RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
         (474 letters)



>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima
           [TaxId: 2336]}
          Length = 202

 Score = 27.3 bits (60), Expect = 2.9
 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLR---RFIADSNIRVEMVSDTVVLHGMVRTIQ 155
           +L  +  ++       + E  +  +E+T            +        ++  G V +++
Sbjct: 14  VLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVE 73

Query: 156 DSQRAVELSETFLSQSGRNQ 175
             ++AVE    F+     ++
Sbjct: 74  QCRKAVESGAEFIVSPHLDE 93


>d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68
           [TaxId: 33708]}
          Length = 106

 Score = 26.5 bits (58), Expect = 4.2
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 80  VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125
           ++H+PR  YL   N+ +  +     DG+  +   +LI     HL M
Sbjct: 13  IMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 58


>d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding
           domain, XBD {Cellulomonas fimi [TaxId: 1708]}
          Length = 88

 Score = 25.9 bits (57), Expect = 8.1
 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 5/52 (9%)

Query: 273 AEPTLTAISGQSASFT-SGGQ---HLYKTVSSSTGAT-SVTTHDYGVVLHFT 319
              +++  S    +   +GGQ     +    + +  T +   +  G     T
Sbjct: 20  VTYSVSGSSSWVVTLGLNGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVT 71


>g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase
           {Potato (Solanum tuberosum) [TaxId: 4113]}
          Length = 323

 Score = 25.7 bits (56), Expect = 8.7
 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 7/95 (7%)

Query: 279 AISGQSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335
           +I G + S    T      Y   S  +   +  T + G ++        P    + +  +
Sbjct: 225 SIEGAAVSTIHITPEDGFTY--ASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHAD 282

Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369
           V+  ++      D+  Y      +  E   GG+IV
Sbjct: 283 VATKLLERICSVDVKGYS-LAEWSPEEFGEGGSIV 316


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,642,114
Number of extensions: 76371
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 5
Length of query: 474
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 385
Effective length of database: 1,185,626
Effective search space: 456466010
Effective search space used: 456466010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.3 bits)