RPS-BLAST 2.2.22 [Sep-27-2009] Database: CddB 21,608 sequences; 5,994,473 total letters Searching..................................................done Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (474 letters) >gnl|CDD|162900 TIGR02517, type_II_gspD, general secretion pathway protein D. In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion, also called the main terminal branch of the general secretion pathway. Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See PubMed:12654803). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (TIGR02515) and to the type III secretion system pore YscC/HrcC (TIGR02516). Length = 594 Score = 115 bits (291), Expect = 2e-26 Identities = 73/266 (27%), Positives = 112/266 (42%), Gaps = 32/266 (12%) Query: 194 DQVTLKVTIAEVRRDILKQIGFQHSITG-------------SSSGPSKSFAADFGGKFV- 239 QV ++ I EV D ++G Q I G S S S +A G Sbjct: 330 AQVLVEAIIVEVSLDDALELGVQWLIAGTGGGVNFSTGSPNSGSLLGASASAISLGSAGI 389 Query: 240 -----SEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQ-- 292 S V G + +L+AL++ T L+ P+L + Q A G + Sbjct: 390 GLLVTSSSTTSGVGGTGGGPNLGVLLNALKQDTGFNVLSTPSLLTLDNQEAEINVGQEVP 449 Query: 293 ---HLYKTVSSSTGATSVTTHDY---GVVLHFTPTVLSPGRIGLRIQTEVSEP---VIGV 343 Y T + T A T+ G+ L TP + G + L I EVS +G Sbjct: 450 VLTGSYNTGTGGTNANPFNTYQRKDVGIKLKVTPQINEGGTVRLEIYQEVSSVAPTTVGS 509 Query: 344 NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRF 403 A P++ R+ T V + +G T+VL GL++D + +PLL IP+LG LFR++ Sbjct: 510 AASG-PTFNKREIKTVVLVDNGDTVVLGGLIQDKTSESVTKVPLLGDIPVLGWLFRSTTT 568 Query: 404 NREETEIFIAATPFLV-KPVAMRDLS 428 R +T + + TP ++ P R L+ Sbjct: 569 ERTKTNLMVFITPRIIRDPEDARALT 594 >gnl|CDD|162901 TIGR02519, pilus_MshL, pilus (MSHA type) biogenesis protein MshL. Members of this family are predicted secretins, that is, outer membrane pore proteins associated with delivery of proteins from periplasm to the outside of the cell. Related families include GspD of type II secretion (TIGR02517), the YscC/HrcC family from type III secretion (TIGR02516), and the PilQ secretin of type IV pilus formation (TIGR02515). Members of this family are found in gene clusters associated with MSHA (mannose-sensitive hemagglutinin) and related pili, and appear to be the secretin of this pilus system. Length = 290 Score = 92.4 bits (230), Expect = 2e-19 Identities = 61/232 (26%), Positives = 98/232 (42%), Gaps = 32/232 (13%) Query: 210 LKQIGFQHSITGSSSGPSK--SFAADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERAT 267 K +G +S S + S F + G GV F F+++++ L Sbjct: 69 YKALGAANSNDSSGNQFSSGLGFLDNIG---------LPT-GVNSGFGFDSIINFLATFG 118 Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST----GATSVTTHDY-------GVVL 316 + L+ P + A++ Q A + G Y T SST G TS + D G+VL Sbjct: 119 DTKVLSNPKVMALNNQPAVISVGDNIRYVTEESSTGTTGGTTSTASSDTRVDSVFSGIVL 178 Query: 317 HFTPTVLSPGRIGLRIQTEVSE---------PVIGVNAGDMPSYRVRKADTTVELPSGGT 367 TP + G++ L + +SE PV +P V++ + + + G T Sbjct: 179 GVTPQISDDGKVILNVHPSISEVKPQSIDLNPVGNGAEVALPEISVKEMSSVLRVKDGDT 238 Query: 368 IVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 +VL GL+ K G+P L IP LG LF ++++TE+ I P +V Sbjct: 239 VVLGGLIDKKKSNTKTGLPFLGDIPGLGYLFGYKSKSKKKTELVIIIRPSVV 290 >gnl|CDD|106878 PHA00019, IV, phage assembly protein. Length = 428 Score = 91.8 bits (228), Expect = 3e-19 Identities = 53/196 (27%), Positives = 92/196 (46%), Gaps = 11/196 (5%) Query: 232 ADFGGKFVSEGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSG- 290 A S GG F G+ + + ALE ++ R L+ P + +SGQS + G Sbjct: 235 ARLTTVLSSAGGSF---GIFNGNVLGLSVKALENSSNSRVLSRPRILTLSGQSGYISVGQ 291 Query: 291 ------GQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVIGVN 344 G+ + + + ++ D GV L TP V+ G++ L I T+ Sbjct: 292 NVPFVTGRVTGEAANVNNPFQTIERKDVGVSLEVTPVVMGDGQLVLDIDTKADSLSDSTI 351 Query: 345 AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFN 404 A D+ + + R TTV++ G T++L GL+ + +P LSKIP++G LFR+ + Sbjct: 352 ASDIITNQ-RSLQTTVQVKDGQTLLLGGLISSNNTDGDSSVPFLSKIPLIGWLFRSKSDS 410 Query: 405 REETEIFIAATPFLVK 420 E+ +++ T ++K Sbjct: 411 NEQRTLYVLLTARVIK 426 >gnl|CDD|182549 PRK10560, hofQ, outer membrane porin HofQ; Provisional. Length = 386 Score = 87.2 bits (216), Expect = 8e-18 Identities = 69/237 (29%), Positives = 105/237 (44%), Gaps = 19/237 (8%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 QV L I + L+++G + + + G+ + G D SV R Sbjct: 154 QVELAAHIVTINEKSLRELGVKWT-LADAQQAGGV------GQVTTLGSDLSVATATTRV 206 Query: 255 SF----------ETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 F + L ALE+ + +A P L A Q AS G + Y+ S +GA Sbjct: 207 GFNIGRINGRLLDLELSALEQKQQLDIIASPRLLASHLQPASIKQGSEIPYQVSSGESGA 266 Query: 305 TSVTTHDYGVVLHFTPTVLSPGRI--GLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVEL 362 TSV + + + TPTVL GRI L I V V+ G++ + ++ +T VE+ Sbjct: 267 TSVEFKEAVLGMEVTPTVLQKGRIRLKLHISQNVPGQVLQQADGEVLAIDKQEIETQVEV 326 Query: 363 PSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLV 419 SG T+ L G+ + ++ +PLL IP LG LFR+ E E+ + TP LV Sbjct: 327 KSGETLALGGIFSRKNKSGQDSVPLLGDIPWLGQLFRHDGKEDERRELVVFITPRLV 383 >gnl|CDD|162898 TIGR02515, IV_pilus_PilQ, type IV pilus secretin (or competence protein) PilQ. A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with competence for transformation with exogenous DNA rather than with formation of a type IV pilus; the surface structure required for competence may be considered an unusual, incomplete type IV pilus structure. Length = 418 Score = 77.7 bits (192), Expect = 6e-15 Identities = 48/164 (29%), Positives = 84/164 (51%), Gaps = 6/164 (3%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE ++ P + + + A G + Y +SS+GATSV + + L T Sbjct: 258 LSALESEGRGEIISSPRVVTANNKKAKIKQGTEIPY-QQTSSSGATSVEFKEAVLSLEVT 316 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNA---GDMPSYRVRKADTTVELPSGGTIVLAGLLKD 376 P + GRI + + VS+ GV A G +P+ ++ +T V + +G T+V+ G+ + Sbjct: 317 PQITPDGRIIMDLL--VSKDSPGVVAQAGGGVPAIDKQEINTQVLVKNGETVVIGGIYEQ 374 Query: 377 DIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVK 420 ++ +P L IP+LG LF+ + + E++E+ I TP +V Sbjct: 375 TQTNSEDKVPFLGDIPVLGNLFKKTGKSDEKSELLIFITPRIVN 418 >gnl|CDD|184149 PRK13568, hofQ, putative outer membrane porin HofQ; Provisional. Length = 381 Score = 73.2 bits (180), Expect = 1e-13 Identities = 55/168 (32%), Positives = 84/168 (50%), Gaps = 12/168 (7%) Query: 260 LHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFT 319 L ALE+ + +A P L Q+AS G + Y S +G+TS+ + + + T Sbjct: 217 LSALEQENQVDIIASPRLFTSHQQTASIKQGTEIPYTVSSGKSGSTSIEFKEAVLGMEVT 276 Query: 320 PTVLSPGRIGLRIQTEVSEPVIGVNAGDMPSYRVRKA--DTTVELPSGGTIVLAGLLKDD 377 P +L GRI L+++ + P + G+ + K T V + G TIVL G+ + Sbjct: 277 PKILRNGRITLKLKISQNMPGRTIKRGEGEMLAIDKQEIQTQVTVKDGETIVLGGIFQ-- 334 Query: 378 IQQLKEG---IPLLSKIPILGALFRNS--RFNREETEIFIAATPFLVK 420 QQ ++ +PLL IP+LGALFR + +R E IFI TP L+ Sbjct: 335 -QQKRQSVNKVPLLGDIPLLGALFRQDTQQQSRRELVIFI--TPKLIS 379 >gnl|CDD|162899 TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. Length = 462 Score = 67.8 bits (166), Expect = 5e-12 Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 15/235 (6%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254 + + I ++ L Q+G T + F G S D Sbjct: 235 LIEISAWIIDIDASDLSQLGVDWQATLGAGDRQTGFNV---SAGAGLGATGSSIVTSDGD 291 Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312 F ++ALE+ + ++ P++ + A + + Y VS A SVT Sbjct: 292 YFMARVNALEQTGKAKIVSRPSVLTLENVQAVLDNN-RTFYVKVSGERVADLESVT---A 347 Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD-MPSYRVRKADTTVELPSGG 366 G L TP V+ +I+ V + G + D +P + + +T + G Sbjct: 348 GTSLRVTPRVIGDEGAQRQIKLNVDIEDGQQKTDGTSTVDALPEIKRTEINTQARVGHGQ 407 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 ++++ G +D+ +GIPLL IP+LG LFR++ + TP +V+ Sbjct: 408 SLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462 >gnl|CDD|185244 PRK15346, PRK15346, outer membrane secretin SsaC; Provisional. Length = 499 Score = 48.9 bits (117), Expect = 3e-06 Identities = 56/230 (24%), Positives = 101/230 (43%), Gaps = 48/230 (20%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGG-------KFVSEGGDFSV 247 + + V+I +V + Q+G S + S G SF + F +S G+F V Sbjct: 272 MIEISVSIIDVDAGDINQLGIDWSASASLGGGKISFNSGFADGNASGFSTVISNTGNFMV 331 Query: 248 KGVLDRFSFETVLHALERATAIRTLAEP---TLT---AISGQSASFTSGGQHLYKTVSSS 301 + L+ALE+ + + L++P TL A+ ++ +F Y + Sbjct: 332 R-----------LNALEKNSKAKILSQPSVVTLNNIQAVLDKNVTF-------YTKLQGE 373 Query: 302 TGAT--SVTTHDYGVVLHFTPTVLSPG-----RIGLRIQT-EVSEPVIGVNAGDMPSYRV 353 A S+TT G +L TP ++ + L IQ + S + D P V Sbjct: 374 KVAKLESITT---GSLLRVTPRLIDDNGTQKVMLNLNIQDGQQSATQ---SETD-PLPEV 426 Query: 354 RKADTTVE--LPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNS 401 + ++ + L +G +++L G ++D + + IPLL IP++G LFR++ Sbjct: 427 QNSEIATQATLKAGQSLLLGGFIQDKQIESQNKIPLLGDIPLIGGLFRST 476 >gnl|CDD|162902 TIGR02520, pilus_B_mal_scr, type IVB pilus formation outer membrane protein, R64 PilN family. Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. This protein family appears to encode a secretin for pilus formation, although it is quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Scoring between the trusted and noise cutoffs are examples of bundle-forming pilus B (bfpB). Length = 497 Score = 40.3 bits (94), Expect = 0.001 Identities = 47/196 (23%), Positives = 70/196 (35%), Gaps = 18/196 (9%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD-R 253 QV L V + V+ Q G S+ S A+ G + G + V+D Sbjct: 260 QVLLNVKVLSVQFKGSDQTGVDWSLVYKSLSRFGLSLANAGTSTAATAGSSAGINVVDGP 319 Query: 254 FSFETVL-HALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTH-- 310 F+ T L AL + + P++T ++ Q A F Q Y S+T +V + Sbjct: 320 FAGTTALIRALSTQGKVSVVTSPSVTTLNLQPAPFQIATQTGYLASQSTTVTANVGSSTD 379 Query: 311 ------DYGVVLHFTPTVLSPGRIGLRIQTEVSEPV----IGVNAG----DMPSYRVRKA 356 G + P + G I L+ S+ G P VR Sbjct: 380 LEPGTITTGFNMTLLPDIRDDGDILLQFNISHSDLAQLRKFTSKDGGTKVQTPDTDVRNF 439 Query: 357 DTTVELPSGGTIVLAG 372 V L SG T+VL+G Sbjct: 440 SQRVNLKSGQTLVLSG 455 >gnl|CDD|115787 pfam07156, Prenylcys_lyase, Prenylcysteine lyase. This family contains prenylcysteine lyases (EC:1.8.3.5) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps. Length = 368 Score = 35.6 bits (82), Expect = 0.026 Identities = 42/183 (22%), Positives = 69/183 (37%), Gaps = 23/183 (12%) Query: 134 SNIRVEMVSDTVVLHGM-VRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAG 192 S++R+ M + V+ M + Q+ A E L G + + N + + LN AG Sbjct: 21 SSLRMHMWVEDVLDKFMRIYRYQEHGYAFSNVEELLHAIGGDDFVNLTKMTLTEYLNEAG 80 Query: 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLD 252 Q L +A V R Q ++ G+ S A GG + EGG+ V L Sbjct: 81 FSQQFLNEMVAAVLRANYGQSTDINAFAGAVS-----LAGADGGLWSVEGGNKQVCSGLL 135 Query: 253 RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312 + S ++H + +I+ + G+ LY+ V S +D Sbjct: 136 QASKSNLIHG-------------KVMSIT----KYLGNGKKLYEVVYKIGKGNSSDFYDI 178 Query: 313 GVV 315 VV Sbjct: 179 VVV 181 >gnl|CDD|185239 PRK15339, PRK15339, type III secretion system outer membrane pore InvG; Provisional. Length = 559 Score = 34.4 bits (79), Expect = 0.065 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 10/125 (8%) Query: 312 YGVVLHFTPTVLSPGRIGLRIQTE-----VSEPVIGVNAGDMPSYRVRKADTTVELPSGG 366 YG ++ P + G+I + + E + + +P T +P G Sbjct: 405 YGTMISVLPRFSADGQIEMSLDIEDGNEKTPQSDTTTSVDALPEVGRTLISTIARVPQGK 464 Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRD 426 ++++ G +D + IP L +P++G+LFR S N+ FL++P + + Sbjct: 465 SLLIGGYTRDANTDEVQSIPFLGSLPLIGSLFRYSSKNKSNI-----VRVFLIEPREIVE 519 Query: 427 LSRPD 431 PD Sbjct: 520 PLTPD 524 >gnl|CDD|162256 TIGR01217, ac_ac_CoA_syn, acetoacetyl-CoA synthase. This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway. Length = 652 Score = 33.3 bits (76), Expect = 0.14 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 13/77 (16%) Query: 192 GEDQVTLKVTIAEVRRDI------LKQIGFQHSITGSSSGPSKSFA-------ADFGGKF 238 E VT AE+RR + L+ +G + S P+ A A G + Sbjct: 107 DETHEPAPVTWAELRRQVASLAAALRALGVRPGDRVSGYLPNIPQAVVAMLATASVGAIW 166 Query: 239 VSEGGDFSVKGVLDRFS 255 S DF +GVLDRF Sbjct: 167 SSCSPDFGARGVLDRFQ 183 >gnl|CDD|162411 TIGR01541, tape_meas_lam_C, phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage. Length = 332 Score = 32.5 bits (74), Expect = 0.25 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 5/67 (7%) Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADF-----GGKFVSEGGDFSVKG 249 + K+ IA + + I G S SSSG S+ A + GG + + GG + G Sbjct: 210 DIIAKLAIAGLAQSIGSLFGGAVSGGASSSGAMASYGAAYVFNFAGGGYTAGGGKYEPSG 269 Query: 250 VLDRFSF 256 V+ F Sbjct: 270 VVHPGEF 276 >gnl|CDD|162609 TIGR01929, menB, naphthoate synthase (dihydroxynaphthoic acid synthetase). This model represents an enzyme, naphthoate synthase (dihydroxynaphthoic acid synthetase), which is involved in the fifth step of the menaquinone biosynthesis pathway. Together with o-succinylbenzoate-CoA ligase (menE: TIGR01923), this enzyme takes 2-succinylbenzoate and converts it into 1,4-di-hydroxy-2-naphthoate. Included above the trusted cutoff are two enzymes from Arabadopsis thaliana and one from Staphylococcus aureus which are identified as putative enoyl-CoA hydratase/isomerases. These enzymes group with the naphthoate synthases when building a tree and when doing BLAST searches. Length = 259 Score = 29.4 bits (66), Expect = 2.3 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 8/74 (10%) Query: 235 GGKFVSEGGDFSVK---GVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGG 291 G K GGD V+ G +D S L+ L+ IRT +P + ++G + GG Sbjct: 57 GDKAFCSGGDQKVRGDYGYIDD-SGVHRLNVLDVQRQIRTCPKPVIAMVNGYAI----GG 111 Query: 292 QHLYKTVSSSTGAT 305 H+ V T A Sbjct: 112 GHVLHVVCDLTIAA 125 >gnl|CDD|164843 PHA00821, PHA00821, hypothetical protein. Length = 295 Score = 28.9 bits (64), Expect = 3.0 Identities = 18/61 (29%), Positives = 28/61 (45%) Query: 268 AIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGR 327 A RT A+P L A S G L+K + +G T++ +Y ++ T TV G Sbjct: 157 AFRTAAQPVLIKDRALYALGNSVGLQLFKAPTGISGGTAIPVQNYNDIIPQTSTVTVLGG 216 Query: 328 I 328 + Sbjct: 217 V 217 >gnl|CDD|178909 PRK00164, moaA, molybdenum cofactor biosynthesis protein A; Reviewed. Length = 331 Score = 28.2 bits (64), Expect = 4.3 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Query: 200 VTIAEVRRDILKQIGFQHSITGSSSGPSKSFA-ADFGGKF 238 ++ AE+R L + G+ S GP++ F D+GG+ Sbjct: 210 LSGAEIR-ARLAERGWTLQPRARSGGPAQYFRHPDYGGEI 248 >gnl|CDD|148853 pfam07482, DUF1522, Domain of Unknown Function (DUF1522). Length = 109 Score = 28.1 bits (63), Expect = 5.3 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 7/50 (14%) Query: 259 VLHALERATAIRTL----AEPTLTAISGQSASFTSGGQHLYKTVSSSTGA 304 VL A++ A+ ++T T+ +G +AS + G T+S+STGA Sbjct: 53 VLKAIDLASGVQTATISNGAATIATSAGTAASVIASGA---LTLSTSTGA 99 >gnl|CDD|162167 TIGR01034, metK, S-adenosylmethionine synthetase. Tandem isozymes of this S-adenosylmethionine synthetase in E. coli are designated MetK and MetX. Length = 377 Score = 28.1 bits (63), Expect = 5.4 Identities = 14/36 (38%), Positives = 19/36 (52%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 L+ I GE + V I EV R+ +K IG+ S G Sbjct: 45 GLVLIGGEITTSAYVDIQEVARNTIKDIGYTDSDYG 80 >gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase. Length = 366 Score = 27.4 bits (60), Expect = 7.4 Identities = 11/32 (34%), Positives = 17/32 (53%) Query: 411 FIAATPFLVKPVAMRDLSRPDDHYSVEDDAKA 442 F + P +V P AM+ ++ PD Y+ A A Sbjct: 66 FKISMPIMVAPTAMQKMAHPDGEYATARAASA 97 >gnl|CDD|184257 PRK13701, psiB, plasmid SOS inhibition protein B; Provisional. Length = 144 Score = 27.4 bits (61), Expect = 9.0 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%) Query: 238 FVSEGGD-FSVKGVLDRFSFETVLHAL 263 V+ GG+ F+V V DRF+ E + H+L Sbjct: 91 LVNAGGEPFAVVQVQDRFAPEAISHSL 117 >gnl|CDD|179600 PRK03584, PRK03584, acetoacetyl-CoA synthetase; Provisional. Length = 655 Score = 27.1 bits (61), Expect = 9.5 Identities = 12/24 (50%), Positives = 14/24 (58%) Query: 231 AADFGGKFVSEGGDFSVKGVLDRF 254 A G + S DF V+GVLDRF Sbjct: 159 TASLGAIWSSCSPDFGVQGVLDRF 182 >gnl|CDD|182940 PRK11064, wecC, UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional. Length = 415 Score = 27.3 bits (61), Expect = 9.7 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%) Query: 138 VEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 VE++ + V+ GM S RA EL + FL Sbjct: 168 VELIKNDRVIGGMTPVC--SARASELYKIFL 196 Database: CddB Posted date: Feb 4, 2011 9:54 PM Number of letters in database: 5,994,473 Number of sequences in database: 21,608 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0854 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 21608 Number of Hits to DB: 7,599,544 Number of extensions: 499859 Number of successful extensions: 1010 Number of sequences better than 10.0: 1 Number of HSP's gapped: 995 Number of HSP's successfully gapped: 31 Length of query: 474 Length of database: 5,994,473 Length adjustment: 97 Effective length of query: 377 Effective length of database: 3,898,497 Effective search space: 1469733369 Effective search space used: 1469733369 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 59 (26.3 bits)