RPSBLAST alignment for GI: 254780727 and conserved domain: TIGR02515

>gnl|CDD|162898 TIGR02515, IV_pilus_PilQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. Length = 418

 Score = 77.7 bits (192), Expect = 6e-15
 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%)

Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319
           L ALE       ++ P +   + + A    G +  Y   +SS+GATSV   +  + L  T
Sbjct: 258 LSALESEGRGEIISSPRVVTANNKKAKIKQGTEIPY-QQTSSSGATSVEFKEAVLSLEVT 316

Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376
           P +   GRI + +   VS+   GV A   G +P+   ++ +T V + +G T+V+ G+ + 
Sbjct: 317 PQITPDGRIIMDLL--VSKDSPGVVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQ 374

Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420
                ++ +P L  IP+LG LF+ +  + E++E+ I  TP +V 
Sbjct: 375 TQTNSEDKVPFLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418