKVITASVTRASQSEGVDMMITPKVMDDAVWLSI 407

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE--LPSGGTIVLAGLLKDDIQ---QLKE 383
             ++   V +    V+   +     R+++      L  G T+V+  + +           
Sbjct: 408 AGKLTKIVGKRNETVHDVQLLFLDTRESEINFTNKLLYGQTVVIGSIKQTSTTAESNSNF 467

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G+P                      E  +  TP  V+
Sbjct: 468 GVP------------SGEGTLSNTVETLVLLTPRKVQ 492


>gi|330890299|gb|EGH22960.1| general secretion pathway protein D [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 123

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 365 GGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
           G  +VL GLL+D   Q  E +P LS+IP+LG LFRN   +  +T + +   P++++
Sbjct: 1   GQIMVLGGLLQDGYNQSDEAVPWLSRIPLLGVLFRNEARSTRKTNLMVFLRPYIIR 56


>gi|327413080|emb|CAX68109.1| putative pilus assembly protein [Salmonella enterica subsp.
           enterica]
          Length = 562

 Score = 82.1 bits (201), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/249 (16%), Positives = 78/249 (31%), Gaps = 29/249 (11%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGS---SSGPSKSFAADFGGKFVSEGGDFSVKGV 250
            Q+ L V I  V +   +++G    +  S   + G S   + +      + G    +   
Sbjct: 317 RQIQLDVKIMSVTQTRNEELGLDWDLVYSSLRNYGVSVKGSFNNASSGAASGAYSILDTA 376

Query: 251 LDR----FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                       ++ AL     +  +   +    +     +    Q      SSST   +
Sbjct: 377 TGSARHFAGSNLIMKALSEQGDVSVVTSQSRATTNLTPVPYQLSNQQGILVSSSSTPTAN 436

Query: 307 V--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEP--------VIGVNAGDMPS 350
           V        +    G+ +   P +   G + L+       P          G    D P+
Sbjct: 437 VGVTSTMSTSMLTTGLFMTAVPYIEENGNVQLQFAFSYDSPPKIESFFSADGNTRNDTPN 496

Query: 351 YRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF-RNSRFNREETE 409
           Y        V + +G T++L G  +  +   ++G    +       LF    +   + T 
Sbjct: 497 YSREAFTQKVNMKAGQTLMLTGSDQLSVSADRQGT-GSAD----NFLFGGGRKGTNKRTT 551

Query: 410 IFIAATPFL 418
           + I  TP L
Sbjct: 552 LIILITPIL 560


>gi|213418601|ref|ZP_03351667.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 138

 Score = 81.7 bits (200), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 24/124 (19%), Positives = 47/124 (37%), Gaps = 4/124 (3%)

Query: 300 SSTGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVN-AGDMPSYRVRK 355
                  + +   G +L  TP +L+     +I L +  +  +     +    +P  +  +
Sbjct: 8   QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIMLNLNIQDGQQSDTQSETDPLPEVQNSE 67

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             +   L +G +++L G  +      +  IPLL  IP++G LFRN               
Sbjct: 68  IASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQVHSVIRLFLIK 127

Query: 416 PFLV 419
             +V
Sbjct: 128 ASVV 131


>gi|297519324|ref|ZP_06937710.1| general secretion pathway protein D precursor [Escherichia coli
           OP50]
          Length = 136

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 30/138 (21%), Positives = 57/138 (41%), Gaps = 7/138 (5%)

Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHL-----YKT 297
           G       + +  +  ++ A++  ++   L+ P++T +  Q A F  G            
Sbjct: 1   GFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMVGQDVPVLTGSTVG 60

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
            ++S    +V     G++L  TP +     + + I+ EVS+     +   +  +  RK  
Sbjct: 61  SNNSNPFNTVERKKVGIMLKVTPQINEGNAVQMVIEQEVSKVEGQTSLDVV--FGERKLK 118

Query: 358 TTVELPSGGTIVLAGLLK 375
           TTV    G  IVL GL+ 
Sbjct: 119 TTVLANDGELIVLGGLMD 136


>gi|187930905|ref|YP_001901391.1| PilN [Ralstonia pickettii 12J]
 gi|187728949|gb|ACD30112.1| PilN [Ralstonia pickettii 12J]
          Length = 561

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%)

Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             A  +++  L               ++ +  L+     Q+ + V I EVR       G 
Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339

Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
             S+   S       +F         S     +    +     +     L AL     + 
Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399

Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            + +      +G     Q A+      G Q    +   ST A   +T+  G   +F P V
Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459

Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +  GRI +     +SE               +   + +  + + + +V L  G T+VL G
Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518

Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +        GI  P    +P+LG         +++T I +  T  L+
Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561


>gi|241258202|ref|YP_002978468.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|309783222|ref|ZP_07677935.1| R64 PilN family type IVB pilus formation outer membrane protein
           [Ralstonia sp. 5_7_47FAA]
 gi|240869002|gb|ACS66659.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|308917966|gb|EFP63650.1| R64 PilN family type IVB pilus formation outer membrane protein
           [Ralstonia sp. 5_7_47FAA]
          Length = 561

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 52/289 (17%), Positives = 95/289 (32%), Gaps = 34/289 (11%)

Query: 158 QRAVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGF 215
             A  +++  L               ++ +  L+     Q+ + V I EVR       G 
Sbjct: 280 ADATVVADKHLGSVTVTATPPQCDRLEEWVKGLDAMFGKQIGIDVKIYEVRLSQEDNYGL 339

Query: 216 QHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIR 270
             S+   S       +F         S     +    +     +     L AL     + 
Sbjct: 340 NLSLAYKSGNGHTGATFTGAGVPSVTSTASPMTFGATIVGGKLDGTKAALQALSTLGNVS 399

Query: 271 TLAEPTLTAISG-----QSASFT---SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTV 322
            + +      +G     Q A+      G Q    +   ST A   +T+  G   +F P V
Sbjct: 400 RVLQRGGVTQNGKVLALQDATLQDFVQGTQTTLASNVGSTTAIQTSTNISGFTGNFRPKV 459

Query: 323 LSPGRIGLRIQTEVSEPVI----------GVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           +  GRI +     +SE               +   + +  + + + +V L  G T+VL G
Sbjct: 460 I-NGRIMMVFDMTISELQPLQTFTSGSSASQSTVQLRTMPLARFEQSVGLRPGETLVLTG 518

Query: 373 LLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           + +        GI  P    +P+LG         +++T I +  T  L+
Sbjct: 519 MREQSTSTTNNGIGSPY---MPLLG---GGVDAQKKDTMIAVVITARLL 561


>gi|254252520|ref|ZP_04945838.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
 gi|124895129|gb|EAY69009.1| type II and III secretion system protein [Burkholderia dolosa
           AUO158]
          Length = 200

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 51/141 (36%), Gaps = 9/141 (6%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRT---MYLFGKNVGQANVI 100
            G    I + +     +     +Q V V DP  ADV++        + L  K  G  NV+
Sbjct: 21  AGASGTIELAVGAQRQISAGRALQRVAVGDPAVADVLIMKGSRSGSVLLVAKAPGATNVM 80

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           L      +    ++ +      ++   +  +  S  RV     T VL G   ++   +RA
Sbjct: 81  LWERGRDEPTVWNVEV------VDAAAQAVLDGSTPRVNAYGGTAVLRGTAASLDAHERA 134

Query: 161 VELSETFLSQSGRNQYANSSS 181
             +++   ++      +  + 
Sbjct: 135 AAVAKNTAAKGAIVDRSTVAD 155


>gi|281356794|ref|ZP_06243285.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316921|gb|EFB00944.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 554

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 52/290 (17%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
              Y+  + ++++   ++   + + +K+ + E+  +   ++G       ++ G       
Sbjct: 220 TANYSRKNIEEMLRKYDVPLPE-IKIKLNVYELYSENDDKLGVDFQAWKNNEGTDFFSVG 278

Query: 233 D----------FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                       G     +G + +     +       L  L      +      +T    
Sbjct: 279 GRFRDNWAATYGGTMARPQGSERTSFYNFNPKWNTRYLDFLTSKGKAKIAYSGEVTVRQN 338

Query: 283 QSASFTSGGQHLYKT--------------------------------------VSSSTGA 304
            +++ +   Q  Y                                           +   
Sbjct: 339 TTSTLSRTTQIFYTDTTVPPDDTQETIDNWFTRPLDNALQALGRESPGNDIRIGKDNQQN 398

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRV-RKADTTVELP 363
            +     +G ++      ++P    L+I  + S   IG  +   P  +       +V + 
Sbjct: 399 VTRAPQSFGFIMTVKAGSIAPEAAILQISLDNSSL-IGYQSSGAPRIQKGNTIRNSVMIS 457

Query: 364 SGGT-IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
           +     V+ GL K ++ +   G+P L  IP LG LF+    +  ++++ +
Sbjct: 458 TKRNEFVIGGLEKREVVRGSTGVPYLKDIPGLGYLFQVESESTRKSQLVV 507


>gi|187928617|ref|YP_001899104.1| PilN [Ralstonia pickettii 12J]
 gi|241114194|ref|YP_002973669.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
 gi|187725507|gb|ACD26672.1| PilN [Ralstonia pickettii 12J]
 gi|240868767|gb|ACS66425.1| type IV secretion pathway protein [Ralstonia pickettii 12D]
          Length = 563

 Score = 80.2 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 53/287 (18%), Positives = 89/287 (31%), Gaps = 34/287 (11%)

Query: 160 AVELSETFLSQSGRNQYANSSS--KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQH 217
           A  +++  L               +  +  L+     QV + V I EVR +     G   
Sbjct: 284 AEVIADPNLGTVTVTGTPPQCDRVEDWVRTLDAMFGKQVAIDVRIYEVRLNQEDNYGLNL 343

Query: 218 SITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSFE---TVLHALERATAIRTL 272
           S+   S       +F         S     SV   +     +     + AL     +  +
Sbjct: 344 SLGYKSGNGHTGATFTGVAPPTVSSNATPMSVGATIVGGKLDGTKVAVQALSTLGNVTQV 403

Query: 273 AEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS 324
              +    +G     QSA+   +    Q    +   ST +        G    FTP V+ 
Sbjct: 404 VSRSGVTQNGKVMAMQSATLQDYIPSSQTTLASNVGSTSSMQTAPDISGFTSTFTPKVV- 462

Query: 325 PGRIGLRIQTEVSEPVI-----GVNAGDMPSYRVRK-----ADTTVELPSGGTIVLAGLL 374
            GRI +     +S           +   +   ++R         TV L  G ++VL GL 
Sbjct: 463 NGRILIMFDMTLSNLNPLQEQTQGSGASLSKVQLRTKPLARFQQTVGLKPGESLVLTGLR 522

Query: 375 KDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                    G+  P    +P+ G         + ET I +  T  L+
Sbjct: 523 DQTTSTTNNGVGSPY---VPVTG---GGVDAAKRETMIAVVITARLL 563


>gi|150021136|ref|YP_001306490.1| secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
           BI429]
 gi|149793657|gb|ABR31105.1| Secretin/TonB, short N-terminal domain [Thermosipho melanesiensis
           BI429]
          Length = 369

 Score = 80.2 bits (196), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 29/205 (14%), Positives = 68/205 (33%), Gaps = 26/205 (12%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           +K+ + E+  + L++ G + S    ++    S+  +             +   L   +  
Sbjct: 166 IKIKLYEIDEEDLRKFGVEFSSNDETTTLKVSYNNN----------ALQLSLDLMDTNLF 215

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVV 315
            ++ AL  +   + L   T+   + +SA  ++     +   +       +       G V
Sbjct: 216 AIISALISSGKAKILTNGTIFLKANESAKISAYTTIDFTLSNDKVIEKKLLNEIEISGTV 275

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
                       + L +               +          +++L       +AGL  
Sbjct: 276 FV--------DHVSLNLTARAEALSPSNKTIGL------TFSNSLDLKYNKHYYIAGLSF 321

Query: 376 DDIQQLKEGIPLLSKIPILGALFRN 400
           +    ++ GIP L  +PI+G LF+ 
Sbjct: 322 ETTNNIESGIPGLKDLPIIGNLFKT 346


>gi|332308903|ref|YP_004436753.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332176232|gb|AEE25485.1| hypothetical protein Glaag_4580 [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 506

 Score = 79.8 bits (195), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 75/254 (29%), Gaps = 27/254 (10%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEG 242
           +   N     QV   + I + + ++  +      +   +       S   DF G  V   
Sbjct: 259 IQAENRKATAQVYFDIKIVDYQDEVGSEYSLNWDVVSKNLSAEGVVSLTNDFSGSLVDGT 318

Query: 243 GDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                              + AL+    +  + EP +T  + +     +G    Y   S 
Sbjct: 319 AAVLGYSKESGKYAGSSAFISALDNQGVVYNVIEPKITLRNNRIGKVINGADTTYLASSG 378

Query: 301 STGATSVTT-------HDYGVVLHFTPTVLSPGRIGL-------RIQTEVSEPVIGVNAG 346
           S   T+ +T          G+ L+    +       +           ++          
Sbjct: 379 SASTTTSSTGILIPGIVSTGLNLYAVANINLDDMSVIGAIANKYASLVDIGSVTSDDATI 438

Query: 347 DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406
             P    ++      +  G TI+L+GL +  + +    +           LF  ++ + +
Sbjct: 439 QTPETTRKEFHQEFFVRDGETILLSGL-RSRLSEYNSSVAGSM-------LFGGTKGSAD 490

Query: 407 E-TEIFIAATPFLV 419
             T   I  TP ++
Sbjct: 491 TYTNTVILLTPRII 504


>gi|283851709|ref|ZP_06368987.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
           FW1012B]
 gi|283572829|gb|EFC20811.1| type IVB pilus formation outer membrane protein [Desulfovibrio sp.
           FW1012B]
          Length = 468

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 28/269 (10%)

Query: 163 LSETFLSQSGRNQYANSSSKKV---MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI 219
           +     + S   +    S ++V   +  LN+    QV L V +  +      + G     
Sbjct: 206 VVSNQSAGSMTVRDTPDSVRRVATYVEDLNVRLSRQVALNVQVWSLNVTDNAEAGINLQA 265

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTA 279
               S  + +  +      ++      + G L   +   VL AL +      +       
Sbjct: 266 LFQDSNLTVAAGSLSEVGAINTATATILSGKLKDSA--GVLKALGQWGKASQVTSAGGLV 323

Query: 280 ISGQSASFTSGGQHLY-------KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
           +SGQ     +  +H Y        T  S T   +      G  +   P +L   R+ L+ 
Sbjct: 324 MSGQPVPVMAVQRHAYLAGVGKSTTDYSQTTEVTPGEVTTGFAMTVIPHILDQRRVILQY 383

Query: 333 QTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
              +S      E        ++P    +       +  G T+VL G  K+     K    
Sbjct: 384 NLNLSSLDEMKEFTTSDVTIELPQVSTQAFSQRSTMKLGQTLVLCGFEKESNSNKKT--- 440

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAAT 415
                  LG +  +   +   T + I   
Sbjct: 441 -------LGFINASRASDYGRTLLVITIR 462


>gi|213618889|ref|ZP_03372715.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 392

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 70/213 (32%), Gaps = 18/213 (8%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 193 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 244

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 245 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 300

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG---RIGL 330
           +P++  ++   A          K          + +   G +L  TP +L+     +I L
Sbjct: 301 QPSVVTLNNIQAVLDKNITFYTKL--QGEKVAKLESITTGSLLRVTPRLLNDNGTQKIML 358

Query: 331 RIQTEVSEPVIGVN-AGDMPSYRVRKADTTVEL 362
            +  +  +     +    +P  +  +  +   L
Sbjct: 359 NLNIQDGQQSDTQSETDPLPEVQNSEIASQATL 391


>gi|238898455|ref|YP_002924136.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466214|gb|ACQ67988.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 546

 Score = 79.4 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 39/254 (15%), Positives = 86/254 (33%), Gaps = 15/254 (5%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVR 206
           L G V+++    R                    + ++ ++  N     QV L + +  V 
Sbjct: 259 LQGAVKSMLTPGRGRLFLSAGNLTVTDVPRVLDTVERFVDERNQTLNRQVVLNIEVLSVE 318

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERA 266
                Q+G   +   ++S    S +  FGG   +                +  L AL   
Sbjct: 319 ARQKDQLGLDWNAVFNNSRWGLSLSQAFGGVSGNIMQGGFSVVDGRLAGSKVFLKALAEQ 378

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHF 318
             +  + + + T  +    +     Q  Y    ++    +V         T   G  ++ 
Sbjct: 379 AKVSVVTQQSSTTTNLSPVAMQVAEQEDYVAQVTTQATANVGTATSIQPATITTGFYINL 438

Query: 319 TPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLA 371
            P +L  G+       I L           G ++ ++ + +++     V++ +G T+VL+
Sbjct: 439 LPNILPDGQHLLLQFAINLSDPPTRRTFTSGESSVELLNTQLKTFTQRVKMKTGQTLVLS 498

Query: 372 GLLKDDIQQLKEGI 385
           G  +   +  K+G+
Sbjct: 499 GFQQASRKGSKQGV 512


>gi|281356728|ref|ZP_06243219.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316855|gb|EFB00878.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 627

 Score = 79.0 bits (193), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 5/137 (3%)

Query: 295 YKTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRV 353
           Y  +            ++G  L  TP V +   +I + +    +  ++G      P    
Sbjct: 456 YSYIIRKDKKRVTKQAEFGFTLELTPEVNTEASQIKVAMS---NTNLLGFKGNGEPRTSE 512

Query: 354 RKADTTVEL-PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
              +T++++   GG   + GL K  + +    +P L  IP LG +F     + ++T+I  
Sbjct: 513 TVLNTSLQMANDGGVFYIGGLEKSALVRSVSKVPFLGDIPFLGWVFAGESESVKKTQIVA 572

Query: 413 AATPFLVKPVAMRDLSR 429
             T   V P    D   
Sbjct: 573 VLTVVPVTPDTPVDARL 589


>gi|330951303|gb|EGH51563.1| type II and III secretion system protein:NolW-like protein
           [Pseudomonas syringae Cit 7]
          Length = 584

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/160 (20%), Positives = 63/160 (39%), Gaps = 23/160 (14%)

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS----------KSFAA 232
           ++++ L+I    QV ++  I E   D  KQ+G +   + ++SG               A 
Sbjct: 427 RIVSQLDIPVR-QVMIEARIVEANVDYNKQLGVRWGGSTNTSGSGKWTTYGLDNNGDEAG 485

Query: 233 DFGGKFVSE-----------GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAIS 281
           + G    S                 +  V +    +  L A+E+      +++P +    
Sbjct: 486 NTGSSTTSNVPFVDLGAADATTGIGLGFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSD 545

Query: 282 GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPT 321
            ++A    G +  Y+   SS+GAT+V+  +  + L  TP 
Sbjct: 546 KETAKILKGTEIPYQES-SSSGATTVSFKEASLSLEVTPQ 584


>gi|124514594|gb|EAY56106.1| probable type IV pilus biosynthesis protein [Leptospirillum
           rubarum]
          Length = 610

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 86/291 (29%), Gaps = 23/291 (7%)

Query: 147 LHGMVRTIQDSQRAVELSETF-LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEV 205
           +   V++I  SQ    ++++                 + +  +N +    V LKV + +V
Sbjct: 322 ISQSVKSILGSQGNFSIAQSAGTITVTTTPRIMGEVARYVREINDSLSRHVWLKVEVLDV 381

Query: 206 RRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKG---VLDRFSFETVLHA 262
             +      F  +        S S A        S  G   +      L   S   V+HA
Sbjct: 382 SLENQNTNSFNLTAALHGLMKSGSLAVTGQPGVFSLAGATPITTSTLTLPSSSTNAVIHA 441

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT---------VSSSTGATSVTTHDYG 313
           L     +  +    +T ++ Q+    +     Y             S+       T   G
Sbjct: 442 LSTQGKVSVVTRSFVTTLNDQAVPVQNVQNIGYLMENLAGIAGIGQSTFTQNIPGTVTVG 501

Query: 314 VVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367
             +   P +L    + L +  + +             +  +P+   R     V+L SG T
Sbjct: 502 FTMTLVPHLLDDKEMLLGVSIDDTNLNQMQTLQSNGGSIQLPNTSQRSFMQWVKLTSGET 561

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V+ G  +      + G       P    +            I I  TP +
Sbjct: 562 AVIGGYEQTRRVFQQNGT----GTPSNFWMGGGQNAETVRDAIVILVTPVV 608


>gi|188591492|ref|YP_001796091.1| type IV secretion pathway, outer membrane lipoprotein, putative
           precursor (pilN homolog) [Cupriavidus taiwanensis]
 gi|170938887|emb|CAP63888.1| type IV secretion pathway, outer membrane lipoprotein, putative
           precursor (pilN homolog) [Cupriavidus taiwanensis LMG
           19424]
          Length = 556

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204
           T+Q + +AV  +   +           +   V        +  L      QV + V + E
Sbjct: 264 TLQATAKAVAGASAEVVVDKNLGTLTVTGDPVQCDRIEQFVKSLAAMYGKQVAIDVQVYE 323

Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259
           VR       G   S+   SS      +F++             ++   +    F   + V
Sbjct: 324 VRVTREDNYGLNLSLAYQSSAGQTGVAFSSVSTPTISGSATPMNLGATIMSGPFAGSKAV 383

Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311
           + AL     +  +   +    +G     Q+A+   + +  Q        ST +    T  
Sbjct: 384 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 443

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361
           YG   +F P V+  GRI +     +S+                +  + +    +   ++ 
Sbjct: 444 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 502

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  G ++VL GL          G+    + P + AL       + +T I I  +  L+
Sbjct: 503 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 556


>gi|296100785|ref|YP_003610931.1| type IV pilus formation outer membrane protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295055244|gb|ADF59982.1| type IV pilus formation outer membrane protein [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 557

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 76/251 (30%), Gaps = 27/251 (10%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV L + I  V +   +Q+G    +   S     +          S      +  +  
Sbjct: 311 SRQVQLNIQIVSVNQTRNEQMGLDWGLVYKSLQNVGASLTGSMANASSSAASAGISILDT 370

Query: 253 RFSFET-------VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
                        ++HAL     +      T    +    ++         T SSST   
Sbjct: 371 ASGNAAKFSGSSLLIHALSEQGNVSMALNQTDPTANLTPVAYQLSKSTGMLTSSSSTATA 430

Query: 306 SV--------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--------IGVNAGDMP 349
           +V        T    G+ +   P +   G + L+     + P          G    D  
Sbjct: 431 NVGVTSTMTTTNVTTGLFMTMLPFIQENGDVQLQFAFSYTSPPDIKSFVSRDGNTRNDTA 490

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
                     V L SG T+VL G  + ++   K+G        ILG        +R  T 
Sbjct: 491 DTSTEGLARKVNLRSGQTLVLTGSEQQNVSADKQGTFTPGNF-ILG---GGQTGSRGRTT 546

Query: 410 IFIAATPFLVK 420
           + I  TP L++
Sbjct: 547 LVIMITPVLLR 557


>gi|293386468|ref|YP_003540630.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
 gi|291201111|emb|CBJ48249.1| conjugal transfer protein [Erwinia amylovora ATCC 49946]
          Length = 569

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 48/252 (19%), Positives = 81/252 (32%), Gaps = 31/252 (12%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV LKV I  V  +    IG   ++   +               V++ G  S   +  
Sbjct: 322 SRQVNLKVVIYTVNSETSDAIGIDWNVIYKTLAGKYGINLAGPSGTVADAGSLSFSVLDT 381

Query: 253 RFS-------FETVLHALERATA-IRTLAEPTLTAIS--------GQSASFTSGGQHLYK 296
                        +  AL +          P +T            Q A   S    +Y 
Sbjct: 382 ATGAARQFAGSSFLFEALSKQAKVADVRTIPLMTTNMASASVVVGRQIAYLKSVSTTVYS 441

Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347
           T S++  + ++T      G  +   P +L  G R+ L +   +S      E        +
Sbjct: 442 TGSTTLPSQTLTPGSVTTGTNITIFPKILDGGDRMMLNMFLNISSLIQLREISSDTEKLE 501

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS-KIPILGALFRNSRFNRE 406
            P    R     V L  G T+V++GL ++     ++G   LS    I G        ++ 
Sbjct: 502 APEVDSRSVPQRVWLKPGQTVVISGLEQNVATSNRQG--QLSPDNQITG---GQRSGDKT 556

Query: 407 ETEIFIAATPFL 418
                I  TP++
Sbjct: 557 RQSFVITVTPYI 568


>gi|331660223|ref|ZP_08361158.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli TA206]
 gi|331052490|gb|EGI24526.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Escherichia coli TA206]
          Length = 548

 Score = 77.9 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 27/292 (9%)

Query: 147 LHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS-KKVMNLLNIAGEDQVTLKVTIAEV 205
           +   V  +  ++ +  L+    + +  +     +   + +   N   + QV LKV +  +
Sbjct: 262 IKATVSAMLSAEGSSWLAPGSATLTVTDTPEVLNRIGEYIERQNAILDRQVKLKVDVYRI 321

Query: 206 RRDILKQIGFQHSITGS-SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALE 264
                KQIG   +   S + G   +  + FG                     E ++ AL 
Sbjct: 322 TFRDTKQIGIDWTAVYSAARGMGYTLTSAFGDAASDVATIGVTSSSGRLSGSEVLIKALN 381

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------THDYGVVLH 317
           +   I +         +   A      +  Y   +S+T + S +       T   G+ + 
Sbjct: 382 QQANISSATTTNTVTTNMVPAPLQIAKETTYLAKTSTTTSDSYSSTELEPGTITTGLFMT 441

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTVELPSGGTIV 369
             P +   G I L++   +S+           G  +   P+  VR       L  G T+V
Sbjct: 442 VLPYIRDNGTIQLQMSFSLSDDPTITTVSAKDGSTSIQTPTTDVRSLTQRANLKPGQTLV 501

Query: 370 LAG---LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           L G   L  +  +Q                        R+ + + +  TP L
Sbjct: 502 LNGFQSLYNEANRQGTTSKSWFG-------FGGGESAERDRSMLLVLVTPVL 546


>gi|38638012|ref|NP_942986.1| putative component of type II secretion apparatus [Ralstonia
           eutropha H16]
 gi|32527350|gb|AAP86100.1| putative component of type II secretion apparatus [Ralstonia
           eutropha H16]
          Length = 552

 Score = 77.9 bits (190), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 98/298 (32%), Gaps = 36/298 (12%)

Query: 153 TIQDSQRAVELSETFLSQSGRNQYANSSSKKV--------MNLLNIAGEDQVTLKVTIAE 204
           T+Q + +AV  +   +           +   V        +  L      QV + V + E
Sbjct: 260 TLQATAKAVAGASADVVVDKNLGTLTVTGDPVQCDRIEQFVKSLVAMYGKQVAIDVQVYE 319

Query: 205 VRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETV 259
           VR       G   S+   SS      SF++             ++   +    F   + V
Sbjct: 320 VRVTREDNFGLNLSLAYQSSSGKPDVSFSSVSTPTISGSATAMNLGATIMSGPFAGSKAV 379

Query: 260 LHALERATAIRTLAEPTLTAISG-----QSAS---FTSGGQHLYKTVSSSTGATSVTTHD 311
           + AL     +  +   +    +G     Q+A+   + +  Q        ST +    T  
Sbjct: 380 VQALSTLGNVSQVVSRSGVTQNGKVLALQTATLQDYVAQSQTTLAANVGSTSSIQTGTVT 439

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEP----------VIGVNAGDMPSYRVRKADTTVE 361
           YG   +F P V+  GRI +     +S+                +  + +    +   ++ 
Sbjct: 440 YGFTSNFLPKVV-DGRILMNFDMTLSDLLPLQRFNSGGDANQTSVQLRTMPTNRFTQSIT 498

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L  G ++VL GL          G+    + P + AL       + +T I I  +  L+
Sbjct: 499 LKPGESLVLTGLRNQKASTTNNGV---GE-PWMAALGGGVGALKGDTVIAIMISARLL 552


>gi|238899395|ref|YP_002925078.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229467157|gb|ACQ68930.1| PilN type IV pilus biogenesis outer membrane protein [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 560

 Score = 77.5 bits (189), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 41/260 (15%)

Query: 189 NIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSS----SGPSKSFAADFGGKFVSEGGD 244
           NI    QV LKV +  V  +   Q G   ++   S     G   + A + G    + G +
Sbjct: 307 NIKLSKQVLLKVVVYTVHTETADQSGIDWNVIFKSLSGKYGIHVANAFNAGSNLANGGFE 366

Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                      +   + +L AL     +  +   ++   +  +A    G Q  Y   +S 
Sbjct: 367 ILPTATGRASQWAGSQFLLKALSEQVKVSDVKTLSIMTTNLATAGMQIGKQTTYLRKTSV 426

Query: 302 TGATSVT-----------THDYGVVLHFTPTVLS-PGRIGLRIQTEVSEPV--------I 341
           T   + T               G  ++  P +L    ++ L +  ++S            
Sbjct: 427 TTGNTTTGAEPVQSLEPGEITTGTNINIMPKILEGNDKMMLTMMMDISSLNRLRRIENRN 486

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA----L 397
              + + P    R     V L  G T++++G  ++     + G+         G+    L
Sbjct: 487 KTESIEAPDTDSRSIPQRVWLKPGETVLMSGFEQNIQDGSQRGV---------GSSRHFL 537

Query: 398 FRNSRFNREETE-IFIAATP 416
           F      + + E   I  TP
Sbjct: 538 FGGGMSGKSKKESFVITITP 557


>gi|320107685|ref|YP_004183275.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
 gi|319926206|gb|ADV83281.1| type II and III secretion system protein [Terriglobus saanensis
           SP1PR4]
          Length = 617

 Score = 77.1 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 56/405 (13%), Positives = 126/405 (31%), Gaps = 92/405 (22%)

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRV 138
            +    +T+ +     G  N   +    ++M++L  L    +  +   +R         V
Sbjct: 223 AIPLDEKTILVAEDTPG--NRERLERQMEEMVSLPGLTTEQLNDIGNIVRNIFDVKQATV 280

Query: 139 EMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           +  + T+VL      +    R +E                           I G  +V L
Sbjct: 281 QPHAGTLVLRASAEKLNAINRTLE-------------------------DLIDGGSEVLL 315

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
           ++ +  V ++  +  G     + ++  P+ + ++             +   +    S   
Sbjct: 316 RLRLYSVSKNKSQDTGLTPPQSLTAFSPAGAASSLISANQTLADQIVASGALGTNPSQIA 375

Query: 259 VLHALERATAIR-----------------TLAEPTLTAIS-------------------- 281
           +  AL  +                      L+      ++                    
Sbjct: 376 IALALIASGVSSNLLTGSFLKVGGGLSTVILSTANSPTLNLTLSSSDSRSLDDVQLRLSD 435

Query: 282 GQSASFTSGGQHLYKTVSSSTGA--------------------------TSVTTHDYGVV 315
            ++ +F SG +    T + S+G                             +   D G+ 
Sbjct: 436 RETGTFRSGSRFPIVTSTYSSGISTAAGSSTAAALLSQFLGSSASSVVVPQIQYEDLGLT 495

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           L  TP +   G + + ++ ++          D+P    +   + + L +G T ++ GLL 
Sbjct: 496 LKATPHMQRSGDVSVHLELKIEALSGQAQ-NDIPILANQLVTSDLTLRAGETAMIMGLLT 554

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               +   GIP LS +P   ++  N+    E+ E+ +  TP +V+
Sbjct: 555 RSQSKAISGIPGLSDLPGFQSITDNTGNKMED-EMVLLLTPVVVR 598


>gi|281355620|ref|ZP_06242114.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281318500|gb|EFB02520.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 496

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 98/321 (30%), Gaps = 60/321 (18%)

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            A   +ET       +  +  +    +  L+     QV L++   EVR   L+ IG  + 
Sbjct: 160 AAYLNAETNTIYWKDDVASAKAILAWVQRLD-RPVPQVNLRLNYYEVRESKLRDIGVDYL 218

Query: 219 ITGSSSGPSKSFAADFGGKFVSE--------------------GGDFSVKGVLDRFSFET 258
              +  G +   A    GK  S                        +S  G      F+ 
Sbjct: 219 AWKNGPGLNLFAAGYDAGKVFSNEAVLQLLGGAKQFADLAKNFSTSWSYGGFFTAPQFDL 278

Query: 259 -VLHALERATAIRTLAEPTLT------------AISGQSASFTSGGQHLYKTVSSSTGAT 305
             +  L+++   R ++   LT                  A  T   Q+L K     T   
Sbjct: 279 SFVRLLQQSGNARLVSNADLTFLNTPLYGDGRDVTRTYYAELTPSYQNLKKDDDDRTDVV 338

Query: 306 SVTTHDYGVVLHFT-------------------------PTVLSPGRIGLRIQTEVSEPV 340
           +       V L  T                               G +       V+  V
Sbjct: 339 ADQAETPAVALKITNPVICFGAQTGEVDSVGMVPATGDFYENNRTGGVIFSYNLGVNSVV 398

Query: 341 IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
              N GD  S   R  D  + L      +L   +K+   +   GIP LS+IP+L  LF  
Sbjct: 399 ERNNRGDELSNYAR-IDGALTLGFKQEKLLGSYVKETDVEQTIGIPFLSRIPVLKYLFGT 457

Query: 401 SRFNREETEIFIAATPFLVKP 421
           +   +E++ I + A   LV P
Sbjct: 458 TTTLKEKSYIIVTAEARLVHP 478


>gi|134287991|ref|YP_001110155.1| type IVB pilus formation outer membrane protein [Burkholderia
           vietnamiensis G4]
 gi|134132641|gb|ABO60267.1| type IVB pilus formation outer membrane protein, R64 PilN family
           [Burkholderia vietnamiensis G4]
          Length = 563

 Score = 77.1 bits (188), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 43/260 (16%), Positives = 75/260 (28%), Gaps = 34/260 (13%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKS---FAADFGGKF 238
           KK ++  N      V   V +  V        G   +    +           A F    
Sbjct: 309 KKYIDYQNKRLSKFVQFNVKVYSVTLSNNDSAGVNWNALYQTVTGKYGIKLSGAAFSAPA 368

Query: 239 VSEGGDFSVKGVLDR--FSFETVLHALERATAIRTLAEPTLTAIS--------GQSASFT 288
            +    FSV           E V+ AL             L  ++        G    + 
Sbjct: 369 AAVSAGFSVLKSSGSPWSGTEAVVSALNEQGKANLERSQALPTLNFQAVATQVGTQTGYV 428

Query: 289 SGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI------G 342
           +G Q        S+ +  + T + G  L   P V     I ++    +S          G
Sbjct: 429 AGTQTTQTAQVGSSTSIQMGTINVGFNLSLFPYVQDNNDILVQFNLNLSNLDSIRKVNIG 488

Query: 343 VNAGDMPSYRVR-KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG-----A 396
            ++ + P+  +       V +  G T++L G+ ++D    + G          G     A
Sbjct: 489 DSSAEAPNINLPLNTVQKVRIRPGDTLMLTGINQNDDSSNRTGT---------GMHWNWA 539

Query: 397 LFRNSRFNREETEIFIAATP 416
           L          T + +  TP
Sbjct: 540 LGGGVNAQSNRTMLVVLITP 559


>gi|221235980|ref|YP_002518417.1| CpaC-like secretion pathway protein [Caulobacter crescentus NA1000]
 gi|220965153|gb|ACL96509.1| CpaC-related secretion pathway protein [Caulobacter crescentus
           NA1000]
          Length = 143

 Score = 76.7 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 53/119 (44%), Gaps = 5/119 (4%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           ++R    + ++       + A+  PI+      ++           + +   +   + + 
Sbjct: 1   MRRLSLAIAAVATLCGAAAGAQTLPIEP-----VSAKTSGAAVSVDLPVSAGQASYVSLA 55

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             V+D++V DP+ ADV V + RT+ + GK  G  +++  G +G+ + +  +++  +   
Sbjct: 56  GSVRDIVVGDPSIADVSVVNDRTLVVLGKRPGVTSLLAFGANGRPLADRQVVVSENGGG 114


>gi|255624862|ref|XP_002540535.1| conserved hypothetical protein [Ricinus communis]
 gi|223495099|gb|EEF21848.1| conserved hypothetical protein [Ricinus communis]
          Length = 150

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 1/109 (0%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
                   A        E  K  ++++ + K  ++++P  VQ   V +P     ++ +P 
Sbjct: 41  PTGAAPLRAEAGPNCKGEAAKPAQLALQVGKSSLMRLPEPVQHRSVGNPLVVQALMVAPD 100

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS 134
           T+Y+ G +VG  N+I+ G  G     LDI +  D + L+  L   + D 
Sbjct: 101 TLYIAGVDVGTTNMIIQGKSGLC-SVLDITVAMDPSALQAMLATAMPDE 148


>gi|290243112|ref|YP_003494782.1| type II and III secretion system protein [Thioalkalivibrio sp.
           K90mix]
 gi|288945617|gb|ADC73315.1| type II and III secretion system protein [Thioalkalivibrio sp.
           K90mix]
          Length = 551

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 55/292 (18%), Positives = 93/292 (31%), Gaps = 28/292 (9%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI--AEVR 206
           G + + + +    + + T   +   +     S    ++ +N     QV++ V I   E  
Sbjct: 259 GTMVSSRGAFSVSDTTGTITVRDVPDVVDRVSD--YVDNMNDTFSRQVSVDVQIYRVEAT 316

Query: 207 RDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD-----FSVKGVLDRFSFETVLH 261
            + L+ + +      ++     S         VS GG           + +    E  + 
Sbjct: 317 ENELRGVNWNALFNNNNMEFEVSSPGGNASGDVSPGGVRLSVPDGAGTLSNLVGSEGFIA 376

Query: 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH--------DYG 313
           +LE    +  +   TL  ++ Q A    G    Y    S T   +V +         D G
Sbjct: 377 SLEEIGDVSEVTSTTLQTVNNQPAPVRIGQTVSYLEEVSQTDTANVGSQASLTPGEVDVG 436

Query: 314 VVLHFTPTVLSPGR-------IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366
             +   P V   GR       I L     + E   G     +P    R       L SG 
Sbjct: 437 FSMQLLPHVQDNGRDMLMQVMITLSTLDRLEEFSSGDQTIQLPEVSSRDFVQRTWLQSGE 496

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            +VLAG         + GI + +    LG    N R       + I  TP +
Sbjct: 497 ALVLAGFESIQANLARSGI-IDADKWALG---GNRRAENTRESLIIVMTPTV 544


>gi|218195539|gb|EEC77966.1| hypothetical protein OsI_17332 [Oryza sativa Indica Group]
          Length = 1496

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 49/180 (27%), Gaps = 37/180 (20%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG 243
           V++ L+     QV ++  I EV  + + Q G Q      S G                  
Sbjct: 231 VIDQLD-GRRAQVLVESLIVEVAANKVAQFGIQWQGVMGSYGNGTIGVIGTNSSQGGGAN 289

Query: 244 DFSVKGVLDRFS----------------------------FETVLHALERATAIRTLAEP 275
             S+       +                               + + LE       L+ P
Sbjct: 290 ILSLALAAASGNTTTIANSAANLGAGLNVGIAPRVNGNYYLGALANFLESTGDANVLSTP 349

Query: 276 TLTAISGQSASFTSGGQHLYKTVSSS--------TGATSVTTHDYGVVLHFTPTVLSPGR 327
            L  +  + A    G    + T S +           T+V   D  ++L  +P   + G 
Sbjct: 350 NLMTLDNEEAQIIIGNNVPFVTGSYANSTGSSTVNPFTTVERKDVRLMLRVSPQSTNTGT 409


>gi|160902548|ref|YP_001568129.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
 gi|160360192|gb|ABX31806.1| hypothetical protein Pmob_1087 [Petrotoga mobilis SJ95]
          Length = 694

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/162 (18%), Positives = 59/162 (36%), Gaps = 9/162 (5%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
              F+ +++          +++P +    G  AS  S                 V+  + 
Sbjct: 528 TLQFDGIIN--GSKDKASLISKPVIYVNEGGRASIKSVLSVPVFDEEG----KIVSKIES 581

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAG 372
           G ++           I   + TE+   +  +   D      R  ++   +P+GG I L G
Sbjct: 582 GFIMEV---SGEYDNITKMVNTELDISISELKNEDKNIVDERNMNSKFIIPNGGFIKLGG 638

Query: 373 LLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           L    I + + GIP+  +IP++G LF +        ++ I  
Sbjct: 639 LNFTSIVENETGIPIFKEIPVIGQLFTSYEKTENVYDLVILI 680


>gi|149175013|ref|ZP_01853636.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
 gi|148845991|gb|EDL60331.1| bacterial type II/III secretion system protein [Planctomyces maris
           DSM 8797]
          Length = 308

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/173 (22%), Positives = 68/173 (39%), Gaps = 31/173 (17%)

Query: 259 VLHALERATAIRTLA-EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
            +  L++A  +  +   P +  +SGQSA+  SGG++    + +    TSV    +GV   
Sbjct: 156 AIEQLKKAGRVTVVHGSPEIVTVSGQSATSMSGGKYP-VLIPAGDNQTSVEWKRFGVFCK 214

Query: 318 FTPTVLSPGRIGLRIQTEVSE----PVIGVNAGDMPSYRVRKADTTVELPSGGTIVL--- 370
             P +L  GRI L    E+S+      + VN   +P   VR+  T  E+  G T+V+   
Sbjct: 215 VEPRLLDNGRIQLEFSPEISQRDYANAVKVNGLTIPGLTVRRIYTQAEMNLGETLVVRTV 274

Query: 371 ---AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
               G  +  +                    ++   + E+T      TP  + 
Sbjct: 275 SPAGG--QSQVVNA-----------------KSDTTSSEDTVTLFMVTPVAID 308


>gi|213647736|ref|ZP_03377789.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 396

 Score = 75.2 bits (183), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 78/247 (31%), Gaps = 52/247 (21%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 192 SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 242

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 243 -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 271

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYK 296
             +    + S    LD   F   ++ALE       ++ P L       A F +      K
Sbjct: 272 DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVLLTQENVPAIFDNNRTFYTK 331

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSY 351
            +       ++    YG ++   P   + G+I + +  E       +     +   +P  
Sbjct: 332 LIGERN--VALEHVTYGTMIRVLPRFSADGQIEMSLDIEDGNDKTPQSDTTTSVDALPEV 389

Query: 352 RVRKADT 358
                 T
Sbjct: 390 GRTLIST 396


>gi|153878167|ref|ZP_02004504.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152065369|gb|EDN65496.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 93

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 1/67 (1%)

Query: 360 VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGA-LFRNSRFNREETEIFIAATPFL 418
           + +  G  IV+ GL++ + Q  K+GIP L   P++G+ LF ++  N + TE+ +   P +
Sbjct: 1   MVVRDGTAIVIGGLIQVNNQDDKQGIPGLQDFPLIGSILFSSTSNNDKHTELVLIIIPEV 60

Query: 419 VKPVAMR 425
           V P A  
Sbjct: 61  VNPAADN 67


>gi|303328014|ref|ZP_07358453.1| putative type IVB pilus formation outer membrane protein, R64 PilN
           family [Desulfovibrio sp. 3_1_syn3]
 gi|302861840|gb|EFL84775.1| putative type IVB pilus formation outer membrane protein, R64 PilN
           family [Desulfovibrio sp. 3_1_syn3]
          Length = 531

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 74/269 (27%), Gaps = 28/269 (10%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLL---NIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
            +     + +   +    + ++V N +   N     QV L V +  +      + G    
Sbjct: 264 SVVGNQAAGTMTVRDRAENVRQVSNYIAEINKRLSRQVALTVHVWALEVTDENEAGLDFQ 323

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +  ++   S    +       S      V G L       VL AL+       +      
Sbjct: 324 VLFANDNVSIVAGSLASLGSPSSASATIVSGKLKNS--TGVLKALKEWGNATQVTSGGGL 381

Query: 279 AISGQSASFTS-------GGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
            +S Q     +        G    ++    T   +      G  +   P +L   R+ L+
Sbjct: 382 ILSNQPVPIQAIKRIAYLAGSSSSQSDYGQTTEITPGEVTTGFAMTIIPHILDRRRVLLQ 441

Query: 332 IQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
               +S      E         +P    R       +  G T+VLAG      +      
Sbjct: 442 YSINLSSLDELTEFSTSDLTVQLPKTSTRAFSQRSTMQMGQTLVLAGFQDQSQKLANS-- 499

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAA 414
                   LG L         +T + I  
Sbjct: 500 --------LGLLNFGRGAKYGKTLLVITI 520


>gi|150377244|ref|YP_001313839.1| hypothetical protein Smed_5129 [Sinorhizobium medicae WSM419]
 gi|150031791|gb|ABR63906.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 170

 Score = 74.8 bits (182), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 59/158 (37%), Gaps = 2/158 (1%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
                  L  +  ++       E  + V+ +    +G      + ++    + +P     
Sbjct: 3   RRSTGAVLLLAMSALVSPATADEQKSPVVPVQQKSVGADGVERLVVDFAKTVTLPRPAST 62

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           V++ +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L   + 
Sbjct: 63  VIIGNTGIAQASLSDDRTVILTGKTPGSTNLIVIDRDGAEVANLILDVVAGSGRLVT-VH 121

Query: 129 RFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +  +        D V+L G      ++  A +++  
Sbjct: 122 QGLRRATFTCGRRCDPVLLVGDDADHFNA-TASQIAAR 158


>gi|16263312|ref|NP_436105.1| hypothetical protein SMa1580 [Sinorhizobium meliloti 1021]
 gi|14523991|gb|AAK65517.1| conserved hypothetical protein [Sinorhizobium meliloti 1021]
          Length = 170

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I +     G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAKGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L   + +   
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            +        D V+L G      ++  A +++  
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158


>gi|213649903|ref|ZP_03379956.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 109

 Score = 74.0 bits (180), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
             T   +P G ++++ G  +D      + IP+L K+P++G+LFR S  N+          
Sbjct: 2   ISTIARVPHGKSLLVGGYTRDANTDTVQSIPVLGKLPLIGSLFRYSSKNKSNVVRVFMIE 61

Query: 416 PF-LVKPVAMRD 426
           P  +V P+    
Sbjct: 62  PKEIVDPLTPDA 73


>gi|307318076|ref|ZP_07597512.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306896117|gb|EFN26867.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
          Length = 170

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 57/154 (37%), Gaps = 2/154 (1%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I       G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPFQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L   + +   
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            +        D V+L G      ++  A +++  
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158


>gi|307304369|ref|ZP_07584120.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|306902571|gb|EFN33165.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 170

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 27/154 (17%), Positives = 58/154 (37%), Gaps = 2/154 (1%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVS 72
              L  +  ++ +     E   A+I +     G      + ++    + +P     V++ 
Sbjct: 7   GAVLLLAMSALVRPAAADEQKTAIIPVQQRSTGAEGVERLVVDFAKTVALPRPASTVIIG 66

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIA 132
           +   A   +   RT+ L GK  G  N+I+I  DG ++ NL + +      L   + +   
Sbjct: 67  NTGIAQASLSDDRTVILTGKTPGSTNLIVIDSDGAEVANLVLDVVASSGRLVT-VHQGAR 125

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            +        D V+L G      ++  A +++  
Sbjct: 126 RATFTCARRCDPVLLVGDDADHFNA-TASQIAAR 158


>gi|87120224|ref|ZP_01076119.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
 gi|86164327|gb|EAQ65597.1| general secretion pathway protein (PilQ) [Marinomonas sp. MED121]
          Length = 57

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 31/56 (55%)

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            G T+ L GL+ ++ +Q + G+P+L  +P +G LFR+      + E+ +     ++
Sbjct: 2   DGETMALGGLVSEETRQSESGVPMLKDLPFIGRLFRSESKETVQRELTVLIKTQIL 57


>gi|153829316|ref|ZP_01981983.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
 gi|148875216|gb|EDL73351.1| MSHA biogenesis protein MshL [Vibrio cholerae 623-39]
          Length = 429

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 46/150 (30%), Gaps = 16/150 (10%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD---------------FG 235
               QV L+  I EV      Q G   S   SS+G S +  +                 G
Sbjct: 273 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGASYNIGSGTITQDSNGNPITSVLPG 332

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
              +          V+   SF+ V+  +     +  L+ P +TA + Q A    G    Y
Sbjct: 333 LDAIGNLLGGQSNVVISSGSFDAVISFMATQGDLNVLSSPRVTASNNQKAVIKVGTDEYY 392

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSP 325
            T  SS   T          +  TP     
Sbjct: 393 VTDLSSVVGTG-DNAQASPDITLTPFFSGD 421


>gi|160903268|ref|YP_001568849.1| NolW domain-containing protein [Petrotoga mobilis SJ95]
 gi|160360912|gb|ABX32526.1| NolW domain protein [Petrotoga mobilis SJ95]
          Length = 388

 Score = 73.2 bits (178), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 70/222 (31%), Gaps = 18/222 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + L V I E              +   +              F S    FSV+ +     
Sbjct: 176 IELTVYIVETNERYSD-------LIKGNVFNINQKGIINSFSFTSPAIGFSVQDL----- 223

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
           FE  +   E+      + +  +  + G+ A  +          +      ++     G+ 
Sbjct: 224 FEAEIEMYEKNETANLVTKQVVNVLPGEPALLSLKNLESIVFTTYRNEFRNIE---SGIE 280

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
           +  TPT+++     L+I        +     D       + +T V L     +++A L  
Sbjct: 281 IEMTPTMMNQ---ILQISFRTKTTNLMEVTNDSYLLSESELETKVNLNPNEILLIADLDL 337

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPF 417
             +     G  LL  +P L  LF +++   E   + I  T  
Sbjct: 338 SQLYSKNGGTTLLKDLPFLRFLFGDNQNIDESKRMMIFLTAT 379


>gi|58038376|ref|YP_190345.1| PilN [Gluconobacter oxydans 621H]
 gi|58000790|gb|AAW59689.1| PilN [Gluconobacter oxydans 621H]
          Length = 571

 Score = 72.9 bits (177), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 90/296 (30%), Gaps = 38/296 (12%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKV------MNLLNIAGEDQVTLKVTIAEVRR 207
            + +      ++    +         +  +V      ++ L+ +   QV + V +  ++ 
Sbjct: 280 QKTADTIANGAQVIADEGLGTLSVTGNPDQVTRVSDWIHSLSESLMQQVAIDVHVYTLKE 339

Query: 208 DILKQIGFQHSITGSSSGPSKSF-----------AADFGGKFVSEGGDFSVKGVLDRFSF 256
                 GF   I   + G                  D    F +   D +          
Sbjct: 340 THETNYGFSPQIALKNYGKVYGLSMIPAAIPGMQTNDIPFSFGASILDTAKGAAGQFSGS 399

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTS--------GGQHLYKTVSSSTGATSVT 308
           +  + AL     +  +   +  A +G SA F +            +  + + S+   S  
Sbjct: 400 QLAIQALSELGNVTEMYSRSAVATNGMSAPFQNGINTTYLANSSTVLASNAGSSATLSPG 459

Query: 309 THDYGVVLHFTPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELP 363
               G +   TP ++           L+    +       ++   P       D TV L 
Sbjct: 460 VVMSGFMGEITPRIVDQRILLHINFLLQTLLSIQTFQSNGSSIQEPKTSSTSLDDTVVLR 519

Query: 364 SGGTIVLAGLLKDDIQQLKEGI--PLLSKIPILGALFRNSRFNREETEIFIAATPF 417
           SG T++L+G + D   + + G+  PL      LG          ++T++ +     
Sbjct: 520 SGSTLMLSGYVDDSSSRDRTGVGSPLF----WLGG--GGGDAQTQKTQVIVTVEAH 569


>gi|189017140|ref|YP_001909457.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
 gi|188027077|emb|CAO94861.1| Lipoprotein [Erwinia tasmaniensis Et1/99]
          Length = 568

 Score = 72.5 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 48/251 (19%), Positives = 80/251 (31%), Gaps = 29/251 (11%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             QV LKV I  V  D+   +G   S+   +            G  + + G  S   +  
Sbjct: 321 SRQVNLKVVIYTVNSDVSDAVGLDWSVIYKTLAGKYGINLAGPGGSIVDAGSLSFSVLDT 380

Query: 253 RFSF-------ETVLHALERATAIRTLAEPTLTA---------ISGQSASFTSGGQHLYK 296
                        +  AL +   +  +    L           +  Q A   S    +Y 
Sbjct: 381 ATGSARQFAGSSFLFDALSKQAKVADVRTIPLMTSNMASASVVVGRQIAYLKSVATTVYS 440

Query: 297 TVSSSTGATSVTT--HDYGVVLHFTPTVLSPG-RIGLRIQTEVS------EPVIGVNAGD 347
           T +S+  + ++T      G  +   P VL  G R+ L +   +S      +        +
Sbjct: 441 TGNSTLPSQTLTPGSVTTGTNITIFPKVLDGGDRMMLNMFLNISSLIQLRQISSDTEKLE 500

Query: 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            P    R     V L  G T+V++GL ++     KEG+       + G            
Sbjct: 501 APEVDSRSVPQRVWLKPGQTVVISGLEQNVTNVNKEGM-FSPDNIVTG---GKRSGGSIR 556

Query: 408 TEIFIAATPFL 418
               I  TPF+
Sbjct: 557 QSFVITVTPFI 567


>gi|269123031|ref|YP_003305608.1| Type II secretory pathway component PulD-like protein
           [Streptobacillus moniliformis DSM 12112]
 gi|268314357|gb|ACZ00731.1| Type II secretory pathway component PulD-like protein
           [Streptobacillus moniliformis DSM 12112]
          Length = 312

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 97/324 (29%), Gaps = 57/324 (17%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHL-------EMTLRRFIADSNIRVEMVSDTVVLHGMV 151
           + +      ++ N ++    ++  +       E  + +      +++  V D  +L G  
Sbjct: 27  IKIYNEKKVEIKNKEVKKVEEVYEILKIQNIPENEILKLDGSFGVKIRKVGDKYILSGEK 86

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           + I   +  +                       MN               + +       
Sbjct: 87  KNISKLKHII----------YSIDKIKKQIIIKMN---------------VIDTSISFFD 121

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
           + G    +        ++       KF+      S    L        + AL+++  +  
Sbjct: 122 RFGLNLKLE-------ENKNDGLVAKFLENKLSLSNLLNLGGAKLGLDIEALKQSGDMYI 174

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR---I 328
            + P++  +           +  +K          V T + G++    P +++ G    +
Sbjct: 175 KSFPSIMVLDNSEGEMRITDELSFKVSEK-----KVQTSEAGLIFKIKPRIVTKGYKEFV 229

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLL 388
            L I +E+S                   +T V L    +  ++G+ ++         P  
Sbjct: 230 ELEIYSEISSFKSEKVR------SKNILNTKVLLKDKTSTFISGVGRESKSINISN-P-- 280

Query: 389 SKIPILGALFRNSRFNREETEIFI 412
             IPI   LFR    N+E+  I++
Sbjct: 281 -SIPIFSTLFRKKSKNKEKRNIYV 303


>gi|281356727|ref|ZP_06243218.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
           BAA-548]
 gi|281316854|gb|EFB00877.1| hypothetical protein Vvad_PD2101 [Victivallis vadensis ATCC
           BAA-548]
          Length = 479

 Score = 72.1 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/274 (16%), Positives = 87/274 (31%), Gaps = 41/274 (14%)

Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA-------------DFGGKFVSE 241
           QV L + +  +  +  +++G  +    +  G                    DF     S 
Sbjct: 196 QVQLNIYV--ISDNNFRELGIDYLAWKNGPGAEIFATGFDFSNFYSVEHLQDFTNILSSG 253

Query: 242 GG--DFSVKGVLDRFSFETV-LHALERATAIRTLAEPTLTAISGQSAS------------ 286
                  + G+L   +F+   L  L +     T A   LT  +  +              
Sbjct: 254 PIWDATGLGGILVAPNFDATFLRMLAQKGKAWTAASAMLTLTNDFTTPAATSWEDASYRF 313

Query: 287 -FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG------RIGLRIQTEVSEP 339
            FT   Q++ K  + +T   ++   ++   L                 +      EV+  
Sbjct: 314 KFTPQLQNIVKDENQTTSLDALDGSEFSFYLSSPVICFGDDPAKKALTLMCNWNLEVNSL 373

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFR 399
           V   N   + +       + + L +G   +LA   K  + +   G+P L +IP+L  LF 
Sbjct: 374 VETDN-QGVATIDSNSFSSNLTLEAGTEKLLAVYDKHVVTEQYNGMPFLGEIPVLKYLFG 432

Query: 400 NSRFNREETEIFIAATPFLVKPVAMRDLSRPDDH 433
                  +    +  T   V PV  +++  P   
Sbjct: 433 AESKVDSKMR--VFVTMSAV-PVETKNIPNPAAG 463


>gi|114798749|ref|YP_761695.1| hypothetical protein HNE_3018 [Hyphomonas neptunium ATCC 15444]
 gi|114738923|gb|ABI77048.1| conserved hypothetical protein [Hyphomonas neptunium ATCC 15444]
          Length = 147

 Score = 71.7 bits (174), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 52/102 (50%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
            +K A  A+ ++        +++S+  +K + L++      ++V +   ADV VH  R +
Sbjct: 4   AVKPALVALASLFLAGTAFAQQLSVEASKTVPLRLTGPAASIVVGNKNIADVAVHDDRLI 63

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           ++ GK+ G  N+++    G+++ + ++++  + + L    R 
Sbjct: 64  FVTGKSYGTTNLMVFNKAGEEVYSAEVVVTANSSSLVTVNRA 105


>gi|45751681|emb|CAF21324.1| InvG protein [Burkholderia pseudomallei]
          Length = 214

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 75/219 (34%), Gaps = 22/219 (10%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G+     D  RAV   +T               + ++  L++  + Q+ L + I ++R+ 
Sbjct: 10  GVALPASDGVRAVAYPDTNSVILVGRLDKVQDMEALIRSLDV-EKRQIELSLWIIDIRKS 68

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
            L Q+G       ++ G    F    G               LD   F   + AL +   
Sbjct: 69  RLDQLGIDWQGALNAPGIGVGFNNRGGNVT-----------TLDGTRFLASVAALSQTGD 117

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG-R 327
              ++ P +       A+F S      K +   T    +    YG +++  P +   G +
Sbjct: 118 ATVISRPIVLTQENVPATFDSNQTFYAKLIGERT--VQLDHVTYGTLVNVLPRLTRDGSQ 175

Query: 328 IGLRIQTE-------VSEPVIGVNAGDMPSYRVRKADTT 359
           + + +  E        S+  I ++   MP     + +T 
Sbjct: 176 VEMIVDIEDGNTDGATSDGQIVIDNNTMPLVNRTEINTV 214


>gi|330983953|gb|EGH82056.1| putative lipoprotein [Pseudomonas syringae pv. lachrymans str.
           M301315]
          Length = 561

 Score = 71.3 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 31/276 (11%)

Query: 170 QSGRNQYANSSSKKVMNLLNIA---GEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP 226
            S          +KV   +         Q+ ++  + E+  D   +   Q S   S  G 
Sbjct: 291 GSLTVTDTPQVMEKVSRYIKTQNAIANKQIAIRADVYEINSDENGEFDPQLSALYSFGGF 350

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                 D      +           D  S       L     +  ++  T+ A +G+   
Sbjct: 351 KLGMQDDTFTFSPNRDSTTMNHKFSDSSS--AAFKLLRTNKNVAQVSSSTIYAQNGEPTP 408

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDY---------------GVVLHFTPTVLSPGRIGLR 331
           F    +  Y        ++S  +                  G  +   P V S GR+ ++
Sbjct: 409 FQQLDEIGYLAEVQIETSSSSESSSSDASNLATLKPGKTSQGYSMTIIPRVTSDGRVMMK 468

Query: 332 IQTEVSEPVI-------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
              + S           G     +PS    K +  V + SG  +++AG+ +         
Sbjct: 469 FAVDSSRLNSIDSYGLDGGAQIQVPSRSTNKNNQLVTVKSGEPLMIAGIERTANNATITS 528

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
            PL  K  +LG    +    +++    I  TP+++K
Sbjct: 529 -PLGRKSWLLG---GSQSGGKKKIMTMIVLTPYIMK 560


>gi|221215376|ref|ZP_03588341.1| putative component of type II secretion apparatus [Burkholderia
           multivorans CGD1]
 gi|221164808|gb|EED97289.1| putative component of type II secretion apparatus [Burkholderia
           multivorans CGD1]
          Length = 550

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 26/274 (9%)

Query: 168 LSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP- 226
           +             ++ +  LN +    + + V++ EV     +  G   S+   SS   
Sbjct: 281 VITITGTPPQCDRLERWIKELNASFSKSIAIDVSVYEVHLSNNENYGANLSLAYKSSSGH 340

Query: 227 -SKSFAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISG 282
              SF+     K        S+   +           + AL     +  + + +    +G
Sbjct: 341 TGVSFSGASVPKVSGAASAMSLGATILSGPMAGSTAAVQALSALGNVSQVVQRSGMTQNG 400

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLS-------PGRIGLRIQTE 335
           ++ +  +     Y   + ST A +V           TP            GRI +     
Sbjct: 401 KALNLQAATDQDYVNQTQSTLAANVGATSGIQTATVTPGFTGSFLPRYRDGRIFVVFDMT 460

Query: 336 VSEPV----------IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           +S                 +  + + +  +   +V L  G ++V+ G+ +      K G+
Sbjct: 461 LSNLTALEPYPPNPKTDQASVQLRTLQKSRFQQSVSLKPGDSLVITGMYQQTASVNKNGV 520

Query: 386 PLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 P+LG         +++T + I  +  ++
Sbjct: 521 -GSPSFPLLG---GGIDAQKKDTILAIVISARVL 550


>gi|322436034|ref|YP_004218246.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
 gi|321163761|gb|ADW69466.1| type II and III secretion system protein [Acidobacterium sp.
           MP5ACTX9]
          Length = 635

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 5/143 (3%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
             + G SAS            +SS     +   D G+ L  TPTVL  G I + I  ++ 
Sbjct: 477 VTVGGVSASSLLNQ----YLGASSQTIPQIQYEDIGITLKTTPTVLKSGLITMHIDLKI- 531

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E + G +A ++P    R   + V  P G T ++   L         GIP L+++P     
Sbjct: 532 EALTGQSANNIPVLTSRVFTSDVTCPEGSTAMMLSQLSSQESAAVSGIPGLAELPGFQTS 591

Query: 398 FRNSRFNREETEIFIAATPFLVK 420
             +    R+ +E+ +  TP LV+
Sbjct: 592 VADRITERDSSELVMMVTPHLVR 614


>gi|325271188|ref|ZP_08137740.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
 gi|324103677|gb|EGC00972.1| Type II secretory pathway, component PulD [Pseudomonas sp. TJI-51]
          Length = 360

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 49/259 (18%), Positives = 91/259 (35%), Gaps = 24/259 (9%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            RD+A+L  TL+            V+  V + G   +   S +    S            
Sbjct: 117 YRDVAYLSETLQPLFEGR----FAVNRQVSVPGATPSPLSSPQGSAASLVSRDSDHLVFV 172

Query: 177 ANSSSKKVMNLLNIAGE---DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD 233
            + +  + + LL    +    +V ++  + EV+              GS+   + S    
Sbjct: 173 GSKAEIEKVKLLLPQIDIAMGEVMVRGVVYEVQTGDSN---------GSAFSLAASLLKG 223

Query: 234 FGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                ++ G  F  +  L    F  VL AL      R +++P+L   SG  A+F+ G + 
Sbjct: 224 KLNITLA-GNPFDNQVSLSTSDFSAVLSALSSDNRFRVVSQPSLRVRSGAEATFSVGAEV 282

Query: 294 L-----YKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GD 347
                      S     SV   D GV+ +  P  +    + L +  ++S  V       +
Sbjct: 283 PVLGAVSYAQGSGEPIQSVQYRDSGVIFNLRPQ-VRESTVDLVVDQQLSNFVQTTTGVNN 341

Query: 348 MPSYRVRKADTTVELPSGG 366
            P+   R+  T+V++    
Sbjct: 342 SPTLTKRQLTTSVQMRDRE 360


>gi|325107410|ref|YP_004268478.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
 gi|324967678|gb|ADY58456.1| type II and III secretion system protein [Planctomyces brasiliensis
            DSM 5305]
          Length = 1546

 Score = 70.5 bits (171), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 37/64 (57%)

Query: 356  ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
              T V +P GGT++L G+ +    +   G+P+L+KIP +  LF+N+   RE   + +  T
Sbjct: 1469 VQTVVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNTGVGRETESLMLMVT 1528

Query: 416  PFLV 419
            P ++
Sbjct: 1529 PRII 1532


>gi|222147187|ref|YP_002548144.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
 gi|221734177|gb|ACM35140.1| pilus subunit transmembrane protein [Agrobacterium vitis S4]
          Length = 159

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 18/119 (15%)

Query: 6   RTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           R  F+M    LF          +A +P    A   +             + + +N+  IL
Sbjct: 7   REMFSMALPMLFRCCFAFLLAGMATVPGTAHAEDPL-------------LRVVMNQARIL 53

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           ++   V  V++ +   AD  V  P+T+ L G++ G  N++L+   G  + +  IL+  D
Sbjct: 54  KLDRPVSKVIIGNEKVADATVADPKTIVLTGRSFGTTNLVLLDSQGNAIFDERILVSID 112


>gi|114568966|ref|YP_755646.1| hypothetical protein Mmar10_0415 [Maricaulis maris MCS10]
 gi|114339428|gb|ABI64708.1| conserved hypothetical protein [Maricaulis maris MCS10]
          Length = 152

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 46/91 (50%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A A  + I  V       +++ +    ++++P +   ++V +P+ AD +VH  RT+ + G
Sbjct: 6   ATAFTLAIVCVAPAAAHDLAVPVEHAEVIRLPAEASAIVVGNPSIADALVHDGRTLVVTG 65

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           +  G+ NVI +   G+ +   DI++   +  
Sbjct: 66  RLQGRTNVIALDRVGRVIYERDIVVSNPVEG 96


>gi|296120909|ref|YP_003628687.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
 gi|296013249|gb|ADG66488.1| hypothetical protein Plim_0641 [Planctomyces limnophilus DSM 3776]
          Length = 1566

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 40/72 (55%)

Query: 348  MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREE 407
            +P        TTV +P GGT++L G+ +    +   G+P+L+KIP +  LF+NS   RE 
Sbjct: 1481 LPVVEQVTVLTTVSVPDGGTVLLGGVKRLREGRNMAGVPILNKIPYVSRLFKNSGVGRET 1540

Query: 408  TEIFIAATPFLV 419
              + +  TP +V
Sbjct: 1541 ESLMLMVTPRIV 1552



 Score = 43.6 bits (101), Expect = 0.071,   Method: Composition-based stats.
 Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 9/137 (6%)

Query: 224  SGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQ 283
             G       DFGG   + G    +  + D  +F   + A +  +    L  P LT  +GQ
Sbjct: 1266 QGSFDIGVPDFGGFDPTAGITTGLAILSDLEAF-FFIQAAQGDSRSNLLFAPKLTLFNGQ 1324

Query: 284  SASFTSGGQHLYKTVSSST-------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTE 335
            +A+ +      + T  ++T           +     GV L  T  + +  R + L I   
Sbjct: 1325 TATVSDTVNRFFVTGYNTTVGVGAAIQTPQIQQFPEGVSLTVTAVISADRRYVRLTIIPN 1384

Query: 336  VSEPVIGVNAGDMPSYR 352
             +               
Sbjct: 1385 FTSITDVQTFSTASGVT 1401


>gi|59714055|ref|YP_206830.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
           fischeri ES114]
 gi|59482303|gb|AAW87942.1| toxin coregulated pilus outer membrane protein TcpC [Vibrio
           fischeri ES114]
          Length = 484

 Score = 70.5 bits (171), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/215 (15%), Positives = 74/215 (34%), Gaps = 8/215 (3%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            ++ + L    + QV+++  I  + +  L Q+  +  +    +  + +          + 
Sbjct: 235 DQLFDRLKAESQMQVSVQYRIISLSKSKLSQLAAKFGLDSKGNDFTITSELVDSVALNAA 294

Query: 242 GGDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYK--- 296
           GG  S          + V+  L +   +    +  P        + + +   +       
Sbjct: 295 GGGLSFAKRSVSGRLDAVVKYLAQDVVSEGHFVGLPNRIMPINLTTTSSYISEVEKVDNE 354

Query: 297 TVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--IGVNAGDMPSYRVR 354
            V  ST +   +    G+ +   P VL  GRI L       + +    V+   +P+    
Sbjct: 355 NVDKSTTSLKTSEIKTGLSMLILPKVLEDGRIQLTSGFTKKQLIAMDTVSGVQLPTVDEN 414

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +  +TV L SG   ++  L K +     +   LL 
Sbjct: 415 ETLSTVTLDSGDVELIT-LYKGNSNNSAQAAQLLG 448


>gi|239833241|ref|ZP_04681570.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
 gi|239825508|gb|EEQ97076.1| Hypothetical protein OINT_1002558 [Ochrobactrum intermedium LMG
           3301]
          Length = 139

 Score = 69.8 bits (169), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 50/103 (48%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTM 87
                 A +  I+  +      I++  ++  IL++      V++ +P+ AD VV   +T+
Sbjct: 14  VPAMGAAFMAVIAVAQASAEDYIALETSQARILRLARPADSVVIGNPSIADAVVQDAQTI 73

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
            L GK+ G  N++++   G+ +L+ ++++ R+        R+ 
Sbjct: 74  VLTGKDFGVTNIVVMDKQGEPILDRELVVSRNTRGTTRIYRQA 116


>gi|90409526|ref|ZP_01217562.1| type II secretion system protein [Psychromonas sp. CNPT3]
 gi|90309367|gb|EAS37616.1| type II secretion system protein [Psychromonas sp. CNPT3]
          Length = 98

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 12/82 (14%), Positives = 37/82 (45%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
             + K +++ L++  +L +P   + + ++    AD    +   + +FGK VG  ++ ++ 
Sbjct: 17  SAQAKTLNVTLDQAKLLVLPKTAKSIFIASDRVADYQTLTNTKIMIFGKRVGSTSLYVLD 76

Query: 104 HDGKQMLNLDILIERDIAHLEM 125
                + +  + +  ++  L  
Sbjct: 77  ARENVIYSATVKVNHNVQELNA 98


>gi|167648156|ref|YP_001685819.1| hypothetical protein Caul_4197 [Caulobacter sp. K31]
 gi|167350586|gb|ABZ73321.1| conserved hypothetical protein [Caulobacter sp. K31]
          Length = 131

 Score = 69.4 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 37/88 (42%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           ++   +         +S+   +   + +   V+DV+V +P  ADV + + RT+ + GK  
Sbjct: 13  SLGATAAGAQSLASPLSVSAGQAARISLSAPVRDVVVGNPAVADVSLINERTLVILGKKA 72

Query: 95  GQANVILIGHDGKQMLNLDILIERDIAH 122
           G   V+     G  + +  +++      
Sbjct: 73  GATTVMAFDARGHALADRQVVVSDIPDG 100


>gi|225872364|ref|YP_002753819.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
 gi|225793711|gb|ACO33801.1| transporter, outer bacterial membrane secretin (Secretin) family
           [Acidobacterium capsulatum ATCC 51196]
          Length = 616

 Score = 69.0 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/149 (21%), Positives = 59/149 (39%), Gaps = 2/149 (1%)

Query: 278 TAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVS 337
               G S++  S G      +S+      V   D G+ LH TP+V   G +         
Sbjct: 460 LTSPGVSSALQSLGISSSSLLSTEETIPQVQYEDLGLTLHVTPSVTGRGNVA-LKLDLKL 518

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           + + G +   +P    R+      +  G + ++   +   +     GIP LS++P  G  
Sbjct: 519 DTLEGQSLNSIPVLNDRELTAITTVKPGSSAMIMSSMSQQLSNAVTGIPGLSELPGFGNA 578

Query: 398 FRNSRFNREETEIFIAATPFLVKPVAMRD 426
             NS  ++  + + I  TP +V+ V   +
Sbjct: 579 -TNSDASKNISRLVIVVTPRIVRRVHAEE 606


>gi|83859353|ref|ZP_00952874.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852800|gb|EAP90653.1| hypothetical protein OA2633_13150 [Oceanicaulis alexandrii
           HTCC2633]
          Length = 146

 Score = 69.0 bits (167), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 52/97 (53%)

Query: 33  NAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGK 92
            AA++    + + + ++  +  ++  ++++P D   V+V +P  AD +++  RT+++ GK
Sbjct: 7   AAALVMTLGLGVAQAREFVVTADQAGLIRLPGDASGVIVGNPGIADAMLYDSRTLFVTGK 66

Query: 93  NVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRR 129
             G+ N+I++   G+ +   D+++ +  +      R 
Sbjct: 67  VFGRTNLIVLDEAGRVLYTSDLVVTQPDSQTVQVFRS 103


>gi|227818617|ref|YP_002822588.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
           NGR234]
 gi|36958873|gb|AAQ87298.1| CpaC [Sinorhizobium fredii NGR234]
 gi|227337616|gb|ACP21835.1| PilQ-like protein; component of type IV pilus [Sinorhizobium fredii
           NGR234]
          Length = 172

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/126 (15%), Positives = 49/126 (38%), Gaps = 3/126 (2%)

Query: 1   MRYLQRTFF--TMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKV 57
           MR + R      + + +L  +  +       + A       +     + + +  + ++  
Sbjct: 1   MRVVPRHVVPGHIGAGWLVPALLACTLFGAAQAAEDRPPTTALEPTRQTEGVVRVIVDFA 60

Query: 58  IILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
             L +      +++ +PT A   +   +T+ L GK  G  N+I++   G ++ N+ + + 
Sbjct: 61  RPLILARPASTLIIGNPTIAQATLSDDKTVILTGKTPGSTNLIVMDAAGAEVANIILDVA 120

Query: 118 RDIAHL 123
                L
Sbjct: 121 AAGGRL 126


>gi|153008055|ref|YP_001369270.1| hypothetical protein Oant_0719 [Ochrobactrum anthropi ATCC 49188]
 gi|151559943|gb|ABS13441.1| conserved hypothetical protein [Ochrobactrum anthropi ATCC 49188]
          Length = 139

 Score = 68.2 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 53/127 (41%), Gaps = 11/127 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           + R  F +    + S+                      +       I++  ++  IL++ 
Sbjct: 1   MTRRLFALGGFGMVSAMGLAFMTVFAA-----------IPASAEDYIALETSQARILRLA 49

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
                V++ +P+ AD VV   +T+ L GK+ G  N++++   G+ +L+ ++++ R+    
Sbjct: 50  RPADSVVIGNPSIADAVVQDAQTIVLTGKDFGVTNIVVMDKQGEPILDRELVVSRNARGT 109

Query: 124 EMTLRRF 130
               R+ 
Sbjct: 110 TRIYRQA 116


>gi|110632963|ref|YP_673171.1| hypothetical protein Meso_0606 [Mesorhizobium sp. BNC1]
 gi|110283947|gb|ABG62006.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 167

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 43/107 (40%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTK 76
            +    +   P     +  +     V   +   + + ++   +L +      ++V +   
Sbjct: 9   LALAVLLVTPPAEAGGDPLLAVEQTVAYERAGAVRLTIDFAELLVLDEPASTIIVGNSAI 68

Query: 77  ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
           A   +   RT+ L G+  G  N+I++  +G+++ NL + +     HL
Sbjct: 69  AAASLTDDRTLILTGRTAGATNLIVLDAEGEEIANLVLEVVAAGNHL 115


>gi|220923688|ref|YP_002498990.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
 gi|219948295|gb|ACL58687.1| hypothetical protein Mnod_3781 [Methylobacterium nodulans ORS 2060]
          Length = 169

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 21/137 (15%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M+  + T   + ++ L S  P++++                        + + +    IL
Sbjct: 1   MKRFRPTLHGVAAVALASLLPAMSQ--------------------AADTLDLTVGHSQIL 40

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           +    V  + + DP  AD    +  T+ + GK +G  N+I +   G ++L   + +    
Sbjct: 41  RPGKAVGTIAIGDPDIADATTAAGGTILVTGKKIGTTNIIALDETGSEVLASTLRVVPID 100

Query: 121 AHLEMTLRRFIADSNIR 137
              + ++        I 
Sbjct: 101 RRPKYSVDVIKGGQRIE 117


>gi|315497470|ref|YP_004086274.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
 gi|315415482|gb|ADU12123.1| hypothetical protein Astex_0428 [Asticcacaulis excentricus CB 48]
          Length = 141

 Score = 67.8 bits (164), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 44/103 (42%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A    +S        KI +  N    + +P     V+V +P  ADV V   RT+Y+ G+ 
Sbjct: 12  ALTALLSAGAAEAASKIVVEKNHSTRVVLPASAGSVIVGNPEVADVTVVDSRTIYIMGRG 71

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNI 136
            G+++V +    G+ + + D+++   +       +     + I
Sbjct: 72  FGRSSVSVTDSAGRNIFDADVMVGTPVEGGVTVYKGLKPSTMI 114


>gi|163757621|ref|ZP_02164710.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
 gi|162285123|gb|EDQ35405.1| putative pilus subunit transmembrane protein [Hoeflea phototrophica
           DFL-43]
          Length = 136

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 47/99 (47%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P   +L       A  +      +     I + ++   IL++   V  V++ +   ADV 
Sbjct: 6   PVRRRLAIAAFGMAIAVLSPLTAVADEDLIRVFMDHARILKLDRTVSKVIIGNAAVADVT 65

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           V  PRT+ L GK+ G  N++++  +G+ +++  IL+  D
Sbjct: 66  VSDPRTIVLTGKSYGTTNLVILDQEGEAIVDERILVSVD 104


>gi|304320642|ref|YP_003854285.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
           HTCC2503]
 gi|303299544|gb|ADM09143.1| hypothetical protein PB2503_05347 [Parvularcula bermudensis
           HTCC2503]
          Length = 178

 Score = 67.5 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 2/156 (1%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A +   +     +  ++ + LN     +    +  ++V +P  ADV V +   + LFGK 
Sbjct: 8   AVIAATALAPTAQAGEMWLTLNDARFHETAKPISSIVVGNPAIADVTVRTKTNIILFGKM 67

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G   + L    G+ +  L + +     ++   L+            V + +   G    
Sbjct: 68  PGATTITLFDARGEVIDRLALKVRNASNNVVT-LQAGENRYTFSCTTVCEQIPAIGDGSN 126

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
              ++ A  ++E       R    ++ S  V+  L 
Sbjct: 127 ESRAELA-SVAEQAQQAVTRASAGDNPSNSVVESLE 161


>gi|23016187|ref|ZP_00055946.1| COG0304: 3-oxoacyl-(acyl-carrier-protein) synthase
           [Magnetospirillum magnetotacticum MS-1]
          Length = 142

 Score = 67.5 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 42/88 (47%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
           +    AA++  +       + + + L   I+L +   V+ V+V +P  ADV V  P ++ 
Sbjct: 5   LPPLLAALVWAAPQAAQASEALELPLGGAIVLPMRGGVRTVVVGNPAIADVSVDGPGSVT 64

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILI 116
           +FGK  G  +++ +   G  +    +++
Sbjct: 65  VFGKGPGATSLVALDAGGGVLAERQVVV 92


>gi|13474655|ref|NP_106224.1| hypothetical protein mll5591 [Mesorhizobium loti MAFF303099]
 gi|14025410|dbj|BAB52010.1| mll5591 [Mesorhizobium loti MAFF303099]
          Length = 129

 Score = 67.1 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 37/87 (42%)

Query: 36  VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVG 95
                         I + +N+  I+++      ++V +P  AD  V    T+ L GK  G
Sbjct: 4   AATSLITPARAAADIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTGKGFG 63

Query: 96  QANVILIGHDGKQMLNLDILIERDIAH 122
             N++++  +G  +++  + + R  A 
Sbjct: 64  VTNLVVLDQEGSPIVDAQVTVVRQAAS 90


>gi|260461953|ref|ZP_05810198.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
 gi|259032200|gb|EEW33466.1| conserved hypothetical protein [Mesorhizobium opportunistum
           WSM2075]
          Length = 141

 Score = 67.1 bits (162), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A         V    G  I + +N+  I+++      ++V +P+ AD  V    T+ L G
Sbjct: 11  AALLAATCLVVPARAGTGIEVTMNQAKIVKLSRPADTIVVGNPSIADASVQDASTIVLTG 70

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           K  G  N++++  +G  +++  + + R  A 
Sbjct: 71  KGFGVTNLVVLDQEGSPIVDAQVTVVRQAAS 101


>gi|300021849|ref|YP_003754460.1| hypothetical protein Hden_0314 [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523670|gb|ADJ22139.1| conserved hypothetical protein [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 170

 Score = 67.1 bits (162), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 38/85 (44%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           A I            + +  ++  +L +P    +V+V +P+ ADV +     + + GK  
Sbjct: 23  AAIVALSAAGASAGDLIVRYDQSQLLHLPRPASEVIVGNPSIADVTLQDGNLLVVTGKTF 82

Query: 95  GQANVILIGHDGKQMLNLDILIERD 119
           G  NVI +      + +  +++ERD
Sbjct: 83  GITNVIALDAAHNVIQDQRVMVERD 107


>gi|190889877|ref|YP_001976419.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
 gi|190695156|gb|ACE89241.1| pilus subunit transmembrane protein [Rhizobium etli CIAT 652]
          Length = 136

 Score = 66.7 bits (161), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122

Query: 154 IQDSQRAVE 162
            Q +Q+A +
Sbjct: 123 EQHAQQAAD 131


>gi|319785612|ref|YP_004145088.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317171500|gb|ADV15038.1| hypothetical protein Mesci_6031 [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 140

 Score = 66.7 bits (161), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 41/91 (45%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A    ++        G  I + +N+  I+++      ++V +P  AD  V    T+ L G
Sbjct: 11  AALLAVSSFVAPAMAGAGIEVTMNQAKIVKLSRPADTIVVGNPAIADASVQDASTIVLTG 70

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           K  G  N++++  DG  +++  + + R  A 
Sbjct: 71  KGFGVTNLVVLDTDGSPIVDEQVTVVRQAAS 101


>gi|218506995|ref|ZP_03504873.1| pilus subunit transmembrane protein [Rhizobium etli Brasil 5]
          Length = 151

 Score = 66.3 bits (160), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122

Query: 154 IQDSQRAVE 162
            Q +Q+A +
Sbjct: 123 EQHAQQAAD 131


>gi|218671456|ref|ZP_03521126.1| pilus subunit transmembrane protein [Rhizobium etli GR56]
          Length = 135

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122

Query: 154 IQDSQRAV 161
            Q +Q+A 
Sbjct: 123 EQHAQQAA 130


>gi|144897438|emb|CAM74302.1| conserved hypothetical protein, secreted [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 138

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 40/88 (45%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
               A ++    V   +   + +G  +   +     V  V++ DP  ADV V S   + L
Sbjct: 4   AFFAAVILTAFAVSSARADTLELGAGQSRRVDAGRGVAQVVIGDPKVADVSVDSAGRIQL 63

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIE 117
           FGK  G  ++ ++G +G  +L+  +++ 
Sbjct: 64  FGKRAGSTSLTVLGRNGAVLLDHTVVVR 91


>gi|295701132|ref|YP_003610133.1| type II secretory pathway component PulD-like protein [Burkholderia
           sp. CCGE1002]
 gi|295441455|gb|ADG20622.1| type II secretory pathway component PulD-like protein [Burkholderia
           sp. CCGE1002]
          Length = 538

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/275 (17%), Positives = 87/275 (31%), Gaps = 38/275 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A     K++   N     QV L+V   ++  +   Q G    +  +         +
Sbjct: 271 DTREAADRMGKLLAQENAVSTRQVMLRVRTLQIALNNGSQAGVNADVVFNYIQGGLARYA 330

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        S GG   +  +     F     V++AL +       +  T   ++G   S
Sbjct: 331 VSFTSPTSLSSGGGTVGLSVLQANAPFSGTNAVINALNQYGRTVQDSTQTKMTLNGLPVS 390

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  S+   T+ +    G+          ++  P V    +I L    +
Sbjct: 391 IASFQSDDYLRSTSPSAGSLTATSGGVPGLTPGTVTTGDFVNILPAVNDHNQIILSYWAD 450

Query: 336 VSEPVIGVNAGDMPSYRV-----------RKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            S+      +  + S +             K D T+ L  G T+VL G + D        
Sbjct: 451 SSKLNGPFTSASVGSGQTLQQIQLAHTTGSKEDQTIALSDGQTVVLYGQMTDLANSTTN- 509

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                 I  +  L     +N+ +T   I  T  +V
Sbjct: 510 ----GGIAGITGL-----WNKSKTFQVIMLTATVV 535


>gi|327194698|gb|EGE61544.1| pilus subunit transmembrane protein [Rhizobium etli CNPAF512]
          Length = 136

 Score = 66.3 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGVSGISTAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122

Query: 154 IQDSQRAVE 162
            Q +Q+A +
Sbjct: 123 EQHAQQAAD 131


>gi|209551755|ref|YP_002283672.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537511|gb|ACI57446.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 136

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGVSGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 122

Query: 154 IQDSQRAV 161
            Q +Q+A 
Sbjct: 123 EQHAQQAA 130


>gi|254225078|ref|ZP_04918692.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V51]
 gi|125622465|gb|EAZ50785.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V51]
          Length = 489

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 81/274 (29%), Gaps = 26/274 (9%)

Query: 140 MVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQ-----------YANSSSKKVM--- 185
               +  L G   T  +S    ++ E   +  G                 +   K +   
Sbjct: 183 TSGTSSGLKGTADTAIESNSWEKIDEFLSASLGETGKFTIFEDYSLVTVKARPDKFLLLH 242

Query: 186 ---NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
              + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        G
Sbjct: 243 TFFDKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVG 301

Query: 243 GDFSVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
           G             + V++ L +        +  P        + +            ++
Sbjct: 302 GGLGASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTN 361

Query: 301 STGATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRK 355
           +   T    V+    G  +   P +L  GRI +       + V         +P+    +
Sbjct: 362 TDEETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENE 421

Query: 356 ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           +  TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 422 SMNTVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|48411|emb|CAA45458.1| tcpC (lipoprotein) [Vibrio cholerae]
 gi|383775|prf||1904214A outer membrane lipoprotein
          Length = 489

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      + V++ L +        +  P        + +            +++  
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364

Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|90419761|ref|ZP_01227670.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335802|gb|EAS49550.1| possible pilus assembly protein (CpaC) [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 157

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 18/134 (13%), Positives = 52/134 (38%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
              +     + + ++   I+Q+      V+V +P   DV V S   + L G++ G  N++
Sbjct: 24  AAAVDSRDVLPVEVDHARIVQIDNPAATVIVGNPAIVDVEVLSSNRLVLTGRSYGITNLV 83

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRA 160
           ++  +G  +++  + ++    +     R+    +         TV +   V +  ++ + 
Sbjct: 84  ILDANGDIVMDQQVAVQSFEDNTVRVYRQASRVTYACAPKCEPTVTIGDNVDSFGEAAQQ 143

Query: 161 VELSETFLSQSGRN 174
               +     + + 
Sbjct: 144 YAQRQGMAMDAAKQ 157


>gi|147675545|ref|YP_001216312.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|262168740|ref|ZP_06036435.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC27]
 gi|13377522|gb|AAK20758.1|AF325733_14 toxin-coregulated pilus biosynthesis outer membrane protein C
           (lipoprotein) [Vibrio cholerae]
 gi|146317428|gb|ABQ21967.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|227012652|gb|ACP08862.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O395]
 gi|262022858|gb|EEY41564.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC27]
          Length = 489

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      + V++ L +        +  P        + +            +++  
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364

Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|62959541|gb|AAY23728.1| hydroxylamine oxidase [Acinetobacter sp. YY-5]
          Length = 149

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 7/118 (5%)

Query: 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-------TG 303
             R ++  ++ AL+  T    L+ P++  +  + A    G    + T S +         
Sbjct: 26  NSRKAYGALIQALKANTKSNLLSTPSIVTMDNEEAYIVVGQNVPFVTGSVATQGNSTVNP 85

Query: 304 ATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
            T+V   D GV L   P +   G + L ++ EVS                R   T+V 
Sbjct: 86  YTTVERKDVGVTLKVVPHIGEGGSVRLEVEQEVSAVQESRGQATDLVTSKRAIKTSVL 143


>gi|153818067|ref|ZP_01970734.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae NCTC 8457]
 gi|126511413|gb|EAZ74007.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae NCTC 8457]
          Length = 489

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      + V++ L +        +  P        + +            +++  
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364

Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|218461610|ref|ZP_03501701.1| pilus subunit transmembrane protein [Rhizobium etli Kim 5]
          Length = 124

 Score = 65.9 bits (159), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 3   AVFGVSGISAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAKVADATVADAKTIVLTGRS 62

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   ++  VL      
Sbjct: 63  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTERSVLSCTPNC 110

Query: 154 IQDSQRAV 161
            Q +Q+A 
Sbjct: 111 EQHAQQAA 118


>gi|296444401|ref|ZP_06886366.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
 gi|296258048|gb|EFH05110.1| conserved hypothetical protein [Methylosinus trichosporium OB3b]
          Length = 155

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 44/90 (48%), Gaps = 1/90 (1%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY-LFGKN 93
           AV+  +     + + + + +++  ++++P   Q +++ +P  ADV +     +  + GK+
Sbjct: 17  AVMGATSRSFAEQRALYVDIDRARVVRMPDGAQTIIIGNPLVADVTMLKANRLLVVTGKS 76

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHL 123
            G  N+IL+   G +++   I +      L
Sbjct: 77  FGTTNLILLDESGGEVVEQTITVTPASDKL 106


>gi|258620016|ref|ZP_05715056.1| Toxin coregulated pilus biosynthesis outer membrane protein C
           [Vibrio mimicus VM573]
 gi|258587749|gb|EEW12458.1| Toxin coregulated pilus biosynthesis outer membrane protein C
           [Vibrio mimicus VM573]
          Length = 489

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      + V++ L +        +  P        + +            +++  
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364

Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|15640848|ref|NP_230479.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121585745|ref|ZP_01675540.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae 2740-80]
 gi|153822050|ref|ZP_01974717.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae B33]
 gi|227081008|ref|YP_002809559.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae M66-2]
 gi|229505558|ref|ZP_04395068.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
           330286]
 gi|229510771|ref|ZP_04400250.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           B33]
 gi|229517892|ref|ZP_04407336.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC9]
 gi|229608577|ref|YP_002879225.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           MJ-1236]
 gi|254847967|ref|ZP_05237317.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MO10]
 gi|255744631|ref|ZP_05418582.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
           CIRS 101]
 gi|262161237|ref|ZP_06030348.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           INDRE 91/1]
 gi|298499040|ref|ZP_07008847.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MAK 757]
 gi|14548352|sp|P29481|TCPC_VIBCH RecName: Full=Toxin coregulated pilus biosynthesis outer membrane
           protein C; AltName: Full=TCP pilus biosynthesis protein
           tcpC; Flags: Precursor
 gi|13377553|gb|AAK20788.1|AF325734_14 toxin-coregulated pilus biosynthesis outer membrane protein C
           (lipoprotein) [Vibrio cholerae]
 gi|9655282|gb|AAF93994.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121550108|gb|EAX60124.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae 2740-80]
 gi|126520444|gb|EAZ77667.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae B33]
 gi|227008896|gb|ACP05108.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae M66-2]
 gi|229344607|gb|EEO09581.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           RC9]
 gi|229350736|gb|EEO15677.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           B33]
 gi|229357781|gb|EEO22698.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae BX
           330286]
 gi|229371232|gb|ACQ61655.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           MJ-1236]
 gi|254843672|gb|EET22086.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MO10]
 gi|255737662|gb|EET93056.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholera
           CIRS 101]
 gi|262028987|gb|EEY47640.1| toxin co-regulated pilus biosynthesis protein C [Vibrio cholerae
           INDRE 91/1]
 gi|297543373|gb|EFH79423.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae MAK 757]
          Length = 489

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 67/211 (31%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 246 DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 304

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
                      + V++ L +        +  P        + +            +++  
Sbjct: 305 GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 364

Query: 304 ATS---VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 365 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 424

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 425 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 454


>gi|167583028|ref|ZP_02375902.1| putative bacteriophage-related lipoprotein [Burkholderia
           thailandensis TXDOH]
          Length = 101

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 45/103 (43%), Gaps = 8/103 (7%)

Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVSEPVIG-VNAGDMPSYRVRKADTTVELPSGGTIVLA 371
           G++    PTV+    I L+++ E+S+ V         P+   R+  T   L  G  +VL 
Sbjct: 1   GLIFDVEPTVMRD-VIELKVREEISDFVATKTGVDTSPTKNTRQLQTVTRLKDGELVVLG 59

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           GL++D     + G   L   P   + F     +++ TE+ +  
Sbjct: 60  GLIQDRDATARSGYSWL---P---SFFDGRSSSKQRTEVLLVL 96


>gi|171315562|ref|ZP_02904798.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
 gi|171099399|gb|EDT44137.1| putative bacteriophage-related lipoprotein [Burkholderia ambifaria
           MEX-5]
          Length = 142

 Score = 65.5 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 55/141 (39%), Gaps = 13/141 (9%)

Query: 280 ISGQSASFTSGGQHLY-----KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
           +SGQS     G Q            S T   SV   D G++    PTV++   I +++  
Sbjct: 1   MSGQSVRLNVGSQVPTLGSISYQGPSGTPVQSVQYQDAGLIFDVQPTVMAD-SIQVKLNE 59

Query: 335 EVSEPVIGVNA-GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPI 393
           E+S  V       + P+   R+  TTV L  G  +VL GL++D   +     P       
Sbjct: 60  EMSSFVATSTGVNNSPTKNTRQMATTVNLKDGEVVVLGGLVQDTDTRSTNS-PG-----W 113

Query: 394 LGALFRNSRFNREETEIFIAA 414
           L         ++  TE+ +  
Sbjct: 114 LPKFLDGHSASKGRTEVLLVL 134


>gi|254513594|ref|ZP_05125658.1| Bacterial type II and III secretion system protein
           [Rhodobacteraceae bacterium KLH11]
 gi|221532103|gb|EEE35100.1| Bacterial type II and III secretion system protein
           [Rhodobacteraceae bacterium KLH11]
          Length = 499

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 14/230 (6%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + V   +  +     +G + S T  +   +       G   ++          L + S
Sbjct: 271 IEVAVFFIDTSKTDTFAVGLEGSGTHGAISGAVGALTGSGVATLTNDFGSINFQALAKNS 330

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
                          T+A   L A+      + S          ++T      T D G+ 
Sbjct: 331 SVVDYRLASTIAQSGTIAPIALPALVN----YVSSIGETKNEDGTTTTTVETDTIDTGIS 386

Query: 316 LHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIV 369
           +H  P ++   RI L +       TE+ +   G     +P    R       L  G T++
Sbjct: 387 IHALPRLVRDNRIQLSLTLVQNDLTELEDFDTGDGTVQLPKIDQRAIQNDSLLAPGETLI 446

Query: 370 LAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           L+G  +D   +   G         +G L    +    +  + +   P ++
Sbjct: 447 LSGYEQDKATRSNTGT---GIAKFIG-LGGRIKGEVGKVRMVVFVRPAII 492


>gi|110636420|ref|YP_676628.1| hypothetical protein Meso_4096 [Mesorhizobium sp. BNC1]
 gi|110287404|gb|ABG65463.1| conserved hypothetical protein [Chelativorans sp. BNC1]
          Length = 137

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 42/91 (46%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYL 89
               A ++  +         I I +N+  I+++      V++ +P  AD VV   +T+ L
Sbjct: 8   ALFFAIMLAAAIAGAEARADIGIVMNQAKIIKLVRPADTVVIGNPEIADAVVQDAQTIVL 67

Query: 90  FGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            GK  G  N++ +  +G+ +++  + + R  
Sbjct: 68  TGKGFGVTNIVALDVEGRPIMDEQVRVSRQT 98


>gi|289827429|ref|ZP_06546041.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
          Length = 389

 Score = 65.1 bits (157), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 12/142 (8%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 235 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 286

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 287 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 342

Query: 274 EPTLTAISGQSASFTSGGQHLY 295
           +P++  ++   A          
Sbjct: 343 QPSVVTLNNIQAVLDKNITFYT 364


>gi|15963890|ref|NP_384243.1| hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|307315787|ref|ZP_07595301.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
 gi|307320422|ref|ZP_07599839.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|15073065|emb|CAC41524.1| Hypothetical protein SMc04115 [Sinorhizobium meliloti 1021]
 gi|306893988|gb|EFN24757.1| conserved hypothetical protein [Sinorhizobium meliloti AK83]
 gi|306898555|gb|EFN29228.1| conserved hypothetical protein [Sinorhizobium meliloti BL225C]
          Length = 138

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 20  NPSVAKLPPIKEANAAVINISDVEIGKGKKI-SIGLNKVIILQVPVDVQDVLVSDPTKAD 78
            PS A    +    A +   +       +++  + ++   +L++   V  V++ +   AD
Sbjct: 3   MPSAAPRAALLATTALLAIAAPGGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNAEVAD 62

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
             V   +T+ L G+N G  N++++  DG  M++  IL+  D
Sbjct: 63  ATVADAKTIVLTGRNFGTTNLVILDQDGNAMVDERILVSID 103


>gi|328545283|ref|YP_004305392.1| Possible pilus assembly protein (CpaC) [polymorphum gilvum
           SL003B-26A1]
 gi|326415025|gb|ADZ72088.1| Possible pilus assembly protein (CpaC) [Polymorphum gilvum
           SL003B-26A1]
          Length = 157

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 43/89 (48%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
               + + +++ +++  + ++      V+V +P+ ADV +H   T+ + GK  G  N+++
Sbjct: 23  AAAAETEPVAVTVDRAKVFRIEAPADTVIVGNPSIADVTMHDRFTVVVTGKTFGTTNLVI 82

Query: 102 IGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +  D + +++  I++      +    R  
Sbjct: 83  LDKDSQPIIDEVIVVRPPETDVVTVTRNL 111


>gi|330984052|gb|EGH82155.1| hypothetical protein PLA107_03384 [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 512

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/201 (14%), Positives = 66/201 (32%), Gaps = 28/201 (13%)

Query: 241 EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS 300
                 +      FSF +  + L      +T    ++  ISG+  +  SG +  Y     
Sbjct: 306 SSKGLELNIAAGDFSFLSAFNLLSTYGETKTTQSVSMDTISGEEVAIKSGQKIPYIDSIG 365

Query: 301 ST--------------GATSVTTHDYGVVLHFTPTVLSPGR-IGLRIQTEVSEP------ 339
                           G+T V   D G+ L   P   +  + + + +  ++S        
Sbjct: 366 VNSNNNNGYNNSSNSLGSTDVKDVDIGLELKLKPYYDNRSKLVSIGVDLKLSSLLRFVEL 425

Query: 340 --VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
                +     P  + +     V++ +G ++++ GL+ D +   +  + +L         
Sbjct: 426 SAGNQIGTLTRPQTQEQSFTDNVKVRAGESMIIGGLMYDQLSDNRSNLAMLDD-----YK 480

Query: 398 FRNSRFNREETEIFIAATPFL 418
             +       T +FI   P +
Sbjct: 481 TASKSAKVTRTAMFILIRPTV 501


>gi|295690803|ref|YP_003594496.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
 gi|295432706|gb|ADG11878.1| CpaC-related secretion pathway protein [Caulobacter segnis ATCC
           21756]
          Length = 132

 Score = 64.8 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 41/80 (51%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           N+      +   + +   + I L +   ++DV+V DP  ADV + + RT+ + GK  G  
Sbjct: 16  NVDAAAQSRPAALPLATGQAISLSLGGAMRDVVVGDPEVADVSIVNERTLVVLGKRPGVT 75

Query: 98  NVILIGHDGKQMLNLDILIE 117
           N+++ G  G+ + +  +++ 
Sbjct: 76  NLLVFGAGGRALTDRQLIVS 95


>gi|227823967|ref|YP_002827940.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
 gi|227342969|gb|ACP27187.1| component of type IV pilus PilQ1 [Sinorhizobium fredii NGR234]
          Length = 141

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 46/102 (45%), Gaps = 3/102 (2%)

Query: 21  PSVAKLPPIKEANAAVIN---ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
           P   K        AA +     ++      + + + ++   +L++   V  V++ +   A
Sbjct: 4   PLATKPVATLAFLAATLFGFFAAEKTDAAEQMMRVYMDHARVLKLDRPVSKVIIGNSDVA 63

Query: 78  DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           D  V   +T+ L G+N G  N++++  DG  +++  IL+  D
Sbjct: 64  DATVADSKTIVLTGRNFGTTNLVILDQDGNAIVDERILVSID 105


>gi|331650722|ref|ZP_08351760.1| bacterial type II and III secretion system domain protein
           [Escherichia coli M605]
 gi|331040432|gb|EGI12624.1| bacterial type II and III secretion system domain protein
           [Escherichia coli M605]
          Length = 127

 Score = 64.4 bits (155), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 9/125 (7%)

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA-GDMPSYRVR 354
               ++    SVT  + G +    P  +    I L I+ ++S  V       D P+   R
Sbjct: 10  SYQDNNRPVQSVTYRNSGAIFTVKP-FIYDDVINLDIEQQLSNFVKTTTGVNDSPTLIKR 68

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
              T V +  G  IVL GL      +      LL   P+    F     + ++T+I +  
Sbjct: 69  DIRTQVSVRDGEIIVLGGLASSKTTETNTAFSLL---PV----FSGHASDSDKTDIIVVL 121

Query: 415 TPFLV 419
               V
Sbjct: 122 QARRV 126


>gi|222084464|ref|YP_002542993.1| hypothetical protein Arad_0357 [Agrobacterium radiobacter K84]
 gi|221721912|gb|ACM25068.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 139

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 42/88 (47%)

Query: 32  ANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFG 91
           A  A +            + + ++   +L++   V  V+V +   AD  V  P+T+ L G
Sbjct: 14  AAMAGLMPQLSRAADDGMLRVYMDHARVLKLDRPVSKVIVGNAQVADATVADPKTIVLTG 73

Query: 92  KNVGQANVILIGHDGKQMLNLDILIERD 119
           ++ G  N++L+  DG  +++  IL+  D
Sbjct: 74  RSFGTTNIVLLDADGNAIVDERILVSID 101


>gi|302381761|ref|YP_003817584.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302192389|gb|ADK99960.1| CpaC-related secretion pathway protein [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 139

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 41/97 (42%)

Query: 26  LPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPR 85
                   A V  +    + + + +++G+++   + +      V+V +P  ADV V    
Sbjct: 9   AARSAAVLAGVTCLFAAGMAQAQSLNVGIDRSARVALRGSAASVIVGNPAIADVTVVDAN 68

Query: 86  TMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           T+++ GK  G   VI +   G+ +   ++++      
Sbjct: 69  TLFVTGKGYGVTEVIAVDGLGRTIYQGEVIVSGGSTG 105


>gi|154250684|ref|YP_001411508.1| hypothetical protein Plav_0228 [Parvibaculum lavamentivorans DS-1]
 gi|154154634|gb|ABS61851.1| conserved hypothetical protein [Parvibaculum lavamentivorans DS-1]
          Length = 172

 Score = 64.0 bits (154), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 44/100 (44%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
              A  A      V   +     + +NK   L +      V+V +P+ ADV V   + +Y
Sbjct: 15  YTAAIGAACAGLAVSASQAADFQVEMNKSKALHLGQPASTVMVGNPSIADVTVEGSKLLY 74

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR 128
           + G++ G+ N+I +   G+ +L++++ +    A      R
Sbjct: 75  VMGRSYGRTNIIALDSSGETILDINVNVVSQSASTVTLTR 114


>gi|85713500|ref|ZP_01044490.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
 gi|85699404|gb|EAQ37271.1| hypothetical protein NB311A_03149 [Nitrobacter sp. Nb-311A]
          Length = 163

 Score = 64.0 bits (154), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
            +  S+   S    +   P    A               + IS+ +++  ++++P  +  
Sbjct: 9   PSRASVIGMSLAAVMLLGPVAAPAEV-----------TSEPISVNVDQAKLVRLPGHIAT 57

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++V +P  ADV +     + + GK  G  NVI +   G  +++  I +E     +  
Sbjct: 58  IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114


>gi|329917057|ref|ZP_08276428.1| type II and III secretion system protein [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327544637|gb|EGF30102.1| type II and III secretion system protein [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 537

 Score = 63.6 bits (153), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/258 (16%), Positives = 75/258 (29%), Gaps = 47/258 (18%)

Query: 199 KVTIAEVRRDILKQIGFQHS--ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR--- 253
            V I +V        G Q +      + G + + A+             +          
Sbjct: 231 DVNIFQVDLKDNSDTGIQWNKLAWAGTPGLAANPASTATTAVTPAVAGTTAATTAATNIG 290

Query: 254 --------------------FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH 293
                               FS + +++ L+    ++ ++ P L  ISG   S   G   
Sbjct: 291 NAVSGGIAGLGLGLVLSSSRFSVDMLINFLQTQGNVKAISRPRLAVISGTKGSLRVGQST 350

Query: 294 LYKTVSSSTGATSVTTH-------DYGVVLHFTPTVLSPG---RIGLRIQTEVS--EPVI 341
            Y +   +  +TSV            G+ L             RIGL I   VS  +   
Sbjct: 351 TYVSKVGTNFSTSVNQVTTETRDLKTGLDLALFGDFSDNTVYTRIGLSISEIVSLNKFTA 410

Query: 342 GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401
                 +P+   R+ +T +    G  I+L G+  +                  G     S
Sbjct: 411 LGTDLTLPTTADREINTVIRARPGDMILLGGITINRDASDIRR----------GVTQNGS 460

Query: 402 RFNREETEIFIAATPFLV 419
                 +E+ +A    +V
Sbjct: 461 SDTVTRSELVLALKSKVV 478


>gi|153842373|ref|ZP_01993497.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase) [Vibrio parahaemolyticus AQ3810]
 gi|149745386|gb|EDM56637.1| 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
           (CMK)(4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol
           kinase) [Vibrio parahaemolyticus AQ3810]
          Length = 356

 Score = 63.6 bits (153), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/209 (10%), Positives = 58/209 (27%), Gaps = 35/209 (16%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 59  KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 117

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 118 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGDG 177

Query: 232 ---------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
                            +    F V  +      +  L AL++ +    ++ P L   + 
Sbjct: 178 VGIDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNK 237

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHD 311
           + A    G +  Y   SSS          
Sbjct: 238 KPAYIEQGTEIPYLESSSSGATALQNYAH 266


>gi|308094756|ref|ZP_07663037.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
 gi|308089670|gb|EFO39365.1| fimbrial assembly protein PilQ [Vibrio parahaemolyticus AN-5034]
          Length = 449

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 22/203 (10%), Positives = 59/203 (29%), Gaps = 33/203 (16%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T            +  ++++  L+I  + QV
Sbjct: 243 KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIAVIREIIESLDIPVK-QV 301

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFA------------------------- 231
            ++  I  +    + ++G +   T  +   +   +                         
Sbjct: 302 QIEARIVTISEGNMDELGIRWGFTSINGNNTVGGSIENNLATIGLYEGGGDGEGEEGGVG 361

Query: 232 -------ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQS 284
                          +    F V  +      +  L AL++ +    ++ P L   + + 
Sbjct: 362 IDDFLNVNLAATNPNAASIAFQVAKLGSDTLLDLELSALQQESKAEIISSPRLITTNKKP 421

Query: 285 ASFTSGGQHLYKTVSSSTGATSV 307
           A    G +  Y   SSS   +  
Sbjct: 422 AYIEQGTEIPYLESSSSGATSVT 444


>gi|99035082|ref|ZP_01314871.1| hypothetical protein Wendoof_01000288 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 413

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 19/179 (10%)

Query: 179 SSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
            + ++ +N +      QV ++  I EV  D     G   +                    
Sbjct: 235 KAVEEYINKVKKLASSQVMIEAKIVEVVLDDKYLSGMNLN----------DLQDGTKSII 284

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY--- 295
             +    ++           ++  L++      ++ P + AI+ Q A  +    H+Y   
Sbjct: 285 NQDNSIINLAMNFGANDLGDLVKNLDKFGTSTVISSPRVHAINNQQAMISFTKNHIYFTS 344

Query: 296 -----KTVSSSTGATSVTTHDYGVVLHFTPTVLSP-GRIGLRIQTEVSEPVIGVNAGDM 348
                   S+ T  T + +   GVVL   P++      I + I   +S         D+
Sbjct: 345 DIQKDTRNSNQTLITKMNSVPIGVVLIIHPSINIDTSEIFMDIHPTLSRINGYTKDPDI 403


>gi|159184220|ref|NP_353258.2| hypothetical protein Atu0226 [Agrobacterium tumefaciens str. C58]
 gi|159139548|gb|AAK86043.2| PilQ [Agrobacterium tumefaciens str. C58]
          Length = 127

 Score = 63.2 bits (152), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N   +L++   V  V+V +   AD  V    T+ L G++ G  N++L+  +G  +
Sbjct: 22  LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 81

Query: 110 LNLDILIERD 119
           ++  IL+  D
Sbjct: 82  VDERILVSID 91


>gi|325291663|ref|YP_004277527.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
 gi|325059516|gb|ADY63207.1| hypothetical protein AGROH133_03290 [Agrobacterium sp. H13-3]
          Length = 136

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 37/70 (52%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           + + +N   +L++   V  V+V +   AD  V    T+ L G++ G  N++L+  +G  +
Sbjct: 31  LRVSMNHARVLRLDRPVSKVIVGNSKVADATVADATTIVLTGRSFGTTNLVLLDAEGNPI 90

Query: 110 LNLDILIERD 119
           ++  IL+  D
Sbjct: 91  VDERILVSID 100


>gi|281356847|ref|ZP_06243337.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316405|gb|EFB00429.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 478

 Score = 62.8 bits (151), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/272 (15%), Positives = 79/272 (29%), Gaps = 51/272 (18%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG------PSKSFAADFGGKFVSEGGD 244
               Q+T   T+ EVR   L+ IG ++    +  G         +F    GG    +   
Sbjct: 188 RPAPQITFNFTLYEVRESTLRDIGIEYLAWKNGPGLNIFSVGWDAFGLTSGGTAAMQAMS 247

Query: 245 FSVKGVLDRFSFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
             + G L    F+   +  L+++         ++T  +    S T   +  +     +  
Sbjct: 248 GPLGGFLFAPQFDASFIRLLQQSGKAEIKNSASITVSN----SDTQSSELYFNPQFENIT 303

Query: 304 ATSVTTHDYGV-VLHFTPTVLS------PGRIGLRIQTEVSE------------------ 338
            +       GV  L  TP +           + L                          
Sbjct: 304 KSDNDKTSVGVGTLGLTPGLNQLYLKIIQPIVNLHYGLPQDGYPAAEEFSMNVYKPGAYA 363

Query: 339 ---------------PVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                           V+  N          +      +      +LA   +D   +   
Sbjct: 364 KYPGTVFFGYDVQAANVVERNNVGAELVETSQIVGNTLIQLNHETILAEWNRDQEVEQTI 423

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           G+P L  IPIL  LF  +  + E+T  +++ T
Sbjct: 424 GVPFLMDIPILKYLFSTTTTSTEKTRFYLSVT 455


>gi|241589623|ref|YP_002979648.1| hypothetical protein Rpic12D_4759 [Ralstonia pickettii 12D]
 gi|240868335|gb|ACS65994.1| conserved hypothetical protein [Ralstonia pickettii 12D]
          Length = 596

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/316 (13%), Positives = 91/316 (28%), Gaps = 39/316 (12%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSS---SKKVMNLLN 189
           D+ I+ E  + + V            RA  +S      S        +   + +++    
Sbjct: 277 DAPIKSEATNISEVESVKSSIGTIMTRAGSISADPALGSITLTDTKEAVDKADEIVKFST 336

Query: 190 IAGEDQVTLKVTIAEVRRDILKQIGFQHSIT----------GSSSGPSKSFAADFGGKFV 239
                 V +++ + +V      Q     +               S  S        G   
Sbjct: 337 SVLSKMVLVRLQLIQVTTKDNGQAAVNWNAVMTKALEHIPGFQLSSISPVSLIGQSGGLN 396

Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS 299
           + G              + ++ ALE    + T  E  L+  +     +     + Y + +
Sbjct: 397 NSGSIGLNITSGGFTGTQAIVQALEELGRVSTTTEIPLSIQNRHGMYYNVRQTYSYVSGT 456

Query: 300 SST----------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------- 341
           +               +      G  L   P+V S G I + +  + S            
Sbjct: 457 TPATATAGGTGGVPGITTAQDQVGFKLMIYPSVTSRGSINMTVSIDQSTLQGLDKFTSGS 516

Query: 342 --GVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398
                   +P+     A     + +GGT++L G  +   Q  + G+ P    +P++    
Sbjct: 517 GANQQTVQLPNTNGEGATIDAIVNNGGTLILTGFEQKQNQFDRRGLAP---DVPLIAG-- 571

Query: 399 RNSRFNREETEIFIAA 414
            +   + + T   I  
Sbjct: 572 GSKAASTQRTTTIIIL 587


>gi|301167753|emb|CBW27337.1| conserved hypothetical protein [Bacteriovorax marinus SJ]
          Length = 459

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/185 (20%), Positives = 69/185 (37%), Gaps = 6/185 (3%)

Query: 226 PSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSA 285
            + S     G   +S      ++  L+ F  E +++   +   + ++A P +        
Sbjct: 271 SASSEVLALGLDKISNNLYALIRNDLNSFIGENIINFENKRVKLSSIATPEIITRVNNEG 330

Query: 286 SFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNA 345
             + G +  +   S     T+      G+ +  T          L I+TE+S P+    A
Sbjct: 331 EISIGSEIPFTRKSKEEYVTN--WKFAGLKIK-TKLEKENNEYFLNIETELSRPMQSSGA 387

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNR 405
                    K  + V++  G ++ +  +    IQ     +P LSKIP+LG LF +S    
Sbjct: 388 ST---ISSNKTKSRVKITQGKSLKITDIGHQGIQHQNTSLPYLSKIPLLGKLFTSSSEIE 444

Query: 406 EETEI 410
               I
Sbjct: 445 TYKNI 449


>gi|254293210|ref|YP_003059233.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
 gi|254041741|gb|ACT58536.1| hypothetical protein Hbal_0842 [Hirschia baltica ATCC 49814]
          Length = 166

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 41/89 (46%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                +  +I + +++  +L +   +  ++V +P  A V VH   T+ L G + G  N+I
Sbjct: 58  AANPAQENEIDVYIDQTQLLHLGTPMGSIIVGNPDVATVAVHDNHTLLLTGLSFGTTNLI 117

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR 129
           ++   G+ +    +++        +T+ R
Sbjct: 118 VLDSVGRPIHKSQLMVSERTGSGTLTVAR 146


>gi|149177451|ref|ZP_01856055.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
 gi|148843784|gb|EDL58143.1| hypothetical protein PM8797T_19156 [Planctomyces maris DSM 8797]
          Length = 1668

 Score = 62.5 bits (150), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 34/57 (59%)

Query: 363  PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
            P GGT++L G+ +    +   G+P+L+K+P +  LF+N+   RE   + +  TP ++
Sbjct: 1600 PDGGTVLLGGVKRLREGRSMAGVPILNKLPYVSRLFKNTGVGRETESLMMMVTPRII 1656


>gi|329891000|ref|ZP_08269343.1| pilQ [Brevundimonas diminuta ATCC 11568]
 gi|328846301|gb|EGF95865.1| pilQ [Brevundimonas diminuta ATCC 11568]
          Length = 129

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 46/99 (46%)

Query: 24  AKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHS 83
            +   +    AA++ ++   + + + + + L++   +Q+      V+V++P  ADV V  
Sbjct: 1   MRPASLLTGLAALLVLTAPAVAQERPLDVKLDQATRVQLRAPAGSVIVANPRIADVTVTD 60

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            RT+++ GK+ G   +I +   G+ +    + +      
Sbjct: 61  ARTLFITGKSYGLTEIIAVDALGRPLFQRQVAVSPGETG 99


>gi|299531109|ref|ZP_07044522.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
 gi|298721066|gb|EFI62010.1| hypothetical protein CTS44_09997 [Comamonas testosteroni S44]
          Length = 596

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/329 (16%), Positives = 103/329 (31%), Gaps = 51/329 (15%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186
            SN R++      + +  + ++Q    AV  S   ++Q        ++ +      +V+ 
Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFV------- 239
             N +   QV +++ I  +      + G    +  +S         D     V       
Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQI 393

Query: 240 -------SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                  + GG  S   V      +  + AL             + A++ Q A  T+   
Sbjct: 394 GLTILSLANGGSPSSGTVGRWGGTQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453

Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             Y + +         S +          G      P +L  G + LR    ++  V   
Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513

Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389
                    + +            +TV L +G  +VL G+ +    D+ ++L EG  LL+
Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
                     +   + E  E  +   P L
Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594


>gi|75674503|ref|YP_316924.1| hypothetical protein Nwi_0305 [Nitrobacter winogradskyi Nb-255]
 gi|74419373|gb|ABA03572.1| conserved hypothetical protein [Nitrobacter winogradskyi Nb-255]
          Length = 163

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 50/123 (40%), Gaps = 14/123 (11%)

Query: 3   YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQV 62
              R+  +++ +   ++    A   P +                 + IS+ +++  ++++
Sbjct: 6   VRGRSRVSVIGVSFAAAILLGAATAPAE--------------VISEPISVNVDQAKLVRL 51

Query: 63  PVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
           P  +  ++V +P  ADV +     + + GK  G  N+I +   G  M++  I +E     
Sbjct: 52  PGPIATIVVGNPLIADVTLQPGGLVVVTGKGYGATNMIAMDRAGSIMVDRVIQVEGPSDQ 111

Query: 123 LEM 125
           +  
Sbjct: 112 VVT 114


>gi|153930563|ref|YP_001393255.1| PilN family type IV pilus biogenesis protein [Yersinia
           pseudotuberculosis IP 31758]
 gi|152958107|gb|ABS45570.1| type IV pilus/secretion system protein, PilN family [Yersinia
           pseudotuberculosis IP 31758]
          Length = 568

 Score = 62.5 bits (150), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/256 (15%), Positives = 80/256 (31%), Gaps = 37/256 (14%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFVSEGGDFSVKGV 250
             QV  KV I  +  ++   +G    I   S       + A+  G       G F +   
Sbjct: 319 SKQVLFKVVIYTITSEVSDNVGIDWDIIFKSLSGKYGINLASSSGLSTDLANGSFEILDT 378

Query: 251 LDR-----FSFETVLHALERATAIRTLAEPTLTAISGQSA------SFTSGGQHLYKTVS 299
                      + +L AL +   +       L   +  +A        T   +    ++ 
Sbjct: 379 ATGKAAQFAGSQFMLQALSKQANVTDTKTLNLMTTNLATAGLLIGKQTTYLQRSSITSIG 438

Query: 300 SSTGATSVT-----THDYGVVLHFTPTVLSPG-RIGLRIQTEVS--------EPVIGVNA 345
           S   +  V          G  +   P +L+   ++ L +  +++        +      +
Sbjct: 439 SGNSSEPVQSLEPGQITTGTNIVILPKILNDNEKMMLTMMLDITSLNKLRKIDTADKKLS 498

Query: 346 GDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIP---ILGALFRNSR 402
            + P          + L  G TI+++G  +      K+G+      P   I+G    N  
Sbjct: 499 IEGPDSDSSSIPQRIWLKPGETILMSGFEQIVKDGSKQGM---GD-PNNIIMG---GNMS 551

Query: 403 FNREETEIFIAATPFL 418
            + ++    I  TP L
Sbjct: 552 GSDKKQSFVITITPIL 567


>gi|331013472|gb|EGH93528.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 234

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/228 (13%), Positives = 64/228 (28%), Gaps = 19/228 (8%)

Query: 149 GMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRD 208
           G + +     R      T            S+ +  +   N A   QV   V + E    
Sbjct: 7   GAMLSTSPPDRMYLSPSTGTLTVTDRPDVLSNIETYLAKTNHAITQQVLFNVKVFEATLT 66

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS-----FETVLHAL 263
              Q+    +   +S       +       +S        G++D  +        ++ A+
Sbjct: 67  DTDQLALNWAAVYNSLSTKWGLSLSNTVPGISSSAISGSVGIVDTANSAWAGSNAIIQAI 126

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY--------GVV 315
                I  +  P++T ++ Q A    G    Y     +    SV +           G  
Sbjct: 127 AEQARISNVRSPSVTTLNLQPAPLQIGNVQGYIPSVQTNTTASVGSSTAITPGTITSGFN 186

Query: 316 LHFTPTVLSPGR------IGLRIQTEVSEPVIGVNAGDMPSYRVRKAD 357
           +   P ++          I +  +          ++  +P+Y  +   
Sbjct: 187 MTLQPRLMDDDEMLLMVSINMSSKPTFEPFTSNGSSVQIPNYDAKSLS 234


>gi|220922544|ref|YP_002497846.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
 gi|219947151|gb|ACL57543.1| hypothetical protein Mnod_2580 [Methylobacterium nodulans ORS 2060]
          Length = 217

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 9/136 (6%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           M  + L +   +      +       I            + I    V I  VP  + DVL
Sbjct: 21  MGKVGLIAILVTALSFSAVFAQEPVNI--------PKDILRINAGSVEIFAVPEPMSDVL 72

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           V +   ADV + S R + +  K  G+ N+IL+G + K +  LD+L+ +        +R+ 
Sbjct: 73  VGESRIADVAIISDRRIAVTAKAPGRTNIILMGENRKLLSKLDVLVFKAEDENGNPIRKQ 132

Query: 131 IADSNIRVEMVSDTVV 146
            +   I     +  V+
Sbjct: 133 -SGKQINTYYENGQVI 147


>gi|329847248|ref|ZP_08262276.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
 gi|328842311|gb|EGF91880.1| outer membrane channel protein [Asticcacaulis biprosthecum C19]
          Length = 158

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/133 (18%), Positives = 51/133 (38%), Gaps = 22/133 (16%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M +  R   ++ +  L ++ P++A  P                      +++  N  + +
Sbjct: 1   MTFSIRAALSVTAFGLMAAVPALAGQP----------------------VTVEKNHTLRV 38

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
            +      V+V +P  ADV V   RT+Y+ GK  G + V + G DG+ + + ++ +    
Sbjct: 39  TLVAPAGTVVVGNPDIADVTVVDSRTLYIVGKGFGSSAVNVAGRDGRSLFDGEVTVTAPK 98

Query: 121 AHLEMTLRRFIAD 133
                  +     
Sbjct: 99  RGAITVYKGLKPS 111


>gi|221067014|ref|ZP_03543119.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
 gi|220712037|gb|EED67405.1| conserved hypothetical protein [Comamonas testosteroni KF-1]
          Length = 596

 Score = 62.1 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/329 (16%), Positives = 109/329 (33%), Gaps = 51/329 (15%)

Query: 133 DSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK------KVMN 186
            SN R++      + +  + ++Q    AV  S   ++Q        ++ +      +V+ 
Sbjct: 274 QSNFRIDEAGSLDIFNSFMNSLQQMVAAVPGSSIAINQGTGRFAVTTTKEAMQRIRQVVK 333

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSI--------TGSSSGPSKSFAADFGGKF 238
             N +   QV +++ I  +      + G    +         G++     S   D  G+F
Sbjct: 334 SENESLTRQVRIQMDIYSITTKDGDEKGVNWGVVLNSLTSKWGATIDSPTSLVGDTAGQF 393

Query: 239 ------VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ 292
                 ++ GG+ +   V      +  + AL             + A++ Q A  T+   
Sbjct: 394 GMTILSLANGGNPNSGTVARWGGSQAAIQALNEYGTNIQHRPIEMQAMNRQWARKTNLND 453

Query: 293 HLYKTVS---------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV 343
             Y + +         S +          G      P +L  G + LR    ++  V   
Sbjct: 454 RSYVSETLPSTSTAAGSGSVGMKTANVTTGDRFMIQPAILDNGSVQLRFGISMTNLVAMT 513

Query: 344 NAGDMPSYRVRKA----------DTTVELPSGGTIVLAGLLK----DDIQQLKEGIPLLS 389
                    + +            +TV L +G  +VL G+ +    D+ ++L EG  LL+
Sbjct: 514 ETTSGQGTSISRVQNPERSGIDDQSTVMLKAGQVMVLTGMARYKAKDNRRRLAEGWSLLA 573

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFL 418
                     +   + E  E  +   P L
Sbjct: 574 G--------GSDAQSLEREEFLVVVRPVL 594


>gi|332161774|ref|YP_004298351.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|332161787|ref|YP_004298364.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666004|gb|ADZ42648.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666017|gb|ADZ42661.1| Bacterial type II and III secretion system protein [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 298

 Score = 61.7 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 43/119 (36%), Gaps = 4/119 (3%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N +++A  DQV ++  + E        + F                +  G    + GG 
Sbjct: 182 INSVDVA-RDQVLIQSLMFETSLSDGVDLSFAAGSASGHKVAGGFNTSALGSALSTAGGS 240

Query: 245 FSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG 303
           F   G+ D       L A++  +  + ++ P +   SGQ+   + G    + T   +  
Sbjct: 241 F---GIFDGNVLALSLRAVQSNSRSKVISTPRILTQSGQTGYISVGKNVPFITGKVTGN 296


>gi|332765291|gb|EGJ95516.1| hypothetical protein SFK671_5251 [Shigella flexneri K-671]
          Length = 422

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/225 (15%), Positives = 67/225 (29%), Gaps = 15/225 (6%)

Query: 106 GKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH-GMVRTIQDSQRAVELS 164
           G   +   +L               +   NI  ++  D+       V      +    ++
Sbjct: 209 GVATVVERLLNNGKALSNRQAQNDPMPPFNITQKVSEDSNDFSFSSVTNSSILEDVSLIA 268

Query: 165 --ETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGS 222
             ET       N       + ++  L+IA    + L + I ++ +  L  +G        
Sbjct: 269 YPETNSILVKGNDQQIQIIRDIITQLDIAKRH-IELSLWIIDIDKSELNNLGVNWQ---- 323

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + SF   FG  F       +    LD   F   + AL +      ++ P +     
Sbjct: 324 ---GTASFGDSFGASF--NMSSSASISTLDGNKFIASVMALNQKKKANVVSRPVILTQEN 378

Query: 283 QSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327
             A F +        V      +S+    YG +++  P     G 
Sbjct: 379 IPAIFDNNRTFYVSLVGERN--SSLEHVTYGTLINVIPRFSVSGT 421


>gi|150398537|ref|YP_001329004.1| hypothetical protein Smed_3348 [Sinorhizobium medicae WSM419]
 gi|150030052|gb|ABR62169.1| conserved hypothetical protein [Sinorhizobium medicae WSM419]
          Length = 140

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 39/79 (49%)

Query: 41  DVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVI 100
                  + + + ++   +L++   V  V++ +   AD  V   +T+ L G+N G  N++
Sbjct: 27  SGARAAEEMMRVYMDHARVLKLDRPVSKVIIGNSDVADATVADAKTIVLTGRNFGTTNLV 86

Query: 101 LIGHDGKQMLNLDILIERD 119
           ++  DG  M++  IL+  D
Sbjct: 87  ILDQDGNAMVDERILVSID 105


>gi|307943136|ref|ZP_07658481.1| PilQ [Roseibium sp. TrichSKD4]
 gi|307773932|gb|EFO33148.1| PilQ [Roseibium sp. TrichSKD4]
          Length = 161

 Score = 61.7 bits (148), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 40/76 (52%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
           +    I +   +++ +++  + ++      V+V +P  ADV +H   T+ + GK+ G  N
Sbjct: 20  VGSSAIAQEGPVTVMVDRAKVFRIQEPASTVIVGNPFIADVAMHDASTVVITGKSYGSTN 79

Query: 99  VILIGHDGKQMLNLDI 114
           ++++  + + +++  I
Sbjct: 80  LVILDDNNEPIIDEVI 95


>gi|323137421|ref|ZP_08072499.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
           49242]
 gi|322397408|gb|EFX99931.1| hypothetical protein Met49242DRAFT_1887 [Methylocystis sp. ATCC
           49242]
          Length = 180

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 26/158 (16%), Positives = 63/158 (39%), Gaps = 8/158 (5%)

Query: 17  FSSNPSVAKLPPIKEANAAVI-NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPT 75
            +  PS  +   +       + +++     K + I + L+   I+++P   Q +++ +P 
Sbjct: 23  MTLVPSFFRGALLLAFGVFGLESMATDASAKERPIRVELDYARIVRIPPGAQTLVIGNPL 82

Query: 76  KADVVVHSPRTMYLF-GKNVGQANVILIGHDGKQMLNLDILIERDIAHL--EMTLRRFIA 132
            ADV +     + +  GK+ G  N+I++   G Q+    + +      L  +  + R   
Sbjct: 83  VADVTMLRNSQLMVITGKSFGTTNLIVLDRTGAQVGESIVTVAPAEDKLVVQRGMHRESY 142

Query: 133 DSNIR----VEMVSDTVVLHGMVRTIQDSQRAVELSET 166
             N R    V++  D+  +   +  ++    A   +  
Sbjct: 143 SCNPRCAKAVDLADDSQYMSQTIDAVKAHDGAATSTRR 180


>gi|308094760|ref|ZP_07663039.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
 gi|308089697|gb|EFO39392.1| fimbrial assembly protein [Vibrio parahaemolyticus AN-5034]
          Length = 73

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 41/70 (58%)

Query: 350 SYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
           +   ++  T V + +G T+VL G+ +  I    + +PLL  +P+LGALFR S  N  ++E
Sbjct: 2   AIDTQRIGTQVLVNNGETVVLGGIFQHSITNSVDKVPLLGDLPLLGALFRRSYENVGKSE 61

Query: 410 IFIAATPFLV 419
           + I  TP +V
Sbjct: 62  LLIFVTPKVV 71


>gi|148258230|ref|YP_001242815.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
 gi|146410403|gb|ABQ38909.1| hypothetical protein BBta_7025 [Bradyrhizobium sp. BTAi1]
          Length = 145

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +++  ++++P  V  ++V +P  ADV + S   + + GK+ G  N I +   G+ +
Sbjct: 16  IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75

Query: 110 LNLDILIERDIAHLEM 125
           ++  I +      L  
Sbjct: 76  VDRQIQVAGPTDRLVT 91


>gi|163785750|ref|ZP_02180256.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
 gi|159878981|gb|EDP72979.1| general secretion pathway protein D [Hydrogenivirga sp. 128-5-R1-1]
          Length = 363

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 71/234 (30%), Gaps = 33/234 (14%)

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
           + +    +   + I   +   +R   ++NI              V   ++ +   ++   
Sbjct: 142 QLLQYTQVQQNKQIKS-QQAPKRISPNANIN------------TVNISRNRKEKPKIIAE 188

Query: 167 FLSQSGRNQYANSSSKKVMNLLNIAGED--QVTLKVTIAEVRRDILKQIGFQHSITGSSS 224
             + +          + + NL+    +   QV +   I EV +  LK+IG +  I GS  
Sbjct: 189 KTTNTLVIYANRLEYEAIKNLVENLDKQKKQVLITALITEVSQKALKEIGVRWQILGSYG 248

Query: 225 GPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH--------------ALERATAIR 270
           G +        G +   G      GVL        +                L+R T   
Sbjct: 249 GAAFKGGLSTEGFYNLLGSTNFAAGVLSSSGRNVSISGNTLFFPDLLFLLSLLDRGTGFN 308

Query: 271 TLAEPTLTAISGQSASFTSGGQHLY----KTVSSSTGATSVTTHDYGVVLHFTP 320
            ++ P +  +    A+        +    K   +     +    + G+ L   P
Sbjct: 309 IISSPKILTMDNTEATINVSQVTPFASSLKFDVNGNPIINYDYKEVGLKLKVLP 362


>gi|325275755|ref|ZP_08141633.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
 gi|324099115|gb|EGB97083.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
          Length = 76

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 4/63 (6%)

Query: 391 IPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD--LSRPDDHYS--VEDDAKAFFFN 446
           +PILGA FRNS   R+ETE+ +  TP LV+P+A+       P +H         + FF  
Sbjct: 5   LPILGAFFRNSTMRRDETELLMIVTPHLVQPLAVNAKLPPLPGEHLRNYDPSWGRLFFLE 64

Query: 447 RVN 449
             N
Sbjct: 65  NGN 67


>gi|316933043|ref|YP_004108025.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
 gi|315600757|gb|ADU43292.1| hypothetical protein Rpdx1_1675 [Rhodopseudomonas palustris DX-1]
          Length = 162

 Score = 61.3 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 42/95 (44%)

Query: 31  EANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLF 90
            +    +  +    G    IS+ +++  ++++P D+  ++V +P  ADV +     + + 
Sbjct: 16  PSLLLGLLSASATAGTEDSISVNVDQAKLIRLPQDIATIVVGNPLIADVTLQPGGMVVVT 75

Query: 91  GKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           GK  G  NVI +   G  + +  I +E     +  
Sbjct: 76  GKGYGATNVIAMDRKGAIVADRLIQVEGPSDKVVT 110


>gi|86748911|ref|YP_485407.1| hypothetical protein RPB_1788 [Rhodopseudomonas palustris HaA2]
 gi|86571939|gb|ABD06496.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 164

 Score = 61.3 bits (147), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 43/88 (48%)

Query: 38  NISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQA 97
           ++S    G    IS+ +++  ++++P ++  ++V +P  ADV +     + + GK  G  
Sbjct: 24  SLSVASAGTEDTISVSVDQAKLIRLPQNISTLVVGNPLIADVAMQPGGMVVVTGKGYGAT 83

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEM 125
           NVI +   G  + +  I +E  +  +  
Sbjct: 84  NVIAMDRKGAVIADRLIQVEGPMDKVVT 111


>gi|157165775|ref|YP_001467405.1| protein yitk [Campylobacter concisus 13826]
 gi|157101562|gb|ABV23530.1| hypothetical protein CCC13826_2274 [Campylobacter concisus 13826]
          Length = 128

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 36/77 (46%)

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
           E ++  ++   P    ++  ++  L  G  +VL+G+ K    + + G+P+L  I +L  L
Sbjct: 49  EDILSQSSSFTPIVSKKELKSSYSLKRGDVLVLSGINKKTNAKQRNGVPVLKDIWLLKYL 108

Query: 398 FRNSRFNREETEIFIAA 414
           F   + +   + + +  
Sbjct: 109 FSVEQDSEINSVLTLTI 125


>gi|121726048|ref|ZP_01679347.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V52]
 gi|121631530|gb|EAX63900.1| toxin co-regulated pilus biosynthesis outer membrane protein C
           [Vibrio cholerae V52]
          Length = 250

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 9/211 (4%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           + L    + Q+ +   +  +  + L Q+  +  I  +      S   D        GG  
Sbjct: 7   DKLINESKMQIAVDYRVVSLSEERLNQLAAKFGIENAGKYSITSDMVDAI-SLSQVGGGL 65

Query: 246 SVKGVLDRFSFETVLHALERA--TAIRTLAEPTLTAISGQSASFTSG---GQHLYKTVSS 300
                      + V++ L +        +  P        + +                 
Sbjct: 66  GASYRSASARLDAVVNELSQEVMHEGHFIGIPNRVMPLNVTTNSKYISSIETTKDTNTDE 125

Query: 301 STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--GVNAGDMPSYRVRKADT 358
            T    V+    G  +   P +L  GRI +       + V         +P+    ++  
Sbjct: 126 ETRTVKVSDLVTGFSMMVMPKILDDGRIQISSGFSRKQLVSIGTAQGITLPTVDENESMN 185

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLS 389
           TV +  G  + LA L KD+  Q   G+ LL 
Sbjct: 186 TVTMNPGE-VRLAMLFKDNYIQNSNGVQLLG 215


>gi|213621880|ref|ZP_03374663.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 52

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 25/50 (50%)

Query: 355 KADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           +  +   L +G +++L G  +      +  IPLL  IP++G LFRN    
Sbjct: 2   EIASQATLLAGQSLLLGGFKQGKQIHSQNKIPLLGDIPVVGHLFRNDTTQ 51


>gi|218530650|ref|YP_002421466.1| hypothetical protein Mchl_2699 [Methylobacterium chloromethanicum
           CM4]
 gi|218522953|gb|ACK83538.1| conserved hypothetical protein [Methylobacterium chloromethanicum
           CM4]
          Length = 159

 Score = 60.9 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 46/116 (39%), Gaps = 6/116 (5%)

Query: 8   FFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQ 67
              + S  L ++  +   +         V      E      +S+ ++   ++++P   Q
Sbjct: 1   MPRLRSALLPATASAAIMMVVF------VGQAHANEPVPQGIVSVQVDNAKVIRLPEKTQ 54

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            V+V +P  AD+ +     + L GK+ G  N+I +   G  +    I ++   A +
Sbjct: 55  TVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIALDGKGAMLAESTISVQAPQASI 110


>gi|146338128|ref|YP_001203176.1| hypothetical protein BRADO1025 [Bradyrhizobium sp. ORS278]
 gi|146190934|emb|CAL74939.1| conserved hypothetical protein [Bradyrhizobium sp. ORS278]
          Length = 145

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 39/76 (51%)

Query: 50  ISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM 109
           I++ +++  ++++P  V  ++V +P  ADV + S   + + GK+ G  N I +   G+ +
Sbjct: 16  IAVNVDQAKLVKLPDRVATLVVGNPMIADVTLQSGGIIVVTGKSYGATNFIAMDRGGQVL 75

Query: 110 LNLDILIERDIAHLEM 125
           ++  I +      L  
Sbjct: 76  IDRQIQVAGPTDRLVT 91


>gi|114705461|ref|ZP_01438369.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
 gi|114540246|gb|EAU43366.1| hypothetical protein FP2506_10991 [Fulvimarina pelagi HTCC2506]
          Length = 156

 Score = 60.9 bits (146), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 11  MMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVL 70
           + +  L +    V   P + EA   +             I+I ++   ILQ+      V+
Sbjct: 6   LRAGLLGTLAILVGSTPAVAEAKKDM-------------IAIAVDHARILQIDRGAGTVI 52

Query: 71  VSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           + +P   D+ V S   + L GK+ G  NVI++  D   +++  + ++  
Sbjct: 53  IGNPAIVDIEVLSEERLVLTGKSYGITNVIILDRDNSVLMDEQVAVQTF 101


>gi|189348545|ref|YP_001941741.1| type II secretory pathway component [Burkholderia multivorans ATCC
           17616]
 gi|189338683|dbj|BAG47751.1| type II secretory pathway component [Burkholderia multivorans ATCC
           17616]
          Length = 518

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A  +  K++   N     QV + V   ++  +   Q G    +  ++        +
Sbjct: 251 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 310

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        + GG   V  +     F     V++AL +          T   ++G   S
Sbjct: 311 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 370

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  SS   T+ +    G+          ++  P V    +I L    +
Sbjct: 371 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 430

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
            S+      +    S + ++            D T+ L  G T+VL   +          
Sbjct: 431 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 490

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GI  L              +N+ +T   I     +V
Sbjct: 491 GIAGL-----------TGSWNKSKTFQVIMLKATVV 515


>gi|27376555|ref|NP_768084.1| hypothetical protein blr1444 [Bradyrhizobium japonicum USDA 110]
 gi|27349696|dbj|BAC46709.1| blr1444 [Bradyrhizobium japonicum USDA 110]
          Length = 165

 Score = 60.5 bits (145), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 38/81 (46%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGH 104
                I++ +++  ++++P  V  ++V +P  ADV +     + + GK  G  N I +  
Sbjct: 31  STADTIAVNVDQAKLVRLPGKVATIVVGNPLIADVTLQPGGMIVVTGKGYGATNFIALDR 90

Query: 105 DGKQMLNLDILIERDIAHLEM 125
            G+ +++  I +E     L  
Sbjct: 91  GGEILVDRQIQVEGPSDRLVT 111


>gi|163756987|ref|ZP_02164094.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
 gi|161323106|gb|EDP94448.1| type II general secretion pathway (GSP) D protein [Kordia algicida
           OT-1]
          Length = 612

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 9/115 (7%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V + +V +  + + G    I    +  S S          +   +  + G     S
Sbjct: 479 VLIEVMLIDVSKLSVVETGISWGIGDEPTQTSGSLFPTTNLTLGANTVNRVIGGFDGFGS 538

Query: 256 FE---------TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
           F            + A+E+   I+  + P ++ ++G  A+ ++G    Y     +
Sbjct: 539 FNLGKVVPEFFANISAMEQDGDIKIRSTPKISTLNGHRATLSNGTTSYYAVTQRN 593


>gi|161522585|ref|YP_001585514.1| type II secretory pathway component PulD-like protein [Burkholderia
           multivorans ATCC 17616]
 gi|160346138|gb|ABX19222.1| type II secretory pathway component PulD-like protein [Burkholderia
           multivorans ATCC 17616]
          Length = 534

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A  +  K++   N     QV + V   ++  +   Q G    +  ++        +
Sbjct: 267 DTKEAADNIGKLLKHENAISTRQVAITVRTLQIALNKGSQAGVNADVVFNAMHAGLARYA 326

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        + GG   V  +     F     V++AL +          T   ++G   S
Sbjct: 327 ISFTSPTSLATGGGAVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  SS   T+ +    G+          ++  P V    +I L    +
Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
            S+      +    S + ++            D T+ L  G T+VL   +          
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GI  L              +N+ +T   I     +V
Sbjct: 507 GIAGL-----------TGSWNKSKTFQVIMLKATVV 531


>gi|86355860|ref|YP_467752.1| hypothetical protein RHE_CH00201 [Rhizobium etli CFN 42]
 gi|86279962|gb|ABC89025.1| hypothetical conserved protein [Rhizobium etli CFN 42]
          Length = 102

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 36/66 (54%)

Query: 54  LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLD 113
           ++   +L++   V  V+V +   AD  V   +T+ L G++ G  N++L+  DG  +L+  
Sbjct: 1   MDHARVLKLDRPVSKVIVGNAQVADATVADAKTIVLTGRSFGTTNLVLLDADGNAILDER 60

Query: 114 ILIERD 119
           IL+  D
Sbjct: 61  ILVSID 66


>gi|166219|gb|AAA32222.1| gene IV protein [Enterobacteria phage f1]
          Length = 51

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%)

Query: 372 GLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
           GL          G+P LSKIP++G LF +   + EE+ +++     +V+ +
Sbjct: 1   GLTDYKNTSQDSGVPFLSKIPLIGLLFSSRSDSNEESTLYVLVKATIVRAL 51


>gi|166216|gb|AAA32221.1| gene IV [Enterobacteria phage f1]
          Length = 60

 Score = 60.1 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%)

Query: 338 EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILG 395
           + +             R   TTV L  G T++L GL          G+P LSKIP++G
Sbjct: 2   DSLSSSTQASDVITNQRSIATTVNLRDGQTLLLGGLTDYKNTSQDSGVPFLSKIPLIG 59


>gi|134287561|ref|YP_001109727.1| Type II secretory pathway component PulD-like protein [Burkholderia
           vietnamiensis G4]
 gi|134132211|gb|ABO59946.1| Type II secretory pathway component PulD-like protein [Burkholderia
           vietnamiensis G4]
          Length = 534

 Score = 59.8 bits (143), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 45/276 (16%), Positives = 85/276 (30%), Gaps = 40/276 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A  +  K++N  N     QV + V   ++  +   Q G    +  ++        +
Sbjct: 267 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGMNADVVFNAMHAGLARYA 326

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        + GG   V  +     F     V++AL +          T   ++G   S
Sbjct: 327 ISFMSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  SS   T+ +    G+          ++  P V    +I L    +
Sbjct: 387 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
            S+      +    S + ++            D T+ L  G T+VL   +          
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTVVLYGAITDQADSTTNT 506

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GI  L              +N+ +T   I     +V
Sbjct: 507 GIAGL-----------TGSWNKAKTFQVIMLKATVV 531


>gi|92116017|ref|YP_575746.1| hypothetical protein Nham_0395 [Nitrobacter hamburgensis X14]
 gi|91798911|gb|ABE61286.1| conserved hypothetical protein [Nitrobacter hamburgensis X14]
          Length = 161

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 46/117 (39%), Gaps = 11/117 (9%)

Query: 9   FTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD 68
            +  S+   S   ++   P    A                 IS+ +++  ++++P  +  
Sbjct: 9   RSRASVVGLSLATAILLGPTAALAEV-----------TSDPISVNVDQAKLVKLPGHIAT 57

Query: 69  VLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++V +P  ADV +     + + GK  G  NVI +   G  +++  I +E     +  
Sbjct: 58  IVVGNPLIADVTLQPGGLVVVTGKGYGATNVIAMDRAGSILVDRVIQVEGPSDQVVT 114


>gi|28173601|gb|AAO32809.1| XpsD [Xanthomonas oryzae pv. oryzae]
          Length = 65

 Score = 59.8 bits (143), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHY 434
           IP LSK+P++GALF +   N    E+ +  TP +V+    ++     D Y
Sbjct: 1   IPFLSKLPVVGALFGSKSRNSARREVIVLITPSIVR--NPQEARNLTDEY 48


>gi|91977981|ref|YP_570640.1| hypothetical protein RPD_3516 [Rhodopseudomonas palustris BisB5]
 gi|91684437|gb|ABE40739.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
          Length = 161

 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 41/87 (47%)

Query: 39  ISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQAN 98
            S         +S+ +++  ++++P ++  ++V +P  ADV +     + + GK  G  N
Sbjct: 24  SSAAMAAGEDTVSVNVDQAKLIRLPQNISTLVVGNPLIADVTLQPGGMVVVTGKGYGATN 83

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEM 125
           VI +   G  + +  I +E  + ++  
Sbjct: 84  VIAMDRKGAVIADRLIQVEGPMDNVVT 110


>gi|188581656|ref|YP_001925101.1| hypothetical protein Mpop_2404 [Methylobacterium populi BJ001]
 gi|179345154|gb|ACB80566.1| conserved hypothetical protein [Methylobacterium populi BJ001]
          Length = 160

 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 38/82 (46%)

Query: 42  VEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVIL 101
            +      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+I 
Sbjct: 30  NDPAPQGAVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNLIA 89

Query: 102 IGHDGKQMLNLDILIERDIAHL 123
           +   G  +    I ++   A +
Sbjct: 90  LDGRGAMLAESTISVQAAQASI 111


>gi|172064588|ref|YP_001812238.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MC40-6]
 gi|171998073|gb|ACB68989.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MC40-6]
          Length = 536

 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 85/275 (30%), Gaps = 38/275 (13%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A  +  K++   N     QV + V   ++      + G    +  ++        +
Sbjct: 269 DTKEAADNIGKLLQHENAISTRQVAVTVRTIQISLSKGSEAGANADVVFNAMHAGLARYA 328

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        + GG   V  +     F      ++AL +          T   ++G   S
Sbjct: 329 ISFASPTSLATGGGSVGVSVLRPDAPFSGTNAAINALNKYGRTVQDNTMTKMTLNGLPVS 388

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  S+    + +    G+          ++  P V    +I L    +
Sbjct: 389 VASFQSDDYLRSTSPSAGTLNATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 448

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVLAGLLKDDIQQLKEG 384
            S+      +  + S + ++            D T+ L  G T+VL G + D        
Sbjct: 449 SSKLNGPFTSAGVGSGQTQQQIQLAHTIGTKDDQTIALSDGQTVVLYGAMTDHADSTTNA 508

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
                    +G L  +  +N+ +T   I     +V
Sbjct: 509 --------GIGGLTGS--WNKSKTFQIIMLKATVV 533


>gi|304392391|ref|ZP_07374332.1| PilQ [Ahrensia sp. R2A130]
 gi|303295495|gb|EFL89854.1| PilQ [Ahrensia sp. R2A130]
          Length = 171

 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 52/116 (44%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDP 74
            + S   + A   PI  A    +          K + + +++  ++++      V+V +P
Sbjct: 12  AIRSFALAGAFFAPIIAATVLPVAALADGHSAKKHLEVVVDRARVVRIAKPADTVIVGNP 71

Query: 75  TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           +  D  +   RT+ L G+  G  N+I++  DG  +++  ++++ +  +L    R+ 
Sbjct: 72  SIVDATIQDARTLVLTGRLFGVTNIIVLDSDGDPIVDETVVVKGEETNLVHVYRQA 127


>gi|90425192|ref|YP_533562.1| hypothetical protein RPC_3708 [Rhodopseudomonas palustris BisB18]
 gi|90107206|gb|ABD89243.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB18]
          Length = 165

 Score = 59.4 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 47/114 (41%), Gaps = 19/114 (16%)

Query: 12  MSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLV 71
           + I L  + P++A+                        I++ +++  +++ P  +  ++V
Sbjct: 19  IGIGLLCALPAMAETA-------------------NGIIAVNVDQAKLVRFPARIATIVV 59

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
            +P  ADV +     + + GK  G  NVI +   G+ +L+  I +E     +  
Sbjct: 60  GNPLIADVTLQPGGIIVVTGKGYGATNVIAMDRAGEVLLDRVIQVEGPTDQVVT 113


>gi|254473697|ref|ZP_05087092.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
 gi|211957083|gb|EEA92288.1| conserved hypothetical protein [Pseudovibrio sp. JE062]
          Length = 173

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 46/98 (46%), Gaps = 1/98 (1%)

Query: 25  KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP 84
               I  A  A I+ + +       + +  ++  + ++    + +++ +P+ ADV VH  
Sbjct: 21  ASGAILTAMIAGISATSIAPAYA-DVEVVADQAKVFRLEEPAETIILGNPSIADVTVHDR 79

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            T+ + GK+ G  N++++    + ++   I +  ++A 
Sbjct: 80  LTIVITGKSYGTTNLVVLNDASEPVVEELITVTAEMAG 117


>gi|254418061|ref|ZP_05031785.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
 gi|196184238|gb|EDX79214.1| hypothetical protein BBAL3_371 [Brevundimonas sp. BAL3]
          Length = 138

 Score = 59.0 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 35/76 (46%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
              +++ +++   +Q+      V+V +P  ADV V    T+++ GK  G   V+ +   G
Sbjct: 27  SGALNVEIDRSARVQLNGAASSVIVGNPQIADVTVVDANTLFIVGKGYGVTEVVAVDGVG 86

Query: 107 KQMLNLDILIERDIAH 122
           + +   +I++      
Sbjct: 87  RTLFQREIVVTGGSTG 102


>gi|254561617|ref|YP_003068712.1| hypothetical protein METDI3204 [Methylobacterium extorquens DM4]
 gi|254268895|emb|CAX24856.1| conserved hypothetical protein; putative exported protein precursor
           [Methylobacterium extorquens DM4]
          Length = 160

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
              E      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+
Sbjct: 28  RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87

Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123
           I +   G  +    I ++   A +
Sbjct: 88  IALDGKGAMLAESTISVQAPQASI 111


>gi|255609758|ref|XP_002539091.1| conserved hypothetical protein [Ricinus communis]
 gi|223508756|gb|EEF23292.1| conserved hypothetical protein [Ricinus communis]
          Length = 279

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/163 (13%), Positives = 41/163 (25%), Gaps = 40/163 (24%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------------------------- 221
            QV ++  I E R    + +G +                                     
Sbjct: 118 RQVLIEARIVEARDTFGRALGVRLGGGDLRAQRGGDGGYSIGGDNRVAIGTGFDNANASA 177

Query: 222 -------SSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAE 274
                  ++SG   +          S     S+            L A+E     + ++ 
Sbjct: 178 GASGQAVNTSGSFVNLPGKLSNVANSGTFAMSIFNAAANRFLTLELSAMESDGQGKIISS 237

Query: 275 PTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
           P L       A    G ++ Y   +   GAT++      + L 
Sbjct: 238 PRLVTADQTKALIEQGTEYPYSVTAP-NGATTIAFKKAVLKLE 279


>gi|163851899|ref|YP_001639942.1| hypothetical protein Mext_2476 [Methylobacterium extorquens PA1]
 gi|240139022|ref|YP_002963497.1| hypothetical protein MexAM1_META1p2441 [Methylobacterium extorquens
           AM1]
 gi|163663504|gb|ABY30871.1| conserved hypothetical protein [Methylobacterium extorquens PA1]
 gi|240008994|gb|ACS40220.1| conserved hypothetical protein; putative exported protein precursor
           [Methylobacterium extorquens AM1]
          Length = 160

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 38/84 (45%)

Query: 40  SDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANV 99
              E      +S+ ++   ++++P   Q V+V +P  AD+ +     + L GK+ G  N+
Sbjct: 28  RANEPVPQGIVSVQVDNAKVIRLPEKTQTVVVGNPMIADITLQKNGVVVLTGKSFGTTNL 87

Query: 100 ILIGHDGKQMLNLDILIERDIAHL 123
           I +   G  +    I ++   A +
Sbjct: 88  IALDGKGAMLAESTISVQAPQASI 111


>gi|83312848|ref|YP_423112.1| hypothetical protein amb3749 [Magnetospirillum magneticum AMB-1]
 gi|82947689|dbj|BAE52553.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
          Length = 150

 Score = 58.6 bits (140), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDG 106
            + + I L    +L +    + V+V +P  ADV V  PRT+ +FGK  G   + ++   G
Sbjct: 25  TEALEIPLGGATLLPMRGVARSVVVGNPAIADVTVDGPRTITVFGKAPGGTTLAVLDAGG 84


>gi|325274960|ref|ZP_08140963.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
           TJI-51]
 gi|324099907|gb|EGB97750.1| type IVB pilus formation outer membrane protein [Pseudomonas sp.
           TJI-51]
          Length = 427

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 16/108 (14%), Positives = 36/108 (33%), Gaps = 3/108 (2%)

Query: 185 MNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD 244
           +N  N     QV L V +  V       +G   ++  ++             +  +    
Sbjct: 315 LNGENSNITKQVLLNVKVLSVTLTDKDDLGIDWNLVYTAVNGKWGIGWKNVTQADAAAVQ 374

Query: 245 FSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
            SV  +     +     ++ AL +   + T+  P++T ++ Q      
Sbjct: 375 GSVSILDTSSQWAGSNLLVKALAQQGRVSTITSPSVTTLNLQPVPVQV 422


>gi|311109976|ref|YP_003982827.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
 gi|310764665|gb|ADP20112.1| lipoprotein 4 [Achromobacter xylosoxidans A8]
          Length = 556

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/263 (18%), Positives = 87/263 (33%), Gaps = 39/263 (14%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N +       V  +V    V  +     G    +  S++  + + AA  G    + G   
Sbjct: 299 NRMLTRRVRLVFEEVV---VSVNDQHDAGIDWRVIYSTASAAAAGAAPTGTMSTAAGTIA 355

Query: 246 SVKGVLDRF-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304
           S       F   + ++ AL+            L+A++ +  ++       Y     +TG 
Sbjct: 356 SATVGSGPFKGSDAIIKALDEIGTTTRSTAIPLSALNRRPITYADRKTFSYINEVQTTGL 415

Query: 305 TSVTT-----------------HDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGV-- 343
           TS  +                    G  L   P     G+I L I  +  +++P+  +  
Sbjct: 416 TSSDSSNGSFSTVPNVSVRQKDVTVGQFLTLVPDAQEDGQILLTISYDSTINDPLQTIKF 475

Query: 344 ----NAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGAL 397
               N  ++    VR       V L SG  +V+AG  KD  Q  ++      K PI   L
Sbjct: 476 GDSKNGIEIQQLTVRGNGMVQQVALQSGQPLVIAGFQKDQDQTSRQR--FDEKAPI---L 530

Query: 398 FRNSRFNREETEI--FIAATPFL 418
           F  +     +  +   I  T  +
Sbjct: 531 FGGANSTNNQK-LYNLIIVTAQV 552


>gi|257486850|ref|ZP_05640891.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 102

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 4/92 (4%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I +  +          ++  +P+Y  +     V+L SG T++L+G   +++    + I 
Sbjct: 13  SINMSSKPTFEPFTSNGSSVQIPNYDAKSLSPKVKLRSGQTLILSGF--EELSDNTDKI- 69

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFL 418
                P    L    +    ++ + +  TP +
Sbjct: 70  GTGS-PGFFGLGGGRKRTSSKSVLVVLITPIV 100


>gi|262064151|gb|ACY07135.1| IV [Enterobacteria phage f1]
          Length = 294

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/264 (15%), Positives = 82/264 (31%), Gaps = 36/264 (13%)

Query: 55  NKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDI 114
            + +I+  P     V V      DV   + R  ++    +   N  ++G +   +   D 
Sbjct: 43  GESVIV-SPDVKGTVTVYSS---DVKPENLRNFFIS--VLRANNFDMVGSNPSIIQKYDP 96

Query: 115 LIERDIAHLEMTLRRFI-----ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLS 169
             +  I  L  +  +             V   +D V     +  ++       + E F+ 
Sbjct: 97  NNQDYIDELPSSNNQEYDDNSAPSGGFFV-PQNDNVTQTFKINNVRAKDLI-RVVELFVK 154

Query: 170 QSGRNQYANSSSKKVMNLLNIAGE------------------DQVTLKVTIAEVRRDILK 211
            +        S     NLL ++                    DQ+ ++  I EV++    
Sbjct: 155 SNTSKSSNVLSIDG-SNLLVVSAPKDILNNLPQFLSTVDLPTDQILIEGLIFEVQQGDTL 213

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
              F       +     +          S GG F   G+ +       + AL+  +  + 
Sbjct: 214 DFSFAAGSQRGTVAGGVNTDR-LTSVLSSAGGSF---GIFNGDVLGLSVRALKTNSHSKI 269

Query: 272 LAEPTLTAISGQSASFTSGGQHLY 295
           L+ P +  +SGQ  S + G    +
Sbjct: 270 LSVPRILTLSGQKGSISVGQNVPF 293


>gi|220923702|ref|YP_002499004.1| hypothetical protein Mnod_3797 [Methylobacterium nodulans ORS 2060]
 gi|219948309|gb|ACL58701.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 151

 Score = 58.2 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 38/91 (41%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMY 88
           ++      +            +++   +V I++     + V+V DP  ADV V +  T+ 
Sbjct: 1   MRAFAIIPLLAIVTSASAADSLALRPGQVEIVKTSRGARTVVVGDPDIADVTVANESTIV 60

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           +  K  G  +++L+   G++ L   + I   
Sbjct: 61  VTAKENGVTDLVLLDESGREFLRKQLQIGSP 91


>gi|118589699|ref|ZP_01547104.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
 gi|118437785|gb|EAV44421.1| hypothetical protein SIAM614_04645 [Stappia aggregata IAM 12614]
          Length = 154

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 38/75 (50%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
           AV   + V + +   + + +++  + ++      V+V +P  ADV +    T+ + GK+ 
Sbjct: 13  AVALSTTVAVAQDGPVLVTVDRAKVFRIEDGAAAVIVGNPFIADVAMFDQNTVVITGKSY 72

Query: 95  GQANVILIGHDGKQM 109
           G  N++++  D K +
Sbjct: 73  GTTNLVILDGDNKPI 87


>gi|281356795|ref|ZP_06243286.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
 gi|281316922|gb|EFB00945.1| type II and III secretion system protein [Victivallis vadensis ATCC
           BAA-548]
          Length = 502

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 47/266 (17%), Positives = 80/266 (30%), Gaps = 59/266 (22%)

Query: 201 TIAEVRRDILKQIGFQHSITGSSSGPSKSFAA------DFGGKFVSEGGDFSVKGVLDRF 254
           T+ EVR  IL+ +G  +    +  G +   A         GG         +  G     
Sbjct: 196 TVYEVRDSILRDLGIDYLGWRNGPGLNLFQAGMDALSLSSGGSSAVNAASGAFGGFFFAP 255

Query: 255 SFET-VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-STGATSVTTHDY 312
            F+   +  L++          +LT  +  SA ++ G     + +         V     
Sbjct: 256 QFDASFIRILQQDGLANIANTASLTVANSDSAVYSIGFHPESQAIFKRDNDQLQVGVSGL 315

Query: 313 GVVLHFTPTVLSPGR--------------------------------------------- 327
           G+     P   S G                                              
Sbjct: 316 GMQGGVKPPESSTGAENPLLTGSAPPPPLALSVTAPRICFRGEADARTGQVPYRLSDYNT 375

Query: 328 -----IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
                +    + +V++ V   N G   +  + +      L SG   +L    K+   +  
Sbjct: 376 TVNALVTFNYKIQVADVVERNNYGAELA-EIDQLSGDCNLLSGEEKILTMWHKESEVEQT 434

Query: 383 EGIPLLSKIPILGALFRNSRFNREET 408
            G+P LS+IPIL  LF  +  NRE+T
Sbjct: 435 IGVPFLSEIPILKHLFSTTTINREKT 460


>gi|120611389|ref|YP_971067.1| Type II secretory pathway component PulD-like protein [Acidovorax
           citrulli AAC00-1]
 gi|120589853|gb|ABM33293.1| Type II secretory pathway component PulD-like protein [Acidovorax
           citrulli AAC00-1]
          Length = 566

 Score = 57.8 bits (138), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/196 (19%), Positives = 58/196 (29%), Gaps = 19/196 (9%)

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSF 256
            + VTI  V     +  G    +       +    A       + G    +       + 
Sbjct: 331 LIDVTIYNVSMTKEETAGVSMDLVYRRLNGNGVGVAGAAPLQPANGQPGRITLSFSDPAS 390

Query: 257 ET-----VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHD 311
                  V  AL+    +    +    AI+GQ + F       Y T  S+T   +V T  
Sbjct: 391 RLAGSRMVAEALQSVGNVALYKKGQFMAINGQPSPFQVVDDEEYNTSVSATQTANVGTQL 450

Query: 312 Y--------GVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDM------PSYRVRKAD 357
                    G+  +  P +L   RI L+ Q E+S       A         P    +   
Sbjct: 451 ATQKAVLTTGLTGNVLPLILGDNRILLQYQMEISAVSNMNPAVVNGILTYSPKRSRQSFQ 510

Query: 358 TTVELPSGGTIVLAGL 373
               L  G  IVL G 
Sbjct: 511 QQAFLKDGDAIVLFGY 526


>gi|240142222|ref|YP_002966732.1| hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
           AM1]
 gi|240012166|gb|ACS43391.1| Hypothetical protein MexAM1_META2p0544 [Methylobacterium extorquens
           AM1]
          Length = 575

 Score = 57.4 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 63/246 (25%), Gaps = 55/246 (22%)

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G    I  +   P +       G  VS+     + G     S    +  L      +   
Sbjct: 314 GTSTGIGLTQIDPGRVMDLTKDGLVVSQTSLGRLGGAFGATSITGAIDFLSTFGTTKVDQ 373

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATS------------------VTTHDYGVV 315
              +  +SG      SG Q  Y       G  +                      + G+ 
Sbjct: 374 NVQMKTLSGTEVKLRSGQQVPYVRGVQLAGLGAGGYGNGYGGGYGGLGSSLTDKVETGLT 433

Query: 316 LHFTPTVLSPGRI-GLRIQTEVSEP--------VIGVNAGDMPSYRVRKADTTVELPSGG 366
           +  TP   S   +  + +  ++ E            +     P  + ++    V + +G 
Sbjct: 434 MEVTPYFDSDAEVVTMEVDVKLKEILSFVELNAGNQIGTFTQPLTQDQELTNIVRMQAGR 493

Query: 367 TIVLAGLLKDDIQQLK----------------EGIPLLSKIPILGALFRNSRFNREETEI 410
           T+V+ GL  D                       G+            F N     +   +
Sbjct: 494 TVVIGGLQSDSESYNGTEPTALRNATATRAGGSGV------------FGNRSQKVKRNAL 541

Query: 411 FIAATP 416
           FI   P
Sbjct: 542 FIILRP 547


>gi|294012342|ref|YP_003545802.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
 gi|292675672|dbj|BAI97190.1| type II secretory pathway component PulD [Sphingobium japonicum
           UT26S]
          Length = 726

 Score = 57.1 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/340 (10%), Positives = 78/340 (22%), Gaps = 151/340 (44%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGG------- 243
              +QV ++  I E+     K++G Q  I  + +G + +  ++     ++  G       
Sbjct: 357 TRREQVLVEAIIVEISDAAAKKLGVQFLIGSTKTGFAATNYSNASPNILTLAGAIAADRL 416

Query: 244 --------------------------------------------DFSVKGVLDRFSFETV 259
                                                             +     F  +
Sbjct: 417 GETTTTVVAPDGTRTETRTRENGDLANTLQQAAVDSLMNATGGFGGVATSLGRNGIFGAI 476

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS-----STGATSVTTHDYGV 314
           ++A++  T    L+ P++  +  Q AS   G Q    T  +          +V   D G+
Sbjct: 477 INAVKSDTDSNILSTPSVMTLDNQKASILVGQQVPVTTGEALSQNFDNQFRTVQRQDVGI 536

Query: 315 VLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSY----------------------- 351
            L   P + + G I L ++ EVS     V+  +                           
Sbjct: 537 KLEVKPQINTGGAIKLFLKQEVSSVAGPVSNNNSDLIINKREIETTVTVDDGEILALGGL 596

Query: 352 -------------------------RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
                                    + R                                
Sbjct: 597 LDDNERKTIERIPLLSDIPGLGELFKSR-------------------------------- 624

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426
                            +R +T + +   P +++      
Sbjct: 625 ---------------SKSRTKTNLMVFIRPTILRSKEDAQ 649


>gi|322834629|ref|YP_004214656.1| type II and III secretion system protein [Rahnella sp. Y9602]
 gi|321169830|gb|ADW75529.1| type II and III secretion system protein [Rahnella sp. Y9602]
          Length = 482

 Score = 57.1 bits (136), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/189 (13%), Positives = 56/189 (29%), Gaps = 13/189 (6%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            Q  +   I  + ++ L++ G   +++    G S              GG     G    
Sbjct: 252 RQFVVTYKIFTLNKEKLEEYGAGLNMSYIDGGSSVVIDTSMMDML--GGGMTVAGGADRA 309

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTS---------GGQHLYKTVSSSTGA 304
            S +  L+AL   T  + L   +    +                   + + K        
Sbjct: 310 LSIDAKLNALYSLTGSKVLQSGSFVTRNNTPIPLNMTNSQHYVSGRTRTVNKDSGDEDVE 369

Query: 305 TSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVEL 362
                   G     TP V++ GR+ +      S+       +   +P+    +   +  +
Sbjct: 370 IETAEIITGTSFIITPRVMTDGRVEVTSGFTKSQLNSIDVFDTVQLPNVTTTEMFNSTAV 429

Query: 363 PSGGTIVLA 371
             G  +++A
Sbjct: 430 NPGSLLMVA 438


>gi|171318753|ref|ZP_02907894.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MEX-5]
 gi|171096069|gb|EDT40997.1| type II secretory pathway component PulD-like protein [Burkholderia
           ambifaria MEX-5]
          Length = 534

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 84/276 (30%), Gaps = 40/276 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS---KS 229
             + A  +  K++   N     QV + V   ++  +   Q G    +  ++        +
Sbjct: 267 DTKEAADNIGKLLKQENAISTRQVAITVRTIQIALNRGSQAGMNADVVFNAMHAGLARYA 326

Query: 230 FAADFGGKFVSEGGDFSVKGVLDRFSF---ETVLHALERATAIRTLAEPTLTAISGQSAS 286
            +        + GG   V  +     F     V++AL +          T   ++G   S
Sbjct: 327 ISFTSPTSLATGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVS 386

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  SS   T+ +    G+          ++  P V    +I L    +
Sbjct: 387 VASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 446

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
            S+      +    S + ++            D T+ L  G TIVL   +          
Sbjct: 447 SSKLNGPFTSAGAGSGQTQQQIQLAHTVGTKDDQTIALSDGQTIVLYGAITDQADSTTNT 506

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           GI  +              +N+ +T   I     +V
Sbjct: 507 GIAGI-----------TGSWNKAKTFQIIMLKATVV 531


>gi|315121901|ref|YP_004062390.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495303|gb|ADR51902.1| hypothetical protein CKC_00755 [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 206

 Score = 55.9 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 29  IKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTM 87
             +                K+I I + + I+L+      +V++ +    DV+     +++
Sbjct: 86  ATKPRTTNTPSPQPTTNDEKRIRIAIGQSIVLKFDSLPSEVIIGNDQITDVLALEKEKSI 145

Query: 88  YLFGKNVGQANVILIGHDGKQMLNLDILI 116
            + GK  G  N+I++G   K +L  DIL 
Sbjct: 146 VITGKKSGLTNIIVLGAGNKVLLETDILS 174


>gi|218780600|ref|YP_002431918.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761984|gb|ACL04450.1| hypothetical protein Dalk_2758 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 351

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/171 (16%), Positives = 54/171 (31%), Gaps = 32/171 (18%)

Query: 254 FSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYG 313
              E  L+A E    +     P++  +S +      G   L   V       S       
Sbjct: 202 PDLEAALYAAENRNELMMARRPSVKTLSNEEVLIKHGWDILIDPVQEVGSLGSADYDSMD 261

Query: 314 VVLHFTPTVLSPGRIGLRIQTEV------SEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           + LH TP ++    I + +  E       S+     N+G+M           +E+  G T
Sbjct: 262 ITLHATPRIIRNEHIFMNLSVETIWYLNASDHGKYNNSGEMG----------IEVNQGET 311

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           I+++G+      + +                       +E E  +  TP +
Sbjct: 312 IIISGITLPSSIKEETE----------------RGEFEDEREFLVFITPTI 346


>gi|327543373|gb|EGF29799.1| type II and III secretion system protein [Rhodopirellula baltica
           WH47]
          Length = 376

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 1/122 (0%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV L+  I  V  D   Q G          G  +   +  G     E     +  +   
Sbjct: 255 PQVVLEAIICVVSPDSGFQFGLDWQHAVEMDGVKELSLSASGLALNGELSQAGLDAIFSD 314

Query: 254 F-SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           F +    +  L     +   A P + A  G+ A+     +  +      +   +      
Sbjct: 315 FGNTSAFVRLLSEKGYLTIRATPHVMAKDGEQANIAINRETFFSVQPPGSTGNNSVFFQQ 374

Query: 313 GV 314
            +
Sbjct: 375 NI 376


>gi|108763383|ref|YP_628353.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
 gi|108467263|gb|ABF92448.1| serine/threonine kinase family protein [Myxococcus xanthus DK 1622]
          Length = 478

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 2/104 (1%)

Query: 5   QRTFFTMMSI-FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVP 63
           +R    +     L      + K   + +++AA      +       I + +  V  L VP
Sbjct: 365 RRGILALAGAGSLVVLGVLLWKPSFLFQSDAATPRAESLGRMAASLIVLRVGDVHELAVP 424

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGK 107
             +Q + V +P+  +V V     + L GK  G  ++I   H G+
Sbjct: 425 G-LQRIAVGEPSLVEVTVPRQGVVRLKGKEEGSTDLITWSHAGE 467


>gi|8896026|gb|AAF81209.1|AF247502_4 PilNa [Salmonella enterica subsp. enterica serovar Dublin]
 gi|7274588|gb|AAF14814.2| PilNa [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|32454458|gb|AAP83030.1| PilNa [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 277

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/120 (15%), Positives = 35/120 (29%), Gaps = 6/120 (5%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGD------FSV 247
            QV L V +  V     +Q+G   +I   S   + +   +  G   +           + 
Sbjct: 132 RQVRLNVQVLSVSTSRKEQLGLDWNIVYKSLRSAGASLNNVSGDITNATSASVSILDSAT 191

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
                      ++ AL     +  +        +          Q +Y   SS+T  T V
Sbjct: 192 GSAAKFAGSSLLIKALSEQGDVSVVTSQGSVTTNLTPVPIQMADQTVYVAQSSTTTTTDV 251


>gi|254513511|ref|ZP_05125576.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
 gi|221532515|gb|EEE35511.1| hypothetical protein RKLH11_4189 [Rhodobacteraceae bacterium KLH11]
          Length = 496

 Score = 55.1 bits (131), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/242 (17%), Positives = 79/242 (32%), Gaps = 29/242 (11%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + + V   +  +     +G + S  G+    + +  A  G    +   DF          
Sbjct: 271 IEIAVYFIDTSKSDTFAVGLEGS--GTHGAIAGAIGAITGNGIATIANDFGSINFQSLAE 328

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTT--HDYG 313
             +V+          T+A+    A      S     +      S+   +TSV T   D G
Sbjct: 329 NSSVVD----YRLTSTIAQSGTIAPISLPRSQNYVSKTTTTPDSNGNVSTSVETATIDTG 384

Query: 314 VVLHFTPTVLSPGRIGLRIQ------TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
           + +H  P ++   RI L +       TE+     G +   +P    R       L  G T
Sbjct: 385 ISIHALPRLVQNNRIHLSLTLIQNDLTELESFESGGSTVQLPKVDQRMILNDNILAPGET 444

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGAL-FRNSRFNR----EETEIFIAATPFLVKPV 422
           +V +G  +D   +   G+         G   F           ++  + +   P ++ PV
Sbjct: 445 LVFSGYEQDKATRSNTGV---------GRARFLGLGGRARGGVDKIRMVVLVRPAII-PV 494

Query: 423 AM 424
           A 
Sbjct: 495 AG 496


>gi|318606999|emb|CBY28497.1| general secretion pathway protein D [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 93

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/35 (25%), Positives = 19/35 (54%)

Query: 389 SKIPILGALFRNSRFNREETEIFIAATPFLVKPVA 423
             IP +G LFR S+   E++ + +   P +++  +
Sbjct: 2   GDIPFIGGLFRQSKEKIEKSNLILFIRPTILRETS 36


>gi|170740625|ref|YP_001769280.1| hypothetical protein M446_2388 [Methylobacterium sp. 4-46]
 gi|168194899|gb|ACA16846.1| conserved hypothetical protein [Methylobacterium sp. 4-46]
          Length = 158

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 34/77 (44%)

Query: 49  KISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQ 108
            + + ++   I+++P     V+V +P  ADV +     + L GK+ G  N+I +   G  
Sbjct: 36  TVVVSVDNAKIIRLPERTATVVVGNPIIADVSLQRNGLVILTGKSFGTTNLIALDGSGAM 95

Query: 109 MLNLDILIERDIAHLEM 125
           +    I ++     +  
Sbjct: 96  LAESFISVQAATTSVVT 112


>gi|187921869|ref|YP_001893458.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
 gi|187720307|gb|ACD21529.1| conserved hypothetical protein [Burkholderia phytofirmans PsJN]
          Length = 598

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 84/274 (30%), Gaps = 32/274 (11%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS-----ITGSSSGP 226
              + A   ++ ++N         V+  + + ++ R    Q+G            +  G 
Sbjct: 317 TDTKDAVDRAEGIINFHRALLNKLVSYHIRVVQITRSNAGQLGVDWQALLTKALNNVPGF 376

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S  +       + G   +          + V++A+ +     +  +  +   +  S  
Sbjct: 377 IISSTSPLTLTTAAAGSLTTKITSGQFSGTQAVVNAIAQLGYTVSTDDIPMQVQNRHSGY 436

Query: 287 FTSGGQHLYKTVSS----------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           + +  Q  Y + ++           T   + +    G+      TV     I + +  + 
Sbjct: 437 YDNVNQFSYVSQTTPAASTVGGTGGTPGITTSMDSVGLKFLIYGTVTDDNNISISVSMDN 496

Query: 337 SEPV---------IGVNAGDMPSYRVRK--ADTTVELPSGGTIVLAGLLKDDIQQLKEGI 385
           S             G N   +      K  A T   + +GG IVLA   +  +Q  +   
Sbjct: 497 SALNGPIQTFTSGQGANQQSVQEVDKNKYGASTDGIVRNGGIIVLAAHDRTQLQSQRSA- 555

Query: 386 PLLS-KIPILGALFRNSRFNREETEIFIAATPFL 418
             L  KIP+L     +   +   T      +  +
Sbjct: 556 --LGYKIPMLAG--GSVNDSDSRTTTLFVISASI 585


>gi|294784350|ref|ZP_06749641.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
 gi|294487922|gb|EFG35277.1| general secretion pathway protein D [Fusobacterium sp. 3_1_27]
          Length = 407

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/141 (12%), Positives = 45/141 (31%), Gaps = 9/141 (6%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAAD-----FGGKFVSEGGDFSV 247
             QV +   I ++  ++ +++GF      +     ++          G   V    +   
Sbjct: 267 PKQVKITSQILDISNNLFEELGFNWVYKQNVESQERNSLTAMILGKAGLNGVGSTVNIVR 326

Query: 248 KGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS----STG 303
           +           ++ LE    +   + PTL   SG+   F    + +    +        
Sbjct: 327 QFHNKSDVLSVGINLLEATNDLVVSSVPTLMIASGEEGEFKVTEEVVVGIKTHREDKKDR 386

Query: 304 ATSVTTHDYGVVLHFTPTVLS 324
            +     + G+++   P ++ 
Sbjct: 387 YSEPIFKEAGLIMKVKPFIVK 407


>gi|330947449|gb|EGH48078.1| type II and III secretion system protein [Pseudomonas syringae pv.
           pisi str. 1704B]
          Length = 134

 Score = 54.4 bits (129), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 25/79 (31%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
             +   + I       ++  V +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 2   AERPAAVEIDQGIQQEVRSAVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 61

Query: 104 HDGKQMLNLDILIERDIAH 122
                     + +      
Sbjct: 62  ACASAPRQSMVFVRGRATT 80


>gi|220922775|ref|YP_002498077.1| hypothetical protein Mnod_2823 [Methylobacterium nodulans ORS 2060]
 gi|219947382|gb|ACL57774.1| conserved hypothetical protein [Methylobacterium nodulans ORS 2060]
          Length = 161

 Score = 54.4 bits (129), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 37/89 (41%)

Query: 37  INISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQ 96
           +  +         + + ++   I+++P     V+V +P  ADV +     + L GK+ G 
Sbjct: 27  VAQALEAGADPGMVVVSVDNAKIIRLPERTATVVVGNPIIADVTLQRNGIVILTGKSFGS 86

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEM 125
            N+I +   G  +    I ++   + +  
Sbjct: 87  TNLIALDAAGTMLAESFISVQAATSSVVT 115


>gi|325274962|ref|ZP_08140964.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
           TJI-51]
 gi|324099903|gb|EGB97747.1| PilN family type IV pilus biogenesis protein [Pseudomonas sp.
           TJI-51]
          Length = 120

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 10/116 (8%)

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVEL 362
           T   G  ++  P V+    + LR    +S      +   G N  ++P    R     V+L
Sbjct: 7   TVTSGFNMNLLPYVMPGKELLLRYSINLSALKQIRQVSSGDNTIEIPEVDNRIFSQMVKL 66

Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            SG T+VL+G  +      K G+   +   ++G    + + +  +  I +  TP +
Sbjct: 67  RSGETLVLSGFEQSVDNGSKAGV-GSASNWLMG---GSLKRDNSKDVIVVLITPIV 118


>gi|197336519|ref|YP_002157477.1| lipoprotein, putative [Vibrio fischeri MJ11]
 gi|197315222|gb|ACH64670.1| lipoprotein, putative [Vibrio fischeri MJ11]
          Length = 540

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 18/235 (7%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++  + E+  ++  +     +    S+  + +  +         G   + K   D     
Sbjct: 307 IQADVYEIIWEVNDEKQVSWTAAFESASFALNAMSPTVVSDSGLGSITATKIGGDFDGSN 366

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST--------GATSVTT 309
            +   L    ++ +    ++   +       S       +    T         +T+   
Sbjct: 367 IIGKFLNENASVYSRITNSIKTKNNIPTQLISSQDRAIVSGREVTIDSNGFAQQSTNTKL 426

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTE---VSEPVIGVNAGDMPSYRVRKADTTVE---LP 363
            + G  +   P + S G+I + +      + +     +  DM      K   T+    + 
Sbjct: 427 INEGFNITTRPRLTSDGKIDMEVIVNTKSIGDIKTFGSEEDMVQLEETKQHGTISGIPIR 486

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           SG ++VL    +D  +       L   +P            R ++ + +   P +
Sbjct: 487 SGESVVLNAYERDLTRADLAS--LEKNLPW--WTGGGKSNKRYKSSLIVMVKPVI 537


>gi|317485728|ref|ZP_07944598.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
 gi|316923010|gb|EFV44226.1| ribose-5-phosphate isomerase [Bilophila wadsworthia 3_1_6]
          Length = 177

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/171 (15%), Positives = 47/171 (27%), Gaps = 23/171 (13%)

Query: 257 ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQH-------LYKTVSSSTGATSVTT 309
              L AL        L        S Q     +  +H       L  +  + T   +   
Sbjct: 9   SGTLKALREWGRATQLTSAGGLLTSNQPLPVLAIKRHAYLAGMSLSTSDYNQTSEITPGE 68

Query: 310 HDYGVVLHFTPTVLSPGRIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELP 363
              G  +   P +L+  R+ L+    +S      E         +P    R      ++ 
Sbjct: 69  VTTGFAMTIIPHILADRRVILQYNITLSALDDMQEIDREEVYVQLPQVSTRSFAQRSKMK 128

Query: 364 SGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            G T+VLAG  +                   G L      +  +T + +  
Sbjct: 129 MGQTLVLAGFEQSRQTANNA----------FGILNTGRDADYGKTLLVVTI 169


>gi|229592009|ref|YP_002874128.1| secretory protein [Pseudomonas fluorescens SBW25]
 gi|229363875|emb|CAY51352.1| secretory protein [Pseudomonas fluorescens SBW25]
          Length = 481

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/202 (14%), Positives = 61/202 (30%), Gaps = 23/202 (11%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
           +K++  L+I     + + + + ++ RD LK++G                         + 
Sbjct: 247 QKLVAELDIPKRS-IEVSLWLVDLERDELKKLGMDWG-------------------DDTN 286

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
                V   +D       + ALER         P +       A F              
Sbjct: 287 TSTTRVLAPVDDSHLMASIGALERRRRATVATLPVILTQENVPAVFQDNHTFYMPPP--G 344

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTV 360
           +  T      YG  +   P      +I +R++ +    +      +  +   R   ++ V
Sbjct: 345 SDRTDWKPVRYGTQVSVLPRFAEANQIEMRLEVQDGRQMSEAPGREKNTAVGRVGVNSVV 404

Query: 361 ELPSGGTIVLAGLLKDDIQQLK 382
            LP G  + L    +    + +
Sbjct: 405 RLPPGRRLWLGAFNRKSEGRGR 426


>gi|298155844|ref|YP_003717670.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
           1392/75]
 gi|156121667|gb|ABU50043.1| LngD [Escherichia coli]
 gi|297374441|emb|CBL93503.1| putative exported pilus biosynthesis protein [Escherichia coli ETEC
           1392/75]
          Length = 492

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/204 (13%), Positives = 54/204 (26%), Gaps = 14/204 (6%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
             V+         Q  L   I  + +  ++++G   +++  + G S              
Sbjct: 244 DNVLKKYREDNSRQFVLTYKIFTIDKKKVRKLGAAANLSYLNGGTSIGIDTSLLSSLSGA 303

Query: 242 GGDFSVKG---VLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
                          F+    + A+ + T    L   T    +             Y + 
Sbjct: 304 TFGRDFIVPVENTQNFNITGKIEAIYQLTGKNVLQSGTFITRNNVPVPVNLTQTQNYISG 363

Query: 299 SS---------STGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN--AGD 347
            +         S           G     TP VLS G I +             N  +  
Sbjct: 364 RTQTTNSLTSVSDTTIETDKVITGSSFILTPRVLSDGSIEVSSAFTKKTLNSIENFESVQ 423

Query: 348 MPSYRVRKADTTVELPSGGTIVLA 371
           +P+    +   T  L  G  +++A
Sbjct: 424 LPNVSTTEMFNTSVLKPGTLMMVA 447


>gi|56550580|ref|YP_161646.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
 gi|94152701|ref|YP_582103.1| hypothetical protein Rmet_6294 [Cupriavidus metallidurans CH34]
 gi|56410286|emb|CAI30168.1| hypothetical protein RMe0022 [Cupriavidus metallidurans CH34]
 gi|93359067|gb|ABF13153.1| Type II secretory pathway, component PulD [Cupriavidus
           metallidurans CH34]
          Length = 600

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/320 (13%), Positives = 109/320 (34%), Gaps = 40/320 (12%)

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE----TFLSQSGRNQYANSSSKK 183
            +  A +   ++  +D   L G+ ++I  +   V  +E    T +      + A  ++ +
Sbjct: 279 AQIDAAAKAEIKEQND---LEGVKKSILPAMTMVGSAELNPATGVLTLRDTKEAVDAADE 335

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSIT-----GSSSGPSKSFAADFGGKF 238
           ++          VTLK  + ++      + G   ++       +  G + +  +      
Sbjct: 336 IIRKQIAIYSRMVTLKFQMIDLTVSDAGEAGVDWNVVLTKALQNLPGFTVNALSPATLVS 395

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV 298
            + GG             + +++AL++   + +     ++  +     + +     Y + 
Sbjct: 396 STAGGVGLGITSGGFNGTQAIVNALKQYGTVTSGVTIPVSMRNRHGFQYNNRRTFSYASG 455

Query: 299 SSSTGATSV----------TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV------IG 342
           S+    T+           +T   G  L       S   + L I  + S+          
Sbjct: 456 STPATTTAGGTGGIPGIITSTATVGFKLAAYADATSRDDVNLTIALDQSKQDGPLEKFTS 515

Query: 343 VNAGDMPSYRVRKA------DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSK-IPILG 395
            +  +  S +             + + +G T+++A L +DD    +     L + +P+L 
Sbjct: 516 GSGNNQQSVQTINIVGKGIPKQDIIVRNGQTVLMAALDQDDTANTRRT---LGESLPML- 571

Query: 396 ALFRNSRFNREETEIFIAAT 415
            L  +   ++  T   + AT
Sbjct: 572 -LGGSQTVSKTRTFTLLLAT 590


>gi|330814465|ref|YP_004362640.1| type II secretory pathway component PulD-like protein [Burkholderia
           gladioli BSR3]
 gi|327374457|gb|AEA65808.1| type II secretory pathway component PulD-like protein [Burkholderia
           gladioli BSR3]
          Length = 531

 Score = 54.0 bits (128), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/276 (15%), Positives = 81/276 (29%), Gaps = 40/276 (14%)

Query: 173 RNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA 232
             + A  +  K++N  N     QV + V   ++  +   Q G    +  ++     +  A
Sbjct: 264 DTKEAADNIGKLLNHENAISTRQVAITVRTLQIALNKGSQAGANADVVFNAMHAGLARYA 323

Query: 233 DFGGKFVSEGGDFSVKGVLDR------FSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
                  S        GV              V++AL +          T   ++G   +
Sbjct: 324 VSFTSPTSLASGGGSVGVSVLRPDAPFSGTNAVVNALNQYGRTVQDNTMTKMTLNGLPVA 383

Query: 287 F--TSGGQHLYKTVSSSTGATSVTTHDYGVV---------LHFTPTVLSPGRIGLRIQTE 335
                   +L  T  SS   T+ +    G+          ++  P V    +I L    +
Sbjct: 384 IASFKSDDYLRSTTPSSGSLTATSGGVPGLTPGTITTGDFVNVLPAVNDHNQIVLAYWAD 443

Query: 336 VSEPVIGVNAGDMPSYRVRKA-----------DTTVELPSGGTIVL-AGLLKDDIQQLKE 383
            S+      +    S + ++            D T+ L  G TIVL   +          
Sbjct: 444 SSKLNGPFTSVGAGSGQTQQQIQLAHTVGSKDDQTIALSDGQTIVLYGAITDQADSTTNA 503

Query: 384 GIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           G   L              +N+ +T   I     +V
Sbjct: 504 GFAGL-----------TGTWNKSKTFQVIMLKATVV 528


>gi|37522852|ref|NP_926229.1| hypothetical protein gll3283 [Gloeobacter violaceus PCC 7421]
 gi|35213854|dbj|BAC91224.1| gll3283 [Gloeobacter violaceus PCC 7421]
          Length = 234

 Score = 53.2 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 69/232 (29%), Gaps = 43/232 (18%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
             Q+   + I E+    L+ +                  A +G +  +     +      
Sbjct: 44  SQQIVFSIQIIELDGTGLQTL----------------SKAIYGTQPTTGTPASAENANRL 87

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS-TGATSVTTHD 311
           R +    + A       R + +  LT  SG+ A F S     +       +   + +T  
Sbjct: 88  RRAIFEQVRA----GRGRLVVDTELTVGSGERAGFDSQLDMNFTLAPQDRSKPPTFSTVR 143

Query: 312 YGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK-ADTTVELPSGGTIVL 370
            G  L F P VL  G I  +I+ + S           P    R    +T+      T+  
Sbjct: 144 AGNRLEFEPAVLPDGNILTKIRVDASVAAARDRNTGRPIDITRSSIYSTLTFQPNQTVAF 203

Query: 371 AGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPV 422
                 ++  L   +P    IP               TE  I  TP LV   
Sbjct: 204 G-----NLTSLGTSVP----IP------------ANRTEQIILITPRLVSAT 234


>gi|171911831|ref|ZP_02927301.1| probable penicillin resistance regulatory protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 711

 Score = 53.2 bits (126), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 81/298 (27%), Gaps = 67/298 (22%)

Query: 182 KKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            ++++ L+     QV L+    E              +            A    +    
Sbjct: 295 DQLLDQLSAHAPLQVLLETRWIE--------------LLAPPEEGGPVSTALATLQEKRT 340

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS 301
               + + +L    ++ ++    +   +  ++ P++T   GQ A      +      ++ 
Sbjct: 341 ANGRANEAILSDPDYQNIIRLFSQQKGVHLVSNPSVTTRMGQKAVVEVIREVRRPGEAAK 400

Query: 302 TGATSVTTHDYGVVLHFTPTVLSPG---RIGLRIQT------EVSEPVIGVNAGDMPSYR 352
                   H  G+   F P   + G   ++ +  +        ++E    +  G +P+  
Sbjct: 401 GLNDD---HFVGIQNSFEPVRTADGKKVQVSMTAKLRRLAGRSIAESNALIKDGILPAGE 457

Query: 353 VRKADTT---VELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETE 409
              A T    V L  G T+ +                    I              +   
Sbjct: 458 RILAFTNSAEVSLTDGETVCM-------------------DI----------GTAEDHRR 488

Query: 410 IFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKG 467
           + +  T  +VKP             +  +D +     +         AS  +     G
Sbjct: 489 LLLFVTSKIVKPAEA---------LTKPEDLERELNRQSTPGREHPGASRAKPVAVSG 537


>gi|253997315|ref|YP_003049379.1| NolW domain-containing protein [Methylotenera mobilis JLW8]
 gi|253983994|gb|ACT48852.1| NolW domain protein [Methylotenera mobilis JLW8]
          Length = 282

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/228 (11%), Positives = 62/228 (27%), Gaps = 16/228 (7%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSIT 220
             +E  L         + ++  + N L +  + +   +V           +         
Sbjct: 43  RFAEEVLPTIQAVIGDHGTASAIQNQLIVRTDSRTMAEVEQTISTLDTARENFTISVKRQ 102

Query: 221 GSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAI 280
             SSG +++       +  +            R   +  +   +  T  +  ++  +   
Sbjct: 103 NISSGSNRNSTIRGRTRIGNATIQTGNDARGGRDGIQIGIE--DNQTNAQQSSQQFIRVT 160

Query: 281 SGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQT 334
            G  A  + G    Y           +    S    D G         +   +I L I  
Sbjct: 161 DGAPAYISVGESIPYTNEWVVLTRRYAVRQVSTQFVDIGTGFTVRARSI-GSQIELEITP 219

Query: 335 EVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
             S                 +  +TV +  G  + + G+++D  +  +
Sbjct: 220 TFSRLQQDG------RIEFEQLSSTVRVQRGEWVNIGGIMQDKDEVSR 261


>gi|197105562|ref|YP_002130939.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
 gi|196478982|gb|ACG78510.1| hypothetical protein PHZ_c2099 [Phenylobacterium zucineum HLK1]
          Length = 489

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 35/280 (12%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + ++  +    R      G     + +           +GG+     G  +V      +S
Sbjct: 222 ILIEAFLIRDTRSANFNEGVNLLESLALQFEGTLVNYSYGGEDEGTDGQVTVTLPAVTYS 281

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
                  L     +   A P + A  G+++ F  GG  L   +S  +        D G+ 
Sbjct: 282 LNLASRDLS---RVSLEASPVVLARQGKTSKFLEGGSVLIVPLSDDSDPVE---RDVGIS 335

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGVN-----AGDMPSYRVRKADTTVELPSGGTIVL 370
           L  TP  +    + L +  E+S               +      + + +  +P G  +V+
Sbjct: 336 LEVTPERIGEHDVDLTVALELSNITGQSVNNAGRGASLLQTDKSRVEASARVPFGKAVVV 395

Query: 371 AGLLKDDIQQLKEG------IPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
                   ++ + G      +P LS                   ++    +         
Sbjct: 396 GSTGSLTRRKTRTGSLTAAPVPGLS----------TKGRGASRRDVLALISVR-----RA 440

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
            D S P              F  V        A   +  +
Sbjct: 441 EDDSGPA---FDAAAVAGRLFGEVLPAPAAYGARPSDTPD 477


>gi|320174025|gb|EFW49195.1| General secretion pathway protein D [Shigella dysenteriae CDC
           74-1112]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492


>gi|289675698|ref|ZP_06496588.1| type II and III secretion system protein [Pseudomonas syringae pv.
           syringae FF5]
          Length = 133

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 12/79 (15%), Positives = 24/79 (30%)

Query: 44  IGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIG 103
                 + I       ++  V +  + V DP  ADV V+      L G   G  ++++  
Sbjct: 5   AAMPAAVEIDQGIQQEVRSVVPITRIAVGDPKIADVHVNGTDGFLLTGVAQGTTSLMVWT 64

Query: 104 HDGKQMLNLDILIERDIAH 122
                     + +      
Sbjct: 65  ACASAPRQSMVFVRGRATT 83


>gi|320184381|gb|EFW59193.1| General secretion pathway protein D [Shigella flexneri CDC 796-83]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492


>gi|332091465|gb|EGI96550.1| general secretion pathway protein D [Shigella boydii 3594-74]
          Length = 493

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 37/178 (20%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGS--------------------------------SSGPSKSFAADFG 235
                 G Q +   +                                S   + +   D  
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAAISQAKPQKGSTVISENGATTINPDTN 434

Query: 236 GKFVSEGGDFSVKGVLD----RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTS 289
           G   +     S          +  +  ++ A++  ++   L+ P++T +  Q A F  
Sbjct: 435 GDLSTLAQLLSGFSGTAVGVVKGDWMALVQAVKNDSSSNVLSTPSITTLDNQEAFFMV 492


>gi|170749896|ref|YP_001756156.1| hypothetical protein Mrad2831_3496 [Methylobacterium radiotolerans
           JCM 2831]
 gi|170656418|gb|ACB25473.1| conserved hypothetical protein [Methylobacterium radiotolerans JCM
           2831]
          Length = 164

 Score = 52.4 bits (124), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 36/83 (43%)

Query: 35  AVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNV 94
                +  +      +++ ++   +L++P     V+V +P  A+V       + L GK+ 
Sbjct: 18  TGAAAAAGQPDLLPVVTVLVDNAKVLRLPEKTSTVIVGNPIIAEVTPQKNGVLVLTGKSF 77

Query: 95  GQANVILIGHDGKQMLNLDILIE 117
           G  N+I + + G  +    I +E
Sbjct: 78  GSTNLIALDNGGAMIAETTIRVE 100


>gi|8896027|gb|AAF81210.1|AF247502_5 PilNb [Salmonella enterica subsp. enterica serovar Dublin]
 gi|7274591|gb|AAF44784.1| PilNb [Salmonella enterica subsp. enterica serovar Typhi str. Ty2]
 gi|32454459|gb|AAP83031.1| PilNb [Salmonella enterica subsp. enterica serovar Paratyphi C]
          Length = 129

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI--------GVNAGDMPSYRVRKADTTV 360
               G  +   P +   G + L++   +S+P          G +  +MP  ++R      
Sbjct: 11  MMTTGFNMTLLPLIQDGGDVQLQVAFNLSDPPTIRNFTSKDGNSYIEMPYTKLRSLSQKT 70

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            L +G  +VL G  + + +  K G        +LG        +   + + I  TP L
Sbjct: 71  NLRAGQALVLTGFDQSNTRMTKNGTFTPGNF-LLG---GGRDGDDSRSTLVIIITPEL 124


>gi|281355410|ref|ZP_06241904.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318290|gb|EFB02310.1| hypothetical protein Vvad_PD3516 [Victivallis vadensis ATCC
           BAA-548]
          Length = 355

 Score = 52.1 bits (123), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/347 (13%), Positives = 110/347 (31%), Gaps = 42/347 (12%)

Query: 98  NVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQ-- 155
           NV++      + +  D+    D+A +   +   +    +     +    + G    I+  
Sbjct: 15  NVVVFDDLKDKPIFADV-SGCDLADVLDLITWLL---GVEWVERAGQYYIGGNQSKIEVL 70

Query: 156 -------DSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRR 207
                    ++    +   ++     Q      KK+ + L    E  V L ++ + EV  
Sbjct: 71  PSLGIDSKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVY 130

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267
           D   Q+G     +   +   ++   +      +              S    +   +   
Sbjct: 131 DDRFQVGLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVI 178

Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVL 323
           + R + +  +  +SG       G +      S+S     V     T   G+++  +    
Sbjct: 179 STRYVIDTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHA 238

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLK 382
               +      E S PV  +         + K  T V++      +LA +        ++
Sbjct: 239 GSAWV-FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIE 291

Query: 383 EGIPLLSKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425
           +G+P L ++P +G LF        + + ++         + KP+   
Sbjct: 292 QGVPFLCRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 338


>gi|153800448|ref|ZP_01955034.1| CofD [Vibrio cholerae MZO-3]
 gi|124124074|gb|EAY42817.1| CofD [Vibrio cholerae MZO-3]
          Length = 486

 Score = 51.7 bits (122), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/338 (10%), Positives = 90/338 (26%), Gaps = 37/338 (10%)

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDS---QRA 160
            +   ++                 ++F    +I     +    + G   T  +S      
Sbjct: 147 DENNVLVASVYHRYTIALDYYGENKKFETGMDISGNEATSGSGITGKSETSFESSFWDDV 206

Query: 161 VELSETFLSQS-------------GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
             + E +L+                      +   K++       + Q  +   I  + +
Sbjct: 207 ETIVEHYLTSGQYSLIKDSSLIAINARPSEFAEVNKILKKFKEDNQRQFVVTYKIFTLDK 266

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF-SVKGVLDRFSFETVLHALERA 266
              + +G   +++    G +            S         G   + +    L AL + 
Sbjct: 267 SKEQSLGGGVNLSHQVPGTTVGITTGMLSSLGSGINFDRQFYGDGKKLNMTGQLEALFKL 326

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS---------STGATSVTTHDYGVVLH 317
           T  + L   +    +             + +  +         +  +   +    G    
Sbjct: 327 TGSKLLQSGSFITRNNSPIPLNLTNSKYFVSGRTQTKNDNNTVTDSSVETSQIVTGTSFI 386

Query: 318 FTPTVLSPGRIGLRIQTEVSEPVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375
            TP VLS G+I +                +  +P+    +   T  +  G  +++A    
Sbjct: 387 LTPRVLSDGKIEVLSGFTKKTLNSIDLFESVQLPNVTTTEMFNTSTVTPGSLLMVARYDS 446

Query: 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIA 413
            +  + + G  +L           ++  +   T + + 
Sbjct: 447 AEESE-RNGYEVLGA--------THADNSNNNTVVMVV 475


>gi|255764483|ref|YP_003065151.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
 gi|254547834|gb|ACT57211.2| hypothetical protein CLIBASIA_03125 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 135

 Score = 51.3 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 47  GKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSP-RTMYLFGKNVGQANVILIGHD 105
             +I I + + +ILQ  V  + V+V D    DV+     +T+ + GKN+G  N+I++GH+
Sbjct: 32  SNRIRIAVGQSLILQFDVLPKQVIVGDDKIVDVLALEKEKTVVITGKNLGSTNIIVLGHN 91

Query: 106 GKQMLNLDILI 116
              +L+ +I  
Sbjct: 92  NDILLDTEIAT 102


>gi|217077117|ref|YP_002334833.1| secretin and TonB N terminus short domain protein [Thermosipho
           africanus TCF52B]
 gi|217036970|gb|ACJ75492.1| secretin and TonB N terminus short domain protein [Thermosipho
           africanus TCF52B]
          Length = 360

 Score = 50.9 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 68/276 (24%), Gaps = 39/276 (14%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV-----TLKVT------- 201
               + A ELS+    +       +SS   +     I    Q+      L V        
Sbjct: 106 PLRYKTASELSKVLPKELKEYILYSSSEDSITVFAPIPVASQIANIVSILDVKKKSYTAN 165

Query: 202 --IAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
             I +V    LK                    A F         +       +   F+ +
Sbjct: 166 IKIIDVSESYLKSF-LLKINYSQERLNDLLSGAIFSIPLYGNYLNLLFSSTTENKDFDLI 224

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
                    I+ L+              +                 S    +  +    T
Sbjct: 225 Y-----DGNIKMLS----------GVKSSLRTSKKVLVDEIVDNKISKKAVESNISFELT 269

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
           P  L        I   ++   IG +          +  T V +      V+        +
Sbjct: 270 PYFLKS---SALIDLNINLENIGTDRLG------SQVSTKVPIDFSVPKVIGAYSYLKSE 320

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIFIAAT 415
           +   G+  L  +PI+G LF+ +    E+  I     
Sbjct: 321 RADGGLSFLMDLPIIGNLFKQNFEKHEKRYILFVLR 356


>gi|116249977|ref|YP_765815.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           viciae 3841]
 gi|115254625|emb|CAK05699.1| putative pilus subunit transmembrane protein [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 136

 Score = 50.9 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 49/128 (38%), Gaps = 12/128 (9%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRT 153
            G  N++L+  DG  +L+            E  L      + +RV   +   VL      
Sbjct: 75  FGTTNLVLLDADGNAILD------------ERILVSIDEGNTVRVYRQTQRSVLSCTPNC 122

Query: 154 IQDSQRAV 161
            Q +Q+A 
Sbjct: 123 EQHAQQAA 130


>gi|121610631|ref|YP_998438.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2]
 gi|121555271|gb|ABM59420.1| hypothetical protein Veis_3705 [Verminephrobacter eiseniae EF01-2]
          Length = 586

 Score = 50.9 bits (120), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/246 (14%), Positives = 68/246 (27%), Gaps = 29/246 (11%)

Query: 197 TLKVTI--AEVRRDILKQIGFQHSITGSSSGPSKSFA---ADFGGKFVSEGGDFSVKGVL 251
            + VT     V+     + G   S    S                   +     S+    
Sbjct: 343 MVNVTFDLYSVKTSDADEKGLDWSSVFQSLSRKYGLTFSTPSLSTGATAGSIGASMVWGN 402

Query: 252 DRFSFETVLHALERATAIRTLAEPTLTAISG------QSASFTSGGQHLYKTVSSST--- 302
              + + +L  L +          ++T ++G      + A+     + +    S S    
Sbjct: 403 GTATTKAMLALLNQYGEASQHRPISITTLNGMWDTKSRLATEGYLKETVPGLSSGSGAAG 462

Query: 303 -GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE-----PVIGVNAGDM-----PSY 351
                  T   G      P V +   + LR    +S+      V   +   +     P  
Sbjct: 463 APGLKTDTITTGDQFAVLPYVQNDNTVLLRYSIGLSDLLGMFDVTTGSGATLQKVQTPRT 522

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
               A +T+ L  G   V+ GL +   ++      L   +P++  L    R   +     
Sbjct: 523 ESLNASSTIALAPGEAAVITGLSRLVAKRDDTR--LAENLPLV--LGGTRRLAYQREHFL 578

Query: 412 IAATPF 417
           I     
Sbjct: 579 ILVRAT 584


>gi|297539539|ref|YP_003675308.1| NolW domain-containing protein [Methylotenera sp. 301]
 gi|297258886|gb|ADI30731.1| NolW domain protein [Methylotenera sp. 301]
          Length = 284

 Score = 50.5 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/226 (10%), Positives = 65/226 (28%), Gaps = 16/226 (7%)

Query: 164 SETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKV-TIAEVRRDILKQIGFQHSITGS 222
           +E  L        ++ ++  + N L I    +  +++  I        + +    S   +
Sbjct: 47  AEDILPIIQPLVGSDGTATGMQNHLIIRASPEKMIEIEQIISTLDVERQNLRITVSHQNN 106

Query: 223 SSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG 282
               + + A     +  +     +          +  +      ++IR+     +  + G
Sbjct: 107 LQTNNDNVAVSGRKRIGNVTIGTNKYPRNAADGVQLDIE--NNQSSIRSNGNQFINVMDG 164

Query: 283 QSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEV 336
           + A    G    Y           ++   +    D        P  +   ++ L I   +
Sbjct: 165 ERAFIRVGRSVPYTQEWVTLTQRYTSIQRTTEFADISTGFSVRPRSI-GNQVELEITPRI 223

Query: 337 SEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
           ++                +  T V +  G  + L G ++   +  +
Sbjct: 224 AQL------NQNKYIDFEELSTIVRVNRGEWLDLGGTMQQKDEVSR 263


>gi|213421917|ref|ZP_03354983.1| putative outer membrane secretory protein [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 213

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/121 (14%), Positives = 40/121 (33%), Gaps = 12/121 (9%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQI 213
             D ++   +   + +     +   +   +         +  + + V I +V    + Q+
Sbjct: 105 AADPRQNAVIVRDYAANMAGYRKLITELDQ--------RQQMIEISVKIIDVNAGDINQL 156

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G       S  G   +F           G       + D  +F   L+ALE+++    L+
Sbjct: 157 GIDWGTAVSLGGKKIAFNTGLN----DGGASGFSTVISDTSNFMVRLNALEKSSQAYVLS 212

Query: 274 E 274
           +
Sbjct: 213 Q 213


>gi|241207153|ref|YP_002978249.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861043|gb|ACS58710.1| pilus subunit transmembrane protein [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 136

 Score = 50.1 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 39/86 (45%)

Query: 34  AAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKN 93
           A               + + ++   +L++   V  V+V +   AD  V   +T+ L G++
Sbjct: 15  AVFGISGVSAAADDDMLRVYMDHARVLKLDRPVSKVIVGNAAVADATVADAKTIVLTGRS 74

Query: 94  VGQANVILIGHDGKQMLNLDILIERD 119
            G  N++L+  DG  +L+  IL+  D
Sbjct: 75  FGTTNLVLLDADGNAILDERILVSID 100


>gi|288959939|ref|YP_003450279.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
 gi|288912247|dbj|BAI73735.1| hypothetical protein AZL_a02040 [Azospirillum sp. B510]
          Length = 512

 Score = 50.1 bits (118), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 87/303 (28%), Gaps = 54/303 (17%)

Query: 130 FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLN 189
           F+++ +     V     +   V T   +  A +++++          + +  ++V+    
Sbjct: 164 FLSNRDRFAFTVPQNQAVIDSVMTDLKTLGATDITQSLRGGQVVFSASPTVYREVIQPYI 223

Query: 190 ---IAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG-------------------PS 227
                    V +++ +  +        GF  +                            
Sbjct: 224 DRLHRNMAMVRIQLAVVSLGLTDQSASGFDWNALALQFNRLQSGTTTTTTGTTTVNGTVG 283

Query: 228 KSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASF 287
            + +A      V+     ++ GV   F+    +  L +     T     +  +SG   + 
Sbjct: 284 GTLSAAQPPLSVNISNPGTLLGVSGVFNVAGAISFLSKFGNTDTRQNVEVHTLSGAEVTL 343

Query: 288 TSGGQHLYKTVSSST-----------------------GATSVTTHDYGVVLHFTPTVLS 324
            SG    Y T    T                       G+    T   G+ +  TP   +
Sbjct: 344 RSGQTIPYVTGVGVTAVGGLGTTTAATGNAALNSPGVVGSAQTGTVQTGLTIKLTPHFDA 403

Query: 325 PGRI-------GLRIQTEVSEPVIGVNAG--DMPSYRVRKADTTVELPSGGTIVLAGLLK 375
             +I        L    E  +   G   G    P  + +  +  V + +G T+VL GL  
Sbjct: 404 DNQIVTIDLNLLLNNLIEFRDLNAGNQVGILTQPVTQEQALNDIVRVVAGNTVVLGGLQT 463

Query: 376 DDI 378
           D  
Sbjct: 464 DSR 466


>gi|281355403|ref|ZP_06241897.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
           BAA-548]
 gi|281318283|gb|EFB02303.1| hypothetical protein Vvad_PD3509 [Victivallis vadensis ATCC
           BAA-548]
          Length = 283

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 90/281 (32%), Gaps = 29/281 (10%)

Query: 155 QDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL-KVTIAEVRRDILKQI 213
              ++    +   ++     Q      KK+ + L    E  V L ++ + EV  D   Q+
Sbjct: 5   SKLEQVFPNAVKLVNDKIIAQGTERELKKISDALTSTLERDVALCQLKVIEVVYDDRFQV 64

Query: 214 GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLA 273
           G     +   +   ++   +      +              S    +   +   + R + 
Sbjct: 65  GLDWEKSFEYAVSWENMVKNVHPVTHAA------------MSLAASVQLDQAVISTRYVI 112

Query: 274 EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV----TTHDYGVVLHFTPTVLSPGRIG 329
           +  +  +SG       G +      S+S     V     T   G+++  +        + 
Sbjct: 113 DTQVGILSGSKVELNIGDEIDRPIYSTSEYGNRVLSGYNTQKTGLLIGLSAYHAGSAWV- 171

Query: 330 LRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDD-IQQLKEGIPLL 388
                E S PV  +         + K  T V++      +LA +        +++G+P L
Sbjct: 172 FDASVEHSRPVTDLQ------KTLSKVTTQVKIEDSRPFLLANVSSSGGETNIEQGVPFL 225

Query: 389 SKIPILGALFRNSRFNREETEIFIAA----TPFLVKPVAMR 425
            ++P +G LF        + + ++         + KP+   
Sbjct: 226 CRLPWIGFLFGVYDKVHLQRDFYVCIQLLDRNRVPKPLEPA 266


>gi|89885736|ref|YP_515934.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
 gi|89347734|gb|ABD71936.1| hypothetical protein Rfer_4249 [Rhodoferax ferrireducens T118]
          Length = 483

 Score = 49.4 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 65/418 (15%), Positives = 128/418 (30%), Gaps = 59/418 (14%)

Query: 45  GKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQ------- 96
              +++    ++  +L+       + ++D   AD++  H+  T+ + G  +G        
Sbjct: 76  STSQRMPPVFDQSFVLREQTP---LAITD--VADIIRAHTGLTILINGDAIGSQRIGVDS 130

Query: 97  -ANV-----ILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTV--VLH 148
             ++           G     LD  I+   + +   +        I V         V  
Sbjct: 131 VTSLKSLLDSTTSRFGMTWQYLDDAIQIQQSVVRTFVIDRPGFEAITVGSAGAAAKTVTR 190

Query: 149 GMVRTIQDSQRAV----ELSETFLSQSGRNQYANSSSKKVMNLLNIAGED---QVTLKVT 201
                I D+ R V     +S    S S     + ++  ++  LL +       +VTL   
Sbjct: 191 DPWADILDAIRVVAPRARVSAMRSSNSITVADSPANVARIAELLEVDDRQASKKVTLLWK 250

Query: 202 IAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETV 259
           +    + +  +  +GF +  TG       S  +  G    +   +      L     E +
Sbjct: 251 LVVFTKSVGGETGLGFNYLKTGGRKISFASPTSLVGTIASALKVESISGESLGS---EMI 307

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------- 308
           L+ L ++ +   + +        Q+     G +     +S ST   + +           
Sbjct: 308 LNLLNQSGSTVVVRDG--ITEIAQNGRSDFGTEKEVFYISRSTPGVASSSTTSASVGLEQ 365

Query: 309 -THDYGVVLHFTPTVLSPGRIGLRIQTEVSE------PVIGVNAGDMPSYRVRKADTTVE 361
            +   G+   F  TV    R+ L     VS                 P    R +   V 
Sbjct: 366 ASVKVGLAGAFGATVFDSERMTLGYDFTVSSLDQLKSVTSAGTTLQSPETTKRYSRGQVP 425

Query: 362 LPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
           +  G T +L+    D     + GI P    I     L  +        +  +  TP L
Sbjct: 426 IKHGETWILSAETSDSNSFDRRGILPAQGSI-----LGGSETAGSSRDQWLLLVTPIL 478


>gi|317133812|ref|YP_004089723.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
 gi|315450274|gb|ADU23837.1| Ig domain protein group 2 domain protein [Ruminococcus albus 7]
          Length = 467

 Score = 49.0 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/175 (16%), Positives = 59/175 (33%), Gaps = 19/175 (10%)

Query: 49  KISIGLNKV-----IILQVPVDVQD--VLVSDPTKADVV--VHSPRTMYLFGKNVGQANV 99
           ++ +   +       +L    + +   VLV D   AD      +P  + + GK  G   +
Sbjct: 206 EMELTYGESDTVSVTLLPFDAENKRLTVLVGDTDIADYEFDQTNPNGIIVTGKKAGTTTI 265

Query: 100 ILIGHDGKQMLNLDILIERDIAHLEM-TLRRFIADSN-IRVEMVSDTVVLHGMVRTIQDS 157
              G      ++ DI     +   +  +       +N +        +V  G        
Sbjct: 266 TFTGDSWTDTIDDDISAVLTVTVNKADSTVTVAPTANELTYTGSGQDLVAKGETEDGTIV 325

Query: 158 QRAVELSETFLSQSGRNQYANSSSK--------KVMNLLNIAGEDQVTLKVTIAE 204
               E ++T  +    ++     ++        KV+   N    + V++KVTIAE
Sbjct: 326 YAIGESADTAPNADAFSENIPGGTEAGDYYVWYKVIGDENHNDSEPVSVKVTIAE 380


>gi|167620934|ref|ZP_02389565.1| Type II secretory pathway, component PulD [Burkholderia
           thailandensis Bt4]
          Length = 63

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   L  G  +VL GL++D     + G   L   P   +       +++ TE+ 
Sbjct: 2   NTRQLQTVTRLKDGEVVVLGGLIQDRNTSARSGYAWL---P---SFLDGRSSSKQRTEVL 55

Query: 412 IAA 414
           +  
Sbjct: 56  LVL 58


>gi|262360319|gb|ACY57040.1| putative membrane transport protein [Yersinia pestis D106004]
          Length = 104

 Score = 48.6 bits (114), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 31/77 (40%)

Query: 267 TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPG 326
             +  +A P L     Q+AS   G    Y        A ++   +  + +  TP +L  G
Sbjct: 20  NQVDIIASPRLITSHQQTASIKQGSDIPYTVSRGKKEAAAIEFKEAVLGMEVTPKILRNG 79

Query: 327 RIGLRIQTEVSEPVIGV 343
           +I L ++   + P I +
Sbjct: 80  KIILDLKISQNMPGITI 96


>gi|283788190|ref|YP_003368055.1| Type IV pilus biogenesis protein [Citrobacter rodentium ICC168]
 gi|30142048|gb|AAO17808.1| CfcD [Citrobacter rodentium]
 gi|282951644|emb|CBG91344.1| putative Type IV pilus biogenesis protein [Citrobacter rodentium
           ICC168]
          Length = 489

 Score = 48.2 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 20/303 (6%)

Query: 99  VILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
           +   G + K    LD+      +   +T +      +   + V D      M +    S 
Sbjct: 171 LDFYGENNKTETTLDLSGNEATSSGGLTGKTETKFESSFWDDVED------MAKNYISSG 224

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
                 ++ +           +  + ++        Q  +   I  + ++ +K++     
Sbjct: 225 NYNIFKDSSVLMVNSRPSEYEALSQALDKYKADNSRQFIVTYKIFTLDKNKVKELSAGLK 284

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
           +       +    +       S  G  S           + L AL + T  R++   +  
Sbjct: 285 LNFEDGHNTVKIGSSL---LDSLTGGISAGWKNSNVDINSGLDALYKLTGDRSIQSGSFI 341

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGA--------TSVTTHDYGVVLHFTPTVLSPGRIGL 330
             +  +          Y +  + T             ++   G     TP VLS GRI +
Sbjct: 342 TRNNMAIPLNMTKSQNYVSGKTRTTDDNGEVNVEVETSSVVTGTSFIITPRVLSDGRIEV 401

Query: 331 RIQTEVS--EPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL-LKDDIQQLKEGIPL 387
                    E +       +P+    +A  +  +  G  +++A   +K++   L+  I  
Sbjct: 402 VSGFTKRYLEGIDTYEDVQLPNVSTTEAFNSSIIMPGDLLMVAKYDVKEEKGGLEYQILG 461

Query: 388 LSK 390
           +  
Sbjct: 462 VGD 464


>gi|124262948|ref|YP_001023418.1| pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
 gi|124262194|gb|ABM97183.1| Pilus (IV) biogenesis [Methylibium petroleiphilum PM1]
          Length = 460

 Score = 47.8 bits (112), Expect = 0.004,   Method: Composition-based stats.
 Identities = 57/476 (11%), Positives = 126/476 (26%), Gaps = 65/476 (13%)

Query: 1   MRYLQRTFFTMMSIFLF-----SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLN 55
           MR   R    +++          ++    +                  +     + + + 
Sbjct: 1   MRTKPRRAAFLLAPLTLALLSGCASILPGRSTDFPADKPVAGPNIPSSVAAQDLVELPV- 59

Query: 56  KVIILQVPVDVQDVLVSDPTKADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQML 110
           +   L +     D  + +     + V          + L G +    ++ + G       
Sbjct: 60  QSATLDMQPAEPDDALPNTQVPPISVTGVGYIEALRLLLEGSSY---SLAVAGDVRAFEG 116

Query: 111 NLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM------VRTIQDSQRAVELS 164
                +      L   + +        + +  + V           V  + D   A  L 
Sbjct: 117 VSAGSLRTPAGPLRDVVEQLSRGGGFFLSVRGNKVTASATKRFVIEVPNLMDQPAAANLL 176

Query: 165 E------------TFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL--KVTIAEVRRDIL 210
                          +  +   + + SS + +   L      +  L  +V + +V     
Sbjct: 177 ASLRRLGARDAYLDAIGNTITFEASRSSWQAIDGYLAHMRRSKPMLVYEVEVYQVELTDT 236

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
              G   +    +     +  +   G   +  G  S   V    +   V+  L+    + 
Sbjct: 237 TNNGIGFTSLAKNLAGDPNNWSVARGG--TGIGSASFAFVGKNVTMAAVVDLLQTQGTVS 294

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH------------DYGVVLHF 318
           +L+ P +  +SG S+ F  G    Y    S     S +                G  L  
Sbjct: 295 SLSRPRVAMLSGSSSKFRVGQTTKYVAKISQQNTGSGSASTTTTSSADTDELKTGFELQM 354

Query: 319 TPTVLSPG-----RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
                        ++ +      ++         +P    R+ +T V    G  I+L GL
Sbjct: 355 KGGYQEGSVFTNLKLTISELIRFNDFEAFGTKLRLPDTTEREIETLVRARPGDLILLGGL 414

Query: 374 LKDDIQQL-KEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLS 428
                    + GI  +           N       +EI +A  P ++   A ++  
Sbjct: 415 GSTKQNAGHEAGITGV-----------NKSTTASRSEIVVAMRPRVISFTAAKEAQ 459


>gi|330862440|emb|CBX72598.1| hypothetical protein YEW_HP33930 [Yersinia enterocolitica W22703]
          Length = 347

 Score = 47.0 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 50/147 (34%), Gaps = 24/147 (16%)

Query: 139 EMVSDTVVLHGMVRTIQDSQRA--VELSETFLSQSGRNQYANSSSKKVMNLLNIAGED-- 194
           +     V L G+V  +++      + L+    S+         S+    N + I      
Sbjct: 191 QYRDQQVQLPGLVSVLREMSAGNHLPLAGEKESEDAPVSAPLFSADPRQNAVIIRDRQAN 250

Query: 195 ----------------QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF 238
                           Q+ + VTI +V    + Q+G   S + S  G   SF +      
Sbjct: 251 MPLYSSLITQLDQRPVQIEISVTIIDVDAGDISQLGIDWSASTSIGGAGVSFNSGE---- 306

Query: 239 VSEGGDFSVKGVLDRFSFETVLHALER 265
            +   D     + +  +F   L+AL+R
Sbjct: 307 AAPHSDGFSTVIGNTGNFMVRLNALQR 333


>gi|148553725|ref|YP_001261307.1| TPR repeat-containing protein [Sphingomonas wittichii RW1]
 gi|148498915|gb|ABQ67169.1| Tetratricopeptide TPR_2 repeat protein [Sphingomonas wittichii RW1]
          Length = 465

 Score = 46.7 bits (109), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 79/280 (28%), Gaps = 39/280 (13%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           + ++  +    R      G     + +           +        GD SV      +S
Sbjct: 198 ILIEAFLIRDTRSAGLSDGINLLDSLALQFGGTLVNYSYDSAGHETRGDVSVTLPGISYS 257

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
                  L     +   A P + A  G+++ F  GG  L   ++  +        D G+ 
Sbjct: 258 LNLAARDLS---RVSLEASPLVLARQGKTSKFLEGGSVLIVPLADDSDPVE---RDVGIT 311

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIGV-----NAGDMPSYRVRKADTTVELPSGGTIVL 370
           +  TP  +    + L +  E+S               +      + +    +P    +++
Sbjct: 312 VEVTPEQIGEDYVDLAVVLELSNITGQSLSDAGRGASLLQTDKTRVEAAARVPFRKAVLV 371

Query: 371 A--GLLKDDIQQLKEGI----PLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAM 424
              G L       +  +    P LS           +  +    ++              
Sbjct: 372 GSTGSLTRRKSGNRSLVAAPLPGLS----------TNGSSASRRDVLALI---------- 411

Query: 425 RDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQN 464
             + R DD  +   DA A    R+     P  AS  E  +
Sbjct: 412 -SVRRADDQVTPPLDADA-LAKRLFDTALPAPASYGERPS 449


>gi|312962468|ref|ZP_07776959.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
 gi|311283395|gb|EFQ61985.1| invasion protein - outer membrane [Pseudomonas fluorescens WH6]
          Length = 453

 Score = 46.7 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 56/210 (26%), Gaps = 13/210 (6%)

Query: 143 DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTI 202
             V + GM  TI+       L          +     +     +LL      QV      
Sbjct: 199 QKVRVPGMASTIEAL-----LVSEHKGPLADSSLGVIAYTDTNSLLIKGKPAQV----KF 249

Query: 203 AE--VRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVL 260
            E  V +    +   + S+             D   K  +   +  +   L+       +
Sbjct: 250 IEQLVAQLDTPKRAIEVSLWLVDVSRDDMKKLDLARKKKTSASNAHILEPLEDKQLMEQI 309

Query: 261 HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP 320
            ALER    R +  P +       A F            S           YG  +   P
Sbjct: 310 TALERRRRARVVTLPVILTQENVPAVFEDNHTFYLPA--SDNDPADWKPVPYGAQVSVLP 367

Query: 321 TVLSPGRIGLRIQTEVSEPVIGVNAGDMPS 350
            +    +I + I+ E    V  V     P+
Sbjct: 368 RIAEANQIEMLIKVEDGRQVREVGRRGKPT 397


>gi|228471921|ref|ZP_04056691.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
           33624]
 gi|228276773|gb|EEK15479.1| hypothetical protein CAPGI0001_0005 [Capnocytophaga gingivalis ATCC
           33624]
          Length = 386

 Score = 46.3 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 8/93 (8%), Positives = 28/93 (30%), Gaps = 4/93 (4%)

Query: 52  IGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGK 107
           +   +   +           V + +   A +    +   + L  K  G   V +   D +
Sbjct: 146 VKEGETTTITFSGVWNATDRVQIVNGEIAQLQGNVTDNKITLLAKKAGTTKVEIFTQDNR 205

Query: 108 QMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
              + ++ +    + L++  +  +      +  
Sbjct: 206 SRGSFEVSVYTTASTLKLPHKNPLPHYRTDITN 238



 Score = 45.5 bits (106), Expect = 0.019,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 58/175 (33%), Gaps = 18/175 (10%)

Query: 28  PIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHS 83
           P   +N +   ++       +  S+ + K   + +         V + +   A +     
Sbjct: 39  PTNPSNPSNPPVASSLKFTPENPSVEVEKTTTVGIVGTWNTTDKVKIDNEEVATLQGAVQ 98

Query: 84  PRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSD 143
              + + GK  G   V ++  D K+  + ++ +   +      L  F  +  +  E  + 
Sbjct: 99  DNKLTVLGKKAGTTKVHILSADNKERGSFELTVSPKL------LLSFTPEKAVVKEGETT 152

Query: 144 TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
           T+   G V    D  +        ++        N +  K+  L   AG  +V +
Sbjct: 153 TITFSG-VWNATDRVQI-------VNGEIAQLQGNVTDNKITLLAKKAGTTKVEI 199


>gi|149928551|ref|ZP_01916778.1| Type IV B pilus protein [Limnobacter sp. MED105]
 gi|149822727|gb|EDM81987.1| Type IV B pilus protein [Limnobacter sp. MED105]
          Length = 312

 Score = 46.3 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 69/270 (25%), Gaps = 52/270 (19%)

Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDR 253
            QV +++ I  V      Q G    +   S               V+         + + 
Sbjct: 51  KQVHVQLDIYSVMSKKDDQQGVSWDVFFRSLSQRYGIGVLSPDSLVAPEAGLIALTIPEA 110

Query: 254 -------------------FSFETVLHALERATAIRTLAEPTLTAISGQ---SASFTSGG 291
                               +   ++ AL            +L A++ Q    A  T+ G
Sbjct: 111 LQGFIPGQGTPNSQTNQRFGASSAIVQALNEIGDNVQHRPISLVALNRQWARKARLTTTG 170

Query: 292 QHLYKTVSSST--------GATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPV--- 340
                  +SS            +      G      P +L    I L++   +S+     
Sbjct: 171 YLSETKPASSGALGGGTGVPGLTTDEITTGDQFAAMPFILDNNTIMLKMGISLSDLTSLL 230

Query: 341 --IGVNAGDMPSYRVRKADT-----TVELPSGGTIVLAGLLKDDIQQLKEGI----PLLS 389
                    +   +     +     T+ L  G  + + GL +D     +  +    PLL+
Sbjct: 231 EITTGTGETLQRVQTPNTSSISDQYTIALRPGEVMAITGLSRDVSGFTERKLTEQAPLLA 290

Query: 390 KIPILGALFRNSRFNREETEIFIAATPFLV 419
                     +   +       +     ++
Sbjct: 291 G--------GSRNLSTMRENFIVLVRAVVL 312


>gi|325107283|ref|YP_004268351.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
 gi|324967551|gb|ADY58329.1| peptidase M56 BlaR1 [Planctomyces brasiliensis DSM 5305]
          Length = 789

 Score = 46.3 bits (108), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 55/285 (19%)

Query: 117 ERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQY 176
                  E  +   +  + +  +    +V+++G     +  ++  E    F         
Sbjct: 500 RGRTTGTEPEISEDLPTAQVHWDGERWSVIVNG---PPEIHRQLSETVRAFNRS------ 550

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                          G  QV ++  I   + D+++  G       S    S   A +   
Sbjct: 551 ---------------GYGQVAVETRIYMSQHDVMEAAGLSWDRIQSGRSESSLPAKNSED 595

Query: 237 KFVSEGGDFSVKGVLDRFSFE----TVLHALERATAIRTLAE------------PTLTAI 280
           +        +   VL   S +     ++  L+    +R +              P LT  
Sbjct: 596 RIDEITNSLNESNVLSNVSRQYHSPVMIAVLDNDQLLRFIKSAFIYVKPENMFAPKLTLR 655

Query: 281 SGQSASFTSGGQHLYKTVSSSTGATSV--------TTHDYGVVLHFTPTVLSPGRIGLRI 332
           +GQS     G Q  +    +     ++              + L  T    +   +    
Sbjct: 656 NGQSGRLYDGVQRPFVVGVNQQEGGNLKPDVRIIEEGTSVKMRLDLTEDHTAVDLVAAVE 715

Query: 333 QTEVSEPVIGVN-------AGDMPSYRVRKADTTVELPSGGTIVL 370
            +++S+                +P+      +T+ +L  G T++L
Sbjct: 716 MSKISDVQTFTTQARGQRVTVQVPNVDKIHVETSSQLTDGETLLL 760


>gi|167042441|gb|ABZ07167.1| putative bacterial type II/III secretion system short domain
           protein [uncultured marine microorganism
           HF4000_ANIW133B20]
          Length = 285

 Score = 45.5 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%)

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318
                R   E  LT + G+ A    G    +           +    ++  HD       
Sbjct: 148 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 207

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P  +   ++ + I   +S                 +  TTV  P G  + + G++++  
Sbjct: 208 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 260

Query: 379 QQLK 382
           +  +
Sbjct: 261 EVSR 264


>gi|167619352|ref|ZP_02387983.1| probable phage-related secreted protein [Burkholderia thailandensis
           Bt4]
          Length = 63

 Score = 45.5 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 352 RVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
             R+  T   L  G  +VL GL++D     + G   L   P   +       +++ TE+ 
Sbjct: 2   NTRQLQTVTRLTDGEVVVLGGLIQDRNSTARSGYAWL---P---SFLDGRSSSKQRTEVL 55

Query: 412 IAA 414
           +  
Sbjct: 56  LVL 58


>gi|91775192|ref|YP_544948.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91775336|ref|YP_545092.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91709179|gb|ABE49107.1| NolW-like protein [Methylobacillus flagellatus KT]
 gi|91709323|gb|ABE49251.1| NolW-like protein [Methylobacillus flagellatus KT]
          Length = 264

 Score = 45.5 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 13/124 (10%)

Query: 265 RATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHF 318
                R   E  LT + G+ A    G    +           +    ++  HD       
Sbjct: 127 SQATSRRSGEQFLTVMDGERAFIQVGQSVPFTQQWVLLTSQYANIQQTIEFHDVTTGFAV 186

Query: 319 TPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
            P  +   ++ + I   +S                 +  TTV  P G  + + G++++  
Sbjct: 187 RPRYIGD-QVEVEITPRISRINARG------FIDFEQLSTTVRAPRGEWLDIGGIMQNHD 239

Query: 379 QQLK 382
           +  +
Sbjct: 240 EVSR 243


>gi|331092338|ref|ZP_08341165.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401571|gb|EGG81154.1| hypothetical protein HMPREF9477_01808 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 317

 Score = 45.5 bits (106), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 12/130 (9%)

Query: 285 ASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344
           A F     ++ +   S  G   +     GV       + +   I ++    +S   + + 
Sbjct: 46  AFFGILFINMAQGSMSGQGLLLLAVVIAGVTGGIFSLLHAFASINMKADQTISGTALNMF 105

Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404
           A     +  R      +            ++       + +PLL  IP++G LF  + + 
Sbjct: 106 APAFAIFVARMIQGVQQ------------IQFTDTFQIDKVPLLGDIPVIGPLFFQNSYI 153

Query: 405 REETEIFIAA 414
                I I  
Sbjct: 154 TTYLGILIFL 163


>gi|171913479|ref|ZP_02928949.1| probable penicillin resistance regulatory protein [Verrucomicrobium
           spinosum DSM 4136]
          Length = 768

 Score = 45.1 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 66/231 (28%), Gaps = 70/231 (30%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV ++  I EV +  L       S  G                         V+G+L 
Sbjct: 509 DQQVLIRSFILEVEQGWL-----PWSDYGLQEPSKD---------------GLQVQGILS 548

Query: 253 RFSFETVLHALERATAIRTLAE-PTLTAISGQSASFTSGGQHLYKTVSSS---------- 301
           +   + +L  ++   ++++L   P++   SGQ        + +Y T              
Sbjct: 549 KEQGQKLLTHVQSDKSVQSLTAAPSVATRSGQRTHVDMVREFIYPTEFDPPQLAQPPTTK 608

Query: 302 ---------------TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----- 341
                          T  T+      G+ + F P V       + +  E+++ +      
Sbjct: 609 DGKPIPGLGNLPIFPTTPTAFEMRPVGLRMEFDPVVQPGNVHRIELYWEITDFLGFMNYG 668

Query: 342 -------------------GVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
                                N    P +   K  T+     G  +V+ G+
Sbjct: 669 NPIKAQVKDQNGKEKELLISENKIQQPIFETLKLTTSFSARDGEYVVIGGI 719


>gi|260587136|ref|ZP_05853049.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
 gi|331082915|ref|ZP_08332036.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542507|gb|EEX23076.1| ABC transporter, permease protein [Blautia hansenii DSM 20583]
 gi|330400056|gb|EGG79709.1| hypothetical protein HMPREF0992_00960 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 317

 Score = 44.7 bits (104), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 12/122 (9%)

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           ++ +   S  G   +     GV       + +   I ++    +S   + + A     + 
Sbjct: 54  NMTQANLSGQGLLLIAIVIAGVTGGIFSLLHAFASINMKADQTISGTALNMFAPAFAIFA 113

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFI 412
            R      +            ++       + +P+L  IP++G LF  + +      I I
Sbjct: 114 ARTIQEVQQ------------IQFTDTFQIDKVPVLGDIPVIGPLFFQNCYITTYIGILI 161

Query: 413 AA 414
             
Sbjct: 162 FL 163


>gi|126664703|ref|ZP_01735687.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17]
 gi|126631029|gb|EBA01643.1| hypothetical protein MELB17_02655 [Marinobacter sp. ELB17]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.035,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 74/235 (31%), Gaps = 11/235 (4%)

Query: 154 IQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL---KVTIAEVRRDIL 210
                 A   S  +           +  + +   +N+    Q  +   +  + +    I+
Sbjct: 12  ASTHAFAAGQSRAYNLNQRPAADVAAQIRDLYEEVNVTVVGQKIVARGETRLLDEIGQII 71

Query: 211 KQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIR 270
           +Q+    +    S    +       G  V+   + +        S    + A  + T   
Sbjct: 72  QQLDVATAQLRISVQSREYLGGKRSGGGVNLTQNNASGSRNIINSNTVTISAQSKTTRSS 131

Query: 271 TLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV--TTHDYGVVLHFTPTVLSPGRI 328
              E +L    GQSA  ++G        +      +V     +       TP ++SP  I
Sbjct: 132 GNRERSLIVQDGQSAQVSAGQIRSLPFAARGGRNPAVLLQLVETRSGFVVTPRMISPQNI 191

Query: 329 GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE 383
                 E+S      +A  +P Y      T  ++  G  + L G+ + + ++  +
Sbjct: 192 ------ELSIMSFEQDAPALPGYDTEALMTIRQVQPGQWVSLGGVERSESRENSD 240


>gi|269964602|ref|ZP_06178841.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
 gi|269830729|gb|EEZ84949.1| General secretion pathway protein D [Vibrio alginolyticus 40B]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.045,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 52/138 (37%), Gaps = 18/138 (13%)

Query: 96  QANVILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTI 154
           + N ILI  D K    L  ++ + D+        R +   N + E + D  VL G+   +
Sbjct: 232 RTNAILISGDPKVRARLKRLIRQLDVEMATKGNNRVVYLKNAKAEDLVD--VLKGVSDNL 289

Query: 155 QDSQRA-----------VELSETFLSQSGRNQYANS---SSKKVMNLLNIAGEDQVTLKV 200
           Q  ++A           V ++    + S           + + V++ L+I    QV ++ 
Sbjct: 290 QAEKQAGQKTSGASRGEVVIAAHAATNSLVLTAPPDIMMALQDVISQLDIR-RAQVLIEA 348

Query: 201 TIAEVRRDILKQIGFQHS 218
            I E+       +G Q  
Sbjct: 349 LIVEMSEGDGINLGVQWG 366


>gi|257486849|ref|ZP_05640890.1| type II and III secretion system protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 57

 Score = 44.0 bits (102), Expect = 0.049,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 359 TVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            V+L SG T++L+G   +++    + I      P    L    +    ++ + +  TP +
Sbjct: 2   KVKLRSGQTLILSGF--EELSDNTDKI-GTGS-PGFFGLGGGRKRTSSKSILVVLITPIV 57


>gi|327540297|gb|EGF26883.1| hypothetical protein RBWH47_03922 [Rhodopirellula baltica WH47]
          Length = 593

 Score = 43.2 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P+       +   +     ++  +     I    N V  L V   ++ V V D + A 
Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124
           V+  + R + L G   G+  V++           +++  L I    ++          L 
Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             + +    +++++    D +++ G     +D++  V L  
Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579


>gi|311105342|ref|YP_003978195.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
 gi|310760031|gb|ADP15480.1| lipoprotein 1 [Achromobacter xylosoxidans A8]
          Length = 528

 Score = 43.2 bits (100), Expect = 0.088,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 86/295 (29%), Gaps = 39/295 (13%)

Query: 152 RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
           R+   +      +   ++ +       +   +  N         V  ++T+     +   
Sbjct: 241 RSGVVADAVEGATSIVVTDTPEALERVARYLERENKALTRRVRLVFEEITVV---ANDAT 297

Query: 212 QIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT 271
             G   ++  +++G +   A    G           +G         ++ AL    A+  
Sbjct: 298 SGGIDWNVVYAAAGAAARLALPGAGAGGGSLDASMARGPFQGTQ--AIVSALSTMGAVVR 355

Query: 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT----------------THDYGVV 315
             +  +  ++ +  +        Y     ST     T                    G  
Sbjct: 356 HNKVPILTLNRRPVTHAVRTTFSYIDRVQSTAVPGTTAGGANGSLPAVSISQKEETVGSF 415

Query: 316 LHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAG--------DMPSYRVRKADTTVELPSG 365
           L   P +   G+I   L     V++P+  +  G           +         VEL  G
Sbjct: 416 LTLLPDIQEDGQILLSLAYDNAVAQPLKTITFGERGNQVQVQQVTIDGNGTVQQVELRPG 475

Query: 366 GTIVLAGLLKDDIQQLKEGI-PLLSKIPIL-GALFRNSRFNREETEIFIAATPFL 418
             I+++G  +   Q  ++ + P L   P++ G L      + E     +  T  +
Sbjct: 476 QPIIVSGFDRSQDQHDRQRLAPGL---PLIAGGL---DSASTERMTTLVLVTAQV 524


>gi|32475170|ref|NP_868164.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
 gi|32445711|emb|CAD78442.1| hypothetical protein RB8056 [Rhodopirellula baltica SH 1]
          Length = 593

 Score = 43.2 bits (100), Expect = 0.089,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 57/161 (35%), Gaps = 14/161 (8%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
             P+       +   +     ++  +     I    N V  L V   ++ V V D + A 
Sbjct: 419 IVPAALASHRGEFHRSVPATEAERSLRIEDTIQCDANDVTSLTVDGVIEAVRVEDDSIAR 478

Query: 79  VVVHSPRTMYLFGKNVGQANVILIGH------DGKQMLNLDILIERDIAH--------LE 124
           V+  + R + L G   G+  V++           +++  L I    ++          L 
Sbjct: 479 VIGSTSRHLRLIGVRPGKTRVLVQQKLAGDAESIREIYELHITSPSNVRGGESQQEQSLM 538

Query: 125 MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSE 165
             + +    +++++    D +++ G     +D++  V L  
Sbjct: 539 ELIEQKYRTASVQISRQGDRIIVQGECDDSRDAKEIVRLIR 579


>gi|87308242|ref|ZP_01090383.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
           3645]
 gi|87288799|gb|EAQ80692.1| hypothetical protein DSM3645_11766 [Blastopirellula marina DSM
           3645]
          Length = 553

 Score = 43.2 bits (100), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 40/132 (30%), Gaps = 20/132 (15%)

Query: 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSS------------STGATS 306
           +L  LE       +    LT ++G       G +    T S             +     
Sbjct: 384 MLEMLEDKKQYELIDSFDLTTVTGHETKVQQGRRQPVVTGSQMIPQRGPDGRATAMQRNQ 443

Query: 307 VTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI-------GVNAGDMPSYRVRKADTT 359
               + G +L  +P +L   R  L++  E S+                 PS      +T 
Sbjct: 444 YNLQNVGTMLTVSPEML-GNRASLKLAFERSDVADPKEDKAEDDANDSPPSITTLIINTQ 502

Query: 360 VELPSGGTIVLA 371
           + L  G   +L+
Sbjct: 503 LLLEDGQATILS 514


>gi|238755357|ref|ZP_04616699.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
 gi|238706392|gb|EEP98767.1| hypothetical protein yruck0001_7720 [Yersinia ruckeri ATCC 29473]
          Length = 182

 Score = 42.8 bits (99), Expect = 0.11,   Method: Composition-based stats.
 Identities = 30/233 (12%), Positives = 63/233 (27%), Gaps = 59/233 (25%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252
           + QV +   I  V                ++     S                 V  V +
Sbjct: 2   DRQVAIHTQILRVE------------APSNNKKIDWSAVVKSPFTDTPADEFSGVAIVDE 49

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
           +   +  + AL     +  + + T    +   A F    +                    
Sbjct: 50  KPGAKGFISALSTQATVSVITQSTTLTTNQAVAPFQYQQESGSNNE-------------- 95

Query: 313 GVVLHFTPTVLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT---TVELPSGG 366
           GV +   P ++      ++ L +    ++     + G+          T    V + SG 
Sbjct: 96  GVNMTVLPLLMPSSSKMQLQLSLSGYDTQIQPFSSGGNTVELTKTHLKTFTQRVNIQSGQ 155

Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           T+VL+G+                          +++  R +T   I  TP ++
Sbjct: 156 TLVLSGM-------------------------SSNQGERHKT--LILITPVIL 181


>gi|163856306|ref|YP_001630604.1| putative outer membrane lipoprotein [Bordetella petrii DSM 12804]
 gi|163260034|emb|CAP42335.1| putative outer membrane lipoprotein [Bordetella petrii]
          Length = 531

 Score = 42.8 bits (99), Expect = 0.12,   Method: Composition-based stats.
 Identities = 29/242 (11%), Positives = 63/242 (26%), Gaps = 31/242 (12%)

Query: 203 AEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA 262
             V  +   + G        S+  + +          +     +V           ++ A
Sbjct: 291 ITVVANDSAEGGIDWKAVYDSARAAVAATLPVAAGGAAAALGATVDS-GPFQGTRAIVSA 349

Query: 263 LERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVT-------------- 308
           L +  A+   +   +  ++ +  +        Y     ST    +               
Sbjct: 350 LSQTGAVLRHSSVPVLTLNRRPVTHAVRTTFSYIDQVQSTAVPGIDAALGSTALPSVSIS 409

Query: 309 --THDYGVVLHFTPTVLSPGRIGL------RIQTEVSEPVIGVNAGDMP----SYRVRKA 356
                 G  L   P   + GRI L       +   +     G     +     +      
Sbjct: 410 QKQETVGTFLTLVPDAQADGRILLSIAYDNTVAQPIKSVTFGTQGNQIQVQQITIDGNGT 469

Query: 357 DTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416
              V L  G  ++L+G  +   +  +    L +  P+L       R + E     +  T 
Sbjct: 470 VQQVALSPGQPVILSGFDRRQDEYDRRR--LSADAPLLAG--GQDRASSERLTTVVLVTA 525

Query: 417 FL 418
            +
Sbjct: 526 QV 527


>gi|326336569|ref|ZP_08202738.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
           338 str. F0234]
 gi|325691234|gb|EGD33204.1| hypothetical protein HMPREF9071_2204 [Capnocytophaga sp. oral taxon
           338 str. F0234]
          Length = 607

 Score = 42.4 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 55/153 (35%), Gaps = 18/153 (11%)

Query: 48  KKISIGLNKVIILQVPV---DVQDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIG 103
           + +SI   K  I+ +         V ++D   A +    +   + L  K VG   V +  
Sbjct: 280 ESVSIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVTDNKITLLAKKVGATKVEVFT 339

Query: 104 HDGKQMLNLDILIERDIAHLEMTLRRFIADSNI-------------RVEMVSDTVV-LHG 149
            +G+   + ++ +   +      ++  +                  R+++ ++ +V L G
Sbjct: 340 KEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEETTTVTIIGVWNTTDRIQIANNEIVELKG 399

Query: 150 MVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
            V   + +  A ++  T +     +  +  S +
Sbjct: 400 GVTNNKITLLAKKVGNTKVEIFTADNRSRGSFE 432



 Score = 41.7 bits (96), Expect = 0.31,   Method: Composition-based stats.
 Identities = 8/67 (11%), Positives = 25/67 (37%), Gaps = 1/67 (1%)

Query: 67  QDVLVSDPTKADVVV-HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
             + +++    ++    +   + L  K VG   V +   D +   + ++ +      L++
Sbjct: 385 DRIQIANNEIVELKGGVTNNKITLLAKKVGNTKVEIFTADNRSRGSFEVSVYTLANTLKL 444

Query: 126 TLRRFIA 132
             +  I 
Sbjct: 445 AYKADIP 451



 Score = 41.3 bits (95), Expect = 0.36,   Method: Composition-based stats.
 Identities = 39/324 (12%), Positives = 89/324 (27%), Gaps = 32/324 (9%)

Query: 51  SIGLNKVIILQVPVDV---QDVLVSDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDG 106
            + + K   + +         V ++D          +   + L  K VG   V ++  DG
Sbjct: 117 EVEIGKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSVLTADG 176

Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGM--------VRTIQDSQ 158
           +   + +I +          L        I  E  +  + + G         V   +  +
Sbjct: 177 RNRGSFEITVTPIAE-----LHFTPERPEIE-EGKTAEITIVGTWNTSDKVKVENTEIVE 230

Query: 159 RAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHS 218
           +  E++   ++   +            N  +  G  QV        V   +L     +  
Sbjct: 231 QQGEVTNNKITLLAKKVGDTKVEIFTANG-HKRGSFQVI-------VTPKLLLSFSPESV 282

Query: 219 ITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLT 278
                     +    +      +  D  V  +    + +  +  L +      +    + 
Sbjct: 283 SIEEGKTTIVTITGVWNTTDRVQITDGEVAALQGEVT-DNKITLLAKKVGATKV---EVF 338

Query: 279 AISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338
              GQS             ++ +     V   +    +       +  RI +    E+ E
Sbjct: 339 TKEGQSRGSFEVTVTPKLLLTFNPVKAVVKKEET-TTVTIIGVWNTTDRIQIANN-EIVE 396

Query: 339 PVIGVNAGDMPSYRVRKADTTVEL 362
              GV    +     +  +T VE+
Sbjct: 397 LKGGVTNNKITLLAKKVGNTKVEI 420



 Score = 40.1 bits (92), Expect = 0.81,   Method: Composition-based stats.
 Identities = 38/364 (10%), Positives = 107/364 (29%), Gaps = 31/364 (8%)

Query: 15  FLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDV---QDVLV 71
              + +  +      ++   A          + +   + + K   + +         V +
Sbjct: 1   MALAMSLLIISCKKSEKEVEAPPTQLKFTPERTE---VEVGKTATVTIVGTWNKTDKVQI 57

Query: 72  SDPTKADVV-VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRF 130
           ++          +   + L  K VG   V ++  DG+   N ++ +          L   
Sbjct: 58  ANKEIITQQGEVTDNKINLLAKKVGTTKVNVLTADGRNRGNFEVTVTP-----TSELHFT 112

Query: 131 IADSNIRVEMVSDTVVLHG---MVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNL 187
                + +   + TV + G       +Q + + +   +  ++ +  N  A       +++
Sbjct: 113 PKKPEVEI-GKATTVTIVGTWNTTDKVQIADKEIVTQQGEVTDNKINLLAKKVGTTKVSV 171

Query: 188 LNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSV 247
           L   G ++ + ++T+       + ++ F         G +             +    + 
Sbjct: 172 LTADGRNRGSFEITV-----TPIAELHFTPERPEIEEGKTAEITIVGTWNTSDKVKVENT 226

Query: 248 KGVLDRFSF-ETVLHALERA-TAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           + V  +       +  L +     +      +   +G               +S S  + 
Sbjct: 227 EIVEQQGEVTNNKITLLAKKVGDTKV----EIFTANGHKRGSFQVIVTPKLLLSFSPESV 282

Query: 306 SVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL--P 363
           S+      + +  T    +  R+ +    EV+     V    +     +   T VE+   
Sbjct: 283 SIEEGKTTI-VTITGVWNTTDRVQITDG-EVAALQGEVTDNKITLLAKKVGATKVEVFTK 340

Query: 364 SGGT 367
            G +
Sbjct: 341 EGQS 344


>gi|154505040|ref|ZP_02041778.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
 gi|153794519|gb|EDN76939.1| hypothetical protein RUMGNA_02550 [Ruminococcus gnavus ATCC 29149]
          Length = 317

 Score = 42.4 bits (98), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 36/106 (33%), Gaps = 12/106 (11%)

Query: 293 HLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYR 352
           ++++   S  G   +     G+       + +   I ++    +S   + + A     + 
Sbjct: 54  NIFQGTLSGQGLFLLAMLVAGLTGGLFSLLHAFASINMKADQTISGTALNLFAPAFAIFT 113

Query: 353 VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALF 398
            R      ++    T  +              +P+L  IP++G LF
Sbjct: 114 ARMIQGMQQIQFTDTFHI------------NKVPVLGDIPVIGDLF 147


>gi|3341598|emb|CAA13143.1| z43r [Vibrio cholerae]
          Length = 166

 Score = 42.4 bits (98), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 16/44 (36%)

Query: 191 AGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF 234
               QV L+  I EV      Q G   S   SS+G +    +  
Sbjct: 123 RMHRQVILEAKILEVTLSDGYQQGINWSKAFSSNGANYKIGSGS 166


>gi|213422219|ref|ZP_03355285.1| virulence-associated secretory protein [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 124

 Score = 42.4 bits (98), Expect = 0.17,   Method: Composition-based stats.
 Identities = 28/161 (17%), Positives = 54/161 (33%), Gaps = 45/161 (27%)

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVL-----HGMVRTIQDSQRAVELSETFLSQSGRNQY 176
            L+  L++  A  NI++    DT  L      G V  I+   +A+++++           
Sbjct: 4   SLQEALKQNAAAGNIKIVAYPDTNSLLVKGTAGQVHFIEMLVKALDVAKRH--------- 54

Query: 177 ANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG 236
                              V L + I ++ +  L+++G   S             +   G
Sbjct: 55  -------------------VELSLWIVDLNKSDLERLGTSWS------------GSITIG 83

Query: 237 KFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL 277
             +    + S    LD   F   ++ALE       ++ P L
Sbjct: 84  DKLGVSLNQSSISTLDGSRFIAAVNALEEKKQATVVSRPVL 124


>gi|220934554|ref|YP_002513453.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995864|gb|ACL72466.1| hypothetical protein Tgr7_1381 [Thioalkalivibrio sp. HL-EbGR7]
          Length = 293

 Score = 42.0 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 8/124 (6%)

Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTV----SSSTGATSVT 308
               +     + R T  R   E  +    GQ A    G      ++       T    V 
Sbjct: 140 AGEIDAQGRVVRRYTTTRRNGEQWVRVQEGQQAHIREGEVIPMASIAYLRRDGTLVGGVD 199

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
                     TP ++  GR+ L     + +     +         R  +T V + +G  +
Sbjct: 200 YQGLDRGFVVTPHLMPDGRVRLH----IVQIAERESPAGGGRIETRGLETVVTIETGEWV 255

Query: 369 VLAG 372
            L G
Sbjct: 256 DLGG 259


>gi|325271166|ref|ZP_08137720.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
 gi|324103699|gb|EGC00992.1| type II and III secretion system protein [Pseudomonas sp. TJI-51]
          Length = 53

 Score = 42.0 bits (97), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 361 ELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
           ++     I+L GL ++       G+  L   P    LFR++      +EI +  
Sbjct: 1   QMRDREVILLGGLTEEKTSDNSTGLSFL---P---KLFRSNTSEASNSEILLVI 48


>gi|87312053|ref|ZP_01094160.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
 gi|87285222|gb|EAQ77149.1| hypothetical protein DSM3645_15135 [Blastopirellula marina DSM 3645]
          Length = 1719

 Score = 42.0 bits (97), Expect = 0.21,   Method: Composition-based stats.
 Identities = 26/163 (15%), Positives = 54/163 (33%), Gaps = 13/163 (7%)

Query: 248  KGVLDRFSFETVLHAL---ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-- 302
              + +  +F      +   +    ++ L  P+L     +     S  Q      +     
Sbjct: 1385 GALANDPTFLAAAQLMGGAQPNGVVQNLY-PSLPTNKDEERLGFSTPQPNQSGSALQDLV 1443

Query: 303  GATSVTTHDYGVVLHFTPTVLSPGRIGL-----RIQTEVSEPVIGVNAGDMPSYRVRKAD 357
               S+   + G      P +   G   +        T + EPV       +   +    +
Sbjct: 1444 PDPSIYKFETGTGFEIRPVIQPDGYSIIYDFNYMYTTNIREPVQADEK-HLGRIKRHFIN 1502

Query: 358  TTVELPSGGTIVLAGL-LKDDIQQLKEGIPLLSKIPILGALFR 399
            T V+  S    +++   +     +  +G+PLL  IP++G  FR
Sbjct: 1503 TQVQTSSFELRLISRYQVALKAARTSQGVPLLQDIPVVGLAFR 1545


>gi|325972807|ref|YP_004248998.1| ABC transporter inner membrane protein [Spirochaeta sp. Buddy]
 gi|324028045|gb|ADY14804.1| ABC-type transporter, integral membrane subunit [Spirochaeta sp.
           Buddy]
          Length = 310

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 50/136 (36%), Gaps = 17/136 (12%)

Query: 273 AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTP-----TVLSPGR 327
           +E +     G       G      T+  +     V     G+++          + +   
Sbjct: 29  SERSGVTNLGLEGLMLVGYFASAITIKMTEATLGVQALPVGILVGVAAGAIFSLLHAFAS 88

Query: 328 IGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           I L+    +S   I + A  +  Y  R         SG   +L G+++ +       IP+
Sbjct: 89  INLKADQVISGTAINMLAAALTVYLARTIS-----GSGNVRILMGIVRKN-------IPV 136

Query: 388 LSKIPILGALFRNSRF 403
           LS+IPI+G LF +  +
Sbjct: 137 LSQIPIIGPLFFSQSY 152


>gi|228476681|ref|ZP_04061352.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126]
 gi|228251680|gb|EEK10775.1| fimbrial assembly protein PilQ [Streptococcus salivarius SK126]
          Length = 173

 Score = 41.7 bits (96), Expect = 0.26,   Method: Composition-based stats.
 Identities = 7/44 (15%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPS 227
           ++  ++I    QV ++  I     +  K++G +  I  +    +
Sbjct: 131 LIRQIDIP-VQQVMIEARIVSATDNFSKELGVKWGILSNGVANN 173


>gi|6176558|gb|AAF05619.1|AF190907_1 XpsD [Xanthomonas oryzae pv. oryzae]
          Length = 124

 Score = 41.3 bits (95), Expect = 0.37,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 18/109 (16%)

Query: 184 VMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF--------- 234
           V+  L++    QV ++  +AEV      Q G       S +  + S A            
Sbjct: 17  VIEKLDV-MPMQVHIEAQVAEVNLTGKLQYGVNWYFENSVNAAADSAANSTGIGAGAGLA 75

Query: 235 --------GGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
                   G       G+   +      +  +++HAL+  T +R L  P
Sbjct: 76  SAAGRNIWGDIAGKITGEKGAQWTFLGKNAASIIHALDEVTNVRLLQTP 124


>gi|115374949|ref|ZP_01462221.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
 gi|310819208|ref|YP_003951566.1| hypothetical protein STAUR_1935 [Stigmatella aurantiaca DW4/3-1]
 gi|115368076|gb|EAU67039.1| hypothetical protein STIAU_3535 [Stigmatella aurantiaca DW4/3-1]
 gi|309392280|gb|ADO69739.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 249

 Score = 41.3 bits (95), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 10/105 (9%)

Query: 69  VLVSDPTKADVVVHS-PRTMYLFGKNVGQANVILIGHDGKQMLNLDILI------ERDIA 121
           V V DP+ A   V S    + L GK  G   ++L       + +L +             
Sbjct: 53  VEVEDPSIATAEVLSGSNELLLTGKRPGSTLLLLYAEGKFAVWSLSVAEPGARPPAAPAP 112

Query: 122 HLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSET 166
            L  T R+      + V+   + ++L   V+        + L +T
Sbjct: 113 GLLATARKACPG--LEVKEAPERLLLA-TVKDAPCRTALLALFQT 154


>gi|289449367|ref|YP_003474976.1| branched-chain amino acid ABC transporter permease [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289183914|gb|ADC90339.1| branched-chain amino acid ABC transporter, permease protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R+ +T  ++P   T  +            + IP
Sbjct: 88  SINMKADQTISGTALNMFAPAFVIFIAREINTIQQIPFEDTFHI------------DRIP 135

Query: 387 LLSKIPILGALF 398
            L+ IP+LG +F
Sbjct: 136 FLADIPVLGPMF 147


>gi|160878916|ref|YP_001557884.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
 gi|160427582|gb|ABX41145.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/93 (15%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R+     ++    T               + +P
Sbjct: 88  SIHMKADQTISGTALNMFAPAFAIFTARQIQGVQQINFDNTF------------RIQKVP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +L  IPILG L   + +        +     +V
Sbjct: 136 VLGDIPILGELLFQNSYITTYLGFLVLIIASIV 168


>gi|297517523|ref|ZP_06935909.1| general secretion pathway protein D precursor [Escherichia coli
           OP50]
          Length = 451

 Score = 40.9 bits (94), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/94 (15%), Positives = 28/94 (29%), Gaps = 1/94 (1%)

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
            G V + ++         +        Q    S + V+  L+I    QV ++  I EV  
Sbjct: 316 EGTVGSGREVVSIAASKHSNALIVTAPQDIMQSLQSVIEQLDIR-RAQVHVEALIVEVAE 374

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
                 G Q +   +      +      G   + 
Sbjct: 375 GSNINFGVQWASKDAGLMQFANGTQIPIGTLGAA 408


>gi|124009380|ref|ZP_01694058.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134]
 gi|123985042|gb|EAY24993.1| hypothetical protein M23134_03707 [Microscilla marina ATCC 23134]
          Length = 1246

 Score = 40.9 bits (94), Expect = 0.50,   Method: Composition-based stats.
 Identities = 34/312 (10%), Positives = 79/312 (25%), Gaps = 34/312 (10%)

Query: 68  DVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTL 127
            + ++ PT A V V S  T+ +               +  Q     +        +    
Sbjct: 334 TIDIAPPTIASVQVLSATTVEVT-----------FNENVDQTTAETLTNYSIDNGIGNPA 382

Query: 128 RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN-----QYANSSSK 182
              +  +N  +  ++    L  +       +   +L+   ++ + +       Y  S   
Sbjct: 383 TATLDGTNKALAHLTLGSPLIDLTNYTLTIENVKDLANNAITSASQGFQYLAPYTPSQRD 442

Query: 183 KVMNLLNIAGEDQVTL-KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
            V+N +      QV L +V   E+     + I          +           G+FV  
Sbjct: 443 IVINEIFADPSPQVGLPEVEFVELFNATNRPIDISGWKLDGVNTSGFPTFVLKSGEFVVL 502

Query: 242 GGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISG---QSASFTSGGQHLYKTV 298
               +              + L    +        +  ++    Q     +     Y   
Sbjct: 503 TSPGNEGLFSG--------NVLSWGGSGTLTNGGEVLTLTNASDQVVDRVNYSDEWYNDN 554

Query: 299 SSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADT 358
           + S G  S+   +       T    +            +           P+  +     
Sbjct: 555 NKSNGGYSLEQMNPTTRCTGTNNWTASSSASGGTPGAQNSVFDTTPDQKAPTINLTS--- 611

Query: 359 TVELPSGGTIVL 370
              L +  T+ +
Sbjct: 612 ---LKNDSTLAI 620


>gi|110801614|ref|YP_698866.1| sugar ABC transporter [Clostridium perfringens SM101]
 gi|110682115|gb|ABG85485.1| ABC transporter, permease protein [Clostridium perfringens SM101]
          Length = 317

 Score = 40.9 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 33/167 (19%), Positives = 58/167 (34%), Gaps = 22/167 (13%)

Query: 253 RFSFETVLHAL-----ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSV 307
            F+   ++ AL     ER+  +    +  +   S   A   S  Q +    S        
Sbjct: 14  AFTIPLLITALGALFSERSGVVNIGLDGLMIVGSFSGAFTVSKLQEVMPGSSLPLWIGLG 73

Query: 308 TTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGT 367
                G++      + +   I L     +S   I + AG +  +  R         SG  
Sbjct: 74  VAVLVGILFSL---LHAFASINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNI 125

Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAA 414
            ++ G +  D       +PLLS IP++G LF +  +    T + I  
Sbjct: 126 RIMQGFIPKD-------VPLLSSIPVIGDLFFSKTYAT--TWLVILI 163


>gi|254224924|ref|ZP_04918539.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
 gi|125622612|gb|EAZ50931.1| Type II secretory pathway, component PulD [Vibrio cholerae V51]
          Length = 405

 Score = 40.9 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 31/253 (12%), Positives = 70/253 (27%), Gaps = 47/253 (18%)

Query: 69  VLVSDPTKA--DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMT 126
           + V D + A  D  V+ P    L    +   N+    +   + L       +     +  
Sbjct: 177 ISVMDRSIATYDGQVNFPGAQSLIAAAI--TNIGQFTNLNDEELTSRAYRVKLSQGEKQA 234

Query: 127 LRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN 186
           L      + ++    S+ +++ G     ++ + A  ++                      
Sbjct: 235 LEEDEKSTKVQALPGSNALLVRGT---QEEVKLAKRIAA--------------------- 270

Query: 187 LLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFS 246
           L+++    Q+   + + ++  +  + +G        S G        F            
Sbjct: 271 LIDVK-RRQLLFSLKVYDISAERKENLGIDSGWLNGSRGIYDIVVPPFT----------- 318

Query: 247 VKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATS 306
                +   F     AL      R++ E  L A+  Q   F          +  S     
Sbjct: 319 -----ETTDFLKNFQALYTNGIARSVYETNLLALENQQGQFGKKQTATLTLI--SDKEVK 371

Query: 307 VTTHDYGVVLHFT 319
               +    L+ T
Sbjct: 372 TEKIEADNSLYVT 384


>gi|54308981|ref|YP_130001.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9]
 gi|46913411|emb|CAG20199.1| hypothetical protein PBPRA1792 [Photobacterium profundum SS9]
          Length = 124

 Score = 40.9 bits (94), Expect = 0.51,   Method: Composition-based stats.
 Identities = 8/35 (22%), Positives = 17/35 (48%)

Query: 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419
           +PLL  IP +G L R +      +++ +     ++
Sbjct: 1   MPLLKDIPWIGGLLRTTSDKSVSSQMSVLIKVTVI 35


>gi|313201537|ref|YP_004040195.1| nolw domain-containing protein [Methylovorus sp. MP688]
 gi|312440853|gb|ADQ84959.1| NolW domain protein [Methylovorus sp. MP688]
          Length = 269

 Score = 40.9 bits (94), Expect = 0.52,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 19/231 (8%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219
             ++  +         + ++  + N L I    +    ++  + ++     + +    S 
Sbjct: 27  RFAQELVPIVAPMVGEDGNASAIDNHLVIRASPERMQAIEELVVKL-DTARRNMRITVSH 85

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277
               SG  ++  A  G   + +G     + +      E  L+  L++    R+      +
Sbjct: 86  EDMQSGNQQNIGAS-GNVRIGQGQVIVQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 144

Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
               G+ A    G +  Y           +    +    D        P  L        
Sbjct: 145 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 198

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            Q EV        AG        +  T V +  G  + + G ++      +
Sbjct: 199 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 248


>gi|160892053|ref|ZP_02073056.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
 gi|156858531|gb|EDO51962.1| hypothetical protein BACUNI_04513 [Bacteroides uniformis ATCC 8492]
          Length = 681

 Score = 40.5 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            D T ADV  +    + LF K  GQ N++     G+ +  ++ +    +  ++       
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
           A            + L G V  +   +    L     +   R    ++++      +   
Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502

Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214
                 +  TIA  E+ ++     G
Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527


>gi|150004697|ref|YP_001299441.1| hypothetical protein BVU_2158 [Bacteroides vulgatus ATCC 8482]
 gi|149933121|gb|ABR39819.1| putative outer membrane protein, probably involved in nutrient
           binding [Bacteroides vulgatus ATCC 8482]
          Length = 681

 Score = 40.5 bits (93), Expect = 0.64,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%), Gaps = 3/145 (2%)

Query: 72  SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI 131
            D T ADV  +    + LF K  GQ N++     G+ +  ++ +    +  ++       
Sbjct: 384 GDQTIADVRTNRDSRLSLFLKEPGQTNIVWDDQPGQSLNLIEPVPNIIVGDMQRAYTTGY 443

Query: 132 ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIA 191
           A            + L G V  +   +    L     +   R    ++++      +   
Sbjct: 444 ALRKGGALNSKYCIQLKGYVA-LVCYRAVEALLNYMEASYERTGTLDATALGYWQAIRSR 502

Query: 192 GEDQVTLKVTIA--EVRRDILKQIG 214
                 +  TIA  E+ ++     G
Sbjct: 503 AGISTDIDATIAATEMDKEAENDWG 527


>gi|322835199|ref|YP_004215225.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
 gi|321170400|gb|ADW76098.1| Ig domain protein group 2 domain protein [Rahnella sp. Y9602]
          Length = 245

 Score = 40.5 bits (93), Expect = 0.65,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 27  PPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPV-------DVQDVLVSDPTKADV 79
           P + E+N A               S+ + +  ++ V V          +V  +DPT A +
Sbjct: 147 PALAESNQAAAVPVTGVTVTQSTTSVVVGQNAVITVAVLPDGATNGAFNVAAADPTVATL 206

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQML 110
            V S  T+   G   G   +I++ +DG+++ 
Sbjct: 207 TV-SGNTVTAKGLKAGTTQLIVMTNDGQKVA 236


>gi|293372378|ref|ZP_06618762.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
 gi|292632561|gb|EFF51155.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
          Length = 394

 Score = 40.5 bits (93), Expect = 0.67,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59
           ++R    +  I L +                  +          + ++I L++       
Sbjct: 1   MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           +        V  S+   A   V S   + + G   G A + +I           ++ +  
Sbjct: 53  ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111

Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158
              ++ +      +    + +   +    +     ++  ++
Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152


>gi|261257911|ref|ZP_05950444.1| type II secretion protein [Escherichia coli O157:H7 str. FRIK966]
          Length = 374

 Score = 40.5 bits (93), Expect = 0.68,   Method: Composition-based stats.
 Identities = 10/57 (17%), Positives = 20/57 (35%), Gaps = 1/57 (1%)

Query: 172 GRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
                     + V++ L+I    QV ++  IAE++      +G Q     +      
Sbjct: 319 TGAPDVIRDLENVISQLDIRRP-QVLVEAIIAEIQDADGLNLGIQWVNKHAGVAQFT 374


>gi|204927748|ref|ZP_03218949.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323090|gb|EDZ08286.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|320085966|emb|CBY95740.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 71

 Score = 40.1 bits (92), Expect = 0.70,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
                  + P+   R   T V L  G  I+L GL +   
Sbjct: 2   TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40


>gi|237721885|ref|ZP_04552366.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229448754|gb|EEO54545.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 394

 Score = 40.1 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/161 (8%), Positives = 45/161 (27%), Gaps = 15/161 (9%)

Query: 4   LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNK----VII 59
           ++R    +  I L +                  +          + ++I L++       
Sbjct: 1   MKRNIIHLTGIALCAIGLFSG--------CNEDLPSYTSLTVDAETLTINLDETTEGSFN 52

Query: 60  LQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERD 119
           +        V  S+   A   V S   + + G   G A + +I           ++ +  
Sbjct: 53  ITGGNSGYKVSSSNAAVATA-VISGNEVIVTGLKYGTATLTVIDWTKNSANVKVVVAQEQ 111

Query: 120 IAHLEMTLRRFIADS--NIRVEMVSDTVVLHGMVRTIQDSQ 158
              ++ +      +    + +   +    +     ++  ++
Sbjct: 112 ELAVKTSSTTMFFEEHKTLEIYTGNGGYSITSSNESVATAK 152


>gi|6979180|gb|AAF34347.1| OmpA [Rickettsia sp. DnS28]
          Length = 1060

 Score = 40.1 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++      
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGVDVKIGEIQGTGTNT 426

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVNGVVGTAANSVGDITTAGATSFASSVNAK 486

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600


>gi|253999512|ref|YP_003051575.1| NolW domain-containing protein [Methylovorus sp. SIP3-4]
 gi|253986191|gb|ACT51048.1| NolW domain protein [Methylovorus sp. SIP3-4]
          Length = 286

 Score = 40.1 bits (92), Expect = 0.79,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 67/231 (29%), Gaps = 19/231 (8%)

Query: 162 ELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT--LKVTIAEVRRDILKQIGFQHSI 219
             ++  +         + ++  + N L I    +    ++  +A++     + +    S 
Sbjct: 44  RFAQELVPIVAPIVGEDGNASAIDNHLVIRASPERMQAIEELVAKL-DTARRNMRITVSH 102

Query: 220 TGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHA-LERATAIRTLA-EPTL 277
               SG  ++  A  G   + +G     + +      E  L+  L++    R+      +
Sbjct: 103 EDMQSGNQQNIGAS-GNVRIGQGQVILQRRMPGDLPPENNLNIDLDQREYSRSQQGSEFV 161

Query: 278 TAISGQSASFTSGGQHLYKTVS------SSTGATSVTTHDYGVVLHFTPTVLSPGRIGLR 331
               G+ A    G +  Y           +    +    D        P  L        
Sbjct: 162 NVAEGERAFIRVGQRVPYTQQWLVLTQSYAQRIRNTQFQDITTGFAVRPRALGD------ 215

Query: 332 IQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLK 382
            Q EV        AG        +  T V +  G  + + G ++      +
Sbjct: 216 -QVEVEITPRIAQAGAGGVIDFEELSTIVMVRPGEWLDIGGTMQSRDDVSR 265


>gi|223985201|ref|ZP_03635286.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
            12042]
 gi|223962818|gb|EEF67245.1| hypothetical protein HOLDEFILI_02592 [Holdemania filiformis DSM
            12042]
          Length = 1122

 Score = 40.1 bits (92), Expect = 0.84,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 49/144 (34%), Gaps = 19/144 (13%)

Query: 52   IGLNKVIILQVPVDVQDVLV---SDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD--- 105
            + +N+   L +  +V+D ++   +DP+  D        + + GK  G   +  + +    
Sbjct: 982  LLVNEPTKLHLDRNVEDQIIWNIADPSILD---LDEENLEITGKKPGITKLTAMMNGISS 1038

Query: 106  --GKQMLNLDILIE--RDIAHLEMTLRRFIADSNIRV------EMVSDTVVLHGMVRTIQ 155
                 + ++D+  +    +   +        +  IRV      E V+D V L      + 
Sbjct: 1039 TLSVTVYSIDVNSKLSIRVEDYQSAGLEIGEERQIRVVGSIGQEEVNDRVTLTSSNPKVA 1098

Query: 156  DSQRAVELSETFLSQSGRNQYANS 179
                A +L    L  +        
Sbjct: 1099 VIDEAGKLKAIGLGTTTITAAVKE 1122


>gi|168698533|ref|ZP_02730810.1| hypothetical protein GobsU_03369 [Gemmata obscuriglobus UQM 2246]
          Length = 635

 Score = 39.7 bits (91), Expect = 0.97,   Method: Composition-based stats.
 Identities = 32/197 (16%), Positives = 55/197 (27%), Gaps = 40/197 (20%)

Query: 236 GKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLY 295
           G     G    V    +       L A +       L+ P +     Q+     G  +  
Sbjct: 447 GLTTERGTSGCVLTPREAERLNDFLRAAKEKGECEVLSRPLVQVADNQTGYVQIGQNYPV 506

Query: 296 KTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE---PVIGVNAGDMPSYR 352
                      V +   G  L  TP + S G+  +++ TEV         V    +P   
Sbjct: 507 ALAGG-----KVESKFAGTALRVTPCLASDGQ-TVKLTTEVQNGKVIPGTVMTAFVPGTT 560

Query: 353 ------------VRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRN 400
                       V++    V +P+G T V+A                   +P+       
Sbjct: 561 FPVTTLMPATVCVQEVRANVAVPAGHTAVVA-------------------VPVAEPAAGG 601

Query: 401 SRFNREETEIFIAATPF 417
              +   T+  +  TP 
Sbjct: 602 GARSGSRTQTIVVLTPT 618


>gi|296388395|ref|ZP_06877870.1| general secretion pathway protein D [Pseudomonas aeruginosa PAb1]
          Length = 357

 Score = 39.7 bits (91), Expect = 1.00,   Method: Composition-based stats.
 Identities = 34/236 (14%), Positives = 69/236 (29%), Gaps = 28/236 (11%)

Query: 18  SSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKA 77
              P    L  +  ANA +I+     I + + +   L++       V             
Sbjct: 126 PLVPQYGHLAAVPSANALIISDRSANIARIEDVIRQLDQKGSHDYSVINLRY----GWVM 181

Query: 78  DV-VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLR---RFIAD 133
           D   V +        K    A VI      + ++         +  L  +L       A+
Sbjct: 182 DAAEVLNNAMSRGQAKGAAGAQVIADARTNRLIILGPPQARAKLVQLAQSLDTPTARSAN 241

Query: 134 SNIRVEMVSDTVVL--------HGMVRTIQDSQRAVELSETFLSQSGRNQYANS------ 179
           + +     +D   L         GM                       ++  N+      
Sbjct: 242 TRVIRLRHNDAKTLAETLGQISEGMKNNGGQGGEQTGGGRPSNILIRADESTNALILLAD 301

Query: 180 -----SSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSF 230
                + + ++  L++    QV ++  I E+  DI   +G Q +I     G +++ 
Sbjct: 302 PDTVNALEDIVRQLDVP-RAQVLVEAAIVEISGDIQDAVGVQWAINKGGMGGTRTN 356


>gi|197262271|ref|ZP_03162345.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|200389824|ref|ZP_03216435.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205357882|ref|ZP_03223866.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205359009|ref|ZP_03224191.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|197240526|gb|EDY23146.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|199602269|gb|EDZ00815.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205328947|gb|EDZ15711.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339559|gb|EDZ26323.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|267993459|gb|ACY88344.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|321224172|gb|EFX49235.1| putative phage-related secreted protein [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 71

 Score = 39.7 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 14/39 (35%)

Query: 340 VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
                  + P+   R   T V L  G  I+L GL +   
Sbjct: 2   TTETGVNNSPTLIKRDVTTEVSLADGDIILLGGLAEQSD 40


>gi|198459322|ref|XP_001361339.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
 gi|198136652|gb|EAL25917.2| GA20669 [Drosophila pseudoobscura pseudoobscura]
          Length = 1857

 Score = 39.7 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 71   VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            V +P   +V +       P  +   + GKN+G+  ++     G Q ++ + ++ +  A +
Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075

Query: 124  EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             +  R    +  S+I++           L   V   Q +  +  +       +       
Sbjct: 1076 RLYPRDSTLLVGSSIQIYSQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135

Query: 179  SSSKKVMNLLNIAGEDQVTLKVTIA 203
                 V     +    Q T++V +A
Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158


>gi|110799128|ref|YP_696263.1| ABC transporter, permease protein [Clostridium perfringens ATCC
           13124]
 gi|168206804|ref|ZP_02632809.1| ABC transporter, permease protein [Clostridium perfringens E str.
           JGS1987]
 gi|168209351|ref|ZP_02634976.1| ABC transporter, permease protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|168213546|ref|ZP_02639171.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
           F4969]
 gi|168217678|ref|ZP_02643303.1| ABC transporter, permease protein [Clostridium perfringens NCTC
           8239]
 gi|169342761|ref|ZP_02863797.1| ABC transporter, permease protein [Clostridium perfringens C str.
           JGS1495]
 gi|182626038|ref|ZP_02953800.1| ABC transporter, permease protein [Clostridium perfringens D str.
           JGS1721]
 gi|110673775|gb|ABG82762.1| ABC transporter, permease protein [Clostridium perfringens ATCC
           13124]
 gi|169299018|gb|EDS81090.1| ABC transporter, permease protein [Clostridium perfringens C str.
           JGS1495]
 gi|170661774|gb|EDT14457.1| ABC transporter, permease protein [Clostridium perfringens E str.
           JGS1987]
 gi|170712523|gb|EDT24705.1| ABC transporter, permease protein [Clostridium perfringens B str.
           ATCC 3626]
 gi|170714913|gb|EDT27095.1| ABC transporter, permease protein [Clostridium perfringens CPE str.
           F4969]
 gi|177908650|gb|EDT71166.1| ABC transporter, permease protein [Clostridium perfringens D str.
           JGS1721]
 gi|182380276|gb|EDT77755.1| ABC transporter, permease protein [Clostridium perfringens NCTC
           8239]
          Length = 317

 Score = 39.7 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   ++ G +  D       +P
Sbjct: 90  SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +LS IPI+G LF +  +    T + I  
Sbjct: 138 VLSSIPIIGDLFFSKTYAT--TWLVILI 163


>gi|160881391|ref|YP_001560359.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
 gi|160430057|gb|ABX43620.1| inner-membrane translocator [Clostridium phytofermentans ISDg]
          Length = 321

 Score = 39.7 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +  +++   + +P+L  IPI+G +F    +
Sbjct: 124 ITTNVKYYIQKVPVLGDIPIIGKMFFQKTY 153


>gi|269964302|ref|ZP_06178560.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269830962|gb|EEZ85163.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 204

 Score = 39.7 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/104 (8%), Positives = 35/104 (33%), Gaps = 1/104 (0%)

Query: 137 RVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQV 196
           +   +++ +   G +  + +         T               ++++  L+I  + QV
Sbjct: 96  KASDIAEMINGEGNISMLSERGSMTIDERTNSLLIRELPENIEVIREIIESLDIPVK-QV 154

Query: 197 TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVS 240
            ++  I  +    + ++G +   T  +   +   + +     + 
Sbjct: 155 QIEARIVTINEGNMDELGVRWGFTSINGSHTVGGSIENNLATIG 198


>gi|6979184|gb|AAF34348.1| OmpA [Rickettsia sp. DnS14]
 gi|87245018|gb|ABD34816.1| OmpA [Rickettsia raoultii]
          Length = 1060

 Score = 39.7 bits (91), Expect = 1.1,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 91/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++   +  
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGINT 426

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 427 LTLSANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFASSVNAK 486

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAVKSGGNILIKSGNTLDLSGV 600


>gi|332284675|ref|YP_004416586.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7]
 gi|330428628|gb|AEC19962.1| putative outer membrane lipoprotein [Pusillimonas sp. T7-7]
          Length = 529

 Score = 39.3 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 73/233 (31%), Gaps = 29/233 (12%)

Query: 209 ILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATA 268
              + G   ++  SS+  + +      G          +K    + S + ++ AL     
Sbjct: 299 DNAEAGLDWNLVFSSAKVAAAMTMAGAGMAEPGAISLGLKQGSFQGS-DAIVKALSEVGQ 357

Query: 269 IRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST------------GATSVTTHDYGVVL 316
           +   +   +  ++ +  +        Y     +T             + S      G +L
Sbjct: 358 VVRRSSLPVLTLNRRPVTHAVRTTFSYIDKVQTTALASAVGMALPSVSVSQREETVGSLL 417

Query: 317 HFTPTVLSPGRIGLR--IQTEVSEPVIGVNAGD--------MPSYRVRKADTTVELPSGG 366
              P     G+I L       V++P+  V  GD          +         V L  G 
Sbjct: 418 TLVPDAQEDGQILLSVAYDNTVAQPLKSVTFGDKENPLQLQQITIDGNGTVQQVALQPGQ 477

Query: 367 TIVLAGLLKDDIQQLKEGI-PLLSKIPILGALFRNSRFNREETEIFIAATPFL 418
            ++++G  +   +     + P    +P++  L  + R +R+     +  T  +
Sbjct: 478 PLLISGFDRTQEETEGRRLNPG---MPLV--LGGSDRASRQSLMTVMVVTAQV 525


>gi|166368218|ref|YP_001660491.1| hypothetical protein MAE_54770 [Microcystis aeruginosa NIES-843]
 gi|166090591|dbj|BAG05299.1| unknown protein [Microcystis aeruginosa NIES-843]
          Length = 710

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 69/245 (28%), Gaps = 30/245 (12%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           ++    E     ++ I   +     +     S     G K        S          +
Sbjct: 358 VEELFIEPTLARIQSIVRDYKKVSYAEVGKTSVQGLNGIKSTVTSTTVSAFDETGPLRLD 417

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLH 317
                 + A+ I   ++  + A +G  A+       L    + S   ++      GV + 
Sbjct: 418 ---ELFKTASEINNFSKELIPAPAG--ANTVPSAPVLSLIAALSKDTSAWRAITSGVSME 472

Query: 318 FTPTVLSPG-----RIGLRIQTEVS------EPVIGVNAGDMPSYRVRKADTTVELPSGG 366
            TP+VL         I               +         +   +     T V + +  
Sbjct: 473 ITPSVLRNSASAELDINFTTGPTKDKEPVPDQFTGTTRLRPLSRIKQNTVSTRVYVNTLD 532

Query: 367 TIVLAGLLKDDIQQL-KEGIPLLSKI--------PILGALF--RNSRFNREETEIFI--- 412
              L+       +   +  IP++  I        PI+G LF  +NS  + +   I +   
Sbjct: 533 IFALSTFNSQTTEDGGRTYIPVIGTIWQGVFSGVPIIGQLFSWKNSPQSVQHQSIVLTNS 592

Query: 413 AATPF 417
              P 
Sbjct: 593 FIVPT 597


>gi|257457694|ref|ZP_05622861.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
 gi|257445080|gb|EEV20156.1| ABC transporter, permease protein [Treponema vincentii ATCC 35580]
          Length = 310

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L+    +S   I + A  +  Y  R    +  +       +A +++ D       IP
Sbjct: 89  SITLKADQVISGTAINMLAAALTIYMARTITGSGNVR------VASIIRQD-------IP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
            LSKIP+LG LF +  +      + I  
Sbjct: 136 GLSKIPVLGPLFFSQVYWSTWLVLVILI 163


>gi|160940454|ref|ZP_02087799.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437034|gb|EDP14801.1| hypothetical protein CLOBOL_05344 [Clostridium bolteae ATCC
           BAA-613]
          Length = 313

 Score = 39.3 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 13/90 (14%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     VS   I +    + S+  +       + SG +       +      K  IP
Sbjct: 88  SIRLAQDQSVSGIAINIFMAGVTSFLYK------LMSSGQS------YQQIEPFAKLKIP 135

Query: 387 LLSKIPILGA-LFRNSRFNREETEIFIAAT 415
            L  IP++G  LF           + I  T
Sbjct: 136 FLGDIPLIGNALFNQDVLTYGVYVLVILVT 165


>gi|325485050|gb|ADZ16422.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485052|gb|ADZ16423.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485056|gb|ADZ16425.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485060|gb|ADZ16427.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485062|gb|ADZ16428.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485064|gb|ADZ16429.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485066|gb|ADZ16430.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485068|gb|ADZ16431.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485070|gb|ADZ16432.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485072|gb|ADZ16433.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485074|gb|ADZ16434.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485076|gb|ADZ16435.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485078|gb|ADZ16436.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485080|gb|ADZ16437.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485082|gb|ADZ16438.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485084|gb|ADZ16439.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485086|gb|ADZ16440.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485088|gb|ADZ16441.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485090|gb|ADZ16442.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485092|gb|ADZ16443.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485094|gb|ADZ16444.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485096|gb|ADZ16445.1| outer membrane protein A [Rickettsia raoultii]
 gi|325485098|gb|ADZ16446.1| outer membrane protein A [Rickettsia raoultii]
          Length = 1052

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++      
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591


>gi|315501954|ref|YP_004080841.1| hypothetical protein ML5_1150 [Micromonospora sp. L5]
 gi|315408573|gb|ADU06690.1| protein of unknown function DUF58 [Micromonospora sp. L5]
          Length = 453

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/168 (10%), Positives = 47/168 (27%), Gaps = 14/168 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           L R    +  + L ++     +  +                      ++ +G+    +++
Sbjct: 16  LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74

Query: 62  VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
                  V V++P       A V     R + +     G   + +    G     +  + 
Sbjct: 75  GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134

Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                 L+         R  I  + +RV      +V   ++     ++
Sbjct: 135 RGSAVDLKLTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182


>gi|322514181|ref|ZP_08067246.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
 gi|322119967|gb|EFX91969.1| rough colony protein A [Actinobacillus ureae ATCC 25976]
          Length = 68

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
           +K+T+AEV +    +IG   +    +   +   A   GG   S G       +++  +  
Sbjct: 1   MKLTVAEVNKTFSDKIGINWNNLSGNFFRNLGSATISGGFGKSGGQ----LALVNSNNLN 56

Query: 258 TVLHAL 263
            +L AL
Sbjct: 57  VLLSAL 62


>gi|6979190|gb|AAF34351.1| OmpA [Rickettsia sp. RpA4]
 gi|87245013|gb|ABD34814.1| OmpA [Rickettsia raoultii]
          Length = 1060

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 311 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 367

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++      
Sbjct: 368 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 426

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 427 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 486

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 487 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 546

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 547 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 600


>gi|187478853|ref|YP_786877.1| type IV pilus assembly protein [Bordetella avium 197N]
 gi|115423439|emb|CAJ49973.1| type IV pilus assembly protein [Bordetella avium 197N]
          Length = 520

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 21/187 (11%)

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
           + +  A  G                     + ++  L +  AI       L  ++ +  +
Sbjct: 309 NSARVAAQGMLPTGLSAAIPGADKTGWDGSQALIKMLAQYGAISHQRSIPLLTLNRRPVT 368

Query: 287 FTSGGQHLYKTVSSS---------TGATSVTTHDYGVVLHFTPTVLSPGRIGLR--IQTE 335
           +       Y     S           A +      G  L   P     G I L     + 
Sbjct: 369 YAVHNTFSYVDQVESLRAADDKASGVAINQKRVTVGTFLTLLPDAQDDGSILLSIGYDST 428

Query: 336 VSEPVIGVN-AGDMPSYRVRKAD-------TTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
           V++P+  +    +    +V++ +         V +  G  +VL+G  +      ++    
Sbjct: 429 VAQPLKALAFGSNSQPLQVQQLNLDGNGSVQQVRVRPGQPVVLSGFDRSIDSYDRQR--F 486

Query: 388 LSKIPIL 394
               P+L
Sbjct: 487 TPDAPLL 493


>gi|325485054|gb|ADZ16424.1| outer membrane protein A [Rickettsia raoultii]
          Length = 1037

 Score = 39.3 bits (90), Expect = 1.4,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++      
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591


>gi|89893914|ref|YP_517401.1| hypothetical protein DSY1168 [Desulfitobacterium hafniense Y51]
 gi|219668288|ref|YP_002458723.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
 gi|89333362|dbj|BAE82957.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538548|gb|ACL20287.1| inner-membrane translocator [Desulfitobacterium hafniense DCB-2]
          Length = 321

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 374 LKDDIQQLKEGIPLLSKIPILGALFRNSRF 403
           +  ++      +P L  +P++G LF  + +
Sbjct: 124 ITTNVNFYLRKVPFLGDLPVIGKLFFQNTY 153


>gi|182419285|ref|ZP_02950538.1| ABC transporter, permease protein [Clostridium butyricum 5521]
 gi|237668765|ref|ZP_04528749.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
           str. BoNT E BL5262]
 gi|182376925|gb|EDT74496.1| ABC transporter, permease protein [Clostridium butyricum 5521]
 gi|237657113|gb|EEP54669.1| sugar ABC transporter, permease protein [Clostridium butyricum E4
           str. BoNT E BL5262]
          Length = 317

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 12/88 (13%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + A  +  +  R         SG   + +G    D       +P
Sbjct: 90  SINLNADQTISGTAINMIASALTIFLARTI-----AGSGRIRIQSGFYPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
            LS+IPI+G LF    +      + I  
Sbjct: 138 FLSQIPIIGDLFFKKTYITTWLVLLILV 165


>gi|29348436|ref|NP_811939.1| hypothetical protein BT_3027 [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29340340|gb|AAO78133.1| conserved hypothetical protein [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 395

 Score = 39.0 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 82/281 (29%), Gaps = 26/281 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  ++R    +    L ++             +  V N  ++ I   +        + I+
Sbjct: 1   MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           Q   +   +  S+   A   +     + +     G  ++ +            I+ +   
Sbjct: 58  QGNGN-YKITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115

Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170
             L  +        N  + V   +           V+   V   +   +   L+    + 
Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174

Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           +  ++   S+    KV+  L +   +++            + + +  +          + 
Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           + +A +    ++E G   +   L R+ F   +   ++    
Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGEA 267


>gi|302865409|ref|YP_003834046.1| hypothetical protein Micau_0906 [Micromonospora aurantiaca ATCC
           27029]
 gi|302568268|gb|ADL44470.1| protein of unknown function DUF58 [Micromonospora aurantiaca ATCC
           27029]
          Length = 453

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 47/168 (27%), Gaps = 14/168 (8%)

Query: 4   LQRTFFTMMSIFLFSSNPS--VAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ 61
           L R    +  + L ++     +  +                      ++ +G+    +++
Sbjct: 16  LGRAVL-LTGVLLVAAVLLGRIDLVVLATPFALGTAYALRRRPAALPELELGVGDTHLVE 74

Query: 62  VPVDVQDVLVSDP-----TKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILI 116
                  V V++P       A V     R + +     G   + +    G     +  + 
Sbjct: 75  GAPLAATVAVANPDLVGYDLAVVRTRMSRWLRVEQVGFGGTGLDVSRSGGADRPFVTSVP 134

Query: 117 ERDIAHLE------MTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
                 LE         R  I  + +RV      +V   ++     ++
Sbjct: 135 RGSAVDLELTGTALRWGRHPIGPAGVRVAAADGLLVSRAVITDPIRAR 182


>gi|327541608|gb|EGF28138.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica WH47]
          Length = 4236

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 50/179 (27%), Gaps = 14/179 (7%)

Query: 216  QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEP 275
              S   + +G +    A+    F+  G   S    +D       ++          +   
Sbjct: 3765 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFDHTVDGPVEIEFIN-----GDNLIVQSG 3819

Query: 276  TLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV-----VLHFTPTVLS--PGRI 328
            TL+  +   AS     Q       +      V     G       L           G I
Sbjct: 3820 TLSIENN--ASLDLLNQTGGTLQFNGDLGVDVLNQQGGTLDLEGTLSVLQEFTQALGGVI 3877

Query: 329  GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
                  E+++    ++  ++    V    T  ++  G  I L GL  D      + +P 
Sbjct: 3878 EAIGNIEITQSSGTLDVQNLSGTHVELNATNGDVQVGDIIALGGLSIDANSGNIDQLPG 3936


>gi|326387091|ref|ZP_08208701.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
            19370]
 gi|326208272|gb|EGD59079.1| sensory box histidine kinase [Novosphingobium nitrogenifigens DSM
            19370]
          Length = 1172

 Score = 39.0 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 15/86 (17%)

Query: 372  GLLKDDIQQLKEGIPL-LSKIPILGALFRNSRFNREETEIF------IAATPF---LVKP 421
            GL   +  +L   +P  L +IPILG  F     + ++ E+       +   PF    ++ 
Sbjct: 990  GLSGAETIRLIRRLPGRLGRIPILG--FTAYSNSDKQRELVEAGGGDVIVKPFTRATIRD 1047

Query: 422  VAMRDLSRP---DDHYSVEDDAKAFF 444
               R ++ P    D  +  ++ + F 
Sbjct: 1048 AIARAIATPSCGGDKAAGSEEFERFL 1073


>gi|238027221|ref|YP_002911452.1| putative outer membrane phospholipase A [Burkholderia glumae
          BGR1]
 gi|237876415|gb|ACR28748.1| Putative outer membrane phospholipase A [Burkholderia glumae
          BGR1]
          Length = 429

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 1  MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDV-EIGKGKKISIGL----- 54
          MR+  R  F +    L +  P+ +       A+A V  +    E      +++ L     
Sbjct: 1  MRHRSRRRFALPRRALAALIPAASLAGAAIPAHATVSLVQPAREAAASAPLTLTLIYADD 60

Query: 55 NKVIILQVPVDVQDVLVSDPTKADVVVHSPRT 86
          ++  +     D  +V V+   +A V V   R 
Sbjct: 61 DRAPLAVTTPDSLEVTVTGAEQAPVTVRLARE 92


>gi|195172636|ref|XP_002027102.1| GL20049 [Drosophila persimilis]
 gi|194112915|gb|EDW34958.1| GL20049 [Drosophila persimilis]
          Length = 1879

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 51/145 (35%), Gaps = 14/145 (9%)

Query: 71   VSDPTKADVVV-----HSPRTMY--LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
            V +P   +V +       P  +   + GKN+G+  ++     G Q ++ + ++ +  A +
Sbjct: 1016 VFNPNILNVRLDMQHNLRPGQIRYSITGKNIGETKIVFQSGKGSQQVSSEPIVVQVFAPI 1075

Query: 124  EMTLRR--FIADSNIRVEMVSD---TVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
             +  R    +  S+I++           L   V   Q +  +  +       +       
Sbjct: 1076 RLYPRDSTLLVGSSIQIYCQGGPQPNTNLIYTVEKEQVATMSSAIVTAHRLGASNITGKC 1135

Query: 179  SSSKKVMNLLNIAGEDQVTLKVTIA 203
                 V     +    Q T++V +A
Sbjct: 1136 LMKNPVTGKDEV--VSQDTIEVRVA 1158


>gi|325485058|gb|ADZ16426.1| outer membrane protein A [Rickettsia raoultii]
          Length = 1010

 Score = 39.0 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 90/295 (30%), Gaps = 23/295 (7%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
              +++   G+  L         +       +       +     + TV L+     +  
Sbjct: 302 TTNVVLDTTGQLELGATTANVVLLNDAVQLTQTGNIGGFLDFNAKNGTVTLN---NNVNV 358

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL----KVTIAEVRRDILKQ 212
           +        T          +N +S   + +L +   + VT+     V I E++      
Sbjct: 359 AGAVQNTGGTNSGTLIVLGASNLNSVNGIAMLKVGAGN-VTIAKGGDVKIGEIQGTGTNT 417

Query: 213 I---------GFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHAL 263
           +         G  +   G +   + +      G   +              SF + ++A 
Sbjct: 418 LTLPANFNLTGSINKTGGQALKLNFTNGGSVSGVVGTAANSVGDITTAGATSFVSSVNAK 477

Query: 264 ERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVL 323
             AT   T +       +G          +  K V++++   +  T ++G  L F   + 
Sbjct: 478 GTATLGGTTSFADTFTNTGAVTLAKGSITNFAKNVTATSFVANSATINFGNSLAFNSNIT 537

Query: 324 SPGRIGLRIQTEVSEPVIGVNAGDMPSYRVR-----KADTTVELPSGGTIVLAGL 373
             G   L +     +     +  DM +         K+   + + SG T+ L+G+
Sbjct: 538 GSGT-TLTLGANQVKYTGTGSFTDMLTLNTTFDGAAKSGGNILIKSGNTLDLSGV 591


>gi|331085627|ref|ZP_08334711.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407514|gb|EGG87016.1| hypothetical protein HMPREF0987_01014 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 317

 Score = 39.0 bits (89), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R      ++    T  +            + +P
Sbjct: 88  SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135

Query: 387 LLSKIPILGALF 398
           +L  IP++G +F
Sbjct: 136 VLGDIPVIGDMF 147


>gi|325660645|ref|ZP_08149276.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325473054|gb|EGC76261.1| hypothetical protein HMPREF0490_00007 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 317

 Score = 39.0 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I ++    +S   + + A     +  R      ++    T  +            + +P
Sbjct: 88  SINMKADQTISGTALNLFAPAFAIFTARMIQGVQQIQFTDTFHI------------DKVP 135

Query: 387 LLSKIPILGALF 398
           +L  IP++G +F
Sbjct: 136 VLGDIPVIGDMF 147


>gi|301386028|ref|ZP_07234446.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060587|ref|ZP_07252128.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
           K40]
 gi|302129790|ref|ZP_07255780.1| tail fiber protein H, putative [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 780

 Score = 39.0 bits (89), Expect = 2.0,   Method: Composition-based stats.
 Identities = 44/346 (12%), Positives = 94/346 (27%), Gaps = 33/346 (9%)

Query: 19  SNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKAD 78
            NP VA +  I+    AV+ ++   +     + + L +  +  V    + V   D     
Sbjct: 190 LNPGVAYVEGIRLQLDAVLPVTVPAVPTKAWLDVVLQR-ELSDVVASFKVVFGQDAKIDY 248

Query: 79  VVVHSPRTMYL-FGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIR 137
               S R   +      G +++     D + +  +DI + +  A                
Sbjct: 249 TDSASARHYLVPLADITGTSSLT----DLRPIEAIDIELVKHFAA--------------- 289

Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
              V D   L     T +D      L          N     ++ +++N +  +   QV 
Sbjct: 290 --RVGDYPDLRARATTKEDVD-LGNLPNAISDDPNSNSGVVLATTRMVNAVR-SAISQVM 345

Query: 198 LKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFE 257
               I +    + + +          +G +       G    +     +  GV       
Sbjct: 346 --ALIVDGSTPVGRAVRLVTPRAIRFNGAASGIGTYDGASDTNITLTLADSGVAAGTYTR 403

Query: 258 TVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV-- 315
             ++       + +   PT  A  G + +++    +                 + G    
Sbjct: 404 VAVNL---KGLVTSGGNPTTLAGYGITDAYSKDDANSSFVKQGGGPGMLSNRINIGWTGD 460

Query: 316 -LHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTV 360
            L  +      GRI        ++      +            T V
Sbjct: 461 RLKVSVDGTDGGRIWTDTSFNPNDKANKATSLAGYGITDAHTITQV 506


>gi|294643589|ref|ZP_06721393.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
 gi|294808688|ref|ZP_06767422.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641084|gb|EFF59298.1| putative lipoprotein [Bacteroides ovatus SD CC 2a]
 gi|294444127|gb|EFG12860.1| putative lipoprotein [Bacteroides xylanisolvens SD CC 1b]
          Length = 523

 Score = 38.6 bits (88), Expect = 2.4,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 77/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++ L + ++    +A+L       +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            I  E   +   L+G           + + + FL +   ++  +
Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G       ++  G T       G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496


>gi|196231382|ref|ZP_03130241.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
           Ellin428]
 gi|196224718|gb|EDY19229.1| hypothetical protein CfE428DRAFT_3406 [Chthoniobacter flavus
           Ellin428]
          Length = 267

 Score = 38.6 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 52/189 (27%), Gaps = 17/189 (8%)

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V +++ +  V   I   +             +               G   +     +  
Sbjct: 59  VRIEMQVVAVPERIGIALMPDLKSKEKIEAANTRIQQMLAKGTAKLIGWPIMTTHTGQR- 117

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
              V+ A++          PTL       A   +         +     T+  T + GV 
Sbjct: 118 --AVIEAIKEIRWATEYHPPTLNVSE-VPADPPAKVTPSVDVSTLEAFPTAFETRNAGVT 174

Query: 316 LHFTPTVLSPGR----------IGLRIQTEVSEPVI---GVNAGDMPSYRVRKADTTVEL 362
           L   P +   G+          + L    +V+       G    + P +   K  T+  L
Sbjct: 175 LEVEPVIAPDGKTIDLNIVPQHVRLTGFKKVTIEGAAHKGKTIVEQPEFNTNKVTTSRRL 234

Query: 363 PSGGTIVLA 371
            +G  +++ 
Sbjct: 235 KNGERVLMG 243


>gi|295088172|emb|CBK69695.1| hypothetical protein [Bacteroides xylanisolvens XB1A]
          Length = 523

 Score = 38.6 bits (88), Expect = 2.5,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            I  E   +   L+G           + + + FL +   ++  +
Sbjct: 294 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G       ++  G T       G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496


>gi|298385858|ref|ZP_06995415.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298261086|gb|EFI03953.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 395

 Score = 38.2 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 28/281 (9%), Positives = 83/281 (29%), Gaps = 26/281 (9%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           M  ++R    +    L ++             +  V N  ++ I   +        + I+
Sbjct: 1   MNIMKRNLLYLAGFLLAAATVFSGCNDDDPSYHDLVPNTQELIINLDET---PEGIIQIV 57

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           Q   + + +  S+   A   +     + +     G  ++ +            I+ +   
Sbjct: 58  QGNGNYK-ITSSNEDVATA-IAEGNKIKVTALKAGSTDLSITDWAKMSTNVKVIVDQLSE 115

Query: 121 AHLEMTLRRFIADSN--IRVEMVSDTV--------VLHGMVRTIQDSQRAVELSETFLSQ 170
             L  +        N  + V   +           V+   V   +   +   L+    + 
Sbjct: 116 LVLSNSATTMYPGENKTVNVYTGNRGYKVTVDKESVVKATV-DEEGHIQIESLAPGNATV 174

Query: 171 SGRNQYANSSSK--KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSK 228
           +  ++   S+    KV+  L +   +++            + + +  +          + 
Sbjct: 175 TVTDRLNKSAEFSVKVIKKLVVDNSEEI--------AYLTVGEPLTIKILDGNGGYTCTN 226

Query: 229 SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAI 269
           + +A +    ++E G   +   L R+ F   +   ++    
Sbjct: 227 NGSATYLKCTIAENGTDVIIEGLKRYRFNKTVTIKDQEGES 267


>gi|237715223|ref|ZP_04545704.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262405067|ref|ZP_06081617.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|229444532|gb|EEO50323.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262355942|gb|EEZ05032.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
          Length = 516

 Score = 38.2 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/129 (10%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            I  E   +   L+G           + + + FL +   ++  +
Sbjct: 287 PFEYNGTADESLKILSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346

Query: 179 SSSKKVMNL 187
           +  ++ + L
Sbjct: 347 NDEERFLQL 355


>gi|330836048|ref|YP_004410689.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
           DSM 17374]
 gi|329747951|gb|AEC01307.1| nucleoside ABC transporter membrane protein [Spirochaeta coccoides
           DSM 17374]
          Length = 310

 Score = 38.2 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I LR    +S   I + A  +  Y  R     V   SG   ++ G+++ D       +P
Sbjct: 88  SINLRADQTISGTAINMLAAALTVYLAR-----VFSGSGNIRIMMGIVRSD-------VP 135

Query: 387 LLSKIPILGALFRNSRF 403
           +LSKIP+LG LF +  +
Sbjct: 136 VLSKIPVLGPLFFSQTY 152


>gi|262199490|ref|YP_003270699.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365]
 gi|262082837|gb|ACY18806.1| von Willebrand factor type A [Haliangium ochraceum DSM 14365]
          Length = 808

 Score = 38.2 bits (87), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/130 (14%), Positives = 51/130 (39%), Gaps = 11/130 (8%)

Query: 22  SVAKLPPIKEANAAVINISDVEIGKGKKIS-IGLN----KVIILQVPVDVQDVLVSDPTK 76
           + A  P    A++ +   +D  I     +  +G+     + +++     + +V  +DP+ 
Sbjct: 30  APALEPDPAAADSPIALATDHLITVSGNVETLGVGYHTEEGLLVNTNDALFEVEAADPSI 89

Query: 77  ADVVV-----HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH-LEMTLRRF 130
            +         SP  + + G + G   + +   D  + +++ +L +  ++  LE T    
Sbjct: 90  VEAETERTHESSPPALIVRGLSPGTTELTVRLFDATRTMHVTVLPQTILSGKLETTTVEL 149

Query: 131 IADSNIRVEM 140
            +D    +  
Sbjct: 150 DSDETAEIGT 159


>gi|293604519|ref|ZP_06686924.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
 gi|292817100|gb|EFF76176.1| lipoprotein [Achromobacter piechaudii ATCC 43553]
          Length = 542

 Score = 38.2 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 84/260 (32%), Gaps = 36/260 (13%)

Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDF 245
           N         V  ++T+  V++      G   +   +++G S  +AA       +   + 
Sbjct: 288 NKAMTRRVRLVFEEITVI-VKQSAAG--GLDWNALYAAAGSSARYAAPAAAALGASTLEA 344

Query: 246 SVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT 305
           ++ G       + V+ AL    AI    +  +  ++ +  +        Y     ST   
Sbjct: 345 TL-GRGALQGSQAVISALSTMGAIVRHNKVPVLTLNRRPVTHAIRTTFSYIDRVQSTAVP 403

Query: 306 SVT----------------THDYGVVLHFTPTVLSPGRIGLRIQTE--VSEPVIGVNAG- 346
            +T                    G  L   P +   G+I L +  +  V++P+  +  G 
Sbjct: 404 GMTAAGANGSLPAVSITQKEETVGSFLTLVPDIQPDGQILLSVAYDNAVAQPLKTIMFGE 463

Query: 347 -------DMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGI-PLLSKIPILGALF 398
                     +         +EL  G  ++L+G  +   Q   + + P    +P++  + 
Sbjct: 464 RGNQVQVQQITIDGNGTVQQIELRPGQPVILSGFDRSTDQHSGQRLAPG---MPLI--MG 518

Query: 399 RNSRFNREETEIFIAATPFL 418
                 +E     +  T  +
Sbjct: 519 GQDSAEQERETTLMLVTAQV 538


>gi|32472568|ref|NP_865562.1| heme/hemopexin utilization protein huxA [Rhodopirellula baltica SH 1]
 gi|32443804|emb|CAD73246.1| conserved hypothetical protein-possibly heme/hemopexin utilization
            protein huxA [Rhodopirellula baltica SH 1]
          Length = 4254

 Score = 38.2 bits (87), Expect = 3.1,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 57/175 (32%), Gaps = 6/175 (3%)

Query: 216  QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH---ALERATAIRTL 272
              S   + +G +    A+    F+  G   S    +D       ++    + ++  +R  
Sbjct: 3785 DWSDPNNWAGGAIPDLANVANVFLPAGVTPSFNNTVDGPVEIESINGDNLIVQSGTLRIE 3844

Query: 273  AEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRI 332
             + +L  +  Q+         L   V +    T        V+  FT      G I    
Sbjct: 3845 NDASLD-LLNQTGGTLQFDGGLGVAVLNQQSGTLDLAGTLSVLQEFT--QALGGVIEAIG 3901

Query: 333  QTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPL 387
              E+++    ++  ++    V    T  ++  G  I L GL  D      + +P 
Sbjct: 3902 NIEITQSSGTLDVRNLSGTHVELNATNGDVQVGDIIALGGLNIDANSGNIDQLPG 3956


>gi|332297783|ref|YP_004439705.1| protein of unknown function DUF342 [Treponema brennaborense DSM
           12168]
 gi|332180886|gb|AEE16574.1| protein of unknown function DUF342 [Treponema brennaborense DSM
           12168]
          Length = 657

 Score = 38.2 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 48/345 (13%), Positives = 97/345 (28%), Gaps = 26/345 (7%)

Query: 21  PSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV 80
           P   K+ P +      I    +E   G+ I++ L K +I+                  ++
Sbjct: 297 PLAQKMLPERGKAGKTIFGRYLEAKNGRDINLPLGKNVIVDTDGR------------TIL 344

Query: 81  VHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEM 140
                 + L G  +          +    L    +   +I  L   + +   D    V+ 
Sbjct: 345 AAMNGQVLLIGDKI--------NVEPIMELENVSIKTGNITFLGTVIVKGNVDDGFNVKA 396

Query: 141 VSDTVVLHGMV--RTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTL 198
             + + ++G V   +++     +          G  +   S   K +    ++ E+ V +
Sbjct: 397 SGN-IEIYGTVGKSSLEAGGDIIVSLGIMGRDEGTIRAGKSLWAKFIQNTTVSVEEYVIV 455

Query: 199 KVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFET 258
              I        K+I  Q     +  G       +   K +   G  S   +   F  E 
Sbjct: 456 ADGIINSNVTARKRIMLQ-GKRAAIIGGHLFATEEISAKSIGSNGGGSETILEVGFDPEA 514

Query: 259 VLHALERATAIRTLAEPTLTAISGQSA--SFTSGGQHLYKTVSSSTGATSVTTHDYGVVL 316
            +  LE      +LA+ +           +     + L      S G  S    +     
Sbjct: 515 KMRLLELTEKRNSLAKESEEVNLNIQTLENMKKVRRSLPPEKEESLGKFSSRRAEIAAET 574

Query: 317 HFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVE 361
               T +   +  LR    + +  +           VR     V 
Sbjct: 575 EKLDTEIQDIQNHLRELKVIGKVSVSGTVYAGVKIFVRDVKDDVR 619


>gi|159039589|ref|YP_001538842.1| transport-associated [Salinispora arenicola CNS-205]
 gi|157918424|gb|ABV99851.1| transport-associated [Salinispora arenicola CNS-205]
          Length = 213

 Score = 38.2 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 53/151 (35%), Gaps = 28/151 (18%)

Query: 30  KEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD--VLVSDPTK----------- 76
             A+   +     E    ++I I +++ +     V  +   V V++              
Sbjct: 58  AVADELEVRPPGDERYTDREIGIAVSRALEWDSFVPAERLDVTVANGWVILRGDVEFGWQ 117

Query: 77  ---ADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIAD 133
              A+  V   R +       G  N++     G          ER    ++  L R +  
Sbjct: 118 RRTAEAEVRRLRGVR------GVTNLVAARPAGAA------DGERIRREVQRALSRGLGT 165

Query: 134 SNIRVEMVSDTVVLHGMVRTIQDSQRAVELS 164
             + V++   TVVL+G+VR+  +  +A   +
Sbjct: 166 ERVTVDVDGSTVVLNGVVRSWWERDQAERTA 196


>gi|220928834|ref|YP_002505743.1| inner-membrane translocator [Clostridium cellulolyticum H10]
 gi|219999162|gb|ACL75763.1| inner-membrane translocator [Clostridium cellulolyticum H10]
          Length = 313

 Score = 38.2 bits (87), Expect = 3.2,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 15/78 (19%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKE--G 384
            I LR    VS   + +      S+             G  + +   L D ++       
Sbjct: 84  TITLRANQIVSGLSLTIFGAGFSSFL------------GQKL-IGQALSDSVRNSFTPVK 130

Query: 385 IPLLSKIPILGALFRNSR 402
           IPLL  IPILG+ F +  
Sbjct: 131 IPLLGDIPILGSAFFHQN 148


>gi|164687316|ref|ZP_02211344.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM
           16795]
 gi|164603740|gb|EDQ97205.1| hypothetical protein CLOBAR_00957 [Clostridium bartlettii DSM
           16795]
          Length = 323

 Score = 38.2 bits (87), Expect = 3.3,   Method: Composition-based stats.
 Identities = 39/256 (15%), Positives = 87/256 (33%), Gaps = 25/256 (9%)

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDI 120
           ++  + + V+V D   AD++           KN+G   V+ +  +GK    L    +   
Sbjct: 56  ELKKNPKRVVVFDYGVADIL-----------KNLGVDAVVGLPKNGKMPEILSNYSDDKY 104

Query: 121 AHLEMTLRRFIADSNIRVEMVSDTVVLHG--MVRTIQDSQRAVELSETFLSQSGRNQYAN 178
            ++              VE ++  +++ G      I   +         +          
Sbjct: 105 TNVGSLKETDFEA----VESLNPDLIIIGGRQAEDIDSFKEIAPTVNLAVDGQDYMNSFK 160

Query: 179 SSSKKVMNLLNIAGEDQV---TLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFG 235
           +    + NL +   E +     ++  IA+V + + ++ G   S+  ++ G    F+A   
Sbjct: 161 TVVTDLGNLFDKQDEAKKAIDEIEAKIAKVNKTVTEK-GLTASVVMANEGSISVFSAKSR 219

Query: 236 GKFVSEGGDFS-VKGVLDRFSFETVLH---ALERATAIRTLAEPTLTAISGQSASFTSGG 291
              +  G  F+     +D  +    +     LE  +    + +       G++AS     
Sbjct: 220 YGLIYNGLGFTEADKNIDDSTHGQQVSFEYFLENKSDYVFVVDRGAVTGKGEAASKLFDN 279

Query: 292 QHLYKTVSSSTGATSV 307
           + + KT  S  G    
Sbjct: 280 EVMNKTEVSKNGNIVY 295


>gi|160885633|ref|ZP_02066636.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483]
 gi|156109255|gb|EDO11000.1| hypothetical protein BACOVA_03636 [Bacteroides ovatus ATCC 8483]
          Length = 514

 Score = 37.8 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 14/129 (10%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           D     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 225 DEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            I  E   +   L+G           + + + FL +   ++  +
Sbjct: 285 PFEYNGTADESLKNLSTITFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 344

Query: 179 SSSKKVMNL 187
           +  ++ + L
Sbjct: 345 NDEERFLQL 353


>gi|328887424|emb|CCA60663.1| hypothetical protein SVEN_7377 [Streptomyces venezuelae ATCC 10712]
          Length = 3543

 Score = 37.8 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 58/378 (15%), Positives = 101/378 (26%), Gaps = 51/378 (13%)

Query: 6    RTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVD 65
            RT    +   +  + P     P    A  A    +   +G+    +  L +         
Sbjct: 2326 RTEVDRLGRAVAVTLPDY-TPPGAATAITATSRTAYDGLGRTVSRTDPLGRTTSYAYDQL 2384

Query: 66   VQDVLVSDPTKADVV----VHSPRTMYLFGKNV----GQANVILIGHDGKQMLNLDILIE 117
               V V+DP   D V    + SP   Y  G +     G  +       G Q+ + D    
Sbjct: 2385 GNLVSVTDPAVDDTVGTAALQSPGAGYFDGGSQALGGGAVSTFTWTPTGLQLSSTDQTGS 2444

Query: 118  RDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYA 177
            R  A  +   R+                       TI+   +A  L+  F      NQ  
Sbjct: 2445 RSEATYDELGRQL-------------------TATTIERRPQAQTLTSRFTWDDAGNQTR 2485

Query: 178  NSSSKKVMNLLNIAGEDQVTLKVTIAE----VRRDILKQIGFQHSIT---GSSSGPSKSF 230
            +++             DQV     + +    V       +G         G  +  +   
Sbjct: 2486 STTPSGRTTRTEYNAADQVL---KVIDPAGGVTTSAYDGLGRLIETKDPTGRRATTAYDA 2542

Query: 231  AADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRT---------LAEPTLTAIS 281
            +           G   ++     +  +  L A   A   RT         L +  L   +
Sbjct: 2543 SGLPVSTTDYGTGSTPLRTATSEYDADGNLTAAVDANGARTTYGYDALGQLTKQVLPVSA 2602

Query: 282  GQSASFTSGGQHLYKTVSSSTGATSVTTHDYGV----VLHFTPTVLSPGRIGLRIQTEVS 337
             +S + T G          + G    T + + V         P         +R  T V 
Sbjct: 2603 TKSITTTFGYDAAGNRTRLTDGRGKATYYTFNVWGLPESTIEPATSQHWTADVRTWTTVY 2662

Query: 338  EPVIGVNAGDMPSYRVRK 355
            +         +P    R+
Sbjct: 2663 DAAGRPVTELLPGNVKRQ 2680


>gi|302387358|ref|YP_003823180.1| Cna B domain protein [Clostridium saccharolyticum WM1]
 gi|302197986|gb|ADL05557.1| Cna B domain protein [Clostridium saccharolyticum WM1]
          Length = 1610

 Score = 37.8 bits (86), Expect = 4.3,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 50/160 (31%), Gaps = 13/160 (8%)

Query: 216  QHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT--AIRTLA 273
                   + G         G   +S G   ++ G+    S+    +           T +
Sbjct: 1300 NFYSFTGTGGIPNGTIQSGGTVSLSGGQSVTITGLPKDTSYSVTENDYSANGYSTASTGS 1359

Query: 274  EPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
               +     Q+ASF +          S T A + TT  +   + FT        +     
Sbjct: 1360 SGIVRTDEEQTASFVNTKTMPGSLTISKTVAGTSTTKKFDFKVIFT---KPDKTVD---- 1412

Query: 334  TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGL 373
               + P      G+ P+  +R  DT + L  G  I + GL
Sbjct: 1413 ---TAPYKFTGRGEFPTDEIRSGDT-ISLADGENITITGL 1448


>gi|308813113|ref|XP_003083863.1| unnamed protein product [Ostreococcus tauri]
 gi|116055745|emb|CAL57830.1| unnamed protein product [Ostreococcus tauri]
          Length = 1184

 Score = 37.8 bits (86), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 5/78 (6%)

Query: 17  FSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQD-----VLV 71
             +  S     P   A  A   +       G  +S     V  ++    +       V  
Sbjct: 30  VCAAKSTTASTPPTPAGDARPRVVVSGDRAGPTMSSPTAPVPRVETASTIGTCDVSNVAC 89

Query: 72  SDPTKADVVVHSPRTMYL 89
            +   AD  V S   +Y+
Sbjct: 90  VNTDVADAEVLSAFAVYV 107


>gi|308067708|ref|YP_003869313.1| hypothetical protein PPE_00926 [Paenibacillus polymyxa E681]
 gi|305856987|gb|ADM68775.1| Conserved hypothetical protein [Paenibacillus polymyxa E681]
          Length = 1350

 Score = 37.4 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 41/124 (33%), Gaps = 14/124 (11%)

Query: 35  AVINISDVEIGKGKKISIGLNKV-IILQVPVDVQD---------VLVSDPTKADVVVHSP 84
            + N S V       + + L K    + +     D         +  SDP  AD  V + 
Sbjct: 819 PIPNSSPVVTRAPDAVHLILGKADGTVDLSTIFADPDHDPIRYEISSSDPAVADATVQND 878

Query: 85  RTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDT 144
             + + G   G   + +   D +     +I  +  +  LE  +   I +  ++    +  
Sbjct: 879 -QLVIHGLTSGNTVITITAKDDR---GGEISTDLQVHLLENAVITAIPEQLLQWGDAASE 934

Query: 145 VVLH 148
           + L 
Sbjct: 935 LDLS 938


>gi|254520856|ref|ZP_05132912.1| ABC transporter [Clostridium sp. 7_2_43FAA]
 gi|226914605|gb|EEH99806.1| ABC transporter [Clostridium sp. 7_2_43FAA]
          Length = 315

 Score = 37.4 bits (85), Expect = 4.7,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   V  G +  D       IP
Sbjct: 88  SINLNANQVISGTAINMIAGALTVFLARNIT-----GSGNIRVTNGFIPKD-------IP 135

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +LS+IPI+G LF    +    T + I  
Sbjct: 136 VLSQIPIIGPLFFTKTYAT--TWLVIVI 161


>gi|326790705|ref|YP_004308526.1| ABC transporter transmembrane protein [Clostridium lentocellum DSM
           5427]
 gi|326541469|gb|ADZ83328.1| ABC-type transporter, integral membrane subunit [Clostridium
           lentocellum DSM 5427]
          Length = 317

 Score = 37.4 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L+    +S   I + A  +  +  R         SG  ++  GL K +       + 
Sbjct: 90  SINLQADQTISGTAINMIAAGLTIFLARNIT-----GSGNIVLTVGLAKQN-------VK 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIA 413
           +LS IPILG LF  + ++     + I 
Sbjct: 138 VLSSIPILGPLFFTNSYSTTWLVLLIL 164


>gi|222081092|ref|YP_002540455.1| hypothetical protein Arad_7335 [Agrobacterium radiobacter K84]
 gi|221725771|gb|ACM28860.1| conserved hypothetical protein [Agrobacterium radiobacter K84]
          Length = 97

 Score = 37.4 bits (85), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 21/51 (41%)

Query: 131 IADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSS 181
           +  S I V     T+VL G+  + Q  + A+ ++  +      N  A  + 
Sbjct: 33  LEGSRIDVTATEGTIVLSGVATSDQARETAIAIAGEYAGNRVVNNIATQAD 83


>gi|156057445|ref|XP_001594646.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154702239|gb|EDO01978.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 612

 Score = 37.4 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 42/178 (23%), Gaps = 9/178 (5%)

Query: 185 MNLLNIAGEDQVTLKVTIAEV--RRDILKQIGFQHSITGSSSGPSKSFAADFGGKF---V 239
           +N L      QV      A +     +L+          +         A         +
Sbjct: 34  INGLVHRQPAQVWKHSKYARMFSSSTLLRDQSQTAPSAEAYLNSGVVKGAANPVNVKKVL 93

Query: 240 SEGGDFSVKGVLDRFSFET--VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT 297
             G      G    F +     L AL+ A     L  P +  I  Q+A   +   +    
Sbjct: 94  VIGSGGLSIGQAGEFDYSGSQALKALKEAGVASVLINPNIATI--QTAHVLTDEVYYLPV 151

Query: 298 VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRK 355
                          G+ L F         + +          + V    + +    +
Sbjct: 152 TPEYVTYVIERERPDGIFLTFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSE 209


>gi|209965643|ref|YP_002298558.1| phospholipid-binding domain protein, putative [Rhodospirillum
           centenum SW]
 gi|209959109|gb|ACI99745.1| phospholipid-binding domain protein, putative [Rhodospirillum
           centenum SW]
          Length = 349

 Score = 37.4 bits (85), Expect = 5.6,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 13/91 (14%)

Query: 105 DGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVE 162
            G+   N      R +  +   L     +  S+I V   +  V L G V + QD +RA +
Sbjct: 203 RGRGPRNYTRSDSRIVEDVNDRLTDDFRLDASDIDVSAENGEVTLSGHVNSRQDKRRAED 262

Query: 163 LSETFLSQSGRNQYANSSSKKVMNLLNIAGE 193
           L+E+                 V N L +   
Sbjct: 263 LAESVSGVR-----------HVQNNLRVRDR 282


>gi|146279408|ref|YP_001169566.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557649|gb|ABP72261.1| hypothetical protein Rsph17025_3381 [Rhodobacter sphaeroides ATCC
           17025]
          Length = 343

 Score = 37.4 bits (85), Expect = 5.8,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 55/207 (26%), Gaps = 3/207 (1%)

Query: 136 IRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQ 195
           I ++      VL  M+    D   A  L++   +   +     S    V   +  A E  
Sbjct: 75  ICIDARHANGVLK-MMPNKTDRHDARGLAQIVRTGWFKAAQIKSHDAYVNRAMLTAREAL 133

Query: 196 VTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFS 255
           V ++V +    R +LK  G                        V +        +  R  
Sbjct: 134 VGMRVRLENEIRGLLKTFGIMFGKRVGGFKRRAEEIIRDELTVVPDLVPIFEALMQARRD 193

Query: 256 FETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVV 315
               + AL   + IR +A    T     +A        +    +    +    +   G  
Sbjct: 194 ILARIAAL--DSRIRAVARRHATVRLLMTAPGVGPITAMAVVAAFDDASRFRRSSSAGAY 251

Query: 316 LHFTPTVLSPGRIGLRIQTEVSEPVIG 342
           L  TP     G I    +         
Sbjct: 252 LGLTPRRYESGEISRNGRVSKRGDAFT 278


>gi|187926467|ref|YP_001892812.1| transport-associated [Ralstonia pickettii 12J]
 gi|241665954|ref|YP_002984313.1| transport-associated [Ralstonia pickettii 12D]
 gi|187728221|gb|ACD29385.1| transport-associated [Ralstonia pickettii 12J]
 gi|240867981|gb|ACS65641.1| transport-associated [Ralstonia pickettii 12D]
          Length = 138

 Score = 37.0 bits (84), Expect = 6.0,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 14/100 (14%)

Query: 101 LIGHDGKQMLNLDILIERDIAHLEMTLRR--FIADSNIRVEMVSD-TVVLHGMVRTIQDS 157
             G          +        ++  L +   ++   IR+    D  V+L G V T + +
Sbjct: 28  AWGDSPNTAGARMLDDSLLTYQVKAALDQDTALSTRQIRIRSSPDGKVILTGWVDTPEMA 87

Query: 158 QRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVT 197
           +RA +  + F+  +           K+ N L +    QV 
Sbjct: 88  RRAGDDVKRFVDSA-----------KLDNQLRVLSRMQVL 116


>gi|326383816|ref|ZP_08205501.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395]
 gi|326197580|gb|EGD54769.1| MFS transporter [Gordonia neofelifaecis NRRL B-59395]
          Length = 757

 Score = 37.0 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 9/197 (4%)

Query: 13  SIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQ------VPVDV 66
           S  L    P +  +       A       V  G   +    L    +L+      V    
Sbjct: 544 SYALAGLEPGMYTVIATAADRAPRAVSVAVVDGAVLRRDFSLEGGAVLRGVVGDGVRNLP 603

Query: 67  QDVLVSD---PTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHL 123
             V+V+D      A     +     L G + G+   +     G Q  +  + ++  +   
Sbjct: 604 ASVVVTDQQGEVVAQTKAGADGVFVLTGLSDGETVAVTATAPGYQPSSRLVTVDGRMTGP 663

Query: 124 EMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKK 183
                    +    V  +   ++    V  I   Q  V    T      R +  + +   
Sbjct: 664 VEFGLTAHGNVQGYVRAIGGGLLAGATVSAIGPDQTIVAAVRTDSDGWYRIEGLDDARYT 723

Query: 184 VMNLLNIAGEDQVTLKV 200
           ++  +      QV++  
Sbjct: 724 LVASMYEPQARQVSVAA 740


>gi|308049903|ref|YP_003913469.1| hypothetical protein Fbal_2192 [Ferrimonas balearica DSM 9799]
 gi|307632093|gb|ADN76395.1| conserved hypothetical protein [Ferrimonas balearica DSM 9799]
          Length = 994

 Score = 37.0 bits (84), Expect = 6.3,   Method: Composition-based stats.
 Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 24/154 (15%)

Query: 70  LVSDPTKA-------DVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
            V  P+ A       DVV   P T  +   N G  NV +      +  +   ++   +  
Sbjct: 589 AVGTPSFAISHGSDQDVVAVDPHTGIVTVLNAGTTNVTVTDPGDAKTGSYRQMVTVTVNK 648

Query: 123 LEMTLRRFIADSNIRVEMVS---DTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANS 179
                   +A   I+        +   L G+      S    + ++  ++          
Sbjct: 649 GATNPNLKLASERIQGVYGQLPLEAPRLSGVEPDAWVSYWIEDAAQRQIA---------- 698

Query: 180 SSKKVMNLLNIAGEDQV-TLKVTIAEVRRDILKQ 212
              ++ +   +    Q   ++VT+ E  R+    
Sbjct: 699 ---QIDSRTGVVTPQQAGIVEVTVTEHSRNYEDS 729


>gi|108763400|ref|YP_629627.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
 gi|108467280|gb|ABF92465.1| hypothetical protein MXAN_1370 [Myxococcus xanthus DK 1622]
          Length = 192

 Score = 37.0 bits (84), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/54 (14%), Positives = 24/54 (44%)

Query: 64  VDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIE 117
            + + V V      +  +  P  + + G ++G + V++     +Q L++ + + 
Sbjct: 138 ENAERVRVQSSAVVEASLGEPNQIMVQGLSLGVSEVLVWRQGSRQPLSVRVEVA 191


>gi|289679099|ref|ZP_06499989.1| general secretion pathway protein D [Pseudomonas syringae pv.
           syringae FF5]
          Length = 60

 Score = 37.0 bits (84), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/45 (15%), Positives = 14/45 (31%)

Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGK 237
             QV ++  I EV+      +G Q  +   +     +        
Sbjct: 14  PLQVQIETRILEVQLTGELDMGVQWYLGRLAGNSGTTGNVTNTAG 58


>gi|18310559|ref|NP_562493.1| ABC transporter [Clostridium perfringens str. 13]
 gi|18145240|dbj|BAB81283.1| probable ABC transporter [Clostridium perfringens str. 13]
          Length = 317

 Score = 37.0 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 14/88 (15%)

Query: 327 RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
            I L     +S   I + AG +  +  R         SG   ++ G +  D       +P
Sbjct: 90  SINLNADQVISGTAINMIAGALTVFLARNMT-----GSGNIRIMQGFIPKD-------VP 137

Query: 387 LLSKIPILGALFRNSRFNREETEIFIAA 414
           +L  IPI+G LF +  +    T + I  
Sbjct: 138 VLCSIPIIGDLFFSKTYAT--TWLVILI 163


>gi|313498035|gb|ADR59401.1| NolW domain protein [Pseudomonas putida BIRD-1]
          Length = 246

 Score = 37.0 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 17/132 (12%)

Query: 261 HALERATAIRTLA---------EPTLTAISGQSASFTSGGQHLYKTVSSSTG---ATSVT 308
           +  +     R +             + A  GQ A    G      + S+       ++  
Sbjct: 94  NFQDNRGNARVIHYGTSNRDGGMQQVQASEGQPALIQVGQSIPITSTSTDGYGRIQSNTE 153

Query: 309 THDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTI 368
             +     + TP++         ++ E+S     ++       +V+  DTTV    G  I
Sbjct: 154 YRNVTQGFYVTPSLSGE-----TVRLEISSNNDRISHERADVVKVQSTDTTVTGKLGEWI 208

Query: 369 VLAGLLKDDIQQ 380
            LAG  +     
Sbjct: 209 TLAGFNQQSQAD 220


>gi|260172051|ref|ZP_05758463.1| hypothetical protein BacD2_09316 [Bacteroides sp. D2]
          Length = 521

 Score = 37.0 bits (84), Expect = 7.0,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++ L + ++    +A+L       +
Sbjct: 232 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 291

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            +  E   +   L+G           + + + FL +   ++  +
Sbjct: 292 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 351

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 352 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 409

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 410 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 467

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G       ++  G T       G
Sbjct: 468 EDKDGMVANWLFNNGNGNTKTFVSLAG 494



 Score = 36.6 bits (83), Expect = 8.6,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%)

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
           L G   G   V    H GKQ +    +    I    +T R  + +   I VE  +    L
Sbjct: 169 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 228

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                 I   Q+  +     + +              +  + +  E +  L +T+  V+ 
Sbjct: 229 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 277

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           D +  +G  +           +  +      ++    F+++ +    +    ++
Sbjct: 278 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 331


>gi|293371632|ref|ZP_06618043.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
 gi|292633329|gb|EFF51899.1| putative lipoprotein [Bacteroides ovatus SD CMC 3f]
          Length = 523

 Score = 37.0 bits (84), Expect = 7.4,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQM-LNLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++ L + ++    +A+L       +
Sbjct: 234 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 293

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            +  E   +   L+G           + + + FL +   ++  +
Sbjct: 294 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 353

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 354 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 411

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 412 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 469

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G       ++  G T       G
Sbjct: 470 EDKDGMVANWLFNNGNGNTKTFVSLAG 496



 Score = 36.6 bits (83), Expect = 9.0,   Method: Composition-based stats.
 Identities = 24/174 (13%), Positives = 55/174 (31%), Gaps = 12/174 (6%)

Query: 89  LFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADS-NIRVEMVSDTVVL 147
           L G   G   V    H GKQ +    +    I    +T R  + +   I VE  +    L
Sbjct: 171 LTGLKNGHTTVTFTDHKGKQAVVQVTVNPISIDVSNLTPRVGVNNKIMITVEKGNGGYSL 230

Query: 148 HGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207
                 I   Q+  +     + +              +  + +  E +  L +T+  V+ 
Sbjct: 231 TAENEEIVAIQQVDDTRFNLIGKKAG-----------ITTVFVRDEAEQELSLTVTVVQA 279

Query: 208 DILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLH 261
           D +  +G  +           +  +      ++    F+++ +    +    ++
Sbjct: 280 DKVANLGSGNYFKVPFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARIN 333


>gi|299147493|ref|ZP_07040558.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23]
 gi|298514771|gb|EFI38655.1| hypothetical protein HMPREF9010_04168 [Bacteroides sp. 3_1_23]
          Length = 516

 Score = 36.6 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 77/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            +  E   +   L+G           + + + FL +   ++  +
Sbjct: 287 PFEYNGMADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSER--IALYVNGVRETL 404

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G     + ++  G T       G
Sbjct: 463 EDKDGMVANWSFNNGNGNTKTFVSLAG 489


>gi|237719594|ref|ZP_04550075.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229450863|gb|EEO56654.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 516

 Score = 36.6 bits (83), Expect = 8.0,   Method: Composition-based stats.
 Identities = 28/267 (10%), Positives = 76/267 (28%), Gaps = 30/267 (11%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 227 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 286

Query: 132 ADS-------------NIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYAN 178
                            +  E   +   L+G           + + + FL +   ++  +
Sbjct: 287 PFEYNGTADESLKNLSTLTFEARFNIESLNGNDNGNARINTVMGIEKKFLLRVDVHKGGS 346

Query: 179 SSSKKVMNLL-----NIAGEDQVTLK-------VTIAEVRRDILKQIGFQHSITGSSSGP 226
           +  ++ + L      +I  E    ++         + +  +   ++      + G     
Sbjct: 347 NDEERFLQLAADDKGSIRYEGSTKIETNKWYDVAVVLDNSKSGSQR--IALYVNGVRETL 404

Query: 227 SKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSAS 286
             S       K ++   DF +     +      +         + L++  ++  SG+  S
Sbjct: 405 QLSNGTPDDLKEINLTSDFYIGQSDGKRRLNGAIS--YARIWTKALSDQQISEQSGKLLS 462

Query: 287 FTSGGQHLYKTVSSSTGATSVTTHDYG 313
               G       ++  G T       G
Sbjct: 463 EDKDGMVANWLFNNGNGNTKTFVSLAG 489


>gi|326431310|gb|EGD76880.1| hypothetical protein PTSG_08227 [Salpingoeca sp. ATCC 50818]
          Length = 595

 Score = 36.6 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 87/285 (30%), Gaps = 34/285 (11%)

Query: 97  ANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQD 156
            +  L   D  +   +++ +           R   +    R ++ + T    G    I  
Sbjct: 136 TSFHLFYDDPSRADYVEVSLPATATTYTA--RHLFSGRPYRFQIFASTGAGEGPHTPILV 193

Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
           ++ A  L+E   +        +SSS   +   +I+G +QVT +V   E  +         
Sbjct: 194 TETAQSLTERVATAHRATSSQSSSSTSTVPG-SISGREQVTSRVQFVEEAK--------- 243

Query: 217 HSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPT 276
                 +     S  A       +      V G L R +               T+A   
Sbjct: 244 -----PTPITRGSLTAMIPAGPRTSTRAQDVAGQLGRTTLS---------EEAETVATGN 289

Query: 277 LTAISGQSASFTSGGQH---LYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333
            TA+ G++ +  S         +  +S   A + +    G  L   P   S     L+  
Sbjct: 290 DTALPGETTANRSEDTRAGTPPQDDASKQDAGTGSRRKPGFTL-MAPRSTSDQPSVLQRW 348

Query: 334 TEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
               +   G           R+  T VE+ +G  +     ++ D 
Sbjct: 349 QHGQDKDSGQGGQA----SARQKPTRVEVLTGNQVSRGAFVRQDT 389


>gi|258645547|ref|ZP_05733016.1| putative outer membrane efflux protein [Dialister invisus DSM
           15470]
 gi|260402903|gb|EEW96450.1| putative outer membrane efflux protein [Dialister invisus DSM
           15470]
          Length = 502

 Score = 36.6 bits (83), Expect = 8.1,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 10/119 (8%)

Query: 123 LEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSK 182
           L+  L   + +  ++ E  +  + L G V T   + R + L+E  L Q+       +++K
Sbjct: 71  LQKNLNDMMPEGKVKAETSNIDIDLKGAVSTAIQNNRDIRLAELSLEQAETAVSQAAAAK 130

Query: 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSE 241
              +L      +QV         +       GF  +  G + G + S+    GG     
Sbjct: 131 N-PSLSYKWARNQV---------KAGSANSAGFYGANHGYNQGLTLSWPIWTGGAVEGA 179


>gi|315920361|ref|ZP_07916601.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694236|gb|EFS31071.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 514

 Score = 36.6 bits (83), Expect = 8.7,   Method: Composition-based stats.
 Identities = 7/63 (11%), Positives = 19/63 (30%), Gaps = 1/63 (1%)

Query: 73  DPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQML-NLDILIERDIAHLEMTLRRFI 131
           +     +         L GK  G   V +     +++   + ++    +A+L       +
Sbjct: 225 NEEIVAIQQVDDTRFNLIGKKAGITTVFVRDEAEQELSLTVTVVQADKVANLGSGNYFKV 284

Query: 132 ADS 134
              
Sbjct: 285 PFE 287


>gi|325289184|ref|YP_004265365.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
            8271]
 gi|324964585|gb|ADY55364.1| S-layer domain-containing protein [Syntrophobotulus glycolicus DSM
            8271]
          Length = 1618

 Score = 36.6 bits (83), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 6/101 (5%)

Query: 25   KLPPIKEANAAVINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVV---V 81
                     +   N   V  G     ++ L + +         D+ V++ + A V    V
Sbjct: 979  TTVAEPRTPSVSANTLTVNKGATASFTVSLGQGV---SAATAADITVANGSIASVSTGRV 1035

Query: 82   HSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAH 122
             +  T+ + G   G   +I+  HD  Q +    +    ++ 
Sbjct: 1036 TASGTVTVTGLAAGTTGIIVTFHDSAQTVKNIAVTVNAVSD 1076


>gi|84684255|ref|ZP_01012157.1| efflux transporter, RND family, MFP subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84668008|gb|EAQ14476.1| efflux transporter, RND family, MFP subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 490

 Score = 36.6 bits (83), Expect = 9.9,   Method: Composition-based stats.
 Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 17/207 (8%)

Query: 1   MRYLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEIGKGKKISIGLNKVIIL 60
           MR+L+R+   +    L  +   +A           +   S     + +  S+ L      
Sbjct: 1   MRFLRRSLTGLFLAALTVAGLGLAAYIVRDAVETRMARTSGSMPARERVYSVAL------ 54

Query: 61  QVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD---GKQMLNLDILIE 117
              V VQ   VS   +A   V S RT+ +  +  G   V+ +G +   G ++ +  +L+ 
Sbjct: 55  ---VPVQSQTVSPVLEAFGEVVSRRTLEIRARTAG--TVVELGENFVEGGRVQSGQMLVR 109

Query: 118 RDIAHLEMTL---RRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRN 174
            D + LE  +   R  +AD+   V      ++L          Q  +  +     Q   +
Sbjct: 110 IDPSDLEDAVALARADMADAEAEVSDAEAALILEQDDLASAQRQFELRQTAATRQQDLLD 169

Query: 175 QYANSSSKKVMNLLNIAGEDQVTLKVT 201
           +    ++      L  +  +Q  L   
Sbjct: 170 RGVGLAADLETARLAESSAEQAVLSAR 196


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.308    0.128    0.321 

Lambda     K      H
   0.267   0.0394    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,915,480,935
Number of Sequences: 14124377
Number of extensions: 115538502
Number of successful extensions: 424896
Number of sequences better than 10.0: 4280
Number of HSP's better than 10.0 without gapping: 3519
Number of HSP's successfully gapped in prelim test: 761
Number of HSP's that attempted gapping in prelim test: 411526
Number of HSP's gapped (non-prelim): 6351
length of query: 474
length of database: 4,842,793,630
effective HSP length: 143
effective length of query: 331
effective length of database: 2,823,007,719
effective search space: 934415554989
effective search space used: 934415554989
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 83 (36.6 bits)