HHSEARCH alignment of GI: 254780728 and SCOP domain: d1opsa_

Alignment

Probab=97.97  E-value=4.1e-06  Score=51.63  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=48.7

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      =+||++||++|+.||.+|+..+.-...-+|+..+         +.+.|+.++.+|.+|++|..+++-.
T Consensus         3 SiVA~~dI~~G~~lt~~~l~~Krp~p~GI~p~~~---------~~iIGKk~kkdi~~d~~L~~d~ik~   61 (64)
T d1opsa_           3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             CEEECCCCCCCCCCCHHHEEEEECCCCCCCHHHH---------HHHCCHHHHCCCCCCCCCCHHHHHC
T ss_conf             6786773289889257885787167887098899---------9974857523306988518999412

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Type III antifreeze protein, AFP III
species: Ocean pout (Macrozoarces americanus), different isoforms [TaxId: 8199]