Query gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 263
No_of_seqs 131 out of 616
Neff 7.7
Searched_HMMs 39220
Date Sun May 29 19:41:34 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03177 pilus_cpaB Flp pilus 100.0 0 0 321.6 22.8 239 9-256 2-260 (261)
2 COG3745 CpaB Flp pilus assembl 100.0 0 0 303.5 19.1 257 1-257 1-266 (276)
3 PRK07018 flgA flagellar basal 98.8 1E-08 2.6E-13 69.6 6.8 66 45-116 110-175 (236)
4 PRK12617 flgA flagellar basal 98.8 1.6E-08 4.1E-13 68.5 7.1 67 45-117 88-154 (214)
5 PRK12786 flgA flagellar basal 98.7 9.5E-08 2.4E-12 64.0 8.0 107 42-158 188-298 (338)
6 smart00858 SAF This domain fam 98.6 1.3E-08 3.4E-13 69.0 2.7 61 47-113 2-63 (64)
7 PRK06804 flgA flagellar basal 98.6 9.2E-08 2.4E-12 64.0 6.7 67 45-117 142-208 (272)
8 pfam08666 SAF SAF domain. This 98.6 3E-08 7.8E-13 66.9 3.5 61 47-113 2-62 (63)
9 TIGR03170 flgA_cterm flagella 98.5 8.6E-08 2.2E-12 64.2 4.2 64 48-117 1-64 (122)
10 PRK12618 flgA flagellar basal 98.5 5.2E-07 1.3E-11 59.6 8.1 62 46-117 17-78 (138)
11 COG1261 FlgA Flagellar basal b 98.4 2.3E-06 5.8E-11 55.9 8.5 64 47-116 96-159 (220)
12 PRK06005 flgA flagellar basal 98.1 1.2E-05 3.2E-10 51.5 7.6 104 44-157 32-140 (161)
13 PRK08515 flgA flagellar basal 97.8 0.00021 5.3E-09 44.3 8.5 67 44-117 105-171 (229)
14 TIGR03586 PseI pseudaminic aci 96.9 0.001 2.6E-08 40.2 3.4 54 45-108 274-327 (327)
15 TIGR03569 NeuB_NnaB N-acetylne 96.4 0.0031 8E-08 37.4 3.3 55 44-108 275-329 (329)
16 COG2089 SpsE Sialic acid synth 96.1 0.0028 7.1E-08 37.7 1.6 58 46-113 289-346 (347)
17 PRK11556 multidrug efflux syst 95.0 0.036 9.3E-07 31.1 4.2 18 93-110 202-219 (415)
18 PRK07021 fliL flagellar basal 92.5 0.24 6.2E-06 26.2 4.6 30 3-32 12-41 (159)
19 PRK09859 multidrug efflux syst 90.2 0.63 1.6E-05 23.8 4.8 17 1-17 1-17 (385)
20 PRK03598 hypothetical protein; 89.6 0.62 1.6E-05 23.8 4.4 57 93-158 210-266 (331)
21 COG1627 Uncharacterized protei 88.7 0.5 1.3E-05 24.4 3.4 54 130-183 255-311 (419)
22 TIGR03248 galactar-dH20 galact 88.3 0.5 1.3E-05 24.4 3.2 65 47-115 10-80 (507)
23 PRK05696 fliL flagellar basal 84.5 1.5 3.7E-05 21.6 3.9 30 2-31 15-44 (168)
24 COG1580 FliL Flagellar basal b 84.3 2.1 5.4E-05 20.7 4.7 135 2-157 15-154 (159)
25 PRK10559 p-hydroxybenzoic acid 83.7 2.7 7E-05 20.0 10.4 57 92-157 160-216 (310)
26 PRK13528 outer membrane recept 82.7 2.6 6.7E-05 20.1 4.6 56 1-69 3-64 (727)
27 PRK12785 fliL flagellar basal 77.2 0.96 2.5E-05 22.7 0.9 15 143-157 148-162 (167)
28 pfam04415 DUF515 Protein of un 75.6 2.6 6.7E-05 20.2 2.7 33 126-158 226-258 (416)
29 pfam03100 CcmE CcmE. CcmE is t 71.1 4.5 0.00012 18.8 3.1 27 2-28 4-30 (130)
30 PRK10270 hypothetical protein; 70.8 6.6 0.00017 17.8 4.1 28 1-28 1-28 (340)
31 PRK13254 cytochrome c-type bio 69.4 7.1 0.00018 17.6 5.5 37 121-161 73-109 (149)
32 PRK13524 outer membrane recept 68.6 7.3 0.00019 17.5 3.7 61 1-70 1-65 (742)
33 PRK09379 membrane-bound transc 67.7 4.4 0.00011 18.8 2.4 16 43-58 58-73 (303)
34 TIGR01006 polys_exp_MPA1 polys 64.7 6.3 0.00016 17.9 2.8 113 2-141 22-135 (235)
35 COG4091 Predicted homoserine d 64.1 3.2 8.1E-05 19.7 1.2 22 125-146 123-144 (438)
36 PRK10833 putative assembly pro 62.6 3.3 8.4E-05 19.6 1.0 11 63-73 50-60 (617)
37 PRK07718 fliL flagellar basal 62.4 9.8 0.00025 16.8 3.5 20 139-158 119-138 (142)
38 KOG0479 consensus 62.0 7.6 0.00019 17.4 2.8 35 126-160 207-241 (818)
39 PRK08455 fliL flagellar basal 56.3 9.9 0.00025 16.8 2.5 21 9-29 24-44 (180)
40 PRK13159 cytochrome c-type bio 55.2 13 0.00033 16.0 3.7 37 120-160 73-109 (156)
41 COG1241 MCM2 Predicted ATPase 53.7 14 0.00035 15.9 6.1 38 122-159 186-223 (682)
42 TIGR03007 pepcterm_ChnLen poly 52.3 14 0.00034 16.0 2.7 54 1-66 10-67 (510)
43 COG3117 Uncharacterized protei 52.2 15 0.00037 15.8 3.7 52 1-71 1-52 (188)
44 PRK12706 flgI flagellar basal 51.6 15 0.00038 15.7 4.2 52 127-182 98-155 (328)
45 PRK12789 flgI flagellar basal 48.6 17 0.00043 15.4 4.3 51 127-181 84-140 (367)
46 pfam02119 FlgI Flagellar P-rin 48.0 17 0.00044 15.4 4.4 51 127-181 61-117 (342)
47 COG1559 Aminodeoxychorismate l 48.0 12 0.00032 16.2 2.0 11 141-151 162-172 (342)
48 TIGR01416 Rieske_proteo ubiqui 46.2 18 0.00047 15.2 4.8 56 2-62 2-57 (192)
49 PRK09578 periplasmic multidrug 45.5 19 0.00048 15.1 4.3 18 52-69 76-93 (385)
50 TIGR01653 lactococcin_972 bact 45.4 15 0.00039 15.6 2.1 26 1-26 1-30 (149)
51 PRK13150 cytochrome c-type bio 45.1 19 0.00049 15.1 3.6 37 120-160 79-115 (159)
52 PRK03147 thiol-disulfide oxido 43.2 20 0.00052 14.9 3.7 14 1-14 2-15 (176)
53 PRK11548 hypothetical protein; 42.4 11 0.00029 16.4 1.1 22 50-71 27-48 (113)
54 pfam07423 DUF1510 Protein of u 42.3 21 0.00054 14.8 3.2 23 5-27 14-36 (214)
55 PRK10476 multidrug resistance 40.9 22 0.00056 14.7 4.0 57 92-157 216-272 (348)
56 PRK05303 flgI flagellar basal 39.4 23 0.0006 14.6 4.3 51 127-181 86-142 (368)
57 PRK01294 lipase chaperone; Pro 38.0 25 0.00063 14.4 4.1 33 1-33 1-33 (339)
58 smart00350 MCM minichromosome 37.5 25 0.00064 14.4 2.5 35 124-158 96-130 (509)
59 pfam00856 SET SET domain. SET 36.9 22 0.00057 14.7 1.9 14 49-62 4-17 (114)
60 smart00317 SET SET (Su(var)3-9 36.6 24 0.0006 14.5 1.9 19 45-63 10-28 (116)
61 TIGR01584 citF citrate lyase, 35.9 23 0.00058 14.6 1.8 59 119-180 386-454 (496)
62 pfam02706 Wzz Chain length det 35.7 27 0.00068 14.2 2.2 22 2-23 13-34 (139)
63 TIGR00247 TIGR00247 conserved 35.5 27 0.00069 14.2 3.5 27 2-28 12-38 (373)
64 PRK10893 hypothetical protein; 35.3 27 0.00069 14.2 2.4 22 2-23 3-24 (190)
65 COG3944 Capsular polysaccharid 34.5 28 0.00072 14.1 3.2 49 7-67 20-68 (226)
66 TIGR00008 infA translation ini 32.4 30 0.00077 13.9 2.4 19 145-163 44-62 (69)
67 KOG1708 consensus 31.5 31 0.0008 13.8 3.6 59 122-180 49-107 (236)
68 COG5353 Uncharacterized protei 29.7 25 0.00063 14.4 1.1 27 1-27 1-29 (161)
69 PRK13474 cytochrome b6-f compl 29.0 35 0.00089 13.5 5.0 28 1-28 12-39 (178)
70 PRK11479 hypothetical protein; 28.8 35 0.00089 13.5 2.9 85 97-212 59-147 (273)
71 KOG0480 consensus 25.6 40 0.001 13.2 1.6 36 122-157 214-249 (764)
72 pfam11337 DUF3139 Protein of u 25.4 41 0.001 13.2 3.0 24 1-24 1-25 (85)
73 COG3199 Predicted inorganic po 25.3 41 0.001 13.1 3.2 80 140-228 91-171 (355)
74 pfam03658 UPF0125 Uncharacteri 25.2 41 0.001 13.1 1.6 19 142-160 58-76 (83)
75 PRK09837 copper/silver efflux 24.9 35 0.00089 13.5 1.2 19 1-19 1-19 (460)
76 PRK10139 serine endoprotease; 24.7 42 0.0011 13.1 8.0 61 95-156 92-172 (455)
77 PRK13165 cytochrome c-type bio 24.5 42 0.0011 13.1 8.2 39 120-162 79-117 (161)
78 pfam07172 GRP Glycine rich pro 24.4 42 0.0011 13.0 4.4 12 1-12 1-12 (91)
79 PRK01777 hypothetical protein; 24.0 43 0.0011 13.0 1.6 20 142-161 61-80 (95)
80 pfam12072 DUF3552 Domain of un 23.8 43 0.0011 13.0 3.4 23 6-28 3-25 (201)
81 KOG0482 consensus 22.6 46 0.0012 12.8 2.6 80 103-182 216-309 (721)
82 PRK05305 phosphatidylserine de 22.3 47 0.0012 12.8 2.4 18 93-110 104-121 (214)
83 PRK13484 putative iron-regulat 21.6 48 0.0012 12.7 3.5 19 1-19 1-19 (682)
84 pfam03748 FliL Flagellar basal 21.1 49 0.0013 12.6 4.9 12 146-157 129-140 (145)
No 1
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=100.00 E-value=0 Score=321.56 Aligned_cols=239 Identities=35% Similarity=0.565 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCC
Q ss_conf 99999999999999999834555443322233678704899972636889662753413155251337920000211245
Q gi|254780728|r 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 (263)
Q Consensus 9 l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~ 88 (263)
|+++++|++++++++..|+........ ..+..++++|+||++||++|+.|+++|++|++||.+.+|+++|.+
T Consensus 2 l~vAl~lg~~a~~l~~~~~~~~~~~~~---~~~~~~~v~VvVA~~di~~G~~l~~~~l~~~~~P~~~~p~ga~~~----- 73 (261)
T TIGR03177 2 LAIALVAGGLAALLARRWLSPQQPAAA---VAEKVPTVPVVVAARDLPAGTPITAEDLRWVSWPEASVPAGAFDD----- 73 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCEEEEEECCCCCCCCCCCHHHEEEEECCCCCCCCCCCCC-----
T ss_conf 689999999999995510556787666---546688424999856579888958899699977654489751159-----
Q ss_pred CCHHCCCCEEECCCCCCCCCCHHHCCCCCC-CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC----
Q ss_conf 400003504420227887125555001467-630021279827999971601034562178988999995068887----
Q gi|254780728|r 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---- 163 (263)
Q Consensus 89 ~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~-~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~---- 163 (263)
.+++.|++++++|.+|++|+.++|..++. ++++..|++||||++|+++...+++|||+||||||||++++.+++
T Consensus 74 -~~~~~Gr~~~~~i~~Gepi~~~~l~~~g~~~~La~~l~pG~RAvti~Vd~~~gv~Gfi~PGD~VDVl~t~~~~~~~~~~ 152 (261)
T TIGR03177 74 -IAQLVGRIVRRPLEAGEPILESKLVPPGASGGLAALLPPGMRAVAIRVDEVTGVGGFILPGDRVDVLLTRRDDESRPND 152 (261)
T ss_pred -HHHHCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf -7786684054232689831386654688875456535899578999865433556646899978999985057887766
Q ss_pred CCEEEEEECCCEEEEEECCCCC--CCCCCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC----
Q ss_conf 6221451159789996155566--6667666169998589999999999862749999955554665564442000----
Q gi|254780728|r 164 KPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW---- 237 (263)
Q Consensus 164 ~~~~~~il~~v~Vlav~~~~~~--~~~~~~~~~vtL~v~p~qa~~l~~A~~~G~l~l~Lrs~~d~~~~~~~~~~~~---- 237 (263)
+..++++|+||+|||+|+.... +++...+++|||||+|+||++|.+|++.|+|+|+|||+.|.+..........
T Consensus 153 ~~~t~tiL~~v~VLAv~q~~~~~~~~~~~~~~tVTLevtp~qa~~L~lA~~~G~L~LaLR~~~D~~~~~~~~~~~~~~~~ 232 (261)
T TIGR03177 153 RATSETVLQNIRVLAVDQTAQEGEDTKPKVVRTVTLEVTPEQAEKLALARQVGTLSLALRNAADTDEAAATEVPAATLSL 232 (261)
T ss_pred CEEHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEECHHHHCC
T ss_conf 41212022286799953644566678886624899987999999999986268599995188767732200022444226
Q ss_pred --------CC-CCCCCEEEEEECCEEEE
Q ss_conf --------13-67772369986471761
Q gi|254780728|r 238 --------DV-QEEGKEIQIIKAGVIVN 256 (263)
Q Consensus 238 --------~~-~~~~~~v~~~~~g~~~~ 256 (263)
+. .+....+++|||+....
T Consensus 233 ~~~~~~~~~~~~~~~~~V~virG~~~~~ 260 (261)
T TIGR03177 233 APALAKAVDAAAPPRAGVEVIRGGQVSE 260 (261)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 8655667777788775389988863774
No 2
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion]
Probab=100.00 E-value=0 Score=303.49 Aligned_cols=257 Identities=34% Similarity=0.492 Sum_probs=218.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHH
Q ss_conf 95367679999999999999999998345554433222336787048999726368896627534131552513379200
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a 80 (263)
||.++|+.+++++..+++++++++.+-...+....-....+..++.+|+|+++|++.|+.|+++++.|+.||.+.+|+++
T Consensus 1 M~~~rliil~~~~~~ag~ag~la~~~~~a~~v~~~a~~~~~~~~~~~VlVA~~~L~~G~~L~~d~l~~~~WP~~~vp~ga 80 (276)
T COG3745 1 MRPKRLIILIVALAAAGLAGVLAASIWLAPAVPATAEPVAPGKPTKPVLVAAVDLPVGQRLSADQLRWQPWPADSVPAGA 80 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 98312899999999999999999986147765433334678886336899931455677325142046666666788431
Q ss_pred CCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE-C
Q ss_conf 002112454000035044202278871255550014676300212798279999716010345621789889999950-6
Q gi|254780728|r 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-S 159 (263)
Q Consensus 81 ~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~-~ 159 (263)
|++...++....+.|++++.+|..|||++.+++..++..++|..|++||||++++++...+++||+.|||||||+++. +
T Consensus 81 is~~~~pda~~~l~G~iv~~pi~~GEPVl~~Kl~~~g~~~LS~~L~~GkRAvai~V~~v~gvGGFVlPgDrVDVilt~~k 160 (276)
T COG3745 81 ISRENAPDALTGLAGRIVRVPIGAGEPVLPSKLSGPGTRTLSSVLPPGKRAVAIRVDEVVGVGGFVLPGDRVDVILTVRK 160 (276)
T ss_pred CCCCCCCCHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCEECCCCEEEEEEEEEC
T ss_conf 03555541123226825862135898531765058886301443089962688997543100223258973789999742
Q ss_pred CCCCCC---EEEEEECCCEEEEEECCCCCC--CCCCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 888762---214511597899961555666--667666169998589999999999862749999955554665564442
Q gi|254780728|r 160 LSERKP---TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 (263)
Q Consensus 160 ~~~~~~---~~~~il~~v~Vlav~~~~~~~--~~~~~~~~vtL~v~p~qa~~l~~A~~~G~l~l~Lrs~~d~~~~~~~~~ 234 (263)
.+.+.. .++++|+|+|||+++|..+++ ..+...+++|||++|+|+++|.+|++.|+|+|+|||..|.+..++...
T Consensus 161 ~~~~~d~s~~ae~VL~~iRVLAvdQ~i~e~~dg~p~v~~taTLEvtp~~a~~l~lA~~~g~LsLALRs~~d~~~~~~~~~ 240 (276)
T COG3745 161 DDAGADSSKLAETVLPNIRVLAVDQTISEREDGSPVVGRTATLEVTPDQAEKLTLAQQMGTLSLALRSVADAQEPDTGAA 240 (276)
T ss_pred CCCCCCCCCHHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCHHH
T ss_conf 76655543017877348679986413202567886343257875285787899997426706864110221468860331
Q ss_pred CCCCCCC-CCCEEEEEECC--EEEEC
Q ss_conf 0001367-77236998647--17614
Q gi|254780728|r 235 DVWDVQE-EGKEIQIIKAG--VIVNK 257 (263)
Q Consensus 235 ~~~~~~~-~~~~v~~~~~g--~~~~~ 257 (263)
+...... ..+.++++++| ..++.
T Consensus 241 ~~~~~g~~~~~~vq~~~~~~~~~~~~ 266 (276)
T COG3745 241 TGLLLGDPVAATVQLIKGGKPSAVKV 266 (276)
T ss_pred EEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 10034885301223452587531000
No 3
>PRK07018 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.83 E-value=1e-08 Score=69.64 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=61.3
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 048999726368896627534131552513379200002112454000035044202278871255550014
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~ 116 (263)
+.+|||++++|++|+.|+++|+++++.....++.++++++ ++++|+.++++|.+|++|+.++|..+
T Consensus 110 ~~~vvVa~r~l~rG~~I~~~Dl~~~~~~~~~l~~~~~td~------~~viG~~~~R~i~~G~~i~~~~L~~~ 175 (236)
T PRK07018 110 TGPYVVAARPLARGEKLSASDVTLREGDLDTLPPGVFTDP------DQLVGARVKRRIAAGQPIRPNMLRQA 175 (236)
T ss_pred EEEEEEEECCCCCCCCCCHHHCEEEEEEHHHCCCCCCCCH------HHHCCHHEEECCCCCCCCCHHHCCCC
T ss_conf 9889999443589888377892899976665687531898------89605322611489995485666854
No 4
>PRK12617 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.81 E-value=1.6e-08 Score=68.53 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=61.7
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 0489997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
+.+|+|++++|++|+.|+++|+++++.....++.++|+++ ++++|+.++++|.+|++|+.++|..|.
T Consensus 88 ~~~vvVaar~L~rG~~Ita~Dl~~~~~dl~~l~~g~~td~------~~~iG~~~rr~l~aG~~l~~~~L~~p~ 154 (214)
T PRK12617 88 NQDVLVLRRGISAGETISLADISIEKRDAARIVGAVLADP------VAAVGKTARRILPAGSLLSANDLVTQR 154 (214)
T ss_pred EEEEEEECCCCCCCCCCCHHHCEEEEEEHHHCCCCCCCCH------HHHCCHHEEECCCCCCCCCHHHCCCCC
T ss_conf 8889999031398999588993899982544487634898------896174338415898965867648621
No 5
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.69 E-value=9.5e-08 Score=63.98 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=77.2
Q ss_pred CCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC---
Q ss_conf 78704899972636889662753413155251337920000211245400003504420227887125555001467---
Q gi|254780728|r 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--- 118 (263)
Q Consensus 42 ~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--- 118 (263)
..++++|.|.+|+|.+|+.|+++|+.|.+.|.+.++.+.+++. ++++|+.+++++.+|++|+.+++..|.-
T Consensus 188 a~~~v~VpVl~R~l~rGevI~~~Dv~~~r~~~~~~~~~~~~d~------~~liG~~~Rr~l~aG~pir~~dl~~p~lV~R 261 (338)
T PRK12786 188 AYETVEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASR------EDLVGMQARRALRAGQPLRGADLAKPDLVQR 261 (338)
T ss_pred EEEEEEEEEECCCCCCCCCCCHHHEEEEEEEHHHCCCCCCCCC------CCCCCEEEEEECCCCCCCCHHHCCCCCEEEC
T ss_conf 9998972567355699887246883899800544686545680------1042116865236999304673688757846
Q ss_pred C-CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 6-300212798279999716010345621789889999950
Q gi|254780728|r 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 119 ~-~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263)
+ .+......|- +.|......- +.=..||.|.|.-..
T Consensus 262 G~~Vtl~~~~~g--l~lt~~G~Al--~~G~~Gd~I~V~Nl~ 298 (338)
T PRK12786 262 GQLVTLIYQTPG--IYLTARGKAL--EDGAEGDVVRVLNLQ 298 (338)
T ss_pred CCEEEEEEECCC--EEEEEEEEEC--CCCCCCCEEEEEECC
T ss_conf 998999991697--8999998762--577899979999889
No 6
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=98.65 E-value=1.3e-08 Score=68.98 Aligned_cols=61 Identities=23% Similarity=0.333 Sum_probs=55.1
Q ss_pred EEEEECCCCCCCCEECHHHEEEEECCHHHCCC-HHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf 89997263688966275341315525133792-00002112454000035044202278871255550
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~-~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263)
+|+|++++|++|+.|+++|+.++.|+...+|. +++++. +++.|++++++|.+|++|+.++|
T Consensus 2 ~vvVa~~~l~~G~~i~~~dl~~~~~~~~~~~~~~~~~~~------~~v~G~~~~~~i~~G~~i~~~~l 63 (64)
T smart00858 2 RVVVAARDLPAGEVITAEDVRLGHVALRDLPGGGGLTPY------GQVIGKVARRDIAAGEPITASDL 63 (64)
T ss_pred CEEEEECCCCCCCEEECCCCCCCCEEECCCCCCCCCCCC------CHHHCHHHCCCCCCCCCCCHHHC
T ss_conf 479985256888696502045674451326899832320------10122011010369881676778
No 7
>PRK06804 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.64 E-value=9.2e-08 Score=64.04 Aligned_cols=67 Identities=19% Similarity=0.260 Sum_probs=61.6
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 0489997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
+.+|+||++.|+.|+.|+++|+.+++.-...+..++|+++ ++++|+.++++|.+|++|++.+|..|-
T Consensus 142 ~lpVvVA~~~L~Rg~~Ita~DL~l~~rdls~l~~gy~td~------devIG~~~kR~Lr~GQ~I~~~~L~~p~ 208 (272)
T PRK06804 142 YLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEILGLTIKRRIRQLQAVIPSQLEQPV 208 (272)
T ss_pred EEEEEEECCCCCCCCCCCHHHCEEEEEEHHHCCCCCCCCH------HHHHCHHHHCCCCCCCCCCHHHCCCCC
T ss_conf 9889997553468977357884001362412267751798------897257851167898965978868763
No 8
>pfam08666 SAF SAF domain. This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=98.60 E-value=3e-08 Score=66.88 Aligned_cols=61 Identities=30% Similarity=0.455 Sum_probs=54.9
Q ss_pred EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf 8999726368896627534131552513379200002112454000035044202278871255550
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263)
+|+||++||++|+.|+++|+++++++.+ .+.+.+... .+++.|++++++|.+|++|+.++|
T Consensus 2 ~vvva~~~i~~G~~i~~~dl~~~~~~~~-~~~g~~~~~-----~~~~~G~~~~~~i~~G~~i~~~~l 62 (63)
T pfam08666 2 NVVVAARDLPAGEVLTADDLTLVRPPLD-LPAGLAADA-----YGEVIGKVAKRDIAAGEPLTPSDL 62 (63)
T ss_pred CEEEEECCCCCCCEECHHHEEEECCCCC-CCCCCCHHH-----HHHHCCHHHCCCCCCCCCCCHHHC
T ss_conf 7799964048988928888257788888-889959779-----999708141053589795886887
No 9
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666.
Probab=98.53 E-value=8.6e-08 Score=64.21 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=58.6
Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 9997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
|+|++++|++|+.|+++|++++.++.+.++.+++++. +++.|+.+++.|.+|++|+.++|..+.
T Consensus 1 V~Va~~~i~~G~~i~~~d~~~~~~~~~~~~~~~~~~~------~~liG~~~~r~i~~G~~i~~~~l~~~~ 64 (122)
T TIGR03170 1 VVVAKRALNRGEVISPEDLKLERGDLARLPGGVLTDP------DEVVGKVAKRPLRAGQPLRANMLRPPW 64 (122)
T ss_pred CEEECCCCCCCCCCCHHHEEEEEEEHHHCCCCCCCCH------HHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf 9998954398899798994899972542787530797------794461677731899804887757661
No 10
>PRK12618 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.53 E-value=5.2e-07 Score=59.62 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=53.4
Q ss_pred EEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 489997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
.+|+||+|+|++|+.|+++|+.++.... ++++++ .++++|+.+++.+.+|++|+.++|..|.
T Consensus 17 AeVvVaaR~L~rG~iIs~~Dl~~~~~~~----~~~~td------~~~vvG~~~rR~l~~G~~l~~~~L~~p~ 78 (138)
T PRK12618 17 AETVVAARTIRALEIIGAEDLALKPGET----PGALSD------PAQAIGQEARVTLYAGRPIRAGDLGPPA 78 (138)
T ss_pred EEEEEECCCCCCCCCCCHHHEEEEEECC----CCCCCC------HHHHCCHHEEEECCCCCEECHHHCCCCC
T ss_conf 3589991321989893889918988515----565389------8894293224210799789999958873
No 11
>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=2.3e-06 Score=55.86 Aligned_cols=64 Identities=17% Similarity=0.256 Sum_probs=60.0
Q ss_pred EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 8999726368896627534131552513379200002112454000035044202278871255550014
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~ 116 (263)
++||++|+|++|+.|+++|++.+..-.+.+|+++++++ ++++|++.+++|.+|++|..+++-.+
T Consensus 96 ~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~------~~vvg~vskr~l~pg~~i~~~~lr~~ 159 (220)
T COG1261 96 EVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDP------DEVVGKVSKRTLLPGQPILASMLRQA 159 (220)
T ss_pred EEEEEECCCCCCCCCCHHHHEEEECCCCCCCCCCCCCH------HHHHCHHHHCCCCCCCEECHHHHCCC
T ss_conf 39999323488773686571235402545798553898------99736775402589989558881461
No 12
>PRK06005 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=98.13 E-value=1.2e-05 Score=51.51 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=67.5
Q ss_pred CEEEEEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC--CC
Q ss_conf 70489997263688966275341315525133-7920000211245400003504420227887125555001467--63
Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GG 120 (263)
Q Consensus 44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--~~ 120 (263)
....++|.++.|-+|+.|++++++.++++.+. ...+++++ .++++|+.+++.|.+|++|..++|..|.- .+
T Consensus 32 ~~~~~~VP~~tIypGe~I~~~~L~~~~~~~~~~~~~~~~~d------~~~vIG~~ArRtL~pGrpI~~~~L~~P~lV~RG 105 (161)
T PRK06005 32 EIAFAVVPSTTIYPGETISDSMLLEVQFVINPPAAAQYVLS------IDQVVGKVARRTLLPGRPIPVSALREPSLVTRG 105 (161)
T ss_pred CCCCCCCCCEEECCCCCCCHHHCEEEECCCCCCCCCCCCCC------HHHHCCCEEEEEECCCCEECHHHCCCCCEECCC
T ss_conf 66746577224678878086673355032486311340189------879178058985159876187885885588589
Q ss_pred --CEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf --0021279827999971601034562178988999995
Q gi|254780728|r 121 --LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 (263)
Q Consensus 121 --ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~ 157 (263)
+......| .++|...-..- ..=..||.|.|.-.
T Consensus 106 ~~V~lv~~~G--gL~Ita~G~AL--e~G~~Gd~IrV~N~ 140 (161)
T PRK06005 106 SPVKLVFEAG--GLTITAAGTPL--QSGSAGDLIRVRNV 140 (161)
T ss_pred CEEEEEEECC--CEEEEEEEEEC--CCCCCCCEEEEEEC
T ss_conf 9899999649--99999989895--67789998999988
No 13
>PRK08515 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed
Probab=97.77 E-value=0.00021 Score=44.30 Aligned_cols=67 Identities=13% Similarity=0.053 Sum_probs=60.2
Q ss_pred CEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 70489997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
.+.+|++++++|..|+.|++.|++++.++-+..+..++.. +++.|-.+++.|.+|++|+.++|..|.
T Consensus 105 a~levl~a~~~I~r~~~Ls~~d~~~~~i~f~r~~~~~l~~-------~ei~~l~aK~~I~~g~ilt~~~l~~p~ 171 (229)
T PRK08515 105 ANMEVFKSINAIKKDDNLTASDYQKERIPFEKVPKNALLE-------DAIDKLSAKSYIRPDTILTADKFKALI 171 (229)
T ss_pred EEEEEEEECCCCCCCCCCCCCCCEEEEEECCCCCCHHCCH-------HHHCCEEEEEECCCCCCCCHHHCCCCC
T ss_conf 6889999705236898527541088999814455301023-------232143898305999773488637662
No 14
>TIGR03586 PseI pseudaminic acid synthase.
Probab=96.86 E-value=0.001 Score=40.22 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=41.5
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCC
Q ss_conf 0489997263688966275341315525133792000021124540000350442022788712
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i 108 (263)
..+=++|++||.+|+.|+.+|+..++ |..-+++..+ +.+.|+.+++++.+|+||
T Consensus 274 ~rrsl~a~~~ikkG~~lt~~~i~~~R-P~~Gi~~~~~---------~~viGkk~~~di~k~~pi 327 (327)
T TIGR03586 274 FRRSLYVVKDIKKGEKFTEENVRSVR-PGFGLHPKYL---------DEILGKKANQDIKFGTPL 327 (327)
T ss_pred EEEEEEEECCCCCCCEECHHHEEEEC-CCCCCCHHHH---------HHHCCCEECCCCCCCCCC
T ss_conf 40589993731888885489867779-9899998899---------886391173557998989
No 15
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=96.40 E-value=0.0031 Score=37.35 Aligned_cols=55 Identities=16% Similarity=0.090 Sum_probs=44.5
Q ss_pred CEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCC
Q ss_conf 70489997263688966275341315525133792000021124540000350442022788712
Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 (263)
Q Consensus 44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i 108 (263)
...+-++++++|.+|+.|+.+|+...+ |..-+++..+ +.+.|+.+.+++.+|++|
T Consensus 275 ~~rrsi~a~k~i~kG~~l~~~di~~~R-P~~Gi~~~~~---------~~iiGkk~~k~i~kg~~I 329 (329)
T TIGR03569 275 VARKSLVAAKDIKKGEIFTEDNLTVKR-PGNGISPMEY---------WEVIGKKASRDYEEDELI 329 (329)
T ss_pred HCCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCHHHH---------HHHCCCCCCCCCCCCCCC
T ss_conf 441799994742898896488867879-9999898899---------986491075568995909
No 16
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=96.07 E-value=0.0028 Score=37.68 Aligned_cols=58 Identities=21% Similarity=0.375 Sum_probs=46.1
Q ss_pred EEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf 48999726368896627534131552513379200002112454000035044202278871255550
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263)
.+=+++.+||++|+.++.+++...+ |...+.+- ..+.+.|+.++.++.+|++++.+++
T Consensus 289 ~Rsl~~~kdikkGe~ls~dNl~~~R-P~~gl~~~---------~~e~llGkka~kdi~~~~~l~w~Di 346 (347)
T COG2089 289 RRSLVATKDIKKGEILSEDNLKVLR-PGNGLHPK---------EYEELLGKKATKDIKAGTPLRWDDI 346 (347)
T ss_pred HHHEEEECCCCCCCCCCCCCEEEEC-CCCCCCHH---------HHHHHHHHHHHCCCCCCCCCCHHCC
T ss_conf 6531363254667531415647757-77898876---------9999975777414347997661105
No 17
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=95.01 E-value=0.036 Score=31.09 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=10.5
Q ss_pred CCCCEEECCCCCCCCCCH
Q ss_conf 035044202278871255
Q gi|254780728|r 93 LDGVLVRVPILKGDPIRL 110 (263)
Q Consensus 93 ~~G~~~~~~i~~G~~i~~ 110 (263)
+.|.+..+.+..|++++.
T Consensus 202 ~~GvV~~r~v~~G~~V~~ 219 (415)
T PRK11556 202 ISGRVGLKQVDVGNQISS 219 (415)
T ss_pred CCCEEEEEECCCCCEECC
T ss_conf 651577688589973777
No 18
>PRK07021 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=92.50 E-value=0.24 Score=26.22 Aligned_cols=30 Identities=13% Similarity=0.001 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 367679999999999999999998345554
Q gi|254780728|r 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHV 32 (263)
Q Consensus 3 ~~~i~~l~~~~vla~~a~~~~~~~~~~~~~ 32 (263)
+|.++.+++.++++++++..+++|+.....
T Consensus 12 kkl~iii~~~~lll~~~g~g~~~~~~~~~~ 41 (159)
T PRK07021 12 KSIWLILLILITLAAAAGAGYSYWLSKQGA 41 (159)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 604058999999999999999999547766
No 19
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=90.25 E-value=0.63 Score=23.81 Aligned_cols=17 Identities=24% Similarity=0.010 Sum_probs=11.2
Q ss_pred CCHHHHHHHHHHHHHHH
Q ss_conf 95367679999999999
Q gi|254780728|r 1 MKLTRLMGIVVSGVFAL 17 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~ 17 (263)
||+|+.+++.+.+..++
T Consensus 1 m~~k~~~li~ll~~~~l 17 (385)
T PRK09859 1 MNRRRKLLIPLLFCGAM 17 (385)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 98206789999999999
No 20
>PRK03598 hypothetical protein; Provisional
Probab=89.57 E-value=0.62 Score=23.83 Aligned_cols=57 Identities=14% Similarity=0.088 Sum_probs=34.0
Q ss_pred CCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 035044202278871255550014676300212798279999716010345621789889999950
Q gi|254780728|r 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 93 ~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263)
..|.+....+..|+++.+. . .+.....++...+.+.++... -+.|++|+.|.|..-.
T Consensus 210 ~dGvV~~~~v~~Ge~V~~G------~-~l~ti~~~~~l~v~~~v~E~~--i~~v~~Gq~v~i~~da 266 (331)
T PRK03598 210 SDGTILTRAVEPGTMLSAG------S-TVFTLSLTRPVWVRAYVDERN--LGQAQPGRKVLVYTDG 266 (331)
T ss_pred CCEEEEEEECCCCCEECCC------C-CEEEEEECCCEEEEEEECHHH--HHHCCCCCEEEEEEEC
T ss_conf 9669998975889884899------8-179999179459999977899--9528899989999946
No 21
>COG1627 Uncharacterized protein conserved in archaea [Function unknown]
Probab=88.71 E-value=0.5 Score=24.38 Aligned_cols=54 Identities=22% Similarity=0.324 Sum_probs=35.7
Q ss_pred EEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC---CCEEEEEECCCEEEEEECCC
Q ss_conf 7999971601034562178988999995068887---62214511597899961555
Q gi|254780728|r 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNI 183 (263)
Q Consensus 130 ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~---~~~~~~il~~v~Vlav~~~~ 183 (263)
..+.+-.-..+..+|++.|||.|+||....+.+. .......+-.+.++++..+.
T Consensus 255 v~v~~~~~rd~~~Ggl~s~GD~vtiY~~~ngt~~~~~~g~~~~~lv~~ssiav~eS~ 311 (419)
T COG1627 255 VQVALVLPRDSVVGGLLSPGDKVTIYAKSNGTKEIVPEGRVDAVLVAASSIAVYESE 311 (419)
T ss_pred HHHHHHCCCHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEECCEEEEEEEEEEECCC
T ss_conf 113440462644057688664467763378863342222404326887778862255
No 22
>TIGR03248 galactar-dH20 galactarate dehydratase. Galactarate dehydratase converts D-galactarate to 5-dehydro-4-deoxyglucarate which is subsequently acted on by GarL, tartronate semialdehyde reductase and glycerate kinase (, GenProp0714).
Probab=88.34 E-value=0.5 Score=24.39 Aligned_cols=65 Identities=23% Similarity=0.179 Sum_probs=35.5
Q ss_pred EEEEECCC--CCCCCEECHHHEEE-EECCHHHCCCHHCCCC---CCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 89997263--68896627534131-5525133792000021---1245400003504420227887125555001
Q gi|254780728|r 47 NVLISKGD--LAVGMVVTPNILEW-VAFPEENVFDGFIDDV---HQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263)
Q Consensus 47 ~V~va~~d--i~~G~~It~~dl~~-~~~p~~~~p~~a~~~~---~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263)
+|.||.+| +++|+.+... +.. ..+|..+ .-|+.+. +.......++|+ ++.+|.+|+.+..+.+.-
T Consensus 10 NVaVAl~d~~l~~g~~~~~g-vtl~~~Ip~GH--KiAl~~I~~Ge~I~kYG~~IG~-A~~dI~~Ge~VHthNl~~ 80 (507)
T TIGR03248 10 NVAIVVNDGGLPAGSQFEDG-VTLIEHIPQGH--KVALVDLAKGTAIIRYGETIGY-ALQDIPRGSWVREELLEM 80 (507)
T ss_pred CEEEEECCCCCCCCCEECCC-EEECCCCCCCC--EEEECCCCCCCCEEECCCEEEE-ECCCCCCCCEEEEECCCC
T ss_conf 88998666778998884787-68887799989--1520555799905877961068-877568998466022567
No 23
>PRK05696 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=84.46 E-value=1.5 Score=21.64 Aligned_cols=30 Identities=27% Similarity=0.215 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 536767999999999999999999834555
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHH 31 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~~~~ 31 (263)
|+|.++.+++.++++++++..+|+++....
T Consensus 15 KkKLiiii~~~vlll~ggggg~~~~lg~~~ 44 (168)
T PRK05696 15 KKKLIIIIVVGVLLALGGGGAAWFFMGSSD 44 (168)
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHCCCC
T ss_conf 633204799999999999999999955887
No 24
>COG1580 FliL Flagellar basal body-associated protein [Cell motility and secretion]
Probab=84.35 E-value=2.1 Score=20.71 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHC
Q ss_conf 53676799999999999999999983455544332223367870489997263688966275341315525133792000
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~ 81 (263)
|+..|+.|++.+++..+++..+..|+..............+.+...++....++.-...=.+.+. ..++.-..
T Consensus 15 k~~~~I~liv~ivl~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~Nl~~~~~~~-~v~i~i~l------ 87 (159)
T COG1580 15 KKSLWILLIVLIVLLALAGAGYFFWFGSKSEDAEAESAQTPVEILAYYYLLEEFTTNLLDGPKDR-YVKIAITL------ 87 (159)
T ss_pred CCEEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEECCCCCCCE-EEEEEEEE------
T ss_conf 75112279999999999988888753035654555666788875544652255045626688747-99999988------
Q ss_pred CCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC---CC-CCCEEECCCCCEEEEEECCCCCCCCCCCCCC-CEEEEEE
Q ss_conf 02112454000035044202278871255550014---67-6300212798279999716010345621789-8899999
Q gi|254780728|r 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR---GN-GGLSSLLPKGKRAATMDISISSAVGGMIKPN-DHVDVVM 156 (263)
Q Consensus 82 ~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~---~~-~~ls~~l~~g~ravsi~v~~~~~v~g~i~pG-d~VDV~~ 156 (263)
.+.++-+...+..-+|...+.+..- .+ ..++ -++|+-- +..+-.+.+...+..| ...|||+
T Consensus 88 ----------~~~n~~~~~el~~~~p~vrd~li~lfsskt~~eL~--t~~Gke~--Lk~ei~~~in~~L~~g~~V~dV~f 153 (159)
T COG1580 88 ----------EVANKALLEELEEKKPEVRDALLMLFSSKTAAELS--TPEGKEK--LKAEIKDRINTILKEGQVVKDVLF 153 (159)
T ss_pred ----------EECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHC--CCHHHHH--HHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf ----------60888899999975689999999999717898836--8221899--999999999899845872677855
Q ss_pred E
Q ss_conf 5
Q gi|254780728|r 157 V 157 (263)
Q Consensus 157 ~ 157 (263)
|
T Consensus 154 T 154 (159)
T COG1580 154 T 154 (159)
T ss_pred E
T ss_conf 5
No 25
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=83.71 E-value=2.7 Score=20.04 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=36.3
Q ss_pred HCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003504420227887125555001467630021279827999971601034562178988999995
Q gi|254780728|r 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 (263)
Q Consensus 92 ~~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~ 157 (263)
-..|.+.+..+..|+++.+.. .+...++.+...+.-...+ .--.+|+||+.|+|...
T Consensus 160 P~dG~V~~~~v~~Gq~V~~Gq-------~l~slV~~~~~wV~ANfkE--TqL~~ir~Gq~v~I~~~ 216 (310)
T PRK10559 160 PADGWVTNLNVYTGEFITRGS-------TAVALVKKNSFYVLAYMEE--TKLEGVRPGYRAEITPL 216 (310)
T ss_pred CCCCEEEEEECCCCCEECCCC-------EEEEEEECCCEEEEEEECH--HHCCCCCCCCEEEEEEE
T ss_conf 988678445548898856998-------5899996896699997052--21253899997999991
No 26
>PRK13528 outer membrane receptor FepA; Provisional
Probab=82.74 E-value=2.6 Score=20.14 Aligned_cols=56 Identities=9% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC------CCCCCCCEECHHHEEEE
Q ss_conf 9536767999999999999999999834555443322233678704899972------63688966275341315
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISK------GDLAVGMVVTPNILEWV 69 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~------~di~~G~~It~~dl~~~ 69 (263)
|++++++.|+..++++++..+.+..-.... ..-.|+|++ ++.++=++|+.++++.+
T Consensus 3 ~~~~~~~~~~~~~~~~l~~~~~a~~~~~~~-------------~~e~vVvt~~~~~~~~~~~~VsVIt~e~I~~~ 64 (727)
T PRK13528 3 MRANKILWLLTVVLAGLNSQLSAAESSDDD-------------NGETVVVEGTAEQVLKQQPGVSIITAEDIQKR 64 (727)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCC-------------CCCEEEECCCCCCCCCCCCCEEEECHHHHHHH
T ss_conf 304669999999999875055565334677-------------88689987875445457996499789999741
No 27
>PRK12785 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=77.17 E-value=0.96 Score=22.71 Aligned_cols=15 Identities=13% Similarity=0.171 Sum_probs=8.8
Q ss_pred CCCCCCCCEEEEEEE
Q ss_conf 562178988999995
Q gi|254780728|r 143 GGMIKPNDHVDVVMV 157 (263)
Q Consensus 143 ~g~i~pGd~VDV~~~ 157 (263)
-..+.||-.-|||++
T Consensus 148 n~~l~~~~V~~VlFt 162 (167)
T PRK12785 148 NVALAPAQVNAVLFK 162 (167)
T ss_pred HHHCCCCCEEEEEEE
T ss_conf 854178823599898
No 28
>pfam04415 DUF515 Protein of unknown function (DUF515). Family of hypothetical Archaeal proteins.
Probab=75.58 E-value=2.6 Score=20.17 Aligned_cols=33 Identities=21% Similarity=0.370 Sum_probs=25.9
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 798279999716010345621789889999950
Q gi|254780728|r 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 126 ~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263)
++.+.-+.+-+......|||+.|||.|+||.-.
T Consensus 226 ~v~~v~~~lvl~r~~~~G~~~~~Gd~I~IY~kn 258 (416)
T pfam04415 226 PVETVNKALVLTRLQQCGGLPSPGDMVKVYLKQ 258 (416)
T ss_pred CHHHEEEEEEEECHHHCCCCCCCCCEEEEEECC
T ss_conf 345513011563074447878988889999358
No 29
>pfam03100 CcmE CcmE. CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.
Probab=71.09 E-value=4.5 Score=18.76 Aligned_cols=27 Identities=11% Similarity=0.074 Sum_probs=17.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 536767999999999999999999834
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVS 28 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~ 28 (263)
|++|++.+++++++.++++++++..++
T Consensus 4 r~kRl~~i~~~~~~~~~~~~Lil~al~ 30 (130)
T pfam03100 4 RKRRLLLVLAALAALGLAVALVLYALR 30 (130)
T ss_pred CEEEHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 324547899999999999999999876
No 30
>PRK10270 hypothetical protein; Provisional
Probab=70.85 E-value=6.6 Score=17.78 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=17.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9536767999999999999999999834
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS 28 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~ 28 (263)
||+..++++++.+++++++++.++.+.+
T Consensus 1 Mkk~~~~~~~l~~~l~i~~g~~~~~~~~ 28 (340)
T PRK10270 1 MKKVLLIILLLLVVLGIAAGVGVWKVRH 28 (340)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 9028999999999999999999987410
No 31
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=69.41 E-value=7.1 Score=17.60 Aligned_cols=37 Identities=14% Similarity=0.264 Sum_probs=21.8
Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCC
Q ss_conf 00212798279999716010345621789889999950688
Q gi|254780728|r 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 (263)
Q Consensus 121 ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~ 161 (263)
+.-.+.++.. +++|.....+.++.+-|.=| ++.+..+
T Consensus 73 ~~F~itD~~~--~i~V~Y~G~lPdLF~EgqgV--VveG~~~ 109 (149)
T PRK13254 73 VRFVVTDGNA--TVPVVYTGILPDLFREGQGV--VAEGRLQ 109 (149)
T ss_pred EEEEEECCCC--EEEEEECCCCCCCCCCCCEE--EEEEEEC
T ss_conf 9999977982--89999888796001399849--9999988
No 32
>PRK13524 outer membrane receptor FepA; Provisional
Probab=68.57 E-value=7.3 Score=17.53 Aligned_cols=61 Identities=8% Similarity=-0.014 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEC----CCCCCCCEECHHHEEEEE
Q ss_conf 9536767999999999999999999834555443322233678704899972----636889662753413155
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISK----GDLAVGMVVTPNILEWVA 70 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~----~di~~G~~It~~dl~~~~ 70 (263)
|+++....|++++.+++.+.-.+. ..+....++...-+|+|.+ +.-|+=..|++++++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~ivvta~~~~~~a~~vsvIt~e~i~~~~ 65 (742)
T PRK13524 1 MNKKISHSLALLVNLGIYGAAQAA---------EAEDQAAAPSHDDTIVVTAAEQNLQAPGVSTITAEDIRKNP 65 (742)
T ss_pred CCCHHHHHHHHHHHHHHCCCHHHC---------CCCCCCCCCCCCCEEEEEEEECCCCCCCCEEECHHHHHHHC
T ss_conf 984346689999998754420103---------33223567776647999565435669971785999997442
No 33
>PRK09379 membrane-bound transcriptional regulator LytR; Provisional
Probab=67.69 E-value=4.4 Score=18.85 Aligned_cols=16 Identities=19% Similarity=0.100 Sum_probs=8.9
Q ss_pred CCEEEEEEECCCCCCC
Q ss_conf 8704899972636889
Q gi|254780728|r 43 AKFINVLISKGDLAVG 58 (263)
Q Consensus 43 ~~~v~V~va~~di~~G 58 (263)
.+.+.+++.-.|=..+
T Consensus 58 ~~p~niLllG~D~r~~ 73 (303)
T PRK09379 58 SEPISILLMGVDERGE 73 (303)
T ss_pred CCCEEEEEEEECCCCC
T ss_conf 9976999998459999
No 34
>TIGR01006 polys_exp_MPA1 polysaccharide export protein, MPA1 family; InterPro: IPR005701 The MPA1 proteins function in capsule polysaccharide and exopolysaccharide polymerization and/or export. They possess a characteristic carboxy-terminal ATP-binding domain and one or more regions which can form coiled-coils and are located in the periplasmic domain between the two transmembrane regions of the protein .; GO: 0015542 sugar efflux transmembrane transporter activity, 0006859 extracellular carbohydrate transport, 0016021 integral to membrane.
Probab=64.66 E-value=6.3 Score=17.91 Aligned_cols=113 Identities=10% Similarity=0.112 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEE-CCHHHCCCHH
Q ss_conf 536767999999999999999999834555443322233678704899972636889662753413155-2513379200
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA-FPEENVFDGF 80 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~-~p~~~~p~~a 80 (263)
+++..+.|+++++++.++++..++...+.-+ .+++++|-.+.=.-...+++.|+.--- +-.++ ...
T Consensus 22 ~k~~~lil~~al~~~~~s~~~tfF~~~P~Yt-----------a~T~i~V~~~~~dn~~~~~aQelqan~~Lvn~Y--~eI 88 (235)
T TIGR01006 22 WKRKLLILIVALLFLIISFIYTFFIISPKYT-----------ASTRIYVVNRNGDNKSQLTAQELQANIQLVNDY--KEI 88 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHEEEEEEE-----------EEEEEEEEECCCCCCCCCEECHHHCCHHHHHHH--HHH
T ss_conf 9876899999999999987765401204773-----------224899852488882113100121032442115--442
Q ss_pred CCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCC
Q ss_conf 0021124540000350442022788712555500146763002127982799997160103
Q gi|254780728|r 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 (263)
Q Consensus 81 ~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~ 141 (263)
+..++ -++ ++ ..++ ..-++.+.|.. .+...++.+-|.++|.|....+
T Consensus 89 i~S~~---iL~----~V-~~~L--~l~ls~~~l~~----~~~v~~~~~t~~i~i~V~~~~~ 135 (235)
T TIGR01006 89 ILSPD---ILD----KV-SKDL--KLDLSEKELSS----MVTVTNQTDTRVISISVKSKTP 135 (235)
T ss_pred CCCHH---HHH----HH-HHHC--CCCCCHHHHHC----CEEEECCCCCEEEEEEEECCCC
T ss_conf 03646---888----87-5320--45789767525----0366426673799998616886
No 35
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=64.14 E-value=3.2 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.490 Sum_probs=10.1
Q ss_pred CCCCCEEEEEECCCCCCCCCCC
Q ss_conf 2798279999716010345621
Q gi|254780728|r 125 LPKGKRAATMDISISSAVGGMI 146 (263)
Q Consensus 125 l~~g~ravsi~v~~~~~v~g~i 146 (263)
+.-++..+.+.++..-.++..+
T Consensus 123 i~h~KHlVMmNVEaDvtIGp~L 144 (438)
T COG4091 123 ILHGKHLVMMNVEADVTIGPIL 144 (438)
T ss_pred HHCCCEEEEEEEEECEEECHHH
T ss_conf 8567728999754032534889
No 36
>PRK10833 putative assembly protein; Provisional
Probab=62.60 E-value=3.3 Score=19.59 Aligned_cols=11 Identities=27% Similarity=0.773 Sum_probs=6.5
Q ss_pred HHHEEEEECCH
Q ss_conf 53413155251
Q gi|254780728|r 63 PNILEWVAFPE 73 (263)
Q Consensus 63 ~~dl~~~~~p~ 73 (263)
.+|++|.-||.
T Consensus 50 ~GDi~ws~fP~ 60 (617)
T PRK10833 50 DGDLRWHVWPQ 60 (617)
T ss_pred CCCCEEEECCC
T ss_conf 77746998552
No 37
>PRK07718 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=62.41 E-value=9.8 Score=16.78 Aligned_cols=20 Identities=5% Similarity=0.209 Sum_probs=13.3
Q ss_pred CCCCCCCCCCCCEEEEEEEE
Q ss_conf 10345621789889999950
Q gi|254780728|r 139 SSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 139 ~~~v~g~i~pGd~VDV~~~~ 158 (263)
...+-..+.+|...+||++.
T Consensus 119 ~~~iN~~l~~G~V~~VyfT~ 138 (142)
T PRK07718 119 KEKINNLMQEGKVKKVYITS 138 (142)
T ss_pred HHHHHHHCCCCCEEEEEEEE
T ss_conf 99998646789469999887
No 38
>KOG0479 consensus
Probab=62.02 E-value=7.6 Score=17.42 Aligned_cols=35 Identities=23% Similarity=0.472 Sum_probs=24.4
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 79827999971601034562178988999995068
Q gi|254780728|r 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 (263)
Q Consensus 126 ~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~ 160 (263)
|+|.-+-++.+=...-+-+..+|||||.|+-.++.
T Consensus 207 PaGQLPRSVDvilddDLVD~~KPGDRV~ivG~yr~ 241 (818)
T KOG0479 207 PAGQLPRSVDVILDDDLVDRVKPGDRVNIVGIYRS 241 (818)
T ss_pred CCCCCCCCEEEEECCCCCCCCCCCCEEEEEEEEEE
T ss_conf 98789853227734540014788873689998852
No 39
>PRK08455 fliL flagellar basal body-associated protein FliL; Reviewed
Probab=56.31 E-value=9.9 Score=16.77 Aligned_cols=21 Identities=33% Similarity=0.507 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999998345
Q gi|254780728|r 9 IVVSGVFALVAGIIAMRLVSP 29 (263)
Q Consensus 9 l~~~~vla~~a~~~~~~~~~~ 29 (263)
+.+.++++++.|+.++.++..
T Consensus 24 i~vvvlll~~gG~~~~~l~~~ 44 (180)
T PRK08455 24 IGVVVLLLLIGGVIAFLLMGS 44 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999876178
No 40
>PRK13159 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=55.17 E-value=13 Score=16.04 Aligned_cols=37 Identities=8% Similarity=0.164 Sum_probs=22.1
Q ss_pred CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 30021279827999971601034562178988999995068
Q gi|254780728|r 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 (263)
Q Consensus 120 ~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~ 160 (263)
.++-.+.++.- +++|.....+.++.+-|.=| ++.+..
T Consensus 73 ~v~F~iTD~~~--~i~V~Y~GiLPDLFrEGqGV--VaeG~~ 109 (156)
T PRK13159 73 KVSFTVIDKNA--ATQVEYTGILPDLFRDNQSV--IANGRM 109 (156)
T ss_pred EEEEEEECCCC--EEEEEECCCCCHHHHCCCEE--EEEEEE
T ss_conf 89999954895--79999868794465368808--999998
No 41
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=53.68 E-value=14 Score=15.90 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=30.7
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 02127982799997160103456217898899999506
Q gi|254780728|r 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 (263)
Q Consensus 122 s~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~ 159 (263)
...+++|..+-++.+-......+.++|||+|.|.....
T Consensus 186 pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~ 223 (682)
T COG1241 186 PELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVR 223 (682)
T ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf 56589999995699998347656667888899999994
No 42
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily; InterPro: IPR014345 Members of this entry belong to the family of polysaccharide chain length determinant proteins. They are found in species that encode the PEP-CTERM/exosortase system and are predicted to act in protein sorting in a number of Gram-negative bacteria, they are also found near the epsH homologue that is the putative exosortase gene..
Probab=52.29 E-value=14 Score=15.96 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=37.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE----CCCCCCCCEECHHHE
Q ss_conf 953676799999999999999999983455544332223367870489997----263688966275341
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS----KGDLAVGMVVTPNIL 66 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va----~~di~~G~~It~~dl 66 (263)
|.++||+.++++.+.++++.++++.+=..+++. -+|+|= -+||=.|=.|+++.=
T Consensus 10 iw~~rw~~~~~Aw~V~~~gw~~v~~lP~~Y~a~------------a~VYVdTqsvlrpLl~G~a~~P~~~ 67 (510)
T TIGR03007 10 IWRRRWLFVAVAWVVMIVGWVVVYVLPDRYEAS------------ARVYVDTQSVLRPLLKGLAVTPNVD 67 (510)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHEECCCCCEEE------------EEEEEECCCHHHHHCCCCCCCCCHH
T ss_conf 999999999999999998767121406740143------------6888843201656416673438678
No 43
>COG3117 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=52.23 E-value=15 Score=15.76 Aligned_cols=52 Identities=12% Similarity=-0.004 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEEC
Q ss_conf 95367679999999999999999998345554433222336787048999726368896627534131552
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~ 71 (263)
|+..|+..++++++++++.+++....... .. =++...|.|+ .+.+++.....
T Consensus 1 ~~~~Rw~~~ILll~a~~~~~w~~~~~~~~----~~------------~v~~~~d~p~---Y~~e~~~~~~~ 52 (188)
T COG3117 1 SMSRRWVYLILLLAALALSGWLLGLEQDE----IE------------QVRPNPDEPA---YTMEGLDTTVY 52 (188)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCC----CC------------CCCCCCCCCC---EEECCCCEEEE
T ss_conf 93452999999999999999876201355----24------------4104999864---02057423677
No 44
>PRK12706 flgI flagellar basal body P-ring protein; Provisional
Probab=51.58 E-value=15 Score=15.70 Aligned_cols=52 Identities=10% Similarity=0.172 Sum_probs=33.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC------EEEEEECCCEEEEEECC
Q ss_conf 982799997160103456217898899999506888762------21451159789996155
Q gi|254780728|r 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDHN 182 (263)
Q Consensus 127 ~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~------~~~~il~~v~Vlav~~~ 182 (263)
.+--||.+..+ +..|-+||+++||.++.-++.++. .+.+--.|-+|+|+.|.
T Consensus 98 kNvAAVmVTA~----LPpFAk~Gq~iDVtVSSiGDAkSL~GGtLLmTPLkGaDG~VYAvAQG 155 (328)
T PRK12706 98 KNIALVNVSLQ----INGNMIKGSKHNVYIASMLDSKDLTNGILLKTELKDKEGKILATASG 155 (328)
T ss_pred CEEEEEEEECC----CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEEC
T ss_conf 33699999725----78766899706799974657556789778874236899868999855
No 45
>PRK12789 flgI flagellar basal body P-ring protein; Reviewed
Probab=48.58 E-value=17 Score=15.41 Aligned_cols=51 Identities=14% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC------EEEEEECCCEEEEEEC
Q ss_conf 982799997160103456217898899999506888762------2145115978999615
Q gi|254780728|r 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDH 181 (263)
Q Consensus 127 ~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~------~~~~il~~v~Vlav~~ 181 (263)
.+--||.+..+ +..|.+|||++||.++.-+|.++. .+.+---|-+|+|+.|
T Consensus 84 kNvAAVmVTA~----LPpfa~~G~~iDVtVSSiGDAkSL~GGtLL~TPL~g~DG~VYAvAQ 140 (367)
T PRK12789 84 RNVAAVMVTAD----LPPFIGPGSRIDVTVSSLGDATSLRGGTLLMTSLTGGDGQVYAVAQ 140 (367)
T ss_pred CEEEEEEEEEC----CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEE
T ss_conf 42689999811----7875689984789997665665678967898521379987899950
No 46
>pfam02119 FlgI Flagellar P-ring protein.
Probab=48.03 E-value=17 Score=15.36 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=30.2
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC------EEEEEECCCEEEEEEC
Q ss_conf 982799997160103456217898899999506888762------2145115978999615
Q gi|254780728|r 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDH 181 (263)
Q Consensus 127 ~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~------~~~~il~~v~Vlav~~ 181 (263)
.+--||.+..+ +..|.++|+++||.++.-++.++. .+.+.-.|-+|+|+.|
T Consensus 61 kNvAaVmVTA~----lPpfa~~G~~iDVtVSSiGdAkSL~GGtLL~TPL~gadg~vYAvAQ 117 (342)
T pfam02119 61 KNVAAVMVTAT----LPPFAKPGQRIDVTVSSIGDAKSLRGGTLLMTPLKGADGEVYAVAQ 117 (342)
T ss_pred CEEEEEEEEEE----CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCEEEEEC
T ss_conf 42699999987----2775689984889997665765678977898522489987899940
No 47
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=48.02 E-value=12 Score=16.18 Aligned_cols=11 Identities=18% Similarity=0.422 Sum_probs=6.0
Q ss_pred CCCCCCCCCCE
Q ss_conf 34562178988
Q gi|254780728|r 141 AVGGMIKPNDH 151 (263)
Q Consensus 141 ~v~g~i~pGd~ 151 (263)
...|++-|+.+
T Consensus 162 ~~EG~l~PdTY 172 (342)
T COG1559 162 RLEGYLFPDTY 172 (342)
T ss_pred CCCEEECCCEE
T ss_conf 97516537636
No 48
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit; InterPro: IPR006317 These sequences represent the Proteobacterial and mitochondrial type of the Rieske [2Fe-2S] iron-sulphur subunit as found in ubiquinol-cytochrome c reductase. Not included in this group are the Rieske iron-sulphur protein as found in the cytochrome b6-f complex of the Cyanobacteria and chloroplasts. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix. ; GO: 0008121 ubiquinol-cytochrome-c reductase activity, 0006118 electron transport.
Probab=46.16 E-value=18 Score=15.19 Aligned_cols=56 Identities=11% Similarity=0.081 Sum_probs=34.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEEC
Q ss_conf 5367679999999999999999998345554433222336787048999726368896627
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It 62 (263)
.||++|.++.+.+-|++++.+++-+..+-...+. +.+....++ |=-..|.+|+.+|
T Consensus 2 ~RRdFL~~at~~vGAVGa~~~a~Pfi~~m~PsA~---~~AaGA~~e--VDvs~~~~Gq~~t 57 (192)
T TIGR01416 2 TRRDFLYAATGAVGAVGAAAAAVPFIDSMNPSAS---ALAAGAPTE--VDVSKIQEGQQLT 57 (192)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHH---HHHCCCCEE--EECCCCCCCCEEE
T ss_conf 7157889999999999887774135530388869---985788548--8625779886788
No 49
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=45.48 E-value=19 Score=15.13 Aligned_cols=18 Identities=11% Similarity=0.075 Sum_probs=8.2
Q ss_pred CCCCCCCCEECHHHEEEE
Q ss_conf 263688966275341315
Q gi|254780728|r 52 KGDLAVGMVVTPNILEWV 69 (263)
Q Consensus 52 ~~di~~G~~It~~dl~~~ 69 (263)
...+..|+.+.++++-.+
T Consensus 76 ~v~v~~Gd~V~kGq~La~ 93 (385)
T PRK09578 76 ARTYEEGQEVKQGAVLFR 93 (385)
T ss_pred EEEECCCCEECCCCEEEE
T ss_conf 998079998738988999
No 50
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family; InterPro: IPR006540 These sequences represent bacteriocins related to lactococcin 972 . Members tend to be found in association with a seven transmembrane putative immunity protein. .
Probab=45.35 E-value=15 Score=15.63 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=17.0
Q ss_pred CCHHH---HHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 95367---679999999999-999999998
Q gi|254780728|r 1 MKLTR---LMGIVVSGVFAL-VAGIIAMRL 26 (263)
Q Consensus 1 Mk~~~---i~~l~~~~vla~-~a~~~~~~~ 26 (263)
||.|. +..++...+|+. +.|+.+..-
T Consensus 1 MkkK~ki~v~~~~~~~iL~~t~gg~~~q~e 30 (149)
T TIGR01653 1 MKKKVKIGVVSLVSLTILATTLGGLAAQAE 30 (149)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHEEHCC
T ss_conf 950478899999999987544655300100
No 51
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=45.07 E-value=19 Score=15.09 Aligned_cols=37 Identities=14% Similarity=0.217 Sum_probs=22.2
Q ss_pred CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 30021279827999971601034562178988999995068
Q gi|254780728|r 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 (263)
Q Consensus 120 ~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~ 160 (263)
.+.-.+.++.. +++|.....+.++.+-|.-| ++.+..
T Consensus 79 ~v~F~ITD~~~--~i~V~Y~GilPDLFrEgqGV--VveG~l 115 (159)
T PRK13150 79 KVNFSLYDAEG--SVTVSYEGILPDLFREGQGV--VVQGTL 115 (159)
T ss_pred EEEEEEECCCC--EEEEEECCCCCCCCCCCCEE--EEEEEE
T ss_conf 89999946884--79999837787500068808--999898
No 52
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=43.21 E-value=20 Score=14.92 Aligned_cols=14 Identities=29% Similarity=0.204 Sum_probs=8.0
Q ss_pred CCHHHHHHHHHHHH
Q ss_conf 95367679999999
Q gi|254780728|r 1 MKLTRLMGIVVSGV 14 (263)
Q Consensus 1 Mk~~~i~~l~~~~v 14 (263)
||+++++...+.++
T Consensus 2 mkk~~~~~~~~i~~ 15 (176)
T PRK03147 2 MKKNRLLFRTIILL 15 (176)
T ss_pred CCCEEEHHHHHHHH
T ss_conf 86204399999999
No 53
>PRK11548 hypothetical protein; Provisional
Probab=42.45 E-value=11 Score=16.41 Aligned_cols=22 Identities=23% Similarity=0.367 Sum_probs=17.6
Q ss_pred EECCCCCCCCEECHHHEEEEEC
Q ss_conf 9726368896627534131552
Q gi|254780728|r 50 ISKGDLAVGMVVTPNILEWVAF 71 (263)
Q Consensus 50 va~~di~~G~~It~~dl~~~~~ 71 (263)
+-+.||+-|..|+++++..-+.
T Consensus 27 vYk~dI~QGN~i~~~~v~~L~~ 48 (113)
T PRK11548 27 VYRPDINQGNYLTPNDVAKIRV 48 (113)
T ss_pred CCCCCCCCCCCCCHHHHHHHCC
T ss_conf 6576557567669999987618
No 54
>pfam07423 DUF1510 Protein of unknown function (DUF1510). This family consists of several hypothetical bacterial proteins of around 200 residues in length. The function of this family is unknown.
Probab=42.28 E-value=21 Score=14.83 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 76799999999999999999983
Q gi|254780728|r 5 RLMGIVVSGVFALVAGIIAMRLV 27 (263)
Q Consensus 5 ~i~~l~~~~vla~~a~~~~~~~~ 27 (263)
++|-+++++++.++..+.+..++
T Consensus 14 ~vLNiaI~iV~llIiiva~~lf~ 36 (214)
T pfam07423 14 RVLNIAIGIVVVLIIIVAYQLFF 36 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHEEE
T ss_conf 45579999999999997664023
No 55
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=40.89 E-value=22 Score=14.70 Aligned_cols=57 Identities=16% Similarity=0.159 Sum_probs=40.5
Q ss_pred HCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 003504420227887125555001467630021279827999971601034562178988999995
Q gi|254780728|r 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 (263)
Q Consensus 92 ~~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~ 157 (263)
-..|.+....+..|+++++.. .+...++.+...+...++... -+.|+||+.|+|.+-
T Consensus 216 P~dG~V~~~~v~~G~~V~pG~-------pl~~lv~~~~~wV~An~~Et~--l~~v~~Gq~v~I~~D 272 (348)
T PRK10476 216 PFDGRVVGLKVSVGEFAAPMQ-------PIFTLIDTDHWYAIANFRETD--LKNIRVGDCATVYSM 272 (348)
T ss_pred CCCEEEEEEECCCCCEECCCC-------EEEEEEECCCEEEEEEECHHH--HCCCCCCCEEEEEEE
T ss_conf 898499988669998778998-------489999689579999932778--252799898999997
No 56
>PRK05303 flgI flagellar basal body P-ring protein; Provisional
Probab=39.37 E-value=23 Score=14.56 Aligned_cols=51 Identities=16% Similarity=0.189 Sum_probs=31.1
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCC------EEEEEECCCEEEEEEC
Q ss_conf 982799997160103456217898899999506888762------2145115978999615
Q gi|254780728|r 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDH 181 (263)
Q Consensus 127 ~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~------~~~~il~~v~Vlav~~ 181 (263)
.+--||.+..+ +..|-+||+++||.++.-++.++. .+.+--.|-+|+|+.|
T Consensus 86 kNvAAVmVTA~----LPpFa~~G~~iDVtVSSiGDAkSL~GGtLL~TPL~gaDg~vYAvAQ 142 (368)
T PRK05303 86 KNVAAVMVTAT----LPPFAKPGQRIDVTVSSIGDAKSLRGGTLLMTPLKGADGQVYAVAQ 142 (368)
T ss_pred CEEEEEEEEEE----CCCCCCCCCEEEEEEECCCCCCCCCCCEEEECCCCCCCCCEEEEEE
T ss_conf 51689999950----5887789975889997666765678977886024589986899940
No 57
>PRK01294 lipase chaperone; Provisional
Probab=37.95 E-value=25 Score=14.43 Aligned_cols=33 Identities=18% Similarity=0.044 Sum_probs=19.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 953676799999999999999999983455544
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ 33 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~ 33 (263)
|+..+..++.+.+++++++++..+.+..+....
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 33 (339)
T PRK01294 1 AKLMRKVALYLIIGAAAVLAVWYWLGLPPSSDT 33 (339)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 928899999999999999999998065667887
No 58
>smart00350 MCM minichromosome maintenance proteins.
Probab=37.54 E-value=25 Score=14.39 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=24.0
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 12798279999716010345621789889999950
Q gi|254780728|r 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 124 ~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263)
.++.|..+-++.|....-.-+.++|||+|.|.-..
T Consensus 96 ~~~~G~~Pr~i~V~l~~dLvd~~~pGd~V~i~Gil 130 (509)
T smart00350 96 EVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIY 130 (509)
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf 68899999558999967852764899999999999
No 59
>pfam00856 SET SET domain. SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure.
Probab=36.90 E-value=22 Score=14.66 Aligned_cols=14 Identities=21% Similarity=0.482 Sum_probs=11.2
Q ss_pred EEECCCCCCCCEEC
Q ss_conf 99726368896627
Q gi|254780728|r 49 LISKGDLAVGMVVT 62 (263)
Q Consensus 49 ~va~~di~~G~~It 62 (263)
+.|++||++|+.|-
T Consensus 4 l~A~~~I~~g~~i~ 17 (114)
T pfam00856 4 LFATRDIPKGELII 17 (114)
T ss_pred EEECCEECCCCEEE
T ss_conf 97997068999999
No 60
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=36.63 E-value=24 Score=14.53 Aligned_cols=19 Identities=11% Similarity=-0.043 Sum_probs=13.1
Q ss_pred EEEEEEECCCCCCCCEECH
Q ss_conf 0489997263688966275
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTP 63 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~ 63 (263)
.-.-+.|+++|++|+.|-+
T Consensus 10 ~G~Glfa~~~i~~g~~i~~ 28 (116)
T smart00317 10 KGWGVRATEDIPKGEFIGE 28 (116)
T ss_pred CCEEEEECCCCCCCCEEEE
T ss_conf 8619988976679989989
No 61
>TIGR01584 citF citrate lyase, alpha subunit; InterPro: IPR006472 These sequences, from both Gram-positive and Gram-negative bacteria, represent the alpha subunit of the holoenzyme citrate lyase composed of alpha (2.8.3.10 from EC), beta, and acyl carrier protein subunits in a stoichiometric relationship of 6:6:6. Citrate lyase is an enzyme which converts citrate to oxaloacetate. In bacteria, this reaction is involved in citrate fermentation. The alpha subunit catalyzes the reaction Acetyl-CoA + citrate = acetate + (3S)-citryl-CoA. The protein from Lactococcus lactis subsp. lactis has been experimentally characterised . ; GO: 0008814 citrate CoA-transferase activity, 0006084 acetyl-CoA metabolic process, 0005737 cytoplasm, 0009346 citrate lyase complex.
Probab=35.94 E-value=23 Score=14.65 Aligned_cols=59 Identities=22% Similarity=0.281 Sum_probs=36.3
Q ss_pred CCCEEECCCCCEEE-EEECCCCCCCCCCCCCCCEEEEEEEECC---C----CCCC-EEEEE-ECCCEEEEEE
Q ss_conf 63002127982799-9971601034562178988999995068---8----8762-21451-1597899961
Q gi|254780728|r 119 GGLSSLLPKGKRAA-TMDISISSAVGGMIKPNDHVDVVMVRSL---S----ERKP-TVTVV-LSNIRVIAID 180 (263)
Q Consensus 119 ~~ls~~l~~g~rav-si~v~~~~~v~g~i~pGd~VDV~~~~~~---~----~~~~-~~~~i-l~~v~Vlav~ 180 (263)
+.++-.+.|=+|+- +.=|+.++.+ +.||+-|||++|-.+ + .+.. ..++- -.+++++.+.
T Consensus 386 Ak~~iI~APLvRGRIptvV~~V~Tv---iTPGe~vDvlvTd~GvavNdklpkr~dL~e~L~~~~~ip~~tIE 454 (496)
T TIGR01584 386 AKLSIIVAPLVRGRIPTVVEKVTTV---ITPGESVDVLVTDIGVAVNDKLPKRKDLIEKLSSKKGIPLYTIE 454 (496)
T ss_pred EEEEEEECCHHHCCCCEEECCCEEE---ECCCCCEEEEECCCCEEECCCCCCCHHHHHHHCCCCCCCEECHH
T ss_conf 0876664332307756575796069---84888433898142179738889874368874167988244389
No 62
>pfam02706 Wzz Chain length determinant protein. This family includes proteins involved in lipopolysaccharide (lps) biosynthesis. This family comprises the whole length of chain length determinant protein (or wzz protein) that confers a modal distribution of chain length on the O-antigen component of lps. This region is also found as part of bacterial tyrosine kinases.
Probab=35.70 E-value=27 Score=14.21 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=10.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5367679999999999999999
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIA 23 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~ 23 (263)
++++++.+++.++++++++++.
T Consensus 13 ~r~~~~i~~~~~~~~~~~~~~~ 34 (139)
T pfam02706 13 WKRKKLIILVTLLFALLAAAYA 34 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9988999999999999999998
No 63
>TIGR00247 TIGR00247 conserved hypothetical protein TIGR00247; InterPro: IPR003770 This family contains several aminodeoxychorismate lyase proteins. Aminodeoxychorismate lyase is a pyridoxal 5'-phosphate-dependent enzyme that converts 4-aminodeoxychorismate to pyruvate and p-aminobenzoate, a precursor of folic acid in bacteria . .
Probab=35.45 E-value=27 Score=14.19 Aligned_cols=27 Identities=7% Similarity=0.279 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 536767999999999999999999834
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLVS 28 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~~ 28 (263)
+++||+++.+.++|+++++++.+....
T Consensus 12 nkkri~i~~~~vll~~~gs~~~y~~~~ 38 (373)
T TIGR00247 12 NKKRIIILLLLVLLLIIGSILLYKISL 38 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 566899999999999998899887775
No 64
>PRK10893 hypothetical protein; Provisional
Probab=35.32 E-value=27 Score=14.17 Aligned_cols=22 Identities=27% Similarity=0.161 Sum_probs=12.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5367679999999999999999
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIA 23 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~ 23 (263)
|.|||+.++++++..++.|+..
T Consensus 3 ~~~~w~~~~l~~~a~~l~~w~~ 24 (190)
T PRK10893 3 KTRRWVIIVLSLAALVLIGWNM 24 (190)
T ss_pred HHHHHHHHHHHHHHHHHHEEEE
T ss_conf 2577999999999999850551
No 65
>COG3944 Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]
Probab=34.47 E-value=28 Score=14.09 Aligned_cols=49 Identities=12% Similarity=0.288 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEE
Q ss_conf 7999999999999999999834555443322233678704899972636889662753413
Q gi|254780728|r 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 (263)
Q Consensus 7 ~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~ 67 (263)
+.+++.+++.++++++.++.+.+ .-...++++|-.++ .-.+-.+-.|+.
T Consensus 20 lIlivti~~~~~~~~~sffvi~P-----------~YqssTqilV~~~~-~~~~~~~~qdvq 68 (226)
T COG3944 20 LILIVTILFVAISAIVSFFVIKP-----------TYQSSTQILVNQSD-GDSTNLQFQDVQ 68 (226)
T ss_pred HHHHHHHHHHHHHHHHHEEECCC-----------CCCCCEEEEEECCC-CCCCHHHHHHHH
T ss_conf 99999999999998882144474-----------44341699996268-998004688899
No 66
>TIGR00008 infA translation initiation factor IF-1; InterPro: IPR004368 This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (IPR003029 from INTERPRO).; GO: 0003743 translation initiation factor activity, 0006413 translational initiation.
Probab=32.45 E-value=30 Score=13.89 Aligned_cols=19 Identities=32% Similarity=0.289 Sum_probs=13.8
Q ss_pred CCCCCCEEEEEEEECCCCC
Q ss_conf 2178988999995068887
Q gi|254780728|r 145 MIKPNDHVDVVMVRSLSER 163 (263)
Q Consensus 145 ~i~pGd~VDV~~~~~~~~~ 163 (263)
.|.|||+|+|-++.-.-.+
T Consensus 44 riLpGD~V~ve~SpYdl~~ 62 (69)
T TIGR00008 44 RILPGDKVKVELSPYDLTR 62 (69)
T ss_pred EECCCCEEEEEECCCCCCC
T ss_conf 5547987899871364877
No 67
>KOG1708 consensus
Probab=31.49 E-value=31 Score=13.80 Aligned_cols=59 Identities=10% Similarity=-0.003 Sum_probs=41.6
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf 02127982799997160103456217898899999506888762214511597899961
Q gi|254780728|r 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 (263)
Q Consensus 122 s~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~~~~~il~~v~Vlav~ 180 (263)
.....++.|--..+++...--.=++.+||+|.|+.-.+....+.+++++-++--|+--|
T Consensus 49 ~qk~~~w~rrr~~~~e~i~d~dw~ff~GDtVeVlvGkDkGkqG~Vtqv~r~~s~VvV~g 107 (236)
T KOG1708 49 LQKNKPWERRRCVPVEPIIDEDWHFFFGDTVEVLVGKDKGKQGEVTQVIRHRSWVVVKG 107 (236)
T ss_pred HHHCCCCCCCCCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCEEEEEEECCCEEEECC
T ss_conf 76567510204777777534521683498799975156774313899860476489726
No 68
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.74 E-value=25 Score=14.41 Aligned_cols=27 Identities=19% Similarity=0.231 Sum_probs=10.8
Q ss_pred CCHHHHHH--HHHHHHHHHHHHHHHHHHH
Q ss_conf 95367679--9999999999999999983
Q gi|254780728|r 1 MKLTRLMG--IVVSGVFALVAGIIAMRLV 27 (263)
Q Consensus 1 Mk~~~i~~--l~~~~vla~~a~~~~~~~~ 27 (263)
||+|-++. +++.+++++...++.+++.
T Consensus 1 ~Rkk~~~~i~ii~viflai~~s~~~~~~~ 29 (161)
T COG5353 1 MRKKHLIIIIIILVIFLAIILSIALFFWK 29 (161)
T ss_pred CCCEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 97247662246889999999999998757
No 69
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=29.02 E-value=35 Score=13.55 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=15.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 9536767999999999999999999834
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS 28 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~ 28 (263)
|.||.+|.++...+.+.+++..++-++.
T Consensus 12 ~sRR~FL~~at~g~ga~~a~ga~~P~V~ 39 (178)
T PRK13474 12 MGRRQFMNLLTFGTVTGVALGALYPVVK 39 (178)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 5199999999999999999999999998
No 70
>PRK11479 hypothetical protein; Provisional
Probab=28.81 E-value=35 Score=13.52 Aligned_cols=85 Identities=18% Similarity=0.262 Sum_probs=49.1
Q ss_pred EEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECCCEE
Q ss_conf 44202278871255550014676300212798279999716010345621789889999950688876221451159789
Q gi|254780728|r 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 (263)
Q Consensus 97 ~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~~~~~il~~v~V 176 (263)
+.-.|+.+|+++..+... .-.=|-|.++++ +=.++-||.- .+.+++.+-.+||+
T Consensus 59 i~~~DL~pGDiLlSS~~g---------i~S~GIRlFS~s------------~VSHaaIYLG-----~g~VAEAvGsGVri 112 (273)
T PRK11479 59 ITEPDLKPGDLLFSSSLG---------VTSFGIRVFSTS------------SVSHVAIYLG-----ENNVAEATGAGVQI 112 (273)
T ss_pred CCCCCCCCCCEEEECCCC---------CCEEEEEEEECC------------CCCEEEEEEC-----CCHHHHHHCCCEEE
T ss_conf 561127876578752567---------434347876125------------6511467854-----75376763585389
Q ss_pred EEEECCCCCCCCCCCCCEEEE---EECHHHHHHHH-HHHH
Q ss_conf 996155566666766616999---85899999999-9986
Q gi|254780728|r 177 IAIDHNIDSDERVLVGSTATL---ELTPMQAKALV-AAQS 212 (263)
Q Consensus 177 lav~~~~~~~~~~~~~~~vtL---~v~p~qa~~l~-~A~~ 212 (263)
+..++..+.. ...+.| .++|++|++|. .|.+
T Consensus 113 i~L~~ai~~s-----n~~valR~p~LTp~~a~klr~fa~~ 147 (273)
T PRK11479 113 VSLKKAIKHS-----DKLFVLRVPDLTPQQATKITAFANK 147 (273)
T ss_pred EEHHHHHHHH-----CCEEEEECCCCCHHHHHHHHHHHHH
T ss_conf 8889976200-----6589997599997999999999976
No 71
>KOG0480 consensus
Probab=25.59 E-value=40 Score=13.18 Aligned_cols=36 Identities=22% Similarity=0.467 Sum_probs=27.4
Q ss_pred EEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEE
Q ss_conf 021279827999971601034562178988999995
Q gi|254780728|r 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 (263)
Q Consensus 122 s~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~ 157 (263)
...+|+|-.+-++.+-...-.-+.++|||+||+.-+
T Consensus 214 ~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~TGi 249 (764)
T KOG0480 214 QAEIPRGSIPRTVDVILRGDLVETAQPGDKVDITGI 249 (764)
T ss_pred HHHCCCCCCCCEEEEEEHHHHHHHCCCCCEEEEEEE
T ss_conf 412789998840699981445754579987999989
No 72
>pfam11337 DUF3139 Protein of unknown function (DUF3139). This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=25.36 E-value=41 Score=13.15 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=11.1
Q ss_pred CCHHHHHHHHHHHHH-HHHHHHHHH
Q ss_conf 953676799999999-999999999
Q gi|254780728|r 1 MKLTRLMGIVVSGVF-ALVAGIIAM 24 (263)
Q Consensus 1 Mk~~~i~~l~~~~vl-a~~a~~~~~ 24 (263)
||++.++.+++.++. .++.++..+
T Consensus 1 MkKkkvi~~ii~ii~is~~v~~~~~ 25 (85)
T pfam11337 1 MKKYKVIFIVIILIVISLFVGIVLF 25 (85)
T ss_pred CCCEEEHHHHHHHHHHHHHHHHHHH
T ss_conf 9740221578999999999999998
No 73
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=25.28 E-value=41 Score=13.14 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCC-CEEEEEECCCEEEEEECCCCCCCCCCCCCEEEEEECHHHHHHHHHHHHCCEEEE
Q ss_conf 0345621789889999950688876-221451159789996155566666766616999858999999999986274999
Q gi|254780728|r 140 SAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 (263)
Q Consensus 140 ~~v~g~i~pGd~VDV~~~~~~~~~~-~~~~~il~~v~Vlav~~~~~~~~~~~~~~~vtL~v~p~qa~~l~~A~~~G~l~l 218 (263)
+.+--++..| ||++++..+|+.. .....+-.+++||.+...+.. ++ =+.+++|+.|.++.-+-..|..++
T Consensus 91 ~~~r~~~~~g--VdlIvfaGGDGTarDVa~av~~~vPvLGipaGvk~------~S-gvfA~~P~~aa~l~~~~lkg~~r~ 161 (355)
T COG3199 91 NAVRRMVERG--VDLIVFAGGDGTARDVAEAVGADVPVLGIPAGVKN------YS-GVFALSPEDAARLLGAFLKGNARL 161 (355)
T ss_pred HHHHHHHHCC--CEEEEEECCCCCHHHHHHHCCCCCCEEEECCCCCE------EC-CCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 9999998659--61999957885299998532678866741356502------03-520148277899999985343212
Q ss_pred EEECCCCCCC
Q ss_conf 9955554665
Q gi|254780728|r 219 VLRSIADLNP 228 (263)
Q Consensus 219 ~Lrs~~d~~~ 228 (263)
.=|-+-|-+.
T Consensus 162 ~~r~V~didE 171 (355)
T COG3199 162 ENREVVDIDE 171 (355)
T ss_pred CCCCCCCCCH
T ss_conf 4566644434
No 74
>pfam03658 UPF0125 Uncharacterized protein family (UPF0125).
Probab=25.24 E-value=41 Score=13.14 Aligned_cols=19 Identities=11% Similarity=0.167 Sum_probs=13.5
Q ss_pred CCCCCCCCCEEEEEEEECC
Q ss_conf 4562178988999995068
Q gi|254780728|r 142 VGGMIKPNDHVDVVMVRSL 160 (263)
Q Consensus 142 v~g~i~pGd~VDV~~~~~~ 160 (263)
....|+.||||.||=....
T Consensus 58 l~~~L~~GDRVEIYRPL~~ 76 (83)
T pfam03658 58 LDDPLKDGDRIEIYRPLLA 76 (83)
T ss_pred CCCCCCCCCEEEEECCCCC
T ss_conf 8770799999999536655
No 75
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=24.86 E-value=35 Score=13.54 Aligned_cols=19 Identities=16% Similarity=0.177 Sum_probs=14.4
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9536767999999999999
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVA 19 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a 19 (263)
||+.|++.+++++++++|+
T Consensus 1 ~~~~rll~l~~~l~L~gC~ 19 (460)
T PRK09837 1 MSPCKLLPFCVALALTGCS 19 (460)
T ss_pred CCHHHHHHHHHHHHHCCCC
T ss_conf 9757899999999982477
No 76
>PRK10139 serine endoprotease; Provisional
Probab=24.68 E-value=42 Score=13.08 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=29.9
Q ss_pred CCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCE-------------EEEEECCCC-------CCCCCCCCCCCEEEE
Q ss_conf 504420227887125555001467630021279827-------------999971601-------034562178988999
Q gi|254780728|r 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR-------------AATMDISIS-------SAVGGMIKPNDHVDV 154 (263)
Q Consensus 95 G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~r-------------avsi~v~~~-------~~v~g~i~pGd~VDV 154 (263)
|.=+..+=..|-++|.++++...+ .+...+..|++ .--|.++.. -+-+..+++||+|=-
T Consensus 92 GSG~iids~dG~IvTN~HVV~~a~-~i~V~l~dg~~~~A~vvG~D~~~DlAvlki~~~~~l~~~~~gdS~~l~vG~~ViA 170 (455)
T PRK10139 92 GSGVIIDAAKGYVLTNNHVINQAQ-KISIQLNDGREFDAKLIGSDDQSDIALLQIQNPSKLTQIAIADSDKLRVGDFAVA 170 (455)
T ss_pred CCEEEEECCCCEEECCHHHHCCCC-EEEEEECCCCEEEEEEEEECCCCCEEEEEECCCCCCCEEECCCCCCCCCCCEEEE
T ss_conf 677999899988982879949986-8999917999998999983578667999952688895445578665768998999
Q ss_pred EE
Q ss_conf 99
Q gi|254780728|r 155 VM 156 (263)
Q Consensus 155 ~~ 156 (263)
+-
T Consensus 171 iG 172 (455)
T PRK10139 171 VG 172 (455)
T ss_pred EE
T ss_conf 86
No 77
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=24.45 E-value=42 Score=13.05 Aligned_cols=39 Identities=10% Similarity=0.169 Sum_probs=23.9
Q ss_pred CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCC
Q ss_conf 3002127982799997160103456217898899999506888
Q gi|254780728|r 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 (263)
Q Consensus 120 ~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~ 162 (263)
.+.-.+.++.. +++|.....+.++.+-|.= |++....++
T Consensus 79 ~v~F~iTD~~~--~i~V~Y~GilPDLFrEGqG--VVaeG~~~~ 117 (161)
T PRK13165 79 KVSFTVYDAGG--SVTVTYEGILPDLFREGQG--IVAQGVLEE 117 (161)
T ss_pred EEEEEEECCCC--EEEEEECCCCCHHHHCCCE--EEEEEEECC
T ss_conf 79999976886--7999984779403326983--999999879
No 78
>pfam07172 GRP Glycine rich protein family. This family of proteins includes several glycine rich proteins as well as two nodulins 16 and 24. The family also contains proteins that are induced in response to various stresses.
Probab=24.44 E-value=42 Score=13.05 Aligned_cols=12 Identities=17% Similarity=0.083 Sum_probs=6.8
Q ss_pred CCHHHHHHHHHH
Q ss_conf 953676799999
Q gi|254780728|r 1 MKLTRLMGIVVS 12 (263)
Q Consensus 1 Mk~~~i~~l~~~ 12 (263)
|-+|.+++|.+.
T Consensus 1 MaSKa~llLgll 12 (91)
T pfam07172 1 MASKALLLLGLL 12 (91)
T ss_pred CCCHHHHHHHHH
T ss_conf 950579999999
No 79
>PRK01777 hypothetical protein; Validated
Probab=23.95 E-value=43 Score=12.99 Aligned_cols=20 Identities=10% Similarity=0.210 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEEEEEECCC
Q ss_conf 45621789889999950688
Q gi|254780728|r 142 VGGMIKPNDHVDVVMVRSLS 161 (263)
Q Consensus 142 v~g~i~pGd~VDV~~~~~~~ 161 (263)
....|+.||||.||=....|
T Consensus 61 ld~~L~~GDRVEIYRPL~~D 80 (95)
T PRK01777 61 LTDVLRDGDRVEIYRPLLAD 80 (95)
T ss_pred CCCCCCCCCEEEEECCCCCC
T ss_conf 87728999999985365549
No 80
>pfam12072 DUF3552 Domain of unknown function (DUF3552). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with pfam00013, pfam01966. This domain has a single completely conserved residue A that may be functionally important.
Probab=23.83 E-value=43 Score=12.98 Aligned_cols=23 Identities=9% Similarity=0.268 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 67999999999999999999834
Q gi|254780728|r 6 LMGIVVSGVFALVAGIIAMRLVS 28 (263)
Q Consensus 6 i~~l~~~~vla~~a~~~~~~~~~ 28 (263)
++..+++++++++.||++..+..
T Consensus 3 Ii~~i~~~~iG~~~G~~~~~~~~ 25 (201)
T pfam12072 3 IILAIIALVVGFAIGYFVRKSIA 25 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 39999999999999999999999
No 81
>KOG0482 consensus
Probab=22.60 E-value=46 Score=12.83 Aligned_cols=80 Identities=18% Similarity=0.166 Sum_probs=50.0
Q ss_pred CCCCCCC---HHHCCCCCCC---CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC--------CCCCCEEE
Q ss_conf 7887125---5550014676---30021279827999971601034562178988999995068--------88762214
Q gi|254780728|r 103 LKGDPIR---LEKLVDRGNG---GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--------SERKPTVT 168 (263)
Q Consensus 103 ~~G~~i~---~~~l~~~~~~---~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~--------~~~~~~~~ 168 (263)
..|.+.. .++|..-..- .++..+|-|.-+-++.+.-.....-..+|||+|+|--.+-. -..+..+.
T Consensus 216 ~~G~L~lqtRgSKFikfQe~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLlad 295 (721)
T KOG0482 216 AGGRLYLQTRGSKFIKFQEVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLAD 295 (721)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCEECCCCCEEEEEEEECCCCHHHHHHHHHHHHHH
T ss_conf 58818998321113034565698874558877667515899730000105899879996655166135379987346787
Q ss_pred EEECCCEEEEEECC
Q ss_conf 51159789996155
Q gi|254780728|r 169 VVLSNIRVIAIDHN 182 (263)
Q Consensus 169 ~il~~v~Vlav~~~ 182 (263)
+.|+--+|..+.+.
T Consensus 296 tYLeAh~v~~~nk~ 309 (721)
T KOG0482 296 TYLEAHRVVQINKK 309 (721)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 78877666553045
No 82
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=22.29 E-value=47 Score=12.80 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=11.8
Q ss_pred CCCCEEECCCCCCCCCCH
Q ss_conf 035044202278871255
Q gi|254780728|r 93 LDGVLVRVPILKGDPIRL 110 (263)
Q Consensus 93 ~~G~~~~~~i~~G~~i~~ 110 (263)
+.|++......+|..+..
T Consensus 104 ~~G~V~~~~~~~G~fl~A 121 (214)
T PRK05305 104 VSGTVTKVEYRPGKFLNA 121 (214)
T ss_pred CCEEEEEEEECCCCCCCC
T ss_conf 304999999868851135
No 83
>PRK13484 putative iron-regulated outer membrane virulence protein; Provisional
Probab=21.55 E-value=48 Score=12.71 Aligned_cols=19 Identities=16% Similarity=0.123 Sum_probs=13.4
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q ss_conf 9536767999999999999
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVA 19 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a 19 (263)
||.|.+++.+++++|.+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~ 19 (682)
T PRK13484 1 MKNKYIIAPGIAVMCSAVI 19 (682)
T ss_pred CCCEEHHHHHHHHHHHHHH
T ss_conf 9721248999999998875
No 84
>pfam03748 FliL Flagellar basal body-associated protein FliL. This FliL protein controls the rotational direction of the flagella during chemotaxis. FliL is a cytoplasmic membrane protein associated with the basal body.
Probab=21.07 E-value=49 Score=12.65 Aligned_cols=12 Identities=17% Similarity=0.304 Sum_probs=5.1
Q ss_pred CCCCCEEEEEEE
Q ss_conf 178988999995
Q gi|254780728|r 146 IKPNDHVDVVMV 157 (263)
Q Consensus 146 i~pGd~VDV~~~ 157 (263)
+.+|..-|||.+
T Consensus 129 l~~~~V~~V~ft 140 (145)
T pfam03748 129 LLEGEVEDVLFT 140 (145)
T ss_pred HCCCCEEEEEEE
T ss_conf 375854699888
Done!