>gnl|CDD|162900 TIGR02517, type_II_gspD, general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). Length = 594

Score = 115 bits (291), Expect = 2e-26 Identities = 73/266 (27%), Positives = 112/266 (42%), Gaps = 32/266 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFV- 239 QV ++ I EV D ++G Q I G S S S +A G Sbjct: 330 AQVLVEAIIVEVSLDDALELGVQWLIAGTGGGVNFSTGSPNSGSLLGASASAISLGSAGI 389 Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-- 292 S V G + +L+AL++ T L+ P+L + Q A G + Sbjct: 390 GLLVTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVP 449 Query: 293 ---HLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGV 343 Y T + T A T+ G+ L TP + G + L I EVS +G Sbjct: 450 VLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGS 509 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A P++ R+ T V + +G T+VL GL++D + +PLL IP+LG LFR++ Sbjct: 510 AASG-PTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTT 568 Query: 404 NREETEIFIAATPFLV-KPVAMRDLS 428 R +T + + TP ++ P R L+ Sbjct: 569 ERTKTNLMVFITPRIIRDPEDARALT 594

RPSBLAST alignment for GI: 254780727 and conserved domain: TIGR02517