RPS-BLAST 2.2.22 [Sep-27-2009] Database: scop70_1_75 13,730 sequences; 2,407,596 total letters Searching..................................................done Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (474 letters) >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Length = 202 Score = 27.3 bits (60), Expect = 2.9 Identities = 10/80 (12%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLR---RFIADSNIRVEMVSDTVVLHGMVRTIQ 155 +L + ++ + E + +E+T + ++ G V +++ Sbjct: 14 VLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVE 73 Query: 156 DSQRAVELSETFLSQSGRNQ 175 ++AVE F+ ++ Sbjct: 74 QCRKAVESGAEFIVSPHLDE 93 >d1f5qb2 a.74.1.1 (B:147-252) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} Length = 106 Score = 26.5 bits (58), Expect = 4.2 Identities = 13/46 (28%), Positives = 22/46 (47%) Query: 80 VVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDILIERDIAHLEM 125 ++H+PR YL N+ + + DG+ + +LI HL M Sbjct: 13 IMHAPREDYLNIYNLCRPKIFCALCDGRSAMKRPVLITLACMHLTM 58 >d1hehc_ b.2.2.1 (C:) Endo-1,4-beta xylanase D, xylan binding domain, XBD {Cellulomonas fimi [TaxId: 1708]} Length = 88 Score = 25.9 bits (57), Expect = 8.1 Identities = 7/52 (13%), Positives = 17/52 (32%), Gaps = 5/52 (9%) Query: 273 AEPTLTAISGQSASFT-SGGQ---HLYKTVSSSTGAT-SVTTHDYGVVLHFT 319 +++ S + +GGQ + + + T + + G T Sbjct: 20 VTYSVSGSSSWVVTLGLNGGQSVQSSWNAALTGSSGTVTARPNGSGNSFGVT 71 >g1mhm.1 d.156.1.1 (B:,A:) S-adenosylmethionine decarboxylase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 323 Score = 25.7 bits (56), Expect = 8.7 Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 7/95 (7%) Query: 279 AISGQSAS---FTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTE 335 +I G + S T Y S + + T + G ++ P + + + Sbjct: 225 SIEGAAVSTIHITPEDGFTY--ASFESVGYNPKTMELGPLVERVLACFEPAEFSVALHAD 282 Query: 336 VSEPVIGVNAG-DMPSYRVRKADTTVELPSGGTIV 369 V+ ++ D+ Y + E GG+IV Sbjct: 283 VATKLLERICSVDVKGYS-LAEWSPEEFGEGGSIV 316 Database: scop70_1_75 Posted date: Mar 27, 2010 6:21 PM Number of letters in database: 2,407,596 Number of sequences in database: 13,730 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0591 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 13730 Number of Hits to DB: 1,642,114 Number of extensions: 76371 Number of successful extensions: 190 Number of sequences better than 10.0: 1 Number of HSP's gapped: 190 Number of HSP's successfully gapped: 5 Length of query: 474 Length of database: 2,407,596 Length adjustment: 89 Effective length of query: 385 Effective length of database: 1,185,626 Effective search space: 456466010 Effective search space used: 456466010 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 55 (25.3 bits)