RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
(474 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 53.4 bits (128), Expect = 1e-07
Identities = 71/426 (16%), Positives = 123/426 (28%), Gaps = 169/426 (39%)
Query: 148 HGMVRT-----IQDSQRAVELSETFLSQ--------SGRNQYANSSSKKVMNLLN-IAGE 193
HG + A +L E F + ++ + ++ V L ++
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFLGYVSSL 71
Query: 194 ---------DQVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEG 242
DQV L + + E L+ I H++ + +
Sbjct: 72 VEPSKVGQFDQV-LNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLV---------- 117
Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL--TAISGQS---ASFTSGGQ----- 292
K ++ + +R + L G + A F GGQ
Sbjct: 118 ---KTKELI-KNYITAR-IMAKRP--FDKKSNSALFRAVGEGNAQLVAIF--GGQGNTDD 168
Query: 293 ------HLYKT--------VSSSTG------ATSVTTHDY---GV-VLHF------TPTV 322
LY+T + S T++ G+ +L + TP
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228
Query: 323 ---LS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELP-------SGGT-- 367
LS P +S P+IGV + Y V + T P G T
Sbjct: 229 DYLLSIP----------ISCPLIGV--IQLAHYVVTAKLLGFT---PGELRSYLKGATGH 273
Query: 368 ---IVLA-------------GLLKDDIQQL-------KEGIPLLSKIPILGALFRNSRFN 404
+V A ++ I L E P S +P ++ +S N
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LP--PSILEDSLEN 330
Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA----SEV 460
E +P L ++ +L++ V+D + N+ N + P S V
Sbjct: 331 NEGV-----PSPML----SISNLTQEQ----VQD-----YVNKTNS-HLPAGKQVEISLV 371
Query: 461 EG-QNY 465
G +N
Sbjct: 372 NGAKNL 377
Score = 44.9 bits (106), Expect = 4e-05
Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 72/215 (33%)
Query: 109 MLNL-DILIERDIAHLEMTLRRFIADSNIRVEMV-SDT--VV------LHGMVRTIQD-- 156
ML++ ++ E+ ++ T A + + +V VV L+G+ T++
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397
Query: 157 ------------SQRAVELSETFLSQSG--RNQYANSSSKKVMNLL-----NIAGEDQVT 197
S+R ++ S FL + + +S + L + +D
Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD--- 454
Query: 198 LKV----T-----IAEVRRDILKQIGFQHSITGSSSGP-----SKSFAA----DFGGKFV 239
+++ T + + I ++I I P + F A DFG
Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERI--VDCII---RLPVKWETTTQFKATHILDFG---- 505
Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRT-LA 273
GG S GVL H + T +R +A
Sbjct: 506 -PGGA-SGLGVL--------THRNKDGTGVRVIVA 530
>1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI,
protein structure initiative; 2.30A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.10
c.116.1.2
Length = 268
Score = 30.2 bits (68), Expect = 1.00
Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 19/113 (16%)
Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI---------GKGKKISIG 53
YL+R F +M V LPP++ + E KG + IG
Sbjct: 69 YLRRKVFPIMRELKH-----VGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIG 123
Query: 54 LNKVIILQVPVDVQDV----LVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102
+K+ + + + V + +V + + P Y +G V L
Sbjct: 124 ADKLALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRY-WGYEVLDTRRNLA 175
>2nvp_A Hypothetical protein; alpha beta protein, structural genomics,
PSI-2, protein structure initiative; 2.20A {Clostridium
perfringens} SCOP: a.102.1.8
Length = 435
Score = 30.1 bits (68), Expect = 1.1
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%)
Query: 357 DTTVELPSGGTIVLAG-----LLKDDIQQLKEGIPLLSKIP-----ILGALFRNSRF 403
DTTVE+ G V+ G L+D Q++ +P + + P G + R +
Sbjct: 41 DTTVEVSEGDAFVITGDIPAMWLRDSTSQVEHYLPFVKEYPELKAIFTGLINRQVKC 97
>2p02_A S-adenosylmethionine synthetase isoform type-2; structural
genomics, structural genomics consortium, SGC,
transferase; HET: SAM; 1.21A {Homo sapiens} SCOP:
d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A*
1o93_A* 1o90_A* 1o9t_A 2obv_A*
Length = 396
Score = 28.8 bits (64), Expect = 2.8
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
++ +AGE V +V R+ +K IG+ S G
Sbjct: 64 GMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKG 99
>1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A
{Methanococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A*
Length = 193
Score = 28.3 bits (62), Expect = 4.0
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%)
Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI 44
+QRT +M I+ + NP+ K+ KEAN + ++ DVEI
Sbjct: 1 MQRTLGEIMKIYFATGNPN--KI---KEANIILKDLKDVEI 36
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function;
HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Length = 224
Score = 28.0 bits (62), Expect = 4.6
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 4/115 (3%)
Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRV--EMVSDTVVLHGMVRTIQD 156
++ + +L L D L + ++ E+T R A IR+ D ++ G V T +
Sbjct: 22 VIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQ 81
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211
A F+ G N + +N G + E+ +K
Sbjct: 82 VVLAKSSGADFVVTPGLNPKIVKLCQD-LNFPITPGVNNPMAIEIALEMGISAVK 135
>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like
virus, icosahedral virus; 2.40A {Cricket paralysis
virus} SCOP: b.121.4.1
Length = 57
Score = 28.1 bits (62), Expect = 4.8
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 378 IQQLKEGIPLLSKIPILGALF 398
+ Q+ EG+ LS IP+LG +F
Sbjct: 18 LGQISEGLTTLSHIPVLGNIF 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.7 bits (60), Expect = 5.4
Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 14/38 (36%)
Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADS----NIRVEM 140
KQ L L+ +L+ + DS I+ M
Sbjct: 19 KQALK----------KLQASLKLYADDSAPALAIKATM 46
>1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM
biosynthesis, lyase; 1.84A {Homo sapiens} SCOP:
c.113.1.1
Length = 286
Score = 27.5 bits (60), Expect = 6.2
Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 11/86 (12%)
Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216
S RAVE +E L Q+ + + S K+ N ++ + ++ +IG
Sbjct: 84 SPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVY---------VVGNATASLVSKIGLD 134
Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG 242
G + G ++ A + S
Sbjct: 135 --TEGETCGNAEKLAEYICSRESSAL 158
>1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS,
signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1
Length = 211
Score = 27.4 bits (60), Expect = 6.5
Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%)
Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-----GKQ 108
L K +L+VPV D T+AD++ S F + V Q+ + +G K+
Sbjct: 63 LEKTAVLRVPVPPNVAFELDRTRADLI--SEDVQRRFVQEVVQSQQVAVGRQLEDFRSKR 120
Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148
++ + E+++A LE + R A R V++ +++H
Sbjct: 121 LMGMTPW-EQELAQLEAWVGRDRASYEARERHVAERLLMH 159
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7;
2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1
PDB: 2p0m_A*
Length = 662
Score = 27.2 bits (60), Expect = 7.1
Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 22/129 (17%)
Query: 349 PSYRVRKADTTVELPSGGT--------IVLAGLLKDDIQQLK---------EGIPLLSKI 391
P YR D LP G + + ++++ + EG+ L
Sbjct: 95 PCYRWVVGDGVQSLPVGTGCTTVGDPQGLFQKHREQELEERRKLYQWGSWKEGLILNVAG 154
Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451
L L + RF ++ F A+ + + +A+++ + DD FNR+
Sbjct: 155 SKLTDLPVDERFLEDKKIDFEASLAWGLAELALKNSLNILAPWKTLDD-----FNRIFWC 209
Query: 452 YGPKEASEV 460
K A V
Sbjct: 210 GRSKLARRV 218
>2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A
{Escherichia coli} PDB: 2w8i_A 2w8h_A*
Length = 359
Score = 27.2 bits (59), Expect = 7.8
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)
Query: 322 VLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378
+ G + + E++ P + V +D T+ P G + +AG +
Sbjct: 66 RIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVN-SDGTIFYPYIGKVQVAGKTVSQV 124
Query: 379 QQL 381
+Q
Sbjct: 125 RQD 127
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate
aldolase; structural genomics, NPPSFA; 1.67A {Thermus
thermophilus HB8} PDB: 2yw4_A
Length = 207
Score = 27.2 bits (60), Expect = 8.7
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158
+L G+ +L L +L E + LE+TLR ++ S ++ G VR+ ++++
Sbjct: 18 LLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAE 77
Query: 159 RAVELSETFLSQSGRNQ 175
A+E FL G +
Sbjct: 78 AALEAGAAFLVSPGLLE 94
>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel;
1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB:
2zq0_A* 2jke_A* 2jka_A* 2jkp_A*
Length = 738
Score = 26.9 bits (59), Expect = 9.5
Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 6/83 (7%)
Query: 333 QTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386
Q +++ P V++ P+Y + + V PS + L
Sbjct: 22 QQKLTSPDNNLVMTFQVDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTDFDWVDRR 81
Query: 387 LLSKIPILGALFRNSRFNREETE 409
L+K+ L+ +T
Sbjct: 82 DLTKLDSKTNLYDGFEVKDTQTA 104
>1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM
ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1
d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A*
1rg9_A* 1xra_A 1xrb_A 1xrc_A
Length = 383
Score = 27.1 bits (60), Expect = 9.7
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221
++ + GE + V I E+ R+ +++IG+ HS G
Sbjct: 48 GMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMG 83
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.318 0.135 0.372
Gapped
Lambda K H
0.267 0.0593 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 3,805,001
Number of extensions: 176333
Number of successful extensions: 485
Number of sequences better than 10.0: 1
Number of HSP's gapped: 482
Number of HSP's successfully gapped: 20
Length of query: 474
Length of database: 5,693,230
Length adjustment: 96
Effective length of query: 378
Effective length of database: 3,365,806
Effective search space: 1272274668
Effective search space used: 1272274668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.4 bits)