HHsearch results for GI: 254780728 and protein with PDBid: 1vli_A
>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=96.68 E-value=0.0012 Score=38.45 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=49.2
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf 04899972636889662753413155251---337920000211245400003-504420227887125555001467
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGN 118 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~~~~ 118 (263)
..+-++|+++|++|+.|+.+|+..++ |. ..+++.. .+.+. |+.++.++.+|++|+.+++...+.
T Consensus 314 ~rrsi~a~~~i~kG~~i~~~di~~~R-Pg~~~~Gi~~~~---------~~~ii~Gk~~~~di~~~~~I~~~di~~k~~ 381 (385)
T 1vli_A 314 AYRGIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILLKDS 381 (385)
T ss_dssp TSCEEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSCCC-
T ss_pred CCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 45799990512889897589946868-778888879899---------999867969906469979868999166578