HHsearch alignment for GI: 254780728 and conserved domain: COG1261
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones].
Probab=98.39 E-value=2.3e-06 Score=55.86 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 8999726368896627534131552513379200002112454000035044202278871255550014
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~ 116 (263)
T Consensus 96 ~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~------~~vvg~vskr~l~pg~~i~~~~lr~~ 159 (220)
T COG1261 96 EVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDP------DEVVGKVSKRTLLPGQPILASMLRQA 159 (220)
T ss_pred EEEEEECCCCCCCCCCHHHHEEEECCCCCCCCCCCCCH------HHHHCHHHHCCCCCCCEECHHHHCCC
T ss_conf 39999323488773686571235402545798553898------99736775402589989558881461