HHSEARCH alignment of GI: 254780728 and SCOP domain: d1ucsa_

Alignment

Probab=97.04  E-value=0.00029  Score=40.78  Aligned_cols=58  Identities=10%  Similarity=0.117  Sum_probs=47.4

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC
Q ss_conf             9997263688966275341315525133792000021124540000350442022788712555500
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV  114 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~  114 (263)
                      =+||++.||.|+.||..|++.+-.-..-+|...+         .+++|+.++..+..|+.|.++++-
T Consensus         4 SVVA~q~ip~gt~LT~~mm~~KV~eP~Gipae~~---------~~iVGkqvn~~V~edetim~~mvk   61 (64)
T d1ucsa_           4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEEI---------PKLVGMQVNRAVPLGTTLMPDMVK   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBT
T ss_pred             CEEEEEEECCCCCCCHHHHHEEECCCCCCCHHHH---------HHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             1577412078754347674123127888898999---------998748871051689853366563

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Type III antifreeze protein, AFP III
species: Antarctic eel pout (Lycodichthys dearborni), RD1 isoform [TaxId: 8201]