BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (263 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust. Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV Sbjct: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG Sbjct: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 EEGKEIQIIKAGVIVNKDGEGIS Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 >gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 267 Score = 328 bits (840), Expect = 6e-88, Method: Compositional matrix adjust. Identities = 164/266 (61%), Positives = 213/266 (80%), Gaps = 3/266 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ + + NVL++K +L VGMV Sbjct: 1 MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +TP++LEWVAFP ENV GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G G Sbjct: 61 ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLL KGKRA +DIS+S+AVGG++KPNDHVDV+MVR + ERK VVLSN+RV+AID Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180 Query: 181 HNIDS--DERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237 +D+ + L+G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + + E +D Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240 Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263 ++ G+ IQ+IK+G+I NKDGE +S Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266 >gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 270 Score = 188 bits (477), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 107/261 (40%), Positives = 162/261 (62%), Gaps = 7/261 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH-VQTEEVITENPAKFINVLISKGDLAVGM 59 MK R+M + V+ V A +AG++AM L + VQ E + E A +NVL++ +L VG Sbjct: 1 MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEAT-VNVLVADANLPVGS 59 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + W+A+P+ V G I +P+A+++L+G +VR+PI +G+PIR EK+ D + Sbjct: 60 RLNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSR 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +K VLSN+R++A+ Sbjct: 120 ILSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAV 179 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL-NPSSSEDS 234 D I+ + + +VG+TATLELTP Q K L AQ +A +L+L LRS+AD P ++ Sbjct: 180 DQQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAAD 239 Query: 235 DVWDVQEEGKEIQIIKAGVIV 255 + G +Q+IK+G I+ Sbjct: 240 YLLSGDNGGAVVQVIKSGAII 260 >gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 268 Score = 184 bits (468), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 114/270 (42%), Positives = 165/270 (61%), Gaps = 10/270 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 MK +R++ + V+ V A +AGI+AM++ V + E +I + P +NVL+S +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPT--VNVLVSSVNLPVG 58 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + + W +P NV D FI + PNA+ EL G +VR+P+ +G+P+R EK+VD Sbjct: 59 SRLNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSST 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+A Sbjct: 119 RIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLA 178 Query: 179 IDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS 234 ID I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + + Sbjct: 179 IDQQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSA 238 Query: 235 DVWDVQEEGK-EIQIIKAGVIVNKDGEGIS 263 G+ EIQ+IK+G IV K G+G S Sbjct: 239 GYLLNGGSGQPEIQVIKSGSIV-KAGQGAS 267 >gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 271 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 105/264 (39%), Positives = 164/264 (62%), Gaps = 7/264 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ + V+ A +AG++AM+L SP E ++ + P+ INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQAPS--INVLVASKSLPVGS 58 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + + W+A+P++ V +G I + ++P A+ +L G +VR+P+ G+P+R EK+ D N Sbjct: 59 RLGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNR 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AI Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAI 178 Query: 180 DHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D + D + ++G+TATLELTP Q+K + AQ +A ++SL LRS+AD + +E +D Sbjct: 179 DQQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAAD 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 239 YLLSGDGQPSIQVIKSGSIVKNDG 262 >gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 268 Score = 184 bits (467), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 114/270 (42%), Positives = 166/270 (61%), Gaps = 10/270 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 MK +R++ + V+ V A +AG++AM++ V + E +I + P +NVLIS +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPT--VNVLISSVNLPVG 58 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + + W +P+ NV D FI +P+A+ EL G +VR+P+ +G+PIR EK+VD Sbjct: 59 SRLNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSST 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+A Sbjct: 119 RIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLA 178 Query: 179 IDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS 234 ID I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + + Sbjct: 179 IDQQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSA 238 Query: 235 DVWDVQEEGK-EIQIIKAGVIVNKDGEGIS 263 G+ EIQ+IK+G IV K G+G S Sbjct: 239 GHLLSGSSGQPEIQVIKSGSIV-KSGQGAS 267 >gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 269 Score = 183 bits (464), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ R++ + V+ A +AG++AM+L QT E + E A INVL++ L VG Sbjct: 1 MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQ-APTINVLVAGKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W A+P++ V +G I + ++P A+++L G +VR+PI G+P+R EK+ D N Sbjct: 60 LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ E + +VG+TATLELTP Q+K + AQ +A ++SL LRS+AD + +D Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDG 262 >gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4] Length = 269 Score = 179 bits (454), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 146/232 (62%), Gaps = 7/232 (3%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 Q+E V+T+ P VLI+ L VG +T + W+ +P+ ++ DGF+ + ++P A+ + Sbjct: 36 QSEPVVTKEPT--TKVLIAAASLPVGARLTDKAMRWMDWPKTDLVDGFVTEENRPQALSD 93 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 L G++VR+PI +G+PIR+EK+ D + LS+LLP GKRA + +IS+++ GG I PND V Sbjct: 94 LAGLVVRLPIFEGEPIRIEKIADASSRTLSALLPAGKRAISTEISVATGAGGFILPNDRV 153 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVA 209 DV+MVR VLSN+RV+AID I+ R ++G+TATLELTP Q K L Sbjct: 154 DVIMVRKGDNDNHLTETVLSNVRVLAIDQQIEEKNDGTRSVIGTTATLELTPEQTKVLTV 213 Query: 210 AQSVA-KLSLVLRSIADLNPS-SSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 AQ +A +LSL LRS+AD +S S + G ++Q+IK+G IV G Sbjct: 214 AQQMAERLSLALRSVADAQEQDNSSASYLLSGDSGGPQVQVIKSGQIVKSAG 265 >gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 269 Score = 178 bits (451), Expect = 9e-43, Method: Compositional matrix adjust. Identities = 106/264 (40%), Positives = 160/264 (60%), Gaps = 7/264 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ + V+ A +AG++AM+L +P E VI + P INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQAPT--INVLVAGKSLPVGS 58 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + + W A+P++ + +G I + +P+A+ +L G +VR+PI G+P+R EK+ D N Sbjct: 59 RLGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNR 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AI Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAI 178 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I+ E + +VG+TATLELTP Q+K + Q +A ++SL LRS+AD + +D Sbjct: 179 DQQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAAD 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 239 HLLNGDGQPSIQVIKSGSIVKGDG 262 >gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 271 Score = 175 bits (443), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 104/244 (42%), Positives = 150/244 (61%), Gaps = 10/244 (4%) Query: 21 IIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 +AM++ V Q + VI + P +N+L+S +LAVG + + W+ +P+ V Sbjct: 21 FLAMQMAGNGGVVTQVQSVIEKEPT--VNILVSSANLAVGERLDDKSVHWMPWPQGGVVP 78 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 G I + +P+A+++L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+ Sbjct: 79 GLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRILSSLLPAGKRAVATEISV 138 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGST 194 ++ GG I PND VDV+MVR +E +T VLSN+RV+AID I D + +VG+T Sbjct: 139 ATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTT 198 Query: 195 ATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAG 252 ATLELTP Q K L AQ +A +LSL LRS+AD + +D + G IQ+IK+G Sbjct: 199 ATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSG 258 Query: 253 VIVN 256 IV Sbjct: 259 AIVT 262 >gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5] gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512] Length = 271 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/244 (44%), Positives = 152/244 (62%), Gaps = 10/244 (4%) Query: 24 MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 MR+ V Q + VI + P +NVL+S G+LAVG + + W+A+P+ V G I Sbjct: 24 MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 ++ +P+A+++L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ Sbjct: 82 TEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197 GG I PND VDV+MVR +E +T VLSN+RV+AID I D + +VG+TATL Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201 Query: 198 ELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIV 255 ELTP Q K L AQ +A +LSL LRS+AD + +D + G IQ+IK+G IV Sbjct: 202 ELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGSIV 261 Query: 256 NKDG 259 G Sbjct: 262 TDAG 265 >gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43] gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43] Length = 269 Score = 173 bits (439), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 102/245 (41%), Positives = 154/245 (62%), Gaps = 12/245 (4%) Query: 22 IAMRLVSP----HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 +AM L +P + + VI + P ++VL+ L VG + +EW +PE+ V Sbjct: 22 LAMNLTAPTVQVNEISATPVIEKMPT--LDVLVVSASLPVGARLNEETMEWKGWPEDAVT 79 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 +G I +P+A+ EL G +VR+P+ G+P+R EK+VD + +SSLLP GKRA +IS Sbjct: 80 EGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDSSSRIMSSLLPAGKRAIATEIS 139 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSD---ERVLVGS 193 ++++ GG I PND VDV+MVR +E++ +T V+LSNIRV+AID I+ D R VG+ Sbjct: 140 VATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIRVLAIDQRIEEDAQGNRTAVGT 199 Query: 194 TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKA 251 TATLELTP Q+K + AQ +A +L+L LRS+AD+ ++ + E+G IQ+I++ Sbjct: 200 TATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDTDGAKHLLSGEDGTSAIQLIRS 259 Query: 252 GVIVN 256 G I N Sbjct: 260 GAITN 264 >gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42] Length = 271 Score = 172 bits (437), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 10/244 (4%) Query: 24 MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 MR+ V Q + VI + P +N+L+S +L VG + + + W+A+P+E V GFI Sbjct: 24 MRMAGSGGVVTQVQSVIKKEPT--VNILVSNKNLPVGARLGDDSVHWMAWPKEGVVQGFI 81 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 + +P+A+++L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ Sbjct: 82 TEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197 GG I PND VDV+MVR +E +T VLSN+RV+AID I D + +VG+TATL Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKTVVGTTATL 201 Query: 198 ELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIV 255 ELTP Q K L AQ +A +LSL LRS+AD + +D + G IQ+IK+G IV Sbjct: 202 ELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIV 261 Query: 256 NKDG 259 G Sbjct: 262 TDAG 265 >gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 271 Score = 168 bits (426), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 102/233 (43%), Positives = 146/233 (62%), Gaps = 8/233 (3%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 Q V+ + P +N+L+S G+L+VG + + W+A+P+ V G I + +P+A+++ Sbjct: 35 QVRSVVEKEPT--VNILVSSGNLSVGARLDDQAVHWMAWPQGGVVPGLITETDKPDAIKD 92 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ GG I PND V Sbjct: 93 LQGAVVRLPIFEGEPIRPEKIADSSSRILSSLLPAGKRAVATEISVATGAGGFILPNDRV 152 Query: 153 DVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALV 208 DV+MVR +E +T VLSN+RV+AID I D + +VG+TATLELTP Q K L Sbjct: 153 DVIMVRKGAEADKLITETVLSNVRVLAIDQQIQEKDDGSKSVVGTTATLELTPDQTKVLA 212 Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIVNKDG 259 AQ +A +LSL LRS+AD + +D + G IQ+IK+G IV G Sbjct: 213 VAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIVTDAG 265 >gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 165 bits (417), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 100/230 (43%), Positives = 144/230 (62%), Gaps = 8/230 (3%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 Q V+ + P +N+L+S +L+VG + + W+A+P+ V G I + +P+A+++ Sbjct: 35 QVRSVVEKEPT--VNILVSSANLSVGARLDDQSVHWMAWPQGGVVPGLITEADKPDAVKD 92 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ GG I PND V Sbjct: 93 LQGAVVRLPIFEGEPIRPEKIADSSSRILSSLLPAGKRAVATEISVATGAGGFILPNDRV 152 Query: 153 DVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALV 208 DV+MVR +E +T VLSN+RV+AID I D + +VG+TATLELTP Q K L Sbjct: 153 DVIMVRKGAEADKLITETVLSNVRVLAIDQQIQEKDDGSKSVVGTTATLELTPDQTKVLA 212 Query: 209 AAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE-IQIIKAGVIVN 256 AQ +A +LSL LRS+AD + +D + G IQ+IK+G IV Sbjct: 213 VAQQMADRLSLALRSVADAQEQDTSAADYLLSGDNGSAIIQVIKSGAIVT 262 >gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56] Length = 214 Score = 159 bits (402), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 94/203 (46%), Positives = 132/203 (65%), Gaps = 6/203 (2%) Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + + W+A+P++ V GFI + +P+A+++L G +VR+PI +G+PIR EK+ D + LSS Sbjct: 7 DTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSS 66 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHN 182 LLP GKRA +IS+++ GG I PND VDV+MVR +E +T VLSN+RV+AID Sbjct: 67 LLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQ 126 Query: 183 I---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWD 238 I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 127 IQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAADYLL 186 Query: 239 VQEEGKE-IQIIKAGVIVNKDGE 260 + G IQ+IK+G IV GE Sbjct: 187 SGDNGSAIIQVIKSGSIVTDAGE 209 >gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188] Length = 271 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 99/250 (39%), Positives = 136/250 (54%), Gaps = 24/250 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 1 MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +P E V DG+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 61 LTSQ-MRWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVV 170 +SS+LP G RA I+ S+ GG I PND VDV+M R RKP T V Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTR----RKPDNGDKSLTPFTTETV 175 Query: 171 LSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL 226 L N+RV+AID I DE +V+VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 176 LQNVRVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDV 235 Query: 227 NPSSSEDSDV 236 ED D+ Sbjct: 236 -----EDKDI 240 >gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 148 bits (374), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 97/250 (38%), Positives = 136/250 (54%), Gaps = 24/250 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 9 MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +P E + +G+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 69 LTSQ-MRWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVV 170 +SS+LP G RA I+ S+ GG I PND VDV+M R RKP T V Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTR----RKPDNGDKSLTPFTTETV 183 Query: 171 LSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADL 226 L N+RV+AID I DE +V+VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 184 LQNVRVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDV 243 Query: 227 NPSSSEDSDV 236 ED D+ Sbjct: 244 -----EDRDI 248 >gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] Length = 260 Score = 146 bits (369), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 95/257 (36%), Positives = 143/257 (55%), Gaps = 31/257 (12%) Query: 14 VFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 A+ AG +A L S P QT ++ T ++VL++K D+ +G VT N + W Sbjct: 10 TIAVGAGGLAAYLASGSDKKPQPAQTAQLQT------VDVLVAKSDIPLGQAVTANDVAW 63 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPK 127 A+P + FI +P+A +L G + R P + G+PIR KLV +G+G ++++LP Sbjct: 64 QAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSGFMAAILPT 123 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVLSNIRVIAI 179 G RA + +IS + GG I PND VDV++ S ++ P +LSN+RV+A+ Sbjct: 124 GMRAISTEISPETGAGGFILPNDRVDVIL--SQRDKNPDHPNANSVNSETILSNVRVLAV 181 Query: 180 DHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSDV 236 D I+ + ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N P SS D Sbjct: 182 DQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPESSTDDQR 241 Query: 237 WDVQEEGKEIQIIKAGV 253 D I I++ GV Sbjct: 242 RD------SINIVRYGV 252 >gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] Length = 293 Score = 146 bits (368), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 87/223 (39%), Positives = 130/223 (58%), Gaps = 11/223 (4%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 E P K VL++ DL++G V L+W ++PE+ + I +P+A++ L G L R Sbjct: 63 EPPIKLAEVLVTSRDLSMGEAVD-EALDWQSWPEDGIGPTLIRKSDRPDALETLKGSLAR 121 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 G+P+R KL+ G +S++LP GKRA + I+ ++ GG + PNDHVDV+M R Sbjct: 122 QSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDVIMTRR 181 Query: 160 LSERKPT-----VTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQS 212 +S + VL N+RV+AID I E+V+VGSTATLE+ P QA+AL AAQ Sbjct: 182 VSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEALTAAQQ 241 Query: 213 VA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAG 252 +A +L L LRS+AD P S + QE + +I++++ G Sbjct: 242 IADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYG 284 >gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1] gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1] Length = 270 Score = 145 bits (366), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 93/242 (38%), Positives = 136/242 (56%), Gaps = 13/242 (5%) Query: 22 IAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 +A L SP V E P +VL+ D+ VG + + W A+P E+V D F Sbjct: 22 LAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGEPINGAAM-WQAWPAESVMDAF 80 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 I +P+A++ + + R+P+ G+P+R KLV G+ L+++LP GKRA I+ + Sbjct: 81 ITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDSFLAAILPPGKRAVATRIAADT 140 Query: 141 AVGGMIKPNDHVDVVMVRSLSE-RKPT---VTVVLSNIRVIAIDHNIDSDE---RVLVGS 193 + GG I PND VDV+M R E P VL NIRV+AID I DE RV +G Sbjct: 141 SAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIRVLAIDQTIHEDEEGRRVKLGE 200 Query: 194 TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIK 250 TATLELTP +A+ + AQ +A +L+L LRS+AD N ++ D + V G+ +++IK Sbjct: 201 TATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT-DRGLHLVTGTGRGDSVRLIK 259 Query: 251 AG 252 +G Sbjct: 260 SG 261 >gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] Length = 275 Score = 145 bits (365), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 145/253 (57%), Gaps = 23/253 (9%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 A+ AG +A L S +T+ V TE + ++VL++K D+ +G VT N + W +P Sbjct: 25 TIAVGAGGLAAYLASGSDKETQPVQTEQ-LRTVDVLVAKSDIPLGQAVTANDVAWQTWPA 83 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA 132 ++ FI +P+A +L G + R P + G+PIR KLV +G+G ++++LP G RA Sbjct: 84 DSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSGFMAAILPTGMRAI 143 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV----------TVVLSNIRVIAIDHN 182 + +IS + GG I PND VDV+ LS+R+ VL N+RV+AID Sbjct: 144 STEISPETGAGGFILPNDRVDVI----LSKREKNADHASGDSVNSETVLGNVRVLAIDQT 199 Query: 183 ID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 I+ + ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N + + D+ D + Sbjct: 200 IEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---APEGDINDRR 256 Query: 241 EEGKEIQIIKAGV 253 + I +++ GV Sbjct: 257 RD--SINVVRYGV 267 >gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] Length = 266 Score = 144 bits (363), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 83/223 (37%), Positives = 129/223 (57%), Gaps = 16/223 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + + VL++K D+ +G V P L+W +P FI QPNA +L G + R P + Sbjct: 47 QTVEVLVAKNDIPLGQAVAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFI 106 Query: 104 KGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLS 161 G+PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ R + Sbjct: 107 AGEPIREQKLVKANGSGFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKN 166 Query: 162 ERKPT-----VTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA 214 +P+ ++LSN+RV+A+D I+ + ++V+VG TATLEL P QA+ L A+ Sbjct: 167 SDRPSGEQIVSEIILSNVRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSG 226 Query: 215 KLSLVLRSIADL-NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 L+L LRS+AD PS++E+ D + I++ GV Sbjct: 227 TLALALRSLADAGQPSTTENDAKRD------SVNIVRYGVTTQ 263 >gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099] gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099] Length = 271 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/216 (38%), Positives = 128/216 (59%), Gaps = 12/216 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL+ GD+A+G + NI W ++P + V FI + P+A+++L G + RVP+ G+ Sbjct: 49 DVLVLSGDVAMGNALQNNI-SWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGE 107 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+R KL+ G +SS+LP G RA IS ++ GG I PND VDV+M R + Sbjct: 108 PVRRSKLIGEGQSFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGS 167 Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218 +L NIRV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L Sbjct: 168 TGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 227 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252 LR++AD + ++D + V G++ +++IK+G Sbjct: 228 ALRAVADTQEKNVGEAD-YLVSGNGRKGTVRLIKSG 262 >gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771] Length = 205 Score = 143 bits (361), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 84/184 (45%), Positives = 119/184 (64%), Gaps = 8/184 (4%) Query: 24 MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 MR+ V Q + VI + P +NVL+S G+LAVG + + W+A+P+ V G I Sbjct: 24 MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 + +P+A+++L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ Sbjct: 82 TEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197 GG I PND VDV+MVR +E +T VLSN+RV+AID I D + +VG+TATL Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201 Query: 198 ELTP 201 ELTP Sbjct: 202 ELTP 205 >gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] Length = 268 Score = 141 bits (356), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 83/202 (41%), Positives = 116/202 (57%), Gaps = 12/202 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++VL++ DL +G + P L W A+P+ +V DGFI P A+++ G VR P L G Sbjct: 46 VDVLVAAADLPMGQTLKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGG 105 Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 +PIR EKL+ G+G LS++LP G RA ++D S+ GG I PND VDV+ E Sbjct: 106 EPIRREKLIRANGSGFLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDE 165 Query: 163 RKPTVT-------VVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSV 213 T +L N+RV+A+ + + ERV+ G TATLELTP Q + + AQ V Sbjct: 166 ASRATTSDVQVSETILQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKV 225 Query: 214 AKLSLVLRSIADLNPSSSEDSD 235 +LSL LRSIAD S E+ + Sbjct: 226 GQLSLALRSIADAGISQPENPE 247 >gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278] Length = 248 Score = 141 bits (356), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 80/220 (36%), Positives = 125/220 (56%), Gaps = 17/220 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++VL++K D+ +G + P +L+W ++P FI +P E+ G + R P + G Sbjct: 26 VDVLVAKADIGLGQSIKPELLQWQSWPASTASSSFIRRNERPEGQNEVTGTIARAPFIAG 85 Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ S ER Sbjct: 86 EPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVIL--SKRERN 143 Query: 165 P---------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSV 213 P + ++L+NIRV+AID + +VG T TLEL P QA+ L A+ Sbjct: 144 PDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQT 203 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 LSL LRSIAD+N + + SD D + G + +++ G+ Sbjct: 204 GTLSLALRSIADVN-MAEQRSD--DNRRRGDSVAVVRFGI 240 >gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] Length = 260 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 25/254 (9%) Query: 14 VFALVAGIIAMRLVS-----PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 A+ AG +A L S P QT ++ T ++VL++K D+ +G VT N + W Sbjct: 10 TIAVGAGGLAAYLASGSDKKPQIAQTVQLPT------VDVLVAKSDIQLGQTVTANDVAW 63 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPK 127 +P ++ + FI +P+A +L G + R P + G+PIR KLV +G+G ++++LP Sbjct: 64 QTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSGFMAAILPT 123 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPT-----VTVVLSNIRVIAIDH 181 G RA + +IS + GG I PND VDV++ R + P+ +LSN+RV+A+D Sbjct: 124 GMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSNVRVLAVDQ 183 Query: 182 NID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 I+ + ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N + +S++ D Sbjct: 184 TIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---APESNIDDR 240 Query: 240 QEEGKEIQIIKAGV 253 + + I +++ GV Sbjct: 241 RRD--SISVVRYGV 252 >gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] Length = 273 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 74/197 (37%), Positives = 122/197 (61%), Gaps = 9/197 (4%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL++K D+ +G +T + ++W ++P F+ + +A++++ G +VR P L G+ Sbjct: 45 DVLVAKSDIPLGQTITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGE 104 Query: 107 PIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 PIR KLV G+G ++++LP G RA + +IS + GG I PNDHVDV++ R R+ Sbjct: 105 PIRETKLVKANGSGFMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREG 164 Query: 166 -----TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + ++LS++RV+AID ++ + ++V+VG TATLEL P QA+ L ++ LSL Sbjct: 165 NGESVSSEIILSDVRVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSL 224 Query: 219 VLRSIADLN-PSSSEDS 234 LRS+ D N P ED+ Sbjct: 225 ALRSLVDANKPGKVEDA 241 >gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 267 Score = 139 bits (351), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 81/205 (39%), Positives = 119/205 (58%), Gaps = 15/205 (7%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A ++VL++ DL +G ++ P L W A+P+ ++ DGF+ NA+++ G VR P Sbjct: 42 ADTVDVLVAAADLPMGQILKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPF 101 Query: 103 LKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMV-- 157 L G+PIR EKL+ G+G LS++LP G RA ++D S+ GG I PND VDV+ Sbjct: 102 LGGEPIRREKLIKANGSGFLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHR 161 Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210 R+ +L N+RV+A+ + + ERV+ G TATLELTP QA+ + A Sbjct: 162 DEEAARATKSDVQVTETILKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLA 221 Query: 211 QSVAKLSLVLRSIAD---LNPSSSE 232 Q V +LSL LRS++D + P S E Sbjct: 222 QKVGQLSLALRSLSDAGQVQPESPE 246 >gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3] Length = 202 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 81/181 (44%), Positives = 117/181 (64%), Gaps = 8/181 (4%) Query: 24 MRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 MR+ V Q + VI + P +NVL+S G+LAVG + + W+A+P+ V G I Sbjct: 24 MRMAGSGGVVTQVQSVIEKEPT--VNVLVSSGNLAVGQRLEEGSVHWMAWPQGGVVPGLI 81 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA 141 ++ +P+A+++L G +VR+PI +G+PIR EK+ D + LSSLLP GKRA +IS+++ Sbjct: 82 TEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRILSSLLPAGKRAVATEISVATG 141 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI---DSDERVLVGSTATL 197 GG I PND VDV+MVR +E +T VLSN+RV+AID I D + +VG+TATL Sbjct: 142 AGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAIDQQIQEKDDGSKAVVGTTATL 201 Query: 198 E 198 E Sbjct: 202 E 202 >gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 271 Score = 136 bits (343), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 12/216 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL+ GD+A+G + NI W +P + + FI P+A+++L G + RV + G+ Sbjct: 49 DVLVLSGDVAMGNQLENNI-AWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGE 107 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+R KL+ G +SS+LP G RA IS ++ GG I PND VDV+M R + Sbjct: 108 PVRRSKLIGEGQSFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGS 167 Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218 +L NIRV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L Sbjct: 168 TGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 227 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252 LR+I D + +++D + V G++ +++IK+G Sbjct: 228 ALRAITDTQEKNVDEAD-YLVSGNGRKGTVRLIKSG 262 >gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110] gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 136 bits (342), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 89/258 (34%), Positives = 135/258 (52%), Gaps = 16/258 (6%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVI-TENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V AL AG +A L S + + + + VL++K D+ +G V P L+W ++P Sbjct: 10 VIALGAGGVAAYLASGYDNKPAPALPVAEKLPTVEVLVAKNDIQLGQAVKPEDLQWQSWP 69 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRA 131 FI +P A ++ G + RVP+++G+PIR +KLV G+G ++++LP G RA Sbjct: 70 AATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGSGFMAAILPSGMRA 129 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTV-------TVVLSNIRVIAIDH 181 + D++ ++ GG I PND VD+V+ R L PT V+L+NIRV+AID Sbjct: 130 VSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSEVILTNIRVLAIDQ 189 Query: 182 NIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + +VG T TLEL P Q L AA+ L L LRSI D N + D+ Sbjct: 190 APKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDANATELTAEDLAIK 249 Query: 240 QEEGKEIQIIKAGVIVNK 257 + G + +I+ GV V + Sbjct: 250 RSGG--VNVIRYGVQVRQ 265 >gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] Length = 282 Score = 135 bits (341), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 16/237 (6%) Query: 33 QTEEVI-----TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 Q E VI + P K +VLIS GD+ +GM N L W +P + + +GFI +P Sbjct: 40 QQEPVIITAAPAQPPVKLEDVLISSGDVPMGMRFD-NGLSWQKWPVDGIGEGFILKNDRP 98 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 A+ EL+G + R G+P+R KL+ +G +S+LLP GKRA + I+ ++A GG I Sbjct: 99 EAIDELNGSIARQAFFAGEPVRSSKLIQSDSGFMSALLPAGKRAVAVQIAAATAAGGFIL 158 Query: 148 PNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELT 200 PNDHVDV+M R + + K VL N+RV+AID I+ E R +VGS ATLE+ Sbjct: 159 PNDHVDVIMTRRVEGDGGANAKILTETVLRNLRVLAIDQTIEDAEGQRNVVGSVATLEVD 218 Query: 201 PMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAGVI 254 QA+AL AAQ +A + L LRS+AD P S + +E+ + ++I++ G + Sbjct: 219 GEQAEALTAAQQIADRFVLSLRSLADSIPGSPGYAAFLLAEEKARRGPVRIVRYGKV 275 >gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1] Length = 266 Score = 135 bits (339), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 137/252 (54%), Gaps = 15/252 (5%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKF--INVLISKGDLAVGMVVTPNILEWVAF 71 AL AG +A LVS Q + V A+ + VL++K D+ +G + P L W + Sbjct: 10 TIALGAGGVAAYLVSTSESQ-QPVAVAPVAQLPTVEVLVAKNDIGLGQAIKPGDLVWQTW 68 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKR 130 PE + FI +P A +L G + R P + G+PIR +KLV G+G ++++LP G R Sbjct: 69 PEA-ASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSGFMAAILPAGMR 127 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP------TVTVVLSNIRVIAIDHNI 183 A + +IS + GG I PND VDV++ R + KP + ++LSN+RV+AID Sbjct: 128 AISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILSNVRVLAIDQAP 187 Query: 184 DSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 E +VG T TLEL P QA+ L A+ L+L LRSIAD+N + ++ + Sbjct: 188 KEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAADGNKNET-QMAR 246 Query: 242 EGKEIQIIKAGV 253 G I+II+ G+ Sbjct: 247 RGNAIEIIRYGI 258 >gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278] Length = 269 Score = 134 bits (338), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/253 (36%), Positives = 133/253 (52%), Gaps = 14/253 (5%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 AL AG +A LVS Q + + VL++K D+ +G + P L W +P Sbjct: 10 TIALGAGGVAAYLVSSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQAIKPGDLIWQTWP 69 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRA 131 E + FI +P A +L G + R P + G+PIR +KLV G+G ++++LP G RA Sbjct: 70 EA-ASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSGFMAAILPAGMRA 128 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVT------VVLSNIRVIAIDHNID 184 + +IS + GG I PND VDV++ R + KP ++LSN+RV+AID Sbjct: 129 ISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILSNVRVLAIDQAPK 188 Query: 185 SDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ-- 240 E +VG T TLEL P QA+ L A+ L+L LRSIAD+N + ++ Q Sbjct: 189 EKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPDTGKTETEQQQMA 248 Query: 241 EEGKEIQIIKAGV 253 G I+II+ GV Sbjct: 249 RRGNAIEIIRYGV 261 >gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] Length = 265 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 77/201 (38%), Positives = 121/201 (60%), Gaps = 15/201 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + VL++K D+ +G V P+ ++W +P FI +P+A +L G + R P + G Sbjct: 44 VEVLVAKSDIPLGQPVGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAG 103 Query: 106 DPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ S ++ Sbjct: 104 EPIREQKLVKSNGSGFMAAILPTGMRAISTEISPETGAGGFILPNDRVDVIL--SKRDQN 161 Query: 165 P---------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSV 213 P ++LSNIR++AID ++ + ++V+VG TATLEL P QA+ L A+ Sbjct: 162 PDRVKGGDVVNSEIILSNIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQS 221 Query: 214 AKLSLVLRSIADLN-PSSSED 233 LSL LRS+AD N P+ +E+ Sbjct: 222 GTLSLALRSLADANAPARTEE 242 >gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 270 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 122/216 (56%), Gaps = 12/216 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL+ GD+ +G + NI W ++P + V FI +P A+ +L G + RV + G+ Sbjct: 48 DVLVLSGDVPMGSPIQNNI-AWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGE 106 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+R KL+ G +SS+LP G RA IS ++ GG I PND VDV+M R Sbjct: 107 PLRRSKLIGEGQSFMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGA 166 Query: 167 ----VTVVLSNIRVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSL 218 +L NIRV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L Sbjct: 167 AGFNTETILKNIRVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTL 226 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKE--IQIIKAG 252 LR++AD + ++D + V G+ +++IK+G Sbjct: 227 ALRAVADTQEKNVGEAD-YLVSGNGRRGTVRLIKSG 261 >gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] Length = 265 Score = 134 bits (336), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 87/252 (34%), Positives = 137/252 (54%), Gaps = 16/252 (6%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 A+ AG +A L S Q ++VL++K D+ +G +TP ++W +P Sbjct: 10 TIAVGAGGVAAYLASGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQALTPGDVQWQVWPA 69 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAA 132 + FI +P+A ++ G + R + G+PIR KLV G+G ++++LP G RA Sbjct: 70 ATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSGFMAAILPSGMRAV 129 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------VVLSNIRVIAIDHNI 183 + +IS + GG I PND VDV++ S E+ P ++LSNIRV+AID I Sbjct: 130 STEISPETGAGGFILPNDRVDVIL--SKREKNPDARASGDGVNSEIILSNIRVLAIDQTI 187 Query: 184 D--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + + ++V+VG TATLEL P Q++ L A+ LSL LRS+AD N + ++ D D Sbjct: 188 EEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAVADTPD--DRSA 245 Query: 242 EGKEIQIIKAGV 253 + I +++ GV Sbjct: 246 KRDSINVVRFGV 257 >gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1] Length = 249 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 79/220 (35%), Positives = 122/220 (55%), Gaps = 16/220 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + VL++K D+ +G + P L+W ++P FI + E+ G++ R P + G Sbjct: 26 VEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSFIQRKDRSKGDAEVTGMIARAPFIAG 85 Query: 106 DPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ S ER Sbjct: 86 EPIREQKLVKADGSGFMAAILPAGMRAVSTEISPETGAGGFILPNDRVDVLL--SKRERN 143 Query: 165 P---------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSV 213 P + ++LSNIRV+AID + +VG T TLEL P QA+ L A+ Sbjct: 144 PEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTVVGKTVTLELKPEQAETLARARQS 203 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 LSL LRSIAD+N +E+ + + G + +I+ G+ Sbjct: 204 GTLSLALRSIADIN--VAENRSDENSRRRGDSVAVIRFGI 241 >gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] Length = 286 Score = 132 bits (331), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 88/236 (37%), Positives = 133/236 (56%), Gaps = 13/236 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEE--VITENPAKFINVLISKGDL 55 MK +L+ I V+ V +L AG + M + P VQT+ I P + VL++ D+ Sbjct: 14 MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRL--VLVAVADV 71 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 G ++ N + + +PE V F+ P A+++ G + R G+PIR K+V Sbjct: 72 PQGTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVR 131 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT-VVLSN 173 +G LS++LP GKRA ++I+ SS+ GG I PNDHVDV+M R E+ +T +L N Sbjct: 132 SDSGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQN 191 Query: 174 IRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIAD 225 IRV+A+D I+ +E + VG T TLELT Q + + AAQ + + L+L LRS+ D Sbjct: 192 IRVLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVED 247 >gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] Length = 266 Score = 131 bits (329), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 76/202 (37%), Positives = 117/202 (57%), Gaps = 16/202 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + VL++K D+ +G V P ++W +P FI +P A +L G + R + G Sbjct: 44 VEVLVAKSDIPLGQPVGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAG 103 Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ S ++ Sbjct: 104 EPIREQKLVKANGSGFMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVIL--SKRDKN 161 Query: 165 P----------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQS 212 P +LSN+RV+AID I+ + ++V+VG TATLEL P QA+ L A+ Sbjct: 162 PDRAGSGGDVVNSETILSNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQ 221 Query: 213 VAKLSLVLRSIADLN-PSSSED 233 LSL LRS+ D N P+++E+ Sbjct: 222 SGTLSLALRSLVDANAPTATEE 243 >gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 130 bits (328), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 72/192 (37%), Positives = 108/192 (56%), Gaps = 11/192 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++VL++K D+ +G V P ++W +P FI +P + ++ G + R P ++G Sbjct: 46 VDVLVAKNDIGLGQTVKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQG 105 Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PIR +KLV G+G ++++LP G RA + +IS + GG I PND VDV++ R L Sbjct: 106 EPIRDQKLVKAEGSGFMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPD 165 Query: 165 P--------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVA 214 P T ++L+NIRV+AID + +VG T TLEL P Q L AA+ Sbjct: 166 PSNGAPDIVTSEIILANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSG 225 Query: 215 KLSLVLRSIADL 226 LSL LRSI D+ Sbjct: 226 TLSLALRSIVDV 237 >gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 270 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 83/205 (40%), Positives = 121/205 (59%), Gaps = 11/205 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++VL++K ++A+G +VTP+ + W ++P ++ + F+ PN L G + R P + G Sbjct: 46 VDVLVAKSNIALGQLVTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAG 105 Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER 163 +PIR KLV G+G ++++LP G RA + +IS ++ GG I PND VDV++ R S Sbjct: 106 EPIREVKLVKPNGSGFMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSD 165 Query: 164 KP------TVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215 P T T +L+N+RV+AID E V+VG TATLELT QA+ L A+ Sbjct: 166 IPGAKDTVTSTTILTNVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGT 225 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQ 240 LSL LRSIAD +E SD D Q Sbjct: 226 LSLALRSIADAR-VVAEASDQGDKQ 249 >gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009] gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris CGA009] Length = 270 Score = 130 bits (326), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 78/190 (41%), Positives = 115/190 (60%), Gaps = 10/190 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++VL++K ++A+G +VTP+ + W ++P ++ + F+ PN L G + R P + G Sbjct: 46 VDVLVAKSNIALGQLVTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAG 105 Query: 106 DPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER 163 +PIR KLV G+G ++++LP G RA + +IS ++ GG I PND VDV++ R S Sbjct: 106 EPIREVKLVKPNGSGFMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSD 165 Query: 164 KP------TVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215 P T T +L+N+RV+AID E V+VG TATLELT QA+ L A+ Sbjct: 166 IPGAKDTVTSTTILTNVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGT 225 Query: 216 LSLVLRSIAD 225 LSL LRSIAD Sbjct: 226 LSLALRSIAD 235 >gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] Length = 272 Score = 129 bits (324), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 71/192 (36%), Positives = 112/192 (58%), Gaps = 13/192 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL++K D+ +G + + W +P FI + +A+ +L G + R P L G+ Sbjct: 44 DVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKSERASAVADLTGSIARSPFLAGE 103 Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 PIR KLV G+G ++++LP G RA + +IS + GG I PND VDV++ R +R P Sbjct: 104 PIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVMLSR--RQRNP 161 Query: 166 --------TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAK 215 + ++LS++RV+AID I+ + ++V+VG TATLEL P QA+ L ++ Sbjct: 162 DSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTATLELKPAQAEMLTRSRQSGT 221 Query: 216 LSLVLRSIADLN 227 L+L LRS+ D N Sbjct: 222 LTLALRSLVDAN 233 >gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] Length = 261 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 85/234 (36%), Positives = 126/234 (53%), Gaps = 14/234 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDL 55 MK RL V G+ ALVAG A L+ +P V + P VL++ +L Sbjct: 1 MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAEL 56 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 +G + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV Sbjct: 57 PMGQTLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVK 116 Query: 116 RGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G+G +S++LP G RA T D SS+ GG + PNDHVDV+ + + T +L++ Sbjct: 117 AGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQFAET-LLTD 175 Query: 174 IRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +RV+A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D Sbjct: 176 VRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD 229 >gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] Length = 261 Score = 126 bits (317), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 140/264 (53%), Gaps = 20/264 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS-------PHHVQTEEVITENPAKFINVLISKG 53 MK RL V G+ ALVAG A L+ P V E + P VL++ Sbjct: 1 MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEPAPVAKAEPVA--PVPMSEVLVAAA 54 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L +G + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+L Sbjct: 55 ELPMGQTLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERL 114 Query: 114 VDRGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 V G+G +S++LP G RA T D SS+ GG + PNDHVDV+ + + +L Sbjct: 115 VKAGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQ-FAETLL 173 Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +++RV+A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D + Sbjct: 174 TDVRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SAR 232 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253 ++ S+ D+ EG + +++ GV Sbjct: 233 TAALSEEADMPPEGP-MTVVRFGV 255 >gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] Length = 261 Score = 126 bits (316), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/264 (34%), Positives = 140/264 (53%), Gaps = 20/264 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS-------PHHVQTEEVITENPAKFINVLISKG 53 MK RL V G+ ALVAG A L+ P V E + P VL++ Sbjct: 1 MKPARL---AVLGI-ALVAGCGAALLMQGEEKAPEPAPVAKAEPVV--PVPMSEVLVAAA 54 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L +G + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+L Sbjct: 55 ELPMGQTLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERL 114 Query: 114 VDRGNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 V G+G +S++LP G RA T D SS+ GG + PNDHVDV+ + + +L Sbjct: 115 VKAGSGFMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKTSNEGTEQ-FAETLL 173 Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +++RV+A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D + Sbjct: 174 TDVRVLAVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQD-SAR 232 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253 ++ S+ D+ EG + +++ GV Sbjct: 233 TAALSEEADMPPEGP-MTVVRFGV 255 >gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53] gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris BisA53] Length = 268 Score = 125 bits (313), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 75/194 (38%), Positives = 111/194 (57%), Gaps = 10/194 (5%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K ++VL++K +LA+G +V P+ ++W +P ++ FI PN + G + R P + Sbjct: 44 KTVDVLVAKTNLALGQLVGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFV 103 Query: 104 KGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---- 158 G+PIR KLV G+G ++++LP G RA + +IS + GG I PND VDV++ + Sbjct: 104 AGEPIREVKLVRPNGSGFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERN 163 Query: 159 ---SLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSV 213 S+ T +L+N+RV+AID E V VG TATLEL P QA+ L A+ Sbjct: 164 SDSESSKENVTSVTILTNVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQS 223 Query: 214 AKLSLVLRSIADLN 227 LSL LRS+ D N Sbjct: 224 GTLSLALRSMVDSN 237 >gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] Length = 321 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/194 (37%), Positives = 112/194 (57%), Gaps = 12/194 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + VL++ DL VG V L W ++PEE+ F + P+A++ + G +VR ++ G Sbjct: 54 LKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDAIEAMQGAVVRTNMMAG 113 Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +P+ EK+V G G ++++L G RA ++IS +A GG I PNDHVDV++ + + Sbjct: 114 EPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFPNDHVDVLLTFEVDVER 173 Query: 165 PT-------VTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSV 213 PT + +L+N+RV+AID E +VG ATLEL+ A L+AAQ Sbjct: 174 PTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATLELSKQDAMVLMAAQER 233 Query: 214 AKLSLVLRSIADLN 227 LSLVLRSI++L+ Sbjct: 234 GDLSLVLRSISELS 247 >gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] Length = 267 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/263 (33%), Positives = 143/263 (54%), Gaps = 16/263 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +L+G V+ A +A IA ++P + V E VL++ D++VG + Sbjct: 1 MKRAQLVGFSVAFAAAALAYYIASAFMTP----PKTVTVEKQVDSTEVLVAATDISVGQI 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V W +P+ V ++ + P E G + R IL G+P+ +KL+ G G Sbjct: 57 VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116 Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVT-VVLSNI 174 G L+++LP+G RA + I +A G +I PNDHVDV++ VRS S ++ TV + N+ Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176 Query: 175 RVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 RV+AI I++ + + STATLEL P QA+ + A S+ +++L LRS+ADL+ S Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLS-SD 235 Query: 231 SEDSDVWDVQE-EGKEIQIIKAG 252 E + D+ + + ++I++ G Sbjct: 236 PERAGNLDLNKPQNNSVRIVRYG 258 >gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] Length = 259 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 79/230 (34%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +RL+ ++++ +A + + S QT V+ E + +L++ DL VG Sbjct: 1 MKASRLLVLIIALSAGGLAAWLNLSSGSREPAQTI-VVQEQEIPSLEILVAAQDLKVGTA 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T L W +PEE+V DG I P A +E G +++ + G+PIR E+L++ G Sbjct: 60 LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLSNIRVIA 178 L+++LPKGKRA + + S GG I P D VDV++ +R +L NI+V+A Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179 Query: 179 IDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 ID +S++ + TATLEL P +A+ + A + LSL LRS AD Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAAD 229 >gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] Length = 260 Score = 124 bits (312), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 87/261 (33%), Positives = 139/261 (53%), Gaps = 15/261 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLA 56 MK RL V G+ ALVAG A L+ +P + P VL++ +L Sbjct: 1 MKPARL---AVLGI-ALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELP 56 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +G + P L W+ +PE+ + G ID P +++ G ++R +PIR E+L+ Sbjct: 57 MGQTLKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKA 116 Query: 117 GNGGLSSLLPKGKRAA--TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 G+G +S++LP G RA T D SS+ GG I PNDHVD++ + + +L+++ Sbjct: 117 GSGFMSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKTSNEGSDQ-FAETLLTDV 175 Query: 175 RVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 RV+A+ + + V+ TAT+ LTP QA+ + AQ V +LSLVLRSI D + ++ Sbjct: 176 RVLAVGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQD-SARTAA 234 Query: 233 DSDVWDVQEEGKEIQIIKAGV 253 S+ D+ EG + +++ GV Sbjct: 235 LSEEADLPPEGP-MTVVRFGV 254 >gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234] gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 263 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 84/223 (37%), Positives = 123/223 (55%), Gaps = 15/223 (6%) Query: 14 VFALVAG----IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +FAL +G +A+ V+ EV ++P++ VL++ +LA G + L W Sbjct: 8 LFALASGGAASWLALGFADQPTVEAAEV-QQSPSQ--EVLVAAQELARGTTLEEPHLRWQ 64 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 A+ E + FI +P+A + L G+L + + G+PIR +KL RG G LSS+LP GK Sbjct: 65 AW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLSSMLPSGK 123 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNID 184 RA + ++ S GG I PNDHVDV+ S + K VLSNIRV+A+D I Sbjct: 124 RAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVLAVDQTIS 183 Query: 185 --SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +D +VG TATLE P Q + AA++ +SL LR++AD Sbjct: 184 EGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVAD 226 >gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1] gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 124 bits (311), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 130/234 (55%), Gaps = 14/234 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLA 56 MK RLM + GV A+ AG++A R+V +P QT E + E + + VL++ D+ Sbjct: 1 MKYARLM---ILGV-AMGAGLLAARMVMTTKAPEVPQTVERV-EPEKQTVAVLVATRDIR 55 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +G + + + W +PE V G I +QP+A + + G + + PI G+PIR ++L+ Sbjct: 56 LGDHLAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRT 115 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--VVLSNI 174 G ++++LPKGKRA + + + GG I P D VDV++ RS + +L N+ Sbjct: 116 DRGFMAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENV 175 Query: 175 RVIAIDHNI--DSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 RV+AID + DE+ L TATLEL+ QA+ + AQ + +SL LRS D Sbjct: 176 RVLAIDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD 229 >gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] Length = 256 Score = 122 bits (306), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 140/261 (53%), Gaps = 22/261 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDL 55 MK R++ + + A+ AG++A R+V S V E VL + D+ Sbjct: 3 MKFARILVLAI----AVAAGVLAFRMVMMSGGSSDQASNAPVPLEQAKG--QVLTAATDI 56 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 +G +T + W +PEE V G + P+A +EL G + + PI KG+PIR E+L++ Sbjct: 57 LLGAKLTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLIN 116 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 G +S++LPKGKRA + + + GG I P D VDV++ R + + T +L NIR Sbjct: 117 TDKGFMSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDTAISET-ILENIR 175 Query: 176 VIAIDHNI--DSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+AID + D++ L TATLELT Q++ + +Q V ++L LRS D S++ Sbjct: 176 VLAIDTTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQD----SAD 231 Query: 233 DSDVWDVQEEGKEIQIIKAGV 253 D++ + + + + ++K G+ Sbjct: 232 DAEPTETR---RGVNLVKYGI 249 >gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] Length = 267 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 76/203 (37%), Positives = 110/203 (54%), Gaps = 10/203 (4%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 Q V+ P VL++ DL G + + WV +P+ +V G + PNA +E Sbjct: 31 QAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSLTKTESPNAQEE 90 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + VR+PI G+PIR ++L+ GL S++L GKRA +D+++++ GG I PND Sbjct: 91 VKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNNTAGGFILPNDR 150 Query: 152 VDVV-------MVRSLSERKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPM 202 VDV+ + L VVLSN+RV+A+ I+ E V+ GSTATLEL P Sbjct: 151 VDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVTGSTATLELDPR 210 Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225 QA+ +V AQ +L L LR I D Sbjct: 211 QAELVVLAQRTGQLVLSLRPITD 233 >gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] Length = 256 Score = 122 bits (305), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 124/233 (53%), Gaps = 14/233 (6%) Query: 1 MKLTRL--MGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLA 56 MK RL +G+ V AG++A RLVS + E V +T + VL++ D+ Sbjct: 1 MKYARLAILGVAVG------AGLLAARLVSTSAPEPEPVAEVTAPTIEKTEVLVASSDIT 54 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 +G + + W ++P E + G + P AM+ L G + R PI G+PIR E+L+ Sbjct: 55 LGSKLGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRT 114 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIR 175 G ++++LPKG RA + + + GG I P D VDV++ ++ E V+ +L N+R Sbjct: 115 DKGFMAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVR 174 Query: 176 VIAIDHNI--DSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V+AID D DE+ V TATLEL Q++ + AQ V +SL LRS D Sbjct: 175 VLAIDAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQD 227 >gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 263 Score = 120 bits (302), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 109/200 (54%), Gaps = 10/200 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + E P++ VL++ +L G VV N L W + E + FI +P+A L G L Sbjct: 35 VQETPSQ--EVLVAAAELKRGAVVEENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSL 91 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + G+PIR +KL G G LSSLLP GKRA + ++ S GG I PNDHVDV+ Sbjct: 92 ALSGFVAGEPIRDDKLAQGGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHT 151 Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210 S K +LSNIRV+A+D + SD ++G TATLE+ P Q A+ AA Sbjct: 152 VARPDASGDAGKVVSRAILSNIRVLAVDQTVSQASDGASVIGKTATLEVDPEQISAVAAA 211 Query: 211 QSVAKLSLVLRSIADLNPSS 230 ++ +SL LR+I D + +S Sbjct: 212 EASGTVSLALRAITDNHEAS 231 >gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] Length = 263 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 77/200 (38%), Positives = 109/200 (54%), Gaps = 10/200 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + E P++ VL++ +L G V+ N L W + E + FI +P+A L G L Sbjct: 35 VQETPSQ--EVLVAAAELKRGAVIEENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSL 91 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + G+PIR +KL G G LSSLLP GKRA + ++ S GG I PNDHVDV+ Sbjct: 92 ALSGFVAGEPIRDDKLAQGGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHT 151 Query: 158 -----RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210 S K +LSNIRV+A+D + SD ++G TATLE+ P Q A+ AA Sbjct: 152 VARPDASGDAGKVVSRAILSNIRVLAVDQTVSQASDGASVIGKTATLEVDPEQISAVAAA 211 Query: 211 QSVAKLSLVLRSIADLNPSS 230 ++ +SL LR+I D + +S Sbjct: 212 EASGTVSLALRAITDNHEAS 231 >gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 120 bits (300), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 75/213 (35%), Positives = 115/213 (53%), Gaps = 4/213 (1%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + + VL++ D++ V+ W +P E V FI +P+AM EL G + R + Sbjct: 45 EVVQVLVAARDMSPSSRVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVTRAAFV 104 Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G+PI KLV G G +++++ G RA + IS S GG I PND VDV++ S + Sbjct: 105 DGEPILPGKLVQPGEAGFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVTTSARD 164 Query: 163 RKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 V++ N+RV+AID +D E V++GSTATLELTP Q ++ + + L LR Sbjct: 165 MGYISEVLVENVRVLAIDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDIVLALR 224 Query: 222 SIADL--NPSSSEDSDVWDVQEEGKEIQIIKAG 252 S+AD P +D + G+E++II+ G Sbjct: 225 SVADREGGPRLPNGADDEAGERRGREVRIIRYG 257 >gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 250 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 76/225 (33%), Positives = 125/225 (55%), Gaps = 16/225 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E+ + E P VL++ +L +G + L W +P+ ++ +I P A++E Sbjct: 35 EQKVVEAPT--TEVLVASSNLQLGQRIGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYT 92 Query: 95 GVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + R +L G+P+ EKLV G G +S+L+ G RA + I+ ++ GG I PND VD Sbjct: 93 GSVARASLLSGEPVTSEKLVTLTGAGFMSALIEPGMRATAISITPETSAGGFILPNDRVD 152 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQ 211 +V L++ + +L NIRV+AID D + E+V VG TATLELTP Q + + A+ Sbjct: 153 IV---DLAKGQ----TILRNIRVLAIDQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAE 205 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 + ++ L LRS+A+ + + SE + V E G +++++ G N Sbjct: 206 AEGRIGLSLRSMAEQDLAGSEKT----VAEGGSVVKVVRYGTAQN 246 >gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1] gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1] Length = 267 Score = 119 bits (299), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 80/222 (36%), Positives = 116/222 (52%), Gaps = 10/222 (4%) Query: 14 VFAL----VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +FAL +A +AM P Q + + VL++ DL G V+ + L W Sbjct: 8 LFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLDESHLRWQ 67 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + V FI +P+A Q L G LVR + G+PIR ++L G G LS LP GK Sbjct: 68 PWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLSGQLPSGK 127 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNI-- 183 RA + ++ SA GG I PND VD++ LS + + + +LSNIRV+A+D N Sbjct: 128 RAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLAVDQNASG 187 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +SD +V TATLE+ P Q + AA++ +SL LR+ +D Sbjct: 188 ESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASD 229 >gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 281 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 74/200 (37%), Positives = 111/200 (55%), Gaps = 18/200 (9%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 I VL + DL +G + L+W +PE V +G + P A++EL G +V++PI K Sbjct: 51 IKVLTASRDLTIGEQIKAEDLQWSIWPELGVAEGQYTETAAPGAVEELTGAVVKMPIYKL 110 Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +PI +++V RG G L L+ + RA ++ IS SA GG I PND VD+++ E+ Sbjct: 111 EPIMPQRVVKRGEAGLLPVLMGEDMRAVSIGISPESASGGFILPNDRVDLILTY---EQT 167 Query: 165 PTVT-----------VVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAA 210 P+ T VL N+RV+AID + +E +G TATLE+ P +A+ + + Sbjct: 168 PSATNGLTSARTVSMTVLQNVRVLAIDQTYAPGEPEESTRIGQTATLEVLPSEAELVALS 227 Query: 211 QSVAKLSLVLRSIADLNPSS 230 QS +LSL LR + DL SS Sbjct: 228 QSKGQLSLALRPLNDLAVSS 247 >gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] Length = 256 Score = 114 bits (285), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 62/190 (32%), Positives = 107/190 (56%), Gaps = 4/190 (2%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL+++ D+ +G ++P+ + W +PE+ V G + P A +E G + R PI G+ Sbjct: 47 QVLVAQRDIPLGAKLSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGE 106 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+R E+L++ G ++++LPKGKRA + + ++ GG I P D VDV++ R S+ Sbjct: 107 PVRPERLINTDKGFMAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAV 165 Query: 167 VTVVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +L NIRV+AID ++ + TATLEL+ Q++ + +Q + ++L LRS Sbjct: 166 SETILENIRVLAIDSTTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSA 225 Query: 224 ADLNPSSSED 233 D + +D Sbjct: 226 QDSADDAEDD 235 >gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] Length = 264 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 76/229 (33%), Positives = 124/229 (54%), Gaps = 13/229 (5%) Query: 9 IVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFIN-VLISKGDLAVGMVVTPNI 65 I V GV A+VAG A ++S P Q ++ P + + VL++ DL G + Sbjct: 6 IAVLGV-AIVAGGGAFMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAALAEAD 64 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSL 124 W+ +P V G + P ++++G VR P+ G+PIR E+L+ GL S++ Sbjct: 65 TSWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPGLMSTM 124 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------TVVLSNIRVIA 178 + G+RA +D+S ++ GG I PNDHVDV+ + ++ + V+L N+RV+A Sbjct: 125 ISAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRNVRVLA 184 Query: 179 ID--HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + + E + G+TATL+L P QA+ ++ AQ +L+L+LR IAD Sbjct: 185 MGPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIAD 233 >gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 263 Score = 113 bits (282), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 79/200 (39%), Positives = 112/200 (56%), Gaps = 10/200 (5%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + E PA+ VL++ +L G + N L W + E + FI + +A EL G L Sbjct: 35 VEEAPAQ--EVLVAAAELKRGAAIEENHLRWQPW-EGEIPPVFISRSSRADATTELKGSL 91 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-- 155 + G+PIR +KL RG G LSSLLP GKRA + ++ S GG I PNDHVDVV Sbjct: 92 ALSDFVAGEPIREDKLAQRGTGYLSSLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHT 151 Query: 156 MVR---SLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAA 210 VR + K +LSNIRV+A+D + +D ++G TATLE+ P Q A+ AA Sbjct: 152 AVRPDAAGDAGKVVSRAILSNIRVLAVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAA 211 Query: 211 QSVAKLSLVLRSIADLNPSS 230 ++ +SL LR+I+D + +S Sbjct: 212 EASGTVSLALRAISDNHEAS 231 >gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] Length = 278 Score = 111 bits (277), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 67/190 (35%), Positives = 110/190 (57%), Gaps = 11/190 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + +L ++ D+ +G ++ W A+P+E + G+I + ++ + + G +VR PI +G Sbjct: 44 VRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPISQG 102 Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------- 157 +PI +LV G+ G ++++L G RA + IS + GG I PND VDV++ Sbjct: 103 EPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEETEG 162 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAK 215 R + R ++ N RV+AID + S D+ V VG TATLELTP QA+A+ A + + Sbjct: 163 RRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVARGE 222 Query: 216 LSLVLRSIAD 225 ++LVLRS+ D Sbjct: 223 IALVLRSLTD 232 >gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] Length = 271 Score = 107 bits (266), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 118/220 (53%), Gaps = 13/220 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL++ D+ +G V+ L W +P+ V +G++ P A++E G VR L G+ Sbjct: 46 DVLVAAIDMPMGQVLRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGE 105 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATM--DISISSAVGGMIKPNDHVDVV-MVRSLSER 163 PIR +KLV +G ++++LP G RA + D +++ GG I PND VDV+ R S Sbjct: 106 PIRAQKLVRPESGFMAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNS 165 Query: 164 KPTVT------VVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK 215 + + +L++IRV+AI + V+ G TATL +TP QA+ L AQ V Sbjct: 166 RANNSDVQLSQTILTDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGA 225 Query: 216 LSLVLRSIADLN--PSSSEDSDVWDVQEEGKEIQIIKAGV 253 L+L LRS+AD P ++ ++ Q + +++ GV Sbjct: 226 LTLSLRSLADAGRPPEATPLAEASAAQMPEPALTVVRFGV 265 >gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] Length = 347 Score = 103 bits (258), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 77/240 (32%), Positives = 128/240 (53%), Gaps = 22/240 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS----PHHVQTEEVITENPAKFINVLISKGDLA 56 M +L+ +V + +FA+ + A L++ P + +V+ + P VL+++ L Sbjct: 1 MDRKKLILLVGALIFAIATSLAARALLTGGSTPQAIAAAKVL-DGP----KVLVAQRALP 55 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 VG ++T + + + A+P++ V D + + MQ+L G +VR PI G PI LV Sbjct: 56 VGTIITADAVSYQAWPKDLVQDAYF--LQDKTDMQKLLGTVVRNPITAGQPITTGSLVAP 113 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVV 170 G+ G L++ L G RA T+ +S + V G + P DHVD+++ +S+ S+ + Sbjct: 114 GDRGFLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETI 173 Query: 171 LSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 L N+RV+A D + +D RV S T+E TP A+ L A+S+ +SL LRSIAD Sbjct: 174 LKNLRVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIAD 233 >gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] Length = 296 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 138/292 (47%), Gaps = 44/292 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M R+M ++++ V A+ ++ +++S P VL++K DLA+G Sbjct: 1 MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFI--------------------DDVHQP-----NAMQEL 93 +T + W +P + + FI DV + + + Sbjct: 61 QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G +VR PIL G+PI K+V G GG LS +L GKRA + ++ +AVGG + P D V Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180 Query: 153 DVVMVR---------SLSERKPTVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTP 201 DV+ R S + ++ N+RV+A+D + D + +V +TATLE+ P Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADL-NPSS----SEDSDVWDVQEEGKEIQI 248 ++A+AL A++ ++L LR+ DL PS S+++ V + G+ I Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSGLAVRSQEASVVRINRGGETSNI 292 >gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 342 Score = 102 bits (253), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 73/236 (30%), Positives = 126/236 (53%), Gaps = 14/236 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +LM +V + + A+ A L + + E + P VL+++ L VG + Sbjct: 1 MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTG-PKVLVAQRALPVGTI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + + A+P++ V D + V MQ+L G +VR PI G+P+ LV G+ G Sbjct: 60 ITADSINFQAWPKDMVQDAYF--VEGEADMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNI 174 L++ L G RA T+ +S + V G + P DH+D+V+ +++ + + +L N+ Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177 Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 RV+A D + + ++ RV ST TLE+TP A+ + AQ++ +SL LRS+AD Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLAD 233 >gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] Length = 365 Score = 102 bits (253), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 68/189 (35%), Positives = 107/189 (56%), Gaps = 12/189 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ L G ++T + + + +PEE V D + + + M +L G +VR P+ G+ Sbjct: 45 KVLVANRALPAGTIITADAMGYQMWPEELVQDAYF--IEGESDMSQLLGTVVRFPVTAGE 102 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERK 164 P+ LV G+ G L++ L G RA T+ +S + V G + P D VDVV+ +++S E + Sbjct: 103 PVTQGSLVSPGDRGFLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGR 162 Query: 165 P--TVTVVLSNIRVIAIDH---NIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKL 216 P VL N+RV+A D + +DE V T TLE+TP A+ + AQ++ +L Sbjct: 163 PLNAAETVLRNLRVLATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQL 222 Query: 217 SLVLRSIAD 225 +LVLRSIAD Sbjct: 223 TLVLRSIAD 231 >gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15] gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] Length = 297 Score = 100 bits (248), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 133/266 (50%), Gaps = 39/266 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI-----TENPAK-FINVLISKGD 54 M RL+ ++++ V A+ ++ R + + ++ P K VL++K D Sbjct: 1 MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90 L VG + + W A+P +++ FI + P + Sbjct: 61 LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149 + ++G +VR PIL G+PI K+V G GG LS +L GKRA ++ ++ +AVGG I P Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180 Query: 150 DHVDVVMVR---SLSERKPTVTV---VLSNIRVIAIDHNI--DSDERVLVGSTATLELTP 201 D VDV+ R + ++ V + VL NIRV+A+D + D + +V +TATLE+ P Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLN 227 ++A+AL A++ ++L LR+ D+ Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMG 266 >gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 264 Score = 99.8 bits (247), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 115/221 (52%), Gaps = 22/221 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL+ +LA G +T + W +PE + ++ +P A+ E G +R + G+ Sbjct: 43 DVLVVSTELAQGERLTKENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGE 102 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-----MVRSLS 161 P++ KL G L+++LP GKRA + IS + GG I P+D VDV+ + Sbjct: 103 PVQDGKLAGLNAGFLATVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEG 162 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDER--------VLVGSTATLELTPMQAKALVAAQSV 213 R+ +L N+ V+AID +D ++ V++G TATLEL QA+ L AA++ Sbjct: 163 AREHRSRTILKNVPVLAIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAA 222 Query: 214 AKLSLVLRSIADLN--PSSSEDSDVWDVQEEGKEIQIIKAG 252 LSL LRS AD N P+++ +E + +++I+ G Sbjct: 223 GTLSLSLRSAADSNEVPTAA-------TEERIQTVRVIRGG 256 >gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] Length = 310 Score = 99.4 bits (246), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 59/154 (38%), Positives = 93/154 (60%), Gaps = 9/154 (5%) Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISIS 139 + +++ P A + G +VR PIL G+P+ K+V G+ G +++ L G RA + +++ Sbjct: 119 VAELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVE 178 Query: 140 SAVGGMIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDS--DERVLV 191 +A GG I P D VDV++ R + K + V+ N++V+AID + + DE+ +V Sbjct: 179 TAAGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVV 238 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 G+TATLELT A+ L A+S +LSLVLRS AD Sbjct: 239 GATATLELTGRDAEVLALAKSEGELSLVLRSYAD 272 >gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] Length = 310 Score = 97.4 bits (241), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 84/302 (27%), Positives = 128/302 (42%), Gaps = 50/302 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPAKFINVLISKGDLAVG 58 MK R+ I ++ V A+ + + SP VL++ DLA G Sbjct: 1 MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------------- 87 + LEW +P + V FI D P Sbjct: 61 QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120 Query: 88 ------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140 A + G +VR PIL G+PI K+V G+ G +++ L G RA + +S+ S Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180 Query: 141 AVGGMIKPNDHVDVVMV--------RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVL 190 A GG I P D VDV++ K +V+ N++V+AID + + D++ + Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG+TATLE+ P A+ + A++ LSLVLRS AD + S S E I++ + Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300 Query: 251 AG 252 G Sbjct: 301 GG 302 >gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 287 Score = 96.3 bits (238), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 103/180 (57%), Gaps = 4/180 (2%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ L G ++ P+ + W A+P + G++ A ++ G +VR + G Sbjct: 51 QVLVAAQALPPGTILKPSHVRWQAWPADAPTAGYLTSAASGPA--QIAGAVVRGELQPGQ 108 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 P+ +V G+ L+++L G RA T+++S +S V G I P D VD+V+ R + + + Sbjct: 109 PLTTTGVVQPGDRSFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRH 168 Query: 166 TVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL+++RV+ ID + ++++ V+V TATLE+TP QA+ + + KLSL LRS+A Sbjct: 169 VSETVLTDVRVVGIDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228 >gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503] gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503] Length = 253 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 62/186 (33%), Positives = 98/186 (52%), Gaps = 4/186 (2%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+ S D+ G +++ +++WV +P NV + FI Q + + L R+ I P Sbjct: 49 VMFSAKDIPQGAILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQP 107 Query: 108 IRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 I V G+ G L+S+L G RA T + + GG I P D VD+ + + Sbjct: 108 IYGVNTVAHGDRGMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQME 167 Query: 167 VTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + +L NIRV+AID N+ ++ L GST T EL+P Q + + A+ +L+LVLRS+ Sbjct: 168 TSAILRNIRVLAIDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVY 227 Query: 225 DLNPSS 230 DL+P + Sbjct: 228 DLSPET 233 >gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum JL354] Length = 353 Score = 95.5 bits (236), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 67/185 (36%), Positives = 105/185 (56%), Gaps = 9/185 (4%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL+++ L VG ++T + + + A+P+E V D + D + +L G +VR I G+ Sbjct: 48 RVLVAQRSLPVGTIITQDAISYQAWPQELVRDAYFIDGEA--DVSKLLGTVVRYQITAGE 105 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 P+ LV G+ G L++ L G RA T+ ++ ++V G + P D VD++M K Sbjct: 106 PVTQGALVAPGDRGFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHETEGVKA 165 Query: 166 TVTVVLSNIRVIAIDHNIDSD----ERVLVG-STATLELTPMQAKALVAAQSVAKLSLVL 220 T T+ L N+RV+A D + + + V+ G ST TLE+TP A+ + AQ+V LSL L Sbjct: 166 TETI-LRNLRVLATDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSL 224 Query: 221 RSIAD 225 RSIAD Sbjct: 225 RSIAD 229 >gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] Length = 371 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 73/229 (31%), Positives = 121/229 (52%), Gaps = 19/229 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL+++ L VG ++T + L + +PEE V D + + + + +L G +VR P+ G+ Sbjct: 46 KVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF--IEGESDITQLLGTVVRHPVTAGE 103 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----S 161 P+ LV G+ G L++ L G RA T+ +S ++ V G + P D VD+++ +++ + Sbjct: 104 PLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANTGVAGFVFPGDRVDLMLTQAVKGEET 163 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAK 215 + K T T+ L N+RV+A D + V T TLE+TP A+ + AQ++ Sbjct: 164 DLKATETI-LRNLRVLATDQTTEQTTNEAGKTVVRAFRTVTLEVTPKIAEKVAVAQTLGT 222 Query: 216 LSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 LSL LRSIAD +S D + D +E +II+A + DG Sbjct: 223 LSLALRSIADNQAELERAIASGDVKIPDGASPEEEERIIQAAMNRPNDG 271 >gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] Length = 361 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/188 (32%), Positives = 101/188 (53%), Gaps = 11/188 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL+++ L G ++T + + + +PEE V D + D + +L G +VR P+ G+ Sbjct: 47 KVLVAQRALPTGTIITADAIGYQLWPEELVQDAYFLDGE--ADVSKLIGTVVRHPVTAGE 104 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 P+ LV G+ G L++ L G RA T+ + S V G + P D VD+V+ +++S Sbjct: 105 PVTQGSLVSPGDRGFLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQ 164 Query: 166 TVT---VVLSNIRVIAIDHN-----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + +L N+RV+A D + +D +V T TLE+TP A+ + AQ++ LS Sbjct: 165 ALKASETILRNLRVLATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLS 224 Query: 218 LVLRSIAD 225 L LR +AD Sbjct: 225 LALRPLAD 232 >gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] Length = 305 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 62/180 (34%), Positives = 93/180 (51%), Gaps = 14/180 (7%) Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145 P A + G +VR PIL G+PI K+V G+ G L++ L G RA + +++ SA GG Sbjct: 118 PGAKSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGF 177 Query: 146 IKPNDHVDVVMV-----------RSLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVG 192 I P D VDVV+ + K + V+ N++V+AID + + D + +VG Sbjct: 178 ILPGDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVG 237 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 +TATLE+ P A L A+S +LSL LRS AD S V + +++ + G Sbjct: 238 ATATLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGG 297 >gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] Length = 284 Score = 90.1 bits (222), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 71/244 (29%), Positives = 130/244 (53%), Gaps = 28/244 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ +++ A +AG+ A+ S Q ++ + V+++ D+ +G Sbjct: 1 MKNLRILSMLL---IATIAGLAAVVFASRWLSQ------QSSSGITKVVVAAADIDLGQR 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P+ ++ V +P ++ G I D H LDG +VR +++G+P+ KL +G G Sbjct: 52 LSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTAG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSLSERKPT---------VT 168 GLS+++ GKRA T+ ++ V G P +VD+++ ++ + K T Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSISK 165 Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D + Sbjct: 166 IVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDPH 225 Query: 228 PSSS 231 P+ + Sbjct: 226 PADT 229 >gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 284 Score = 89.7 bits (221), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 73/245 (29%), Positives = 132/245 (53%), Gaps = 30/245 (12%) Query: 1 MKLTRLMG-IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R +S Q+ IT+ V+++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAVVFASRWLSQ---QSNSGITK-------VVVAAADIDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++P+ ++ V +P ++ G I D H LDG +VR +++G+P+ KL +G Sbjct: 51 RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSLSERKPT---------V 167 GGLS+++ GKRA T+ ++ V G P +VD+++ ++ + K T Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224 Query: 227 NPSSS 231 +P+ + Sbjct: 225 HPADT 229 >gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 281 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 14/192 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 39 VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSL 160 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ + Sbjct: 93 VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGKM 152 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSLV Sbjct: 153 EDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSLV 212 Query: 220 LRSIADLNPSSS 231 LR+ D +P+S+ Sbjct: 213 LRNQIDKDPTST 224 >gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] Length = 281 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 14/192 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 39 VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------L 160 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 93 VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGKT 152 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSLV Sbjct: 153 EESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSLV 212 Query: 220 LRSIADLNPSSS 231 LR+ D +P+S+ Sbjct: 213 LRNQIDKDPTST 224 >gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] Length = 281 Score = 89.4 bits (220), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 14/192 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 39 VVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGEA 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------L 160 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 93 VLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGKT 152 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSLV Sbjct: 153 EESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSLV 212 Query: 220 LRSIADLNPSSS 231 LR+ D +P+S+ Sbjct: 213 LRNQIDKDPTST 224 >gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48] gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48] Length = 304 Score = 89.0 bits (219), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/240 (29%), Positives = 116/240 (48%), Gaps = 45/240 (18%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD---------- 83 +++V E P + VL++ L VG + L W A+PE+ + + + D Sbjct: 38 SQKVAVEAPT--VKVLVAARHLKVGERIAEADLAWKAWPEDGITESYFTDKPVTPVAPAE 95 Query: 84 --VHQPNAMQE----------------------LDGVL---VRVPILKGDPIRLEKLVDR 116 + A++E +D VL VR +L +PI K+V Sbjct: 96 AKSAEDKALEEKVKNGAAQVADVADKTLNPTRGMDAVLGGVVREEMLANEPIVARKVVRA 155 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLS 172 GG ++ +L G RA + +++ S GG I P D VD+V+ L T V VL Sbjct: 156 DAGGFMAVMLAPGMRAMAVPVTVESTAGGFILPGDRVDIVVSTELQSNGQTTHVAKPVLR 215 Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N++V+A+D ++ SD+ ++G+TATLE+ P + +AL A++ LSL+LRS AD+ S Sbjct: 216 NVKVLAVDQTVEAKSDQPSVIGATATLEVRPEEGEALAQAKAQGPLSLMLRSYADVGGPS 275 >gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] Length = 261 Score = 89.0 bits (219), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/225 (30%), Positives = 118/225 (52%), Gaps = 18/225 (8%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 IV+S + L A ++A R + I V+++ D+ VG +TP++L+ Sbjct: 2 IVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQP 51 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPK 127 +P V +G D LD +V+V +++G+P+ KL +G GGLS ++ + Sbjct: 52 SDWPRATVPEGSFQDAKL------LDTRVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIAE 105 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 GKRA T+ ++ + G P ++VD+++ KP +VL I V+A+ ++ DE Sbjct: 106 GKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRDE 165 Query: 188 RVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TA TLE+TP +A+ L A+S+ LSLVLR+ D +P ++ Sbjct: 166 TKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTT 210 >gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756] gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756] Length = 293 Score = 88.2 bits (217), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/219 (32%), Positives = 108/219 (49%), Gaps = 33/219 (15%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP----------------- 87 VL++K DLA+G +T ++W A+P ++V FI + P Sbjct: 48 MTQVLVAKRDLAIGARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAV 107 Query: 88 -------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISIS 139 + + LDG +VR PIL G+PI K+V G GG LS +L GKRA + +S Sbjct: 108 TGQMIGGDPAKALDGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSAD 167 Query: 140 SAVGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSNIRVIAIDHNI--DSDERVLV 191 + GG I P D VDV+ R + R VL N+RV+A+D D D + + Sbjct: 168 TTAGGFILPGDRVDVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQI 227 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++ATLE+ +A+AL AA++ ++L LR+ D S Sbjct: 228 ATSATLEVGAAEAEALAAAKAGGPVTLALRAYTDAGAPS 266 >gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 309 Score = 87.0 bits (214), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 59/195 (30%), Positives = 107/195 (54%), Gaps = 11/195 (5%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K + V+++ D+A+G ++ + L+ V +PE+++ G + +Q + +V VP+ Sbjct: 35 KTLRVVVASRDMAIGTLLKKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMN 88 Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 +P+ KL D G++S + KG RA ++ ++ + V G+I+P HVDV+ R S Sbjct: 89 TNEPVLQGKLSDTTTVEGVASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSM 148 Query: 163 RKPTVTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + T + +L N+RVI+ +I + D R T TL LTP +A+ L A++ ++ L Sbjct: 149 AEATTSTILQNVRVISTGRSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGL 208 Query: 219 VLRSIADLNPSSSED 233 LR+ DLN +S + Sbjct: 209 SLRNPLDLNRDASTE 223 >gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 266 Score = 86.3 bits (212), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 65/206 (31%), Positives = 109/206 (52%), Gaps = 17/206 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF---IDDVHQPNAMQELDGVLVRVPIL 103 V+I+ + G + N L+ V +P V +G DDV G + RV ++ Sbjct: 38 TVVIAARAIDAGTAIAENQLKAVQWPRSTVPEGASARTDDVA---------GRIARVSMI 88 Query: 104 KGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G+P+ KL +GGLSS++P GKRA T+ ++ AV G P +VD+++ +E Sbjct: 89 AGEPVLPGKLAPTNASGGLSSIIPDGKRAITVKVNEVIAVAGFALPGSYVDILVSGRDAE 148 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 R+P VLS I+V+A+ ++ ++ V + TLELTP +++ L A+S+ LSLVLR Sbjct: 149 RQPFSRTVLSRIKVLAVAQETTAEPDKPKVVNAVTLELTPHESETLDLARSIGVLSLVLR 208 Query: 222 S---IADLNPSSSEDSDVWDVQEEGK 244 + ++N + +D+ Q G+ Sbjct: 209 NELDTGEINSAGVRLADIIQAQSAGR 234 >gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49] Length = 277 Score = 85.5 bits (210), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 122/231 (52%), Gaps = 21/231 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK++R + ++V A++AG A+ S VQT + + ++ DL +G Sbjct: 1 MKISRAVMMLV---IAMIAGFAAVVFASRWLVQTST------SSVTPIAVAATDLNLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + PN + V++P +V G D +ELDG +VR + +G+P+ KL G G Sbjct: 52 LGPNQVHTVSWPTGSVPPGAFTD------PKELDGRVVRTSLARGEPVIESKLAPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIR 175 GLS+++ +G RA T+ ++ V G P ++VDV++ + S+ + +VL +I Sbjct: 106 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHIL 165 Query: 176 VIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQID 216 >gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] Length = 298 Score = 84.7 bits (208), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 75/237 (31%), Positives = 128/237 (54%), Gaps = 23/237 (9%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + IVVS L A ++A R +S ++ T +K V+++ ++ +G +TP + Sbjct: 7 FLMIVVSVGIGLGAVVLASRWIS------QQAATVASSK---VVVAAINIDLGTPLTPQM 57 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSL 124 L+ +P +V G DD+ + LD +V+ +L+G+P+ KL G GGLS++ Sbjct: 58 LKVADWPRGSVPVGATDDI------KTLDARVVKTSLLQGEPVLESKLAPLGATGGLSAV 111 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSNIRVIA 178 + +G RA T+ ++ V G P ++VD+V+ V++ + K +VL +I V+A Sbjct: 112 IAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLEHIMVLA 171 Query: 179 IDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 + + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D N ++E S Sbjct: 172 VAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTTEGS 228 >gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1] gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1] Length = 332 Score = 84.0 bits (206), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 14/183 (7%) Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 L VG ++ P + +P E V + + + + L+G +VR I G P+ LV Sbjct: 55 LPVGTIIGPESFRYQRWPAELVSKTYF--IKGESDLAALNGSVVRYAITAGAPVTQGALV 112 Query: 115 DRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKP--TVT 168 G+ G L++ L G RA T+ +S S V G + P D VD+++ + + + P Sbjct: 113 KPGDRGFLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAE 172 Query: 169 VVLSNIRVIAIDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAKLSLVLRS 222 ++ NIRV+A D +D + + +V +T+ TLE TP A+ + AQ++ +LSL LRS Sbjct: 173 TIIRNIRVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRS 232 Query: 223 IAD 225 IAD Sbjct: 233 IAD 235 >gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] Length = 279 Score = 83.6 bits (205), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 115/218 (52%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A+VAG+ A+ S VQT + + +V ++ DL +G + PN + V++P Sbjct: 11 VVAMVAGLAAVVFASRWLVQT------STSSVTSVAVATTDLNLGEPLGPNQIHMVSWPA 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D + L+G +VR + +G+P+ KL G GGLS+++ G RA Sbjct: 65 GSVPTGAFTDT------KTLEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 279 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A+VAG+ A+ S VQT + +V ++ DL +G + PN + V++P Sbjct: 11 VVAMVAGLAAVVFASRWLVQTST------SSVTSVAVASTDLNLGEPLGPNQIHMVSWPA 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D + L+G +VR + +G+P+ KL G GGLS+++ G RA Sbjct: 65 GSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] Length = 329 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 64/219 (29%), Positives = 107/219 (48%), Gaps = 19/219 (8%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 ++ P VL++ L VG ++ L++ +P+E V + + + +L G Sbjct: 40 IVAPPPETGPEVLVATRALPVGTIIDATALKFQPWPKEMVGGAYY--LKGQADLAKLQGT 97 Query: 97 LVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 +VR I G P+ +V G+ G L++ L G RA T+ +S + V G + P D +D+V Sbjct: 98 VVRYAITAGQPLTQGAVVQPGDRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMV 157 Query: 156 MVRSLSERK--PTVTV---VLSNIRVIAIDHNIDSDE------RVLVGSTATLELTPMQA 204 + + ++ P + V +L N+RV+A D DS + +T T+E TP A Sbjct: 158 LTQDVAGGGDGPPLKVSETILRNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMA 217 Query: 205 KALVAAQSVAKLSLVLRSIADL-----NPSSSEDSDVWD 238 + L AQ+V LSL LR++AD NP++ V D Sbjct: 218 EQLAVAQTVGTLSLSLRALADRPDDLQNPAAVNAGPVAD 256 >gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] Length = 308 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 117/217 (53%), Gaps = 14/217 (6%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 H +Q E +T+ + ++++ D+ +G ++ L+ ++P++++ G DV Sbjct: 27 HFLQKEMDMTKA-VQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV----- 80 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGM 145 + L G + PI GD + +KL + G+G ++ ++P G RA T+ ++ + V G Sbjct: 81 -KSLVGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGF 139 Query: 146 IKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPM 202 I PND +DVV+ L S+++ ++L N+ V+A + E + +V T TL+LTP Sbjct: 140 ITPNDRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPE 199 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 A+ LV A S L L+LR+IAD P +++ + + V Sbjct: 200 DAEKLVLAGSKGSLQLLLRNIADSAPLNAKGATIAKV 236 >gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 269 Score = 83.2 bits (204), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 65/221 (29%), Positives = 115/221 (52%), Gaps = 21/221 (9%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + A +AG+ A+ S +++++ V+++ D+ +G + P+ L+ +P Sbjct: 3 LIATLAGLTAVVFAS------RWMVSQSSNATTRVVVAAADINLGQRIGPDYLKLTDWPS 56 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D+ Q+LDG +++ +L+G+PI KL G GGLS+++ +GKRA Sbjct: 57 NSVPPGSYSDI------QKLDGRVLKESLLRGEPILDAKLTPVGTLGGLSAVIGEGKRAI 110 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-------VVLSNIRVIAIDHNIDS 185 T+ ++ V G P ++VD+++ R P T +VL I V+A+ + Sbjct: 111 TVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAVAQEVGR 170 Query: 186 DE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 DE + V TLE+ P QA+ + A+S+ LSLVLR+ D Sbjct: 171 DETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQID 211 >gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] Length = 345 Score = 82.4 bits (202), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 21/195 (10%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 +L++ L VG +V P+ + +P++ V + + V + + L G +VR PI G P Sbjct: 48 ILVATRQLPVGTIVGPDSFRFQPWPKDLVENAYF--VKEKTDVNTLVGTVVRHPITAGQP 105 Query: 108 IRLEKLV---DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---- 160 + LV DRG L++ L G RA T+ +S V G + P D VDVV+ +++ Sbjct: 106 LTQGALVHPNDRGF--LAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEE 163 Query: 161 SERKP-----TVTVVLSNIRVIAIDHNIDSDER-----VLVGSTATLELTPMQAKALVAA 210 P T ++ NIRV+A D D+++ V + TLE TP A+ + A Sbjct: 164 GSTYPDDQIFTAETIVRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVA 223 Query: 211 QSVAKLSLVLRSIAD 225 Q + +LSL LR +A+ Sbjct: 224 QGMGRLSLALRPLAE 238 >gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] Length = 284 Score = 82.0 bits (201), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 28/243 (11%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ TR L+ I V+ V A A I+A R +S + A V ++ D+++G Sbjct: 1 MRNTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGA 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118 ++P ++ V +P + G I D Q L+ + R I +G+P+ KL G Sbjct: 51 RLSPEMVRMVDWPASAMPPGAITDAKQ------LETRVTRTSIQRGEPVMEGKLAPPGTQ 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-------RKPTVT-VV 170 GGLS+++ +GKRA T+ ++ V G P + VD+ +V + E + T++ +V Sbjct: 105 GGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDI-LVNTQDEPGKGGAGKDQTISKIV 163 Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 L I V+AI DE + V + TLELTP QA+ L A+SV LSLVLR+ D NP Sbjct: 164 LERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPV 223 Query: 230 SSE 232 +++ Sbjct: 224 NTK 226 >gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510] gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510] Length = 288 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 57/189 (30%), Positives = 99/189 (52%), Gaps = 13/189 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + ++ DL G + P + W AFPE + + V + + L G +VR + G+ Sbjct: 42 RIAVAAADLPAGSFLQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGE 99 Query: 107 PIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--- 162 I ++L+ R G L+++L G RAA++ ++ S G+I P DHVD+++ + ++ Sbjct: 100 IISRDRLLSPRERGFLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGA 159 Query: 163 -RKPTVTVVLSNIRVIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAK 215 R+ +L N+RV+A+D D + V T TLE+T QA+ + A ++ K Sbjct: 160 ARRLATETILDNLRVLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGK 219 Query: 216 LSLVLRSIA 224 L+L LRS+A Sbjct: 220 LTLSLRSLA 228 >gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 307 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 69/213 (32%), Positives = 109/213 (51%), Gaps = 13/213 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 ++ ++ + E + V+++ L G VT + V +P +V G D Sbjct: 22 FIANSYLSSAEKAPQADGGMAKVVVATVSLPFGSAVTAEKIRTVDWPANSVPPGAFRDPI 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAV 142 Q ++ + G +V I G+PI KL G GG +S++L RA + +S +A Sbjct: 82 QLTSLGK--GRVVLRQIEPGEPILASKL--SGEGGRATMSAVLAPEMRAVAVRVSDVAAA 137 Query: 143 GGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATL 197 GG + P D VDV + R+L++ + V+L RVIAID N D+ + VG TATL Sbjct: 138 GGFVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVIAIDQNANDTSKDPAVGKTATL 197 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADL-NPS 229 E+ + A+ LV AQ V +L+LVLR++ D NP+ Sbjct: 198 EVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPA 230 >gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] Length = 284 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 106/202 (52%), Gaps = 19/202 (9%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 ++ ++ + V ++ D+ +G ++P +++ V +P ++ G + D H LDG Sbjct: 28 LMQQSASGITKVAVASADVELGQRLSPEMVKLVDWPAASLPPGVVTDAH------ALDGR 81 Query: 97 LVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 +V+ + +G+P+ KL G GGLS+++ GKRA T+ ++ V G P +VDV+ Sbjct: 82 VVKASLTRGEPVLESKLTPVGTAGGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVI 141 Query: 156 MVRSLSERKPTVT-----------VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203 + E++ +VL I V+A+ + D+ + V + TLE+TP Q Sbjct: 142 VNTMEDEKQAKAAGNDQKEHSISKIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQ 201 Query: 204 AKALVAAQSVAKLSLVLRSIAD 225 A+ L A+SV LSLVLR+ AD Sbjct: 202 AEKLDLARSVGTLSLVLRNQAD 223 >gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4] gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4] Length = 281 Score = 82.0 bits (201), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 113/218 (51%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A+VAG+ A+ S + T +V ++ DL +G + PN + V++P Sbjct: 11 VVAMVAGLAAVVFASRWLMNTSN------GSVTSVAVATTDLNLGEPLGPNQIHMVSWPA 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D +EL+G +VR + +G+P+ KL G GGLS+++ G RA Sbjct: 65 GSVPTGAFTDT------KELEGRVVRTSLARGEPVIESKLAPVGTKGGLSAVIADGSRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 279 Score = 81.6 bits (200), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 69/218 (31%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A+VAG+ A+ S VQT + + V ++ DL +G + PN + V++P Sbjct: 11 VVAMVAGLAAVVFASHWLVQT------STSSVTPVAVATTDLNLGEPLGPNQIHMVSWPS 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D + L+G +VR + +G+P+ KL G GGLS+++ G RA Sbjct: 65 GSVPTGAFTDT------KGLEGRVVRTSLSRGEPVIESKLAPVGTKGGLSAVIADGSRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu] Length = 280 Score = 81.3 bits (199), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 121/235 (51%), Gaps = 29/235 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TR + +++ A+VAG+ A+ S VQT + V ++ DL +G Sbjct: 1 MKNTRAITMLI---IAMVAGLAAVAFASRWLVQTST------SAVTQVAVATTDLNLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + +++P +V G D + L+G +VR + +G+P+ KL G G Sbjct: 52 IGPAQIRTISWPTGSVPPGAFTDT------KSLEGRVVRTSLARGEPVLEAKLAPLGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------VVL 171 GLS+++ G RA T+ ++ V G P ++VDV++ + ++P T +VL Sbjct: 106 GLSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIV----NTQEPGKTDNQQSISKIVL 161 Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +I V+A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ D Sbjct: 162 EHILVLAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVD 216 >gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 269 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 63/221 (28%), Positives = 114/221 (51%), Gaps = 21/221 (9%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + A +AG+ A+ S +++++ V+++ D+ +G + P+ L+ +P Sbjct: 3 LIATLAGLTAVVFAS------RWMVSQSSNATTKVVVAATDINLGQRIGPDFLKLTEWPS 56 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D+ Q+LDG +++ +L G+P+ KL G GGLS+++ +GKRA Sbjct: 57 NSVPPGSFTDI------QKLDGRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIGEGKRAI 110 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-------TVVLSNIRVIAIDHNIDS 185 T+ ++ V G P ++VD+++ R P +VL I V+A+ + Sbjct: 111 TVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAVAQEVGR 170 Query: 186 DE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 DE + V TLE++P QA+ + A+S+ LSLVLR+ D Sbjct: 171 DETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQID 211 >gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] Length = 278 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 73/233 (31%), Positives = 122/233 (52%), Gaps = 23/233 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R IV+ G AL+AG+ A+ S +QT + V ++ ++++G Sbjct: 1 MKTSR--AIVMLG-MALLAGLAAVGFASRWLLQTSS------SALTPVAVATAEVSLGQP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + ++ V +P +V G D P A LDG +VR + G+P+ KL +G G Sbjct: 52 LNSTMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRASLEPGEPVIESKLAPQGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173 GLS+++ +GKRA T+ ++ V G P ++VDV++ ++ ++ +VL Sbjct: 106 GLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLEK 165 Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 166 ILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQID 218 >gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 279 Score = 80.9 bits (198), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/218 (30%), Positives = 114/218 (52%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A++AG+ A+ S +QT + +V ++ DL +G + PN + V++P Sbjct: 11 VVAMIAGLAAVVFASHWLMQT------STNSVTSVAVATTDLNLGEPLGPNQIHMVSWPS 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D + L+G +VR + +G+P+ KL G GGLS+++ G RA Sbjct: 65 GSVPTGAFTDT------KALEGRVVRTSLSRGEPVIESKLAPVGTKGGLSAVIADGSRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 119 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 178 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 179 APKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] Length = 283 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 60/193 (31%), Positives = 102/193 (52%), Gaps = 18/193 (9%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 + ++ D+ +G ++P ++ V +P ++ G I+D H LDG +VR + + Sbjct: 36 ITKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPH------ALDGRVVRASLTR 89 Query: 105 GDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G+P+ KL G GGLS+++ +GKRA T+ ++ V G P +VD+++ R Sbjct: 90 GEPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQDSR 149 Query: 164 --KPTV--------TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQS 212 KP +VL I V+A+ ++ D+ + V + TLE+TP QA+ + A+S Sbjct: 150 EAKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPEQAEKIDLARS 209 Query: 213 VAKLSLVLRSIAD 225 V LSLVLR+ D Sbjct: 210 VGNLSLVLRNQVD 222 >gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] Length = 323 Score = 80.5 bits (197), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 115/218 (52%), Gaps = 18/218 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 V A+VAG+ A+ S VQT + + +V ++ DL +G + N + V++P Sbjct: 53 VVAMVAGLAAVVFASHWLVQT------STSAVTSVAVAATDLNLGEPLGANQIHMVSWPS 106 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 +V G D + L+G +VR + +G+P+ KL G GGLS+++ +G RA Sbjct: 107 GSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPIGTKGGLSAVIAEGSRAI 160 Query: 133 TMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER 188 T+ ++ V G P ++VDV++ + ++ + +VL +I V+A+ + D+ Sbjct: 161 TVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHILVLAVAQQVSRDDT 220 Query: 189 V-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 221 APKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQID 258 >gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 295 Score = 79.7 bits (195), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 14/218 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A V+ ++ E + V+++ L G VT + V +P +V G Sbjct: 4 LAAVFVANSYLSRAEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPANSVPPGAF 63 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISI 138 D Q ++ + G +V I G+PI KL G GG +S++L RA + +S Sbjct: 64 RDPIQLTSLGK--GRVVLRQIEPGEPILASKL--SGEGGRATMSAVLAPEMRAVAVRVSD 119 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVG 192 +A GG + P D VDV + R+L + + V+L RVIAID N D+ + VG Sbjct: 120 VAAAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSKDPAVG 179 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADL-NPS 229 TATLE+ + A+ LV AQ V +L+LVLR++ D NP+ Sbjct: 180 KTATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPA 217 >gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CMR15] Length = 295 Score = 79.3 bits (194), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 31/244 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ +++ A +AG+ AM S +Q + + V ++ D+ +G Sbjct: 8 MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P + V +P ++ G I D H +DG + R + G+P+ KL G G Sbjct: 59 LSPEFIRLVDWPAASLPPGAISDEHA------IDGRVTRTSLSPGEPVLESKLTPVGTKG 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165 GLS+++ GKRA T+ ++ V G P +VD+++ ++ E Sbjct: 113 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEHS 172 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 173 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 232 Query: 225 DLNP 228 D P Sbjct: 233 DPRP 236 >gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia solanacearum GMI1000] Length = 288 Score = 79.3 bits (194), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 69/244 (28%), Positives = 118/244 (48%), Gaps = 31/244 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ +++ A +AG+ AM S +Q + + V ++ D+ +G Sbjct: 1 MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P + V +P ++ G I D H +DG + R + G+P+ KL G G Sbjct: 52 LSPEFIRLVDWPAASLPPGAISDEHA------IDGRVTRTSLSPGEPVLESKLTPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--------------VRSLSERKP 165 GLS+++ GKRA T+ ++ V G P +VD+++ ++ E Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEHS 165 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 166 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 225 Query: 225 DLNP 228 D P Sbjct: 226 DPRP 229 >gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] Length = 291 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 105/191 (54%), Gaps = 19/191 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV---PIL 103 ++++ D+ +G +TP L+ ++P++++ P + ++++ V RV PI Sbjct: 43 RIVVAAADIPIGTAITPAQLKVTSWPKDSI---------PPGSARDIEAVANRVAIRPIT 93 Query: 104 KGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 GD + KL R G G ++ ++P+G RA T+ ++ + V G + P+D VDV++ Sbjct: 94 GGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPSDRVDVIVTTP 153 Query: 160 L--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKL 216 L +E++ +VL N+ ++A D E + +V T TL+L P A+ LV + S L Sbjct: 154 LPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEKLVLSASKGSL 213 Query: 217 SLVLRSIADLN 227 L+LR+I+D++ Sbjct: 214 QLLLRNISDIS 224 >gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] Length = 263 Score = 79.0 bits (193), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 28/238 (11%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 I ++ V +A IA R+ VQT+ V+I + G V+ P+ ++ Sbjct: 7 IAIALVLGAMAAYIAARM---STVQTD-------GSEAKVVIVAMPIDAGKVIAPDQIKA 56 Query: 69 VAFPEE----NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSS 123 V +P N F D V G + RV ++ G+P+ +KL +G GGL+S Sbjct: 57 VQWPSSAVPLNAFARTADVV----------GRVARVSMIAGEPVLPDKLALKGAKGGLAS 106 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH-- 181 LP+GKRA T+ ++ AV G P +VD+++ R+ VLS ++V+A+D Sbjct: 107 TLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQVT 166 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D D+ LV + T+EL+P +A+ L A+++ LSLVLR+ D +SE + D+ Sbjct: 167 TGDPDKPKLVNAV-TVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223 >gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 278 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 101/189 (53%), Gaps = 14/189 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ ++++G + N++ V +P +V G D P A LDG +VR + G+P Sbjct: 39 VAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRTSLEPGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + KL +G GGLS+++ +GKRA T+ ++ V G P ++VDV++ E K Sbjct: 93 VIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPESKTA 152 Query: 167 ------VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLV Sbjct: 153 DPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLV 212 Query: 220 LRSIADLNP 228 LR+ D P Sbjct: 213 LRNQIDDRP 221 >gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16] gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16] Length = 280 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 100/180 (55%), Gaps = 14/180 (7%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + + L V++P +V G +D M+ L+G +VR + +G+P+ KL Sbjct: 45 DLNLGQPLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---- 168 G GGLS+++ GKRA T+ ++ V G P ++VDV+ V + E K T + Sbjct: 99 APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVI-VNTNEEAKTTQSGSIS 157 Query: 169 -VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D+ Sbjct: 158 KIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDV 217 >gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 280 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 64/213 (30%), Positives = 113/213 (53%), Gaps = 19/213 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ DL +G + + L V +P +V G +D ++ L+G +VR + +G+P Sbjct: 39 VVVAANDLNLGQPLNGSQLRLVNWPTASVPPGAFED------LKLLEGRVVRTSLQRGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + KL G GGLS+++ GKRA T+ ++ V G P ++VDV++ + +E T Sbjct: 93 VLDAKLAPIGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIV--NTNEEAKT 150 Query: 167 VT------VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLV Sbjct: 151 AQNGSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLV 210 Query: 220 LRS---IADLNPSSSEDSDVWDVQEEGKEIQII 249 LR+ +AD+N + + E +++++ Sbjct: 211 LRNQMDVADINTGGATKGTLLGKAPEAPQVKVV 243 >gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 78.2 bits (191), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/171 (33%), Positives = 84/171 (49%), Gaps = 21/171 (12%) Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + P+A L G LVR + G PI L+ L R G L+S+L RA ++ + S V Sbjct: 96 LETPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRDRGFLASVLAPDSRAISIKVDEESGV 155 Query: 143 GGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDERV---LVG--- 192 G+I+P DHVDV++ + + R+ VVL N+RVIAID I R L G Sbjct: 156 SGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGNVRVIAIDQEIVQGGRTVSSLAGKQA 215 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 T +LEL P Q K + A+ + +SL +R+ + WD + G Sbjct: 216 QTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQ----------WDTADTG 256 >gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] Length = 276 Score = 77.8 bits (190), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/217 (29%), Positives = 112/217 (51%), Gaps = 18/217 (8%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 A++AG+ A+ S +QT A +V ++ D+++G + N++ V++P Sbjct: 12 IAVLAGLAAVSFASRWLLQTSS------AAVTSVAVASSDISLGQPLNQNLIHMVSWPTS 65 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAAT 133 +V G D + L+G ++ + G+P+ KL +G GGLS+++ +G RA T Sbjct: 66 SVPPGAFAD------SKALEGRVLLTSLAPGEPVLESKLAPQGTKGGLSAVIGEGHRAIT 119 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNIDSDERV 189 + ++ V G P ++VDV++ + + + +VL I V+A+ + D+ Sbjct: 120 VRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKILVLAVAQRVSRDDTA 179 Query: 190 -LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 180 PKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVD 216 >gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 281 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 45 DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168 G GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + Sbjct: 99 APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158 Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +VL +I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 281 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 45 DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168 G GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + Sbjct: 99 APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158 Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +VL +I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 281 Score = 77.4 bits (189), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/178 (33%), Positives = 97/178 (54%), Gaps = 12/178 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + PN + V++P +V G D +EL+G +VR + +G+P+ KL Sbjct: 45 DLNLGEPLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168 G GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + Sbjct: 99 APVGTKGGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISK 158 Query: 169 VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +VL +I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 159 IVLEHILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVD 216 >gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] Length = 311 Score = 77.0 bits (188), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 83/146 (56%), Gaps = 9/146 (6%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + R IL +PI K+V GG ++ +L G RA + +S+ + GG I P D VD Sbjct: 136 GGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSVDNTAGGFILPGDRVD 195 Query: 154 VVMVRSLSERKPTVTV-----VLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKA 206 +++ L T+ VL NIRV+AID ++ + D++ ++G+TATLE++P + Sbjct: 196 ILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVIGATATLEVSPGDGQV 255 Query: 207 LVAAQSVAKLSLVLRSIADLN-PSSS 231 + A++ LSL+LRS AD PS + Sbjct: 256 VTLAKASGTLSLMLRSYADAQGPSGA 281 >gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] Length = 295 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/216 (29%), Positives = 108/216 (50%), Gaps = 36/216 (16%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 V++EN A+ ++V + +L+ G ++ +EW A + D F+ N Q+L G Sbjct: 36 VVSENKAQ-VSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQ-----NESQDLSGA 89 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 LV PI G+ I L+ R + +++L G RA T+++ + + G+++P + VDV+ Sbjct: 90 LVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLLRPGNRVDVI 149 Query: 156 MV--------RSLSERK--PTVTVVLSNIRVIAIDHNID----------SDERVLVGSTA 195 + R+ + +K +L N+RVIA+DH I+ SD R++ ST Sbjct: 150 LAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSDPRMVRSSTP 209 Query: 196 ---------TLELTPMQAKALVAAQSVAKLSLVLRS 222 TLE+TP + L A+S +LSL LR+ Sbjct: 210 ANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRN 245 >gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense MSR-1] Length = 288 Score = 77.0 bits (188), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/209 (30%), Positives = 103/209 (49%), Gaps = 20/209 (9%) Query: 34 TEEVITENP---AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 T++ T P A + VL+ D+A G ++ L + +P N F+ + Sbjct: 27 TDKQSTARPTVAADSVEVLVLARDVATGSALSDADLRYENWPAVNAGR-FMTRKDGDDPK 85 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G + R P+ +G+P R G+G L+ +L G RA ++ IS +SAV G + P Sbjct: 86 ARAIGAVARRPLSEGEPFTPSATFTRDGSGILAGMLAPGMRAVSVAISNASAVSGFVVPG 145 Query: 150 DHVDVVMV----RSLSER---------KPTVTVVLSNIRVIAIDHNID--SDERVLVGST 194 D VDVV+ R+ SE + VL++++V+A+D D + G T Sbjct: 146 DRVDVVLAADFQRADSEAAGKGGGAIVRYAAETVLADVKVLAVDQQFSKGKDGPTIQGKT 205 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ATLE++P QA+ LV A + +LSL+LR + Sbjct: 206 ATLEVSPDQAEILVTAGLMGQLSLILRGV 234 >gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH] Length = 279 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/193 (32%), Positives = 104/193 (53%), Gaps = 12/193 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+ +G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLR 212 Query: 222 SIADLNPSSSEDS 234 + D + ++E + Sbjct: 213 NQVDKSALTTEGA 225 >gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264] gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4] gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264] gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264] Length = 279 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 103/191 (53%), Gaps = 12/191 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+ +G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKSLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLR 212 Query: 222 SIADLNPSSSE 232 + D + ++E Sbjct: 213 NQVDKSALTTE 223 >gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 278 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 63/189 (33%), Positives = 100/189 (52%), Gaps = 14/189 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V + ++++G + N++ V +P +V G D P A LDG +VR + G+P Sbjct: 39 VAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKD---PKA---LDGRVVRTSLEPGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + KL +G GGLS+++ +GKRA T+ ++ V G P ++VDV++ E K Sbjct: 93 VIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTA 152 Query: 167 ------VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLV Sbjct: 153 DPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLV 212 Query: 220 LRSIADLNP 228 LR+ D P Sbjct: 213 LRNQIDDRP 221 >gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 264 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 105/202 (51%), Gaps = 13/202 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ VQ +EV+ E P + ++++ + +G + L +P + V + Q Sbjct: 45 VTQVEVQIKEVMKEEPK--VPRVMAQQRIPLGTKIEAKHLSIEYYPTDLVKSKGYETPEQ 102 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145 + G+L R I +GD +R E+LV G G L++L+ RA T+ ++ V G Sbjct: 103 ------VVGMLARNEIFEGDLLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGF 156 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204 + P D VDV+ ++ E+ VL I+++A+D +D+ + ++ TLELTP QA Sbjct: 157 LLPGDFVDVIYIK---EKSNNAITVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQA 213 Query: 205 KALVAAQSVAKLSLVLRSIADL 226 ++LV A+S +L L LR+ D+ Sbjct: 214 ESLVTAKSKGELQLSLRNPNDI 235 >gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265] Length = 262 Score = 76.6 bits (187), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 98/181 (54%), Gaps = 8/181 (4%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+I + +G +T ++ V +P ++ G + E+ G + RV ++ G+ Sbjct: 34 KVVIVAQPIELGKAITTEQIKTVNWPGADIPQGAVSKA------TEVVGRIARVSMMPGE 87 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 P+ KL +G GGL+S++ GKRA T+ ++ AV G P VD+++ + R+P Sbjct: 88 PVLPGKLAPKGATGGLASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQP 147 Query: 166 TVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VLS ++V+A+ ++ ++ V + TLELTP +++ L A+S+ LSLVLR+ Sbjct: 148 FSRTVLSRVKVLAVAQETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNEL 207 Query: 225 D 225 D Sbjct: 208 D 208 >gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9] gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 7894] gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 112] gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 281 Score = 76.6 bits (187), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis C6786] Length = 282 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ +G + PN L V +P +V G DV + L+G +VR + +G+P+ KL Sbjct: 45 DVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRVVRTSLARGEPVLGSKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTV-- 169 G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P ++ Sbjct: 99 APVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISK 158 Query: 170 -VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 VL I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 159 IVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVD 216 >gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14] Length = 281 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 281 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei DM98] Length = 245 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis EO147] Length = 274 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/178 (34%), Positives = 96/178 (53%), Gaps = 12/178 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ +G + PN L V +P +V G DV + L+G +VR + +G+P+ KL Sbjct: 37 DVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KSLEGRVVRTSLARGEPVLGSKL 90 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTV-- 169 G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P ++ Sbjct: 91 APVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISK 150 Query: 170 -VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 VL I V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 151 IVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVD 208 >gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91] Length = 251 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei B7210] Length = 253 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] Length = 292 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 74/273 (27%), Positives = 124/273 (45%), Gaps = 48/273 (17%) Query: 6 LMGIVVSGVFALVAG---IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+G+V+ G AL +G ++A +TE + VL+++ G ++ Sbjct: 15 LIGVVILGRLALHSGEKPVVAQ-------------VTEKKVPTVGVLVARKAEPAGALLQ 61 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121 L+ FP V G I DV P+ L G L+RVP+ +G + E ++ G+ G L Sbjct: 62 SGDLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFL 119 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------------- 162 +++L G A ++ + S V +I+P D+VD+++ ++ Sbjct: 120 AAVLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAG 179 Query: 163 -RKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + VLS +RV+AID H D R + T TLE+TP QA+A+ A + +L+ Sbjct: 180 GGRIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLT 239 Query: 218 LVLRS-----IADLNPSSSEDSDVWDVQEEGKE 245 L +RS +A P ++ DV G E Sbjct: 240 LAVRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272 >gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] Length = 337 Score = 76.3 bits (186), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 99/190 (52%), Gaps = 13/190 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL++ L VG ++ + +P++ V + A L G ++R I G Sbjct: 48 HVLVAVKALPVGTILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQ 105 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161 P+ LV G+ G L++ L G RA T+ +S ++V G + P D +D+V+ +S++ Sbjct: 106 PLTQGSLVKPGDRGFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGD 165 Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVAK 215 E +L N+RV+A D +D+ D + +V S TLE+TP A+ + AQ+V Sbjct: 166 GEPLKVSETILRNLRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGS 225 Query: 216 LSLVLRSIAD 225 LS+ LRS+AD Sbjct: 226 LSMSLRSMAD 235 >gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 281 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 100/184 (54%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQID 216 >gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] Length = 283 Score = 75.9 bits (185), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 117/226 (51%), Gaps = 20/226 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + ALVAGI A+ S Q ++ + V+++ D+ +G + L V++P Sbjct: 11 IVALVAGIAAVVSASRWLSQ------QSTSSVKQVVVAASDMDLGQPLGNEQLRTVSWPA 64 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAA 132 ++ G DD P A+Q G +VR + KG+PI KL G GGLS+++ +GKRA Sbjct: 65 GSLPPGTFDD---PKALQ---GRVVRASLQKGEPILENKLAPIGTKGGLSAVIAEGKRAI 118 Query: 133 TMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 T+ ++ V G P + VDV++ + + +VL I V+A+ + D Sbjct: 119 TVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLEKILVLAVAQQVSRD 178 Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 + + V + TLE+TP QA+ L A+SV LSLVLR+ D+ +++ Sbjct: 179 DTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATAT 224 >gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4] Length = 270 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 20/218 (9%) Query: 14 VFALVAGIIAMRLVS---PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + +LV G+ A+ L + QTE V T + NV+ ++ +G ++ L Sbjct: 10 ILSLVFGVTAVYLAQSWLKSNTQTETVGTTS-----NVITMVTEVPLGTIIERKHLALTP 64 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129 PE V G I D+ E +G +V+ + +G+ +R E+L +G G L+SL+ Sbjct: 65 VPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGSTLASLITPTM 118 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER- 188 RA T+ ++ V G + P + VD++ + S K +VLSN++++AID +DE Sbjct: 119 RAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAIDQKASNDENK 176 Query: 189 -VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 VLV + TLEL+ QA+ L+ A+S L L LR+ D Sbjct: 177 PVLVRA-VTLELSLEQAEVLMIAKSRGSLQLALRNPND 213 >gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 291 Score = 75.9 bits (185), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 108/201 (53%), Gaps = 19/201 (9%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 +EV + A+ ++++ D+ +G +TP L+ ++P++++ P + + ++ Sbjct: 31 QEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSI---------PPGSARGIE 81 Query: 95 GVLVRV---PILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 V RV PI GD + KL R G G ++ ++P+G RA T+ ++ + V G + Sbjct: 82 AVANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLT 141 Query: 148 PNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204 P+D VDV++ + +E++ +VL N+ ++A D E + +V T TL+L P A Sbjct: 142 PSDRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDA 201 Query: 205 KALVAAQSVAKLSLVLRSIAD 225 + LV + S L L+LR+I+D Sbjct: 202 EKLVLSASKGSLQLLLRNISD 222 >gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 262 Score = 75.5 bits (184), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 81/137 (59%), Gaps = 2/137 (1%) Query: 97 LVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + RV ++ G+P+ KL +G GGL+S++P GKRA T+ ++ AV G P +VDV+ Sbjct: 78 IARVSMMPGEPVLPGKLAPKGATGGLASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVL 137 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214 + + +P VL+ ++V+AI ++ ++ V + TLELTP +++ L A+S+ Sbjct: 138 VSGKDASHQPFARTVLNRVKVLAIAQETTAEPDKPKVVNAVTLELTPHESEKLDLARSIG 197 Query: 215 KLSLVLRSIADLNPSSS 231 LSLVLR+ D +S Sbjct: 198 SLSLVLRNELDTGEENS 214 >gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 266 Score = 75.5 bits (184), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 60/202 (29%), Positives = 103/202 (50%), Gaps = 13/202 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ VQ +EV+ E P + + ++ + +G + L +P + V + Q Sbjct: 45 VTQVEVQIKEVMKEEPK--VPRVTAQQRIPLGTKIEAKHLSIEYYPTDLVSTKGYETPEQ 102 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGM 145 + G+L R I +GD +R E+LV G G L++L+ RA T+ ++ V G Sbjct: 103 ------VVGMLARNEIFEGDLLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGF 156 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204 + P D VDV+ + E+ VL I+++A+D +D+ + ++ TLELTP QA Sbjct: 157 LLPGDFVDVIYTK---EKSNNAVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQA 213 Query: 205 KALVAAQSVAKLSLVLRSIADL 226 ++LV A+S +L L LR+ D+ Sbjct: 214 ESLVTAKSKGELQLSLRNPNDI 235 >gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 282 Score = 75.1 bits (183), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 117/229 (51%), Gaps = 25/229 (10%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A AG+ A+ + VQ T V+I+ D+++G V+P +L+ +P + Sbjct: 13 ATAAGLAAVVFAARWMVQQTSTST------TKVVIASADMSLGQRVSPEMLKVSDWPAGS 66 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATM 134 V G +DV ++L+G +++ + +G+P+ KL G GGLS+++ +GKRA T+ Sbjct: 67 VPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTLGGLSAVINEGKRAITV 120 Query: 135 DISISSAVGGMIKPNDHVDVVMVR----------SLSERKPTVT-VVLSNIRVIAIDHNI 183 ++ V G P ++VD+++ S R ++ +VL I V+A+ Sbjct: 121 RVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNISKIVLEKILVLAVAQEA 180 Query: 184 DSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 DE + V TLE+TP QA+ + A+S+ LSLVLR+ D +S+ Sbjct: 181 GRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDPQDTST 229 >gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 256 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+++G + PN L V +P +V G D ++ L+G + R + +G+P Sbjct: 39 VAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVARTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVTV---VLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++ VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQVD 216 >gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] Length = 282 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 122/229 (53%), Gaps = 26/229 (11%) Query: 9 IVVSGVFALVAGIIAMRLVSPH-HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 IVVS + LVA ++A + ++ +V ++V+ ++ D+ +G ++P +L Sbjct: 2 IVVSVIIGLVAVVMASQWINKQTNVAAQKVV-----------VASMDIDLGSKLSPEMLR 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 V +P ++ +G I D P A LDG +++ + +G+ I KL G GGLS+++ Sbjct: 51 SVDWPSGSIPEGAILD---PKA---LDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSNIRVIAID 180 +GKRA T+ ++ V G P ++VD+++ + +K +VL +I V+A+ Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D P Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKP 213 >gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum magnetotacticum MS-1] Length = 296 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 74/248 (29%), Positives = 113/248 (45%), Gaps = 34/248 (13%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP--NAMQELDGVLVRV 100 A + VL+ D+ G ++ + L + ++P + V +P +A G++ R Sbjct: 30 APVVEVLVINRDVPSGAALSVDDLRYESWPRSAATARLV--VRRPGEDAKAAFVGMIARR 87 Query: 101 PILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + +G+P+ + G L+ LL GKRA ++ I+ +AV G I P D VDVVM+ Sbjct: 88 ALTEGEPVSAATTFKPDSSGVLAGLLGPGKRAISITITNPTAVSGFITPGDRVDVVMLTD 147 Query: 160 LS--------ERKPT--------------VTVVLSNIRVIAIDHNI--DSDERVLVGSTA 195 L E K VLS+IRV+AID I D + G TA Sbjct: 148 LKKIEDAQGRESKQEEGRFGGETLLVRFGAETVLSDIRVLAIDQQITRGRDGAAIQGKTA 207 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-SSEDSDVWDVQ---EEGKEIQIIKA 251 TLE+TP QA+ LV A+++ L L LR P+ + + ++ D E GK +Q Sbjct: 208 TLEVTPKQAEILVLAETMGMLQLSLRPQQGDGPAVAPQPGEMLDFTADLEAGKALQ-ASV 266 Query: 252 GVIVNKDG 259 G K G Sbjct: 267 GFAAKKKG 274 >gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 279 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 97/180 (53%), Gaps = 14/180 (7%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + L V++P +V G D ++ L+G +VR + +G+PI KL Sbjct: 45 DLNLGQPLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---- 168 G GGLS+++ GKRA T+ ++ V G P ++VDV+ V + E K + Sbjct: 99 APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVI-VNTNEEAKSSQNSSIS 157 Query: 169 -VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D+ Sbjct: 158 KIVLEKILVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDV 217 >gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 247 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 49/154 (31%), Positives = 82/154 (53%), Gaps = 7/154 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 D Q + +EL G +V I G+ I +L G G L++L+P+ KRA T+ ++ Sbjct: 75 DEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGSTLAALIPENKRAVTIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELT 200 V G + P + VD++ SE + + VL +I+V+A+D + D + ++ TLE+T Sbjct: 135 VAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVDQTARTKDNKPIIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 P QA+ L+ A+S ++ L LR NP E + Sbjct: 195 PRQAEKLLTARSKGEIQLTLR-----NPHEEEKA 223 >gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] Length = 250 Score = 74.7 bits (182), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 85/153 (55%), Gaps = 7/153 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 ++ Q + + L G +V PI +G+ I +++L G G L+SL+P+ RA T+ ++ Sbjct: 75 NISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200 V G + P + VDV+ S S+ VL +I+V+A+D S E + ++ TLE+T Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 P QA+ L++AQS ++ L LR NP E+ Sbjct: 195 PEQAEKLLSAQSKGEIQLTLR-----NPHEPEE 222 >gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] Length = 250 Score = 74.3 bits (181), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 50/143 (34%), Positives = 80/143 (55%), Gaps = 7/143 (4%) Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L G +V PI +G+ I +++L G G L+SL+P+ RA T+ ++ V G + P + Sbjct: 85 LVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRVNDVIGVAGFLLPGNR 144 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAA 210 VDV+ S S+ VL +I+V+A+D S E + ++ TLE+TP QA+ L++A Sbjct: 145 VDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAEKLLSA 204 Query: 211 QSVAKLSLVLRSIADLNPSSSED 233 QS ++ L LR NP E+ Sbjct: 205 QSKGEIQLTLR-----NPHEPEE 222 >gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis MSMB43] Length = 281 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 60/184 (32%), Positives = 99/184 (53%), Gaps = 12/184 (6%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ D+ +G + PN L V +P +V G D ++ L+G +VR + +G+P Sbjct: 39 VAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKPLEGRVVRTSLARGEP 92 Query: 108 IRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKP 165 + KL G GGLS+++ G RA T+ ++ V G P ++VDV++ + S+ P Sbjct: 93 VLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADP 152 Query: 166 TVT---VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + +VL I V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR Sbjct: 153 QQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEKLDLARSVGTLSLVLR 212 Query: 222 SIAD 225 + D Sbjct: 213 NQID 216 >gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] Length = 242 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/227 (26%), Positives = 109/227 (48%), Gaps = 30/227 (13%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 +F L A ++A R ++ + E P + V+++ D+ V+T ++ P Sbjct: 13 LFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSVITREKVKLELVPA 66 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVP---ILKGDPIRLEKLVD--RGNGGLSSLLPKG 128 + P A+++LD V+ RV I+ G+ I K++ L+ +P G Sbjct: 67 Q---------FAHPAAVRDLDEVVGRVAASYIVAGEEILSAKIISDAEKTNKLAYAVPMG 117 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAIDHNIDS 185 KRA ++ ++ S V G+++P D VDV+ L+ + V V +L ++ V+A+D N+D Sbjct: 118 KRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVEVLAVDQNLDE 177 Query: 186 DERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + V +T TL +TP +A+ LV A + L LR+ AD Sbjct: 178 TKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPAD 224 >gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107] gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107] Length = 286 Score = 73.9 bits (180), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 12/191 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVP 101 ++V I+ L G +T + + V +PE + +G +D + P +L VL R+ Sbjct: 47 LVDVFIANDQLKYGERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDLRVVLRRME 106 Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 K + I K+ G + G++S L KG RA + + +SS V G ++P DHVDV SL Sbjct: 107 --KDEAILAVKVTKPGEDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSL 164 Query: 161 SERK-----PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214 +++ ++ +NI +IA+D D + ++ T T + P Q AL AQS Sbjct: 165 NDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTG 224 Query: 215 KLSLVLRSIAD 225 +LSL L D Sbjct: 225 RLSLSLVGAGD 235 >gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34] gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34] Length = 281 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 62/183 (33%), Positives = 104/183 (56%), Gaps = 15/183 (8%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL +G + + L+ V++P +V G +D + LDG +VR + +G+PI KL Sbjct: 45 DLDLGQPLNGSQLKLVSWPAGSVPPGAFED------PKTLDGRVVRTSLQRGEPIIDAKL 98 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVT- 168 G GGLS+++ GKRA T+ ++ V G P ++VDV++ + S + +++ Sbjct: 99 APVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGSISK 158 Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS---IA 224 +VL I V+A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ +A Sbjct: 159 IVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQMDVA 218 Query: 225 DLN 227 D+N Sbjct: 219 DIN 221 >gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] Length = 283 Score = 73.6 bits (179), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 58/182 (31%), Positives = 94/182 (51%), Gaps = 14/182 (7%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L +G + P + V +P ++ G D + +LDG + I G+P+ +L Sbjct: 44 ELQLGSRIAPEAIRLVEWPSGSIPAGAFHD------LAKLDGRVAITGIQPGEPVLESRL 97 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPT 166 G GGLS+++P+GKRA T+ ++ V G P ++VD+++ S + Sbjct: 98 APEGTKGGLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMI 157 Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +VL I V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 158 SKIVLERILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQID 217 Query: 226 LN 227 N Sbjct: 218 SN 219 >gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] Length = 263 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 78/133 (58%), Gaps = 2/133 (1%) Query: 95 GVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + V ++ G+P+ KL GGLSS++PKGKRA T+ ++ AV G P +VD Sbjct: 77 GRIALVSMMPGEPVLPGKLAPTTATGGLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVD 136 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212 V++ + ++P VL ++V+AI +D ++ V + TLELTP +A+ L A++ Sbjct: 137 VLVSSKDANQQPFSVTVLLRVKVLAIAQETTADRDKPKVVNAVTLELTPHEAEKLDLARN 196 Query: 213 VAKLSLVLRSIAD 225 + LSLVLR+ D Sbjct: 197 IGALSLVLRNEFD 209 >gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345] Length = 272 Score = 73.2 bits (178), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/234 (28%), Positives = 122/234 (52%), Gaps = 19/234 (8%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + +LV G+ A+ L + + ++T TE A NV+ ++ +G ++ L + Sbjct: 10 ILSLVFGVTAVYL-AQNWLKTN-TKTEAVASTSNVMTMVTEVPLGTIIERKHLALTPVAD 67 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAA 132 + +G I D+ E +G +V+ + +G+ +R E++ +G G L+SL+ RA Sbjct: 68 NLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGSTLASLITPTMRAV 121 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER--VL 190 T+ ++ V G + P + VD++ + + K +VLSN++++AID +DE VL Sbjct: 122 TIRVNDVVGVAGFLLPGNRVDIINIFTTPSLK--TDIVLSNVKILAIDQKASNDENKPVL 179 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 V + TLEL+ QA+ L+ A+S L L LR NP+ + ++ D++E K Sbjct: 180 VRA-VTLELSLEQAETLMIAKSRGSLQLALR-----NPNDTAVIELADIEEANK 227 >gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 279 Score = 72.8 bits (177), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 60/211 (28%), Positives = 105/211 (49%), Gaps = 25/211 (11%) Query: 34 TEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ- 91 +E E P + F VL+S D+ VG V TPN+ W + EE + D ++D V + Sbjct: 28 SEHQTKEQPEQVFQRVLVSGQDIGVGDVYTPNMFRWQSLSEEQLSD-YVDYVTEDEITSI 86 Query: 92 ELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 L + + I +G I L+ +G L+ + G RA ++ + +A G ++P D Sbjct: 87 NLASGIAHIAIKQGQVIAAADLIPPQGGASLALKVRAGYRAVSVPVDQVTANSGFVQPGD 146 Query: 151 HVDVVMVRS-LSERKP--------TVTVVLSNIRVIAIDHNIDSDE-----------RVL 190 VD++++ S +SE K V+ + +N+R++A + N+ S E ++ Sbjct: 147 KVDILLLGSKVSELKKYDNVVEGLYVSTIATNVRILAFN-NLSSSEGFQEKRHDYGAKIP 205 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 S+ +LE+TP QA +V A + +L+L LR Sbjct: 206 DNSSVSLEVTPEQATQIVLANQLGRLTLSLR 236 >gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] Length = 265 Score = 72.8 bits (177), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 52/183 (28%), Positives = 99/183 (54%), Gaps = 10/183 (5%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ ++ G + L+ +++P +N+ +G H+ +A ++G + I G+P Sbjct: 47 VVVAALEIPFGQKIETMHLKVISWPADNMPEGIF---HETSA---VEGRVASQKIYPGEP 100 Query: 108 IRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERK 164 I ++ V++ G LS+++P+ KRA T+ ++ V G + P + VDV+ R + S+ K Sbjct: 101 IMKDRAVEQLGGSTLSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNK 160 Query: 165 PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 + +L N++V+A+D D+ + LV TLE P QA+ L A + LVLR+ Sbjct: 161 VQIETILQNLKVLAVDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNP 220 Query: 224 ADL 226 D+ Sbjct: 221 QDV 223 >gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] Length = 272 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 54/175 (30%), Positives = 92/175 (52%), Gaps = 12/175 (6%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 ++A G V+ P +L+ V P+E+V D ++ L+G + R I+ G+ I+ +L Sbjct: 51 NIAPGSVLIPELLKVVQLPKEHVAADAATD------LKALEGRVTRQLIVAGEVIQEHEL 104 Query: 114 VDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVV 170 +G GG++ ++ KRA T+ + +S V G I P + VDV++ +E K P +V Sbjct: 105 APKGAPGGMAGIIGNDKRAVTIKVDEASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIV 164 Query: 171 LSNIRVIAIDHNID---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 L N+ V+ +I+ + ER V T TLE+TP + + L A ++L LR Sbjct: 165 LQNLPVLGTGQDIEQQKAGERPKVVPTVTLEVTPEEGERLALAAKEGTITLALRG 219 >gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] Length = 266 Score = 71.6 bits (174), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 12/191 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVP 101 ++V I+ L G +T + V +PE + +G +D + P + VL R+ Sbjct: 27 LVDVFIANTQLKYGERLTKEHIRSVRWPENAIPEGAFLTMDALFPPQYPDDHRVVLRRME 86 Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 K + I K+ G + G++S L KG RA + + +SS V G ++P DHVDV SL Sbjct: 87 --KDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSL 144 Query: 161 SERK-----PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214 +++ ++ +NI +IA+D D + ++ T T + P Q AL AQS Sbjct: 145 NDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTG 204 Query: 215 KLSLVLRSIAD 225 +LSL L D Sbjct: 205 RLSLSLVGAGD 215 >gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] Length = 300 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 66/241 (27%), Positives = 110/241 (45%), Gaps = 30/241 (12%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEV----ITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 V AL AG AM ++ + +E + PA + +LI D+ G + + L + Sbjct: 10 VAALAAGGTAM--LAKSWLDRQEARRAKAADEPAT-VEILIINRDVPSGAALAGDDLRYE 66 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNGGLSSLLPKG 128 ++P+ V + ++ G++ R P+ +G+P+ +G ++ LL G Sbjct: 67 SWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASGVMAGLLAPG 126 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT--------------VVLSNI 174 RA ++ I+ +AV G + P D VDVV+ + + + + VL+++ Sbjct: 127 MRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRYGAETVLADL 186 Query: 175 RVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 RV+AID I D + G TATLE+TP QA+ L A + L L LR P E Sbjct: 187 RVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLR------PQRGE 240 Query: 233 D 233 D Sbjct: 241 D 241 >gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 247 Score = 71.2 bits (173), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 49/152 (32%), Positives = 77/152 (50%), Gaps = 7/152 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 D Q +EL G + I G+ I +L G G L+SL+P+ KRA T+ ++ Sbjct: 75 DELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGSTLASLIPENKRAVTIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200 V G + P + VD++ + + + VL I+V+A+D S E + ++ TLE+T Sbjct: 135 VAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVDQTARSKENKPVIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 P QA+ L++AQS + L LR NP E Sbjct: 195 PRQAEKLLSAQSRGNIQLTLR-----NPHEEE 221 >gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 234 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/143 (32%), Positives = 78/143 (54%), Gaps = 6/143 (4%) Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLSSLLPKGKRAATMDISISSAVGGMI 146 A Q++ G + R + +PI L ++ N G L+ L+P+G+RA T+ + S V G++ Sbjct: 76 APQDVVGKITRSELYPEEPIMLNRIYKDSNTDGDLALLIPEGQRALTVAVDDVSGVAGLL 135 Query: 147 KPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTATLELTPM 202 +P DHVD+++ E+ T++L NI+V+A+ ++D+ E+ T TL + P Sbjct: 136 QPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVLAVGQSLDNTPKAEKKTSSQTVTLSVQPG 195 Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225 QA L A + L+LRS D Sbjct: 196 QATPLTLATERGSIRLMLRSPKD 218 >gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] Length = 288 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 86/141 (60%), Gaps = 7/141 (4%) Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149 +++ G++ + P+++GD + +KLV +G G L+SL+ RA T+ ++ V G + P Sbjct: 77 EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVLASLIAPNMRAVTIRVNDVVGVAGFLLPG 136 Query: 150 DHVDVVMV---RSLSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQA 204 + VDV++ R ++ VVLSN++V+A+D N DS++ VLV + TLE+T QA Sbjct: 137 NRVDVLVTLAKRRSADETAQTEVVLSNLKVLAVDQRANQDSNQPVLVRAV-TLEVTLEQA 195 Query: 205 KALVAAQSVAKLSLVLRSIAD 225 + L++A+S + L LR+ D Sbjct: 196 EELMSARSRGNIQLALRNPND 216 >gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB] Length = 292 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 57/200 (28%), Positives = 100/200 (50%), Gaps = 12/200 (6%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 VQT V + + V ++ DL G +T +++ +P +++ G+ D + Sbjct: 34 VQTTVVTEKAEPGGVQVALASADLPWGTKLTREMVKMAEYPPKHLPAGYFSDPAK----- 88 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 ++G ++ P+ +G+ + KL GG+S+++ GKRA + + G I+P Sbjct: 89 -IEGRVLITPVKQGEQLLESKLAPLSVTTGGVSAVVSVGKRAIAVAGDKVIGLAGFIQPG 147 Query: 150 DHVDV-VMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDERVLVGST--ATLELTPMQAK 205 + VDV V +R E+ P+ + VVL N++V+A ID G TLE+TP +A+ Sbjct: 148 NFVDVLVTIRDTQEKTPSTSKVVLENVKVLATGTVIDKKAGTEPGPVDVFTLEVTPEEAE 207 Query: 206 ALVAAQSVAKLSLVLRSIAD 225 L A S+ KL LR++ D Sbjct: 208 RLAFAASLGKLHFALRNVTD 227 >gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] Length = 282 Score = 70.9 bits (172), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 99/187 (52%), Gaps = 9/187 (4%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103 +++ +K L G ++T + + +PE ++ G + + PN ++L VL PI Sbjct: 48 VDIFAAKNPLVYGQMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLR--PIE 105 Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM--VRSL 160 + I K+ G + GL+ L +G RA + + +SS V G ++P D VDV V ++ Sbjct: 106 PNEVILPVKVTSPGEDAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANV 165 Query: 161 SERKPTVT-VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 +R+ +T ++ S++++IAID + D ++ + T T+E++ ++ AL AQ+ LSL Sbjct: 166 GQRRQDLTRLIQSSVKIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSL 225 Query: 219 VLRSIAD 225 L D Sbjct: 226 ALVGYGD 232 >gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] Length = 267 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 9/184 (4%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104 +NV ++ L G +T + VA+PE + +G F ++ + D V + K Sbjct: 28 VNVFVANKTLTYGEELTKENVRAVAWPENALPEGIFSEESDLFPSDSPKDARYVLRTMEK 87 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VR 158 +P+ K+ G + G++S L KG RA + + ++S V G ++P D VDV R Sbjct: 88 NEPLLAVKITAPGEDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPAR 147 Query: 159 SLSERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKL 216 S ER VT ++ SNI +IA+D D ++ T T++ P + L AQS +L Sbjct: 148 SGQERSGEVTRLIQSNIELIAVDQMSGGDFSNAIIARTVTVKAQPEEVARLAQAQSTGRL 207 Query: 217 SLVL 220 SL L Sbjct: 208 SLAL 211 >gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 310 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 73/252 (28%), Positives = 116/252 (46%), Gaps = 28/252 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ ++ + S V L A ++A + V P + A + V+++ ++ G Sbjct: 1 MRVVTIVSLAASAVLGLGALVVA-KTVLPGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQ---------PNAMQELDGVLVRVPILKGDPIRLE 111 + P +L V P V G V Q P A+ L R P+L P ++ Sbjct: 60 LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRL---AAREPVL---PTKIS 113 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TV 167 R +S+ + +G RA T+ + SS VGG P D VDVV++R L+ P Sbjct: 114 GPGSRPT--VSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFIS 171 Query: 168 TVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR----- 221 VV+ N RV+ +D N D + E+ STATLE++ +++ L A ++ LSL LR Sbjct: 172 YVVVQNARVLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEA 231 Query: 222 SIADLNPSSSED 233 IAD P + D Sbjct: 232 EIADAGPLRTGD 243 >gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] Length = 286 Score = 70.5 bits (171), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 58/186 (31%), Positives = 95/186 (51%), Gaps = 12/186 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVP 101 ++V I+ L G +TP + V +P+ + +G +++ P A +E V++R Sbjct: 47 LVDVFIANEPLKYGERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQA-EEKPRVVLRT- 104 Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + K + I K+ G + GL+S L +G RA + + +SS V G ++P D VDV + Sbjct: 105 MEKDEAILAIKVTKPGEDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRV 164 Query: 161 ----SERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVA 214 SER T ++ +NI +IAID + SD + + T T+ P Q AL AQS Sbjct: 165 DDQTSERSGDFTRLIQANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTG 224 Query: 215 KLSLVL 220 +L+L L Sbjct: 225 RLTLSL 230 >gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 247 Score = 70.1 bits (170), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 79/149 (53%), Gaps = 7/149 (4%) Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGG 144 Q A ++L G +V + G+ + + +L ++G G L+SL+P+ KRA T+ ++ V G Sbjct: 78 QFTASEDLIGQVVASNVYPGEILHISRLANQGEGSTLASLIPENKRAVTIRVNDVIGVAG 137 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203 + P + VDV+ + VL I+V+A+D + E + ++ TLE++P Q Sbjct: 138 FLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVDQTARTKENKPIIVRAVTLEVSPRQ 197 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A+ L++AQS + L LR NP E Sbjct: 198 AEKLLSAQSRGDIQLALR-----NPHEEE 221 >gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] Length = 228 Score = 69.7 bits (169), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 51/187 (27%), Positives = 94/187 (50%), Gaps = 16/187 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V ++ ++ +T ++LE+ P V +G + EL G + +V ILK Sbjct: 37 VYVASKNIKANQQITEDMLEYKKVPGNLVVEGAAKN------KDELLGKMAKVDILKNSV 90 Query: 108 IRLEKLVDRG----NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 I E + G NGGL+ ++ KGKRA + + S+ + +++ D VD+++ R+ Sbjct: 91 ISKENVYKEGEPEKNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILTRAKDSN 150 Query: 164 KPTVTVVLSNIRVIAI--DHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSL 218 + T +LSN++++A+ D+++ ++ G ST T+EL+P L+ LSL Sbjct: 151 FVSKT-ILSNVKILALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSL 209 Query: 219 VLRSIAD 225 LR+ D Sbjct: 210 SLRTPGD 216 >gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] Length = 234 Score = 69.3 bits (168), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 57/188 (30%), Positives = 97/188 (51%), Gaps = 14/188 (7%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F V++ K + ++T +++ P E + G D +++ G + R + Sbjct: 38 FKQVVVPKQTIGPNTMLTAQMVKVKDIPVEMIQPGTAMDT------KDVVGKVTRSDLYP 91 Query: 105 GDPIRLEKL-VDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 +PI L +L D+ G L+ +P G+RA T+++ S V GM+KP DHVD+++ Sbjct: 92 EEPILLSRLHQDKDSTGELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEV 151 Query: 163 RKPTVT-VVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 K T+T ++L NI+V+A+ ++ S D++V T TL +TP QA L K+ Sbjct: 152 EKTTLTSLLLQNIKVLAVGQSLVSAQKGDQKVNT-QTVTLAVTPEQAPPLTLGSERGKIR 210 Query: 218 LVLRSIAD 225 L+LRS D Sbjct: 211 LMLRSPKD 218 >gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] Length = 267 Score = 68.9 bits (167), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 113/223 (50%), Gaps = 18/223 (8%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ +V+S VF + A +A + + +EVI+ V+ ++ +G ++ Sbjct: 6 LLFVVLSLVFGVTAVYLAQNWLKSN--TKDEVISTTGT----VITMATEVPLGAILQRKH 59 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124 L PE + G + D + E +G +V+ + G+ +R E+L +G G L+SL Sbjct: 60 LSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGSTLASL 113 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 + RA T+ ++ V G + P + VD++ + S K +VLSN++++AID Sbjct: 114 ITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAIDQRAS 171 Query: 185 SDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +DE VLV + TLEL+ QA+ L+ A+S L L LR+ D Sbjct: 172 NDENKPVLVRA-VTLELSLDQAEILMIAKSRGSLQLALRNPND 213 >gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS] gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 278 Score = 68.9 bits (167), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 44/133 (33%), Positives = 79/133 (59%), Gaps = 2/133 (1%) Query: 95 GVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + VP++ G+P+ KL G GGLSS++P GKRA ++ ++ V G P +VD Sbjct: 76 GRIALVPMIPGEPVLPGKLAPIGATGGLSSIIPAGKRAISVRVNDVVGVAGFALPGSYVD 135 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQS 212 +++ +P +VLS ++V+A++ + + ++ V + TLEL+P +++ L A++ Sbjct: 136 ILVSGRDVSGQPFSRIVLSKVKVLAVEQDTVAEKDKPKVVNAVTLELSPQESEKLDLARN 195 Query: 213 VAKLSLVLRSIAD 225 + LSLVLR+ D Sbjct: 196 IGALSLVLRNELD 208 >gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] Length = 272 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 63/227 (27%), Positives = 104/227 (45%), Gaps = 17/227 (7%) Query: 7 MGIVVSGVFALVAGIIAMRLVS---PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 G +++ A++ G+IA+ LV+ V E ++++ D+ +G + Sbjct: 4 YGTIIALALAVIFGVIAVILVNRWLSSKVSQEATTPRESIAMTEIVVAAADVNIGTRLDQ 63 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRGNG- 119 +L +P+ +V G +D+ Q V+ RV + K G PI +L +G Sbjct: 64 TLLAMAQWPKASVPKGAFEDIEQ---------VVGRVSVSKMVTGTPILAAELAAPNSGA 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 GL +L+ G RA + ++ VGG I PN VD++ + S+R L + V+AI Sbjct: 115 GLVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAI 174 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +E + V T TLELTP A+ LV + LVLR+ D Sbjct: 175 AQETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLD 221 >gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379] Length = 291 Score = 68.6 bits (166), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 96/191 (50%), Gaps = 15/191 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K ++++ D+ VG + L+ +A+P ++ G D +D + +R PI Sbjct: 40 KGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTDTKA-----LIDRISIR-PIG 93 Query: 104 KGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR- 158 G+P+ KL+ R G G ++ ++P G RA T+ ++ + V G + P++ VDVV+ Sbjct: 94 PGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPHNKVDVVLTTI 153 Query: 159 SLSERKPTVT---VVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVA 214 P T +VL N+ ++A + D + +V T T++LTP A+ LV A S Sbjct: 154 PPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDAEKLVVASSKG 213 Query: 215 KLSLVLRSIAD 225 L ++LR I D Sbjct: 214 SLQMLLRGIRD 224 >gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009] gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 193 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 57/104 (54%), Gaps = 3/104 (2%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID-DVHQPNAMQELDGVLVRVP 101 A+ + VL++K D+ +G VTP L+W +P FI D+H P A ++ G + R P Sbjct: 44 AQTVEVLVAKNDIPLGQAVTPGDLQWQTWPAATASSNFIRRDLH-PGATTDIGGSITRAP 102 Query: 102 ILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGG 144 + G+PIR +KLV G+ + + +P G RA + + ++ G Sbjct: 103 FIAGEPIRRQKLVQADGSSSVPAFVPTGMRAISTETALEPGATG 146 >gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12] Length = 280 Score = 68.2 bits (165), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 3/122 (2%) Query: 106 DPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 +P+ K+ + G + G+SS L KG RA + ++++S V G ++P D VDV S S+ + Sbjct: 108 EPVLAVKVTEPGQDAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGS-SKGQ 166 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ S++++I ID N D D + T T+E TP Q L AQ LSL L Sbjct: 167 DVTKLIQSSMQIIGIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGA 226 Query: 224 AD 225 AD Sbjct: 227 AD 228 >gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 248 Score = 67.8 bits (164), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 84/153 (54%), Gaps = 7/153 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ ++ Sbjct: 75 ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200 V G + P + VDV+ S S+ + VL +I+V+A+D + E + ++ TLE+T Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 P QA+ L++A+S ++ L LR NP E+ Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222 >gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] Length = 286 Score = 67.8 bits (164), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 98/188 (52%), Gaps = 16/188 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + ++ D+ +G ++P ++ +P + G + + L+G +V V + +G+ Sbjct: 36 RIAVANTDIELGGRISPEMIRMADWPLGSTPTGAYKEAAK------LEGRVVLVSMQRGE 89 Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--- 162 P+ +L G GGLS+++P+GKRA T+ ++ V G P VD VMV + E Sbjct: 90 PLIEARLAPIGTKGGLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVD-VMVNTQDEGGQ 148 Query: 163 ---RKPTVT-VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217 R +V+ +VL I V+A+ D D + V + TLE+TP A+ L A+SV LS Sbjct: 149 RNDRDRSVSKIVLERILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLS 208 Query: 218 LVLRSIAD 225 LVLR+ D Sbjct: 209 LVLRNQTD 216 >gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] Length = 293 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 58/197 (29%), Positives = 92/197 (46%), Gaps = 7/197 (3%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + VL++ L G +T + V +PE V +G ++ + V + K Sbjct: 56 VGVLVANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKD 115 Query: 106 DPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161 + I K+ G GL+S L KG RA + + ++S V G ++P D VDV SLS Sbjct: 116 EAIMEVKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAV 175 Query: 162 --ERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 R ++ +NI +IA+D + SD + T T+ TP Q AL AQ+ +LSL Sbjct: 176 EGARGEITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSL 235 Query: 219 VLRSIADLNPSSSEDSD 235 L + D +S+ + D Sbjct: 236 ALVGVHDETVASAIEVD 252 >gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4] Length = 272 Score = 67.4 bits (163), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 64/244 (26%), Positives = 117/244 (47%), Gaps = 18/244 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAGI+ R V + V + T+ P + +++S D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQ---TQQPPGVV-LVVSAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGN 118 + + L+ F + G D + L G ++ P+ G+ I +L+ D + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ + + K V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDV 236 +DV Sbjct: 231 GTDV 234 >gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] Length = 247 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 7/149 (4%) Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGG 144 Q +EL G +V I +G+ + +L G G L+SL+P+ KRA T+ ++ V G Sbjct: 78 QFTKAEELIGQVVATTIYQGEVVHQNRLAAPGEGSTLASLIPENKRAVTIRVNDVIGVAG 137 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQ 203 + P + VDV+ S VL +I+V+A+D + E + ++ TLE++P Sbjct: 138 FLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVSPKD 197 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A+ L+ A+S ++ L LR NP E Sbjct: 198 AEKLLTARSKGEIQLTLR-----NPHEEE 221 >gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] Length = 287 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 93/186 (50%), Gaps = 13/186 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQ-PNAMQELDGVLVRVPIL 103 + V ++ G L G +T + V +PE+ + +G FI++ P +L VL + Sbjct: 48 VGVYVANGPLKYGQRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLR--AME 105 Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----R 158 K + I K+ + G + GL+S L +G RA + + +SS V G ++P D VDV R Sbjct: 106 KDEAIMAAKVTEPGADTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINR 165 Query: 159 SLSERKPT---VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVA 214 ++R T ++ + +++IAID + + + +T T+ + P Q AL AQS Sbjct: 166 GGNDRADTGDVTKLIEAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTG 225 Query: 215 KLSLVL 220 LSL L Sbjct: 226 DLSLSL 231 >gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/202 (27%), Positives = 101/202 (50%), Gaps = 11/202 (5%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 H++ E +++ A +L+++ ++ ++ ++ P++ + I + Sbjct: 23 HYLNEMERQSKSAANLTTILVAREEIPARTRLSASMFTTAEVPQDAIHGDAIRET----- 77 Query: 90 MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ELDG R ++ G+ + +LV ++ GLS + G RA T+ ++ S V G I P Sbjct: 78 -SELDGAYARERLVAGEQVLSARLVFEQSETGLSYKVSDGHRAVTVPVNNVSGVAGYILP 136 Query: 149 NDHVDVVMVRSLSERKPTVT-VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQA-K 205 D+VD ++ +E + TVT VV S I+V+A + ++ D L+ T TL+ TP A Sbjct: 137 GDYVDAIVTIESTEDEDTVTKVVESKIKVLASGQYTVEQDREQLIVETVTLD-TPADAVT 195 Query: 206 ALVAAQSVAKLSLVLRSIADLN 227 A++ A L LVLR + + N Sbjct: 196 AIIQASERGSLRLVLRPVEESN 217 >gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] Length = 248 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ ++ Sbjct: 75 ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200 V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ TLE+T Sbjct: 135 VAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 P QA+ L++A+S ++ L LR NP E+ Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222 >gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] Length = 248 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 49/153 (32%), Positives = 83/153 (54%), Gaps = 7/153 (4%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ ++ Sbjct: 75 ELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRVNDVIG 134 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELT 200 V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ TLE+T Sbjct: 135 VAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVT 194 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 P QA+ L++A+S ++ L LR NP E+ Sbjct: 195 PDQAEKLLSAKSKGEIQLTLR-----NPHEPEE 222 >gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 307 Score = 67.0 bits (162), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 41/103 (39%), Positives = 60/103 (58%), Gaps = 3/103 (2%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178 LS+L+ +G RA + + V G I PND VDVV+ R E K ++L N++V+A Sbjct: 114 LSTLIEEGMRAVAVRVDDVRGVAGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVLA 173 Query: 179 IDH-NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ID D ++ V TLEL P+QA+ ++ AQ V +LSL+L Sbjct: 174 IDQLANDHADKPTVARAVTLELNPVQAQKIILAQGVGRLSLIL 216 >gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132] gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132] Length = 273 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 64/231 (27%), Positives = 114/231 (49%), Gaps = 16/231 (6%) Query: 2 KLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 K TR L+ I +S A++AG+I + + + T + V+++K DL G+ Sbjct: 3 KSTRALVQITLSLFLAVIAGVIIFKWTNGVK---QAAPTAVVENTVPVVVAKTDLGRGVK 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 +T ++LE F +++ G +V Q ++G ++ + GD + KL D+ Sbjct: 60 LTEDMLEIRKFTQDSRPSGAFAEVKQ------VEGRVLNQTVGMGDALTPLKLADKSIMG 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVI 177 GG+S+L+ GKRA + + + G ++P D VDV++ ++ KP +VL I+VI Sbjct: 114 GGVSALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVI 173 Query: 178 AIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 A + + + +V TLELTP +++ L A + L LR+ D Sbjct: 174 ATGTQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQD 224 >gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 338 Score = 66.6 bits (161), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 62/191 (32%), Positives = 104/191 (54%), Gaps = 15/191 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF-IDDVHQPNAMQELDGVLVRVPILKG 105 +VL++ L VG ++ + +P++ V + I P Q+L G ++R I G Sbjct: 48 HVLVATKALPVGTILDAESFRFQPWPKDLVEQAYYIKGQADP---QKLVGSVIRTAISAG 104 Query: 106 DPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--- 161 P+ L ++ G G L++ L G RA T+ +S ++V G + P D VD+V+ +S+S Sbjct: 105 QPMTLGSVIKPGERGFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGG 164 Query: 162 ERKP--TVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVA 214 E +P +L N+RV+A D +D+ D + +V S T+E+TP A+ + AQ++ Sbjct: 165 EGEPLKVSETILRNLRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224 Query: 215 KLSLVLRSIAD 225 LSL LRS+AD Sbjct: 225 SLSLSLRSLAD 235 >gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] Length = 286 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 68/274 (24%), Positives = 125/274 (45%), Gaps = 39/274 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIA--MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 M RLM VF + G++ M + SP T + + K + +L+S ++ G Sbjct: 1 MTAKRLMYF---SVFISLIGLLGLFMSVSSP----TAPALIKEENKTLTILVSSQEIKSG 53 Query: 59 MVVTPNILEWVAFPEENVFDG--FIDDVHQPNAMQELDGVLVRVP----ILKGDPIRLEK 112 + + +I W PE ++ + +I + N + V +P + + D + LE Sbjct: 54 RLYSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLED 113 Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------R 163 LS LL G RA ++ + +A G+I+P DHVDV+++ S + R Sbjct: 114 -----GAFLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETR 168 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDER----------VLVGSTATLELTPMQAKALVAAQSV 213 V ++ N+RV+A++ + D + S TLE+ P QA ++ A + Sbjct: 169 SLYVKTIVQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQL 228 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 LS++LR+ +D + ++ D+ D+ E K++Q Sbjct: 229 GTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 262 >gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] Length = 304 Score = 66.6 bits (161), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 66/239 (27%), Positives = 113/239 (47%), Gaps = 24/239 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS----PHHVQTEEVITENPAKFINVLISKGDLA 56 MK + ++++ + A+ AG++ +R + P Q +V AK ++VL++ + Sbjct: 1 MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVE----AKKVDVLVAARAIP 56 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G + +L + E V G + A+ E +G + I K DPI +KL+ + Sbjct: 57 KGARLDAAMLRLKPYEAEAVPGGAL------RAVAEAEGRVAARDISKDDPITPDKLMAK 110 Query: 117 G--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLS 172 G GGL + + GKRA T+ + GG++ P VDVV+ R + + V+L Sbjct: 111 GVTRGGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILE 170 Query: 173 NIRVIA----IDHNIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 NI V+A ++ I D R + ST TL +TP +A+ L A + + + LR D Sbjct: 171 NIPVLATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGD 229 >gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601] gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601] Length = 286 Score = 66.2 bits (160), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 53/192 (27%), Positives = 89/192 (46%), Gaps = 34/192 (17%) Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------NAMQELDGVL-VRVP 101 +A G ++TP+ ++ +P E + +G + +P NAM + D VL RV Sbjct: 57 IARGEILTPDAVKLAPWPMEIMPEGIFTE-KRPLFVEGDAPRVVVNAMDKFDAVLDGRVS 115 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 GD GL+S L +G+RA + + +++ V G ++P D VDV + Sbjct: 116 EPGGD------------AGLTSRLERGERAFAIKVDVATGVSGFLRPGDRVDVYWTGRVP 163 Query: 162 ERKPTV------TVVLSNIRVIAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSV 213 P + ++ + IR+IA+D +S+ + T T+ +TP Q L AQS Sbjct: 164 GNDPNLPQGDVTKLIETGIRLIAVDQTAESETANPTTIARTVTVAITPQQVAGLAQAQST 223 Query: 214 AKLSLVLRSIAD 225 +LSL L + D Sbjct: 224 GRLSLSLMAAND 235 >gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea DSS12] Length = 288 Score = 65.9 bits (159), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 73/276 (26%), Positives = 130/276 (47%), Gaps = 41/276 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV--SPH---HVQTEEVITENPAKFINVLISKGDL 55 M + RLM VF +AG+I + L +P +++TE V E +L++K + Sbjct: 1 MTVKRLMYF---SVFISLAGLIGLYLSISAPQKQINIKTENVRHE-------ILVAKQLI 50 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFID--DVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G + ++ EW A E+ + +D D + + ++ D VLV G + L Sbjct: 51 KSGQRFSASLFEWQALNEDQL-TNLVDYIDRDKFDILKFNDSVLVS-SFTAGHIMSLSDF 108 Query: 114 VDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------ 166 + GG LS L G RA ++ + +A G++ P D VDV+++ S + T Sbjct: 109 LKPEEGGFLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQ 168 Query: 167 ---VTVVLSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSV 213 V + N+RV+A +H + ++ + S TLE+ P QA ++ A + Sbjct: 169 SLYVKTIARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQL 228 Query: 214 AKLSLVLRSIAD-LNPSSSEDS-DVWDVQEEGKEIQ 247 L+LVLRS D ++ ++S+D ++ D+ + K +Q Sbjct: 229 GILTLVLRSNNDSVDEANSQDQINIADIFPDIKRVQ 264 >gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 338 Score = 65.5 bits (158), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 59/190 (31%), Positives = 102/190 (53%), Gaps = 13/190 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL++ L VG ++ + +P+E V + + + Q+L G ++R I G Sbjct: 48 HVLVATKALPVGTILDAESFRFQPWPKELVEQAYY--LKGQSDPQKLVGSVIRTAISAGQ 105 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161 P+ L ++ G G L++ L G RA T+ +S ++V G + P D VD+++ +S+S Sbjct: 106 PMTLGSVIKPGERGFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGD 165 Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDS---DERVLVG--STATLELTPMQAKALVAAQSVAK 215 E +L N+RV+A D +D+ D + +V S T+E+TP A+ + AQ++ Sbjct: 166 GEPLKVSETILRNLRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIGS 225 Query: 216 LSLVLRSIAD 225 LSL LRS+AD Sbjct: 226 LSLSLRSLAD 235 >gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str. Hildenborough] gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1] Length = 272 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 117/244 (47%), Gaps = 18/244 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAG++ R V + V + T+ P + ++++ D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQ---TQQPPGVV-LVVAAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGN 118 + + L+ F + G D + L G ++ P+ G+ I +L+ D + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ + + K V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDV 236 +DV Sbjct: 231 GTDV 234 >gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] Length = 352 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 62/221 (28%), Positives = 102/221 (46%), Gaps = 40/221 (18%) Query: 25 RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 RLVS + + EE V+ P +F G V L+ + +P E +G Sbjct: 53 RLVSANAPKAEERTLVVAAKPMRF------------GDRVRSENLKAIPWPSEERPEGSF 100 Query: 82 --------DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132 DD AM+ +D G+P+ K+ G LS+ L +G +A Sbjct: 101 QTLEAVLGDDTEPRYAMEAID---------PGEPVLTSKITGTGERATLSAALDQGMKAV 151 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNID--SD 186 ++ ++ V G ++P+D VDV++ R + ++ + V V+L ++V+A+D D D Sbjct: 152 SIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVKVLAVDQTADERKD 211 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 E +V T T E+T +A+ L S+ LSL LR+IA N Sbjct: 212 EPSIV-KTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSN 251 >gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] Length = 274 Score = 65.5 bits (158), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 63/239 (26%), Positives = 106/239 (44%), Gaps = 28/239 (11%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPN 64 + I ++ AL+A +A+ ++VQT T++ + V + D+ G ++ P Sbjct: 10 FLYIAIAVGMALLAAFVAV-----NYVQTTVAERTQDNRPMVEVAVPMDDMPQGAILQPG 64 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 L P E D P + +G ++R P+ G P+ LV + S L Sbjct: 65 DLALRRIPAEYA----PADAVTPENHGQFEGRMLRSPVRGGAPLSASALVPLYDQ-FSRL 119 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVIAI 179 +P+GK A T+ + ++++ GMI P D +D++ ++ E T +L +RV+A Sbjct: 120 IPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVLAT 179 Query: 180 DHNIDSDERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 I ERV S+ TLEL QAK L A L ++LR + D +P Sbjct: 180 GTRI--GERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSP 236 >gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149] gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149] Length = 276 Score = 65.1 bits (157), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 51/184 (27%), Positives = 85/184 (46%), Gaps = 8/184 (4%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH--QPNAMQELDGVLVRVPILKG 105 V ++ L G + P + V +P + DG D+ P E L+ P+ Sbjct: 44 VFVATRHLRYGDTLNPEDVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPR--LIIRPMEPN 101 Query: 106 DPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLS 161 + + K+ + G GL++ L KG RA + + +++ V G ++P D VDV V++ + Sbjct: 102 EALLAVKITEPGEDIGLTTRLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSN 161 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 R+ ++ S +R+IA+D D + T T+ +P Q AL AQS LSL L Sbjct: 162 GREDVTKLIQSAVRLIAVDQTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLV 221 Query: 222 SIAD 225 D Sbjct: 222 GAGD 225 >gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM 13528] Length = 321 Score = 65.1 bits (157), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 47/201 (23%), Positives = 93/201 (46%), Gaps = 24/201 (11%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 AK +L++ ++ G ++ +++ + P +FD +I D + + G I Sbjct: 37 AKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSSK------IAGKYTTETI 90 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 K + ++KL+++G L+ + RA ++ ++ S V G++KP D+VD+++ S Sbjct: 91 SKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYTSEKR 150 Query: 163 ------RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA------------TLELTPMQA 204 R +VL NI+V+A+D I D + + + TL + Sbjct: 151 DGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVKVSDL 210 Query: 205 KALVAAQSVAKLSLVLRSIAD 225 + +V AQS+ + L LR + D Sbjct: 211 EKVVLAQSIGSIKLALRPLKD 231 >gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii] gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus Nitrospira defluvii] Length = 403 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 60/206 (29%), Positives = 98/206 (47%), Gaps = 26/206 (12%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 E ++ I + ++ DLA G V+ + + V FP + V +G + + L G +V Sbjct: 41 EAKSRTIPIAVAAADLAWGAVLADDAVRMVPFPADTVPEGHF------ASAETLKGRVVI 94 Query: 100 VPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + + +PI KL +GG++++ KRA + + AVGG IKP D VDV+ Sbjct: 95 MDVKQHEPILESKLAPATVTSGGVAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTT 154 Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNID-----------SDERVLVGSTATLELTPMQA 204 R P VVL N+RV+A+ + + + ++ V S TLE+ P +A Sbjct: 155 VRRPGKTDDPVTKVVLENVRVLAMGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEA 214 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSS 230 + L A + K+ L LR NP S Sbjct: 215 EKLALASTEGKVQLALR-----NPQS 235 >gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36] gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36] Length = 287 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 92/186 (49%), Gaps = 13/186 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQ-PNAMQELDGVLVRVPIL 103 + V ++ G L G +T + V +PE + +G FI++ P +L VL + Sbjct: 48 VGVYVANGPLKYGQRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLR--AME 105 Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----R 158 K + I K+ + G + GL+S L +G RA + + +SS V G ++P D VDV R Sbjct: 106 KDEAIMAVKVTEPGADTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINR 165 Query: 159 SLSERKPT---VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVA 214 ++R T ++ + +++IAID + + + +T T+ + P Q AL AQS Sbjct: 166 GGNDRADTGDVTKLIEAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTG 225 Query: 215 KLSLVL 220 LSL L Sbjct: 226 DLSLSL 231 >gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 342 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 61/205 (29%), Positives = 95/205 (46%), Gaps = 20/205 (9%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQE 92 T V TE V ++ DL G+++ N L W P V G F++ QP A + Sbjct: 30 TPSVATET--DQARVRVAAADLPEGLLLRDNDLAWKRMPRAQVPAGAFVE--SQPGA--D 83 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L G L+R + G PIR+E ++ G L++ L G RA ++ + S G+I+P D Sbjct: 84 LKGALLRNHVGAGAPIRVENVIPAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDF 143 Query: 152 VDVVMVRSL--SERKP---TVTVVLSNIRVIAIDHNID-------SDERVLVGSTATLEL 199 VDV++ + + S P V+ RV+A+ + + T TLE+ Sbjct: 144 VDVLLTQQIGGSATSPGTFEAETVVRRARVLAVGSEFQRAKAPASAPDATARARTVTLEV 203 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIA 224 P A+ ++ A + LSL LRS A Sbjct: 204 APRTAQVVLVATRLGSLSLALRSFA 228 >gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040] gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040] Length = 287 Score = 64.7 bits (156), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 62/227 (27%), Positives = 104/227 (45%), Gaps = 13/227 (5%) Query: 7 MGIVVSGVFALVAGIIAM---RLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVT 62 G+V+ AL G + M + + H +E + A +NV ++ L G +T Sbjct: 5 FGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYGEELT 64 Query: 63 PNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGG 120 + VA+PE + +G F ++ + D V + K +P+ K+ G + G Sbjct: 65 KESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPGEDAG 124 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVT-VVLSNI 174 ++S L KG RA + + ++S V G ++P D VDV R E VT ++ SNI Sbjct: 125 ITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLIQSNI 184 Query: 175 RVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +IA+D D ++ T T++ P + L AQ+ +LSL L Sbjct: 185 ELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLAL 231 >gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] Length = 286 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 91/186 (48%), Gaps = 9/186 (4%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 + ++ + G V+ ++ +P+E + +G D+ + P A E V+ R + K + Sbjct: 50 IYVTTQAVPTGEVLRKEYVKLAPWPQEILPEGVFDETNPPFADGEAPRVVTRA-MDKFEA 108 Query: 108 IRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----- 161 + ++ + G + GL++ L +G+RA + + ++S V G ++P D VDV + Sbjct: 109 VLTTRISEPGGDAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDAN 168 Query: 162 -ERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 R ++ + +++IAID + + + T T+ ++P Q L AQS +LSL Sbjct: 169 LPRGEVTKLIETAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLS 228 Query: 220 LRSIAD 225 L + D Sbjct: 229 LLAAND 234 >gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] Length = 280 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 58/187 (31%), Positives = 97/187 (51%), Gaps = 15/187 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G V P +L V +P ++ G D + L+ +V+V +L+G+ Sbjct: 38 KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKDA------KSLEDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-- 163 I KL G GGLS+++ GKRA T+ ++ V G P ++VD VMV + ++ Sbjct: 92 AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVD-VMVNAQQDKNR 150 Query: 164 ----KPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + VL + V+A+ + D+ + V S TLEL+ ++ L A+SV LSL Sbjct: 151 GEEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSL 210 Query: 219 VLRSIAD 225 VLR+ D Sbjct: 211 VLRNQMD 217 >gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9] gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9] Length = 325 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/221 (27%), Positives = 101/221 (45%), Gaps = 14/221 (6%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPE 73 FA+ AGI+A + + + I N + I +++ GD+ G ++ +IL PE Sbjct: 13 FAIGAGILATFSANKYMKEKISQIEANHRQVMIPRIVAAGDIPEGTIIDSSILAVRDIPE 72 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133 V D P+ + ++G ++ P+ GDP+ S + G+RA T Sbjct: 73 NWVSS----DSLSPDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFSEKVAVGRRAVT 128 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNI----DSDER 188 M + ++V G+I P D +D+ + S R +T +L + V+A D D ER Sbjct: 129 MPVDTINSVSGLIVPGDLIDLYV--SFKYRNRDITAPLLQGVLVLATDKESKLTNDGSER 186 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 ST TL+ +P +A LVAA+ ++ LR+ D S Sbjct: 187 EF--STVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKAS 225 >gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] Length = 307 Score = 64.3 bits (155), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ DL + ++L V +P NV +G D + L +VR ++KG+P Sbjct: 62 VVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPAK------LVDRVVRARVIKGEP 115 Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSER 163 + +L G GL+++LP G RAA + ++ V G I P D VDV++V S Sbjct: 116 VIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSVDVIVVMRPESNGNS 175 Query: 164 KPTV--TVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLS 217 P ++L N+ V+A+ ++ +ER L S ATL + Q++ L AQ+ + Sbjct: 176 NPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQSEKLALAQTKGNIL 235 Query: 218 LVLRS 222 L LRS Sbjct: 236 LTLRS 240 >gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654] gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654] Length = 275 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 6/133 (4%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + S L G RA + ++ +AVGG + P DHVD+V+ + + T V+L + RV+A+D Sbjct: 119 IGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLTQGRGDTLRT-GVILQDTRVLAVD 177 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS----DV 236 + ++ T T+E+ P ++ LV AQ +LSL+LR+ + + D DV Sbjct: 178 QDTEA-RGARKARTITVEVAPRDSQRLVLAQEAGQLSLILRNDDAIGDTGEMDQITLRDV 236 Query: 237 WDVQEEGKEIQII 249 W E E +++ Sbjct: 237 WGDPEPTPEPEVV 249 >gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] Length = 307 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 55/185 (29%), Positives = 92/185 (49%), Gaps = 16/185 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ DL + ++L V +P NV +G D + L +VR ++KG+P Sbjct: 62 VVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPAK------LVDRVVRARVIKGEP 115 Query: 108 IRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSER 163 + +L G GL+++LP G RAA + ++ V G I P D VDV++V + Sbjct: 116 VVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSVDVIVVMRPETNGNS 175 Query: 164 KPTV--TVVLSNIRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLS 217 P ++L N++V+A+ + +ER L S ATL + Q++ L AQ+ + Sbjct: 176 NPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQSEKLALAQTKGSIL 235 Query: 218 LVLRS 222 L LRS Sbjct: 236 LTLRS 240 >gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37] gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37] Length = 288 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 85/189 (44%), Gaps = 23/189 (12%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH-------QPN-AMQELDGVLV 98 + +S +A G +T + +PEE + +G D+ +P A++ +D Sbjct: 49 QIYVSARPIAYGQEITEEDIRLAPWPEEIMPEGIFDEETPLLTENMEPRVALRAIDAFEA 108 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 VP P G+ GL+ L G+ A + + ++S V G ++P D VDV Sbjct: 109 IVPSKVSQP--------GGSAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTG 160 Query: 159 SLSERKPTV------TVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQ 211 + R P + ++L+ IR+IAID N ++D + T T+ T Q L AQ Sbjct: 161 RVDSRDPNMPRGEVTKMILAGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQ 220 Query: 212 SVAKLSLVL 220 S +L+L L Sbjct: 221 STGQLTLSL 229 >gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] Length = 251 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 65/229 (28%), Positives = 115/229 (50%), Gaps = 30/229 (13%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVV-- 61 +M +++S VF L A +IA + + + T E+ I +P VL++ +L GMV+ Sbjct: 7 VMLLLLSIVFGLAAVLIAKQWIDGQNQPTVELEEIERHP-----VLVAAMELEPGMVLEE 61 Query: 62 ---TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 T ++E W+ EE+ ++ G +V I G+ + +L Sbjct: 62 KHLTTKLMEVDWI---EEDTLK----------VSEQALGRIVANTIYSGEMVNPNRLALP 108 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNI 174 G G L++L+P+ KRA T+ ++ V G + P + VD++ S + K T VL NI Sbjct: 109 GEGATLAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNI 168 Query: 175 RVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +V+A+D + D + ++ TLE+TP +A+ L++ S K+ L LR+ Sbjct: 169 KVLAVDQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN 217 >gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114] Length = 282 Score = 63.9 bits (154), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 60/230 (26%), Positives = 99/230 (43%), Gaps = 12/230 (5%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI----NVLISKGDLAVGMVV 61 + G+V+ AL G + M Q E + I V ++ L G + Sbjct: 4 IFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYGDTL 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 P + V +P + G D+ P E L+ P+ + + K+ + G Sbjct: 64 KPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPR--LIIRPMEPSEAVLAVKITEPGED 121 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIR 175 GL++ L KG RA + + ++S V G ++P D VDV V++ + R+ ++ + +R Sbjct: 122 IGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAVR 181 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +IA+D D + T T+ TP Q AL AQS LSL L + D Sbjct: 182 LIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGD 231 >gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] Length = 270 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/163 (28%), Positives = 93/163 (57%), Gaps = 12/163 (7%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148 +E +G++V+ + G+ +R E+++ +G G L+SL+ RA T+ ++ V G + P Sbjct: 78 FEEAEGMVVKHNLYSGEILRSERIIKKGEGSTLASLISPNMRAVTIRVNDVIGVAGFLLP 137 Query: 149 NDHVDVVMVRSLSERKPTVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205 + VDV+ +L ++ ++ +VL+NI+++AID +DE + + TLE++ QA+ Sbjct: 138 GNRVDVL---NLFKKDGSLHTDIVLANIKILAIDQRSSNDENKPTLVRAVTLEMSLEQAE 194 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 L+ A+ KL L LR NP+ S + ++ + E+ + +I Sbjct: 195 TLLIAKGRGKLQLALR-----NPNDSAEVELALINEKQQREEI 232 >gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329] Length = 251 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 48/146 (32%), Positives = 79/146 (54%), Gaps = 4/146 (2%) Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138 +IDD Q L G +V I G+ + +L G G L++L+P+ KRA T+ ++ Sbjct: 73 WIDDETLKVPEQAL-GRIVANTIYAGELVNPNRLAQPGEGATLAALIPENKRAVTIRVND 131 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDS-DERVLVGSTAT 196 V G + P + VDV+ S + K T+ VL NI V+A+D + D + ++ T Sbjct: 132 VIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAVDQTAKTNDNKPVIVRAVT 191 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222 LE+TP +A+ L++A S ++ L LR+ Sbjct: 192 LEVTPKEAEKLLSANSKGEIQLALRN 217 >gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] Length = 375 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 65/245 (26%), Positives = 107/245 (43%), Gaps = 24/245 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ IV+ + A V II L V + P V ++ DL GM++ Sbjct: 1 MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56 Query: 63 PNILEWVAFPEENVFDGFI--DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119 + L W P + V G + D A +L G ++R + G + ++ G Sbjct: 57 ESDLAWKEVPHKQVLQGALVKGDAESAEAT-DLKGDVLRHAVTAGTMLGTADVIPPNAPG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------SERKPTVTVV 170 L++ L G RA ++ I S G+I+P D+VDV++ + L + R V Sbjct: 116 FLAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETV 175 Query: 171 LSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA- 224 ++ +RV+A+ D+ + T T E+TP A+ + A + LSL LRS A Sbjct: 176 VNRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFAT 235 Query: 225 -DLNP 228 D NP Sbjct: 236 SDRNP 240 >gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218] Length = 249 Score = 63.5 bits (153), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 7/144 (4%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPND 150 E+ G + I + I ++L G G L++L+P+ KRA T+ ++ V G + P + Sbjct: 84 EVIGKIAESDIYPNEIIVAQRLSIPGEGATLAALIPEDKRAVTIRVNDVIGVAGFLLPGN 143 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVA 209 VDV+ S+ T +L +IRV+A+D + E + ++ TLE++P +A+ L++ Sbjct: 144 KVDVLNTIQYSKTSANTTTILKDIRVLAVDQTAKTQENKPIIVRAVTLEVSPKEAEKLLS 203 Query: 210 AQSVAKLSLVLRSIADLNPSSSED 233 A+S + LVLR NP + E+ Sbjct: 204 AKSKGDIQLVLR-----NPHAVEE 222 >gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] Length = 291 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/176 (30%), Positives = 83/176 (47%), Gaps = 12/176 (6%) Query: 55 LAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G + P+ +E V +P N + GF+ ++L G V P+ K P+ + L Sbjct: 48 LQSGEQLKPDSMELVNWPASNPIAGGFLKP-------EDLVGRSVLYPVEKDQPLTDKLL 100 Query: 114 VDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVVL 171 G+G GL++ +P G RA ++ V G + P H+DV V R+ +P VL Sbjct: 101 STAGSGPGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVL 160 Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + V+A I D D + + + TL LTP A+ V A S + +LRS +D Sbjct: 161 QDAEVLAAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216 >gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7] gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7] Length = 326 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 97/224 (43%), Gaps = 15/224 (6%) Query: 14 VFALVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A VAG+ A H VQ E P + +++ DL G + P L Sbjct: 14 LLAGVAGLGAAWAAKQHIDGKVQLLEAQARTP--MVERIVAAYDLPAGTRLGPEHLALRH 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 FP G + P EL G ++R P+ GD + + + SS L G+R Sbjct: 72 FPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFSSHLSAGRR 127 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN---IDSDE 187 A +M + ++V G+++P D +D + V +R+ +L + V+A D N + Sbjct: 128 AISMPVDAINSVSGLLQPGDLID-LYVSFEYQRRHITAPLLQGVLVLATDANTQFVQDAG 186 Query: 188 RVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 GS T TL+ +P A LVAA+ ++ VLR D+ S Sbjct: 187 HASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASS 230 >gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 288 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 22/204 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN-AMQELDGVLV 98 ++ K VL+S D+ +G + ++ W E +V D ID + + N ++Q L + Sbjct: 35 QDTVKTYEVLVSTQDVVIGRPYSASLFAWKTVDESSVRDR-IDFIDKANFSIQALKNTVA 93 Query: 99 RVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + G + + GG LS +L RA ++ + +A G+I P DHVDV+++ Sbjct: 94 AADFVTGQILSPSDFLKPEQGGFLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLL 153 Query: 158 RSLSE---------RKPTVTVVLSNIRVIAIDHNID---------SDERVLV-GSTATLE 198 S S+ + V + N+RV+A + + ++ V+ ST TLE Sbjct: 154 ASKSQELRSRGNETQSLYVKTIAQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLE 213 Query: 199 LTPMQAKALVAAQSVAKLSLVLRS 222 ++P+QA + A + LS+VLRS Sbjct: 214 VSPLQANQITLANQLGTLSMVLRS 237 >gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 279 Score = 63.2 bits (152), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 59/223 (26%), Positives = 106/223 (47%), Gaps = 27/223 (12%) Query: 22 IAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 IA+ L++P Q E+ ++ A+ F VL++K + VG T N+ +W E+ + + Sbjct: 18 IAILLLNPSKPQFEQ--SQAAAEIFKRVLVAKQRVVVGQPYTLNMFQWEKVSEQEL-SNY 74 Query: 81 IDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP--KGKRAATMDIS 137 +D + + + + +L + I G + + + NGG+S G RA ++ + Sbjct: 75 LDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDF-ETPNGGISMAFKVQNGHRAISVPVD 133 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLSNIRVIAIDHNIDSDE- 187 +A G ++P D VD++++ S E VT + N+RV+A + D + Sbjct: 134 AVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDF 193 Query: 188 ---RVLVG------STATLELTPMQAKALVAAQSVAKLSLVLR 221 R G S+ +LE+TP QA +V A + KL+L LR Sbjct: 194 QKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLR 236 >gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] Length = 233 Score = 62.8 bits (151), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 58/210 (27%), Positives = 101/210 (48%), Gaps = 21/210 (10%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVR 99 A +++V+++ D+ V +TP++L+ P V P A++ ++ G + Sbjct: 36 AHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSSCV---------HPLAVRRIEDAVGRVTT 86 Query: 100 VPILKGDPIRLEKLVDRGNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 VP+++G+ + KL + L+ L G+RA T+ ++ S VGG++KP D VDVV Sbjct: 87 VPLVRGEVLLQSKLASSKDEKQELALSLQPGERAVTLAVNAVSGVGGVLKPGDRVDVVAT 146 Query: 158 RSLSER--KPTVT-VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 L + K T T +V SN+RV+A+ + + T TL +TP Q + A Sbjct: 147 FDLESQGTKTTYTALVASNVRVLALGSSGEKKPY----DTVTLAVTPRQGALITLATERG 202 Query: 215 KLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + L LR + + + D+ E GK Sbjct: 203 SVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232 >gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 290 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/227 (25%), Positives = 109/227 (48%), Gaps = 26/227 (11%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +++ L S + +E+V + I VL+ + +G TPN +W A P + + +I Sbjct: 18 LSVLLFSQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQNYTPNSFQWKAIPLGEL-ENYI 76 Query: 82 DDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDIS 137 D V P ++ E + G+ + +++G + + + +G LS L G RA ++ + Sbjct: 77 DYV-TPESISEDHSMSGI-AQTKLVEGSVLSHADITEPKGGYSLSFKLQPGYRAISVPVD 134 Query: 138 ISSAVGGMIKPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNIDSDER 188 +A G I+P D VD++++ S S + VT ++ + RV+A ++ ++ Sbjct: 135 QITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTIVHDARVLAFNNTQAAESY 194 Query: 189 VLV----------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V S+ +LE+TP QA +V A+ + KL+L LR D Sbjct: 195 QKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLALRGQND 241 >gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 296 Score = 62.4 bits (150), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 58/218 (26%), Positives = 98/218 (44%), Gaps = 37/218 (16%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD-------GFIDDVHQPNAMQELDG 95 A+ VL++ + G + P L W P + GF D + L G Sbjct: 45 ARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGLFLFGFTD-------TKALKG 97 Query: 96 VLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 LV + G + + LV + LS+++ G RA T+ + +A G+I+P + VDV Sbjct: 98 SLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLIRPGNRVDV 157 Query: 155 VMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA--------- 195 ++ + + K + ++L++I+++AID + +D L G+ A Sbjct: 158 ILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQV-TDIAALNGTVAAQDNFDQVA 216 Query: 196 -TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 T EL P A L+ A + +L+LVLRS A P+ SE Sbjct: 217 VTFELAPSAAARLLLAHRLGELALVLRS-AQAAPTGSE 253 >gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 342 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 90/193 (46%), Gaps = 18/193 (9%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104 + V ++ DL G+++ N L W V G F++ QP A +L G L+R + Sbjct: 40 VRVRVAAADLPEGLLLRDNDLAWKPMARAQVPAGAFVE--SQPGA--DLKGALLRSRVEA 95 Query: 105 GDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G PIR + ++ G L++ L G RA ++ + S G+I+P D VDVV+ + + Sbjct: 96 GAPIRADNVISAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGS 155 Query: 164 KPT-----VTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKALVAAQ 211 T V+ RV+A+ + + + T TLE+ P A+ ++ A Sbjct: 156 ATTPGTFEAETVVRRARVLAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVAT 215 Query: 212 SVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 216 RLGSLSLALRSFA 228 >gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] Length = 233 Score = 62.4 bits (150), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 7/140 (5%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G +V I G+ + +L G G L+SL+P+ KRA T+ ++ V G + P + VD Sbjct: 73 GQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVTIRVNDVIGVAGFLLPGNRVD 132 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQS 212 V+ S VL +I+V+A+D + E + ++ TLE++P A+ L+ A+S Sbjct: 133 VLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIVRAVTLEVSPKDAEKLLTARS 192 Query: 213 VAKLSLVLRSIADLNPSSSE 232 ++ L LR NP E Sbjct: 193 KGEIQLTLR-----NPHEEE 207 >gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] Length = 251 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 111/222 (50%), Gaps = 16/222 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63 +M +++S VF L A +IA + + + T E+ + +P VL++ +L G +++ Sbjct: 7 IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVELEEVERHP-----VLVAAMELEPGTILSE 61 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122 L + +IDD Q L G +V I G+ + +L G G L+ Sbjct: 62 KHLSTKLMEVD-----WIDDETLKVQEQAL-GRIVANTIYAGELVNSNRLALPGEGATLA 115 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAIDH 181 +L+P+ KRA T+ ++ V G + P + VDV+ S + + T VL NI V+A+D Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQ 175 Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + D + ++ TLE+TP +A+ L++A S + L LR+ Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN 217 >gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] Length = 296 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 104/233 (44%), Gaps = 43/233 (18%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN-------VFDGFIDDVHQPNAMQELD 94 P + VL++ + G + P L W A PE GF D + L Sbjct: 44 PDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGFTD-------TKALK 96 Query: 95 GVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G LV + G + + LV + LS+++ G RA T+ + +A G+I+P + VD Sbjct: 97 GSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLIRPGNRVD 156 Query: 154 VVMV----RSLSERKPTVT------VVLSNIRVIAIDHNIDSDERVLVGSTA-------- 195 V++ R + + VT ++L++I+++AID + +D L G+ A Sbjct: 157 VILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQV-TDIAALNGNPAAQDNFDQV 215 Query: 196 --TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS------EDSDVWDVQ 240 T EL P A L+ A + +L+LVLRS A P+ S E S +W Q Sbjct: 216 AVTFELPPRAAARLLLAHRLGELALVLRS-AQSAPAGSPAMALPEGSLIWAEQ 267 >gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 342 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 55/193 (28%), Positives = 91/193 (47%), Gaps = 18/193 (9%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILK 104 + V ++ DL G+++ N L W + V G F++ QP A +L G L+R + Sbjct: 40 VRVRVAAADLPEGLLLRDNDLAWKSMARAQVPAGAFVE--SQPGA--DLKGALLRNRVDA 95 Query: 105 GDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G PIR + ++ G L++ L G RA ++ + S G+I+P D VDVV+ + + Sbjct: 96 GAPIRADNVISAGAPDFLAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGS 155 Query: 164 KPT-----VTVVLSNIRVIAIDHNID-------SDERVLVGSTATLELTPMQAKALVAAQ 211 T V+ RV+A+ + + + T TLE+ P A+ ++ A Sbjct: 156 ATTPGTFEAETVVRRARVLAVGSEFQRAKGPASAPDAPVRARTVTLEVAPRTAQVVLVAT 215 Query: 212 SVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 216 RLGSLSLALRSFA 228 >gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 280 Score = 62.0 bits (149), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 103/217 (47%), Gaps = 25/217 (11%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV-HQPNAMQELDGVLVRVPIL 103 F VL++K + +G T N+ EW ++ + D ++D + + ++Q+ + IL Sbjct: 40 FKRVLVAKQKVDIGQPYTLNMFEWKQVSQQEL-DNYLDYISREAFSVQQFTPGIAHSEIL 98 Query: 104 KGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LS 161 G + +G L+ + G RA ++ + +A G ++P D VD++++ S + Sbjct: 99 AGQVMSAGDFSTPKGGVSLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVE 158 Query: 162 ERKP--------TVTVVLSNIRVIAIDHNIDSD----ERVLVG------STATLELTPMQ 203 E K VT + ++RV+A + D+D +R G S+ +LE+ P Q Sbjct: 159 ELKKYDNKVSGLYVTTIAKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQ 218 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 A +V A + KL+L LR + S+D ++ V+ Sbjct: 219 ATQIVLANQIGKLTLSLRGAGE---DDSDDQSIYTVK 252 >gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B] gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B] Length = 251 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 64/222 (28%), Positives = 111/222 (50%), Gaps = 16/222 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63 +M +++S VF L A +IA + + + T E+ + +P VL++ +L G +++ Sbjct: 7 IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVELEEVERHP-----VLVAAMELEPGTILSE 61 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122 L + +IDD Q L G +V I G+ + +L G G L+ Sbjct: 62 KHLSTKLMEVD-----WIDDETLKVKEQAL-GRIVANTIYAGELVNPHRLALPGEGATLA 115 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDH 181 +L+P+ KRA T+ ++ V G + P + VDV+ S + K T VL NI V+A+D Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQ 175 Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + D + ++ TLE+TP +A+ L++A S + L LR+ Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN 217 >gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 299 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 112/244 (45%), Gaps = 33/244 (13%) Query: 6 LMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVT 62 ++GI V G ++ A ++ + +T + P K F ++++ L GM + Sbjct: 1 MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL------VRVPILKGDPIRLEKLVD- 115 L + +P++++ G A +DG+L V PI +P+ L KL Sbjct: 61 RTKLIEIPWPQDSLPQG---------AFATIDGLLGEGGRVVLSPIEVNEPVLLTKLSGP 111 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------- 165 G LS++L G RA T+ + VGG + P D VDVV+ R E + Sbjct: 112 NGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAG 171 Query: 166 ---TVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 T +V+++ +V+++ D + + ++ TLE+T A+ + A++V LSL LR Sbjct: 172 STITSEIVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLR 231 Query: 222 SIAD 225 S ++ Sbjct: 232 SASE 235 >gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 272 Score = 62.0 bits (149), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 112/247 (45%), Gaps = 24/247 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVL--ISKGDLAV 57 MK + L+ I V+ V AL AG + R++ +P T P K +V+ ++ D+ Sbjct: 1 MKKSSLIQIAVALVLALGAGALVFRMMQAPAR-------TAQPPKVASVMLAVAAADMTK 53 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G + + F + G ++ EL G ++ + G+PI +LV+ Sbjct: 54 GTRIRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDT 107 Query: 118 --NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLS 172 GG+S+++ GKRA + + + G I+P +HVDV++ + R K VL Sbjct: 108 VRYGGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLE 167 Query: 173 NIRVIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 NIRV+A ++ D TLE+ P + + L A S ++ LR+ AD + Sbjct: 168 NIRVLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSV 227 Query: 230 SSEDSDV 236 + +DV Sbjct: 228 KTAGTDV 234 >gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 289 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 57/232 (24%), Positives = 117/232 (50%), Gaps = 18/232 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 +TR + + AL+ G +A +++ ++++ + + P + + + + DL +G + Sbjct: 1 MTRPSAMTTVTIIALLLGGLAT-IMANNYLKKQ---ADKPYEGVPIASAAVDLPLGSKLN 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120 ++ +P++ + G D ++P L G +V P+ G+ I KL+ + G Sbjct: 57 ATQVKLATWPKDALPAGGYQD-YKP-----LVGRIVVRPLSAGEVITENKLMPLNSSGGI 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 ++ ++P G RA T+ ++ + V G I PN VDV++ S +ER ++L N+ V Sbjct: 111 MTYMVPDGHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPV 170 Query: 177 IAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +A + E + V T TL++TP++A+ L+ L L+LR++ D+ Sbjct: 171 LATGQVTEQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDV 222 >gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] Length = 273 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 114/232 (49%), Gaps = 21/232 (9%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ I +S + AL G++ S T++ + A+ + V+++ DL G+ +TP + Sbjct: 8 LIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLTPAM 64 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSS 123 LE F ++ G +P LDG ++ V + + + KL D GG+S+ Sbjct: 65 LETRQFTPDSRPSGAF---GEPGL---LDGRVLGVAVGANEAVTEAKLADASVIGGGVSA 118 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIA 178 L+ GKRA ++ + + G ++P D VDV++ SL ++ +P +VL ++V+A Sbjct: 119 LIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIV--SLVQGRGNQEEPVTKLVLERVKVLA 176 Query: 179 IDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + D++ + TLELTP +++ L A + L+ LR+ D + Sbjct: 177 TGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTD 228 >gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] Length = 270 Score = 61.6 bits (148), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 47/159 (29%), Positives = 89/159 (55%), Gaps = 12/159 (7%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148 +E +G++V+ + G+ +R E+++ +G G L+SL+ RA T+ ++ V G + P Sbjct: 78 FEEAEGMVVKHNLYTGEILRSERIIKKGEGSTLASLISPNMRAVTIRVNDVVGVAGFLLP 137 Query: 149 NDHVDVVMVRSLSERKPTVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205 + VDV+ +L ++ + +VL+N++++AID +DE + + TLEL+ QA+ Sbjct: 138 GNRVDVL---NLFKKDGALHTDIVLANVKILAIDQRSSNDENKPKLVRAVTLELSLEQAE 194 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A+ KL L LR NP+ S + ++ + E K Sbjct: 195 ILLIAKGRGKLQLALR-----NPNDSAEVELALINETEK 228 >gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] Length = 286 Score = 61.2 bits (147), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 61/235 (25%), Positives = 114/235 (48%), Gaps = 15/235 (6%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 + V+ +F L A +A R + + E+ + + +++K DLAVG +T +++ Sbjct: 12 LAVASLFGLGAAWLAARYLE---ERATEIELRQQGQMGHAVVAKTDLAVGTPLTRDLVAV 68 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 P E + I P + G ++ P G+P+ +L +R LS+ L G Sbjct: 69 REVPVEWLHSSAI----TPEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLSAQLAPG 124 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE- 187 +RA T+ + +S++ G+++P D +D++ T+ +L +RV+A E Sbjct: 125 RRATTIPVDETSSLSGLLRPGDRIDLLATVQRDHHHLTLP-LLQGVRVLATGSRTRPGED 183 Query: 188 ----RVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +L GS T TL+L+ +A LVAA+++A+L+ VLR D + + +D Sbjct: 184 DGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTDA 238 >gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] Length = 274 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 49/185 (26%), Positives = 91/185 (49%), Gaps = 8/185 (4%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENV-FDGF--IDDVHQPNAMQELDGVLVRVPI 102 + +++ L G +TP+ ++ + +P E+V F F +D++ P+ +E ++R+ + Sbjct: 45 VELIVVSRQLRYGEQITPDDVQLIRWPAEHVPFGAFTTMDELFPPD--EEGARTVLRM-M 101 Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + +PI L K+ G + G++S L G RA + + ++S V G ++P D VDV Sbjct: 102 EQDEPILLVKVTAPGEDAGVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGR 161 Query: 162 ERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ +N+++IAID D + T T+ P AL AQ L+L L Sbjct: 162 NGDTVTRLIRANVQLIAIDQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLAL 221 Query: 221 RSIAD 225 + D Sbjct: 222 VGVGD 226 >gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] Length = 279 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 2/133 (1%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPND 150 EL G +V I G+ + + G G L++L+P+ KRA T+ + V G + P + Sbjct: 114 ELVGKVVANTIYAGEVLHKMRFTIPGEGSTLAALIPENKRAVTIRVDDVIGVAGFLLPGN 173 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVA 209 VD++ S S+ VL +I+V+A+D ++E ++ TLE++P A+ L+ Sbjct: 174 KVDILSTVSYSKNSAATRTVLKDIKVLAVDQTAKTNENSPIIVRAVTLEVSPKDAEKLLT 233 Query: 210 AQSVAKLSLVLRS 222 A+S + L LR+ Sbjct: 234 AKSKGSIQLTLRN 246 >gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 363 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 88/169 (52%), Gaps = 13/169 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 N+ ++ D+ + ++P +++ +P++ V +G + + ++E++ RV + G+ Sbjct: 26 NIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAVTN------LEEIENRRPRVRLYAGE 79 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERK 164 PI KL + G S ++PKG R ++ ++ ++ G+I P D VDV V +R+ Sbjct: 80 PILERKLFGSNEDKGASKMIPKGFRVHSVRVTAETSASGLILPGDRVDVLVYLRNSGSIN 139 Query: 165 PTVT-VVLSNIRVIAIDHN----IDSDERVLVGSTATLELTPMQAKALV 208 T+T +L N+RV A++ DS+ + T +L + P Q + L+ Sbjct: 140 KTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKTVSLLVKPSQVEVLM 188 >gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 264 Score = 60.8 bits (146), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 99/197 (50%), Gaps = 15/197 (7%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 P + + S + +G ++ ++ PE D + D P+ E+ G++ + Sbjct: 35 PENQVYIAFSTMVIPIGTIIEAKHIKLKILPESMSPDNTVTD---PD---EIYGMIAKDT 88 Query: 102 ILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I D IRLE+L+ +G G L+SL+ + RA ++ + V G + P + +D++ S Sbjct: 89 IYIDDIIRLERLLIKGQGSTLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSG 148 Query: 161 SERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + V+L NI+++AID ID ++ LV + T+E+ QA+ L+ A++ +L L Sbjct: 149 NGGATSTEVILHNIKILAIDQRAAIDENKPQLVRAI-TVEVNLEQAEILMTARNQGRLQL 207 Query: 219 VLRSIADLNPSSSEDSD 235 LR NP+ S D Sbjct: 208 ALR-----NPTDSHAVD 219 >gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 293 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 65/246 (26%), Positives = 112/246 (45%), Gaps = 31/246 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + +F V GI + L ++ + + + VL+ + +G Sbjct: 1 MTAKRLMLL---SLFCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPN--AMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 TPN W P++ + +ID V + A + G L R ++K D I + + Sbjct: 58 YTPNSFRWKEVPQQE-LENYIDHVTPEDISADHTMSG-LARTKLVK-DSILSKADITEPE 114 Query: 119 GG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------SERKPTV 167 GG LS L G RA ++ + ++ G I+P D VD++++ S S + V Sbjct: 115 GGYSLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYV 174 Query: 168 TVVLSNIRVIAIDHNI---------DSDERVLV---GSTATLELTPMQAKALVAAQSVAK 215 T ++ + RV+A + +S++ V S+ +LE+TP QA +V A+ + K Sbjct: 175 TTIVHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGK 234 Query: 216 LSLVLR 221 L+LVLR Sbjct: 235 LTLVLR 240 >gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] Length = 295 Score = 60.5 bits (145), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 62/257 (24%), Positives = 119/257 (46%), Gaps = 24/257 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGM 59 +L L+ I ++ V A+ + + + T E E V+++ D++ G Sbjct: 3 RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117 +T +L+ + ++N+ G D Q L G + P K +PI +L D Sbjct: 63 QLTEEMLQTGQYLKKNLPPGSFTDPDQ------LLGRVALAPFKKNEPIVDHRLAPTDIK 116 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRV 176 +GG+S+L+ KG RA ++ + + G + P VDV++ + + +T +L N+++ Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176 Query: 177 IAIDHNIDSDERVLVGSTA-----TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP--- 228 +A + E G TA TLE+TP +A+ L ++ L + LR+ D P Sbjct: 177 LATSTKMQETES---GGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMT 233 Query: 229 --SSSEDSDVWDVQEEG 243 ++++DS + ++E G Sbjct: 234 DGATAKDSMAYMLKENG 250 >gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] Length = 236 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/157 (29%), Positives = 79/157 (50%), Gaps = 18/157 (11%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + +VP+ +G+ + KL RG+G GL+ LP+G RA T+ AVGG ++P D V Sbjct: 84 GKVTKVPLAEGEFVLASKLA-RGDGTDGLAYRLPEGTRALTVAADPVIAVGGFVQPGDRV 142 Query: 153 DVVMVRSLSE---RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA-------TLELTPM 202 DV + + +P V +++ N+ V+A+ ++ G A TL ++P Sbjct: 143 DVFIGLPGGQPGVAQPEVRLLVENVLVLAVQQQTAAE-----GQPAGEGLTHLTLAVSPA 197 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 A A+V A+ +L L LR D P+ + + D+ Sbjct: 198 HAAAIVLAEQEGRLRLALRPAGDDTPAGPITARLADL 234 >gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] Length = 349 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 66/259 (25%), Positives = 123/259 (47%), Gaps = 31/259 (11%) Query: 14 VFALVAGIIAM---RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V A+ G++AM R V Q EV K NVL++ ++ G + + +++ + Sbjct: 4 VIAVGCGLVAMLGVRQVLNKDDQQAEV------KTANVLMTIAEIPPGTPLNESNVKFKS 57 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 +P + V +G + +++ ++ + G+ + KL ++G G S +P GKR Sbjct: 58 WPIDQVPEGAV------TKLEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIPDGKR 111 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVT-VVLSNIRVIAIDHNID 184 T + ++ G+I P D VDV + + + RKP T+T V+L +++ A DH D Sbjct: 112 VFTTSVDMTKTHSGLILPGDFVDVYV--TFTARKPEGGMSTITKVILERVKIFATDHLTD 169 Query: 185 ---SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 ++ + +L L+P + L A+ ++ L LR+ +D S++ DV + Sbjct: 170 VGGTESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFDDD 225 Query: 242 EGKEIQIIKAGVIVNKDGE 260 E E+ I+ + KDGE Sbjct: 226 ELAEVFSIEGSEYL-KDGE 243 >gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] Length = 251 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 63/222 (28%), Positives = 113/222 (50%), Gaps = 16/222 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63 +M +++S VF L A +IA + + + T E+ + +P VL++ +L G Sbjct: 7 VMLLLLSIVFGLAAVLIAKQWIDGQNQPTVELEEVERHP-----VLVAAMELEPG----- 56 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122 ILE + + +I++ + Q L G +V I G+ + +L G G L+ Sbjct: 57 TILEEKHLTTKLMEVDWIEESTLKVSEQAL-GRIVANTIYSGEMVNPNRLALPGEGATLA 115 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDH 181 +L+P+ KRA T+ ++ V G + P + VD++ S + K T VL NI+V+A+D Sbjct: 116 ALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAVDQ 175 Query: 182 NIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + D + ++ TLE+TP +A+ L++ S K+ L LR+ Sbjct: 176 TAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN 217 >gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] Length = 315 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 72/277 (25%), Positives = 119/277 (42%), Gaps = 51/277 (18%) Query: 9 IVVSG--VFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 VSG +FAL ++ L++ P +V+ + P + VL++ L G + Sbjct: 7 FFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKP-NYRAVLVASNTLRPGDFMNAT 65 Query: 65 ILEWVA----FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +EW A +PE+ F +D+ Q L G V PI G + + LV G G Sbjct: 66 SIEWRAADKQYPEDAFFLKGLDEKSQ------LYGATVTQPIPAGTELESDLLVSPGEPG 119 Query: 121 L-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----VRSLSERKPTVTV----- 169 +S+L G RA + + ++ G+I D VDV++ ++ P T+ Sbjct: 120 FIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPKL 179 Query: 170 ----VLSNIRVIAIDHNI------------------DSDERVLVGSTATLELTPMQAKAL 207 +L N+RV++++ + DS++R T TLE+ P + L Sbjct: 180 ASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSY-ETVTLEVLPKDVERL 238 Query: 208 VAAQSVAKLSLVLRSI--ADLNPSSSEDSDVWDVQEE 242 A+ V L L LRS+ DL S+S + D + Q E Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEKDSKESQSE 275 >gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6] gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6] Length = 285 Score = 60.1 bits (144), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 67/247 (27%), Positives = 118/247 (47%), Gaps = 23/247 (9%) Query: 6 LMGIVVSGVFALVAGIIAM--RLVSPHHV-------QTEEVITENPAKFINVLISKGDLA 56 + G+V+ AL G + M + +S H EVI P I V + + L Sbjct: 4 VFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVI---PTTEIYVAVKQ--LK 58 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILKGDPIRLEKLV 114 G +T ++ V +P E++ +G + + P A V++R+ I + I K+ Sbjct: 59 YGERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRM-IEPNEAILAVKVT 117 Query: 115 DRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVT-V 169 G + G++S L +G RA + + ++S V G ++P D VDV + R S + +T + Sbjct: 118 KPGEDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRL 177 Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 + S+I +IA+D + +D ++ T T+ + P Q AL AQ+ +LSL L D Sbjct: 178 IESSIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTV 237 Query: 229 SSSEDSD 235 +S+ + D Sbjct: 238 ASAIEVD 244 >gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 249 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 69/134 (51%), Gaps = 2/134 (1%) Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149 +EL G +V I G+ + + G G L++L+P+ KRA T+ + V G + P Sbjct: 83 EELIGKVVANTIYAGEVLHKLRFTVPGEGSTLAALIPENKRAVTIRVDDVIGVAGFLLPG 142 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALV 208 + VD++ S + VL +I+V+A+D + E ++ TLE+TP A+ L+ Sbjct: 143 NKVDILNTVSYGKNSAATQTVLKDIKVLAVDQTARTKENSPIIVRAVTLEVTPKDAEKLL 202 Query: 209 AAQSVAKLSLVLRS 222 A+S + L LR+ Sbjct: 203 TAKSKGSIQLTLRN 216 >gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 260 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 43/140 (30%), Positives = 73/140 (52%), Gaps = 10/140 (7%) Query: 102 ILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I G+PI ++ G L++ LP G A ++ IS + V G ++P D VD+++ R + Sbjct: 58 IAAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQI 117 Query: 161 -----SERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVA 214 ++ V+L + V+ ID D S +VG TAT+++ + A+ L A+ + Sbjct: 118 PGEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALARELG 177 Query: 215 KLSLVLRSIA---DLNPSSS 231 LSL LRS+A D P+ + Sbjct: 178 TLSLGLRSLASVEDTGPTRT 197 >gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 249 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 41/146 (28%), Positives = 75/146 (51%), Gaps = 4/146 (2%) Query: 81 IDDVHQPNAMQELD--GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDIS 137 +D +++ N + D G +V I G+ + + G G L++L+P+ KRA T+ + Sbjct: 71 VDWINENNYSDKADLIGKVVANTIYAGEVLHKLRFTVPGEGSTLAALIPENKRAVTIRVD 130 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTAT 196 V G + P + VD++ S + VL +I+V+A+D + E ++ T Sbjct: 131 DVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLAVDQTAKTKENSPIIVRAVT 190 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222 LE+TP +A+ L+ A+S + L LR+ Sbjct: 191 LEMTPKEAEKLLTAKSKGSIQLTLRN 216 >gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] Length = 294 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 65/223 (29%), Positives = 106/223 (47%), Gaps = 42/223 (18%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEEN---VFDGFIDDVHQPNAMQELDGVLV-----R 99 L +K + G ++ WV E+ + D F+++ Q +A L+G L+ Sbjct: 52 ALAAKYPVQAGALLRAQDFHWVELGSEHNASLNDLFLENFSQLDA---LEGSLITRHQDE 108 Query: 100 VPILK-GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-- 156 +L D IR E+ + +S++L GKRA T++++ + G+++P + VDVV+ Sbjct: 109 SQLLNVNDIIRPEQ-----SHYVSAMLAPGKRAVTLELTQAGVSHGLLRPGNWVDVVLTN 163 Query: 157 ---VRSLSERKPTVTVVLSNIRVIAIDH---------------NIDSDERVLVGSTATLE 198 V S S K T VL +R++AI N +S E V V T E Sbjct: 164 ESNVESASTPKYAATTVLEGVRLLAIGSVVTEFIAKQSVENGANPNSYEPVRV----TFE 219 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV-WDVQ 240 ++P AK L+ AQ + LSLVLRS + + + E+ + WD Q Sbjct: 220 VSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEGSILWDEQ 262 >gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5] gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5] gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] Length = 275 Score = 59.7 bits (143), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 15/191 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K + +L + LA G ++ P P V + D P G +VR + Sbjct: 37 KMVALLATGRPLAPGTLLQPADFVAENRPPSKVPADAVPDT--PANRAAYTGAMVRHRLS 94 Query: 104 KGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 GD + + ++ G+ G L+++L G RA ++ + + G+I P DHVD+++ + L+ Sbjct: 95 AGDLLATDIVIRPGDHGFLAAVLQPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTG 154 Query: 163 RK--PTVTV----VLSNIRVIAIDHNI---DSDERVLVGSTA---TLELTPMQAKALVAA 210 PT V VLS++RVIAID + S +TA TLE+TP QA+ + A Sbjct: 155 ANLLPTQRVAAETVLSDVRVIAIDQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVA 214 Query: 211 QSVAKLSLVLR 221 + LSL++R Sbjct: 215 AHLGPLSLIVR 225 >gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193] gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193] Length = 286 Score = 59.7 bits (143), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 94/190 (49%), Gaps = 14/190 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVPIL 103 +V ++ L G +T + + V +P + + +G ++ + P +L VL + Sbjct: 49 DVFVATKQLKYGERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDLRVVLR---TM 105 Query: 104 KGDPIRLE-KLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + D LE KL + G + G++S L +G RA + + +SS V G ++P DHVDV + Sbjct: 106 EKDEALLEAKLTNPGQDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVR 165 Query: 162 E----RKPTVTVVLS-NIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAK 215 + R +T ++ +I +IA+D + ++ + T T+ + P Q AL AQ+ + Sbjct: 166 DGSGGRGQEITRLIEPSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGR 225 Query: 216 LSLVLRSIAD 225 LSL L D Sbjct: 226 LSLSLVGAGD 235 >gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 295 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/210 (25%), Positives = 99/210 (47%), Gaps = 18/210 (8%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 L++ + +Q P + V+++ D+ V+T +++ F +E++ +G+ D Sbjct: 22 LLAYNWIQKTATAKAKPQEMQKVVVAAFDVPWSTVLTKDMVRTATFLKESLPNGYYLDPA 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVG 143 Q + G V PI +PI +L GG+++++ KRA ++ + V Sbjct: 82 Q------IVGRTVIQPIRTNEPITEARLAPTSIRTGGVAAVITPSKRAMSVKVDKVVGVS 135 Query: 144 GMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDHNIDSD---ERVLVGSTA 195 G I P + VDV++ +L+E++ P +VL NI V+A + E+ Sbjct: 136 GYIHPGNRVDVLV--TLNEQRGEVTAPVTKIVLENILVLASGPEFNETKKGEKPANVDVI 193 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 TLE+TP + + L A + K+ L LR+ D Sbjct: 194 TLEVTPEEGEKLALASTEGKIQLALRNFGD 223 >gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 56/219 (25%), Positives = 101/219 (46%), Gaps = 24/219 (10%) Query: 28 SPHHVQTEEVITENPA------KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 S +EE + PA +F ++++ L GM + L + + +E+V G Sbjct: 22 SQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGMELDRAQLSEIPWSQESVPQGAF 81 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISS 140 + NA+ +V PI +P+ L KL G LS+++ G RA T+ + Sbjct: 82 TTI---NALLADGSRVVLSPIEVNEPVLLTKLSGPNGRATLSNMMTPGMRAVTIRTDEIA 138 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP-------------TVTVVLSNIRVIAIDHNIDSDE 187 VGG + P D VDVV+ R E + T +V+++ +V+++ D + Sbjct: 139 GVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSEIVVADAKVLSVGQGADERQ 198 Query: 188 RV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + ++ T+E+T A+ + A++V LSL LRS ++ Sbjct: 199 TTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237 >gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM] gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM] Length = 281 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 53/194 (27%), Positives = 94/194 (48%), Gaps = 16/194 (8%) Query: 41 NPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVL 97 PA K ++V ++K LA G +T + V +P + +G V P +E VL Sbjct: 34 QPAIKTVDVYVAKRALAYGDRLTKEDVVQVKYPARALPEGVFQTVEDLFPEGQKEFRTVL 93 Query: 98 VRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 + K + + K+ G + G+ + L +GKRA + + +S V G ++P D VDV Sbjct: 94 R--AMEKYEALLGVKVTAPGEDAGILTKLERGKRAFAIKVDTTSGVAGFLRPGDRVDVYW 151 Query: 157 --------VRSLSERKPTVT-VVLSNIRVIAIDHNI-DSDERVLVGSTATLELTPMQAKA 206 +R+ + VT ++L+ + +IA+D + D ++ T T+ ++P + A Sbjct: 152 TGNTGRGGLRTEGDSTGDVTKLILTGVNLIAVDQSSNDQTTGAILARTVTVAVSPQEVAA 211 Query: 207 LVAAQSVAKLSLVL 220 L AQ+ KL+L L Sbjct: 212 LAQAQATGKLTLSL 225 >gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] Length = 274 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 47/150 (31%), Positives = 81/150 (54%), Gaps = 8/150 (5%) Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G++V+ + G+ +R E++ +G G L+SL+ RA T+ ++ V G + P + V Sbjct: 82 EGMVVKQNLYAGEVLRSERITVKGEGSTLASLISPQMRAVTIRVNDVVGVAGFLLPGNRV 141 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQ 211 DV+ + R T VVL+N++++AID +DE + + TLEL QA+ L+ A+ Sbjct: 142 DVLNLFKRGGRLQT-DVVLANVKILAIDQRSSNDENKPKLVRAVTLELNLEQAEVLMIAK 200 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 KL L LR NP+ S ++ + E Sbjct: 201 GRGKLQLALR-----NPNDSTKVELALINE 225 >gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] Length = 290 Score = 59.3 bits (142), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 108/233 (46%), Gaps = 28/233 (12%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKF---------------------INVLISK 52 VF LV II + L E IT+N AK ++VL+S Sbjct: 4 VFGLVL-IIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLVSN 62 Query: 53 GDLAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 L G +T + V +PE + +G F++ ++ + ++R + K + I Sbjct: 63 RSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRA-MEKDEAIMAV 121 Query: 112 KLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT- 168 K+ G GL S LPKG RA + + ++S V G ++P D VDV ++ SE + +T Sbjct: 122 KVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEITR 181 Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +VL+NI ++A+D D + T T+ TP Q AL AQ+ ++SL L Sbjct: 182 LVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLAL 234 >gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] Length = 249 Score = 58.9 bits (141), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 57/221 (25%), Positives = 97/221 (43%), Gaps = 15/221 (6%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVGMVVTP 63 + ++S VF L A A + + T EV + +P + I G + +T Sbjct: 7 FLLFLLSVVFGLAAVFFAKQWMDNQVQPTIEVEEVERHPVVVASQEIEAGTVIEDQYLTT 66 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122 ++E E N D EL G +V I G+ + + G G L+ Sbjct: 67 KLMEVDWINENNYSD-----------QNELIGKVVANTIYAGEVLHKLRFTVPGEGSTLA 115 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 +L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A+D Sbjct: 116 ALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLAVDQT 175 Query: 183 IDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + E ++ TLE+TP A+ L+ A+S + L LR+ Sbjct: 176 ARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRN 216 >gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1] gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1] Length = 286 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 60/229 (26%), Positives = 109/229 (47%), Gaps = 25/229 (10%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + GV A +A ++++ + +E + P + + V+++K D+ +T ++ Sbjct: 1 MKLSTKGVLA-IALVLSLATTGLIYKYLQEATQKTPQEGVVVVVAKVDIPPKTKITAEMV 59 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVRVPILKGDPIRLEKLVDRG-NGGLS 122 P E V QP A++EL G + R I+ G+ I +LV +G + G + Sbjct: 60 ATAKVPAEYV---------QPGAVRELKTAVGAIAREHIVAGEQIAERRLVIQGKSAGFT 110 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDH 181 ++P KRA T+ ++ + V G +KP D+VDVV + V+ ++L N+ V+A + Sbjct: 111 GIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLAANR 170 Query: 182 NI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + D E + +T TL +TP + L A+ K+ L LR Sbjct: 171 DAEAGAADGAKDKKEAIKT-ATVTLAVTPDEVAQLALAEDKGKVRLALR 218 >gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099] gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099] Length = 308 Score = 58.9 bits (141), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 55/203 (27%), Positives = 98/203 (48%), Gaps = 30/203 (14%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL------ 97 +F ++++K L G + L + +P++++ G A +DG+L Sbjct: 51 EFKTIVVAKAPLRYGQELDRAKLIEIPWPQDSLPQG---------AFATIDGLLGEGNRI 101 Query: 98 VRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 V PI +P+ L KL G LS++L G RA T+ + VGG + P D VDVV+ Sbjct: 102 VLSPIEVNEPVLLTKLSGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVL 161 Query: 157 VRSLSERK-----------PTVT--VVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPM 202 R E + TVT +V+++ +V+++ D + + ++ T+E+T Sbjct: 162 TRDAGEIQEVAKNAQGAAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTE 221 Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225 A+ + A++V LSL LRS ++ Sbjct: 222 GAQKVALARTVGTLSLSLRSASE 244 >gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1] gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 309 Score = 58.9 bits (141), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 62/233 (26%), Positives = 103/233 (44%), Gaps = 27/233 (11%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E + PA VL++ +A+G ++ + W V G++ A E Sbjct: 38 ERSVESRPA----VLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLMRGQVSEA--EFL 91 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + R + +P+ + V G+ L+++L G RA ++ + + + GM P D VD Sbjct: 92 GAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQSAAGMALPGDRVD 151 Query: 154 VVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDERVL--------VGSTATLEL 199 V++ +S E RK +L ++RVIAID ++ V + T TLEL Sbjct: 152 VILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAISTEARIPKTVTLEL 211 Query: 200 TPMQAKALVAAQSVAKLSLV---LRSIADLNP-SSSEDSDVW--DVQEEGKEI 246 QA+AL+ A + K L L +A +P +E VW DV +E+ Sbjct: 212 LERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSPALREV 264 >gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] Length = 291 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 58/235 (24%), Positives = 107/235 (45%), Gaps = 22/235 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMV 60 L ++G+ ++G+ A +A + +S V+ + ++ E N + ++V++ + LA G Sbjct: 7 LVLVLGVALAGL----AVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYGER 62 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP------------I 108 T L + ++ G V P E P + P I Sbjct: 63 FTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYEAI 122 Query: 109 RLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 K+ G + G+++ L RA T+ + ++ V G ++P D VDV ++ + T Sbjct: 123 LANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGERVT- 181 Query: 168 TVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ +N+R+IAID + D+D E + T T E+TP Q +L AQ +L+L L Sbjct: 182 KLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSL 236 >gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 274 Score = 58.5 bits (140), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 56/233 (24%), Positives = 108/233 (46%), Gaps = 17/233 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + L+ I ++ V ALVAG++ R + + ++ + + + ++ D+ G Sbjct: 1 MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQMAAP---EQVELAVAAADVPRGAK 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + ++ F + + G P G ++ + G+PI +L+ G + Sbjct: 58 LAAEQIKLAPFLKSSAPSGAFTKDTLPV------GRVLSSAVAAGEPITEARLLQDGASH 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIR 175 GG+S+L+ G RA + + + G I+P + VDV++ + + K +VL N+R Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171 Query: 176 VIAIDHNIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V+A + + S+ TLE++P QA+ L A S +L LR+ AD Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPAD 224 >gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516] gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516] Length = 281 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 91/191 (47%), Gaps = 7/191 (3%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQE 92 E + + V + G +TP+ + V + E + DG + P + Sbjct: 37 ERAVAAQATPTVEVYAVTRQIGYGEQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQ 96 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L VL P+ +P+ K+ + G + G++S L +G RA + + ++S V G ++P D Sbjct: 97 LRVVLR--PMEVNEPVLAVKVTEPGEDAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDK 154 Query: 152 VDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVA 209 VD+ S VT ++ SN+ +IAID + D S + T T+E+TP Q AL Sbjct: 155 VDIYWTGRNSRGGEEVTKLIESNVNLIAIDQSADGSALNTTIARTVTVEITPQQVAALAQ 214 Query: 210 AQSVAKLSLVL 220 AQS +LSL L Sbjct: 215 AQSTGRLSLSL 225 >gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] Length = 338 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 64/119 (53%), Gaps = 16/119 (13%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175 L+++L G+RA ++ + + + G++ P D+VDV++ + + R+ VL N+R Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181 Query: 176 VIAIDHNIDSD-----ERVLVGS------TATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VIA+D ++D+ E +G+ T TLE+ QA+ L+ A + K L +R + Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPL 240 >gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis] gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis] Length = 302 Score = 58.5 bits (140), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 27/224 (12%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 L+A I+ + S H + V T + + +S DL G+++ + L W P NV Sbjct: 16 LIALIVRTVVASISHPAAQAVST------VKIRVSAADLPQGLLLRDDDLAWKDVPAGNV 69 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMD 135 I + PNA+ EL G L+R G + + ++ G L++ L RA ++ Sbjct: 70 PAAAIV-ANAPNAI-ELKGALLRHAAAAGTVLGPDDVILPSAPGFLAATLKPDMRAVSVA 127 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTV----VLSNIRVIAIDHNI------ 183 I S G+I+P D+VD+++ + + R P + V V+ +RV+A+ + Sbjct: 128 IDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVRVLAVGSELSRPKTS 187 Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 D++ R T TLE+TP A+ + A + LS LRS A Sbjct: 188 DAPDANNR---ARTVTLEVTPHMAEVVSVAARLGSLSFALRSFA 228 >gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] Length = 300 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 65/248 (26%), Positives = 115/248 (46%), Gaps = 20/248 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59 MK + I+++ + AL AG++ +R + V+ +V PA + V+++ + G Sbjct: 1 MKTKAVPHIILAVILALTAGVLTIRWLG--SVRAPKVEQAKPAAPKVEVVVAARAIPKGG 58 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117 + ++++ F E G + DV QE G + I DPI +KL+ +G Sbjct: 59 RLDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGAT 112 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNI 174 +GGL + + GKRA T+ S GG+I P VDV++ + K ++L N+ Sbjct: 113 SGGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENV 172 Query: 175 RVIAI----DHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 ++ + I D R + +T TL + P +A+ L A L L LR+ D + Sbjct: 173 PILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADI 232 Query: 229 SSSEDSDV 236 ++ +DV Sbjct: 233 VTTSGADV 240 >gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] Length = 278 Score = 58.5 bits (140), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 58/216 (26%), Positives = 108/216 (50%), Gaps = 13/216 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 +E + E P +V+++K ++ +T + ++ P+E V + + Q L Sbjct: 30 QEAVKEQPK--ASVVVAKQNIEPREQITRSKVQLKQVPQETVHSQAVTSISQAVEKFALK 87 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 ++ +LK + E++ + GL+ L KRA T+ ++ S V G + P D+VDV Sbjct: 88 DIISGEQLLKPRLLGKEEV----SSGLAFNLADDKRAVTVPVTEVSGVAGFLTPGDYVDV 143 Query: 155 VMVRSLSERKPTVT-VVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQ 211 V V S E + TV VL ++V+A+ ++ + D++ V + TL + +A+ LV A Sbjct: 144 VSVFSTYEAQQTVAKTVLQKVKVLAVAQDMVRERDQKPKVTKSVTLGVGLAEAEKLVLAD 203 Query: 212 SVAKLSLVLRSIADLNPSSSE----DSDVWDVQEEG 243 ++ LVLRS + + S S + V +++EEG Sbjct: 204 RKGEIRLVLRSAQNESFSMSNGVKFEELVGNLEEEG 239 >gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 279 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 61/248 (24%), Positives = 118/248 (47%), Gaps = 29/248 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGM 59 M RLM ++S + + V IA+ L++P Q+E+ + A+ F VL++K + VG Sbjct: 1 MTAKRLM--LLSLILSAVG--IAILLLNPSKPQSEQ--RQAAAEVFKRVLVAKQGVVVGQ 54 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGN 118 T N+ +W + E+ + + ++D + + + +L + I G + + + Sbjct: 55 PYTLNMFQWKSVSEQEL-NNYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPAS 113 Query: 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVT 168 G ++ + G RA ++ + +A G ++P D VD++++ S E VT Sbjct: 114 GISMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVT 173 Query: 169 VVLSNIRVIAIDHNIDSDE----RVLVG------STATLELTPMQAKALVAAQSVAKLSL 218 + ++RV+A + D + R G S+ +LE+TP QA +V A + KL+L Sbjct: 174 TIAIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTL 233 Query: 219 VLRSIADL 226 LR ++ Sbjct: 234 SLRGAGEM 241 >gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] Length = 242 Score = 58.2 bits (139), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 49/195 (25%), Positives = 93/195 (47%), Gaps = 20/195 (10%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F V +++ + +T ++E P + +I+++ + +E+ G + + IL Sbjct: 38 FTRVAVARQRITARTRITAQMIELKDIPAK-----YINELAAVSP-EEIVGKIAKSEILP 91 Query: 105 GDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160 G+ I ++L + GL+ +L GKRA T+ ++ S + G+IKP D VDVV L Sbjct: 92 GEQILRDRLAQGSSATDGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQG 151 Query: 161 ---SERKPTVTVVLSNIRVIAIDH-------NIDSDERVLVGSTATLELTPMQAKALVAA 210 E+ ++++ ++ V++ D N + ++ T TL +TP QA+ LV Sbjct: 152 APGQEKSSITSILIQDVDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLC 211 Query: 211 QSVAKLSLVLRSIAD 225 + L+LR D Sbjct: 212 SEKGTIRLILRPATD 226 >gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597] gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597] Length = 265 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 59/109 (54%), Gaps = 6/109 (5%) Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--ERKPT---VTVVLS 172 + GL+S L KG RA + + ++S V G ++P D VD+ +S +R + ++ + Sbjct: 99 DAGLTSRLEKGMRAFAIKVDVASGVSGFLRPGDKVDIYWTGRVSGMDRNASGEVTKLIET 158 Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 I++IA+D + D ++ T T+ + P Q AL AQS +L+L L Sbjct: 159 GIQLIAVDQMANGDHSEAMIARTVTVAVNPQQVGALAQAQSTGRLALSL 207 >gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] Length = 198 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 9/138 (6%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 E++G +V+V + I K+ G + GL+S L +G RA T+ + +SS V G ++P D Sbjct: 5 EVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLRPGD 64 Query: 151 HVDVVMV-------RSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPM 202 VDV +L ++ + +++IAID + + + T T+ + P Sbjct: 65 RVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAVKPS 124 Query: 203 QAKALVAAQSVAKLSLVL 220 Q AL AQS KLSL L Sbjct: 125 QVAALAQAQSTGKLSLSL 142 >gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] Length = 304 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 102/220 (46%), Gaps = 44/220 (20%) Query: 25 RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-F 80 RL++ + V+TEE V+ P +F + + S+ L + +P G F Sbjct: 33 RLLAMNGVKTEERTLVVAATPMRFGDRIRSEN------------LRAIPWPSNETPTGSF 80 Query: 81 I-------DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132 + +D AM +D G+P+ K+ G LS+ L +G +A Sbjct: 81 VSIDLVVGNDAQPRYAMAAID---------PGEPVLSSKITGAGERATLSAALDQGMKAV 131 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNID-- 184 ++ ++ V G ++P+D VDV++ R + R P V V+L ++V+A+D D Sbjct: 132 SIRVNDVLGVAGFVRPSDRVDVLLTRVV--RGPAGNDQTFVDVLLQGVKVLAVDQTADER 189 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 DE +V T T E+T +A+ L S+ LSL LR++A Sbjct: 190 KDEPSVV-KTVTFEVTTDEAQRLTLGSSIGTLSLALRNVA 228 >gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 271 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/184 (28%), Positives = 94/184 (51%), Gaps = 10/184 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +V+++ ++ G +V + V P + + D D Q G + IL+GD Sbjct: 41 SVVVATVEIPFGQMVEAQQVTTVRMPMDTIPDDAFDSSEQAV------GKIATFDILRGD 94 Query: 107 PIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +R +L + G L+SL+ KRA ++ + VGG + P + VDV+ ++ + Sbjct: 95 IVRGARLSEHLGGSTLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSN 154 Query: 166 TVT--VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + T +L N+RV+A+D +D+ + +V TLE++ +A+ LV AQ+ KL L LR+ Sbjct: 155 SATSRTLLENLRVLAVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRN 214 Query: 223 IADL 226 +L Sbjct: 215 PLNL 218 >gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3] gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3] Length = 305 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 61/237 (25%), Positives = 107/237 (45%), Gaps = 22/237 (9%) Query: 2 KLTRLMGIVVSGVFALVAG--IIAMRLVSPHHVQTEEVITENPAK-----FINVLISKGD 54 K+ + G+V+ AL G ++A +S + E+ E A+ V ++ Sbjct: 17 KMRAVFGLVLIVGIALAGGAVMMARNYISAYQ---NELARERQARAQIVPTKTVYVASRP 73 Query: 55 LAVGMVVTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G +T + V +PE + +G F+D QE + ++R + K + I K+ Sbjct: 74 LRYGERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRA-MEKDEAIMAIKV 132 Query: 114 VDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RK 164 G + GL+S L +G RA + + ++S V G ++P D VDV LS + Sbjct: 133 TKPGEDAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQG 192 Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ +NI+++AID D + T T+ P Q +L AQ+ +L+L L Sbjct: 193 EITRLIQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLAL 249 >gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 44/220 (20%) Query: 25 RLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-F 80 RL++ + V+ EE ++ P +F G + P L + +P G F Sbjct: 33 RLLAMNGVKAEERTLIVAAKPMRF------------GDRIRPENLRAIPWPSNETPAGSF 80 Query: 81 ID-------DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAA 132 + D AM +D G+P+ K+ G LS+ L +G +A Sbjct: 81 VSIETVVGSDAQPRYAMAAID---------PGEPVLSSKITGAGERATLSAALDQGMKAV 131 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNID-- 184 ++ ++ V G ++P+D VDV++ R + R P V V+L ++V+A+D D Sbjct: 132 SIRVNDVLGVAGFVRPSDRVDVLLTRVV--RGPAGNDQTFVDVLLQGVKVLAVDQTADER 189 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 DE +V T T E+T +A+ L S+ LSL LR+IA Sbjct: 190 KDEPSVV-KTVTFEVTTDEAQRLTLGSSIGTLSLALRNIA 228 >gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 57.4 bits (137), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 116/253 (45%), Gaps = 21/253 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59 M+ L+ IV++GVF G++A+ LV+ + + + V+++ L G Sbjct: 1 MRANTLIMIVLAGVF----GVLAVVLVNIWLAGQRSAMAQTGVVQGSTVVVAAMPLKFGD 56 Query: 60 VVTPNILEWVAFPEENV----FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 ++ + L VA+P V F D + A Q L + V PIL K+ Sbjct: 57 ALSADKLREVAWPAGAVPAGAFKSTKDLLAGDGAKQALQSIGVNEPILA------TKITG 110 Query: 116 RGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVV 170 G LS++L +G +A ++ ++ V G + P D VD+++ R+ K V V+ Sbjct: 111 PGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVL 170 Query: 171 LSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 L +++V+AID D S + V + TLE + A+ L A +LSL LR A Sbjct: 171 LQSMKVLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGE 230 Query: 230 SSEDSDVWDVQEE 242 ++E + D+ E Sbjct: 231 TTERVTLSDLTGE 243 >gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 418 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 64/223 (28%), Positives = 108/223 (48%), Gaps = 24/223 (10%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN----VLISKGDLAVGMVVTPNILEWV 69 FA+ G+IAM V +++I + K N VL++ D++ G+++ + Sbjct: 10 AFAVGCGLIAM-------VGVQQMIAQQSNKDQNQTVEVLVAAQDISPGVLLNQANCAFK 62 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P E V D V E G+LV P++ GD IR KL RG S+ +P G Sbjct: 63 KLPVEGVPS---DAVRSKEEYAER-GLLV--PVMAGDIIRKSKLGARGEIAASASIPAGM 116 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVT-VVLSNIRVIAID--HNI 183 R ++ ++ + G+++P D VD+ + VR+ + T T ++L I V A D N+ Sbjct: 117 RTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEVFASDAFRNL 176 Query: 184 DSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 ++ E + + TL +TP QA + A + +L ++RS AD Sbjct: 177 EAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRAD 219 >gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 57.0 bits (136), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 60/244 (24%), Positives = 113/244 (46%), Gaps = 34/244 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDLA 56 KL + G++VS + A+V +I + +S E E+ E+ + V+++ +L Sbjct: 3 KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQ---VAVVVATSNLD 59 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-- 114 G ++T + L+ PE+ + D +E+ G +LK D + E L+ Sbjct: 60 TGTILTQDHLDTRKVPEQTAHPQAVTD------KEEITG-----EVLKQDVVEHEVLMSS 108 Query: 115 ----DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------ 164 + LS ++P+ KRA ++ + S V G I+ D+VDVV + +R+ Sbjct: 109 RVLGEEEANKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQ 168 Query: 165 -PTVTVVLSNIRVIAIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLR 221 + ++L N++V+A+ I + LV ST TL + +A L A+ + L+L+ Sbjct: 169 DSSSEIILDNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQ 228 Query: 222 SIAD 225 I + Sbjct: 229 PITE 232 >gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] Length = 284 Score = 56.6 bits (135), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 6/123 (4%) Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 K +P+ K+ + G + GL++ L KG RA + + +S V G + P D+VDV + ++ Sbjct: 106 KFEPLLAVKVTEPGQDAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTAND 165 Query: 163 R---KPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 ++ S I++IA+D N D +V +T T+E +P + L AQ+ KL+ Sbjct: 166 AGVGGEMTRLIESTIKIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLA 225 Query: 218 LVL 220 L L Sbjct: 226 LSL 228 >gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] Length = 270 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 93/191 (48%), Gaps = 12/191 (6%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 + V+++ D+ G V++ ++ + PE+ V + +P++ + V VP+ Sbjct: 39 LVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVV----KPDSANYVVNQKVLVPLQA 94 Query: 105 GDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSE 162 GDP+ + + LS+ + K RA T++ +++VGG I+PNDHVDV+ R Sbjct: 95 GDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGWIRPNDHVDVIGTFRDPQT 154 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLV------GSTATLELTPMQAKALVAAQSVAKL 216 + +L N+ V+A + L+ S +L + P +A+ LV A + L Sbjct: 155 DENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLLVIPEEAEILVLASELGNL 214 Query: 217 SLVLRSIADLN 227 +L LR+ D++ Sbjct: 215 TLSLRNEDDVD 225 >gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium HTCC2083] gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium HTCC2083] Length = 286 Score = 56.6 bits (135), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 35/108 (32%), Positives = 63/108 (58%), Gaps = 7/108 (6%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTV---VLSN 173 GL S L G+ A T+ + +S V G ++P ++VDV V++ E++ + TV + S Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180 Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +R+IAID + + + ++ + T T+ +T +Q +L AQS +L+L L Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSL 228 >gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5] Length = 322 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 8/132 (6%) Query: 102 ILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + KG+PI +L G GL+++LP G RA + ++ V G + P D VDV++ S Sbjct: 113 VSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVDVIVTMSP 172 Query: 161 S---ERKPTVTVVLSNIRVIAIDHNIDSDERVL----VGSTATLELTPMQAKALVAAQSV 213 S + P ++L N+RV+A+ ++ +R + ATL + Q++ L A + Sbjct: 173 SGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEKLALAATK 232 Query: 214 AKLSLVLRSIAD 225 ++ L LRS AD Sbjct: 233 GQILLSLRSGAD 244 >gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] Length = 284 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 6/112 (5%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVT-VVLSNI 174 G+++LL G RA ++ + ++ V G++ +DHVDV L R VT ++ +N+ Sbjct: 123 GVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQANV 182 Query: 175 RVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +++AID + D + T T+E++P Q +L AQ+ KLSL L I+D Sbjct: 183 KLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISD 234 >gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512] Length = 304 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 42/129 (32%), Positives = 70/129 (54%), Gaps = 12/129 (9%) Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G+P+ K+ G LS+ L +G +A ++ ++ V G ++P+D VDV++ R + R Sbjct: 103 GEPVLSSKITGAGERATLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVV--R 160 Query: 164 KPT------VTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAK 215 P V V+L ++V+A+D D DE +V T T E+T +A+ L S+ Sbjct: 161 GPEGNDQTFVDVLLQGVKVLAVDQTADERKDEPSVV-KTVTFEVTTDEAQRLTLGSSIGT 219 Query: 216 LSLVLRSIA 224 LSL LR++A Sbjct: 220 LSLALRNVA 228 >gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] Length = 250 Score = 56.2 bits (134), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 37/142 (26%), Positives = 76/142 (53%), Gaps = 11/142 (7%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G ++ +++G+ I +LV N L+ +P+G RA +++++ + V +I+P D VD+ Sbjct: 83 GKRLKESVIEGEQILRSRLVQEDNFTLAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDI 142 Query: 155 VMVRSLSER---KPTV------TVVLSNIRVIAI--DHNIDSDERVLVGSTATLELTPMQ 203 + L ++ + T+ V+ N++V+A+ D I+ D+++ + T TL ++P Sbjct: 143 IASFPLEKQDIGQNTIINLGISQTVIQNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKD 202 Query: 204 AKALVAAQSVAKLSLVLRSIAD 225 A+ L + + LRSI D Sbjct: 203 AEKLTFVTEFGTMRMTLRSIGD 224 >gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 351 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 65/260 (25%), Positives = 119/260 (45%), Gaps = 30/260 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEEVITENPAKFINVLISKGDLAV 57 M+ ++ IV++GVF ++A ++A ++ QT EV + V+++ L Sbjct: 1 MRANTIIMIVLAGVFGVLAVVLANIWLANQRGAIAQTNEVQRDT------VVVAAVALKF 54 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQ---------PNAMQELDGVLVRVPILKGDPI 108 G +++ + L VA+P V G + Q L + V P+L Sbjct: 55 GDILSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLA---- 110 Query: 109 RLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----R 163 K+ G LS++L +G +A ++ ++ V G + P D VD+++ R++ + Sbjct: 111 --TKITGPGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTD 168 Query: 164 KPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 K V V+L +++V+A+D D S + V + TLE + A+ L A +LSL LR Sbjct: 169 KSFVDVLLQSMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQ 228 Query: 223 IADLNPSSSEDSDVWDVQEE 242 A ++E + D+ E Sbjct: 229 AAASKGETTERITLSDLTGE 248 >gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 323 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 91/194 (46%), Gaps = 8/194 (4%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 I V+++KGDL G V++ + + P E + P+ +DG + + G Sbjct: 52 IPVVVAKGDLNKGTVLSADNVAVRQIPREFAHSASVF----PDQFARIDGQPIAYGLKSG 107 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + + + S+ L G RA T+ + +++ G+++P D +D+++ +K Sbjct: 108 ESVMWGLMEGKKVPTFSARLEAGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDHGGKKI 167 Query: 166 TVTVVLSNIRVIAIDHNIDSDERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 T +L ++V+A D R ST TL TP QA+ ++ A+ K++ +LR+ Sbjct: 168 TFP-LLQAVQVMATGQRAVDDPRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRN 226 Query: 223 IADLNPSSSEDSDV 236 AD P + D+ Sbjct: 227 PADQAPMAGTRGDL 240 >gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis MSMB43] Length = 351 Score = 55.8 bits (133), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 60/212 (28%), Positives = 96/212 (45%), Gaps = 30/212 (14%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL G+++ + L W + P + V G + +P +L G L+R + +G PI + Sbjct: 48 DLPEGLLLRDSDLVWKSVPRDQVPPGAWAE-GEPGG-SDLKGNLLRHMVREGTPIGAGDV 105 Query: 114 VD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-SERKPTVT--- 168 + G L++ L G RA ++ I S G+I+P D+VDV++ + L + P V Sbjct: 106 ISPNAPGFLAAALKLGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDH 165 Query: 169 -----VVLSNIRVIAIDHNIDSDE-------------RVLVGSTATLELTPMQAKALVAA 210 V S +RV+A+ + T TLE+TP A+A+ A Sbjct: 166 AIVSETVASRVRVLAVGSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLA 225 Query: 211 QSVAKLSLVLRSIA--DLNPSS---SEDSDVW 237 + LSL LRS A + NP+S + VW Sbjct: 226 SHLGSLSLALRSFAVSERNPASLAPEAPAPVW 257 >gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] Length = 271 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 44/143 (30%), Positives = 65/143 (45%), Gaps = 4/143 (2%) Query: 101 PILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVR 158 P+ G PI L G+ G+++ +P G RA + AVGG I P HVDV V R Sbjct: 87 PVTVGQPILSTDLAAPGSSLGITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYR 146 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKL 216 + +P VL N V+A H D + + TL L+P A+ V A + + Sbjct: 147 NPGSPQPITATVLQNALVLATGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTI 206 Query: 217 SLVLRSIADLNPSSSEDSDVWDV 239 VLR+ AD +D+ ++ Sbjct: 207 HFVLRNGADQQKGMPPPADLAEL 229 >gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217] gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217] Length = 289 Score = 55.5 bits (132), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 94/193 (48%), Gaps = 15/193 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103 +++ ++ + G +T + +AFP++++ +G + P+ + L R+ Sbjct: 48 VDIYVANQLIKYGEPLTTEAVRLIAFPKDSLPEGAFSSTEELFPSGASVVRKALRRME-- 105 Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160 K +PI K+ G G++S L +G RA + + ++S V G ++P D VD+ S+ Sbjct: 106 KNEPILAVKVTKPGEEAGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTVDIYWTGSIGA 165 Query: 161 ----SERKPT---VTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212 +E T ++ + +++IA+D D D +V T + +TP Q AL AQS Sbjct: 166 GNLRTEEDSTGEVTKLIDTGVKLIAVDQVADMDMTEAVVARTVAVAVTPNQVAALAQAQS 225 Query: 213 VAKLSLVLRSIAD 225 +LSL L +D Sbjct: 226 TGRLSLSLVGASD 238 >gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] Length = 243 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 91/198 (45%), Gaps = 22/198 (11%) Query: 26 LVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 ++ +VQ+E + EN + + I+ ++ G ++P++L+ V P + I D Sbjct: 56 FLTSSNVQSEIATLRENTSSTV---ITTTAISQGTTISPDMLKVVDIPASFLNSEAIADT 112 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVG 143 Q+L G + I + L N L+S L G A ++ + S + Sbjct: 113 ------QDLVGKIALYNIAANSQVTSGMLSAMDNAATLASSLQAGNVAISIAVDSESGLS 166 Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 G+IK ND+VD++ V++ N+RV A+D N+ V +T TLE+ P Q Sbjct: 167 GLIKQNDYVDIL---------GNGEVIVQNVRVAALDSNLSGS--VSQYATVTLEVAPTQ 215 Query: 204 AKALVAAQSVAKLSLVLR 221 A A+ AQS L VLR Sbjct: 216 ATAIQEAQSENPLRFVLR 233 >gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] Length = 300 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 64/246 (26%), Positives = 111/246 (45%), Gaps = 16/246 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++++ + ALVAG++ +R + E K I VL++ LA G Sbjct: 1 MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + ++ + E G + D E+ G + I + DPI +KL+ +G Sbjct: 61 LDTTMVRLKPYDPEAAPLGAMRDA------SEVVGRVTAREISQDDPITPDKLLPKGAAG 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVTVVLSNIRV 176 GGL + + GKRA T+ + GG+I P VDV+ + + + V+L NI V Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174 Query: 177 IAI----DHNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + + + D R + +T TL +TP +A+ L A + + L LR D + + Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234 Query: 231 SEDSDV 236 + +DV Sbjct: 235 TAGADV 240 >gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45] gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45] Length = 286 Score = 55.1 bits (131), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 59/184 (32%), Positives = 94/184 (51%), Gaps = 12/184 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FIDD-VHQPNAMQELDGVLVRVPILK 104 V +++ L G +T + V +PE + +G FI++ + P + D +V I K Sbjct: 49 TVWVAEKPLKYGQPLTREDVRAVNWPENAIPEGSFIEETLLFPENTK--DHRIVLRNIEK 106 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-----VMVR 158 + I K+ + G + GL+S L +G RA T+ + +SS V G ++P D VDV V V Sbjct: 107 DEAIMAVKVTEPGEDSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVG 166 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + S ++ S +++IAID + D+ E + T T+ + P Q AL AQS KL Sbjct: 167 NQSSNGDVTKLIESAVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKL 226 Query: 217 SLVL 220 SL L Sbjct: 227 SLSL 230 >gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 51/159 (32%), Positives = 86/159 (54%), Gaps = 12/159 (7%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAATMDISISSAVGGMIK 147 ++E G + +VP+ +G+ + KL RG+G GL+ LP+G RA T+ AVGG ++ Sbjct: 79 IEEAVGKVTKVPLAEGEFVLTSKLA-RGDGSDGLAYRLPEGTRALTIAADPVLAVGGFVQ 137 Query: 148 PNDHVDVVMVRSLSERKPTV-----TVVLSNIRVIAIDHNIDSD-ERVLVGST-ATLELT 200 P D VDV++ L KP V +++ N+ V+A+ + ++ E G T TL + Sbjct: 138 PGDRVDVLI--GLPGGKPGVEQPEARILVENVLVLAVQQDTAAEGEPAGDGLTHLTLAVA 195 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 P A A+V A+ +L L+LR D P+ + + + D+ Sbjct: 196 PAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTARLADL 234 >gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 238 Score = 54.7 bits (130), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 58/206 (28%), Positives = 97/206 (47%), Gaps = 26/206 (12%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD---GVLVRVPIL 103 NV+++ + +T +L+ V+ P D VH P A++ +D G + R I+ Sbjct: 41 NVVVASSTIPAHTRITAEMLDVVSIPN--------DAVH-PEALRSVDDAAGGISRTEIV 91 Query: 104 KGDPIRLEKLV--DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 +G+ + ++V DR LS +P+G RA ++ + + V G I D++DV++ + Sbjct: 92 RGEQVIDARVVTEDR-RATLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDT 150 Query: 162 E--RKPTVTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 E V N+ V+A N D +E+ +VG T TL +T QA+ L A Sbjct: 151 EIHEGAITYTVFQNVNVLATGPNTREKDDEEQEVVG-TVTLSVTAAQAEVLAYALLKGNY 209 Query: 217 SLVLRSIAD-----LNPSSSEDSDVW 237 L LRS D L SSE+ + + Sbjct: 210 HLTLRSPLDEDEVELESYSSENFETF 235 >gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 354 Score = 54.3 bits (129), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 66/257 (25%), Positives = 117/257 (45%), Gaps = 24/257 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ IV++GVF ++A ++A ++ Q + N + V+++ L G Sbjct: 1 MRANTVIMIVLAGVFGVLAVVLANIWLAN---QRSAIAQTNDIQRDTVVVAAVALKFGDT 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQ-------PNAM--QELDGVLVRVPILKGDPIRLE 111 ++ + L VA+P V G + P A Q L + V P+L Sbjct: 58 LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLA------T 111 Query: 112 KLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPT 166 K+ G LS++L +G +A ++ ++ V G + P D VDV++ R++ + Sbjct: 112 KITGPGQRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSF 171 Query: 167 VTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V V+L +RV+A+D D S + V + TLE + A+ L A +LSL LR A Sbjct: 172 VDVLLQGMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAA 231 Query: 226 LNPSSSEDSDVWDVQEE 242 ++E + D+ E Sbjct: 232 SKGETTERVTLSDLTGE 248 >gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 300 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 77/152 (50%), Gaps = 9/152 (5%) Query: 82 DDVHQPNAMQELDGVLVRVPILKG----DPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 +DV A ++ VL R P++ +P+ +L +G+G GL ++P G RA ++ + Sbjct: 68 EDVFPAGAFSRVEDVLER-PVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMRAISVRV 126 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDERV--LVGS 193 + V G + P VDV++ R T T VL NI V++ I +D R ++ Sbjct: 127 NDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLSAGQTITTDGRSQPIMAP 186 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 TL +TP +A+AL A + + LVLR+ D Sbjct: 187 VVTLLVTPGEAEALTLANTEGHIQLVLRNSTD 218 >gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] Length = 271 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/193 (25%), Positives = 95/193 (49%), Gaps = 16/193 (8%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 + V+++ D+ G V+T ++ + PE+ V + +P++ + V V + Sbjct: 39 LVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVV----RPDSASYIVNQKVLVALQA 94 Query: 105 GDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSE 162 GDP+ + + LSS + K RA T++ +++VGG I+PNDHVDV+ R Sbjct: 95 GDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGWIRPNDHVDVIGTFRDPQT 154 Query: 163 RKPTVTVVLSNIRVIAID--------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + +L N+ V+A + I ++R + +L + P +A+ LV A + Sbjct: 155 DENVAVTLLQNVIVVATGKITGTTNVNLIPENQREY--NNISLMVLPEEAEILVLAVELG 212 Query: 215 KLSLVLRSIADLN 227 +L+L LR+ D++ Sbjct: 213 QLTLSLRNEDDVD 225 >gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1] gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1] Length = 403 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 +++++G R +G+P+ KL+ NG S +P G +M S+V +++P Sbjct: 106 LEDVEGKFARQRFYEGEPVMPVKLMADANGS-SQTIPVGFSVVSMRADPESSVATLVRPG 164 Query: 150 DHVDVVMVRSLSERKP--TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQ 203 D VDV+ SE P T VL+ +RV A+D +DS+ + +L + Sbjct: 165 DRVDVMAYFVKSELIPETTAKTVLTGVRVFAVDGRTEREVDSEAEAKPARSISLLIHKKD 224 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A A + K+ L L + +D+N + ++D Sbjct: 225 TPAWTYASELGKIRLTLGNPSDINETKDGETD 256 >gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47] Length = 403 Score = 54.3 bits (129), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 7/152 (4%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 +++++G R +G+P+ KL+ NG S +P G +M S+V +++P Sbjct: 106 LEDVEGKFARQRFYEGEPVMPVKLMADANGS-SQTIPVGFSVVSMRADPESSVATLVRPG 164 Query: 150 DHVDVVMVRSLSERKP--TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQ 203 D VDV+ SE P T VL+ +RV A+D +DS+ + +L + Sbjct: 165 DRVDVMAYFVKSELIPETTAKTVLTGVRVFAVDGRTEREVDSEAEAKPARSISLLIHKKD 224 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A A + K+ L L + +D+N + ++D Sbjct: 225 TPAWTYASELGKIRLTLGNPSDINETKDGETD 256 >gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] Length = 274 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 L G RA + + ++S V G ++P D VDV S S + T ++ I ++A+D + Sbjct: 125 LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIVAVDQTAN 183 Query: 185 SD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +D ++ T T+E++P Q L AQ+ +LSL L Sbjct: 184 ADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221 >gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] Length = 372 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/201 (24%), Positives = 92/201 (45%), Gaps = 15/201 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +L++ D+ + + ++ +P+ V +G + ++ E++ + KG+ Sbjct: 42 QILVALADIDIDAKLNAENVQLEEWPKSKVPEGAV------RSLDEVEAKFAQQRFFKGE 95 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKP 165 PI L K+ D+ N +P+G R + + + + I P D VDV V +R E K Sbjct: 96 PILLAKISDQ-NVNPMIRIPEGYRVMPVKVDDETVLKA-ISPGDRVDVMVFLRRSEEIKQ 153 Query: 166 TVT-VVLSNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 T T +L N+RV A++ N + D + T +L + P Q++ L A + K+ L + Sbjct: 154 TATYTILRNVRVFAVNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTM 213 Query: 221 RSIADLNPSSSEDSDVWDVQE 241 R D + E DV + E Sbjct: 214 RR-PDETDEAGEGEDVTPITE 233 >gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] Length = 339 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/195 (25%), Positives = 86/195 (44%), Gaps = 34/195 (17%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+A V+T +L+ V P V G + D Q A+ + G+ + GD + KL Sbjct: 76 DIAPQTVLTEEMLKTVEVPANLVPAGALTDKKQ--ALGKKTGI----DLFAGDILTERKL 129 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G GG ++P G RA + ++ + V G KP D VD+++V +L + Sbjct: 130 TSHG-GGFVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKD 188 Query: 174 IRVIAIDHNID----------SDERVLV---------GSTA--------TLELTPMQAKA 206 + ++A++ + D SD++ L GST T+ LTP A Sbjct: 189 VLILAVNKSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAK 248 Query: 207 LVAAQSVAKLSLVLR 221 L+ + + +L ++LR Sbjct: 249 LIGSSRIGQLQMMLR 263 >gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131] gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides KD131] gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] Length = 274 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%) Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 L G RA + + ++S V G ++P D VDV S S + T ++ I ++A+D + Sbjct: 125 LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIVAVDQTAN 183 Query: 185 SD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +D ++ T T+E++P Q L AQ+ +LSL L Sbjct: 184 ADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221 >gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 343 Score = 53.9 bits (128), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 52/214 (24%), Positives = 95/214 (44%), Gaps = 40/214 (18%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 N + + V++ + A G V+ N P + V++ D+ ++ ++ + + Sbjct: 52 NEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPADLVYE----DMILASSFDKVANLRLVR 107 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + +G P+R + + S LL GKRA T+++ + ++ M+KP +HVD+ ++ S Sbjct: 108 QVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTIEVDMVNSTAKMLKPGNHVDLFLISST 167 Query: 161 SER-----KPTVTVVLSNIRVIA------------------------IDHNIDSDERVLV 191 S K T +++S++ V+A +D N D D Sbjct: 168 SPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYGEAMAAQAAEGAEGVDTNPDYD----- 222 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + TL ++P QA L AQ V L VLR+ AD Sbjct: 223 --SLTLMVSPEQAARLALAQKVGSLRAVLRNAAD 254 >gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] Length = 258 Score = 53.5 bits (127), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 107/222 (48%), Gaps = 13/222 (5%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + + V+ + +A ++A++ ++ V T T P K V++ +L VG V++ Sbjct: 8 FLYVAVAVLLGGLASVLAVKYIN-QQVATR-THTAAPQKMRTVVVPVHNLKVGDVLSAKD 65 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L P V D P+ + G ++ P+ +G PI + N S ++ Sbjct: 66 LATRDIPVAYV----PADALTPDDYESHLGQMLTTPLAQGAPISAMAMEPIANH-FSDII 120 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-- 183 + A T+D+S ++++ G+I P DH+D++++ S K + +LS++ V+A + Sbjct: 121 KPDRVAYTIDVSETNSISGLIVPGDHIDILLLLS-KNSKDDIRPLLSDVLVLATGKHAKG 179 Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 D E S TLELTP A+ + A+ + +L ++LRS Sbjct: 180 VRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRS 221 >gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599] gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599] Length = 339 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/267 (22%), Positives = 118/267 (44%), Gaps = 32/267 (11%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTE-EVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ G A+ AG R V+ VQ E E + + ++V+++ L G +V+ + Sbjct: 22 MLCGGVAIYAG---SRYVN-EQVQAERERLAPVAQQMVDVVVANATLDKGEIVSGETMAI 77 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 + P E V + P L G + +P+ G+ + + SS + G Sbjct: 78 RSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVFSSRVKPG 133 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----------VVLSNIRVI 177 RA T+ + +++ GM++P D +D++ L+ R P+ + +L N+ V+ Sbjct: 134 IRALTISVDEINSISGMLQPGDRIDLL----LTARPPSASGHGEAEHDATVPLLQNLLVM 189 Query: 178 AIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 A + + D+R S+ T+E+TP QA+ L+ AQ +L+ VLR+ D P + Sbjct: 190 ATGRQVRPGANDNGDDRSF--SSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMDA 247 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKD 258 D+ + + + V+ +D Sbjct: 248 AAVDLRSLFPQPARPAVAPRKVVARQD 274 >gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] Length = 309 Score = 53.1 bits (126), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 54/185 (29%), Positives = 92/185 (49%), Gaps = 12/185 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ D+ V + P L V +P + G +P A L G + VPI +G+ Sbjct: 59 GVVVAQVDIPVATPIKPEWLGVVPWPVTALPPG---AASEPAA---LVGQVAIVPITRGE 112 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + KL G GL++LLP G RA + + V G + P D VDV++ E P Sbjct: 113 AVLPSKLATAGARSGLATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVP 172 Query: 166 -TVTVVLSNIRVIAIDHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 T +VL N++V+A+ +++ E+ + ATL +T +++ L + S +L L L Sbjct: 173 YTSKIVLQNVKVLAVGQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSL 232 Query: 221 RSIAD 225 R++ D Sbjct: 233 RALGD 237 >gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] Length = 285 Score = 52.0 bits (123), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 94/189 (49%), Gaps = 11/189 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG---FIDDVHQPNAMQELDGVLVRVPI 102 ++V ++ L G ++ + + V +PE + +G +D + P + +L V++R + Sbjct: 48 VDVFVATKPLKYGERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKLR-VVLRA-M 105 Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV----VMV 157 K + + K+ G + G++S L +G RA + + +SS V G ++P D VDV +M Sbjct: 106 EKDEAVMAVKVTAPGEDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMP 165 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + R ++ +N+ ++A+D + D ++ T T+ P Q AL AQ+ +L Sbjct: 166 GAGGSRGEVTRLIETNVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRL 225 Query: 217 SLVLRSIAD 225 SL L D Sbjct: 226 SLALVGAGD 234 >gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b] gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b] Length = 290 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 93/189 (49%), Gaps = 16/189 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDG-FID-DVHQPNAMQELDGVLVRVPIL 103 + VL++K L G + P+ + V FP++ + +G F+ D P QE V R + Sbjct: 48 VEVLVAKTPLKYGQKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAV--RRAME 105 Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156 + I K+ G + G+SS L +G RA + + ++S V G ++P D VDV Sbjct: 106 VNEAIMAVKVTAPGEDAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRG 165 Query: 157 ---VRSLSERKPTVT-VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQ 211 VR+ VT ++ + +++IA+D D + + ++ T T+ P Q AL AQ Sbjct: 166 GSDVRTEGNSMGDVTKLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQ 225 Query: 212 SVAKLSLVL 220 + +LSL L Sbjct: 226 ATGRLSLSL 234 >gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] Length = 321 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/166 (27%), Positives = 80/166 (48%), Gaps = 35/166 (21%) Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L G VR + +G+ I + ++ GN G L+++L GKRA ++ S S+ G++ D Sbjct: 102 LMGATVRRSVPQGELITQDDVLYPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDW 161 Query: 152 VDVVMV--RSLSE------------RKPTVTVVLSNIRVIAIDHNIDS------------ 185 VDV++ R +E K +L+N+RV+A++++ +S Sbjct: 162 VDVILTLKRETAEAMADQQDKTSGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKT 221 Query: 186 DERVLVGSTA--------TLELTPMQAKALVAAQSVAKLSLVLRSI 223 D + + A TLE+TPM+A+AL A+ L + +R + Sbjct: 222 DAKKTASTAARRVDYRTITLEVTPMEAQALAVAKEAGDLQVSIRGL 267 >gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 274 Score = 51.6 bits (122), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 35/120 (29%), Positives = 62/120 (51%), Gaps = 6/120 (5%) Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 K +P+ K+ + G GL L G RA + + ++S V G ++P D VDV + + Sbjct: 105 KFEPVLAVKVTEPGVEAGLR--LASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAGAN 162 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + T ++ I ++A+D ++D ++ T T+E++P Q L AQ+ +LSL L Sbjct: 163 GE-TTRLIEKTIPIVAVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSL 221 >gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] Length = 354 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 60/246 (24%), Positives = 105/246 (42%), Gaps = 36/246 (14%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV-ITENPAKFINVLISKGDLAVGMVVTPN 64 L+GI V+ + LVS ++ E E P ++V++ + D+ G + Sbjct: 18 LIGIAVAAAGGITWVTYRYMLVSEARIKAEAAERREGPG--VSVVVPRADVPAGTPLDSA 75 Query: 65 ILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + V+D + D H NA VLV+ P+ +G P+RL+ + Sbjct: 76 VFVAREISADLVYDDMLQVDDFTHHRNA------VLVK-PVRRGRPLRLQDVDATRARDF 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------ERKPTVTVVLS 172 S L G RA T+ I ++ M++P + VD+ V +LS ++ +++ Sbjct: 129 SDTLAAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMP 188 Query: 173 NIRVIAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +RV+A H++ D R G T TL++ +A + AQ + L LV Sbjct: 189 GVRVLATGHDVRPRDAGEAARDMADGARRDGYG-TVTLQVPVAEAARIALAQKLGGLRLV 247 Query: 220 LRSIAD 225 LR+ D Sbjct: 248 LRNSKD 253 >gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] Length = 279 Score = 51.2 bits (121), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 15/206 (7%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA 89 H Q E E + ++++ DL G+ ++ L +P E G A Sbjct: 32 HKAQQE---AERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GA 82 Query: 90 MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ L G +++ P++KG+P+ KL + GL++ + G RA T+ V G +K Sbjct: 83 VKPLLGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKV 142 Query: 149 NDHVDVV-MVRSLSERKPTVT-VVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQ 203 D VDV+ V+ L + K V + L ++ V+A+ H + D + L G TL P Sbjct: 143 GDRVDVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPAD 202 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPS 229 A+ L A K+ L LR+ D P+ Sbjct: 203 AERLALAAGEGKILLALRNRQDRQPA 228 >gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654] Length = 274 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 49/182 (26%), Positives = 87/182 (47%), Gaps = 10/182 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPILK 104 + + K +A G +T + FP + + +G + P + VL + K Sbjct: 39 EIYVVKESVAYGDRITDENIRLTRFPVDAIPEGAFKTEEELFPQGEKRYRTVLR--AMEK 96 Query: 105 GDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSE 162 + + K+ + G + G+++ L G RA + + ++S V G ++P D VD+ R S+ Sbjct: 97 DEALLAVKVTEAGADAGVAARLASGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSD 156 Query: 163 ---RKPTVTVVLSNIRVIAIDHNIDSDERV-LVGSTATLELTPMQAKALVAAQSVAKLSL 218 + ++ +NIR+IAID D+D V T T+E TP Q AL AQ+ +++L Sbjct: 157 SVTSQEVTKLIQTNIRIIAIDQMADTDRTAPTVARTVTIEATPEQVAALAQAQATGRMAL 216 Query: 219 VL 220 L Sbjct: 217 SL 218 >gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1] gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1] Length = 309 Score = 50.8 bits (120), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/208 (25%), Positives = 92/208 (44%), Gaps = 33/208 (15%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 F VL + DL G + + ++W+A ++ F+ V Q +A+ G VR P+ Sbjct: 47 FTPVLAASKDLVPGDFIDNSAVQWLAVDKQYESHSYFLKGVDQVDAVF---GATVREPVA 103 Query: 104 KGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156 KGD + +V G+ G +S+L G RA + ++ G++ D VDVV+ Sbjct: 104 KGDVLGSRVVVLPGDAGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQ 163 Query: 157 --------VRSLSERKPTVTVVLSNIRVIAIDHNID-------------SDERVLVGSTA 195 + S+ K +L N+RV+A++ ++ + +R T Sbjct: 164 ENGGEADPMASIELPKLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFY-ETV 222 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSI 223 TLE+ P + L A+ + L L LRS+ Sbjct: 223 TLEVFPKDVERLTVAREIGVLQLALRSV 250 >gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis TXDOH] Length = 269 Score = 50.1 bits (118), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/253 (24%), Positives = 104/253 (41%), Gaps = 39/253 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A IA P P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYIAASQPRP----------AAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDD--------------VHQPNAMQELDGVLVRVPILKGD 106 + L W +V G + + A +L G L+R P+ +G Sbjct: 55 LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114 Query: 107 PI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161 P+ + ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174 Query: 162 -----ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211 ER + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234 Query: 212 SVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 HLGALSLALRSFA 247 >gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] Length = 358 Score = 50.1 bits (118), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 66/276 (23%), Positives = 113/276 (40%), Gaps = 49/276 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+T +V +GV +++ G++ +S + E N + V+ +K D+ VV Sbjct: 17 KITYRQWVVAAGVVSILLGLMVYLAMSGDDQKAAEKPQTN---LVQVVAAKQDIPERTVV 73 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120 ++L+ V P E V +G DV +A+ ++ +GD + K+ VD G Sbjct: 74 KEDMLKVVEVPSELVPEGAFHDVA--DAIDHPTSTAIQ----QGDIMTSRKVYVDIRMAG 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + ++P RA T+ I+ + V G P D+VD++++ E ++L ++ ++ I+ Sbjct: 128 FTGIIPPDCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGIN 187 Query: 181 HNID----------------SDER------VLVGS-----------TATLELTPMQAKAL 207 D SD++ VGS TAT+ L P A L Sbjct: 188 RTADLPNTPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKL 247 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 A L LVLR P D +D G Sbjct: 248 AAESQEGTLYLVLR------PFKPRDMYTFDTDYAG 277 >gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] Length = 288 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 51/222 (22%), Positives = 110/222 (49%), Gaps = 19/222 (8%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++VS + ++AG++ + + + ++ I + ++V+++ ++T ++ Sbjct: 8 LIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSIITAEDVKV 63 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPK 127 V P ++ G + ++ E+ G + + +GDP+ KL +D G++ LP Sbjct: 64 VRMPRSSIPTGEV------LSLDEVVGKASMLALSEGDPVLKGKLSLDPEKLGVAFQLPD 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNID-- 184 G+ A + I A GG+++P D+VDV V R PT ++LS ++V+A+ + Sbjct: 118 GRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLALGGVLTRK 177 Query: 185 -----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + E+ ++ +A +E++P +A AQS+ + L LR Sbjct: 178 EEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALR 219 >gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis E264] Length = 345 Score = 49.7 bits (117), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 59/253 (23%), Positives = 104/253 (41%), Gaps = 39/253 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDD--------------VHQPNAMQELDGVLVRVPILKGD 106 + L W +V G + + A +L G L+R P+ +G Sbjct: 55 LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114 Query: 107 PI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161 P+ + ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174 Query: 162 -----ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211 ER + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234 Query: 212 SVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 HLGALSLALRSFA 247 >gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 49.3 bits (116), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 275 Score = 48.9 bits (115), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 350 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLASLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] Length = 366 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] Length = 350 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei 1710b] gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 1710b] gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 350 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] Length = 350 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] Length = 324 Score = 48.9 bits (115), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 96/226 (42%), Gaps = 14/226 (6%) Query: 10 VVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPN 64 + + +FA++ G+ A V H V+ E+P K I + I+ DL G ++ + Sbjct: 1 MTAAIFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLD 60 Query: 65 ILEWVAFPEE---NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + + E +D + + Q + G ++ I G P L G G G Sbjct: 61 DISLLQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAI 179 +S +L G RA T+ I V G +P VDV+ ++ P T+ +L +RV+A+ Sbjct: 121 ISEILEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAV 180 Query: 180 DHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLR 221 +V G TLE++P Q K L + LSL LR Sbjct: 181 GDQAVPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALR 226 >gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] Length = 350 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRALYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] Length = 112 Score = 48.5 bits (114), Expect = 0.001, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 48/87 (55%), Gaps = 6/87 (6%) Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206 P + VDV+ S S+ VL +I+V+A+D S E + ++ TLE+TP QA+ Sbjct: 3 PGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAEK 62 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSED 233 L++AQS ++ L LR NP E+ Sbjct: 63 LLSAQSKGEIQLTLR-----NPHEPEE 84 >gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] Length = 308 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 63/269 (23%), Positives = 114/269 (42%), Gaps = 52/269 (19%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + ++ +GV AL I+ +L Q P + VL++ DL+ G + + + Sbjct: 11 VALIAAGVMAL---IVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGDFIDGSAV 67 Query: 67 EWVAF--PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLS 122 W P F FI Q + +L G +R I G P+ +V R N G ++ Sbjct: 68 RWQETDQPVSRTFY-FIRGKDQES---QLYGATLRGKIPAGTPLNNNSVV-RPNEPGFIA 122 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPT-----------VT 168 ++L G RA ++ S+ ++ G++ D+VD+++ + +PT Sbjct: 123 AVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPVVGAQ 182 Query: 169 VVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPMQAKA 206 V N+RV+A+++ D+ +R + + TLE TP QA+ Sbjct: 183 TVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPKQAEV 242 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 L A+ V L + RS D +S+D++ Sbjct: 243 LTVAKEVGLLQMAQRSALD----TSDDAE 267 >gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 271 Score = 48.1 bits (113), Expect = 0.001, Method: Compositional matrix adjust. Identities = 38/142 (26%), Positives = 70/142 (49%), Gaps = 7/142 (4%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 AL+ + AM +V + + I + K +V+I+K D+ ++ + + + P Sbjct: 8 LALIIAVFAMFMVYTYIDDEKTKIIKKYGKEQSVVIAKVDIKELELIDDSKVTVTSMPSN 67 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAAT 133 V + ++E+ + VPILKG+ I ++ GLS + GKRA + Sbjct: 68 FVHEKAF------KTIKEIQNTVATVPILKGEQITKPRVSWPDERSGLSRQVAVGKRAIS 121 Query: 134 MDISISSAVGGMIKPNDHVDVV 155 +D+S ++VG +IKP D VD++ Sbjct: 122 LDVSERASVGKLIKPGDRVDIL 143 >gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] Length = 286 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 8/134 (5%) Query: 106 DPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VR 158 +PI K+ G GG+++LL +G RA T+++ +SS V G + P D VDV + Sbjct: 108 EPILATKVTAPGEVGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGID 167 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + ++ + I ++AID +S + T T+++TP Q AL AQ+ LS Sbjct: 168 GANTNGEFTKLIQAGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLS 227 Query: 218 LVLRSIADLNPSSS 231 L L D +SS Sbjct: 228 LSLVGREDDTVASS 241 >gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] Length = 350 Score = 47.8 bits (112), Expect = 0.001, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 103/259 (39%), Gaps = 47/259 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRVLYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEW-----VAFPEENVFDG---------------FIDDVHQPNAMQELDGVLVRV 100 + L W A P + +G +P +L G L+R Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPK--TDLKGDLLRH 112 Query: 101 PILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + Sbjct: 113 PVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQ 172 Query: 160 LS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAK 205 L+ +R + + +RV+A+ D+ + T T E++ A+ Sbjct: 173 LAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQ 232 Query: 206 ALVAAQSVAKLSLVLRSIA 224 + + LSL LRS A Sbjct: 233 VITVGAHLGALSLALRSFA 251 >gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] Length = 312 Score = 47.8 bits (112), Expect = 0.002, Method: Compositional matrix adjust. Identities = 73/260 (28%), Positives = 113/260 (43%), Gaps = 52/260 (20%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-----ENPAKFINVLISKGDLAVGMVVTP 63 V+SG L AGI+A LV H+ + + P K VL++ DL G + Sbjct: 7 YVLSGALVL-AGIVA--LVVRSHLSSAPPPPPPVVVQAPEK-TAVLVAAKDLHPGDFIDS 62 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LS 122 L W EE V F + V ++ L G +R + +G + LV + G L+ Sbjct: 63 ASLRW-QVTEEPVSRTF-NFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPGFLA 120 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS-- 172 ++L KGKRA ++ S ++ G++ D VDV+ M R S +P V +L+ Sbjct: 121 AVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLLASQ 180 Query: 173 ----NIRVIAIDH--------NIDSDE------------------RVLVGSTATLELTPM 202 ++RV+A++ +D+ E R T TLE+TP Sbjct: 181 TIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEVTPQ 240 Query: 203 QAKALVAAQSVAKLSLVLRS 222 QA+AL A+ + L L LRS Sbjct: 241 QAEALAVAKELGILHLALRS 260 >gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] Length = 289 Score = 47.4 bits (111), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 15/188 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103 +++ ++ L G + + + AFP+ ++ +G + P L R+ + Sbjct: 48 VDIFVATRALQYGEALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEM- 106 Query: 104 KGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------ 156 +PI K+ + G G++S L +G RA + + ++S V G ++P D +D+ Sbjct: 107 -NEPILAVKVTEPGAEVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGA 165 Query: 157 --VRSLSERKPTVTVVLSN-IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQS 212 +R+ VT ++ N +++IA+D D D ++ T T+ + P Q AL AQS Sbjct: 166 GNMRTEGNSMGEVTKLIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQS 225 Query: 213 VAKLSLVL 220 +LSL L Sbjct: 226 TGRLSLSL 233 >gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis Bt4] Length = 234 Score = 47.0 bits (110), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/147 (27%), Positives = 70/147 (47%), Gaps = 15/147 (10%) Query: 93 LDGVLVRVPILKGDPI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L G L+R P+ +G P+ + ++ G L++ L G RA ++ I S G+I+P D+ Sbjct: 65 LKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDY 124 Query: 152 VDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATL 197 VDV++ + L+ ER + + +RV+A+ D+ + T T Sbjct: 125 VDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTF 184 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIA 224 E++ A+ + + LSL LRS A Sbjct: 185 EVSSHDAQVITVGAHLGALSLALRSFA 211 >gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 112] Length = 210 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I+P D Sbjct: 32 DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 91 Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196 +VDV++ + L+ +R + + +RV+A+ D+ + T T Sbjct: 92 YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 151 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224 E++ A+ + + LSL LRS A Sbjct: 152 FEVSSRDAQVITVGAHLGALSLALRSFA 179 >gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 339 Score = 46.6 bits (109), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/205 (24%), Positives = 89/205 (43%), Gaps = 19/205 (9%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 HV+ E V + + I V++ + D+ G ++ + E D DD+ + +A Sbjct: 42 HVRAE-VAGKLALRGIEVVVPRRDVPAGTPLSSDAF----VSREIAADLVYDDMVRVDAF 96 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + ++ G P+R S +LP G+RA T +I ++ M++P + Sbjct: 97 DAFRKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVNSTASMLRPGN 156 Query: 151 HVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNI------DSDERVLVGS--TATL 197 VD+ V S ERK V ++L + V+A ++ D DE T T+ Sbjct: 157 RVDMYWVGTQAYASAGERK-AVRLLLPGVLVLATGRSVNARDAGDVDEPASASRYDTVTM 215 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRS 222 ++ A +V AQ + L L+LR+ Sbjct: 216 QVPAADAPRIVLAQKMGTLRLILRN 240 >gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1] gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1] Length = 283 Score = 46.2 bits (108), Expect = 0.004, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 98/217 (45%), Gaps = 25/217 (11%) Query: 26 LVSPHHVQTEEVITENPA-----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ ++++TE V N A + I V+++ DL +G VVT P+ V Sbjct: 26 FLTQNYIKTE-VTQRNKAIDQQREAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPS-- 82 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + V N L+G ++ + G+ I + G+ SLL G+RA T+ + Sbjct: 83 -EAVTPANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141 Query: 141 AVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVIAIDHNID-------SDERVL 190 + G ++P VD+ + ++S P L ++VIA ++ D + L Sbjct: 142 TISGFLRPGSRVDLFLTLKDGAVSRTAP----FLQRVKVIATGTELNDGIPRELKDPKKL 197 Query: 191 --VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 S TL +TP+QA L+ +QSV +++VLR D Sbjct: 198 QKTFSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPED 234 >gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 61/224 (27%), Positives = 100/224 (44%), Gaps = 44/224 (19%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ DL G + + L W E++V F + V+ + L G +R P+ +G Sbjct: 46 KVLVAAKDLHPGDFLDSSSLRWQET-EKSVSRAF-NFVYGQDKQSLLLGATLREPVKEGS 103 Query: 107 PIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS---- 159 + +V+ G +++L KG RA ++ S ++ G++ D VDV+ M R Sbjct: 104 WLSSNVVVNPNEPGFVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSE 163 Query: 160 --LSERKPTVTVVLS------NIRVIAIDHN--------IDSDE---------------- 187 S +P V +L+ ++RV+A++ D+ E Sbjct: 164 LPASRNQPVVMPLLASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAV 223 Query: 188 --RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 R T TLE+TP QA+AL A+ + L L LRS ADL+ S Sbjct: 224 RSRPATYQTVTLEVTPQQAEALAVAKELGILHLALRS-ADLDDS 266 >gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 9] Length = 192 Score = 46.2 bits (108), Expect = 0.005, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I+P D Sbjct: 32 DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 91 Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196 +VDV++ + L+ +R + + +RV+A+ D+ + T T Sbjct: 92 YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 151 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224 E++ A+ + + LSL LRS A Sbjct: 152 FEVSSRDAQVITVGAHLGALSLALRSFA 179 >gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei B7210] Length = 181 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I+P D Sbjct: 22 DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 81 Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196 +VDV++ + L+ +R + + +RV+A+ D+ + T T Sbjct: 82 YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 141 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224 E++ A+ + + LSL LRS A Sbjct: 142 FEVSSRDAQVITVGAHLGALSLALRSFA 169 >gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 91] Length = 166 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 69/148 (46%), Gaps = 15/148 (10%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I+P D Sbjct: 8 DLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGD 67 Query: 151 HVDVVMVRSLS---------ERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTAT 196 +VDV++ + L+ +R + + +RV+A+ D+ + T T Sbjct: 68 YVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVT 127 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRSIA 224 E++ A+ + + LSL LRS A Sbjct: 128 FEVSSRDAQVITVGAHLGALSLALRSFA 155 >gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 299 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 39/135 (28%), Positives = 68/135 (50%), Gaps = 15/135 (11%) Query: 102 ILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I +PI +L +G GGL++++P G RA + ++ V G + P HVD++ + Sbjct: 90 IFAKEPIIESRLAPKGAGGGLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDIL----I 145 Query: 161 SERKP-------TVT-VVLSNIRVIAI--DHNIDSDERVLVGSTATLELTPMQAKALVAA 210 S P T+T +L NI V++ D D++ + ++ L +TP QA+ L A Sbjct: 146 SGNTPGGDGNLGTLTKTLLQNIEVLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLA 205 Query: 211 QSVAKLSLVLRSIAD 225 + + L+LR+ D Sbjct: 206 SNQTTIQLILRNPLD 220 >gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] Length = 497 Score = 45.8 bits (107), Expect = 0.006, Method: Compositional matrix adjust. Identities = 60/228 (26%), Positives = 103/228 (45%), Gaps = 10/228 (4%) Query: 1 MKLTRLMGIVVS-GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 +K++RL + V A++AG +A +VS + I E + V+ + + G Sbjct: 271 VKVSRLQKVTAGLAVIAVLAGGVA--VVS--EIDANNRIAEAFSGTTEVVAATKTIHAGD 326 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ + L +V+ P V DG I ++ + G + I KG + + N Sbjct: 327 EISASDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNP 386 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L++ + G A T+ + S +GGM++ ND V V+ S TV+ ++R+ A Sbjct: 387 ESLAAAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAA 446 Query: 179 IDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +D N ST TLE+TP QA + ++ L+L L S AD Sbjct: 447 LDGNFSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSAD 491 >gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 302 Score = 45.4 bits (106), Expect = 0.007, Method: Compositional matrix adjust. Identities = 62/253 (24%), Positives = 111/253 (43%), Gaps = 42/253 (16%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A V ++E P Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPA- 69 Query: 75 NVFDGFIDDVHQPNAM---QELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130 D QP+A+ E+ G + VPI KG I L+ G + G+S + KR Sbjct: 70 --------DFIQPDAITVPDEIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKR 121 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174 A T+ + V +I+P D +D+ + +++R+ T+ V++NI Sbjct: 122 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 181 Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221 R+ +D + ++ L G +T T+E TP +A+ L S A +L + R Sbjct: 182 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 241 Query: 222 SIADLNPSSSEDS 234 +I PSS+ DS Sbjct: 242 TIPPRMPSSTSDS 254 >gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 390 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 67/157 (42%), Gaps = 22/157 (14%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 ++ +E D RV + +G + ++L ++G G S +P G R T+ ++ + G++ Sbjct: 75 SSKEEYDKRAPRVKLYEGQYVLKKQLGNKGEYGASMEIPPGMRVVTVPVTATMTHSGLLS 134 Query: 148 PNDHVDVVMVRSLSERKPTVT----VVLSNIRVIAIDHNIDSDERVLVGSTATLE----- 198 P D VDV + S + K T VL I V A D V +G+ A E Sbjct: 135 PGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEVWATDS-------VRMGTEAAKEDSSQS 187 Query: 199 ------LTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + P Q L AQ L L+LR D P+ Sbjct: 188 KNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPA 224 >gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] Length = 285 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 106/231 (45%), Gaps = 17/231 (7%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTP 63 RL +V++ V A + + +S +V V+ + P + ++ ++ D++ G + Sbjct: 6 RLTFLVIAVVIAFSVSFVVYKKMSTPNV----VMEQKPGQATTDIAVAVKDMSRGSKIGS 61 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGL 121 ++ + +E + G D+ Q + G +V P+ +PI L D GGL Sbjct: 62 EDVQMATYLQETLPSGHFTDLEQ------VVGRIVLSPLTTTEPILNSDLAPQDLTKGGL 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVT-VVLSNIRVIAI 179 ++++ KRA + + V G + P VDV V + + + +T VL NI V+++ Sbjct: 116 AAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVLSV 175 Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +D++V + TLE+ + + L A + ++ L LR +D+ P Sbjct: 176 GTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEP 226 >gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] Length = 306 Score = 45.4 bits (106), Expect = 0.008, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 57/107 (53%), Gaps = 6/107 (5%) Query: 117 GNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 G GG LS+ L G +A T+ + + + + G ++P D V +V S + + V Sbjct: 186 GMGGDRLSAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERA 245 Query: 175 RVIAIDHNIDSDERVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVL 220 RV+A+ + S V GS + T+E++P +A A+ AQ ++SLVL Sbjct: 246 RVVAVGDDATS---VQSGSASVTVEVSPEEADAVREAQFAGRVSLVL 289 >gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 45.1 bits (105), Expect = 0.009, Method: Compositional matrix adjust. Identities = 71/264 (26%), Positives = 113/264 (42%), Gaps = 51/264 (19%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN----VLISKGDLAVGMVVTPN 64 V+SG L AGI+A+ + S H+ +E VL++ DL G + P+ Sbjct: 7 YVLSGALVL-AGIVALMVRS--HLSSEPPAPPPVVVKAPEKAAVLVAAKDLHPGDFIDPS 63 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SS 123 L W +E V F + V + L G +R + +G + +V G ++ Sbjct: 64 SLRWQTT-DEPVSRSF-NFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPGFVAA 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS--- 172 +L KG RA ++ S ++ G++ D VDV+ M R S +P V +L+ Sbjct: 122 VLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLLASQT 181 Query: 173 ---NIRVIAIDHN--------IDSDE------------------RVLVGSTATLELTPMQ 203 ++RV+A++ D+ E R T TLE+TP Q Sbjct: 182 IVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEVTPQQ 241 Query: 204 AKALVAAQSVAKLSLVLRSIADLN 227 A+AL A+ + L L LRS ADL+ Sbjct: 242 AEALAVAKELGILHLALRS-ADLD 264 >gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 44.7 bits (104), Expect = 0.012, Method: Compositional matrix adjust. Identities = 67/259 (25%), Positives = 112/259 (43%), Gaps = 50/259 (19%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPN 64 V+SG F L AGI+A LV H+ +E + I VL++ DL G + + Sbjct: 7 YVLSGAFVL-AGIVA--LVVRSHLSSEPPAPPPVVAKAPEKIAVLVAAKDLHPGDFIDSS 63 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SS 123 + W +E+V F + V ++ L G +R + +G + +V G ++ Sbjct: 64 SVRWQT-TDESVSRSF-NFVRGRDSQFLLFGATLRETVKEGTQLSSNVVVKPNEPGFVAA 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVV--MVRS------LSERKPTVTVVLS--- 172 +L KG RA ++ S ++ G++ D VDV+ M R +S +P V +L+ Sbjct: 122 VLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLLASQT 181 Query: 173 ---NIRVIAIDHNIDS--------------------------DERVLVGSTATLELTPMQ 203 ++RV+A++ + + R T TLE+TP Q Sbjct: 182 IVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEVTPQQ 241 Query: 204 AKALVAAQSVAKLSLVLRS 222 A+AL A+ + L L LRS Sbjct: 242 AEALTVAKELGILHLSLRS 260 >gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043] gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 44.7 bits (104), Expect = 0.013, Method: Compositional matrix adjust. Identities = 69/262 (26%), Positives = 111/262 (42%), Gaps = 56/262 (21%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEE-----VITENPAKFINVLISKGDLAVGMVVTP 63 V+SG L AGI+A+ + S H+ +E ++ + P K + VL++ L G + Sbjct: 7 YVLSGALVL-AGIVALMVRS--HLSSEPPAPPPMVVKVPEK-VAVLVAAKALHPGDFIDS 62 Query: 64 NILEW--VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 L W P F+ FI ++ L G +R + +G P+ LV G Sbjct: 63 ASLRWDETDKPVSRTFN-FI---RGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPGF 118 Query: 122 -SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--------SERKPTVTVVLS 172 +++L KG RA ++ S ++ G++ D VDV++ S +P V +L+ Sbjct: 119 VAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLLA 178 Query: 173 ------NIRVIAI---------------------DHNIDSDE-----RVLVGSTATLELT 200 ++RV+A+ D S E R T TLE+T Sbjct: 179 SQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEVT 238 Query: 201 PMQAKALVAAQSVAKLSLVLRS 222 P QA+AL A+ + L L LRS Sbjct: 239 PQQAEALAVAKELGMLHLALRS 260 >gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] Length = 264 Score = 44.7 bits (104), Expect = 0.014, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM------VRSLSERKPTVTVVLSN 173 G + ++ G RA + + S+V +I+PND VDV+ VR S +L + Sbjct: 113 GFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQD 172 Query: 174 IRVIAIDHNIDSDERVLVGS----TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 ++V+A+ + S G+ T TL L P + + ++ A KL+L LR+ D+ S Sbjct: 173 VKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFEDVKIS 232 Query: 230 SSEDSDVWDVQEEGKEI 246 + + ++ KEI Sbjct: 233 RETEKRSVNFKQLEKEI 249 >gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] Length = 306 Score = 44.3 bits (103), Expect = 0.019, Method: Compositional matrix adjust. Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 6/107 (5%) Query: 117 GNGG--LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 G GG LS+ L G +A T+ + + + + G ++P D V +V S + + V Sbjct: 186 GMGGDRLSAELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERA 245 Query: 175 RVIAIDHNIDSDERVLVGSTA-TLELTPMQAKALVAAQSVAKLSLVL 220 RV+A+ D V GS + T+E++P +A A+ AQ ++SLVL Sbjct: 246 RVVAVG---DDATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVL 289 >gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] Length = 284 Score = 43.9 bits (102), Expect = 0.020, Method: Compositional matrix adjust. Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 18/217 (8%) Query: 12 SGVFA--LVAGIIAMRLVSPH---HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 +GV+A L+AG+++ V H VQ E P ++ L++ DL G + L Sbjct: 15 TGVYAIALIAGLVSAWAVREHVQQRVQALEAEARTP--MVSRLVAAYDLPAGTQLEELHL 72 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLL 125 PE ID P + L G + + G+P+ L L+S L Sbjct: 73 AVREIPEPWASRASID----PLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPALASRL 128 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNID 184 G+RA T+ + + +++ D +D+ + S + R+ +TV +L +RV+ + D Sbjct: 129 RSGQRALTVAATDLGGLAEVLRVGDAIDIYV--SFAHRQQELTVPLLQGMRVLMVGGEAD 186 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + G TL TP +A VAA+ L+ +LR Sbjct: 187 GENK---GGNITLAATPDEAMRFVAARQSGVLTAMLR 220 >gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 314 Score = 43.9 bits (102), Expect = 0.021, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 42/253 (16%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P Sbjct: 24 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPA- 82 Query: 75 NVFDGFIDDVHQPNAM---QELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130 D QP+A+ E+ G + VPI KG + L+ G + G+S + KR Sbjct: 83 --------DFIQPDAITIPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKR 134 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174 A T+ + V +I+P D +D+ + +++R+ T+ V++NI Sbjct: 135 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 194 Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221 R+ +D + ++ L G +T T+E TP +A+ L S A +L + R Sbjct: 195 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 254 Query: 222 SIADLNPSSSEDS 234 +I PSS+ DS Sbjct: 255 TIPPRMPSSTSDS 267 >gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2] Length = 306 Score = 43.5 bits (101), Expect = 0.027, Method: Compositional matrix adjust. Identities = 34/143 (23%), Positives = 72/143 (50%), Gaps = 6/143 (4%) Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146 P + ++G + + G+ + + R S+ + G+RA T+ + +++ G++ Sbjct: 91 PEHFERIEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLL 150 Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPM 202 +P D +D+++ +K T +L N++V+A D ER ST TL+ T Sbjct: 151 EPGDAIDLMVTLDRGGKKITFP-LLQNVQVMATGQRSADDPKSGERRQY-STVTLDTTQA 208 Query: 203 QAKALVAAQSVAKLSLVLRSIAD 225 QA++++ A+ K++ +LR+ D Sbjct: 209 QAQSVIVAREAGKITALLRNPQD 231 >gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 334 Score = 43.5 bits (101), Expect = 0.028, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 14/135 (10%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISSAVG---GMIKPND 150 G + R I +PIR +L G L L + G RA + IS++ VG GMIKP + Sbjct: 85 GRVARTKIRAAEPIRAGQLYQPGE--LPDLRVADGMRA--VSISVAEMVGIVDGMIKPGN 140 Query: 151 HVDVVMV---RSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVG-STATLELTPMQAK 205 +VDV+ +S ++ + VT+ + ++VIAI+ + + RV G + TLELT QA Sbjct: 141 YVDVLFTVESQSNADLQGGVTMRLFEGVKVIAINRSF-TQSRVERGVNRVTLELTQAQAN 199 Query: 206 ALVAAQSVAKLSLVL 220 + A++ L+L+ Sbjct: 200 IITLAEAKGALTLIF 214 >gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] Length = 301 Score = 43.5 bits (101), Expect = 0.029, Method: Compositional matrix adjust. Identities = 60/253 (23%), Positives = 111/253 (43%), Gaps = 42/253 (16%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPA- 69 Query: 75 NVFDGFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130 D QP+A+ E+ G + VPI KG + L+ G + G+S + KR Sbjct: 70 --------DFIQPDAITIPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKR 121 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTV------------VLSNI 174 A T+ + V +I+P D +D+ + +++R+ T+ V++NI Sbjct: 122 AVTIPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNI 181 Query: 175 -RVIAIDHNIDSDERV-LVG----STATLELTPMQAKALVAAQSVAKLSLVL-------R 221 R+ +D + ++ L G +T T+E TP +A+ L S A +L + R Sbjct: 182 PRMFELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDR 241 Query: 222 SIADLNPSSSEDS 234 +I PSS+ DS Sbjct: 242 TIPPRMPSSTSDS 254 >gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] Length = 299 Score = 43.5 bits (101), Expect = 0.030, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 65/151 (43%), Gaps = 17/151 (11%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 PA +++++ D+ G V+ P L +N +A +L G +V Sbjct: 40 PAVLYPLVVARQDIPAGHVLLPEDLALEESESQNPL--------AYSATTDLVGRMVESS 91 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 I K PI RG + LL G+R + + VGG I+P DHVDV++ + S Sbjct: 92 IEKNAPILSSHFAQRGPA--AQLLKHGERGVAIKVDEVVGVGGFIQPGDHVDVLVYINSS 149 Query: 162 ERKPT---VTVVLSNIRVI----AIDHNIDS 185 T +L ++RVI A+ N+ S Sbjct: 150 NGMTTDSSAQSILRDVRVISYGDALQQNVSS 180 >gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2] gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 298 Score = 43.5 bits (101), Expect = 0.033, Method: Compositional matrix adjust. Identities = 26/69 (37%), Positives = 42/69 (60%), Gaps = 2/69 (2%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVVLSNIRVIAI 179 L+ +P RA +DI +SAVGG+++P D VDV V R + +PT ++L I V+A+ Sbjct: 120 LAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLKAIEVLAV 179 Query: 180 DHNI-DSDE 187 + D+D+ Sbjct: 180 KGQLQDADK 188 >gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] Length = 298 Score = 42.7 bits (99), Expect = 0.047, Method: Compositional matrix adjust. Identities = 27/103 (26%), Positives = 54/103 (52%), Gaps = 8/103 (7%) Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 +D +H P ++ G ++ P+ G P+ L S +L +G+RA T++I + Sbjct: 82 LDAIH-PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDILKEGQRAVTINIDELN 140 Query: 141 AVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIA 178 + GM+ P+DH+D+++ S E + + ++L N+ V+A Sbjct: 141 STAGMLVPSDHIDLLL--SFDEESGDIERKKLQLLLENVTVLA 181 >gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53] gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53] Length = 277 Score = 42.7 bits (99), Expect = 0.048, Method: Compositional matrix adjust. Identities = 40/188 (21%), Positives = 91/188 (48%), Gaps = 15/188 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ--PNAMQELDGVLVRVPIL 103 ++V ++ + G +T + + V +P + + +G P Q +V +P++ Sbjct: 48 VDVYVTTRSVTYGEYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPR--VVVLPMI 105 Query: 104 KGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 + + K+ + G + GL++L+ G RA ++ +++ G +++P+D +DV L + Sbjct: 106 ANELVLTTKVSEPGASRGLTALVEPGFRAFPVEGRVAAGFG-ILRPDDRIDVYWTGRLRD 164 Query: 163 RKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + ++ S +++IA+ N + V+V ++TP + L AQ+ +L+L Sbjct: 165 GREVTNLIKSGLQIIAVLGDAGNRGGPQSVVV------QVTPEEVALLTQAQNSGQLTLA 218 Query: 220 LRSIADLN 227 L DL+ Sbjct: 219 LVGTGDLS 226 >gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] Length = 363 Score = 42.7 bits (99), Expect = 0.052, Method: Compositional matrix adjust. Identities = 56/222 (25%), Positives = 102/222 (45%), Gaps = 35/222 (15%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + V++ D+ VG ++ ++VA E D DD+ + + ++ + P+ +G Sbjct: 56 VTVVVPAQDVPVGTPLSSG--DFVA--REIAGDLVYDDMIRADNFEQYRSSHLVKPVRRG 111 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160 P+R + S +L G RA T++I +A +++P +HVDV V + Sbjct: 112 LPLRAGDIDALRGRDFSDVLRPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDH 171 Query: 161 -SERKPTVTVVLSNIRVIAIDHNI---DSDERV-----------------LVGSTATLEL 199 S+ K +V+ N+ V+A ++ D+ E + +T TLE+ Sbjct: 172 TSDEKKVAQLVMPNVLVLATGEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEI 231 Query: 200 TPMQAKALVA-AQSVAKLSLVLRSIADL---NPSSSEDSDVW 237 P+ A VA AQ + L L+LR+ D PS +++SDV+ Sbjct: 232 -PVDDVARVALAQKIGGLRLILRNSEDKGADGPSLAQESDVF 272 >gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 312 Score = 42.7 bits (99), Expect = 0.053, Method: Compositional matrix adjust. Identities = 41/143 (28%), Positives = 66/143 (46%), Gaps = 8/143 (5%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFPEE 74 A++ G+I L+ + TE V E A L + G +TP++L E V PE Sbjct: 8 AVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAEPVMLPES 64 Query: 75 NVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 F V +A QE L I G + + D G L++++ GKRA Sbjct: 65 --FGALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTMIAPGKRAL 122 Query: 133 TMDISISSAVGGMIKPNDHVDVV 155 T+ ++ +SAVG ++P +VD++ Sbjct: 123 TLPVNAASAVGHFVEPGSYVDIL 145 >gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2] gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira crunogena XCL-2] Length = 296 Score = 42.7 bits (99), Expect = 0.055, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 31/233 (13%) Query: 17 LVAGIIAMRLVSPHHVQTEEVIT--ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 LV G + R+ + + IT E P + +++++ D+ G + + ++ + P E Sbjct: 24 LVYGYVQNRVAEAEANASTKTITVVEKP-ELHSIVVASRDIYRGEKIEADDVKVLNVPME 82 Query: 75 N-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS---LLPKGKR 130 V G I ++ NA+ G + I G+ I +KL S LL K +R Sbjct: 83 GLVVKGVI--INPQNAV----GHVAHQKIYAGEWILAKKLKLESQSRFQSVEALLEKTRR 136 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAID-------HN 182 A + I + + G+I P DHVDV+ V ++ K V+ +L NI V++I Sbjct: 137 AIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVSRTILQNITVLSIGIENQMRAST 196 Query: 183 IDSDE---RVLVGSTAT-------LELTPMQAKALVAAQSVAKLSLVLRSIAD 225 DS+E + A+ L++ QA+ L A +V + L+LR+ AD Sbjct: 197 ADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALAMNVGAIHLLLRNSAD 249 >gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] Length = 367 Score = 42.4 bits (98), Expect = 0.070, Method: Compositional matrix adjust. Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 6/97 (6%) Query: 128 GKRAATMDISIS-SAVGGMIKPNDHVDVVMVRS-LSERK---PTVTVVLSN-IRVIAIDH 181 G RA ++ + S V G+IKP ++VDV M + ++ K +T+ L N +RVIAI+ Sbjct: 117 GMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLFNGVRVIAINR 176 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + G+ TLELTP QA ++ A+ ++++ Sbjct: 177 SYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITM 213 >gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4] gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4] Length = 298 Score = 42.0 bits (97), Expect = 0.077, Method: Compositional matrix adjust. Identities = 23/76 (30%), Positives = 43/76 (56%), Gaps = 1/76 (1%) Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 +D +H P+ E+ G ++ P+ G P+ L S +L +G+RA T+DI + Sbjct: 82 LDAIH-PSRFGEVAGQMLLQPMAPGRPLIETYLPGMRVAQFSDILKEGQRAVTIDIDEIN 140 Query: 141 AVGGMIKPNDHVDVVM 156 + GM+ P+DH+D+++ Sbjct: 141 SSAGMLVPSDHIDLLL 156 >gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 365 Score = 42.0 bits (97), Expect = 0.081, Method: Compositional matrix adjust. Identities = 40/189 (21%), Positives = 83/189 (43%), Gaps = 29/189 (15%) Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 D DD+ +P+ ++ + P+ +G P+R + S +LP G+RA T++I Sbjct: 84 DLVYDDMIRPDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDILPAGQRAVTVEID 143 Query: 138 ISSAVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLSNIRVIAIDHNID------- 184 ++ +++P + VDV + S+ + +++ N+ V+A ++ Sbjct: 144 TVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLATGQDLRPRDAGEA 203 Query: 185 -------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI---ADLNP 228 S ++ + +T TL++ A + AQ + L L+LR+ A P Sbjct: 204 SEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRLILRNADDKASAGP 263 Query: 229 SSSEDSDVW 237 +E+ DV+ Sbjct: 264 VLTEEQDVF 272 >gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 295 Score = 41.6 bits (96), Expect = 0.12, Method: Compositional matrix adjust. Identities = 49/187 (26%), Positives = 84/187 (44%), Gaps = 18/187 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + +++ + G ++ +++E +PE V G + V G++V G+ Sbjct: 47 QIAVARATIEPGKLIDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGE 101 Query: 107 PIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV---VMVRSL-- 160 P+ EK+ G+ L++ + G RA ++ ++ + V G + P D VDV V + Sbjct: 102 PLLAEKIDTTGSVLTLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARG 161 Query: 161 ----SERKPTVTV--VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSV 213 S R V VL ++V+A+D + E +T TLE+TP A L AA Sbjct: 162 APEDSRRSADVFAQPVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRR 221 Query: 214 AKLSLVL 220 A L L L Sbjct: 222 AALGLAL 228 >gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I] gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I] gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS] Length = 281 Score = 41.6 bits (96), Expect = 0.13, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 15/212 (7%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVTPNILEWVAF 71 FALVAG +A + H+Q E A+ + L++ DL G + ++ Sbjct: 17 AFALVAGSLAA-WAAREHIQRRVHDIEQQARVPMVASLVAALDLEAGTPLHDELVAVRDM 75 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKR 130 P+ + G + P+ LDG ++R P+ G+ ++ L L+ L G+ Sbjct: 76 PQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQG 131 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERV 189 A T+ + + +P D VD+ + S + R+ +T+ +L+ +V+A+D D+ Sbjct: 132 AITLPLQELPGLSAAARPGDLVDLYV--SFTHRQRQLTMPLLAGSKVLALD-PADAQGGA 188 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ST TL + + LVAA+ L+ VLR Sbjct: 189 ---STITLRASAREVARLVAARQEGTLTAVLR 217 >gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50] gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 277 Score = 41.2 bits (95), Expect = 0.15, Method: Compositional matrix adjust. Identities = 53/211 (25%), Positives = 95/211 (45%), Gaps = 15/211 (7%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVGMVVTPNILEWVAF 71 FALVAG +A + H+Q E A+ + L++ DL G + ++ Sbjct: 17 AFALVAGSLAA-WAAREHIQRRVHDIEQQARVPMVASLVAARDLEAGTPLHDELVAVRDM 75 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKR 130 P+ + G + P+ LDG ++R P+ G+ ++ L L+ L G+ Sbjct: 76 PQAWLPAGALP----PDEAARLDGAVLRAPVKAGEALQAALLSYPEQTPALTEQLEAGQG 131 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERV 189 A T+ + + +P D VD+ + S + R+ +T+ +L+ +V+A+D D+ Sbjct: 132 AITLPLQELPGLSAAARPGDLVDLYV--SFTHRQRQLTMPLLAGSKVLALD-PADAQGGA 188 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ST TL + + LVAA+ L+ VL Sbjct: 189 ---STITLRASAREVARLVAARQEGTLTAVL 216 >gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804] gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii] Length = 281 Score = 40.8 bits (94), Expect = 0.18, Method: Compositional matrix adjust. Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%) Query: 31 HVQTE--EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 H+Q E+ E ++ L+ DL G + L P V G D P Sbjct: 35 HIQARVREIEREAEVLAVDKLVVATDLPAGTRLQAGHLAVRDIPVPWVASGSFD----PE 90 Query: 89 AMQELDGVLVRVPILKGDPI-RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 A ++ G ++ + +GD + + LS L+P G+RA T+ +A G+++ Sbjct: 91 AADQVIGAVLAADLRQGDALLDVHLAPAVAAPALSELVPAGRRAVTLPAEEINAAAGLLR 150 Query: 148 PNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 D +D+ + S + R +T ++ +RV+A++ D+ + TL+ + A Sbjct: 151 AGDLIDLYV--SFAHRGQHLTAPLMQGVRVLAMESGADAAPSI------TLDASAQDAIK 202 Query: 207 LVAAQSVAKLSLVLRSIAD 225 LVAA+ L+ +LR D Sbjct: 203 LVAARHGGTLTAMLRHRGD 221 >gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae 3841] gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 312 Score = 40.8 bits (94), Expect = 0.19, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFP 72 + A++ G+I L+ + TE V E A L + G +TP++L E V P Sbjct: 6 IAAVIVGLITGVLL---YFWTESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAEPVMLP 62 Query: 73 EENVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 E F V +A QE L I G + + D G L++++ GKR Sbjct: 63 ES--FGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKR 120 Query: 131 AATMDISISSAVGGMIKPNDHVDVV 155 A T+ ++ ++AVG ++P +VD++ Sbjct: 121 ALTLPVNAAAAVGHFVEPGSYVDIL 145 >gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114] gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114] Length = 270 Score = 40.4 bits (93), Expect = 0.23, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 38/235 (16%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-------INVLISKGDLAVGMVV 61 I+V V A+ G+ M S TE ITE +F + V I+K DL G V Sbjct: 6 ILVLAVIAISIGLYGMSQTST----TESPITEKVQEFDKRPEATVMVWIAKKDLMFGSPV 61 Query: 62 TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 LE ++ + + F G I DV + N ++L LV+ IL+GD + + L+ G Sbjct: 62 QRTDLEVQRISQTQADRF-GIIHDV-KFNFNKKL---LVKKDILQGDIVTSDMLLSPGQE 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---- 174 G L+ ++ +GK +++S + +GG I D VD+ + S SE+ + +SN+ Sbjct: 117 GYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISS-SEQNLSNDASISNVQSLK 175 Query: 175 ------RVIAIDHNIDSDERVLVGSTAT-------LELTPMQAKALVAAQSVAKL 216 +++ +D I ++ V + S +T LE++ + LV AQ +A+L Sbjct: 176 MAPLLTQIMVLDI-IQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAEL 229 >gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR] gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR] Length = 257 Score = 40.4 bits (93), Expect = 0.24, Method: Compositional matrix adjust. Identities = 42/153 (27%), Positives = 75/153 (49%), Gaps = 26/153 (16%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM---QELDGVLVRVPILK 104 V+++ ++ V+T +++ PEE V PNA+ +++ G + I Sbjct: 40 VVVANVNIPARTVITGDMVSVKDVPEEFV---------HPNAVLDEEQVIGFVSGSDISA 90 Query: 105 GDPIRLEKLVDR-GNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-- 160 G+ + EK++ + GN LS +P G RA ++ I+ + VGG+++P D VDV+ L Sbjct: 91 GEQVLREKILRKEGNPVSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELET 150 Query: 161 ------SERKPTVT----VVLSNIRVIAIDHNI 183 + PT T V+L N+ V+A+ N Sbjct: 151 SNPASNQQTGPTQTTVAHVLLQNVEVLAVGDNF 183 >gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42] gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 309 Score = 40.0 bits (92), Expect = 0.31, Method: Compositional matrix adjust. Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 10/144 (6%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFPEE 74 A++ G+I L+ + TE V E A L + G +TP++L E V PE Sbjct: 8 AVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDKKVTRGQAITPDMLAEPVMLPES 64 Query: 75 NVFDGFIDDVHQP--NAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131 G + + P +A QE L I G + + D G L++++ GKRA Sbjct: 65 F---GPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAPGKRA 121 Query: 132 ATMDISISSAVGGMIKPNDHVDVV 155 T+ ++ + AVG ++P +VD++ Sbjct: 122 LTLPVNAAEAVGHFVEPGSYVDIL 145 >gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 301 Score = 40.0 bits (92), Expect = 0.34, Method: Compositional matrix adjust. Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 19/121 (15%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ +P G RA ++D + AV G+++P D VDV +V ++ + +L Sbjct: 117 LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSRAQALLQ 176 Query: 173 NIRVIAIDHNIDSDERV-----------LVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 ++V+A+ + + L T TL LTP Q AL A+++ L+L LR Sbjct: 177 MVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGALTLSLR 236 Query: 222 S 222 + Sbjct: 237 N 237 >gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] Length = 376 Score = 40.0 bits (92), Expect = 0.35, Method: Compositional matrix adjust. Identities = 35/140 (25%), Positives = 69/140 (49%), Gaps = 13/140 (9%) Query: 24 MRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 +R +P+ + T T P + +++IS ++ G+ + + +P++++ +G Sbjct: 30 VRFFAPNQLPTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVEG 89 Query: 80 -FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGNGGLSSLLPKGKRAATMDI 136 FI D+ QE+ G + I PI + LVD N + +P G+ A T+ + Sbjct: 90 AFITDI------QEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPV 143 Query: 137 SISSAVGGMIKPNDHVDVVM 156 S S+V ++P DHV+V++ Sbjct: 144 SKLSSVAYGLEPGDHVNVIV 163 >gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 318 Score = 39.7 bits (91), Expect = 0.43, Method: Compositional matrix adjust. Identities = 40/145 (27%), Positives = 67/145 (46%), Gaps = 8/145 (5%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-EWVAFP 72 + A++ G+I L+ + TE V E A L + G +TP++L E V P Sbjct: 6 IAAVIVGLITGVLL---YFWTESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAEPVMLP 62 Query: 73 EENVFDGFID-DVHQPNAMQE-LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 E F V +A QE L I G + + D G L++++ GKR Sbjct: 63 ES--FGALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKR 120 Query: 131 AATMDISISSAVGGMIKPNDHVDVV 155 A T+ ++ ++AVG ++P +VD++ Sbjct: 121 ALTLPVNAAAAVGHFVEPGSYVDIL 145 >gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9] gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9] Length = 284 Score = 39.3 bits (90), Expect = 0.51, Method: Compositional matrix adjust. Identities = 44/176 (25%), Positives = 70/176 (39%), Gaps = 20/176 (11%) Query: 9 IVVSGVFALVAGIIAM--RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 I V A++ G+ M L+S + V E K+I V + LA G ++P+ L Sbjct: 6 IFVIAFLAVLTGLYGMADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQTLSPSSL 65 Query: 67 EWVAFPEENVFD-GFIDDV---HQPNAMQELD---GVLVRVPILKGDPIRLEKLVDRGNG 119 EE G DV +P + +D G LV P L+ P G Sbjct: 66 TREQLTEEAALSLGINSDVTLNFEPTTLMNMDVKQGALV-FPELQTSP---------GQA 115 Query: 120 GLSSLLPKGKRA-ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 G +L+ +G + I+ + + I+P D++D++ V S T L N Sbjct: 116 GYLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENF 171 >gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 279 Score = 39.3 bits (90), Expect = 0.59, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 18/122 (14%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTV 169 LS+L+ G RA ++++ +A G+++P + VDV++ S SE V Sbjct: 119 LSALVKPGMRAISIELDPMAAGLGLLRPGNKVDVLLT-SQSEIDQDANGTPIYNNMAVET 177 Query: 170 VLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL NI ++AI + + + ++ T E++ A+ LV A + +LSLVLR Sbjct: 178 VLQNIHLLAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGN 237 Query: 224 AD 225 D Sbjct: 238 ND 239 >gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] Length = 279 Score = 39.3 bits (90), Expect = 0.63, Method: Compositional matrix adjust. Identities = 35/122 (28%), Positives = 60/122 (49%), Gaps = 18/122 (14%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTV 169 LS+L+ G RA ++++ +A G+++P + VDV++ S SE V Sbjct: 119 LSALVKPGMRAISIELDPMAAGLGLLRPGNKVDVLLT-SQSEIDQDANGTPIYNNMAVET 177 Query: 170 VLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL NI ++AI + + + ++ T E++ A+ LV A + +LSLVLR Sbjct: 178 VLQNIHLLAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGN 237 Query: 224 AD 225 D Sbjct: 238 ND 239 >gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 36/118 (30%), Positives = 54/118 (45%), Gaps = 12/118 (10%) Query: 125 LPKGKRAATMDISIS-SAVGGMIKPNDHVDVVMVRS--LSE---RKPTVTVVLSNIRVIA 178 L G +A T+ + S S V G+I+P D+VDV + S LS+ R V IRV+A Sbjct: 115 LEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVFKGIRVLA 174 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ++ +T T ELTP Q+ ++ AQ +++ NP D V Sbjct: 175 MNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTITV------SYNPDGPGDGGV 226 >gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 319 Score = 38.9 bits (89), Expect = 0.69, Method: Compositional matrix adjust. Identities = 36/119 (30%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKP--TVTVVLSNIRV 176 GL+ +P G RA + + VG ++P D VDV V++R S+ P ++LS +RV Sbjct: 106 GLARQIPDGARAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRV 165 Query: 177 IAI------DHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +A + E+++ TA L + Q LV AQ +L L LR+ D Sbjct: 166 LAYGTGAVNEAPKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTD 224 >gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 38.9 bits (89), Expect = 0.73, Method: Compositional matrix adjust. Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 6/110 (5%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 I ++ D+A G ++ +++ + P D DV P + G V VP+L+G Sbjct: 66 IKAVVPVQDIAPGTILDLSMVAARSIPA----DTAPSDVITPETFDQYAGHRVNVPLLQG 121 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 PI L R L+ ++ K A T + S + G+++P DHVDV+ Sbjct: 122 RPILASYLSGRRT--LADIVDPDKLAMTFTVDNVSTLDGLLQPGDHVDVL 169 >gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] Length = 278 Score = 38.5 bits (88), Expect = 0.90, Method: Compositional matrix adjust. Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177 G L LP G RA + + GG+++P D VDVV+ R + P V+L NI+V+ Sbjct: 109 GTLPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVL 168 Query: 178 AI 179 A+ Sbjct: 169 AV 170 >gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 38.5 bits (88), Expect = 0.97, Method: Compositional matrix adjust. Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 6/119 (5%) Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIA 178 L+ +P G RA ++ + + V + D VDV+ L S +VL ++V Sbjct: 53 LTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLDRVQVFD 112 Query: 179 I----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 + D S ++ T TL +TP Q L+AA S AK+SL+ R D P + D Sbjct: 113 VTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARPHNFRD 171 >gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] Length = 298 Score = 38.5 bits (88), Expect = 0.99, Method: Compositional matrix adjust. Identities = 22/74 (29%), Positives = 39/74 (52%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 D +P+ E+ G ++ + G P+ L S LL +G+RA T+DI+ ++ Sbjct: 83 DAIRPSQFNEVAGQMLLSEMSPGRPLISAYLPGFKTRQFSDLLQEGQRAVTIDINEENST 142 Query: 143 GGMIKPNDHVDVVM 156 GM+ P+D VD+ + Sbjct: 143 AGMLVPSDLVDLFL 156 >gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 365 Score = 38.5 bits (88), Expect = 1.0, Method: Compositional matrix adjust. Identities = 44/187 (23%), Positives = 83/187 (44%), Gaps = 31/187 (16%) Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 DD+ + + ++ + P+ +G P+R + S +L G RA T++I + Sbjct: 87 YDDMIRADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDILRPGTRALTVEIDTVN 146 Query: 141 AVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLSNIRVIAIDHNID---------- 184 + +++P + VDV V S+ K +V+ N+ V+A ++ Sbjct: 147 STALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLATGEDMRPRDAGEAAQQ 206 Query: 185 ----------SDERVLVGSTATLELTPMQAKALVA-AQSVAKLSLVLRSIADL---NPSS 230 S + + +T TLE+ P+ A +A AQ + L L+LR+ D PS Sbjct: 207 DQANANSSAMSRQTGMGYTTVTLEV-PVDDVARIALAQKIGGLRLILRNSEDKGADGPSL 265 Query: 231 SEDSDVW 237 +++SDV+ Sbjct: 266 AQESDVF 272 >gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] Length = 229 Score = 38.1 bits (87), Expect = 1.2, Method: Compositional matrix adjust. Identities = 41/174 (23%), Positives = 75/174 (43%), Gaps = 29/174 (16%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ I+ A+ +GI R +S H T+ ++ PA IN + P Sbjct: 21 ILAIIFGLAVAVASGIYYQRYISTHQAMTQVIV---PAHNINAYTQ---------IKPGD 68 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L W P V G +P+ +L G + + +G+ +RLE++ G +S+ Sbjct: 69 LTWRQVPVGAVEPG---TARKPD---DLVGKVALAELYQGEQVRLERV-----GEVST-- 115 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 K+ ++I ++ + GG P D VDV +E P ++ SN R++ + Sbjct: 116 -DDKQVVAVNIDLARSGGGYFSPGDLVDVYFAE--TENVPG-AILASNARLLQL 165 >gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424] gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG 19424] Length = 316 Score = 37.7 bits (86), Expect = 1.5, Method: Compositional matrix adjust. Identities = 34/119 (28%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP--TVTVVLSNIRV 176 GL++ +P+G+RA + + VG ++P D+VDV +V R + P ++LS +RV Sbjct: 106 GLAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRV 165 Query: 177 IAI-------DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +A + ++ R TA L + Q L AQ +L L LR+ D Sbjct: 166 LAYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQD 224 >gi|194745344|ref|XP_001955148.1| GF16392 [Drosophila ananassae] gi|190628185|gb|EDV43709.1| GF16392 [Drosophila ananassae] Length = 268 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 32/108 (29%), Positives = 50/108 (46%), Gaps = 8/108 (7%) Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA 204 M K + V + VRS ++ P + S R + D ID+ E + G ++ L A Sbjct: 63 MSKDSYQVSNLEVRSNGQKTPAI----SEARASSADGFIDAIENYIRGHDVSMNLPLADA 118 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 K V+A+++A L L +L + E D DV+ GK+ I K G Sbjct: 119 KVTVSARNLANNQLSL----NLQLNGDESDDATDVEARGKKGNIFKKG 162 >gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] Length = 270 Score = 37.7 bits (86), Expect = 1.6, Method: Compositional matrix adjust. Identities = 63/235 (26%), Positives = 112/235 (47%), Gaps = 38/235 (16%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-------INVLISKGDLAVGMVV 61 I+V V A+ G+ M S TE ITE +F + V I+K DL G +V Sbjct: 6 ILVLAVIAISIGLYGMSQTST----TESPITEKVQEFDKLPEPTVMVWIAKKDLMFGSLV 61 Query: 62 TPNILE--WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 LE ++ + + F G DV + N ++L L++ IL+GD + + ++ G Sbjct: 62 QRTDLEVQRISQTQADRF-GIAHDV-KFNFNKKL---LIKKDILQGDIVTSDMVLSPGQE 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI---- 174 G L+ ++ +GK +++S + +GG I D VD+ + S SE+ + +SN+ Sbjct: 117 GYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISS-SEQNLSNDASISNVQSLK 175 Query: 175 ------RVIAIDHNIDSDERVLVGSTAT-------LELTPMQAKALVAAQSVAKL 216 +++ +D I ++ V + S +T LE++ + LV AQ +A+L Sbjct: 176 MAPLLTQIMVLDI-IQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAEL 229 >gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] Length = 258 Score = 37.4 bits (85), Expect = 1.9, Method: Compositional matrix adjust. Identities = 50/214 (23%), Positives = 87/214 (40%), Gaps = 28/214 (13%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEE----NVFDGFIDDVHQPNAMQELDGVLVR 99 K + V+++ D+A G +T ++LE FP + D V++ +A + G ++ Sbjct: 39 KQVQVVVAAQDIAQGSPITASMLETKPFPADFAPSEAVSSINDAVNRYSATNIVKGQIIT 98 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-- 157 P+L + G L+ +PKGK A + S + G I+P D VDV++ Sbjct: 99 RPLLSDT---------KQVGKLALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFF 149 Query: 158 ----------RSLSERKPTVTVVLSNIRVI-AIDHNIDSDERVLVGSTATLELTPMQAKA 206 ++ E + T L ++ V+ + SD L + P QA Sbjct: 150 VKMTSIGPDGQTSDEERATTQTTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVT 209 Query: 207 LVAAQSVAK--LSLVLRSIADLNPSSSEDSDVWD 238 L A+ K + L LR +D + D + D Sbjct: 210 LKLAKDSDKAVIDLALRGSSDDHKQHETDGETED 243 >gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 323 Score = 37.4 bits (85), Expect = 2.1, Method: Compositional matrix adjust. Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 27/178 (15%) Query: 14 VFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A+ G+ A + P V +T + P + V+++ L+ G + P+ ++ + Sbjct: 14 LLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSAGFPIPPDGVKVLH 73 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVP---ILKGDPIRLEKLVDRGNGGLSSLLPK 127 +PE F A E V+ +VP I G P+ L+ GL++ +P+ Sbjct: 74 YPE---FPA--------GAFHETAHVVGKVPQVNIGMGAPVMSSNLLS----GLATQVPE 118 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVT-VVLSNIRVIAI 179 G A +D++ + AVG ++P D+VDV ++ PT + ++L+++RV+A+ Sbjct: 119 GDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLLADLRVLAV 176 >gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] Length = 247 Score = 37.4 bits (85), Expect = 2.2, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 79/193 (40%), Gaps = 25/193 (12%) Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-----SSLLPKG 128 EN+ I PN+ Q L G + R I G P+ + L G G L S Sbjct: 65 ENIPKAAIKQGMFPNS-QNLIGKVTRTVIPAGYPVSKDFLAIEGPGSLLTTQISQFKDPK 123 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNIRVIAIDHNIDS 185 RA + + +A+ G I P D VDVV L ++P + + VIA+ + Sbjct: 124 LRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQTIGVQVPVIAVTGEPNK 183 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI------ADLNPSSSEDSDVWDV 239 V++G LTP QA+ + A++ + L L A P++S+ + Sbjct: 184 PTGVILG------LTPQQAQDVGFAETAGTIKLSLNPYQPDTNAARTTPTTSQSFIEKYI 237 Query: 240 QEEGKEIQIIKAG 252 Q++ Q I AG Sbjct: 238 QQQ----QQINAG 246 >gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50] gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 313 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%) Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + L G +VR I G+P+ L GL+ L G+RA T+ + S I P D Sbjct: 86 EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141 Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203 VD VVM R + ++ S I+V+A +D +E+ V P Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201 Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252 A L+ A +L LVLR S ED DV D+ E + ++AG Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDVDVPDLALFPERAPVLALRAG 253 Query: 253 VIVNKDGEG 261 + + +G Sbjct: 254 LTAEQQRDG 262 >gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 299 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 51/224 (22%), Positives = 96/224 (42%), Gaps = 17/224 (7%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKG--DLAVGMVVTPNILEWVA 70 GV A++ G+++ +V + ++ + E A ++ K +L G +T + Sbjct: 3 GVVAVMFGLLSAYVVRKNMMKETPPVVETTAPPKTFVVPKAAVNLPAGRTLTLGDVVIYQ 62 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGK 129 + E+ + + + + NA Q + G +R + + + G G G+ L G+ Sbjct: 63 YTEKQLEEQPLPTGYMVNATQ-IIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNLGAGQ 121 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSL---SERKPTVTVVLSNIRVIAID------ 180 RA T+ I AV G +P VDV+ +E T +L +++V+A D Sbjct: 122 RAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSSPSAL 181 Query: 181 HNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 H I +++ R+ +T TL + P +A L A +L L Sbjct: 182 HPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALAL 225 >gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] Length = 235 Score = 37.4 bits (85), Expect = 2.4, Method: Compositional matrix adjust. Identities = 34/145 (23%), Positives = 67/145 (46%), Gaps = 5/145 (3%) Query: 14 VFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 +F+ + ++ + L++ + Q T + E +V++ DL VG ++ + L +P Sbjct: 12 IFSSIISMVTIFLINQYLQQETSRRLQEASGNADSVVVFSKDLNVGDILEVSDLLVRKYP 71 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 E + + + + +A + G +R + G+P+ L + N GLS +LP G A Sbjct: 72 HELINEHW----YLESAANLIIGRKLRSSVKSGEPVSERVLSNNQNNGLSEVLPNGYYAI 127 Query: 133 TMDISISSAVGGMIKPNDHVDVVMV 157 T+ ++K D VD+V V Sbjct: 128 TVTTDNLGHHNALLKVGDLVDIVFV 152 >gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 213 Score = 37.0 bits (84), Expect = 2.5, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 49/107 (45%), Gaps = 11/107 (10%) Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179 +L +G R T+ +++ S++ G IKP D VDV E+ V+ + + + I Sbjct: 105 VLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNKS 164 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D N D L+ + TL +TP QA A+ ++ L L+ Sbjct: 165 GGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFLM 211 >gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822] gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis] Length = 313 Score = 37.0 bits (84), Expect = 2.7, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%) Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + L G +VR I G+P+ L GL+ L G+RA T+ + S I P D Sbjct: 86 EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141 Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203 VD VVM R + ++ S I+V+A +D +E+ V P Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201 Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252 A L+ A +L LVLR S ED DV D+ E + ++AG Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDVDVPDLALFPERAPVLALRAG 253 Query: 253 VIVNKDGEG 261 + + +G Sbjct: 254 LTAEQQRDG 262 >gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I] gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS] Length = 313 Score = 37.0 bits (84), Expect = 3.1, Method: Compositional matrix adjust. Identities = 51/189 (26%), Positives = 76/189 (40%), Gaps = 30/189 (15%) Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + L G +VR I G+P+ L GL+ L G+RA T+ + S I P D Sbjct: 86 EALLGQMVRQDIPAGEPVTAPMLAR----GLARHLAPGERAVTIAVDELSGAQNRILPGD 141 Query: 151 HVD--VVMVRSLSERKPTVTVVLSNIRVIA-----IDHNIDSDERVLVGSTATLELTPMQ 203 VD VVM R + ++ S I+V+A +D +E+ V P Sbjct: 142 LVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRN 201 Query: 204 A---------KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ--EEGKEIQIIKAG 252 A L+ A +L LVLR S ED DV D+ E + ++AG Sbjct: 202 AMLAVPVERVNELLLAAKAGRLQLVLR--------SPEDIDVPDLALFPERAPVLALRAG 253 Query: 253 VIVNKDGEG 261 + + +G Sbjct: 254 LTAEQQRDG 262 >gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] Length = 316 Score = 37.0 bits (84), Expect = 3.2, Method: Compositional matrix adjust. Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 7/99 (7%) Query: 89 AMQELDGVLVRV---PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 A Q+LD VL R P+ G L+ + G L+ ++ +RA + + G Sbjct: 94 AFQQLDQVLGRSSSRPLAAGS--WLDDSSFQAGGPLARMIRANERAVAVAVDDVIGAAGQ 151 Query: 146 IKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIAIDHN 182 ++P D VDV++ P + VVL +RV+++DH Sbjct: 152 LRPGDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQ 190 >gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] Length = 305 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 62/244 (25%), Positives = 101/244 (41%), Gaps = 37/244 (15%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 LT+++ + + + AL+ GI A L PAK V+++ L G + Sbjct: 5 LTKILAVALIAI-ALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQPIP 63 Query: 63 PNIL---EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + L + A PE F D V ++ RVPI P + L + Sbjct: 64 ADGLKVQQAAALPE----GAFADPVQ----------IVGRVPIAD-VPEQAAVLESSLSS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVT---------- 168 G++ + G+RA + + ++AVG ++P + VDV + ++ S T+ Sbjct: 109 GVADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKT 168 Query: 169 ---VVLSNIRVIAIDHNI---DSDERVLVG-STATLELTPMQAKALVAAQSVAKLSLVLR 221 ++LS IRVIA DS L G TA L + Q AL ++ L+L LR Sbjct: 169 QAKLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALR 228 Query: 222 SIAD 225 + D Sbjct: 229 NPRD 232 >gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 301 Score = 36.6 bits (83), Expect = 3.2, Method: Compositional matrix adjust. Identities = 36/123 (29%), Positives = 59/123 (47%), Gaps = 17/123 (13%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV----------VMVRSLSERKPTVT- 168 GL+ L G+RA + + ++AVG ++P ++VDV V + S + T Sbjct: 108 GLAEQLAPGERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQ 167 Query: 169 --VVLSNIRVIAIDHNI---DSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRS 222 +++S +RV++ DS +VG+ TA L + Q AL A+ +L L LRS Sbjct: 168 ARLLMSKVRVLSFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRS 227 Query: 223 IAD 225 D Sbjct: 228 PRD 230 >gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 316 Score = 36.6 bits (83), Expect = 3.3, Method: Compositional matrix adjust. Identities = 43/164 (26%), Positives = 66/164 (40%), Gaps = 29/164 (17%) Query: 91 QELDGVLVRVPILKGDPIRLEKL-----VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 +E+ G+ V PI +G+ + + V RG LLP G+RA + + VGG Sbjct: 93 EEVIGLRVEAPIQEGELLTAPRFSVASQVSRG------LLP-GERAVAISVDDVIGVGGY 145 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-------------DSDERVLVG 192 + P D VDV++ S ++ NIRV+A ++ + +R Sbjct: 146 LSPGDRVDVMLYLSQRGVGEIGRLLHPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGA 205 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSI----ADLNPSSSE 232 TA L L L+ A S L L R D +P + E Sbjct: 206 RTAVLALPEEDVATLLLADSAGTLRLAARPAIERRPDFDPEAFE 249 >gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 226 Score = 36.6 bits (83), Expect = 3.5, Method: Compositional matrix adjust. Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 19/146 (13%) Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG--MIKPND 150 L G RV I GDP+ L GL L G+RA I++ VGG I P D Sbjct: 73 LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVA--IAVDEVVGGGNRIAPGD 126 Query: 151 HVDVVMV--RSLSERKPTVTVVLSNIRVIAID-HNIDS--DERVLVGS------TATLEL 199 VDV + + + + ++ S +RV+A ++D D+ L G TA L + Sbjct: 127 LVDVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAV 186 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIAD 225 Q L+ A +L L LR + D Sbjct: 187 PVEQVSELLLAGRSGRLQLALRPVGD 212 >gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 302 Score = 36.6 bits (83), Expect = 3.6, Method: Compositional matrix adjust. Identities = 38/141 (26%), Positives = 61/141 (43%), Gaps = 27/141 (19%) Query: 108 IRLEKLVDRGNGGLSSLL----PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----- 158 I L L+ R G+ S L P G RA ++D + AV G+I+P D VDV +V Sbjct: 98 IGLHALIARDAVGMESKLAIRVPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADA 157 Query: 159 ---SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS---------------TATLELT 200 + + +L ++V+A+ + ++ + T TL LT Sbjct: 158 ISGARGSGRSRAQALLQMVQVLAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALT 217 Query: 201 PMQAKALVAAQSVAKLSLVLR 221 P Q L A+++ L+L LR Sbjct: 218 PEQVSILSLAKNIGALTLSLR 238 >gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 366 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 74/166 (44%), Gaps = 29/166 (17%) Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 P+ +G P+R + S +L G RA T+DI ++ M++P + VDV + + Sbjct: 107 PVRRGLPLRAADIDALHGRDFSDVLRSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKV 166 Query: 161 SER------KPTVTVVLSNIRVIAIDHNI---DSDERVL----------------VG-ST 194 + K ++L+N ++A ++ D+ E + VG +T Sbjct: 167 YHQDNSNDDKKVAQLMLANTLILATGQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTT 226 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADL---NPSSSEDSDVW 237 TLE+ A + AQ + L L+LR+ D PS +++DV+ Sbjct: 227 VTLEVPVADAGRIALAQKIGGLRLILRNSDDKGTNGPSLVQENDVF 272 >gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 363 Score = 36.6 bits (83), Expect = 4.0, Method: Compositional matrix adjust. Identities = 20/80 (25%), Positives = 39/80 (48%) Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 D DD+ +P + + P+ +G P+R + S +LP G+RA T++I Sbjct: 84 DLVYDDMVRPENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDVLPAGQRAVTVEID 143 Query: 138 ISSAVGGMIKPNDHVDVVMV 157 ++ +++P + VDV + Sbjct: 144 TVNSTALLLRPGNRVDVYWI 163 >gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae subsp. damselae] gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae] Length = 267 Score = 36.6 bits (83), Expect = 4.1, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 38/231 (16%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +++ G++ L A L +P E I E P I V D+ G + N+L Sbjct: 13 VILFGLYGL-----ATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEFIERNMLSV 65 Query: 69 VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126 PE GF+DDV+ + + + + G + ++ LV +G + ++ Sbjct: 66 ENIPESEANGLGFVDDVN----LDWKAKTVFKSHLSAGSLLTIDDLVQPDQDGYIDFIID 121 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKPTVTVVLSN 173 + K + ++ SS +GG+I VD++ + L S+ ++T ++S Sbjct: 122 ENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTVSITPIISA 181 Query: 174 IRVIAIDHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 ++V+ + H + SDE+V T +ELT QA L AQ ++++ Sbjct: 182 VKVLLVKHQLIDTNRQSDTSDEQV----TLVVELTRKQAVVLTVAQRISEI 228 >gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191] gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191] Length = 253 Score = 36.2 bits (82), Expect = 4.4, Method: Compositional matrix adjust. Identities = 56/257 (21%), Positives = 113/257 (43%), Gaps = 62/257 (24%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEE---------VITENPAKFINVLISKGDLAVG 58 G+ + V A++A ++ ++ + + EE I + P + + I+KGDL G Sbjct: 4 GVFLPLVIAILAAVVYFIILFSNQSKFEENSKLERVVIAIRDLPERKV---ITKGDL--G 58 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV-RVPILKGDPIRLEKLVDRG 117 ++ PN F +++ F V + + + +L+ LV R+ I KG+ + Sbjct: 59 VIEMPN-----KFLQKDAFT-----VTRDSDITKLENNLVTRIAIPKGNQV--------S 100 Query: 118 NGGLSSLLPKGKRAATMD--------ISISSAVGGMIKPNDHVDVVM-----VRSLSERK 164 L+SL P+ +A + + S+V +IKP+D VDV++ +++ +++ Sbjct: 101 KAALTSLSPEAGLSARVSPLWRGFVLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKE 160 Query: 165 PTVTVVLSNIRVIAIDHNID----------SDERVLVGSTA------TLELTPMQAKALV 208 +L I+V+ + +++ + ER S +L L P A+ L Sbjct: 161 KITATILQRIKVLGVGNDLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLA 220 Query: 209 AAQSVAKLSLVLRSIAD 225 A+ ++LV+R D Sbjct: 221 LAKEEGIITLVVRRRED 237 >gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] Length = 267 Score = 36.2 bits (82), Expect = 4.5, Method: Compositional matrix adjust. Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 38/231 (16%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +++ G++ L A L +P E I E P I V D+ G + N+L Sbjct: 13 VILFGLYGL-----ATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEFIERNMLSV 65 Query: 69 VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126 PE GF+DDV+ + + + + G + ++ LV +G + ++ Sbjct: 66 ENIPESEANGLGFVDDVN----LDWKAKTVFKSHLSAGSLLTIDDLVQPDQDGYIDFIID 121 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKPTVTVVLSN 173 + K + ++ SS +GG+I VD++ + L S+ ++T ++S Sbjct: 122 ENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTVSITPIISA 181 Query: 174 IRVIAIDHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 ++V+ + H + SDE+V T +ELT QA L AQ ++++ Sbjct: 182 VKVLLVKHQLIDTNRQSDTSDEQV----TLVVELTRKQAVVLTVAQRISEI 228 >gi|224539927|ref|ZP_03680466.1| hypothetical protein BACCELL_04839 [Bacteroides cellulosilyticus DSM 14838] gi|224518481|gb|EEF87586.1| hypothetical protein BACCELL_04839 [Bacteroides cellulosilyticus DSM 14838] Length = 382 Score = 36.2 bits (82), Expect = 4.6, Method: Compositional matrix adjust. Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 8/87 (9%) Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQA--KALVAAQSVAKLSLVLRS-----IAD 225 ++R +A + + D D V+V T +ELT + + A V +L LV+R+ + D Sbjct: 225 SVRAVAGNTSADLDLEVVVTGTYQMELTTPRGLLSTEITAGDVKRLELVVRNTGSSLLKD 284 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAG 252 + SS + D W+V E +I+I+KAG Sbjct: 285 IQLSSGKPKD-WEVSFEPAKIEILKAG 310 >gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] Length = 258 Score = 36.2 bits (82), Expect = 4.7, Method: Compositional matrix adjust. Identities = 32/104 (30%), Positives = 48/104 (46%), Gaps = 10/104 (9%) Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNI 183 L G+R + I+ + V G + VDV +E+ P + VL+N+ V+ + +I Sbjct: 117 LENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEVLDV-GDI 175 Query: 184 DSDERVLVGST-----ATLELTPMQAKALVAAQSVA---KLSLV 219 S G T T LTP QA L A+S A +L+LV Sbjct: 176 GSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALV 219 >gi|187935275|ref|YP_001885712.1| PTS system, beta-glucoside-specific IIABC component [Clostridium botulinum B str. Eklund 17B] gi|187723428|gb|ACD24649.1| PTS system, beta-glucoside-specific IIABC component [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 16/133 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + ++G +G++A ++G++ VSP I ENP I+ LI+ A+ VVT Sbjct: 384 IAAMIGGGCAGIYAGLSGLVRYAFVSPGLAALPAFIGENPMNIIHALIT---CAIAFVVT 440 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQ-------ELDGVLVRVPILKGDPIRLEKLVD 115 L W+ E+ + D ++V + N+ + E++G + V L G I L K+ D Sbjct: 441 -FALTWIIGFEDPIDD---EEVKENNSTEIKSEEKVEINGSMEIVSPLSGKLIPLSKVND 496 Query: 116 RGNGGLSSLLPKG 128 G LL KG Sbjct: 497 DVFSG--ELLGKG 507 >gi|158337969|ref|YP_001519145.1| bifunctional protein FolD [Acaryochloris marina MBIC11017] gi|190359419|sp|B0C3J3|FOLD_ACAM1 RecName: Full=Bifunctional protein FolD; Includes: RecName: Full=Methylenetetrahydrofolate dehydrogenase; Includes: RecName: Full=Methenyltetrahydrofolate cyclohydrolase gi|158308210|gb|ABW29827.1| bifunctional protein FolD [Acaryochloris marina MBIC11017] Length = 295 Score = 35.8 bits (81), Expect = 5.5, Method: Compositional matrix adjust. Identities = 37/137 (27%), Positives = 59/137 (43%), Gaps = 32/137 (23%) Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPI------------------LKG-DPIRLE 111 FP E F+ +H NA ++DG+LV++P+ + G P+ L Sbjct: 73 FPAEVTFEEVKQTIHDLNANPQVDGILVQLPLPAHLDSTALLYEIDPDKDVDGLHPLNLG 132 Query: 112 KLVDRGNGGLSSLLPKG--KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169 +LV RG GL S P G + A D+ +S H VV+ RS+ KP + Sbjct: 133 RLV-RGEAGLRSCTPAGVMRLLAAYDVELSGL---------HA-VVIGRSILVGKPVSLM 181 Query: 170 VLSNIRVIAIDHNIDSD 186 +L+ + + H+ D Sbjct: 182 LLAANATVTMAHSRTPD 198 >gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 301 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 43/153 (28%), Positives = 66/153 (43%), Gaps = 34/153 (22%) Query: 119 GGLSSLLPK----GKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKP 165 GGL+S L G+RA + + S+AVG ++P + VDV + ++ SE Sbjct: 104 GGLTSGLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPA 163 Query: 166 T-VTVVLSNIRVIAI-DHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVL 220 T ++LS +RV++ D D D TA L + Q AL A++ +L+L L Sbjct: 164 TQARLLLSKVRVLSFGDATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLAL 223 Query: 221 RSIADL----------------NPSSSEDSDVW 237 R+ D PS+ S VW Sbjct: 224 RNPRDTEIATQTVAVRTGGGEATPSAQAASGVW 256 >gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 279 Score = 35.8 bits (81), Expect = 6.0, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 84/191 (43%), Gaps = 16/191 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 E+ ++ L++ DL G +TP L P + I +P + G + Sbjct: 45 EHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDGDSVLGTRLG 100 Query: 100 VPILKGDPIRLEKLVDRGNGG----LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + +GDP+ L + R + L++ L G+RA + ++ V +++ D VD+ Sbjct: 101 LALAQGDPV-LSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLRVGDLVDIY 159 Query: 156 MVRSLSERKPTVTV-VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + S R VT +L +RV+A+ V TL TP QA +AA+ Sbjct: 160 V--SFPHRGREVTTPLLQGVRVLAVPDAGGGTGPAQV----TLAATPNQAMRYLAARRAG 213 Query: 215 KLSLVLRSIAD 225 L+ ++R+ AD Sbjct: 214 TLTGLVRNRAD 224 >gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] Length = 273 Score = 35.8 bits (81), Expect = 6.8, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 93/220 (42%), Gaps = 20/220 (9%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + GI+ AL + A +L + Q E + + V ++ D+A G V Sbjct: 8 VFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETVDETN 67 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV---PILKGDPIRLEKLVDRGNGGLS 122 E + ++ ++ +A+ +L G+ RV PI++G+ I ++ V + L Sbjct: 68 AE---------YRMWLVELLPHDAVSDLAGLESRVATSPIVQGEVISAQRFV-ADDEALG 117 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + +P+G A ++ + VGG I+ VDV + T T +L++ ++ Sbjct: 118 TPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYV------SSGTTTDLLAHDVLVLFTSA 171 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +D + S ATL + P + L++A L L S Sbjct: 172 SSADGSEAI-SWATLAVEPEMVQELISAAERTSLYFSLPS 210 >gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 318 Score = 35.8 bits (81), Expect = 7.0, Method: Compositional matrix adjust. Identities = 32/119 (26%), Positives = 56/119 (47%), Gaps = 13/119 (10%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSER--KPTVTVVLSNIRV 176 GL++ +P+G+RA + + VG ++P D+VDV +V R S+ ++L +RV Sbjct: 107 GLAAQIPEGERAVAIAVDEVIGVGNQVQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRV 166 Query: 177 IAI------DHNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +A + E+++ TA L + Q L AQ +L + LR+ D Sbjct: 167 LAYGSGAVNEPQKQQPEQMMTRREGAKTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHD 225 >gi|189465679|ref|ZP_03014464.1| hypothetical protein BACINT_02039 [Bacteroides intestinalis DSM 17393] gi|189433943|gb|EDV02928.1| hypothetical protein BACINT_02039 [Bacteroides intestinalis DSM 17393] Length = 382 Score = 35.4 bits (80), Expect = 7.4, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 48/87 (55%), Gaps = 8/87 (9%) Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQA--KALVAAQSVAKLSLVLRS-----IAD 225 ++R +A + + D D V+V T +ELT + + A V +L LV+R+ + D Sbjct: 225 SVRAVAGNTSADLDLEVVVTGTYQMELTTPRGLLSTEITAGDVKRLELVVRNTGSSLLKD 284 Query: 226 LNPSSSEDSDVWDVQEEGKEIQIIKAG 252 + SS + +D W+V E +I+++KAG Sbjct: 285 IQLSSGKPTD-WEVSFEPAKIEMLKAG 310 >gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 212 Score = 35.4 bits (80), Expect = 8.1, Method: Compositional matrix adjust. Identities = 27/102 (26%), Positives = 48/102 (47%), Gaps = 13/102 (12%) Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---------- 179 R T+ ++++S++ G IKP D VD+ V + +V +++ + Sbjct: 110 RRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNKSGEDVRK 169 Query: 180 -DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D N D+ L+ + TL +TP Q A++ + AK SL L Sbjct: 170 ADKNNQYDKESLIPAAVTLIVTPEQ--AVIIKEYEAKGSLFL 209 >gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis EO147] Length = 226 Score = 35.4 bits (80), Expect = 8.5, Method: Compositional matrix adjust. Identities = 35/117 (29%), Positives = 57/117 (48%), Gaps = 14/117 (11%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPT--------VTVV 170 GL+ + G+RA + + ++AVG ++P + VDV M ++ S T ++ Sbjct: 109 GLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLL 168 Query: 171 LSNIRVIAI-DHNIDSDER---VLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRS 222 LS +RV++ D D D G+ TA L + Q AL A++ +L L LRS Sbjct: 169 LSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRS 225 >gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 317 Score = 35.4 bits (80), Expect = 8.9, Method: Compositional matrix adjust. Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 13/120 (10%) Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP--TVTVVLSNIR 175 GL++ + +G+RA + + VG ++P D+VDV +V R + P ++LS +R Sbjct: 106 AGLATQVREGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPESQARMLLSRLR 165 Query: 176 VIAI-------DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V+A N ++ R TA L + Q L AQ +L L LR+ D Sbjct: 166 VLAYGVASVNRPQNAKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQD 225 >gi|29345660|ref|NP_809163.1| dihydroorotase [Bacteroides thetaiotaomicron VPI-5482] gi|253567647|ref|ZP_04845058.1| dihydroorotase [Bacteroides sp. 1_1_6] gi|29337552|gb|AAO75357.1| dihydroorotase (DHOase) [Bacteroides thetaiotaomicron VPI-5482] gi|251841720|gb|EES69800.1| dihydroorotase [Bacteroides sp. 1_1_6] Length = 445 Score = 35.0 bits (79), Expect = 9.4, Method: Compositional matrix adjust. Identities = 28/110 (25%), Positives = 51/110 (46%), Gaps = 9/110 (8%) Query: 73 EENVFDGFIDDV---HQPNAMQELDGVLVRV----PILKGDPIRLEKLVDRGNGGLSSLL 125 +E V G ID + H P+++ E +G ++V P ++ + + +L D+G + ++ Sbjct: 297 QEAVNSGLIDAIATDHAPHSLSEKEGGALKVMSGMPTIQFSLVSMLELADKGAFSIEKVV 356 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 K A I + G I+ D+V+VR SE T +LS + Sbjct: 357 EKMSHAPAQMYEIRNR--GFIRKGYQADLVLVRPDSEWTVTTDCILSKCK 404 >gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria AMMD] gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria AMMD] Length = 301 Score = 35.0 bits (79), Expect = 10.0, Method: Compositional matrix adjust. Identities = 41/148 (27%), Positives = 64/148 (43%), Gaps = 30/148 (20%) Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPT-VTV 169 GL+ + G+RA + + S+AVG ++P + VDV + + SE T + Sbjct: 109 GLADQVALGERAVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARL 168 Query: 170 VLSNIRVIAI-DHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +LS +RV++ D D D G TA L + Q AL A++ +L+L LR+ D Sbjct: 169 LLSRVRVLSFGDATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRD 228 Query: 226 L----------------NPSSSEDSDVW 237 PS+ S VW Sbjct: 229 TEIATQTVAVRTGGGGATPSAQAASGVW 256 Searching..................................................done Results from round 2 >gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] gi|254040405|gb|ACT57201.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Length = 263 Score = 319 bits (818), Expect = 3e-85, Method: Composition-based stats. Identities = 263/263 (100%), Positives = 263/263 (100%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV Sbjct: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG Sbjct: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID Sbjct: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ Sbjct: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 Query: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 EEGKEIQIIKAGVIVNKDGEGIS Sbjct: 241 EEGKEIQIIKAGVIVNKDGEGIS 263 >gi|315121892|ref|YP_004062381.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495294|gb|ADR51893.1| pilus assembly protein [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 267 Score = 280 bits (716), Expect = 1e-73, Method: Composition-based stats. Identities = 164/266 (61%), Positives = 213/266 (80%), Gaps = 3/266 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TRLMG+VVSG+FAL+AGIIAMRLVS HH+Q EE++ + + NVL++K +L VGMV Sbjct: 1 MKFTRLMGLVVSGLFALLAGIIAMRLVSHHHLQKEEIVAQPSIRLSNVLMAKSNLKVGMV 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +TP++LEWVAFP ENV GF+DDV +PNA++EL G +VR+PILKGDPIR EKLVD G G Sbjct: 61 ITPDVLEWVAFPAENVVVGFVDDVSRPNAIEELKGSIVRIPILKGDPIRFEKLVDHGQHG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLL KGKRA +DIS+S+AVGG++KPNDHVDV+MVR + ERK VVLSN+RV+AID Sbjct: 121 VSSLLSKGKRAVALDISVSNAVGGLVKPNDHVDVLMVRLIGERKTKTDVVLSNVRVLAID 180 Query: 181 HNIDSDERV--LVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDVW 237 +D++ L+G+TATLELTPMQAK L+AAQ +A KL+LVLRSI+D + + E +D Sbjct: 181 QTLDAEGEPNGLIGNTATLELTPMQAKTLLAAQQIASKLTLVLRSISDFHSTDLEIADFN 240 Query: 238 DVQEEGKEIQIIKAGVIVNKDGEGIS 263 ++ G+ IQ+IK+G+I NKDGE +S Sbjct: 241 LGEDGGRGIQVIKSGIISNKDGEEMS 266 >gi|227823970|ref|YP_002827943.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|227342972|gb|ACP27190.1| pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 271 Score = 249 bits (635), Expect = 4e-64, Method: Composition-based stats. Identities = 104/264 (39%), Positives = 165/264 (62%), Gaps = 7/264 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ + V+ A +AG++AM+L SP E ++ + P+ INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRSPAQRMAEPLVEQAPS--INVLVASKSLPVGS 58 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + + W+A+P++ V +G I + ++P A+ +L G +VR+P+ G+P+R EK+ D N Sbjct: 59 RLGADSIHWLAWPKDGVAEGMITEENRPAAIDDLAGAVVRLPLFDGEPVRQEKIADPSNR 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AI Sbjct: 119 IMSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDVYLTETVLSNVRVLAI 178 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D ++ + + ++G+TATLELTP Q+K + AQ +A ++SL LRS+AD + +E +D Sbjct: 179 DQQVEEKDDGSKSVIGTTATLELTPDQSKVMTVAQQMAERISLALRSVADAQEADTEAAD 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 239 YLLSGDGQPSIQVIKSGSIVKNDG 262 >gi|15963893|ref|NP_384246.1| putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|307315790|ref|ZP_07595304.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307320425|ref|ZP_07599842.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|15073068|emb|CAC41527.1| Putative pilus assembly signal peptide protein [Sinorhizobium meliloti 1021] gi|306893991|gb|EFN24760.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306898558|gb|EFN29231.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 269 Score = 248 bits (633), Expect = 8e-64, Method: Composition-based stats. Identities = 107/263 (40%), Positives = 161/263 (61%), Gaps = 5/263 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ R++ + V+ A +AG++AM+L QT E + E A INVL++ L VG Sbjct: 1 MRPVRIIILAVAIGSAAMAGLLAMKLTRAPAPQTAEPVIEQ-APTINVLVAGKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W A+P++ V +G I + ++P A+++L G +VR+PI G+P+R EK+ D N Sbjct: 60 LGADSIHWKAWPKDGVAEGMITEENRPAAVEDLAGAVVRLPIFTGEPVRQEKIADASNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ E + +VG+TATLELTP Q+K + AQ +A ++SL LRS+AD + +D Sbjct: 180 QQIEEKEDGSKAVVGTTATLELTPDQSKVMTVAQQMADRISLALRSVADAQEPDTTAADY 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 240 LLNGDGRPSIQVIKSGSIVKGDG 262 >gi|150398540|ref|YP_001329007.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150030055|gb|ABR62172.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 269 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 104/263 (39%), Positives = 158/263 (60%), Gaps = 5/263 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ + V+ A +AG++AM+L + E + E A INVL++ L VG Sbjct: 1 MKPVRIIILAVAVGSAAMAGLLAMKLTRAPAARMAEPVIEQ-APTINVLVAGKSLPVGSR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W A+P++ + +G I + +P+A+ +L G +VR+PI G+P+R EK+ D N Sbjct: 60 LGADSIHWKAWPKDGIAEGMITEETRPSAVDDLAGAVVRLPIFTGEPVRQEKIADASNRI 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +I++++ GG I PND VDV+MVR VLSN+RV+AID Sbjct: 120 MSSLLPAGKRAVATEITVATGAGGFILPNDRVDVIMVRKSDGDLYLTETVLSNVRVLAID 179 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ E + +VG+TATLELTP Q+K + Q +A ++SL LRS+AD + +D Sbjct: 180 QQIEEKEDGTKAVVGTTATLELTPDQSKVMTVTQQMADRISLALRSVADAQEPDTTAADH 239 Query: 237 WDVQEEGKEIQIIKAGVIVNKDG 259 + IQ+IK+G IV DG Sbjct: 240 LLNGDGQPSIQVIKSGSIVKGDG 262 >gi|239833238|ref|ZP_04681567.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] gi|239825505|gb|EEQ97073.1| Flp pilus assembly protein CpaB [Ochrobactrum intermedium LMG 3301] Length = 279 Score = 242 bits (618), Expect = 4e-62, Method: Composition-based stats. Identities = 95/266 (35%), Positives = 142/266 (53%), Gaps = 12/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 9 MKSARLLILGVAVLAAGGAGYIAMNLATPPPAPVVAAPEAPQIKLEDVLVATENLGVGAE 68 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + W +P E + +G+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 69 LT-SQMRWQPWPAEAISEGYITRASEPDAINQLSGATVRLQFFTGEPIRKAKLIGPGQSF 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174 +SS+LP G RA I+ S+ GG I PND VDV+M R + T VL N+ Sbjct: 128 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 187 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE +V+VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 188 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDRD 247 Query: 231 SEDSDVWDVQE-EGKEIQIIKAGVIV 255 + +D +++IK+G + Sbjct: 248 IKQADYLVSSPTRSGTVKVIKSGSVT 273 >gi|153008058|ref|YP_001369273.1| SAF domain-containing protein [Ochrobactrum anthropi ATCC 49188] gi|151559946|gb|ABS13444.1| SAF domain protein [Ochrobactrum anthropi ATCC 49188] Length = 271 Score = 241 bits (615), Expect = 9e-62, Method: Composition-based stats. Identities = 97/266 (36%), Positives = 142/266 (53%), Gaps = 12/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ + A AG IAM L +P K +VL++ +L VG Sbjct: 1 MKSARLLILGVAVLAAGGAGYIAMNLAAPPPAPVVVAPETPQMKLEDVLVATENLGVGAE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + W +P E V DG+I +P+A+ +L G VR+ G+PIR KL+ G Sbjct: 61 LT-SQMRWQPWPAEAVSDGYITRASEPDAINQLSGATVRLQFFTGEPIRKTKLIGPGQSF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNI 174 +SS+LP G RA I+ S+ GG I PND VDV+M R + T VL N+ Sbjct: 120 MSSILPPGMRAVATQINAESSAGGFILPNDFVDVIMTRRKPDNGDKSLTPFTTETVLQNV 179 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE +V+VG TATLE+TP QA+ + AQ +A +L+L LRS D+ Sbjct: 180 RVLAIDQAIQEDEQGRKVMVGQTATLEVTPEQAEIITVAQQMADRLTLALRSTQDVEDKD 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255 + +D +++IK+G + Sbjct: 240 IKQADYLVSSPTRSGTVKVIKSGSVT 265 >gi|325291660|ref|YP_004277524.1| components of type IV pilus [Agrobacterium sp. H13-3] gi|325059513|gb|ADY63204.1| components of type IV pilus [Agrobacterium sp. H13-3] Length = 268 Score = 237 bits (606), Expect = 1e-60, Method: Composition-based stats. Identities = 111/268 (41%), Positives = 159/268 (59%), Gaps = 6/268 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R++ + V+ V A +AGI+AM++ V + +NVL+S +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGIVAMQISGAKQVIEKAETIIEKEPTVNVLVSSVNLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +P NV D FI + PNA+ EL G +VR+P+ +G+P+R EK+VD Sbjct: 61 LNDSSVHWTPWPTGNVIDSFITEAKNPNAITELSGAVVRLPLFQGEPVRPEKVVDSSTRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+AID Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGDSGHFLTENVLNNVRVLAID 180 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + + Sbjct: 181 QQIKEGEDGTSAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGY 240 Query: 237 WDVQEEG-KEIQIIKAGVIVNKDGEGIS 263 G EIQ+IK+G IV K G+G S Sbjct: 241 LLNGGSGQPEIQVIKSGSIV-KAGQGAS 267 >gi|15887574|ref|NP_353255.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] gi|15155111|gb|AAK86040.1| components of type IV pilus [Agrobacterium tumefaciens str. C58] Length = 268 Score = 237 bits (605), Expect = 1e-60, Method: Composition-based stats. Identities = 111/268 (41%), Positives = 160/268 (59%), Gaps = 6/268 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R++ + V+ V A +AG++AM++ V + +NVLIS +L VG Sbjct: 1 MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPTVNVLISSVNLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +P+ NV D FI +P+A+ EL G +VR+P+ +G+PIR EK+VD Sbjct: 61 LNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSSTRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +SSLLP GKRA +IS+S+ GG + PND VDV+MVR VL+N+RV+AID Sbjct: 121 MSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLAID 180 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I E +VG+TATLELTP QAK + AQ +A +L+L LRS+AD + + + Sbjct: 181 QQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGH 240 Query: 237 WDVQEEG-KEIQIIKAGVIVNKDGEGIS 263 G EIQ+IK+G IV K G+G S Sbjct: 241 LLSGSSGQPEIQVIKSGSIV-KSGQGAS 267 >gi|92116014|ref|YP_575743.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] gi|91798908|gb|ABE61283.1| Flp pilus assembly CpaB [Nitrobacter hamburgensis X14] Length = 260 Score = 236 bits (602), Expect = 2e-60, Method: Composition-based stats. Identities = 90/262 (34%), Positives = 139/262 (53%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ V A+ AG +A L S + + T + ++VL++K D+ +G Sbjct: 1 MNTARI----VVLTIAVGAGGLAAYLASGSDKKPQPAQTAQ-LQTVDVLVAKSDIPLGQA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 VT N + W A+P + FI +P+A +L G + R P + G+PIR KLV +G+G Sbjct: 56 VTANDVAWQAWPANSASSSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ + +LSN Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSQRDKNPDHPNANSVNSETILSN 175 Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N S Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEMLARSRQMGTLSLALRSLADANAPES 235 Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253 D + I I++ GV Sbjct: 236 STDD-----QRRDSINIVRYGV 252 >gi|75674500|ref|YP_316921.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] gi|74419370|gb|ABA03569.1| Flp pilus assembly CpaB [Nitrobacter winogradskyi Nb-255] Length = 275 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 93/262 (35%), Positives = 146/262 (55%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ V A+ AG +A L S +T+ V TE + ++VL++K D+ +G Sbjct: 16 MNTARI----VVLTIAVGAGGLAAYLASGSDKETQPVQTEQ-LRTVDVLVAKSDIPLGQA 70 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 VT N + W +P ++ FI +P+A +L G + R P + G+PIR KLV +G+G Sbjct: 71 VTANDVAWQTWPADSASHSFIRRDQRPDATTQLAGSIARSPFIAGEPIRELKLVSAKGSG 130 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ + S VL N Sbjct: 131 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKREKNADHASGDSVNSETVLGN 190 Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+AID I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N + Sbjct: 191 VRVLAIDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADAN---A 247 Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253 + D+ D + + I +++ GV Sbjct: 248 PEGDINDRRRD--SINVVRYGV 267 >gi|316933040|ref|YP_004108022.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] gi|315600754|gb|ADU43289.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris DX-1] Length = 266 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 139/266 (52%), Gaps = 19/266 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGM 59 M R+ V A+ AG +A L S Q + + + VL++K D+ +G Sbjct: 7 MNTARI----VVLTIAVGAGGVAAYLASTAGPQPQAPAEPVARMQTVEVLVAKNDIPLGQ 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGN 118 V P L+W +P FI QPNA +L G + R P + G+PIR +KLV G+ Sbjct: 63 AVAPGDLQWQTWPSATASSHFIRRNDQPNATTDLAGSIARSPFIAGEPIREQKLVKANGS 122 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLS 172 G ++++LP G RA + +IS + GG I PND VDV++ + S + ++LS Sbjct: 123 GFMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKREKNSDRPSGEQIVSEIILS 182 Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+A+D I+ ++V+VG TATLEL P QA+ L A+ L+L LRS+AD S Sbjct: 183 NVRVLAVDQTIEEKNGQKVVVGKTATLELKPEQAEYLARARQSGTLALALRSLADAGQPS 242 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256 + ++D + + I++ GV Sbjct: 243 TTENDA-----KRDSVNIVRYGVTTQ 263 >gi|222084468|ref|YP_002542997.1| pilus assembly protein [Agrobacterium radiobacter K84] gi|221721916|gb|ACM25072.1| pilus assembly protein [Agrobacterium radiobacter K84] Length = 270 Score = 234 bits (598), Expect = 8e-60, Method: Composition-based stats. Identities = 102/262 (38%), Positives = 158/262 (60%), Gaps = 5/262 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R+M + V+ V A +AG++AM L ++ + +NVL++ +L VG Sbjct: 1 MKPARIMILAVAVVTAGLAGLLAMHLAGSRNIVQQVETVVEKEATVNVLVADANLPVGSR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I +P+A+++L+G +VR+PI +G+PIR EK+ D + Sbjct: 61 LNEKSIHWMAWPQSGVVKGLITQAERPDALKDLNGAVVRLPIFEGEPIREEKVADASSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +K VLSN+R++A+D Sbjct: 121 LSSLLPSGKRAVATEISVATGAGGFILPNDRVDVIMVRKGDTQKFVTETVLSNVRILAVD 180 Query: 181 HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSDV 236 I+ + + +VG+TATLELTP Q K L AQ +A +L+L LRS+AD + +D Sbjct: 181 QQIEEKQDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLTLALRSVADAQQPDTTAADY 240 Query: 237 WDVQEE-GKEIQIIKAGVIVNK 257 + G +Q+IK+G I+ Sbjct: 241 LLSGDNGGAVVQVIKSGAIIAN 262 >gi|85713504|ref|ZP_01044494.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] gi|85699408|gb|EAQ37275.1| Flp pilus assembly CpaB [Nitrobacter sp. Nb-311A] Length = 260 Score = 230 bits (588), Expect = 1e-58, Method: Composition-based stats. Identities = 89/262 (33%), Positives = 139/262 (53%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ V A+ AG +A L S + ++ ++VL++K D+ +G Sbjct: 1 MNTARI----VVLTIAVGAGGLAAYLASGSD-KKPQIAQTVQLPTVDVLVAKSDIQLGQT 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 VT N + W +P ++ + FI +P+A +L G + R P + G+PIR KLV +G+G Sbjct: 56 VTANDVAWQTWPADSASNSFIRRDRRPDATTQLAGSIARSPFIAGEPIREPKLVSAKGSG 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------LSERKPTVTVVLSN 173 ++++LP G RA + +IS + GG I PND VDV++ R S +LSN Sbjct: 116 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSRRDRNADHPSGDSVNSETILSN 175 Query: 174 IRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D I+ ++V+VG TATLEL P QA+ L ++ + LSL LRS+AD N S Sbjct: 176 VRVLAVDQTIEEKNGQKVVVGRTATLELKPEQAETLARSRQMGTLSLALRSLADANAPES 235 Query: 232 EDSDVWDVQEEGKEIQIIKAGV 253 D I +++ GV Sbjct: 236 NIDD-----RRRDSISVVRYGV 252 >gi|222147183|ref|YP_002548140.1| component of type IV pilus [Agrobacterium vitis S4] gi|221734173|gb|ACM35136.1| component of type IV pilus [Agrobacterium vitis S4] Length = 269 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 110/267 (41%), Positives = 163/267 (61%), Gaps = 10/267 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAV 57 MK R++ + V+ A +AG++AM L V Q+E V+T+ P VLI+ L V Sbjct: 1 MKPARILILFVAVAAAGLAGLLAMGLSGQKRVVVQQSEPVVTKEP--TTKVLIAAASLPV 58 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G +T + W+ +P+ ++ DGF+ + ++P A+ +L G++VR+PI +G+PIR+EK+ D Sbjct: 59 GARLTDKAMRWMDWPKTDLVDGFVTEENRPQALSDLAGLVVRLPIFEGEPIRIEKIADAS 118 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + LS+LLP GKRA + +IS+++ GG I PND VDV+MVR VLSN+RV+ Sbjct: 119 SRTLSALLPAGKRAISTEISVATGAGGFILPNDRVDVIMVRKGDNDNHLTETVLSNVRVL 178 Query: 178 AIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS-SE 232 AID I+ R ++G+TATLELTP Q K L AQ +A +LSL LRS+AD S Sbjct: 179 AIDQQIEEKNDGTRSVIGTTATLELTPEQTKVLTVAQQMAERLSLALRSVADAQEQDNSS 238 Query: 233 DSDVWDVQEEGKEIQIIKAGVIVNKDG 259 S + G ++Q+IK+G IV G Sbjct: 239 ASYLLSGDSGGPQVQVIKSGQIVKSAG 265 >gi|90425196|ref|YP_533566.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] gi|90107210|gb|ABD89247.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB18] Length = 265 Score = 229 bits (585), Expect = 3e-58, Method: Composition-based stats. Identities = 88/266 (33%), Positives = 138/266 (51%), Gaps = 16/266 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ V A+ AG +A L S Q ++VL++K D+ +G Sbjct: 1 MNTARI----VVLTIAVGAGGVAAYLASGADQQPPPAAPVAQLPTVDVLVAKSDIPLGQA 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 +TP ++W +P + FI +P+A ++ G + R + G+PIR KLV G+G Sbjct: 57 LTPGDVQWQVWPAATASEMFIRRNVRPDATTQIVGSIARSAFIAGEPIRDLKLVKANGSG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------SERKPTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + S ++LS Sbjct: 117 FMAAILPSGMRAVSTEISPETGAGGFILPNDRVDVILSKREKNPDARASGDGVNSEIILS 176 Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 NIRV+AID I+ ++V+VG TATLEL P Q++ L A+ LSL LRS+AD N + Sbjct: 177 NIRVLAIDQTIEEKNGQKVVVGKTATLELKPEQSEGLARARQSGTLSLALRSLADANSAV 236 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256 ++ D D + I +++ GV Sbjct: 237 ADTPD--DRSAKRDSINVVRFGVSTP 260 >gi|299132282|ref|ZP_07025477.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] gi|298592419|gb|EFI52619.1| Flp pilus assembly protein CpaB [Afipia sp. 1NLS2] Length = 273 Score = 229 bits (584), Expect = 3e-58, Method: Composition-based stats. Identities = 85/262 (32%), Positives = 143/262 (54%), Gaps = 19/262 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58 M R++ + + A+ AG +A L S + + + +VL++K D+ +G Sbjct: 1 MNTARVVVLAI----AVSAGGVAAFLASGSDQKPAPRVAAPVPQLETTDVLVAKSDIPLG 56 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRG 117 +T + ++W ++P F+ + +A++++ G +VR P L G+PIR KLV G Sbjct: 57 QTITADDMKWQSWPAATASSSFVKKSERADAIKDMTGSIVRSPFLAGEPIRETKLVKANG 116 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLS 172 +G ++++LP G RA + +IS + GG I PNDHVDV++ R R+ ++LS Sbjct: 117 SGFMAAILPSGMRAISTEISPETGAGGFILPNDHVDVLLSRRQKSREGNGESVSSEIILS 176 Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++RV+AID ++ ++V+VG TATLEL P QA+ L ++ LSL LRS+ D N Sbjct: 177 DVRVLAIDQTVEEKNGQKVVVGKTATLELKPAQAETLARSRQSGTLSLALRSLVDAN--- 233 Query: 231 SEDSDVWDVQEEGKEIQIIKAG 252 + V D +E K I + + G Sbjct: 234 -KPGKVEDASDE-KLITVYRGG 253 >gi|115526291|ref|YP_783202.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisA53] gi|115520238|gb|ABJ08222.1| putative pilus assembly protein cpaB [Rhodopseudomonas palustris BisA53] Length = 268 Score = 228 bits (582), Expect = 5e-58, Method: Composition-based stats. Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 10/255 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ A +A SP + K ++VL++K +LA+G + Sbjct: 1 MNKARIVVLAIAVSAGGAAAYLASGADSPKPPPQVAQVPTAQLKTVDVLVAKTNLALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 V P+ ++W +P ++ FI PN + G + R P + G+PIR KLV G+G Sbjct: 61 VGPSDVQWQNWPADSANSNFIRRDQHPNFDTTVAGSIARSPFVAGEPIREVKLVRPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------SERKPTVTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + S+ T +L+ Sbjct: 121 FMAAILPSGMRAISTEISPETGAGGFILPNDRVDVILSKRERNSDSESSKENVTSVTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V VG TATLEL P QA+ L A+ LSL LRS+ D N + Sbjct: 181 NVRVLAIDQLPKEREGQNVAVGKTATLELLPEQAEQLARARQSGTLSLALRSMVDSNVVA 240 Query: 231 SEDSDVWDVQEEGKE 245 + D +G E Sbjct: 241 TVTDDKQVTIYKGSE 255 >gi|27375778|ref|NP_767307.1| CtpC protein [Bradyrhizobium japonicum USDA 110] gi|27348916|dbj|BAC45932.1| CtpC protein [Bradyrhizobium japonicum USDA 110] Length = 270 Score = 225 bits (574), Expect = 5e-57, Method: Composition-based stats. Identities = 90/271 (33%), Positives = 137/271 (50%), Gaps = 20/271 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59 M R+ V V AL AG +A L S + + + + VL++K D+ +G Sbjct: 1 MNTARI----VVLVIALGAGGVAAYLASGYDNKPAPALPVAEKLPTVEVLVAKNDIQLGQ 56 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGN 118 V P L+W ++P FI +P A ++ G + RVP+++G+PIR +KLV G+ Sbjct: 57 AVKPEDLQWQSWPAATASGAFIRRDSRPEAQTQIAGSIARVPLMQGEPIREQKLVRAEGS 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VT 168 G ++++LP G RA + D++ ++ GG I PND VD+V+ R L Sbjct: 117 GFMAAILPSGMRAVSTDVTAETSAGGFILPNDRVDIVLTRRLKNPDVNGPTAGNDLILSE 176 Query: 169 VVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 V+L+NIRV+AID + +VG T TLEL P Q L AA+ L L LRSI D Sbjct: 177 VILTNIRVLAIDQAPKEKDGQNAVVGKTVTLELKPDQVATLTAARQGGTLQLALRSIVDA 236 Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 N + D+ + G + +I+ GV V + Sbjct: 237 NATELTAEDLAIKRSGG--VNVIRYGVQVRQ 265 >gi|148256956|ref|YP_001241541.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146409129|gb|ABQ37635.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. BTAi1] Length = 266 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 88/257 (34%), Positives = 133/257 (51%), Gaps = 13/257 (5%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEW 68 +V AL AG +A LVS Q + + VL++K D+ +G + P L W Sbjct: 6 IVVLTIALGAGGVAAYLVSTSESQQPVAVAPVAQLPTVEVLVAKNDIGLGQAIKPGDLVW 65 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127 +P E + FI +P A +L G + R P + G+PIR +KLV G+G ++++LP Sbjct: 66 QTWP-EAASNIFIRRGDRPEAANQLVGTIARAPFVIGEPIREQKLVKSDGSGFMAAILPA 124 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAID 180 G RA + +IS + GG I PND VDV++ + + ++LSN+RV+AID Sbjct: 125 GMRAISTEISPETGAGGFILPNDRVDVILSKRDKNPDKPGGPDYVSSEIILSNVRVLAID 184 Query: 181 HNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 E +VG T TLEL P QA+ L A+ L+L LRSIAD+N + ++ Sbjct: 185 QAPKEKEGQNTVVGKTVTLELKPEQAETLARARQSGSLALALRSIADVNAADGNKNET-Q 243 Query: 239 VQEEGKEIQIIKAGVIV 255 + G I+II+ G+ Sbjct: 244 MARRGNAIEIIRYGITS 260 >gi|328545280|ref|YP_004305389.1| Flp pilus assembly CpaB [polymorphum gilvum SL003B-26A1] gi|326415022|gb|ADZ72085.1| Flp pilus assembly CpaB [Polymorphum gilvum SL003B-26A1] Length = 258 Score = 224 bits (570), Expect = 1e-56, Method: Composition-based stats. Identities = 85/263 (32%), Positives = 135/263 (51%), Gaps = 12/263 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RLM + V+ L+A + M +P QT E + E + + VL++ D+ +G Sbjct: 1 MKYARLMILGVAMGAGLLAARMVMTTKAPEVPQTVERV-EPEKQTVAVLVATRDIRLGDH 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W +PE V G I +QP+A + + G + + PI G+PIR ++L+ G Sbjct: 60 LAASDISWAEWPENVVPQGAITRQNQPDAEELMVGQIAKAPIYSGEPIRGQRLIRTDRGF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIA 178 ++++LPKGKRA + + + GG I P D VDV++ RS + +L N+RV+A Sbjct: 120 MAAILPKGKRAIAVGVEAETTAGGFILPGDKVDVILTRSSDSNRSNARSETILENVRVLA 179 Query: 179 IDHNI--DSDERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ID + DE+ L TATLEL+ QA+ + AQ + +SL LRS D S D Sbjct: 180 IDTTTAGEQDEKSLSPDRTATLELSLEQAEVVAQAQQIGTISLALRSAQD-----SGDEM 234 Query: 236 VWDVQEEGKEIQIIKAGVIVNKD 258 + +G + +K GV Sbjct: 235 DGPISRKG-GVSFVKYGVSSQGS 256 >gi|170740622|ref|YP_001769277.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] gi|168194896|gb|ACA16843.1| Flp pilus assembly protein CpaB [Methylobacterium sp. 4-46] Length = 268 Score = 223 bits (569), Expect = 2e-56, Method: Composition-based stats. Identities = 93/268 (34%), Positives = 135/268 (50%), Gaps = 16/268 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ +R + I V+ V L A + P V ++VL++ DL +G Sbjct: 1 MRSSRALLIGVAAVTGLAAFYMMSGSPPPPPPPPVVVQAPAVPDTVDVLVAAADLPMGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 + P L W A+P+ +V DGFI P A+++ G VR P L G+PIR EKL+ G+G Sbjct: 61 LKPADLRWQAWPKGSVNDGFIQRGQNPRALEDTVGSFVRGPFLGGEPIRREKLIRANGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170 LS++LP G RA + I S+ GG I PND VDV+ E + Sbjct: 121 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTYRDDEASRATTSDVQVSETI 180 Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 L N+RV+A+ + ERV+ G TATLELTP Q + + AQ V +LSL LRSIAD Sbjct: 181 LQNVRVLAVGQTVQERNGERVVTGDTATLELTPAQTEQITLAQKVGQLSLALRSIADAGI 240 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 S E+ + ++ + +++ GV Sbjct: 241 SQPENPE----PQKESALTVVRYGVSRQ 264 >gi|209551758|ref|YP_002283675.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537514|gb|ACI57449.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 271 Score = 222 bits (567), Expect = 3e-56, Method: Composition-based stats. Identities = 109/264 (41%), Positives = 158/264 (59%), Gaps = 6/264 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG +AM++ V T+ +N+L+S +LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGFLAMQMAGNGGVVTQVQSVIEKEPTVNILVSSANLAVGER 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+ +P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDKSVHWMPWPQGGVVPGLITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSNSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I + + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKD 258 + G IQ+IK+G IV Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDA 264 >gi|86748908|ref|YP_485404.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] gi|86571936|gb|ABD06493.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris HaA2] Length = 265 Score = 222 bits (566), Expect = 4e-56, Method: Composition-based stats. Identities = 83/266 (31%), Positives = 137/266 (51%), Gaps = 16/266 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ +V++ VA +A + + + + VL++K D+ +G Sbjct: 1 MNTARIVVLVIAVGAGAVAAYLASGIGGQETAGPTAPVAQ--LATVEVLVAKSDIPLGQP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119 V P+ ++W +P FI +P+A +L G + R P + G+PIR +KLV G+G Sbjct: 59 VGPSDVQWQTWPAATASSNFILRSERPDASVQLAGSIARSPFIAGEPIREQKLVKSNGSG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------VTVVLS 172 ++++LP G RA + +IS + GG I PND VDV++ + ++LS Sbjct: 119 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVILSKRDQNPDRVKGGDVVNSEIILS 178 Query: 173 NIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 NIR++AID ++ ++V+VG TATLEL P QA+ L A+ LSL LRS+AD N Sbjct: 179 NIRILAIDQTVEEKNGQKVVVGKTATLELKPDQAEFLARARQSGTLSLALRSLADAN--- 235 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVN 256 + ++ + I +I+ GV Sbjct: 236 -APARTEEIGGKRDSINVIRFGVSTQ 260 >gi|146342077|ref|YP_001207125.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146194883|emb|CAL78908.1| Putative pilus assembly protein cpaB [Bradyrhizobium sp. ORS278] Length = 269 Score = 222 bits (565), Expect = 5e-56, Method: Composition-based stats. Identities = 90/259 (34%), Positives = 133/259 (51%), Gaps = 14/259 (5%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEW 68 +V AL AG +A LVS Q + + VL++K D+ +G + P L W Sbjct: 6 IVVLTIALGAGGVAAYLVSSSESQQPAPVAPVAQLPTVEVLVAKADIGLGQAIKPGDLIW 65 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPK 127 +PE + FI +P A +L G + R P + G+PIR +KLV G+G ++++LP Sbjct: 66 QTWPE-AASNIFIRRGDRPEAATQLVGSIARAPFVIGEPIREQKLVKSDGSGFMAAILPA 124 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAID 180 G RA + +IS + GG I PND VDV++ R ++LSN+RV+AID Sbjct: 125 GMRAISTEISPETGAGGFILPNDRVDVILSRREKNPDKPAAADSIVSEIILSNVRVLAID 184 Query: 181 HNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS--EDSDV 236 E +VG T TLEL P QA+ L A+ L+L LRSIAD+N + +++ Sbjct: 185 QAPKEKEGQNTVVGKTVTLELKPEQAETLSRARQAGTLALALRSIADINAPDTGKTETEQ 244 Query: 237 WDVQEEGKEIQIIKAGVIV 255 + G I+II+ GV Sbjct: 245 QQMARRGNAIEIIRYGVTS 263 >gi|110636320|ref|YP_676528.1| pilus assembly protein cpaB [Mesorhizobium sp. BNC1] gi|110287304|gb|ABG65363.1| pilus assembly protein cpaB [Chelativorans sp. BNC1] Length = 270 Score = 221 bits (564), Expect = 7e-56, Method: Composition-based stats. Identities = 96/265 (36%), Positives = 145/265 (54%), Gaps = 11/265 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59 M +R++ + V+ A+ AG +A L SP V E P +VL+ D+ VG Sbjct: 1 MNKSRIVILGVAVAAAIGAGYLAKNLASPQKVAAVAPTPEKPPVSLTDVLVLTQDVPVGE 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + W A+P E+V D FI +P+A++ + + R+P+ G+P+R KLV G+ Sbjct: 61 PINGAAM-WQAWPAESVMDAFITREREPDALETIRNAVARLPLFAGEPVRRSKLVGEGDS 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175 L+++LP GKRA I+ ++ GG I PND VDV+M R E VL NIR Sbjct: 120 FLAAILPPGKRAVATRIAADTSAGGFILPNDRVDVIMTRRADEGSSPNGFITETVLENIR 179 Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 V+AID I DE RV +G TATLELTP +A+ + AQ +A +L+L LRS+AD N ++ Sbjct: 180 VLAIDQTIHEDEEGRRVKLGETATLELTPEEAEVITVAQQLADRLTLSLRSVADSNEEAT 239 Query: 232 EDSD-VWDVQEEGKEIQIIKAGVIV 255 + + G +++IK+G Sbjct: 240 DRGLHLVTGTGRGDSVRLIKSGETS 264 >gi|304392385|ref|ZP_07374326.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] gi|303295489|gb|EFL89848.1| Flp pilus assembly protein CpaB [Ahrensia sp. R2A130] Length = 286 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 88/264 (33%), Positives = 136/264 (51%), Gaps = 12/264 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH---VQTEEVITENPAKFINVLISKGDLAV 57 MK +L+ I V+ V +L AG + M + P VQT+ VL++ D+ Sbjct: 14 MKPVQLVLIAVALVASLGAGYLVMNMSEPPAQVVVQTDNGPAIPTIPTRLVLVAVADVPQ 73 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G ++ N + + +PE V F+ P A+++ G + R G+PIR K+V Sbjct: 74 GTTLSENNMRFEEWPETGVRPSFVTQKDAPEAIKDFSGAIARSSFFAGEPIRDAKIVRSD 133 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175 +G LS++LP GKRA ++I+ SS+ GG I PNDHVDV+M R + +L NIR Sbjct: 134 SGYLSAILPAGKRAVAIEITASSSAGGFILPNDHVDVIMARQQDGEQNVIITDTILQNIR 193 Query: 176 VIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAK--LSLVLRSIADLNPSSS 231 V+A+D I+ +E + VG T TLELT Q + + AAQ + + L+L LRS+ D + Sbjct: 194 VLALDQLIEEEEGKKSTVGETVTLELTAEQVEIVAAAQQINRRGLTLALRSVEDAEIEGT 253 Query: 232 EDSDVWDVQEEGKE---IQIIKAG 252 + K ++II+ G Sbjct: 254 SAGRKLLSSGDRKSRGTVRIIRYG 277 >gi|91977984|ref|YP_570643.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] gi|91684440|gb|ABE40742.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris BisB5] Length = 266 Score = 220 bits (562), Expect = 1e-55, Method: Composition-based stats. Identities = 79/267 (29%), Positives = 131/267 (49%), Gaps = 17/267 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + ++ VA +A + + VL++K D+ +G Sbjct: 1 MNTARIVVLTIAIGAGAVAAYLASG--GGNQEAAGPAAPVAELPTVEVLVAKSDIPLGQP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 V P ++W +P FI +P A +L G + R + G+PIR +KLV G+G Sbjct: 59 VGPGDMQWQTWPAATASANFIRRNERPEATTQLAGSIARSQFIAGEPIREQKLVKANGSG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171 ++++LP G RA + +IS + GG I PND VDV++ + +L Sbjct: 119 FMAAILPTGMRAVSTEISPETGAGGFILPNDRVDVILSKRDKNPDRAGSGGDVVNSETIL 178 Query: 172 SNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 SN+RV+AID I+ ++V+VG TATLEL P QA+ L A+ LSL LRS+ D N Sbjct: 179 SNVRVLAIDQAIEEKNGQKVVVGKTATLELKPEQAEFLARARQSGTLSLALRSLVDANAP 238 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGVIVN 256 ++ + ++ + + +++ GV Sbjct: 239 TATE----EIGGKRDSVNVVRYGVSTP 261 >gi|146338124|ref|YP_001203172.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. ORS278] gi|146190930|emb|CAL74935.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. ORS278] Length = 248 Score = 220 bits (561), Expect = 2e-55, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 127/243 (52%), Gaps = 14/243 (5%) Query: 22 IAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 +A L S + +V P ++VL++K D+ +G + P +L+W ++P F Sbjct: 1 MAAYLASGSDDRQAQVAAPAPQVPTVDVLVAKADIGLGQSIKPELLQWQSWPASTASSSF 60 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISIS 139 I +P E+ G + R P + G+PIR +KLV G+G ++++LP G RA + +IS Sbjct: 61 IRRNERPEGQNEVTGTIARAPFIAGEPIREQKLVKSDGSGFMAAILPAGMRAVSTEISPE 120 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVL 190 + GG I PND VDV++ + + ++L+NIRV+AID + + Sbjct: 121 TGAGGFILPNDRVDVILSKRERNPDQPNAGDVVSSEIILANIRVLAIDQAPKEKDGQTTV 180 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG T TLEL P QA+ L A+ LSL LRSIAD+N + D + G + +++ Sbjct: 181 VGKTVTLELKPEQAETLARARQTGTLSLALRSIADVN---MAEQRSDDNRRRGDSVAVVR 237 Query: 251 AGV 253 G+ Sbjct: 238 FGI 240 >gi|220922778|ref|YP_002498080.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947385|gb|ACL57777.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 267 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 136/268 (50%), Gaps = 17/268 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + I ++ V L A M P A ++VL++ DL +G + Sbjct: 1 MKSSRALLIGIAAVTGLAA-FYMMSGSPPPPPPVVAPPPPMVADTVDVLVAAADLPMGQI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 + P L W A+P+ ++ DGF+ NA+++ G VR P L G+PIR EKL+ G+G Sbjct: 60 LKPGDLRWQAWPKTSLNDGFLQREQNANALEDTLGSFVRSPFLGGEPIRREKLIKANGSG 119 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTVV 170 LS++LP G RA + I S+ GG I PND VDV+ R+ + Sbjct: 120 FLSAILPSGMRAVAISIDARGSNTAGGFILPNDRVDVLRTHRDEEAARATKSDVQVTETI 179 Query: 171 LSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 L N+RV+A+ + ERV+ G TATLELTP QA+ + AQ V +LSL LRS++D Sbjct: 180 LKNVRVLAVGQTVQERNGERVVTGDTATLELTPAQAEQITLAQKVGQLSLALRSLSDAGQ 239 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 E + E+ + +++ GV Sbjct: 240 VQPESPE----TEKEPALTVVRYGVSQQ 263 >gi|148258234|ref|YP_001242819.1| putative pilus assembly protein CpaB [Bradyrhizobium sp. BTAi1] gi|146410407|gb|ABQ38913.1| Putative pilus assembly protein, cpaB [Bradyrhizobium sp. BTAi1] Length = 249 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 128/243 (52%), Gaps = 13/243 (5%) Query: 22 IAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 +A L S + V P + + VL++K D+ +G + P L+W ++P F Sbjct: 1 MAAYLASGSDDRPAPVAAVAPTVETVEVLVAKSDINLGQSLKPEHLQWQSWPAATTSSSF 60 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISIS 139 I + E+ G++ R P + G+PIR +KLV G+G ++++LP G RA + +IS Sbjct: 61 IQRKDRSKGDAEVTGMIARAPFIAGEPIREQKLVKADGSGFMAAILPAGMRAVSTEISPE 120 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVL 190 + GG I PND VDV++ + + + ++LSNIRV+AID + + Sbjct: 121 TGAGGFILPNDRVDVLLSKRERNPEQPNAGDVISSEIILSNIRVLAIDQAPKEKDGQTTV 180 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG T TLEL P QA+ L A+ LSL LRSIAD+N + + + + + G + +I+ Sbjct: 181 VGKTVTLELKPEQAETLARARQSGTLSLALRSIADINVAENRSDE--NSRRRGDSVAVIR 238 Query: 251 AGV 253 G+ Sbjct: 239 FGI 241 >gi|188581659|ref|YP_001925104.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] gi|179345157|gb|ACB80569.1| Flp pilus assembly protein CpaB [Methylobacterium populi BJ001] Length = 260 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 78/261 (29%), Positives = 133/261 (50%), Gaps = 7/261 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMGGEKAPEPAPVVKAEPPPPIPMSEVLVAAAELPMGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + P L W+ +PE+ + G ID P +++ G ++R +PIR E+L+ G+G Sbjct: 61 LKPEDLRWIPWPEQAIAPGLIDRRAAPKGLEDAVGAIIRTGFSANEPIRPERLIKAGSGF 120 Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +S++LP G RA + SS+ GG I PNDHVD++ + + +L+++RV+A Sbjct: 121 MSAILPPGMRAVAITTDTRGSSSAGGFILPNDHVDIIKTSNEGSDQ-FAETLLTDVRVLA 179 Query: 179 IDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + + V+ TAT+ LTP QA+ + AQ V +LSLVLRSI D ++ S+ Sbjct: 180 VGQIVQDKNGANVVTAETATVALTPAQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSEE 238 Query: 237 WDVQEEGKEIQIIKAGVIVNK 257 D+ EG + +++ GV + Sbjct: 239 ADLPPEGP-MTVVRFGVAKQQ 258 >gi|163757626|ref|ZP_02164715.1| pilus assembly protein [Hoeflea phototrophica DFL-43] gi|162285128|gb|EDQ35410.1| pilus assembly protein [Hoeflea phototrophica DFL-43] Length = 269 Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats. Identities = 108/266 (40%), Positives = 165/266 (62%), Gaps = 12/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSP----HHVQTEEVITENPAKFINVLISKGDLA 56 MK R++ + V+ + A +AG +AM L +P + + VI + P ++VL+ L Sbjct: 1 MKPARVVIMAVAVLAAGLAGYLAMNLTAPTVQVNEISATPVIEKMP--TLDVLVVSASLP 58 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 VG + +EW +PE+ V +G I +P+A+ EL G +VR+P+ G+P+R EK+VD Sbjct: 59 VGARLNEETMEWKGWPEDAVTEGLIRRESRPDAITELTGSIVRLPLFTGEPLRPEKIVDS 118 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIR 175 + +SSLLP GKRA +IS++++ GG I PND VDV+MVR +E++ V+LSNIR Sbjct: 119 SSRIMSSLLPAGKRAIATEISVATSAGGFILPNDRVDVIMVRRKTEQEGFLTEVILSNIR 178 Query: 176 VIAIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 V+AID I+ D R VG+TATLELTP Q+K + AQ +A +L+L LRS+AD+ + Sbjct: 179 VLAIDQRIEEDAQGNRTAVGTTATLELTPDQSKIITVAQQMADRLTLALRSVADVQEPDT 238 Query: 232 EDSDVWDVQEEG-KEIQIIKAGVIVN 256 + + E+G IQ+I++G I N Sbjct: 239 DGAKHLLSGEDGTSAIQLIRSGAITN 264 >gi|209886527|ref|YP_002290384.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] gi|209874723|gb|ACI94519.1| Flp pilus assembly protein CpaB [Oligotropha carboxidovorans OM5] Length = 272 Score = 217 bits (553), Expect = 1e-54, Method: Composition-based stats. Identities = 74/219 (33%), Positives = 116/219 (52%), Gaps = 10/219 (4%) Query: 26 LVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 L S + EV P + +VL++K D+ +G + + W +P FI Sbjct: 22 LASGSDQKPAEVAAPAPKLETTDVLVAKADIPLGQTIKAEDMTWQTWPAATASSSFIRKS 81 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKGKRAATMDISISSAVG 143 + +A+ +L G + R P L G+PIR KLV G+G ++++LP G RA + +IS + G Sbjct: 82 ERASAVADLTGSIARSPFLAGEPIRETKLVKSNGSGFMAAILPSGMRAVSTEISPETGAG 141 Query: 144 GMIKPNDHVDVVMVRSLSERKPT------VTVVLSNIRVIAIDHNIDSD--ERVLVGSTA 195 G I PND VDV++ R ++LS++RV+AID I+ ++V+VG TA Sbjct: 142 GFILPNDRVDVMLSRRQRNPDSNGGEMVSSEIILSDVRVLAIDQTIEEKNGQKVVVGKTA 201 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 TLEL P QA+ L ++ L+L LRS+ D N + + Sbjct: 202 TLELKPAQAEMLTRSRQSGTLTLALRSLVDANKQNEVEE 240 >gi|254473714|ref|ZP_05087109.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] gi|211957100|gb|EEA92305.1| Flp pilus assembly protein CpaB [Pseudovibrio sp. JE062] Length = 259 Score = 216 bits (551), Expect = 2e-54, Method: Composition-based stats. Identities = 82/262 (31%), Positives = 129/262 (49%), Gaps = 12/262 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +RL+ ++++ +A + + S QT V+ E + +L++ DL VG Sbjct: 1 MKASRLLVLIIALSAGGLAAWLNLSSGSREPAQTI-VVQEQEIPSLEILVAAQDLKVGTA 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T L W +PEE+V DG I P A +E G +++ + G+PIR E+L++ G Sbjct: 60 LTEGDLSWAKWPEESVSDGVILRSSSPQADEEFLGQIIKAAMFSGEPIRAERLINTDKGF 119 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178 L+++LPKGKRA + + S GG I P D VDV++ +R +L NI+V+A Sbjct: 120 LAAILPKGKRAVAVPVDAVSTAGGFILPGDKVDVLISMQAKKRDEGFISETLLENIKVLA 179 Query: 179 IDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ID S+ TATLEL P +A+ + A + LSL LRS AD + Sbjct: 180 IDTTTASENSEKAMSPDQTATLELFPHEAETIARATQMGTLSLSLRSAADSKDGVKQPPR 239 Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257 V ++ +K G+ Sbjct: 240 VKG------GVKFVKYGIASQS 255 >gi|27376551|ref|NP_768080.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27349692|dbj|BAC46705.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] Length = 269 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 82/264 (31%), Positives = 130/264 (49%), Gaps = 17/264 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ + V+ VA +A + ++VL++K D+ +G Sbjct: 4 MNRARIVVLTVAICAGGVAAYLAS---GSDNSAPPPAAPVAQLPTVDVLVAKNDIGLGQT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 V P ++W +P FI +P + ++ G + R P ++G+PIR +KLV G+G Sbjct: 61 VKPEDVQWQTWPAATASATFIRRNERPEGVTQVTGSIARAPFIQGEPIRDQKLVKAEGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--------TVTVVL 171 ++++LP G RA + +IS + GG I PND VDV++ R L P T ++L Sbjct: 121 FMAAILPTGMRAISTEISPETGAGGFILPNDRVDVLLTRRLKNPDPSNGAPDIVTSEIIL 180 Query: 172 SNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +NIRV+AID + +VG T TLEL P Q L AA+ LSL LRSI D+ Sbjct: 181 ANIRVLAIDQAPKEKDGQNTVVGKTVTLELNPTQTATLSAARQSGTLSLALRSIVDV--- 237 Query: 230 SSEDSDVWDVQEEGKEIQIIKAGV 253 + + D + + II+ G+ Sbjct: 238 KMSEITLDDSAQRRDGVSIIRYGI 261 >gi|300704929|ref|YP_003746532.1| pilus assembly (cpab), transmembrane protein [Ralstonia solanacearum CFBP2957] gi|299072593|emb|CBJ43943.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CFBP2957] Length = 284 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 30/248 (12%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R +S ++ + V+++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAVVFASRWLSQ----------QSNSGITKVVVAAADIDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++P+ ++ V +P ++ G I D H LDG +VR +++G+P+ KL +G Sbjct: 51 RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTV 167 GGLS+++ GKRA T+ ++ V G P +VD+++ + Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224 Query: 227 NPSSSEDS 234 +P+ + + Sbjct: 225 HPADTAGA 232 >gi|83749639|ref|ZP_00946622.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|207728107|ref|YP_002256501.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|207744157|ref|YP_002260549.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] gi|83723700|gb|EAP70895.1| TRANSMEMBRANE PILUS ASSEMBLY PROTEIN; cpaB1 [Ralstonia solanacearum UW551] gi|206591352|emb|CAQ56964.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|206595561|emb|CAQ62488.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] Length = 284 Score = 216 bits (550), Expect = 3e-54, Method: Composition-based stats. Identities = 68/248 (27%), Positives = 127/248 (51%), Gaps = 30/248 (12%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R++ ++++ + L A + A R +S ++ + V+++ D+ +G Sbjct: 1 MKNLRILSMLLIATIAGLAAVVFASRWLSQ----------QSSSGITKVVVAAADIDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++P+ ++ V +P ++ G I D H LDG +VR +++G+P+ KL +G Sbjct: 51 RLSPDFIKTVDWPSASLPPGAISDTH------ALDGRVVRTSLIRGEPVLESKLTPQGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------VRSLSERKPTV 167 GGLS+++ GKRA T+ ++ V G P +VD+++ + Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTIQDSKDAKATGGDRADQSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ ++ D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQVDP 224 Query: 227 NPSSSEDS 234 +P+ + + Sbjct: 225 HPADTAGA 232 >gi|86355863|ref|YP_467755.1| pilus assembly protein [Rhizobium etli CFN 42] gi|86279965|gb|ABC89028.1| pilus assembly protein [Rhizobium etli CFN 42] Length = 271 Score = 214 bits (546), Expect = 9e-54, Method: Composition-based stats. Identities = 113/265 (42%), Positives = 163/265 (61%), Gaps = 6/265 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +N+L+S +L VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIKKEPTVNILVSNKNLPVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + W+A+P+E V GFI + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LGDDSVHWMAWPKEGVVQGFITEADRPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I + + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKTVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAG 265 >gi|118589702|ref|ZP_01547107.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] gi|118437788|gb|EAV44424.1| Flp pilus assembly CpaB [Stappia aggregata IAM 12614] Length = 256 Score = 213 bits (543), Expect = 2e-53, Method: Composition-based stats. Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 14/265 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58 MK+ R+ V++ A M ++S + +++ A+ VL+++ D+ +G Sbjct: 1 MKIARI--FVLAIAVAAGIIAFRMVMMSGNKPAEPQIVQAPVAEQTKTQVLVAQRDIPLG 58 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++P+ + W +PE+ V G + P A +E G + R PI G+P+R E+L++ Sbjct: 59 AKLSPDDMSWANWPEDAVPFGAVTKEAAPLANEEYAGRIARAPIFAGEPVRPERLINTDK 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G ++++LPKGKRA + + ++ GG I P D VDV++ R S+ +L NIRV+A Sbjct: 119 GFMAAILPKGKRAIAVSVEEETSAGGFILPGDKVDVILTRK-SDTSAVSETILENIRVLA 177 Query: 179 IDHNIDSDERVL---VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 ID ++ TATLEL+ Q++ + +Q + ++L LRS D D Sbjct: 178 IDSTTAGEQEQKNLSPKRTATLELSLPQSEIIAQSQQIGTIALALRSAQDSAD------D 231 Query: 236 VWDVQEEGKEIQIIKAGVIVNKDGE 260 D + + +K GV + Sbjct: 232 AEDDGGRRRGVSYVKYGVTSQAGAQ 256 >gi|299067806|emb|CBJ39017.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum CMR15] Length = 295 Score = 213 bits (542), Expect = 3e-53, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 31/250 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ +++ A +AG+ AM S +Q + + V ++ D+ +G Sbjct: 8 MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P + V +P ++ G I D H +DG + R + G+P+ KL G G Sbjct: 59 LSPEFIRLVDWPAASLPPGAISDEH------AIDGRVTRTSLSPGEPVLESKLTPVGTKG 112 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERKP 165 GLS+++ GKRA T+ ++ V G P +VD+++ E Sbjct: 113 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQEAPDGKPAKGAQADREEHS 172 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 173 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 232 Query: 225 DLNPSSSEDS 234 D P + + Sbjct: 233 DPRPVDTAGA 242 >gi|163851902|ref|YP_001639945.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254561620|ref|YP_003068715.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] gi|163663507|gb|ABY30874.1| Flp pilus assembly protein CpaB [Methylobacterium extorquens PA1] gi|254268898|emb|CAX24859.1| pilus assembly protein cpaB [Methylobacterium extorquens DM4] Length = 261 Score = 212 bits (541), Expect = 3e-53, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 8/262 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVAPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D ++ S+ Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSE 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257 D+ EG + +++ GV + Sbjct: 239 EADMPPEGP-MTVVRFGVAKQQ 259 >gi|240139025|ref|YP_002963500.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] gi|240008997|gb|ACS40223.1| pilus assembly protein cpaB [Methylobacterium extorquens AM1] Length = 261 Score = 212 bits (539), Expect = 5e-53, Method: Composition-based stats. Identities = 81/262 (30%), Positives = 134/262 (51%), Gaps = 8/262 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEPAPVAKAEPVVPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWIAWPEQAISPGLIERRAAPKGLEDSVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D ++ S+ Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALSE 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257 D+ EG + +++ GV + Sbjct: 239 EADMPPEGP-MTVVRFGVAKQQ 259 >gi|190889880|ref|YP_001976422.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|218509313|ref|ZP_03507191.1| pilus assembly protein [Rhizobium etli Brasil 5] gi|190695159|gb|ACE89244.1| pilus assembly protein [Rhizobium etli CIAT 652] gi|327194695|gb|EGE61541.1| pilus assembly protein [Rhizobium etli CNPAF512] Length = 271 Score = 211 bits (537), Expect = 9e-53, Method: Composition-based stats. Identities = 114/265 (43%), Positives = 163/265 (61%), Gaps = 6/265 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I + + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGSIVTDAG 265 >gi|307943144|ref|ZP_07658489.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] gi|307773940|gb|EFO33156.1| Flp pilus assembly protein CpaB [Roseibium sp. TrichSKD4] Length = 256 Score = 210 bits (536), Expect = 1e-52, Method: Composition-based stats. Identities = 80/266 (30%), Positives = 129/266 (48%), Gaps = 16/266 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV--ITENPAKFINVLISKGDLAVG 58 MK RL + V A+ AG++A RLVS + E V +T + VL++ D+ +G Sbjct: 1 MKYARLAILGV----AVGAGLLAARLVSTSAPEPEPVAEVTAPTIEKTEVLVASSDITLG 56 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + W ++P E + G + P AM+ L G + R PI G+PIR E+L+ Sbjct: 57 SKLGGSDFTWASWPTEALPAGVLTKDDDPEAMERLVGQVTRTPIFSGEPIREERLIRTDK 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVI 177 G ++++LPKG RA + + + GG I P D VDV++ ++ E +L N+RV+ Sbjct: 117 GFMAAILPKGMRAIAVSVEAETTAGGFILPGDKVDVILTKASGETGSAVSNTILENVRVL 176 Query: 178 AIDHNIDSDERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 AID D+ TATLEL Q++ + AQ V +SL LRS D ++ + Sbjct: 177 AIDAVTAGDQDEKNVSPDRTATLELNLPQSEIISQAQQVGTISLALRSAQDSADNAEQTV 236 Query: 235 DVWDVQEEGKEIQIIKAGVIVNKDGE 260 + + +K G+ + Sbjct: 237 ------RRKRAVNFVKYGLTSQAASQ 256 >gi|17545375|ref|NP_518777.1| pilus assembly transmembrane protein [Ralstonia solanacearum GMI1000] gi|17427667|emb|CAD14186.1| probable pilus assembly cpab transmembrane protein [Ralstonia solanacearum GMI1000] Length = 288 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 69/250 (27%), Positives = 118/250 (47%), Gaps = 31/250 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ +++ A +AG+ AM S +Q + + V ++ D+ +G Sbjct: 1 MKNLRILSMLL---IATIAGLAAMLFASRWLIQ------QGNSGTTKVAVAAVDVNLGQR 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P + V +P ++ G I D H +DG + R + G+P+ KL G G Sbjct: 52 LSPEFIRLVDWPAASLPPGAISDEH------AIDGRVTRTSLSPGEPVLESKLTPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS--------------ERKP 165 GLS+++ GKRA T+ ++ V G P +VD+++ E Sbjct: 106 GLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDIIVNTQQETPDGKPAKGAQADREEHS 165 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ ++ DE + V + TLE+TP +A+ L A+SV LSLVLR+ Sbjct: 166 ISKIVLEKILVLAVAQEVNRDETKPKVVNAVTLEVTPDEAEKLDLARSVGTLSLVLRNQV 225 Query: 225 DLNPSSSEDS 234 D P + + Sbjct: 226 DPRPVDTAGA 235 >gi|218530653|ref|YP_002421469.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] gi|218522956|gb|ACK83541.1| Flp pilus assembly protein CpaB [Methylobacterium chloromethanicum CM4] Length = 261 Score = 210 bits (534), Expect = 2e-52, Method: Composition-based stats. Identities = 80/262 (30%), Positives = 133/262 (50%), Gaps = 8/262 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK RL + ++ V A ++ +P V + P VL++ +L +G Sbjct: 1 MKPARLAVLGIALVAGCGAALLMQGEEKAPEAVPVAKAEPVAPVPMSEVLVAAAELPMGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L W+A+PE+ + G I+ P +++ G ++R +PIR E+LV G+G Sbjct: 61 TLKPEDLRWLAWPEQAISPGLIERRAAPKGLEDAVGAIIRTGFSANEPIRPERLVKAGSG 120 Query: 120 GLSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +S++LP G RA + SS+ GG + PNDHVDV+ S + +L+++RV+ Sbjct: 121 FMSAILPPGMRAVAITTDTRGSSSAGGFVLPNDHVDVIKT-SNEGTEQFAETLLTDVRVL 179 Query: 178 AIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+ + V+ TATL LTP QA+ + AQ V +LSLVLRSI D ++ + Sbjct: 180 AVGQIVQEKNGANVVTAETATLALTPSQAETVTLAQKVGQLSLVLRSIQDSA-RTAALFE 238 Query: 236 VWDVQEEGKEIQIIKAGVIVNK 257 + EG + +++ GV + Sbjct: 239 EAGMPPEGP-MTVVRFGVAKQQ 259 >gi|13474659|ref|NP_106228.1| pilus assembly protein cpaB [Mesorhizobium loti MAFF303099] gi|14025414|dbj|BAB52014.1| pilus assembly protein; CpaB [Mesorhizobium loti MAFF303099] Length = 271 Score = 209 bits (533), Expect = 2e-52, Method: Composition-based stats. Identities = 92/266 (34%), Positives = 142/266 (53%), Gaps = 12/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M +RL+ + V+ A AG +A +V+ Q + +VL+ GD+A+G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAAPPPQIVVDSGPQAPAVPLQDVLVLSGDVAMG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + N + W ++P + V FI + P+A+++L G + RVP+ G+P+R KL+ G Sbjct: 61 NALQ-NNISWQSWPADGVNANFITKANAPDALEKLKGSIARVPMYAGEPVRRSKLIGEGQ 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174 +SS+LP G RA IS ++ GG I PND VDV+M R +L NI Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR++AD + Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKN 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255 ++D K +++IK+G + Sbjct: 240 VGEADYLVSGNGRKGTVRLIKSGEVS 265 >gi|260461950|ref|ZP_05810195.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259032197|gb|EEW33463.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 271 Score = 209 bits (533), Expect = 3e-52, Method: Composition-based stats. Identities = 91/266 (34%), Positives = 140/266 (52%), Gaps = 12/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M +RL+ + V+ A AG +A +V+P Q + +VL+ GD+A+G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAPPPAQIVVDSGPKAPAVALQDVLVLSGDVAMG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + N + W +P + + FI P+A+++L G + RV + G+P+R KL+ G Sbjct: 61 NQL-ENNIAWQPWPADGINPNFITKATAPDALEKLKGSIARVGMYAGEPVRRSKLIGEGQ 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174 +SS+LP G RA IS ++ GG I PND VDV+M R +L NI Sbjct: 120 SFMSSILPSGMRAVATTISADTSAGGFILPNDFVDVIMTRRADANSGSTGFNTETILKNI 179 Query: 175 RVIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSS 230 RV+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR+I D + Sbjct: 180 RVLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAITDTQEKN 239 Query: 231 SEDSDVWDVQEEGK-EIQIIKAGVIV 255 +++D K +++IK+G + Sbjct: 240 VDEADYLVSGNGRKGTVRLIKSGEVS 265 >gi|39937141|ref|NP_949417.1| Flp pilus assembly CpaB [Rhodopseudomonas palustris CGA009] gi|39650999|emb|CAE29522.1| possible pilus assembly protein cpaB [Rhodopseudomonas palustris CGA009] Length = 270 Score = 208 bits (530), Expect = 6e-52, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 16/261 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L++ +V+ A A + S + + ++VL++K ++A+G + Sbjct: 1 MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 VTP+ + W ++P ++ + F+ PN L G + R P + G+PIR KLV G+G Sbjct: 61 VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172 ++++LP G RA + +IS ++ GG I PND VDV++ + T T +L+ Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V+VG TATLELT QA+ L A+ LSL LRSIAD Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARIV- 239 Query: 231 SEDSDVWDVQEEGKEIQIIKA 251 +E SD D K+I + + Sbjct: 240 AEASDQGD-----KQITVYRG 255 >gi|192292976|ref|YP_001993581.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|192286725|gb|ACF03106.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 270 Score = 208 bits (529), Expect = 8e-52, Method: Composition-based stats. Identities = 86/261 (32%), Positives = 137/261 (52%), Gaps = 16/261 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L++ +V+ A A + S + + ++VL++K ++A+G + Sbjct: 1 MRLSKPRIVVLGIALAAGAAAAFLASSSDSERPRQVAEPAPQLQTVDVLVAKSNIALGQL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 VTP+ + W ++P ++ + F+ PN L G + R P + G+PIR KLV G+G Sbjct: 61 VTPSDVRWQSWPADSASEHFLRRDKMPNTEAFLAGTIARSPFVAGEPIREVKLVKPNGSG 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLS 172 ++++LP G RA + +IS ++ GG I PND VDV++ + T T +L+ Sbjct: 121 FMAAILPTGMRAVSTEISPETSAGGFILPNDKVDVILTKRDKSSDIPGAKDTVTSTTILT 180 Query: 173 NIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+RV+AID + V+VG TATLELT QA+ L A+ LSL LRSIAD Sbjct: 181 NVRVLAIDQLPKEREGQNVVVGKTATLELTGDQAEVLTRARQSGTLSLALRSIADARVV- 239 Query: 231 SEDSDVWDVQEEGKEIQIIKA 251 +E SD D K+I + + Sbjct: 240 AEASDQGD-----KQITVYRG 255 >gi|319785609|ref|YP_004145085.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317171497|gb|ADV15035.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 270 Score = 207 bits (528), Expect = 9e-52, Method: Composition-based stats. Identities = 93/266 (34%), Positives = 144/266 (54%), Gaps = 13/266 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGM 59 M +RL+ + V+ A AG +A +V+P + + PA +VL+ GD+ +G Sbjct: 1 MPASRLIILSVAVAAAGGAGYVAKNMVAPPPQVVVDSAPQAPAVALQDVLVLSGDVPMGS 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + N + W ++P + V FI +P A+ +L G + RV + G+P+R KL+ G Sbjct: 61 PIQ-NNIAWQSWPADGVNANFITRTAEPEALDKLKGSIARVAMYAGEPLRRSKLIGEGQS 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175 +SS+LP G RA IS ++ GG I PND VDV+M R +L NIR Sbjct: 120 FMSSILPSGMRAVATAISADTSAGGFILPNDFVDVIMTRRADAASGAAGFNTETILKNIR 179 Query: 176 VIAIDHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 V+AID I DE + VG TATLELTP QA+ + AQ +A +L+L LR++AD + Sbjct: 180 VLAIDQTIQEDEEGKKTRVGQTATLELTPKQAEIITVAQQMADRLTLALRAVADTQEKNV 239 Query: 232 EDSDVWDVQEEGKE--IQIIKAGVIV 255 ++D + V G+ +++IK+G + Sbjct: 240 GEAD-YLVSGNGRRGTVRLIKSGEVS 264 >gi|254255253|ref|ZP_04948569.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] gi|124900990|gb|EAY71740.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] Length = 323 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 71/240 (29%), Positives = 123/240 (51%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + + V A+VAG+ A+ S VQT +V ++ DL +G Sbjct: 43 MKNSRAVMM---LVVAMVAGLAAVVFASHWLVQTSTSA------VTSVAVAATDLNLGEP 93 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + N + V++P +V G D + L+G +VR + +G+P+ KL G G Sbjct: 94 LGANQIHMVSWPSGSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPIGTKG 147 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 GLS+++ +G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 148 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHIL 207 Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ + Sbjct: 208 VLAVAQQVSRDDTAPKVVNAVTLEVTPEQAERLDLARSVGTLSLVLRNQIDKQTLNTDGA 267 >gi|254502627|ref|ZP_05114778.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] gi|222438698|gb|EEE45377.1| Flp pilus assembly protein CpaB [Labrenzia alexandrii DFL-11] Length = 256 Score = 207 bits (527), Expect = 1e-51, Method: Composition-based stats. Identities = 77/259 (29%), Positives = 128/259 (49%), Gaps = 12/259 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R++ + ++ ++A + + Q VL + D+ +G Sbjct: 3 MKFARILVLAIAVAAGVLA-FRMVMMSGGSSDQASNAPVPLEQAKGQVLTAATDILLGAK 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + W +PEE V G + P+A +EL G + + PI KG+PIR E+L++ G Sbjct: 62 LTAEDMVWTDWPEEAVPIGAVTKQVNPSASEELMGQIAKTPIFKGEPIRPERLINTDKGF 121 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +S++LPKGKRA + + + GG I P D VDV++ R + +L NIRV+AID Sbjct: 122 MSAILPKGKRAIAVSVEAETTAGGFILPGDKVDVILTRRTDDT-AISETILENIRVLAID 180 Query: 181 HNI--DSDERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + D++ L TATLELT Q++ + +Q V ++L LRS D +D Sbjct: 181 TTTAGEQDQKNLSPQRTATLELTLGQSEVVAQSQQVGAIALALRSAQDS-------ADDA 233 Query: 238 DVQEEGKEIQIIKAGVIVN 256 + E + + ++K G+ Sbjct: 234 EPTETRRGVNLVKYGITSQ 252 >gi|241207156|ref|YP_002978252.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861046|gb|ACS58713.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 271 Score = 207 bits (526), Expect = 2e-51, Method: Composition-based stats. Identities = 110/265 (41%), Positives = 161/265 (60%), Gaps = 6/265 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AM++ V T+ +N+L+S G+L+VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSGNLSVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDQAVHWMAWPQGGVVPGLITETDKPDAIKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I + + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKDG 259 + G IQ+IK+G IV G Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDAG 265 >gi|325525577|gb|EGD03367.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49] Length = 277 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 73/240 (30%), Positives = 125/240 (52%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK++R + + V A++AG A+ S VQT + + ++ DL +G Sbjct: 1 MKISRAVMM---LVIAMIAGFAAVVFASRWLVQTST------SSVTPIAVAATDLNLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + PN + V++P +V G D +ELDG +VR + +G+P+ KL G G Sbjct: 52 LGPNQVHTVSWPTGSVPPGAFTDP------KELDGRVVRTSLARGEPVIESKLAPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 GLS+++ +G RA T+ ++ V G P ++VDV++ + S+ + +VL +I Sbjct: 106 GLSAVIAEGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQAQQGKSDGQSISKIVLEHIL 165 Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ + Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQIDKQTLNTDGA 225 >gi|110632966|ref|YP_673174.1| putative CpaB2 pilus assembly protein [Mesorhizobium sp. BNC1] gi|110283950|gb|ABG62009.1| putative CpaB2 pilus assembly protein [Chelativorans sp. BNC1] Length = 267 Score = 206 bits (524), Expect = 3e-51, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 119/236 (50%), Gaps = 6/236 (2%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++ + +A +AM P Q + + VL++ DL G V+ Sbjct: 1 MVRILILLFALGSGGIAAWLAMGTAEPTASQPAAAVEQEADPAREVLVAGADLVHGSVLD 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + L W + V FI +P+A Q L G LVR + G+PIR ++L G G LS Sbjct: 61 ESHLRWQPWTAGTVPAVFISRAAKPDAPQALKGSLVRGGFVAGEPIREDRLALPGAGFLS 120 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRVIA 178 LP GKRA + ++ SA GG I PND VD++ + + +LSNIRV+A Sbjct: 121 GQLPSGKRAIAVRVTAESAAGGFILPNDRVDLIHTSVLSGQSGGEQVSSRTILSNIRVLA 180 Query: 179 IDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +D N +SD +V TATLE+ P Q + AA++ +SL LR+ +D + ++ Sbjct: 181 VDQNASGESDGEAVVAKTATLEVEPDQIPIVTAAEASGTISLALRAASDEDEPAAA 236 >gi|134291858|ref|YP_001115627.1| SAF domain-containing protein [Burkholderia vietnamiensis G4] gi|134135047|gb|ABO59372.1| SAF domain protein [Burkholderia vietnamiensis G4] Length = 281 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 70/241 (29%), Positives = 124/241 (51%), Gaps = 23/241 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R ++ +VV+ V L A + A R + + + +V ++ DL +G Sbjct: 1 MKNSRAILMLVVAMVAGLAAVVFASRWL----------MNTSNGSVTSVAVATTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPAGSVPTGAFTDT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDHKTLTTDG 224 Query: 234 S 234 + Sbjct: 225 A 225 >gi|296156488|ref|ZP_06839326.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295893087|gb|EFG72867.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 269 Score = 205 bits (522), Expect = 5e-51, Method: Composition-based stats. Identities = 62/252 (24%), Positives = 121/252 (48%), Gaps = 25/252 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 ++++ + L A + A R + ++++ V+++ D+ +G + P+ L+ Sbjct: 1 MLLIATLAGLTAVVFASRWM----------VSQSSNATTKVVVAATDINLGQRIGPDFLK 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P +V G D+ Q+LDG +++ +L G+P+ KL G GGLS+++ Sbjct: 51 LTEWPSNSVPPGSFTDI------QKLDGRVLKESLLHGEPVLEAKLTPVGTLGGLSAVIG 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179 +GKRA T+ ++ V G P ++VD+++ R P +VL I V+A+ Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDARDPGTQRDQNISKIVLEKILVLAV 164 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + DE + V TLE++P QA+ + A+S+ LSLVLR+ D + + Sbjct: 165 AQEVGRDETKPKVVDAVTLEVSPEQAEKIDLARSIGTLSLVLRNQIDPQAIDTAGATKAT 224 Query: 239 VQEEGKEIQIIK 250 + + + + Sbjct: 225 LLKTPVAVAPVP 236 >gi|170750188|ref|YP_001756448.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] gi|170656710|gb|ACB25765.1| Flp pilus assembly protein CpaB [Methylobacterium radiotolerans JCM 2831] Length = 271 Score = 205 bits (521), Expect = 7e-51, Method: Composition-based stats. Identities = 76/270 (28%), Positives = 124/270 (45%), Gaps = 14/270 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R + ++ A + M P P +VL++ D+ +G V Sbjct: 1 MNPARFAVLGIALAAGTGAAFL-MSGGDPPPPPPPPAAEAPPQPTTDVLVAAIDMPMGQV 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L W +P+ V +G++ P A++E G VR L G+PIR +KLV +G Sbjct: 60 LRAADLRWQPWPDGAVANGYMTRKINPKALEETVGASVRSGFLTGEPIRAQKLVRPESGF 119 Query: 121 LSSLLPKGKRAATMDISI--SSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVL 171 ++++LP G RA + +++ GG I PND VDV+ +L Sbjct: 120 MAAILPPGMRAVAIVTDSRGTNSAGGFILPNDRVDVIRTFRDESNSRANNSDVQLSQTIL 179 Query: 172 SNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-- 227 ++IRV+AI + V+ G TATL +TP QA+ L AQ V L+L LRS+AD Sbjct: 180 TDIRVLAIGQLVQEKNGTNVVTGETATLAVTPAQAETLALAQKVGALTLSLRSLADAGRP 239 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 P ++ ++ Q + +++ GV + Sbjct: 240 PEATPLAEASAAQMPEPALTVVRFGVARQQ 269 >gi|90419763|ref|ZP_01227672.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] gi|90335804|gb|EAS49552.1| Flp pilus assembly protein CpaB [Aurantimonas manganoxydans SI85-9A1] Length = 293 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 87/228 (38%), Positives = 130/228 (57%), Gaps = 11/228 (4%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E P K VL++ DL++G V L+W ++PE+ + I +P+A++ L Sbjct: 58 TAAPAEPPIKLAEVLVTSRDLSMGEAVD-EALDWQSWPEDGIGPTLIRKSDRPDALETLK 116 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G L R G+P+R KL+ G +S++LP GKRA + I+ ++ GG + PNDHVDV Sbjct: 117 GSLARQSFFAGEPVRESKLIRSDQGFMSAVLPAGKRAVAVQIAAETSAGGFVLPNDHVDV 176 Query: 155 VMVRSLS-----ERKPTVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKAL 207 +M R +S + VL N+RV+AID I E+V+VGSTATLE+ P QA+AL Sbjct: 177 IMTRRVSSSENRGDQVLTETVLRNLRVLAIDQTIQEKDGEKVVVGSTATLEVDPEQAEAL 236 Query: 208 VAAQSVA-KLSLVLRSIADLNPSSSEDSDVWDVQEEGK--EIQIIKAG 252 AAQ +A +L L LRS+AD P S + QE + +I++++ G Sbjct: 237 TAAQQIADRLVLSLRSLADSVPGSPGYAAFLLAQENARNGKIRVVRYG 284 >gi|295700371|ref|YP_003608264.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] gi|295439584|gb|ADG18753.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1002] Length = 276 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 66/240 (27%), Positives = 120/240 (50%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + + A++AG+ A+ S +QT +V ++ D+++G Sbjct: 1 MKNSRALVM---LTIAVLAGLAAVSFASRWLLQTSSAA------VTSVAVASSDISLGQP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + N++ V++P +V G D + L+G ++ + G+P+ KL +G G Sbjct: 52 LNQNLIHMVSWPTSSVPPGAFADS------KALEGRVLLTSLAPGEPVLESKLAPQGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIR 175 GLS+++ +G RA T+ ++ V G P ++VDV++ + + + +VL I Sbjct: 106 GLSAVIGEGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQQANKTDASQSISKIVLEKIL 165 Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D S+ + Sbjct: 166 VLAVAQRVSRDDTAPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDKQTPSTGGA 225 >gi|116249980|ref|YP_765818.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] gi|115254628|emb|CAK05702.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 271 Score = 204 bits (519), Expect = 1e-50, Method: Composition-based stats. Identities = 108/264 (40%), Positives = 159/264 (60%), Gaps = 6/264 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AM++ V T+ +N+L+S +L+VG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMQMAGSGGVVTQVRSVVEKEPTVNILVSSANLSVGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LDDQSVHWMAWPQGGVVPGLITEADKPDAVKDLQGAVVRLPIFEGEPIRPEKIADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGAEADKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDSD 235 D I + + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + +D Sbjct: 181 DQQIQEKDDGSKSVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTSAAD 240 Query: 236 VWDVQEEGKE-IQIIKAGVIVNKD 258 + G IQ+IK+G IV Sbjct: 241 YLLSGDNGSAIIQVIKSGAIVTDA 264 >gi|197295152|ref|YP_002153693.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|195944631|emb|CAR57235.1| putative flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 279 Score = 203 bits (518), Expect = 1e-50, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 122/241 (50%), Gaps = 23/241 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R +M +VV+ + L A + A + + + +V ++ DL +G Sbjct: 1 MKNSRAVMMLVVAMIAGLAAVVFASHWL----------MQTSTNSVTSVAVATTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D + L+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFTDT------KALEGRVVRTSLSRGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDG 224 Query: 234 S 234 + Sbjct: 225 A 225 >gi|170692565|ref|ZP_02883727.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] gi|170142221|gb|EDT10387.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] Length = 278 Score = 203 bits (518), Expect = 2e-50, Method: Composition-based stats. Identities = 69/242 (28%), Positives = 119/242 (49%), Gaps = 23/242 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + + AL+AG+ A+ S +QT V ++ ++++G Sbjct: 1 MKTSRAIVM---LGMALLAGLAAVGFASRWLLQTSSSA------LTPVAVATAEVSLGQP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + ++ V +P +V G D + LDG +VR + G+P+ KL +G G Sbjct: 52 LNSTMIRTVNWPTASVPPGAFKDP------KALDGRVVRASLEPGEPVIESKLAPQGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173 GLS+++ +GKRA T+ ++ V G P ++VDV++ E ++ +VL Sbjct: 106 GLSAVIGEGKRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPEAKTADPQQSISKIVLEK 165 Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D + Sbjct: 166 ILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDLARSVGSLSLVLRNQIDDRALPTG 225 Query: 233 DS 234 + Sbjct: 226 GA 227 >gi|186474102|ref|YP_001861444.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184196434|gb|ACC74398.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 282 Score = 203 bits (516), Expect = 2e-50, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 30/248 (12%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R L+ ++V+ L A + A R + + + V+I+ D+++G Sbjct: 1 MKNARALVMLLVATAAGLAAVVFAARWM----------VQQTSTSTTKVVIASADMSLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 V+P +L+ +P +V G +DV ++L+G +++ + +G+P+ KL G Sbjct: 51 RVSPEMLKVSDWPAGSVPPGTFNDV------KKLEGRVLKASLSRGEPVLEAKLSPVGTL 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTV 167 GGLS+++ +GKRA T+ ++ V G P ++VD+++ + Sbjct: 105 GGLSAVINEGKRAITVRVNDVIGVAGFALPGNYVDILVNTEKENASREGAGASGRDQNIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ DE + V TLE+TP QA+ + A+S+ LSLVLR+ D Sbjct: 165 KIVLEKILVLAVAQEAGRDETKPKVVDAVTLEVTPEQAEKIDLARSIGSLSLVLRNQVDP 224 Query: 227 NPSSSEDS 234 +S+ + Sbjct: 225 QDTSTAGA 232 >gi|85373132|ref|YP_457194.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] gi|84786215|gb|ABC62397.1| pilus assembly protein CpaB [Erythrobacter litoralis HTCC2594] Length = 371 Score = 203 bits (516), Expect = 3e-50, Method: Composition-based stats. Identities = 73/253 (28%), Positives = 123/253 (48%), Gaps = 17/253 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A R + E + VL+++ L VG ++T + L + +PEE V D + Sbjct: 21 MAARSMFAGASAPEATAAVQEPQGPKVLVAQRGLPVGTIITADALGFQMWPEELVQDAYF 80 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISS 140 + + + +L G +VR P+ G+P+ LV G+ G L++ L G RA T+ +S ++ Sbjct: 81 --IEGESDITQLLGTVVRHPVTAGEPLTQGTLVSPGDRGFLAAALGPGMRAITVPVSANT 138 Query: 141 AVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDER------VLV 191 V G + P D VD+++ +++ + +L N+RV+A D + V Sbjct: 139 GVAGFVFPGDRVDLMLTQAVKGEETDLKATETILRNLRVLATDQTTEQTTNEAGKTVVRA 198 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-----SSEDSDVWDVQEEGKEI 246 T TLE+TP A+ + AQ++ LSL LRSIAD +S D + D +E Sbjct: 199 FRTVTLEVTPKIAEKVAVAQTLGTLSLALRSIADNQAELERAIASGDVKIPDGASPEEEE 258 Query: 247 QIIKAGVIVNKDG 259 +II+A + DG Sbjct: 259 RIIQAAMNRPNDG 271 >gi|170734869|ref|YP_001773983.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|169820907|gb|ACA95488.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 279 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 73/263 (27%), Positives = 128/263 (48%), Gaps = 23/263 (8%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM +VV+ V L A + A R + + + + +V ++ DL +G Sbjct: 1 MKNSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVASTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D + L+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPAGSVPTGAFTDT------KALEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D ++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGG 224 Query: 234 SDVWDVQEEGKEIQIIKAGVIVN 256 + + + + A V Sbjct: 225 ATKLTLLGKEPVPEAAPAPVHAR 247 >gi|224824212|ref|ZP_03697320.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] gi|224603631|gb|EEG09806.1| Flp pilus assembly protein CpaB [Lutiella nitroferrum 2002] Length = 282 Score = 202 bits (515), Expect = 3e-50, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 119/234 (50%), Gaps = 24/234 (10%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 IVVS + LVA ++A + ++ + V+++ D+ +G ++P +L Sbjct: 1 MIVVSVIIGLVAVVMASQWINKQTNVAAQ----------KVVVASMDIDLGSKLSPEMLR 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 V +P ++ +G I D + LDG +++ + +G+ I KL G GGLS+++ Sbjct: 51 SVDWPSGSIPEGAILDP------KALDGRVLKTSVNRGEAILESKLAPVGTKGGLSAVVM 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAID 180 +GKRA T+ ++ V G P ++VD+++ + +K +VL +I V+A+ Sbjct: 105 EGKRAMTVRVNDVVGVAGFALPGNYVDILVNTTDDAKKGQNNDASISKIVLEHILVLAVA 164 Query: 181 HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D P + Sbjct: 165 QEASRDDTKPKVVNAVTLEVTPEQAEKLDLARSVGTLSLVLRNQVDPKPVQTAG 218 >gi|167584956|ref|ZP_02377344.1| Flp pilus assembly CpaB [Burkholderia ubonensis Bu] Length = 280 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 69/240 (28%), Positives = 120/240 (50%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TR + + + A+VAG+ A+ S VQT V ++ DL +G Sbjct: 1 MKNTRAITM---LIIAMVAGLAAVAFASRWLVQTSTSA------VTQVAVATTDLNLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + +++P +V G D + L+G +VR + +G+P+ KL G G Sbjct: 52 IGPAQIRTISWPTGSVPPGAFTDT------KSLEGRVVRTSLARGEPVLEAKLAPLGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 GLS+++ G RA T+ ++ V G P ++VDV++ ++ +VL +I Sbjct: 106 GLSAVIGAGNRAITVRVNDVVGVAGFALPGNYVDVIVNTQEPGKTDNQQSISKIVLEHIL 165 Query: 176 VIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ D +++ + Sbjct: 166 VLAVAQQVSRDDTQPKVVNAVTLEVSPEQAEKLDVARSVGTLSLVLRNQVDKQTLNTDGA 225 >gi|87199102|ref|YP_496359.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87134783|gb|ABD25525.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 342 Score = 202 bits (514), Expect = 4e-50, Method: Composition-based stats. Identities = 75/251 (29%), Positives = 129/251 (51%), Gaps = 14/251 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +LM +V + + A+ A L + + E + P VL+++ L VG + Sbjct: 1 MDKRKLMLLVGALIVAIGTAFAARSLFAGNSTPQAEAAAKVPTGP-KVLVAQRALPVGTI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + A+P++ V D + V MQ+L G +VR PI G+P+ LV G+ G Sbjct: 60 ITADSINFQAWPKDMVQDAYF--VEGEADMQKLLGTVVRNPITAGEPVTKGNLVAPGDRG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174 L++ L G RA T+ +S + V G + P DH+D+V+ +++ +L N+ Sbjct: 118 FLAAALGAGMRAVTIPVSARTGVAGFVFPGDHIDLVLTQTVKGTGEGMALKASETILKNL 177 Query: 175 RVIAIDHNIDSDE-----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 RV+A D + + ++ RV ST TLE+TP A+ + AQ++ +SL LRS+AD + Sbjct: 178 RVLATDQSTEQEQVEGKTRVRTFSTVTLEVTPKIAEKIAVAQTIGTISLSLRSLADNSAE 237 Query: 230 SSEDSDVWDVQ 240 + DV+ Sbjct: 238 LEQAIAAGDVK 248 >gi|91788410|ref|YP_549362.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] gi|91697635|gb|ABE44464.1| Flp pilus assembly CpaB [Polaromonas sp. JS666] Length = 284 Score = 202 bits (514), Expect = 5e-50, Method: Composition-based stats. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 26/244 (10%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ TR L+ I V+ V A A I+A R +S + A V ++ D+++G Sbjct: 1 MRNTRALVMIAVAVVLAFGAVIVAARWIS----------AQASADTSKVAVAAVDISLGA 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++P ++ V +P + G I D ++L+ + R I +G+P+ KL G Sbjct: 51 RLSPEMVRMVDWPASAMPPGAITDA------KQLETRVTRTSIQRGEPVMEGKLAPPGTQ 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------RSLSERKPTVTVVL 171 GGLS+++ +GKRA T+ ++ V G P + VD+++ + + +VL Sbjct: 105 GGLSAVVAEGKRAMTVRVNDVVGVAGFALPGNFVDILVNTQDEPGKGGAGKDQTISKIVL 164 Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 I V+AI DE + V + TLELTP QA+ L A+SV LSLVLR+ D NP + Sbjct: 165 ERILVLAIAQESSRDETKPKVVNAVTLELTPDQAEKLDLARSVGTLSLVLRNQVDPNPVN 224 Query: 231 SEDS 234 ++ + Sbjct: 225 TKGA 228 >gi|107028249|ref|YP_625344.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116687160|ref|YP_840407.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|105897413|gb|ABF80371.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116652875|gb|ABK13514.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] Length = 279 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 72/258 (27%), Positives = 127/258 (49%), Gaps = 23/258 (8%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM +VV+ V L A + A R + + + + +V ++ DL +G Sbjct: 1 MKNSRALMMLVVAMVAGLAAVVFASRWL----------VQTSTSSVTSVAVATTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D + L+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPAGSVPTGAFTDT------KTLEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D ++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTGG 224 Query: 234 SDVWDVQEEGKEIQIIKA 251 + + + + A Sbjct: 225 ATKLTLLGKEPVPEAAPA 242 >gi|187919323|ref|YP_001888354.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187717761|gb|ACD18984.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 269 Score = 202 bits (513), Expect = 5e-50, Method: Composition-based stats. Identities = 63/248 (25%), Positives = 120/248 (48%), Gaps = 25/248 (10%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 ++++ + L A + A R + ++++ V+++ D+ +G + P+ L+ Sbjct: 1 MLLIATLAGLTAVVFASRWM----------VSQSSNATTRVVVAAADINLGQRIGPDYLK 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P +V G D+ Q+LDG +++ +L+G+PI KL G GGLS+++ Sbjct: 51 LTDWPSNSVPPGSYSDI------QKLDGRVLKESLLRGEPILDAKLTPVGTLGGLSAVIG 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAI 179 +GKRA T+ ++ V G P ++VD+++ R P +VL I V+A+ Sbjct: 105 EGKRAITVRVNDVIGVAGFALPGNYVDIIVNTQKDGRDPGATRDQNISKIVLEKILVLAV 164 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + DE + V TLE+ P QA+ + A+S+ LSLVLR+ D + + Sbjct: 165 AQEVGRDETKPKVVDAVTLEVLPEQAEKIDLARSIGTLSLVLRNQIDPKAIDTAGATKAS 224 Query: 239 VQEEGKEI 246 + + + Sbjct: 225 LLQTPVAV 232 >gi|78060315|ref|YP_366890.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77964865|gb|ABB06246.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 279 Score = 202 bits (513), Expect = 6e-50, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 122/240 (50%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R + + V A+VAG+ A+ S VQT + V ++ DL +G Sbjct: 1 MKNSRAVMM---LVVAMVAGLAAVVFASHWLVQTST------SSVTPVAVATTDLNLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + PN + V++P +V G D L+G +VR + +G+P+ KL G G Sbjct: 52 LGPNQIHMVSWPSGSVPTGAFTDTKG------LEGRVVRTSLSRGEPVIESKLAPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIR 175 GLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 106 GLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHIL 165 Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ + Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLNTDGA 225 >gi|326388865|ref|ZP_08210447.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] gi|326206465|gb|EGD57300.1| Flp pilus assembly CpaB [Novosphingobium nitrogenifigens DSM 19370] Length = 347 Score = 201 bits (511), Expect = 1e-49, Method: Composition-based stats. Identities = 78/269 (28%), Positives = 132/269 (49%), Gaps = 19/269 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +V + +FA+ + A L++ + + VL+++ L VG + Sbjct: 1 MDRKKLILLVGALIFAIATSLAARALLTGGSTP-QAIAAAKVLDGPKVLVAQRALPVGTI 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + A+P++ V D + + MQ+L G +VR PI G PI LV G+ G Sbjct: 60 ITADAVSYQAWPKDLVQDAYF--LQDKTDMQKLLGTVVRNPITAGQPITTGSLVAPGDRG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174 L++ L G RA T+ +S + V G + P DHVD+++ +S+ +L N+ Sbjct: 118 FLAAALGPGMRAVTIPVSTRTGVAGFVFPGDHVDLLLTQSVKGDGESQALKATETILKNL 177 Query: 175 RVIAIDHNIDSD-----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL--- 226 RV+A D + D + RV S T+E TP A+ L A+S+ +SL LRSIAD Sbjct: 178 RVLATDQSTDQETVDGHTRVKGFSLVTVEATPKIAEELAVAESIGTISLSLRSIADNSSE 237 Query: 227 --NPSSSEDSDVWDVQEEGKEIQIIKAGV 253 +S + +E ++IKA + Sbjct: 238 LEQAVASGQVKFPAGASKAEEDRLIKAAM 266 >gi|300021853|ref|YP_003754464.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] gi|299523674|gb|ADJ22143.1| Flp pilus assembly protein CpaB [Hyphomicrobium denitrificans ATCC 51888] Length = 267 Score = 200 bits (510), Expect = 1e-49, Method: Composition-based stats. Identities = 80/269 (29%), Positives = 136/269 (50%), Gaps = 14/269 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +L+G V+ A +A IA ++P V E VL++ D++VG + Sbjct: 1 MKRAQLVGFSVAFAAAALAYYIASAFMTPPK----TVTVEKQVDSTEVLVAATDISVGQI 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V W +P+ V ++ + P E G + R IL G+P+ +KL+ G G Sbjct: 57 VNEGNFHWATWPKSAVTADYVTKANSGPGKAHEFTGAVARSAILSGEPVTTQKLIKAGQG 116 Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174 G L+++LP+G RA + I +A G +I PNDHVDV+++R + + + N+ Sbjct: 117 GVLAAILPQGMRAISTKIKAETAAGSLILPNDHVDVILIRHVRSRSGQEETVADTLFRNV 176 Query: 175 RVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 RV+AI I++ + + STATLEL P QA+ + A S+ +++L LRS+ADL+ Sbjct: 177 RVMAIGQQIETKDGKKSADISASTATLELMPKQAEMMALANSMGEITLSLRSVADLSSDP 236 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 ++ + + ++I++ G G Sbjct: 237 ERAGNLDLNKPQNNSVRIVRYGAKSRVYG 265 >gi|83859356|ref|ZP_00952877.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] gi|83852803|gb|EAP90656.1| Flp pilus assembly CpaB [Oceanicaulis alexandrii HTCC2633] Length = 268 Score = 200 bits (508), Expect = 2e-49, Method: Composition-based stats. Identities = 75/222 (33%), Positives = 115/222 (51%), Gaps = 4/222 (1%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + + VL++ D++ V+ W +P E V FI +P+AM EL G + Sbjct: 40 QAAAPEVVQVLVAARDMSPSSRVSGADFRWTNWPVEAVIPAFITREARPDAMDELSGAVT 99 Query: 99 RVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 R + G+PI KLV G G +++++ G RA + IS S GG I PND VDV++ Sbjct: 100 RAAFVDGEPILPGKLVQPGEAGFMAAVIDPGMRAVAVPISAESGAGGFILPNDRVDVLVT 159 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 S + V++ N+RV+AID +D E V++GSTATLELTP Q ++ + + Sbjct: 160 TSARDMGYISEVLVENVRVLAIDQTYVDDGEGVVLGSTATLELTPQQTSSVALGVAEGDI 219 Query: 217 SLVLRSIADL--NPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 L LRS+AD P +D + G+E++II+ G Sbjct: 220 VLALRSVADREGGPRLPNGADDEAGERRGREVRIIRYGAEQR 261 >gi|167624206|ref|YP_001674500.1| SAF domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167354228|gb|ABZ76841.1| SAF domain protein [Shewanella halifaxensis HAW-EB4] Length = 270 Score = 199 bits (507), Expect = 3e-49, Method: Composition-based stats. Identities = 67/250 (26%), Positives = 117/250 (46%), Gaps = 16/250 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF + A +A + + TE NV+ ++ +G + Sbjct: 1 MNNKTVLFVILSLVFGVTAVYLAQSWLKSN------TQTETVGTTSNVITMVTEVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L PE V G I D+ E +G +V+ + +G+ +R E+L +G G Sbjct: 55 IERKHLALTPVPENLVPKGAITDI------TEAEGQVVKHRLYQGEVLRKERLTPKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + S K +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D + D D Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAEVLMIAKSRGSLQLALRNPNDTAVIELAEIDEPD 226 Query: 239 VQEEGKEIQI 248 E I Sbjct: 227 EDEVEISENI 236 >gi|149186254|ref|ZP_01864568.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] gi|148830285|gb|EDL48722.1| pilus assembly protein CpaB [Erythrobacter sp. SD-21] Length = 361 Score = 198 bits (505), Expect = 4e-49, Method: Composition-based stats. Identities = 71/274 (25%), Positives = 131/274 (47%), Gaps = 16/274 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +V + + A+ ++A + + + ++ VL+++ L G + Sbjct: 1 MDRKKLVLLVGALIVAIGTALVARSMFAGASAPQAQAAAVVESQGPKVLVAQRALPTGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + +PEE V D + D + +L G +VR P+ G+P+ LV G+ G Sbjct: 61 ITADAIGYQLWPEELVQDAYFLDGEA--DVSKLIGTVVRHPVTAGEPVTQGSLVSPGDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 L++ L G RA T+ + S V G + P D VD+V+ +++S +L N+RV Sbjct: 119 FLAAALTPGMRAITVPVDAKSGVAGFVFPGDRVDMVLTQAVSGEGQALKASETILRNLRV 178 Query: 177 IAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS-- 229 +A D +D +V T TLE+TP A+ + AQ++ LSL LR +AD Sbjct: 179 LATDQSTTQTTVDGKTQVRAFRTVTLEVTPTIAEKVAVAQTLGTLSLALRPLADSQGELE 238 Query: 230 ---SSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 +S D + + +E ++++ DG+ Sbjct: 239 RAIASGDLVIPEDATPEEEERMLREVAGRPDDGK 272 >gi|115361032|ref|YP_778169.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115286360|gb|ABI91835.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 281 Score = 198 bits (504), Expect = 7e-49, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRALMMLIIAMVAGLAAVVFASRWLMHTSSSSVTSVAVA----------TTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 S 234 + Sbjct: 225 A 225 >gi|170701162|ref|ZP_02892135.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133943|gb|EDT02298.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 281 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 69/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R LM ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRALMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVA----------TTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 S 234 + Sbjct: 225 A 225 >gi|253996770|ref|YP_003048834.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] gi|253983449|gb|ACT48307.1| Flp pilus assembly protein CpaB [Methylotenera mobilis JLW8] Length = 298 Score = 198 bits (503), Expect = 7e-49, Method: Composition-based stats. Identities = 74/243 (30%), Positives = 121/243 (49%), Gaps = 24/243 (9%) Query: 1 MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK + IVVS L A ++A R +S V+++ ++ +G Sbjct: 1 MKNPRAFLMIVVSVGIGLGAVVLASRWISQQAATVASS---------KVVVAAINIDLGT 51 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118 +TP +L+ +P +V G DD+ + LD +V+ +L+G+P+ KL G Sbjct: 52 PLTPQMLKVADWPRGSVPVGATDDI------KTLDARVVKTSLLQGEPVLESKLAPLGAT 105 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLS 172 GGLS+++ +G RA T+ ++ V G P ++VD+V+ K +VL Sbjct: 106 GGLSAVIAEGNRAMTVRVNDVVGVAGFALPGNYVDIVVNTEDESVKAENVNKSISKIVLE 165 Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +I V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D N ++ Sbjct: 166 HIMVLAVAQEQNRDETKPKVVNAVTLEVTPAQAEKLDLARSVGTLSLVLRNQIDKNVVTT 225 Query: 232 EDS 234 E S Sbjct: 226 EGS 228 >gi|56477529|ref|YP_159118.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] gi|56313572|emb|CAI08217.1| pilus assembly transmembrane protein [Aromatoleum aromaticum EbN1] Length = 283 Score = 197 bits (502), Expect = 1e-48, Method: Composition-based stats. Identities = 66/264 (25%), Positives = 119/264 (45%), Gaps = 30/264 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++V+ + L A ++ R + ++ + ++ +L +G Sbjct: 1 MKAKGMGFLLVAMLAGLAAVVLGTRWLQ----------AKSAGDGNRIAVAAVELQLGSR 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + V +P ++ G D + +LDG + I G+P+ +L G G Sbjct: 51 IAPEAIRLVEWPSGSIPAGAFHD------LAKLDGRVAITGIQPGEPVLESRLAPEGTKG 104 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSN 173 GLS+++P+GKRA T+ ++ V G P ++VD+++ + + +VL Sbjct: 105 GLSAVVPEGKRAITVRVNDVIGVAGFTLPGNYVDIMVNTENTGANRNSADQMISKIVLER 164 Query: 174 IRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D N + + Sbjct: 165 ILVLAVAQEANRDETKPKVVNAVTLEVTPEQAERLDLARSVGNLSLVLRNQIDSNTTDTA 224 Query: 233 DSD------VWDVQEEGKEIQIIK 250 D Q +K Sbjct: 225 GITKAMLLRTPDDAPVTPAPQAVK 248 >gi|323137424|ref|ZP_08072502.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] gi|322397411|gb|EFX99934.1| Flp pilus assembly protein CpaB [Methylocystis sp. ATCC 49242] Length = 267 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 81/245 (33%), Positives = 122/245 (49%), Gaps = 11/245 (4%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 M S Q V+ P VL++ DL G + + WV +P+ +V G + Sbjct: 20 FMMMNSSSPPPQAPVVVAPPPMNTEQVLVATRDLTYGTEIVDQDMAWVEWPKTSVPVGSL 79 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISS 140 PNA +E+ VR+PI G+PIR ++L+ GL S++L GKRA +D+++++ Sbjct: 80 TKTESPNAQEEVKSSYVRIPIAGGEPIRKDRLIKGVTAGLMSTMLSPGKRAIAIDVTLNN 139 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVLSNIRVIAIDHNIDSD--ERVLV 191 GG I PND VDV+ +E VVLSN+RV+A+ I+ E V+ Sbjct: 140 TAGGFILPNDRVDVLRTYRDTEATKDLGHEVYNSEVVLSNVRVLAMGQTIEKKGAEPVVT 199 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 GSTATLEL P QA+ +V AQ +L L LR I D + ++ + +++ Sbjct: 200 GSTATLELDPRQAELVVLAQRTGQLVLSLRPITDA-INKDAAAEAPADPGSDDSLTVVRH 258 Query: 252 GVIVN 256 GV N Sbjct: 259 GVAAN 263 >gi|82703478|ref|YP_413044.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] gi|82411543|gb|ABB75652.1| Flp pilus assembly CpaB [Nitrosospira multiformis ATCC 25196] Length = 261 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 120/234 (51%), Gaps = 18/234 (7%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 IV+S + L A ++A R + I V+++ D+ VG +TP++L+ Sbjct: 1 MIVISLLLGLAAVVVAGRWI----------IDRASVDAATVIVASRDIDVGTRLTPDMLQ 50 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLP 126 +P V +G D LD +V+V +++G+P+ KL +G GGLS ++ Sbjct: 51 PSDWPRATVPEGSFQDAKL------LDTRVVKVNLVRGEPLLEAKLAPQGAAGGLSGVIA 104 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 +GKRA T+ ++ + G P ++VD+++ KP +VL I V+A+ ++ D Sbjct: 105 EGKRAITVKVNEIVGLAGFALPGNNVDILVNAKDENDKPISKIVLERILVLAVGQDLGRD 164 Query: 187 E-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 E + + TLE+TP +A+ L A+S+ LSLVLR+ D +P ++ D+ Sbjct: 165 ETKPKAVTAVTLEVTPQEAEKLDLARSIGTLSLVLRNQIDKSPGTTAGVRTRDL 218 >gi|73542328|ref|YP_296848.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72119741|gb|AAZ62004.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 280 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 69/259 (26%), Positives = 129/259 (49%), Gaps = 26/259 (10%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK TR + +++ + + A + A R + + ++ V+++ DL +G Sbjct: 1 MKNTRAILMLLIALLAGVAAVVSASRWL----------MEQSSNSVKQVVVAANDLNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + + L V +P +V G +D ++ L+G +VR + +G+P+ KL G Sbjct: 51 PLNGSQLRLVNWPTASVPPGAFED------LKLLEGRVVRTSLQRGEPVLDAKLAPIGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174 GGLS+++ GKRA T+ ++ V G P ++VDV++ + + +VL I Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTAQNGSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS---IADLNPSS 230 V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ +AD+N Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADINTGG 224 Query: 231 SEDSDVWDVQEEGKEIQII 249 + + E +++++ Sbjct: 225 ATKGTLLGKAPEAPQVKVV 243 >gi|148557762|ref|YP_001265344.1| SAF domain-containing protein [Sphingomonas wittichii RW1] gi|148502952|gb|ABQ71206.1| SAF domain [Sphingomonas wittichii RW1] Length = 332 Score = 197 bits (501), Expect = 1e-48, Method: Composition-based stats. Identities = 66/252 (26%), Positives = 117/252 (46%), Gaps = 14/252 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ ++++ V A ++ ++A + + V ++ L VG + Sbjct: 1 MDARKLLLLIMALVMAGISAVVARSMFGGNSEAEAAPAAAPQPSGPEVAVAVRPLPVGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P + +P E V + + + + L+G +VR I G P+ LV G+ G Sbjct: 61 IGPESFRYQRWPAELVSKTYF--IKGESDLAALNGSVVRYAITAGAPVTQGALVKPGDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSNI 174 L++ L G RA T+ +S S V G + P D VD+++ + + ++ NI Sbjct: 119 FLAAALGPGMRAVTISVSAQSGVAGFVFPGDRVDLMLTQEVPGGGDGPPLKAAETIIRNI 178 Query: 175 RVIAIDH----NIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 RV+A D +D + + +V +T TLE TP A+ + AQ++ +LSL LRSIAD Sbjct: 179 RVLAADQRTDKTVDEEGKTVVANTSNVTLEATPKIAEKIAVAQTIGQLSLALRSIADDRA 238 Query: 229 SSSEDSDVWDVQ 240 E D++ Sbjct: 239 ELEERIANGDIK 250 >gi|172065272|ref|YP_001815984.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171997514|gb|ACB68431.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 281 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 23/241 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK +R +M ++++ V L A + A R + + + DL +G Sbjct: 1 MKNSRAVMMLIIAMVAGLAAVVFASRWLMNTSSSSVTSVAVA----------TTDLNLGE 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + PN + V++P +V G D +EL+G +VR + +G+P+ KL G Sbjct: 51 PLGPNQIHMVSWPSGSVPTGAFADT------KELEGRVVRTSLARGEPVIESKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNI 174 GGLS+++ G RA T+ ++ V G P ++VDV++ + ++ + +VL +I Sbjct: 105 GGLSAVIADGSRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQQGKTDGQSISKIVLEHI 164 Query: 175 RVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ V + TLE+TP QA+ L A+SV LSLVLR+ D +++ Sbjct: 165 LVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAERLDLARSVGTLSLVLRNQVDQKTLTTDG 224 Query: 234 S 234 + Sbjct: 225 A 225 >gi|218710407|ref|YP_002418028.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] gi|218323426|emb|CAV19603.1| Flp pilus assembly protein CpaB [Vibrio splendidus LGP32] Length = 279 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 52/228 (22%), Positives = 102/228 (44%), Gaps = 11/228 (4%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + ++S VF L A A + + Q + + + V+++ ++ G ++ Sbjct: 33 KSQVFLLFLLSVVFGLAAVFFAKQWM---EDQVQPTVEVEAVERHPVVVASQEIEAGTII 89 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L + + + D EL G +V I G+ + + G G Sbjct: 90 EEQFLATKLMEVDWINENNFSDAS------ELVGKVVANTIYAGEVLHKMRFTIPGEGST 143 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ + V G + P + VD++ S S+ VL +I+V+A+D Sbjct: 144 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILSTVSYSKNSAATRTVLKDIKVLAVD 203 Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++E ++ TLE++P A+ L+ A+S + L LR+ ++ Sbjct: 204 QTAKTNENSPIIVRAVTLEVSPKDAEKLLTAKSKGSIQLTLRNPHEVE 251 >gi|292491518|ref|YP_003526957.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] gi|291580113|gb|ADE14570.1| Flp pilus assembly protein CpaB [Nitrosococcus halophilus Nc4] Length = 265 Score = 197 bits (500), Expect = 2e-48, Method: Composition-based stats. Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 19/261 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K LM ++ V A +A + + + + V+++ ++ G + Sbjct: 3 KRKSLMLFFIAIVLGTGATWMANQWL--QDRMQPGPVEVVAPETAPVVVAALEIPFGQKI 60 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGG 120 L+ +++P +N+ +G + ++G + I G+PI ++ V++ G Sbjct: 61 ETMHLKVISWPADNMPEGIFHETS------AVEGRVASQKIYPGEPIMKDRAVEQLGGST 114 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIA 178 LS+++P+ KRA T+ ++ V G + P + VDV+ R S+ K + +L N++V+A Sbjct: 115 LSAIVPRDKRAVTVRVNDVIGVAGFLLPGNQVDVLSSRKIDRSQNKVQIETILQNLKVLA 174 Query: 179 IDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP-SSSEDSDV 236 +D D+ LV TLE P QA+ L A + LVLR+ D+ E V Sbjct: 175 VDQTASQDKNQPLVVRAVTLEADPKQAEKLFKATEEGTIQLVLRNPQDVAVIKDPEPVKV 234 Query: 237 WDV------QEEGKEIQIIKA 251 Q + +I+ Sbjct: 235 AKKTYSKAPQPISDSVTVIRG 255 >gi|218671060|ref|ZP_03520731.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56] Length = 214 Score = 195 bits (497), Expect = 4e-48, Method: Composition-based stats. Identities = 95/209 (45%), Positives = 133/209 (63%), Gaps = 6/209 (2%) Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G + + + W+A+P++ V GFI + +P+A+++L G +VR+PI +G+PIR EK+ D Sbjct: 1 GARLGDDTVHWMAWPKDGVVQGFITEADKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSS 60 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRV 176 + LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV Sbjct: 61 SRILSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRV 120 Query: 177 IAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE 232 +AID I D + +VG+TATLELTP Q K L AQ +A +LSL LRS+AD + Sbjct: 121 LAIDQQIQEQDDGSKAVVGTTATLELTPDQTKVLAVAQQMADRLSLALRSVADAQEQDTS 180 Query: 233 DSDVWDVQEEGKE-IQIIKAGVIVNKDGE 260 +D + G IQ+IK+G IV GE Sbjct: 181 AADYLLSGDNGSAIIQVIKSGSIVTDAGE 209 >gi|323529414|ref|YP_004231566.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386416|gb|ADX58506.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 278 Score = 195 bits (495), Expect = 6e-48, Method: Composition-based stats. Identities = 60/210 (28%), Positives = 108/210 (51%), Gaps = 14/210 (6%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ ++++G + N++ V +P +V G D + Sbjct: 24 ASRWLLQTSSSAVTPVAVATAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KA 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 LDG +VR + G+P+ KL +G GGLS+++ +GKRA T+ ++ V G P ++ Sbjct: 78 LDGRVVRTSLEPGEPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQA 204 VDV++ E ++ +VL I V+A+ + D+ + V + TLE+TP QA Sbjct: 138 VDVIVNTQEPESKTADPQQSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQA 197 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 + L A+SV LSLVLR+ D P + + Sbjct: 198 EKLDLARSVGSLSLVLRNQIDDRPLPTGGA 227 >gi|264678239|ref|YP_003278146.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] gi|262208752|gb|ACY32850.1| pilus assembly transmembrane protein [Comamonas testosteroni CNB-2] Length = 281 Score = 194 bits (494), Expect = 9e-48, Method: Composition-based stats. Identities = 66/195 (33%), Positives = 105/195 (53%), Gaps = 14/195 (7%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSED 233 VLR+ D +P+S+ Sbjct: 212 VLRNQIDKDPTSTAG 226 >gi|302381757|ref|YP_003817580.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] gi|302192385|gb|ADK99956.1| Flp pilus assembly protein CpaB [Brevundimonas subvibrioides ATCC 15264] Length = 310 Score = 194 bits (493), Expect = 1e-47, Method: Composition-based stats. Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 50/303 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGII--AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK R+ I ++ V A+ + AM S VL++ DLA G Sbjct: 1 MKPARIAVICIAAVSAIGLAFVVRAMGSPSGEPTAVATAAPAPTRPMAKVLVAARDLAPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------------- 87 + LEW +P + V FI D P Sbjct: 61 QRLVEADLEWKDWPVDEVNPAFITDGSVPVPAAAAPEGEAAPATTDTTAESAVARVTRAA 120 Query: 88 ------NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140 A + G +VR PIL G+PI K+V G+ G +++ L G RA + +S+ S Sbjct: 121 NDLTTGGAKADYFGSVVREPILAGEPIVGRKIVRAGDSGYMAAYLEPGMRAMAIGVSVES 180 Query: 141 AVGGMIKPNDHVDVVMVR--------SLSERKPTVTVVLSNIRVIAIDH--NIDSDERVL 190 A GG I P D VDV++ K +V+ N++V+AID D++ + Sbjct: 181 AAGGFILPGDRVDVIVTVEQQAGNDDDAGRAKFASRIVMQNVKVLAIDQSTRAGDDQQAV 240 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 VG+TATLE+ P A+ + A++ LSLVLRS AD + S S E I++ + Sbjct: 241 VGATATLEVAPQDAEVVALAKAAGTLSLVLRSYADTSGPSGRVSMPPRASERSTAIRVFR 300 Query: 251 AGV 253 G Sbjct: 301 GGE 303 >gi|89899602|ref|YP_522073.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] gi|89344339|gb|ABD68542.1| Flp pilus assembly CpaB [Rhodoferax ferrireducens T118] Length = 286 Score = 193 bits (492), Expect = 2e-47, Method: Composition-based stats. Identities = 59/242 (24%), Positives = 110/242 (45%), Gaps = 25/242 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + L A +A R + + + ++ D+ +G Sbjct: 1 MRSRGILMLFIAVIAGLAAVFLATRWMQGQG-----------GEGGRIAVANTDIELGGR 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++P ++ +P + G + +L+G +V V + +G+P+ +L G G Sbjct: 50 ISPEMIRMADWPLGSTPTGAYKEAA------KLEGRVVLVSMQRGEPLIEARLAPIGTKG 103 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVLSN 173 GLS+++P+GKRA T+ ++ V G P VDV++ + +VL Sbjct: 104 GLSAVVPQGKRAMTVRVNDVVGVAGFALPGTFVDVMVNTQDEGGQRNDRDRSVSKIVLER 163 Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 I V+A+ D D + V + TLE+TP A+ L A+SV LSLVLR+ D ++ Sbjct: 164 ILVLAVAQEADRDSTKPRVVNAVTLEVTPRDAEMLDLARSVGTLSLVLRNQTDPKGVAAT 223 Query: 233 DS 234 Sbjct: 224 GG 225 >gi|85707703|ref|ZP_01038769.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] gi|85689237|gb|EAQ29240.1| pilus assembly protein CpaB [Erythrobacter sp. NAP1] Length = 365 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 79/273 (28%), Positives = 135/273 (49%), Gaps = 19/273 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ ++ + V A+ + +A + + T + E VL++ L G + Sbjct: 1 MDRKKLVLLLGALVVAIGSAFLARSMFAGDPAPTAQAAPEPTGP--KVLVANRALPAGTI 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 +T + + + +PEE V D + + + M +L G +VR P+ G+P+ LV G+ G Sbjct: 59 ITADAMGYQMWPEELVQDAYF--IEGESDMSQLLGTVVRFPVTAGEPVTQGSLVSPGDRG 116 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 L++ L G RA T+ +S + V G + P D VDVV+ +++S VL N+RV Sbjct: 117 FLAAALGPGMRAVTVPVSAKTGVAGFVFPGDRVDVVLTQTVSGEGRPLNAAETVLRNLRV 176 Query: 177 IAIDHNIDS---DERVLVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS- 229 +A D + DE V T TLE+TP A+ + AQ++ +L+LVLRSIAD Sbjct: 177 LATDQTTEQVTNDEGKTVVRAFRTVTLEVTPQIAEKVAVAQTIGQLTLVLRSIADNQAEL 236 Query: 230 ----SSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 +S D ++ D +E +I++ + D Sbjct: 237 ERAIASGDLEIPDDATPEEEERILRTAMGQPVD 269 >gi|16263309|ref|NP_436102.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] gi|14523988|gb|AAK65514.1| CpaB2 pilus assembly protein [Sinorhizobium meliloti 1021] Length = 263 Score = 193 bits (491), Expect = 2e-47, Method: Composition-based stats. Identities = 81/256 (31%), Positives = 125/256 (48%), Gaps = 18/256 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A + + EV VL++ +L G V+ Sbjct: 1 MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVIE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI +P+A L G L + G+PIR +KL G G LS Sbjct: 58 ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDV+ S K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I D + +S ++ Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEA- 235 Query: 236 VWDVQEEGKEIQIIKA 251 EG +++ Sbjct: 236 ------EGTRPGVVRF 245 >gi|167924331|ref|ZP_02511422.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 281 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 115/240 (47%), Gaps = 21/240 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +R ++ + A +A + S VQT V ++ D+++G Sbjct: 1 MKNSRAFTMLAIAILAGLAAV---AFASRWLVQTSSSA------VTPVAVAATDVSLGEP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + PN L V +P +V G D+ L+G +VR + +G+P+ KL G G Sbjct: 52 LGPNQLRIVNWPTASVPPGAFTDLKP------LEGRVVRTSLARGEPVLGTKLAPVGTKG 105 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIR 175 GLS+++ G RA T+ ++ V G P ++VDV++ ++ +VL I Sbjct: 106 GLSAVIAPGHRAITVRVNDVVGVAGFALPGNYVDVIVNTQEQSKADPQQSISKIVLEKIL 165 Query: 176 VIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+ + D+ V + TLE++P QA+ L A+SV LSLVLR+ D + S+ + Sbjct: 166 VLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEKLDLARSVGTLSLVLRNQIDKDALSTGGA 225 >gi|299532591|ref|ZP_07045980.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] gi|298719394|gb|EFI60362.1| pilus assembly transmembrane protein [Comamonas testosteroni S44] Length = 281 Score = 193 bits (490), Expect = 2e-47, Method: Composition-based stats. Identities = 66/208 (31%), Positives = 108/208 (51%), Gaps = 14/208 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQNGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 E + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 TEESRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPEDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246 VLR+ D +P+S+ + + + Sbjct: 212 VLRNQIDKDPTSTAGITKHQLFGTPEPV 239 >gi|307726374|ref|YP_003909587.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307586899|gb|ADN60296.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 278 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 61/209 (29%), Positives = 106/209 (50%), Gaps = 14/209 (6%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + ++ + + V + ++++G + N++ V +P +V G D + L Sbjct: 25 SRWLLQTSSSAVTPVAVVTAEVSLGQPLNANMIRTVNWPTASVPPGAFKDP------KAL 78 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 DG +VR + G+P+ KL +G GGLS+++ +GKRA T+ ++ V G P ++V Sbjct: 79 DGRVVRTSLEPGEPVIESKLAPQGTKGGLSAVIGEGKRAITVRVNDVVGVAGFALPGNYV 138 Query: 153 DVVMVRSLSERK------PTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205 DV++ E K +VL I V+A+ + D+ + V + TLE+TP QA+ Sbjct: 139 DVIVNTQEPEAKTADPQHSISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAE 198 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D P + + Sbjct: 199 KLDLARSVGSLSLVLRNQIDDRPLPTGGA 227 >gi|187927688|ref|YP_001898175.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|187724578|gb|ACD25743.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] Length = 283 Score = 193 bits (490), Expect = 3e-47, Method: Composition-based stats. Identities = 69/261 (26%), Positives = 126/261 (48%), Gaps = 28/261 (10%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R ++ ++V+ V + A + A R +S ++ + V+++ D+ +G Sbjct: 1 MKNARAIVMLIVALVAGIAAVVSASRWLSQ----------QSTSSVKQVVVAASDMDLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + L V++P ++ G DD + L G +VR + KG+PI KL G Sbjct: 51 PLGNEQLRTVSWPAGSLPPGTFDDP------KALQGRVVRASLQKGEPILENKLAPIGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV------VLS 172 GGLS+++ +GKRA T+ ++ V G P + VDV++ + + + VL Sbjct: 105 GGLSAVIAEGKRAITVRVNDVVGVAGFALPGNLVDVIVNTNEDAKSASNNNNSISKIVLE 164 Query: 173 NIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D+ +++ Sbjct: 165 KILVLAVAQQVSRDDTQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQVDVAATAT 224 Query: 232 EDS---DVWDVQEEGKEIQII 249 + + +++ Sbjct: 225 GGATKGTLLGTPAAEPAPKVV 245 >gi|53723206|ref|YP_112191.1| pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76817358|ref|YP_336468.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126444606|ref|YP_001064075.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126455786|ref|YP_001076988.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|167829714|ref|ZP_02461185.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 9] gi|167899812|ref|ZP_02487213.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 7894] gi|167916475|ref|ZP_02503566.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 112] gi|217424287|ref|ZP_03455786.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|226194084|ref|ZP_03789685.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237507313|ref|ZP_04520028.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242313081|ref|ZP_04812098.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254182584|ref|ZP_04889178.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254187135|ref|ZP_04893650.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254262844|ref|ZP_04953709.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|254296484|ref|ZP_04963940.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|52213620|emb|CAH39674.1| putative pilus assembly-related, exported protein [Burkholderia pseudomallei K96243] gi|76581831|gb|ABA51305.1| pilus assembly transmembrane protein [Burkholderia pseudomallei 1710b] gi|126224097|gb|ABN87602.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126229554|gb|ABN92967.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|157806446|gb|EDO83616.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|157934818|gb|EDO90488.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184213119|gb|EDU10162.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|217392752|gb|EEC32775.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|225934029|gb|EEH30015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|234999518|gb|EEP48942.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242136320|gb|EES22723.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254213846|gb|EET03231.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 281 Score = 192 bits (489), Expect = 3e-47, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225 >gi|77919344|ref|YP_357159.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] gi|77545427|gb|ABA88989.1| Flp pilus assembly protein CpaB [Pelobacter carbinolicus DSM 2380] Length = 272 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 58/237 (24%), Positives = 106/237 (44%), Gaps = 9/237 (3%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ + ++ +F ++A I+ R +S V E ++++ D+ +G + Sbjct: 3 KYGTIIALALAVIFGVIAVILVNRWLS-SKVSQEATTPRESIAMTEIVVAAADVNIGTRL 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 +L +P+ +V G +D+ +++ G + ++ G PI +L +G G Sbjct: 62 DQTLLAMAQWPKASVPKGAFEDI------EQVVGRVSVSKMVTGTPILAAELAAPNSGAG 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L +L+ G RA + ++ VGG I PN VD++ + S+R L + V+AI Sbjct: 116 LVALIKPGMRAMAIKVNEVVGVGGFILPNTFVDIISLDERSKRTKVADTFLHKVEVLAIA 175 Query: 181 HNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + + V T TLELTP A+ LV + LVLR+ D + V Sbjct: 176 QETFIEEGKPKVVRTVTLELTPEDAEKLVEKTHEGPIQLVLRNPLDEKETPPPPKKV 232 >gi|241662166|ref|YP_002980526.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|309780761|ref|ZP_07675502.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] gi|240864193|gb|ACS61854.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|308920443|gb|EFP66099.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] Length = 283 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 58/213 (27%), Positives = 108/213 (50%), Gaps = 18/213 (8%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + ++ + + ++ D+ +G ++P ++ V +P ++ G I+D H L Sbjct: 25 SRWLTQQSGSGITKIAVAATDIDLGQRLSPEAIKLVDWPASSLPPGAINDPH------AL 78 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 DG +VR + +G+P+ KL G GGLS+++ +GKRA T+ ++ V G P +V Sbjct: 79 DGRVVRASLTRGEPVLDSKLTPVGTAGGLSAVIAEGKRAITVRVNDVVGVAGFALPGSYV 138 Query: 153 DVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTP 201 D+++ R + +VL I V+A+ ++ D+ + V + TLE+TP Sbjct: 139 DIIVNTQQDSREAKPGADRNDQSISKIVLEKILVLAVAQEVNRDDTKPKVVNAVTLEVTP 198 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 QA+ + A+SV LSLVLR+ D + + Sbjct: 199 EQAEKIDLARSVGNLSLVLRNQVDSQHDVTAGA 231 >gi|254192395|ref|ZP_04898834.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169649153|gb|EDS81846.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 281 Score = 192 bits (489), Expect = 4e-47, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDTLSTGGA 225 >gi|86147468|ref|ZP_01065780.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] gi|85834761|gb|EAQ52907.1| Flp pilus assembly protein CpaB [Vibrio sp. MED222] Length = 249 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 54/228 (23%), Positives = 102/228 (44%), Gaps = 11/228 (4%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + ++S VF L A A + + Q + I + V+++ ++ G V+ Sbjct: 3 KSQVFLLFLLSVVFGLAAVFFAKQWMDN---QVQPTIEVEEVERHPVVVASQEIEAGTVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L + + + D + EL G +V I G+ + + G G Sbjct: 60 EDQYLTTKLMEVDWINENNYSDQN------ELIGKVVANTIYAGEVLHKLRFTVPGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A+D Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATRTVLKDIKVLAVD 173 Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + E ++ TLE+TP A+ L+ A+S + L LR+ +++ Sbjct: 174 QTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEVD 221 >gi|254418623|ref|ZP_05032347.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] gi|196184800|gb|EDX79776.1| Flp pilus assembly protein CpaB [Brevundimonas sp. BAL3] Length = 305 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 79/298 (26%), Positives = 123/298 (41%), Gaps = 45/298 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R+ I ++ V AL ++ + + +L++ +L G Sbjct: 1 MKPARIAVICIAAVSALGLALVVRAMGNGEPAAPAAAAPVETRPMAKILVAAKNLEPGKR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDD-------------------------------VHQPNA 89 + L W +P + V FI D + P A Sbjct: 61 LAEADLAWKDWPVDEVNPAFITDGSTPIPAKPAPEGAGEKAGAAVERVAEAAGQMAGPGA 120 Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKP 148 + G +VR PIL G+PI K+V G+ G L++ L G RA + +++ SA GG I P Sbjct: 121 KSDYIGSVVREPILAGEPIVGRKIVRAGDSGYLAAYLEPGMRAMAIAVTVESAAGGFILP 180 Query: 149 NDHVDVVMVRS-----------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTA 195 D VDVV+ + K + V+ N++V+AID D + +VG+TA Sbjct: 181 GDRVDVVLTVQNEGGGSAVEGGGATAKYSSATVMQNVKVLAIDQSTRAGDDAQAVVGATA 240 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 TLE+ P A L A+S +LSL LRS AD S V + +++ + G Sbjct: 241 TLEVRPQDAVLLAQAKSEGELSLSLRSYADTAGPSGATRAPRAVASASRSVRVYRGGE 298 >gi|154250688|ref|YP_001411512.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154638|gb|ABS61855.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 250 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 85/259 (32%), Positives = 139/259 (53%), Gaps = 16/259 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ +V++ V A +A ++A LVS + E+ + E P VL++ +L +G Sbjct: 1 MNPVRIGVLVLALVAAGLAALLARGLVSGNDEPVEQKVVEAP--TTEVLVASSNLQLGQR 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119 + L W +P+ ++ +I P A++E G + R +L G+P+ EKLV G G Sbjct: 59 IGGGDLRWQRWPDTSLNGAYITRNQSPAALEEYTGSVARASLLSGEPVTSEKLVTLTGAG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +S+L+ G RA + I+ ++ GG I PND VD+V + +L NIRV+AI Sbjct: 119 FMSALIEPGMRATAISITPETSAGGFILPNDRVDIVDLAKGQ-------TILRNIRVLAI 171 Query: 180 DHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 D D E+V VG TATLELTP Q + + A++ ++ L LRS+A+ + + SE + Sbjct: 172 DQRFDEKAGEQVAVGRTATLELTPAQVEVVSVAEAEGRIGLSLRSMAEQDLAGSEKT--- 228 Query: 238 DVQEEGKEIQIIKAGVIVN 256 V E G +++++ G N Sbjct: 229 -VAEGGSVVKVVRYGTAQN 246 >gi|167744174|ref|ZP_02416948.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 14] Length = 281 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225 >gi|220923695|ref|YP_002498997.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219948302|gb|ACL58694.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 264 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 75/263 (28%), Positives = 126/263 (47%), Gaps = 20/263 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL ++V+ + A +A+ L V +VL+ +LA G +T Sbjct: 1 MLRLCLLIVALGAGIAAAWLAVSL--RDQPVAAVVPAPVQPATQDVLVVSTELAQGERLT 58 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + W +PE + ++ +P A+ E G +R + G+P++ KL G L+ Sbjct: 59 KENMRWQPWPESALNSAYVTRSARPAALDEFAGSTLRSRMAPGEPVQDGKLAGLNAGFLA 118 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 ++LP GKRA + IS + GG I P+D VDV+ + R+ +L N+ V+ Sbjct: 119 TVLPSGKRAVAVRISAENTAGGFILPSDRVDVIHTFAPQAQGEGAREHRSRTILKNVPVL 178 Query: 178 AIDHNIDSDERV--------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 AID +D ++ ++G TATLEL QA+ L AA++ LSL LRS AD N Sbjct: 179 AIDQTVDEAQKADKGKGKSVVIGKTATLELDSRQAEILAAAEAAGTLSLSLRSAADSNEV 238 Query: 230 SSEDSDVWDVQEEGKEIQIIKAG 252 + ++ E + +++I+ G Sbjct: 239 PTAATE-----ERIQTVRVIRGG 256 >gi|163738371|ref|ZP_02145786.1| CpaB family protein [Phaeobacter gallaeciensis BS107] gi|161388292|gb|EDQ12646.1| CpaB family protein [Phaeobacter gallaeciensis BS107] Length = 286 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 112/247 (45%), Gaps = 14/247 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A ++ + + E ++V I+ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYITAYQNELARERASRGENIPLVDVFIANDQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFI---DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 +T + + V +PE + +G D + P +L +V + K + I K+ Sbjct: 61 ERLTRDSVRSVRWPENAIPEGAFLTMDALFPPQYPDDL--RVVLRRMEKDEAILAVKVTK 118 Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTV 169 G + G++S L KG RA + + +SS V G ++P DHVDV SL+++ + Sbjct: 119 PGEDAGITSRLAKGMRAFAIRVDVSSGVSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRL 178 Query: 170 VLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 + +NI +IA+D D + ++ T T + P Q AL AQS +LSL L D Sbjct: 179 IQTNIELIAVDQTAGGDLDGAVIARTVTAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTV 238 Query: 229 SSSEDSD 235 +S + D Sbjct: 239 ASVIEVD 245 >gi|303248301|ref|ZP_07334563.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] gi|302490326|gb|EFL50238.1| Flp pilus assembly protein CpaB [Desulfovibrio fructosovorans JJ] Length = 304 Score = 192 bits (488), Expect = 4e-47, Method: Composition-based stats. Identities = 65/251 (25%), Positives = 116/251 (46%), Gaps = 16/251 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++++ + A+ AG++ +R + + + AK ++VL++ + G Sbjct: 1 MKSKAIPHMILAVILAVAAGVLTIRWLGSVRGPGQAQRPKVEAKKVDVLVAARAIPKGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + +L + E V G + A+ E +G + I K DPI +KL+ +G Sbjct: 61 LDAAMLRLKPYEAEAVPGGALR------AVAEAEGRVAARDISKDDPITPDKLMAKGVTR 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRV 176 GGL + + GKRA T+ + GG++ P VDVV+ R + + V+L NI V Sbjct: 115 GGLDAAVAPGKRAVTVKGTKVMGSGGLVTPGSRVDVVVTYSRPGKQEEKVSKVILENIPV 174 Query: 177 IAIDHNIDS----DERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +A ++ D R + ST TL +TP +A+ L A + + + LR D + Sbjct: 175 LATGTELEPRIGKDGREELASTDSFTLMVTPEEAERLALAADLGSMHMALRKPGDDDVVK 234 Query: 231 SEDSDVWDVQE 241 + +DV E Sbjct: 235 TPGADVAGSLE 245 >gi|300692330|ref|YP_003753325.1| pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] gi|299079390|emb|CBJ52061.1| Putative pilus assembly (cpaB), transmembrane protein [Ralstonia solanacearum PSI07] Length = 284 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 30/248 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGII-AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK R+ +++ A +A ++ A R + + ++ + V ++ D+ +G Sbjct: 1 MKNLRIFSMLLIAAIAGLAAVMFASRWL----------MQQSASGITKVAVASADVELGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++P +++ V +P ++ G + D H LDG +V+ + +G+P+ KL G Sbjct: 51 RLSPEMVKLVDWPAASLPPGVVTDAH------ALDGRVVKASLTRGEPVLESKLTPVGTA 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----------PTV 167 GGLS+++ GKRA T+ ++ V G P +VDV++ E++ Sbjct: 105 GGLSAVIADGKRAITVRVNDVVGVAGFALPGSYVDVIVNTMEDEKQAKAAGNDQKEHSIS 164 Query: 168 TVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL I V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ AD Sbjct: 165 KIVLEKILVLAVAQEVGRDDTKPKVVNAVTLEVTPDQAEKLDLARSVGTLSLVLRNQADP 224 Query: 227 NPSSSEDS 234 + + + Sbjct: 225 RAADTTGA 232 >gi|157961833|ref|YP_001501867.1| SAF domain-containing protein [Shewanella pealeana ATCC 700345] gi|157846833|gb|ABV87332.1| SAF domain protein [Shewanella pealeana ATCC 700345] Length = 272 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 61/244 (25%), Positives = 118/244 (48%), Gaps = 16/244 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF + A +A + + TE A NV+ ++ +G + Sbjct: 1 MNNKTVLFVILSLVFGVTAVYLAQNWLKTNTK------TEAVASTSNVMTMVTEVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L + + +G I D+ E +G +V+ + +G+ +R E++ +G G Sbjct: 55 IERKHLALTPVADNLIPEGAITDI------TEAEGFVVKHRLYQGEVLRKERITPKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + + K +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFTTPSLK--TDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D D + + Sbjct: 167 DQKASNDENKPVLVRAVTLELSLEQAETLMIAKSRGSLQLALRNPNDTAVIELADIEEAN 226 Query: 239 VQEE 242 E+ Sbjct: 227 KTEK 230 >gi|227818614|ref|YP_002822585.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] gi|36958870|gb|AAQ87295.1| Pilus assembly protein, CpaB [Sinorhizobium fredii NGR234] gi|227337613|gb|ACP21832.1| CpaB2, Flp pilus assembly protein CpaB [Sinorhizobium fredii NGR234] Length = 263 Score = 192 bits (488), Expect = 5e-47, Method: Composition-based stats. Identities = 84/257 (32%), Positives = 129/257 (50%), Gaps = 15/257 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL+ ++ + A +A+ V+ EV + VL++ +LA G + Sbjct: 1 MIRLVILLFALASGGAASWLALGFADQPTVEAAEV---QQSPSQEVLVAAQELARGTTLE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L W A+ E + FI +P+A + L G+L + + G+PIR +KL RG G LS Sbjct: 58 EPHLRWQAW-EGEIPPVFISRSARPDAKESLKGLLAQSSFVAGEPIREDKLAQRGAGFLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 S+LP GKRA + ++ S GG I PNDHVDV+ S + K VLSNIRV+ Sbjct: 117 SMLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDSSGKDGKVVSRAVLSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D I D +VG TATLE P Q + AA++ +SL LR++AD + +++ Sbjct: 177 AVDQTISEGADGTSVVGKTATLEADPGQIDIIAAAEASGTVSLALRAVADNLEAPVVETE 236 Query: 236 VWDVQEEGKEIQIIKAG 252 ++I+ G Sbjct: 237 ----GSRPGVVRIVSGG 249 >gi|167841424|ref|ZP_02468108.1| putative pilus assembly protein CpaB [Burkholderia thailandensis MSMB43] Length = 281 Score = 192 bits (487), Expect = 6e-47, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+ +G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPIGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPDQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + ++ + Sbjct: 198 LDLARSVGTLSLVLRNQIDKDALNTGGA 225 >gi|227819322|ref|YP_002823293.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] gi|227338321|gb|ACP22540.1| CpaB pilus assembly protein [Sinorhizobium fredii NGR234] Length = 352 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 55/258 (21%), Positives = 110/258 (42%), Gaps = 8/258 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ ++V+ + AL A ++ + + V ++ + G Sbjct: 21 MRSSTMISLIVALLLALGAVFATRSFLADQQARLVSANAPKAEERTLV-VAAKPMRFGDR 79 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V L+ + +P E +G + + + I G+P+ K+ G Sbjct: 80 VRSENLKAIPWPSEERPEGSFQTLEAVLG-DDTEPRYAMEAIDPGEPVLTSKITGTGERA 138 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ R + + V V+L ++ Sbjct: 139 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRQQNNSEQTYVDVLLQGVK 198 Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + + T T E+T +A+ L S+ LSL LR+IA N + Sbjct: 199 VLAVDQTADERKDEPSIVKTVTFEVTTDEAQRLTLGASIGTLSLTLRNIASSNVEQTRPI 258 Query: 235 DVWDVQEEGKEIQIIKAG 252 V D+ + K+ Sbjct: 259 TVADLGGGLISADLAKSA 276 >gi|148976663|ref|ZP_01813350.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964014|gb|EDK29272.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 249 Score = 191 bits (486), Expect = 7e-47, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 108/257 (42%), Gaps = 17/257 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + ++S VF L A A + + Q + I + V+++ ++ G V+ Sbjct: 3 KSQVFLLFLLSVVFGLAAVFFAKQWMD---DQVQPTIEVEKVERHPVVVASQEIEAGTVI 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L + + + D +EL G +V I G+ + + G G Sbjct: 60 EEQFLTTKLMEVDWINENNYSD------KEELIGKVVANTIYAGEVLHKLRFTVPGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A+D Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTVSYGKNSAATQTVLKDIKVLAVD 173 Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + E ++ TLE+TP A+ L+ A+S + L LR+ ++ + V Sbjct: 174 QTARTKENSPIIVRAVTLEVTPKDAEKLLTAKSKGSIQLTLRNPHEV------EKKVVRR 227 Query: 240 QEEGKEIQIIKAGVIVN 256 + IIK N Sbjct: 228 YVPRPSVTIIKGTETSN 244 >gi|294140773|ref|YP_003556751.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293327242|dbj|BAJ01973.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] Length = 270 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 58/249 (23%), Positives = 116/249 (46%), Gaps = 20/249 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S F +VA +A + + T P V+ + +G + Sbjct: 1 MNNKTMLFVLLSLAFGVVAVFLAQSWLESNSE------TGGPENTSTVITMATLVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L+ P+ + + I +E +G++V+ + G+ +R E+++ +G G Sbjct: 55 LERKHLKLTPMPKSVIPETAIKT------FEEAEGMVVKHNLYTGEILRSERIIKKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + +VL+N++++AI Sbjct: 109 TLASLISPNMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKKDGALH-TDIVLANVKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLEL+ QA+ L+ A+ KL L LR+ D S + ++ Sbjct: 168 DQRSSNDENKPKLVRAVTLELSLEQAEILLIAKGRGKLQLALRNPND-----SAEVELAL 222 Query: 239 VQEEGKEIQ 247 + E K + Sbjct: 223 INETEKREK 231 >gi|194288837|ref|YP_002004744.1| pilus assembly transmembrane protein [Cupriavidus taiwanensis LMG 19424] gi|193222672|emb|CAQ68675.1| PILUS ASSEMBLY TRANSMEMBRANE PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 279 Score = 191 bits (486), Expect = 8e-47, Method: Composition-based stats. Identities = 71/252 (28%), Positives = 122/252 (48%), Gaps = 23/252 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK TR ++ ++++ V + A + A R + + + + + DL +G Sbjct: 1 MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVKQVVV----------AANDLNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + L V++P +V G D ++ L+G +VR + +G+PI KL G Sbjct: 51 PLNGAQLRMVSWPAGSVPPGAFTD------LKALEGRVVRTSLQRGEPILDAKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNI 174 GGLS+++ GKRA T+ ++ V G P ++VDV++ S+ +VL I Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKSSQNSSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + DE + V + TLE+TP QA+ L A+SV LSLVLR+ D+ S+ Sbjct: 165 LVLAVAQQVSRDETQPKVVNAVTLEVTPDQAEKLDVARSVGTLSLVLRNQMDVADISTGG 224 Query: 234 SDVWDVQEEGKE 245 + + + E Sbjct: 225 ATKGTLLGKAPE 236 >gi|323499922|ref|ZP_08104881.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] gi|323315163|gb|EGA68215.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] Length = 247 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ ++S VF L A A + + Q + + + V+I+ ++ G + Sbjct: 7 ILLFLLSIVFGLGAVFFAKQWMDR---QLQPQVEMELIEREPVIIASQEIPAGTPIEEQH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124 + + +G +EL G +V I +G+ + +L G G L+SL Sbjct: 64 VSSRLLEVDWRNEGQFTKA------EELIGQVVATTIYQGEVVHQNRLAAPGEGSTLASL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +P+ KRA T+ ++ V G + P + VDV+ S VL +I+V+A+D Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNRVDVLNTIKYSSTYANTVTVLKDIKVLAVDQTAR 177 Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + E + ++ TLE++P A+ L+ A+S ++ L LR+ + Sbjct: 178 TKENKPIIVRAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEE 221 >gi|307304372|ref|ZP_07584123.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] gi|307318079|ref|ZP_07597515.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306896120|gb|EFN26870.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti AK83] gi|306902574|gb|EFN33168.1| Flp pilus assembly protein CpaB [Sinorhizobium meliloti BL225C] Length = 263 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 121/240 (50%), Gaps = 11/240 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A + + EV VL++ +L G VV Sbjct: 1 MIRIVILLLALASGGAASWLA---LGTGDQRAVEVAEVQETPSQEVLVAAAELKRGAVVE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI +P+A L G L + G+PIR +KL G G LS Sbjct: 58 ENQLRWQPW-EGEIPPVFISRSSRPDATTALKGSLALSGFVAGEPIRDDKLAQGGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-----SLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDV+ S K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVIHTVARPDASGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I D + +S +++ Sbjct: 177 AVDQTVSQASDGASVIGKTATLEVDPEQISAVAAAEASGTVSLALRAITDNHEASVVEAE 236 >gi|103486618|ref|YP_616179.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] gi|98976695|gb|ABF52846.1| Flp pilus assembly CpaB [Sphingopyxis alaskensis RB2256] Length = 345 Score = 191 bits (485), Expect = 9e-47, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 108/242 (44%), Gaps = 17/242 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++M IV + V A+ A ++ +L++ L VG + Sbjct: 1 MDTRKIMLIVGALVIAIGAAFGVNYMMRGAGAPAARAAAAPEITGPMILVATRQLPVGTI 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 V P+ + +P++ V + + V + + L G +VR PI G P+ LV G Sbjct: 61 VGPDSFRFQPWPKDLVENAYF--VKEKTDVNTLVGTVVRHPITAGQPLTQGALVHPNDRG 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---------LSERKPTVTVV 170 L++ L G RA T+ +S V G + P D VDVV+ ++ ++ T + Sbjct: 119 FLAAALGPGMRAITVKVSQEQGVAGFVFPGDRVDVVLTQTIEVEEGSTYPDDQIFTAETI 178 Query: 171 LSNIRVIAIDHNIDSDERV--LVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + NIRV+A D D+++ T TLE TP A+ + AQ + +LSL LR +A+ Sbjct: 179 VRNIRVLATDQRYDAEDETGKTPVRTFGSVTLEATPEIAEKIAVAQGMGRLSLALRPLAE 238 Query: 226 LN 227 Sbjct: 239 SA 240 >gi|260431083|ref|ZP_05785054.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] gi|260414911|gb|EEX08170.1| Flp pilus assembly protein CpaB [Silicibacter lacuscaerulensis ITI-1157] Length = 293 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 63/252 (25%), Positives = 105/252 (41%), Gaps = 17/252 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP----------AKFINVLI 50 M+ + ++V A A +A ++ + + VL+ Sbjct: 1 MRAVFGLVLIVGIALAGGAVYLARNYITEYQNALARERQAAQEALASAKVDVVPTVGVLV 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + L G +T + V +PE V +G ++ + V + K + I Sbjct: 61 ANRPLKYGERLTEEDIRVVDWPENAVPEGAFTEMAALFPETGANERFVLRAMEKDEAIME 120 Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RK 164 K+ G GL+S L KG RA + + ++S V G ++P D VDV SLS R Sbjct: 121 VKVTKPGELAGLTSRLEKGMRAFAISVDVASGVSGFLRPGDVVDVYWTGSLSGAVEGARG 180 Query: 165 PTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ +NI +IA+D + SD + T T+ TP Q AL AQ+ +LSL L + Sbjct: 181 EITRLIQTNIELIAVDQSAGSDVTGTTIARTVTVAATPEQVAALAQAQNTGRLSLALVGV 240 Query: 224 ADLNPSSSEDSD 235 D +S+ + D Sbjct: 241 HDETVASAIEVD 252 >gi|163733543|ref|ZP_02140986.1| pilus assembly domain protein [Roseobacter litoralis Och 149] gi|161393331|gb|EDQ17657.1| pilus assembly domain protein [Roseobacter litoralis Och 149] Length = 276 Score = 190 bits (484), Expect = 1e-46, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 95/234 (40%), Gaps = 6/234 (2%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPN 64 M ++ A A +A + + + A V ++ L G + P Sbjct: 1 MVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMQSAIVPTQPVFVATRHLRYGDTLNPE 60 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSS 123 + V +P + DG D+ + L+ P+ + + K+ + G + GL++ Sbjct: 61 DVRAVNWPTNAIPDGIFTDIAVLFPEGTDEPRLIIRPMEPNEALLAVKITEPGEDIGLTT 120 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIAID 180 L KG RA + + +++ V G ++P D VDV ++ + R+ ++ S +R+IA+D Sbjct: 121 RLEKGMRAFAIRVDVATGVSGFLRPGDKVDVYWTGGVQTSNGREDVTKLIQSAVRLIAVD 180 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 D + T T+ +P Q AL AQS LSL L D Sbjct: 181 QTEDQMNGARIARTVTVAASPEQVAALAQAQSTGNLSLSLVGAGDDAELDEIKV 234 >gi|269966891|ref|ZP_06180964.1| putative pilus assembly protein [Vibrio alginolyticus 40B] gi|269828558|gb|EEZ82819.1| putative pilus assembly protein [Vibrio alginolyticus 40B] Length = 251 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 +M +++S VF L A +IA + + + T E+ + VL++ +L G +++ Sbjct: 7 IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTILSEKH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124 L + + D ++ G +V I G+ + +L G G L++L Sbjct: 64 LSTKLMEVDWI------DDETLKVKEQALGRIVANTIYAGELVNPHRLALPGEGATLAAL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDHNI 183 +P+ KRA T+ ++ V G + P + VDV+ S + K T VL NI V+A+D Sbjct: 118 IPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQTA 177 Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + D + ++ TLE+TP +A+ L++A S + L LR+ P + V Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN-----PHEVDKPVVARKYTP 232 Query: 243 GKEIQIIKAG 252 + IIK Sbjct: 233 RPSVTIIKGS 242 >gi|167574002|ref|ZP_02366876.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis C6786] Length = 282 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+ +G + PN L V +P +V G DV + Sbjct: 24 ASRWLVQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KS 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE+TP QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + ++ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALNTGGA 225 >gi|110679398|ref|YP_682405.1| pilus assembly domain-containing protein [Roseobacter denitrificans OCh 114] gi|109455514|gb|ABG31719.1| pilus assembly domain protein [Roseobacter denitrificans OCh 114] Length = 282 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 6/240 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58 M++ M ++ A A +A + + + + A V ++ L G Sbjct: 1 MRVIFGMVLLAGVALAGGAVYMAKGYIGQYQAELARAQQMHSAIVPTQQVFVATRHLRYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 + P + V +P + G D+ + L+ P+ + + K+ + G Sbjct: 61 DTLKPEDVRAVNWPVNAIPQGVFTDIAALFPEGTDEPRLIIRPMEPSEAVLAVKITEPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNI 174 + GL++ L KG RA + + ++S V G ++P D VDV ++ + R+ ++ + + Sbjct: 121 DIGLTTRLEKGMRAFAIRVDVASGVSGFLRPGDKVDVYWTGGVQTGNGREDVTKLIQTAV 180 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 R+IA+D D + T T+ TP Q AL AQS LSL L + D Sbjct: 181 RLIAVDQIDDQMNGARIARTVTVAATPEQVAALAQAQSTGNLSLSLVGVGDDEELDEIKV 240 >gi|145219385|ref|YP_001130094.1| SAF domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205549|gb|ABP36592.1| SAF domain protein [Chlorobium phaeovibrioides DSM 265] Length = 262 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 61/239 (25%), Positives = 115/239 (48%), Gaps = 19/239 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + ++ + +A A R V+ V+I + +G +T Sbjct: 1 MKKPIIAAIALILGAMAAFTAARWVNISRHTGP-----------KVVIVAQPIELGKAIT 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 ++ V +P ++ G + E+ G + RV ++ G+P+ KL +G GGL Sbjct: 50 TEQIKTVNWPGADIPQGAVSKA------TEVVGRIARVSMMPGEPVLPGKLAPKGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S++ GKRA T+ ++ AV G P VD+++ + R+P VLS ++V+A+ Sbjct: 104 ASIISDGKRAITVKVNEVIAVAGFALPGSFVDILVSGKDANRQPFSRTVLSRVKVLAVAQ 163 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ ++ V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGALSLVLRNELDTGEVNSAGVRLSDL 222 >gi|83717368|ref|YP_440455.1| pilus assembly protein [Burkholderia thailandensis E264] gi|167617228|ref|ZP_02385859.1| pilus assembly protein [Burkholderia thailandensis Bt4] gi|257141103|ref|ZP_05589365.1| pilus assembly protein [Burkholderia thailandensis E264] gi|83651193|gb|ABC35257.1| pilus assembly protein [Burkholderia thailandensis E264] Length = 279 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+ +G + PN L V +P +V G D ++ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKS 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE+TP QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + ++E + Sbjct: 198 LDLARSVGTLSLVLRNQVDKSALTTEGA 225 >gi|167579113|ref|ZP_02371987.1| pilus assembly protein [Burkholderia thailandensis TXDOH] Length = 279 Score = 190 bits (483), Expect = 2e-46, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 106/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+ +G + PN L V +P +V G D ++ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVNLGEPLGPNQLRIVNWPTASVPPGAFTD------LKS 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGDRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE+TP QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + ++E + Sbjct: 198 LDLARSVGTLSLVLRNQVDKSALTTEGA 225 >gi|167725246|ref|ZP_02408482.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei DM98] Length = 245 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225 >gi|113866745|ref|YP_725234.1| flp pilus assembly protein [Ralstonia eutropha H16] gi|113525521|emb|CAJ91866.1| flp pilus assembly protein [Ralstonia eutropha H16] Length = 280 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 69/252 (27%), Positives = 123/252 (48%), Gaps = 23/252 (9%) Query: 1 MKLTR-LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK TR ++ ++++ V + A + A R + + + + DL +G Sbjct: 1 MKNTRAILMLLIALVAGVAAVVSASRWLVQQSSSSVRQVVV----------AANDLNLGQ 50 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + + L V++P +V G +D M+ L+G +VR + +G+P+ KL G Sbjct: 51 PLNGSQLRMVSWPTGSVPPGAFED------MKALEGRVVRTSLQRGEPVLDAKLAPVGTK 104 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNI 174 GGLS+++ GKRA T+ ++ V G P ++VDV++ + + +VL I Sbjct: 105 GGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEEAKTTQSGSISKIVLEKI 164 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ + D+ + V + TLE+TP QA+ L A+SV LSLVLR+ D+ S+ Sbjct: 165 LVLAVAQQVSRDDTQPKVVNAVTLEVTPEQAEKLDVARSVGTLSLVLRNQLDVADISTGG 224 Query: 234 SDVWDVQEEGKE 245 + + + E Sbjct: 225 ATKGTLLGKTPE 236 >gi|212635454|ref|YP_002311979.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] gi|212556938|gb|ACJ29392.1| Flp pilus assembly protein CpaB [Shewanella piezotolerans WP3] Length = 267 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 61/229 (26%), Positives = 110/229 (48%), Gaps = 16/229 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L+ +V+S VF + A +A + + E + V+ ++ +G + Sbjct: 1 MNNKTLLFVVLSLVFGVTAVYLAQNWLKSNTKD------EVISTTGTVITMATEVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L PE + G + D + E +G +V+ + G+ +R E+L +G G Sbjct: 55 LQRKHLSLTTLPESLIPKGAVLD------LAEAEGKVVKQKLYAGEVLRAERLTAKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VD++ + S K +VLSN++++AI Sbjct: 109 TLASLITPTMRAVTIRVNDVVGVAGFLLPGNRVDIINIFKSSGLK--TDIVLSNVKILAI 166 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 D +DE + ++ TLEL+ QA+ L+ A+S L L LR+ D Sbjct: 167 DQRASNDENKPVLVRAVTLELSLDQAEILMIAKSRGSLQLALRNPNDKA 215 >gi|221067359|ref|ZP_03543464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220712382|gb|EED67750.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 281 Score = 189 bits (481), Expect = 3e-46, Method: Composition-based stats. Identities = 65/208 (31%), Positives = 109/208 (52%), Gaps = 14/208 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G + PN+L V +P ++ DG D MQ+L +V+V +L+G+ Sbjct: 38 KVVVAATDIPLGGKILPNMLNTVDWPRGSIPDGAFHD------MQQLQDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RS 159 + KL G GGL++++ GKRA T+ ++ V G P ++VDVV+ Sbjct: 92 AVLEGKLAPVGTKGGLAAVIAPGKRAMTVRVNDVVGVAGFALPGNYVDVVVNAQQEQAGK 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + + + VL N+ V+A+ D DE + V S TLEL+P A+ L A+SV LSL Sbjct: 152 MEDSRQISKTVLENVLVLAVAQEADRDETKPKVVSAVTLELSPGDAEKLDLARSVGNLSL 211 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEI 246 VLR+ D +P+S+ + + + Sbjct: 212 VLRNQIDKDPTSTVGITKHQLFGTPEPV 239 >gi|254229331|ref|ZP_04922748.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262393416|ref|YP_003285270.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] gi|151938139|gb|EDN56980.1| Flp pilus assembly protein CpaB [Vibrio sp. Ex25] gi|262337010|gb|ACY50805.1| flp pilus assembly protein RcpC/CpaB [Vibrio sp. Ex25] Length = 251 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 64/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 +M +++S VF L A +IA + + + T E+ + VL++ +L G +++ Sbjct: 7 IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVLVAAMELEPGTILSEKH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124 L + + D ++ G +V I G+ + +L G G L++L Sbjct: 64 LSTKLMEVDWI------DDETLKVQEQALGRIVANTIYAGELVNSNRLALPGEGATLAAL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAIDHNI 183 +P+ KRA T+ ++ V G + P + VDV+ S + K T VL NI V+A+D Sbjct: 118 IPENKRAITIRVNDVIGVAGFLLPGNKVDVLNTVSYGQGKNATTKTVLKNINVLAVDQTA 177 Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + D + ++ TLE+TP +A+ L++A S + L LR+ P + V Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGDIQLALRN-----PHEVDKPVVARKYTP 232 Query: 243 GKEIQIIKAG 252 + IIK Sbjct: 233 RPSVTIIKGS 242 >gi|269962016|ref|ZP_06176371.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] gi|269833339|gb|EEZ87443.1| hypothetical protein VME_27550 [Vibrio harveyi 1DA3] Length = 251 Score = 189 bits (480), Expect = 4e-46, Method: Composition-based stats. Identities = 66/258 (25%), Positives = 117/258 (45%), Gaps = 17/258 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K +M +++S VF L A +IA + + + T E+ + VL++ +L GMV+ Sbjct: 3 KTQVVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEIERHPVLVAAMELEPGMVL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 L + + + + Q G +V I G+ + +L G G Sbjct: 60 EEKHLTTKLMEVDWIEEDTLKVSEQA------LGRIVANTIYSGEMVNPNRLALPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VD++ S + K + VL NI+V+A+ Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173 Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D + D + ++ TLE+TP +A+ L++ S K+ L LR+ P + V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN-----PHEVDKPPVAR 228 Query: 239 VQEEGKEIQIIKAGVIVN 256 + IIK N Sbjct: 229 KYTPRPSVTIIKGSQASN 246 >gi|296444396|ref|ZP_06886361.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] gi|296258043|gb|EFH05105.1| Flp pilus assembly protein CpaB [Methylosinus trichosporium OB3b] Length = 264 Score = 188 bits (479), Expect = 4e-46, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 124/259 (47%), Gaps = 16/259 (6%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEE---VITENPAKFINVLISKGDLAVGMVVTPNIL 66 + A+VAG A ++S + V P VL++ DL G + Sbjct: 6 IAVLGVAIVAGGGAFMMLSTEPTPPQPMHLVAPPPPRTTDQVLVAARDLPFGAALAEADT 65 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLL 125 W+ +P V G + P ++++G VR P+ G+PIR E+L+ GL S+++ Sbjct: 66 SWIEWPISAVPPGVLRKSEAPEIKKDIEGAFVRTPLANGEPIRRERLIKGQTPGLMSTMI 125 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAI 179 G+RA +D+S ++ GG I PNDHVDV+ + ++ V+L N+RV+A+ Sbjct: 126 SAGRRAVAIDVSPNTTAGGFILPNDHVDVIRLYRDPDQGGQIGSDMNSEVILRNVRVLAM 185 Query: 180 DH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + E + G+TATL+L P QA+ ++ AQ +L+L+LR IAD + D Sbjct: 186 GPVFQTKNGESSVTGATATLDLEPRQAELVILAQRSGQLALMLRPIAD----ALADEKPE 241 Query: 238 DVQEEGKEIQIIKAGVIVN 256 + I++ GV Sbjct: 242 SAAPGQDPLTIVRFGVTST 260 >gi|167821373|ref|ZP_02453053.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 91] Length = 251 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225 >gi|153834044|ref|ZP_01986711.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] gi|148869599|gb|EDL68589.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] Length = 251 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 63/258 (24%), Positives = 117/258 (45%), Gaps = 17/258 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K +M +++S VF L A +IA + + + T E+ + VL++ +L G ++ Sbjct: 3 KTQIVMLLLLSIVFGLAAVLIAKQWIDGQNQPTVEL---EEVERHPVLVAAMELEPGTIL 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 L + + + + ++ G +V I G+ + +L G G Sbjct: 60 EEKHLTTKLMEVDWIEESTLK------VSEQALGRIVANTIYSGEMVNPNRLALPGEGAT 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179 L++L+P+ KRA T+ ++ V G + P + VD++ S + K + VL NI+V+A+ Sbjct: 114 LAALIPENKRAITIRVNDVIGVAGFLLPGNKVDILNTISSGKGKSASTKTVLKNIKVLAV 173 Query: 180 DHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D + D + ++ TLE+TP +A+ L++ S K+ L LR+ P + V Sbjct: 174 DQTAKTNDNKPVIVRAVTLEVTPKEAEKLLSENSKGKIQLALRN-----PHEVDKPVVAR 228 Query: 239 VQEEGKEIQIIKAGVIVN 256 + IIK N Sbjct: 229 RYTPRPSVTIIKGSQASN 246 >gi|260776716|ref|ZP_05885611.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260607939|gb|EEX34204.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 247 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 109/248 (43%), Gaps = 19/248 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ ++S F L A A + + EV + + ++ G V+ Sbjct: 7 ILLFLLSIAFGLGAVFFAKQWMDRQLQPQTEVEVVEREPVVV---AAQEIPAGSVIGEQH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124 L + + D Q + +EL G +V I G+ I +L G G L++L Sbjct: 64 LT------SKLLEKDWRDEFQFTSSEELIGQVVATSIFPGEIINQNRLTVPGEGSTLAAL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +P+ KRA T+ ++ V G + P + VD++ SE + + VL +I+V+A+D Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDILSTVKYSETSASTSTVLKDIKVLAVDQTAR 177 Query: 185 S-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 + D + ++ TLE+TP QA+ L+ A+S ++ L LR+ + + + Sbjct: 178 TKDNKPIIVRAVTLEVTPRQAEKLLTARSKGEIQLTLRNP--------HEEEKAVKRYVA 229 Query: 244 KEIQIIKA 251 + IIK Sbjct: 230 PSVTIIKG 237 >gi|167566933|ref|ZP_02359849.1| putative pilus assembly protein CpaB [Burkholderia oklahomensis EO147] Length = 274 Score = 188 bits (479), Expect = 5e-46, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+ +G + PN L V +P +V G DV + Sbjct: 16 ASRWLVQTSSSAVTPVAVAAIDVNLGEPLVPNQLRVVNWPTASVPPGAFTDV------KS 69 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 70 LEGRVVRTSLARGEPVLGSKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 129 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE+TP QA+ Sbjct: 130 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVTPDQAEK 189 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + ++ + Sbjct: 190 LDLARSVGTLSLVLRNQVDKDALNTGGA 217 >gi|167851181|ref|ZP_02476689.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei B7210] Length = 253 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 59/208 (28%), Positives = 105/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G +VR + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVVRTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDTLSTGGA 225 >gi|149911410|ref|ZP_01900028.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149805518|gb|EDM65523.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 264 Score = 188 bits (478), Expect = 6e-46, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 107/232 (46%), Gaps = 15/232 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + +S +F + A +IA + + P + + S + +G + Sbjct: 1 MNKKTVISVAISIMFGIGAILIAQSWLDTNKPSA-------PENQVYIAFSTMVIPIGTI 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ PE D + D E+ G++ + I D IRLE+L+ +G G Sbjct: 54 IEAKHIKLKILPESMSPDNTVTDP------DEIYGMIAKDTIYIDDIIRLERLLIKGQGS 107 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ + RA ++ + V G + P + +D++ S + + V+L NI+++AI Sbjct: 108 TLASLISENMRAVSIRVDDVVGVAGFLLPGNRIDILNTVSGNGGATSTEVILHNIKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D DE + + T+E+ QA+ L+ A++ +L L LR+ D + Sbjct: 168 DQRAAIDENKPQLVRAITVEVNLEQAEILMTARNQGRLQLALRNPTDSHAVD 219 >gi|193213116|ref|YP_001999069.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] gi|193086593|gb|ACF11869.1| Flp pilus assembly protein CpaB [Chlorobaculum parvum NCIB 8327] Length = 263 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 65/239 (27%), Positives = 119/239 (49%), Gaps = 18/239 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + I ++ V +A IA R+ + +E V+I + G V+ Sbjct: 1 MKKPVIIAIALVLGAMAAYIAARMSTVQTDGSE----------AKVVIVAMPIDAGKVIA 50 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGL 121 P+ ++ V +P V ++ G + RV ++ G+P+ +KL +G GGL Sbjct: 51 PDQIKAVQWPSSAVPLNAFARTA------DVVGRVARVSMIAGEPVLPDKLALKGAKGGL 104 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S LP+GKRA T+ ++ AV G P +VD+++ R+ VLS ++V+A+D Sbjct: 105 ASTLPEGKRAITVKVNEVIAVAGFALPGSYVDILVNGKDDNRRSFSRTVLSRVKVLAVDQ 164 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D ++ + + T+EL+P +A+ L A+++ LSLVLR+ D +SE + D+ Sbjct: 165 VTTGDPDKPKLVNAVTVELSPREAEKLDLARNIGNLSLVLRNELDTAEVNSEGVRLPDI 223 >gi|84387246|ref|ZP_00990267.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84377893|gb|EAP94755.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 249 Score = 188 bits (478), Expect = 7e-46, Method: Composition-based stats. Identities = 59/257 (22%), Positives = 109/257 (42%), Gaps = 17/257 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + ++S VF L A A + + T EV T + V+++ ++ G ++ Sbjct: 3 KSQVFLLFLLSVVFGLAAVFFAKQWMDDQVQPTVEVET---VERRPVVVASQEIEAGTII 59 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 L + + + D +L G +V I G+ + + G G Sbjct: 60 EDQFLTTRLMEVDWINENNYSDKA------DLIGKVVANTIYAGEVLHKLRFTVPGEGST 113 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L++L+P+ KRA T+ + V G + P + VD++ S + VL +I+V+A+D Sbjct: 114 LAALIPENKRAVTIRVDDVIGVAGFLLPGNKVDILNTISYGKNSAATQTVLKDIKVLAVD 173 Query: 181 HNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + E ++ TLE+TP +A+ L+ A+S + L LR+ ++ + V Sbjct: 174 QTAKTKENSPIIVRAVTLEMTPKEAEKLLTAKSKGSIQLTLRNPHEV------EKKVVRR 227 Query: 240 QEEGKEIQIIKAGVIVN 256 + IIK N Sbjct: 228 YVPRPSVTIIKGTETSN 244 >gi|94309593|ref|YP_582803.1| Flp pilus assembly CpaB [Cupriavidus metallidurans CH34] gi|93353445|gb|ABF07534.1| Flp pilus assembly CpaB precursor [Cupriavidus metallidurans CH34] Length = 281 Score = 188 bits (477), Expect = 8e-46, Method: Composition-based stats. Identities = 59/190 (31%), Positives = 101/190 (53%), Gaps = 12/190 (6%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL +G + + L+ V++P +V G +D + LDG +VR + +G+PI Sbjct: 42 AANDLDLGQPLNGSQLKLVSWPAGSVPPGAFEDP------KTLDGRVVRTSLQRGEPIID 95 Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKP 165 KL G GGLS+++ GKRA T+ ++ V G P ++VDV++ + + Sbjct: 96 AKLAPVGTKGGLSAVINDGKRAITVRVNDVVGVAGFALPGNYVDVIVNTNEDTKSAQNGS 155 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +VL I V+A+ + D+ + V + TLE++P QA+ L A+SV LSLVLR+ Sbjct: 156 ISKIVLEKILVLAVAQQVSRDDTQPKVVNAVTLEVSPDQAEKLDVARSVGTLSLVLRNQM 215 Query: 225 DLNPSSSEDS 234 D+ ++ + Sbjct: 216 DVADINTGGA 225 >gi|150377241|ref|YP_001313836.1| SAF domain-containing protein [Sinorhizobium medicae WSM419] gi|150031788|gb|ABR63903.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 263 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 80/240 (33%), Positives = 123/240 (51%), Gaps = 11/240 (4%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ ++++ A +A + + EV A VL++ +L G + Sbjct: 1 MIRIVILLLALASGGAASWLA---LGMGDEPSVEVAEVEEAPAQEVLVAAAELKRGAAIE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 N L W + E + FI + +A EL G L + G+PIR +KL RG G LS Sbjct: 58 ENHLRWQPW-EGEIPPVFISRSSRADATTELKGSLALSDFVAGEPIREDKLAQRGTGYLS 116 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVI 177 SLLP GKRA + ++ S GG I PNDHVDVV + K +LSNIRV+ Sbjct: 117 SLLPSGKRAIAVRVTAESTAGGFILPNDHVDVVHTAVRPDAAGDAGKVVSRAILSNIRVL 176 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D + D ++G TATLE+ P Q A+ AA++ +SL LR+I+D + +S +++ Sbjct: 177 AVDQTVSQAADGTSVIGKTATLEVNPEQIAAVAAAEASGTVSLALRAISDNHEASVVEAE 236 >gi|114705457|ref|ZP_01438365.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] gi|114540242|gb|EAU43362.1| pilus assembly protein cpaB [Fulvimarina pelagi HTCC2506] Length = 282 Score = 188 bits (477), Expect = 9e-46, Method: Composition-based stats. Identities = 94/267 (35%), Positives = 152/267 (56%), Gaps = 14/267 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT---EEVITENPAKFINVLISKGDLAV 57 M ++++ + V+ + A+ AG++A+++ +P + + P K +VLIS GD+ + Sbjct: 10 MNRSQIIVVGVAALAAIGAGLLALKVSTPSQQEPVIITAAPAQPPVKLEDVLISSGDVPM 69 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 GM N L W +P + + +GFI +P A+ EL+G + R G+P+R KL+ Sbjct: 70 GMRFD-NGLSWQKWPVDGIGEGFILKNDRPEAIDELNGSIARQAFFAGEPVRSSKLIQSD 128 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLS 172 +G +S+LLP GKRA + I+ ++A GG I PNDHVDV+M R + VL Sbjct: 129 SGFMSALLPAGKRAVAVQIAAATAAGGFILPNDHVDVIMTRRVEGDGGANAKILTETVLR 188 Query: 173 NIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPS 229 N+RV+AID I+ +R +VGS ATLE+ QA+AL AAQ +A + L LRS+AD P Sbjct: 189 NLRVLAIDQTIEDAEGQRNVVGSVATLEVDGEQAEALTAAQQIADRFVLSLRSLADSIPG 248 Query: 230 SSEDSDVWDVQEEGKE--IQIIKAGVI 254 S + +E+ + ++I++ G + Sbjct: 249 SPGYAAFLLAEEKARRGPVRIVRYGKV 275 >gi|28899194|ref|NP_798799.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|153836767|ref|ZP_01989434.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|260361568|ref|ZP_05774595.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|260876725|ref|ZP_05889080.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|260898196|ref|ZP_05906692.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|260900396|ref|ZP_05908791.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|28807418|dbj|BAC60683.1| putative pilus assembly protein [Vibrio parahaemolyticus RIMD 2210633] gi|149749913|gb|EDM60658.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ3810] gi|308089099|gb|EFO38794.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus Peru-466] gi|308091466|gb|EFO41161.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AN-5034] gi|308109142|gb|EFO46682.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus AQ4037] gi|308114026|gb|EFO51566.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus K5030] gi|328474269|gb|EGF45074.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 10329] Length = 251 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 63/250 (25%), Positives = 114/250 (45%), Gaps = 17/250 (6%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 +M +++S VF L A +IA + + + T E+ + V+++ +L G ++ Sbjct: 7 IMLLLLSIVFGLAAVLIAKQWMDGRNQPTVEL---EEVERHPVVVATMELEPGTILDEKH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124 L + + D ++ G +V I G+ + +L G G L++L Sbjct: 64 LTTKLMEVDWI------DDETLKVPEQALGRIVANTIYAGELVNPNRLAQPGEGATLAAL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAIDHNI 183 +P+ KRA T+ ++ V G + P + VDV+ S + K T VL NI V+A+D Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDVLSTVSYGKGKQATTLTVLKNINVLAVDQTA 177 Query: 184 DS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + D + ++ TLE+TP +A+ L++A S ++ L LR+ P + V Sbjct: 178 KTNDNKPVIVRAVTLEVTPKEAEKLLSANSKGEIQLALRN-----PHEVDKPVVAKKYTP 232 Query: 243 GKEIQIIKAG 252 + IIK Sbjct: 233 RPSVTIIKGS 242 >gi|163751743|ref|ZP_02158961.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] gi|161328395|gb|EDP99554.1| hypothetical Flp pilus assembly protein [Shewanella benthica KT99] Length = 270 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 57/250 (22%), Positives = 117/250 (46%), Gaps = 20/250 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S VF +VA +A + + + V+ + +G + Sbjct: 1 MNNKTMLFVLLSLVFGVVAVFLAQSWLESNSE------ADGLEATSTVITMATLVPLGAI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L+ P + + I +E +G++V+ + G+ +R E+++ +G G Sbjct: 55 LERKHLKLTPMPNSVIPEAAIKT------FEEAEGMVVKHNLYSGEILRSERIIKKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + +VL+NI+++AI Sbjct: 109 TLASLISPNMRAVTIRVNDVIGVAGFLLPGNRVDVLNLFKKDGSLH-TDIVLANIKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLE++ QA+ L+ A+ KL L LR+ D S + ++ Sbjct: 168 DQRSSNDENKPTLVRAVTLEMSLEQAETLLIAKGRGKLQLALRNPND-----SAEVELAL 222 Query: 239 VQEEGKEIQI 248 + E+ + +I Sbjct: 223 INEKQQREEI 232 >gi|56697918|ref|YP_168289.1| CpaB family protein [Ruegeria pomeroyi DSS-3] gi|56679655|gb|AAV96321.1| CpaB family protein [Ruegeria pomeroyi DSS-3] Length = 305 Score = 187 bits (476), Expect = 1e-45, Method: Composition-based stats. Identities = 58/257 (22%), Positives = 105/257 (40%), Gaps = 14/257 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMR----LVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 K+ + G+V+ AL G + M + + E V ++ L Sbjct: 17 KMRAVFGLVLIVGIALAGGAVMMARNYISAYQNELARERQARAQIVPTKTVYVASRPLRY 76 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G +T + V +PE + +G D ++ + V + K + I K+ G Sbjct: 77 GERLTKEDVRAVNWPENAIPEGTFLDAAMLFPERQEENRYVLRAMEKDEAIMAIKVTKPG 136 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVT 168 + GL+S L +G RA + + ++S V G ++P D VDV LS + Sbjct: 137 EDAGLTSQLARGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGGLSGATGPLEGMQGEITR 196 Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ +NI+++AID D + T T+ P Q +L AQ+ +L+L L D Sbjct: 197 LIQTNIQIVAIDQISGGDVTGANIARTVTVAALPQQVASLAQAQTTGRLTLALVGADDDT 256 Query: 228 PSSSEDSDVWDVQEEGK 244 +++ + D + G Sbjct: 257 IAAAVEVDQRMLLGLGA 273 >gi|167908128|ref|ZP_02495333.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 256 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 58/208 (27%), Positives = 104/208 (50%), Gaps = 12/208 (5%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + ++ + + V ++ D+++G + PN L V +P +V G D+ Sbjct: 24 ASRWLVQTSSSAVTPVAVAATDVSLGEPLGPNQLRIVNWPTASVPPGAFTDLKP------ 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 L+G + R + +G+P+ KL G GGLS+++ G RA T+ ++ V G P ++ Sbjct: 78 LEGRVARTSLARGEPVLGTKLAPVGTKGGLSAVIAPGHRAITVRVNDVVGVAGFALPGNY 137 Query: 152 VDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKA 206 VDV++ ++ +VL I V+A+ + D+ V + TLE++P QA+ Sbjct: 138 VDVIVNTQEQSKADPQQSISKIVLEKILVLAVAQQVSRDDTAPKVVNAVTLEVSPEQAEK 197 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDS 234 L A+SV LSLVLR+ D + S+ + Sbjct: 198 LDLARSVGTLSLVLRNQVDKDALSTGGA 225 >gi|239908022|ref|YP_002954763.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] gi|239797888|dbj|BAH76877.1| Flp pilus assembly CpaB domain protein [Desulfovibrio magneticus RS-1] Length = 300 Score = 187 bits (475), Expect = 2e-45, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 112/252 (44%), Gaps = 18/252 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + I+++ + AL AG++ +R + E + A + V+++ + G Sbjct: 1 MKTKAVPHIILAVILALTAGVLTIRWLGSVRAPKVE-QAKPAAPKVEVVVAARAIPKGGR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + ++++ F E G + DV QE G + I DPI +KL+ +G + Sbjct: 60 LDASMVKSKGFEAEAAPQGALRDV------QEAYGRISARDISPDDPITPDKLMPKGATS 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIR 175 GGL + + GKRA T+ S GG+I P VDV++ + K ++L N+ Sbjct: 114 GGLDASVAPGKRAFTIKGSKIMGSGGLITPGCRVDVLVTYPVPNGKNDEKINKIILENVP 173 Query: 176 VIAIDHN----IDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 ++ I D R + +T TL + P +A+ L A L L LR+ D + Sbjct: 174 ILTTGTERETKIGKDGREELANTDFYTLMVAPEEAERLALASDTGSLHLALRTPGDADIV 233 Query: 230 SSEDSDVWDVQE 241 ++ +DV E Sbjct: 234 TTSGADVAKSLE 245 >gi|323491531|ref|ZP_08096710.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323314107|gb|EGA67192.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 247 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 11/224 (4%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ ++S F L A A + + EV + I+ ++ G V+ Sbjct: 7 ILLFLLSIAFGLGAVFFAKQWMDNQLQPQTEVEVVEREPVV---IAAQEIPAGTVIEEQH 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSL 124 + + + Q A ++L G +V + G+ + + +L ++G G L+SL Sbjct: 64 IT------NKLLEKAWRSESQFTASEDLIGQVVASNVYPGEILHISRLANQGEGSTLASL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +P+ KRA T+ ++ V G + P + VDV+ + VL I+V+A+D Sbjct: 118 IPENKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIKYGKNSANTVTVLKEIKVLAVDQTAR 177 Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 + E + ++ TLE++P QA+ L++AQS + L LR+ + Sbjct: 178 TKENKPIIVRAVTLEVSPRQAEKLLSAQSRGDIQLALRNPHEEE 221 >gi|99082185|ref|YP_614339.1| Flp pilus assembly CpaB [Ruegeria sp. TM1040] gi|99038465|gb|ABF65077.1| pilus assembly protein [Ruegeria sp. TM1040] Length = 287 Score = 187 bits (474), Expect = 2e-45, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 107/254 (42%), Gaps = 11/254 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A + H + E + +NV ++ L G Sbjct: 1 MRAAFGLVLIVGVALAGGAVMMAKNYIEAYQHALAQERSNRDAAVPTVNVFVANKTLTYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQ-PNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +T + VA+PE + +G + + + D V + K +P+ K+ G Sbjct: 61 EELTKESVRSVAWPENALPEGVFHEEAELFPSDSPKDARFVLRTMEKNEPLLAVKVTAPG 120 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------KPTVTVV 170 + G++S L KG RA + + ++S V G ++P D VDV R ++ Sbjct: 121 EDAGITSRLEKGMRAFAIRVDVASGVSGFLRPGDRVDVYWSGQPPARGGQELGGEVTRLI 180 Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 SNI +IA+D D ++ T T++ P + L AQ+ +LSL L D + Sbjct: 181 QSNIELIAVDQMSGGDFSSAIIARTVTVKAQPEEVARLAQAQATGRLSLALVGAQDDTIA 240 Query: 230 SSEDSDVWDVQEEG 243 S + D + G Sbjct: 241 SLVEVDQRALFGLG 254 >gi|218887828|ref|YP_002437149.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758782|gb|ACL09681.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 274 Score = 186 bits (473), Expect = 2e-45, Method: Composition-based stats. Identities = 58/245 (23%), Positives = 111/245 (45%), Gaps = 17/245 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + L+ I ++ V ALVAG++ R + + ++ + + + ++ D+ G Sbjct: 1 MRASSLIQISLALVLALVAGVLVFRFMQVNRAAAPQMAA---PEQVELAVAAADVPRGAK 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 + ++ F + + G P G ++ + G+PI +L+ G Sbjct: 58 LAAEQIKLAPFLKSSAPSGAFTKDTLP------VGRVLSSAVAAGEPITEARLLQDGASH 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175 GG+S+L+ G RA + + + G I+P + VDV++ R+ + +VL N+R Sbjct: 112 GGVSTLIAPGMRAVAVKGNKVLGLSGFIRPGNRVDVLVTLDDETREKSKSRTKLVLENVR 171 Query: 176 VIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + + S+ TLE++P QA+ L A S +L LR+ AD + Sbjct: 172 VLATGTELKQEGDDTSTSSVDVYTLEISPPQAEPLALAASRGELHFALRNPADDGTVLTP 231 Query: 233 DSDVW 237 +DV Sbjct: 232 GTDVP 236 >gi|163742212|ref|ZP_02149600.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] gi|161384542|gb|EDQ08923.1| CpaB family protein [Phaeobacter gallaeciensis 2.10] Length = 266 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 58/220 (26%), Positives = 96/220 (43%), Gaps = 8/220 (3%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + + E ++V I+ L G +T + V +PE + +G Sbjct: 6 YITAYQNELARERASRGENIPLVDVFIANTQLKYGERLTKEHIRSVRWPENAIPEGAFLT 65 Query: 84 VHQPNAMQELDG-VLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSA 141 + Q D +V + K + I K+ G + G++S L KG RA + + +SS Sbjct: 66 MDALFPPQYPDDHRVVLRRMEKDEAILAVKVTKPGEDAGITSRLSKGMRAFAIRVDVSSG 125 Query: 142 VGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTA 195 V G ++P DHVDV SL+++ ++ +NI +IA+D D + ++ T Sbjct: 126 VSGFLRPGDHVDVYWTGSLNDQNGGRNGEFTRLIQTNIELIAVDQTAGGDLDGAVIARTV 185 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 T + P Q AL AQS +LSL L D +S + D Sbjct: 186 TAAVRPEQVAALAQAQSTGRLSLSLVGAGDDTVASVIEVD 225 >gi|89053489|ref|YP_508940.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] gi|88863038|gb|ABD53915.1| Flp pilus assembly CpaB [Jannaschia sp. CCS1] Length = 274 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 3/250 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ ++ + V A A IA + E + + +++ L G Sbjct: 1 MRIVFILVLAVGVGLAGFAVSIAKDRFDQYQTALAE-QRDAILPTVELIVVSRQLRYGEQ 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 +TP+ ++ + +P E+V G + + E V + + +PI L K+ G + Sbjct: 60 ITPDDVQLIRWPAEHVPFGAFTTMDELFPPDEEGARTVLRMMEQDEPILLVKVTAPGEDA 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 G++S L G RA + + ++S V G ++P D VDV ++ +N+++IAI Sbjct: 120 GVASRLEAGMRAIALRVDVNSGVSGFLRPGDRVDVYWTGPGRNGDTVTRLIRANVQLIAI 179 Query: 180 DHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D D + T T+ P AL AQ L+L L + D + Sbjct: 180 DQIADEQRNSPTIARTITVTARPEDVAALTQAQGSGSLTLALVGVGDETEQGEVEVSTSA 239 Query: 239 VQEEGKEIQI 248 + E +E+ + Sbjct: 240 LLGEIEEVAV 249 >gi|197118221|ref|YP_002138648.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197087581|gb|ACH38852.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 289 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 58/253 (22%), Positives = 117/253 (46%), Gaps = 18/253 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 +TR + + AL+ G +A + + + + + P + + + + DL +G + Sbjct: 1 MTRPSAMTTVTIIALLLGGLATIMANNYLKKQ----ADKPYEGVPIASAAVDLPLGSKLN 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-- 120 ++ +P++ + G D L G +V P+ G+ I KL+ + G Sbjct: 57 ATQVKLATWPKDALPAGGYQDYKP------LVGRIVVRPLSAGEVITENKLMPLNSSGGI 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLSNIRV 176 ++ ++P G RA T+ ++ + V G I PN VDV++ S +ER ++L N+ V Sbjct: 111 MTYMVPDGHRAVTVSVNEVAGVAGFITPNSRVDVLLTIPRPGSTNERDNISKIILQNVPV 170 Query: 177 IAIDHNIDSDE--RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A + E + V T TL++TP++A+ L+ L L+LR++ D+ ++ + Sbjct: 171 LATGQVTEQKEGGKPGVVPTVTLDVTPIEAEKLIVGTKKGSLQLLLRNVIDVASVDTKGA 230 Query: 235 DVWDVQEEGKEIQ 247 V + +Q Sbjct: 231 TVSRALGGTETLQ 243 >gi|254477805|ref|ZP_05091191.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] gi|214032048|gb|EEB72883.1| Flp pilus assembly protein CpaB [Ruegeria sp. R11] Length = 286 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 10/245 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A ++ + + E ++V I+ L G Sbjct: 1 MRAVFGLVLIVGIALAGGAVMMAKNYITAYQNALAEERASRGEVIPLVDVFIANEPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFI-DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +TP + V +P+ + +G E +V + K + I K+ G Sbjct: 61 ERLTPERVRAVRWPQNAIPEGAFLTAEELFPPQAEEKPRVVLRTMEKDEAILAIKVTKPG 120 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVL 171 + GL+S L +G RA + + +SS V G ++P D VDV + ++ ++ Sbjct: 121 EDAGLTSRLERGMRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRVDDQTSERSGDFTRLIQ 180 Query: 172 SNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +NI +IAID + SD + + T T+ P Q AL AQS +L+L L D +S Sbjct: 181 ANIELIAIDQSAGSDLDGATIARTVTVSARPEQVAALAQAQSTGRLTLSLVGAEDDTVAS 240 Query: 231 SEDSD 235 + D Sbjct: 241 VIEVD 245 >gi|78186672|ref|YP_374715.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166574|gb|ABB23672.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 266 Score = 186 bits (472), Expect = 3e-45, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 15/232 (6%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 ++ +A I R + V + + V+I+ + G + N L+ V Sbjct: 8 AIALTLGAMAAFITARWMG-------VVQSRSEVSGPTVVIAARAIDAGTAIAENQLKAV 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLPKG 128 +P V +G ++ G + RV ++ G+P+ KL +GGLSS++P G Sbjct: 61 QWPRSTVPEGASART------DDVAGRIARVSMIAGEPVLPGKLAPTNASGGLSSIIPDG 114 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD-E 187 KRA T+ ++ AV G P +VD+++ +ER+P VLS I+V+A+ ++ + Sbjct: 115 KRAITVKVNEVIAVAGFALPGSYVDILVSGRDAERQPFSRTVLSRIKVLAVAQETTAEPD 174 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ Sbjct: 175 KPKVVNAVTLELTPHESETLDLARSIGVLSLVLRNELDTGEINSAGVRLADI 226 >gi|94497253|ref|ZP_01303825.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] gi|94423358|gb|EAT08387.1| Flp pilus assembly CpaB [Sphingomonas sp. SKA58] Length = 337 Score = 185 bits (471), Expect = 4e-45, Method: Composition-based stats. Identities = 68/266 (25%), Positives = 124/266 (46%), Gaps = 19/266 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSTPSVNAANMPVEADQPHVLVAVKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P++ V + A L G ++R I G P+ LV G+ Sbjct: 61 ILDAESFRFQPWPKDLVEQAYYLRGQADPA--RLAGSVIRTAITAGQPLTQGSLVKPGDR 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D +D+V+ +S++ +L N Sbjct: 119 GFLAAALAPGMRAVTVPVSAQTSVAGFVFPGDRIDLVLTQSVAGGGDGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD--- 225 +RV+A D +D+ D + +V S TLE+TP A+ + AQ+V LS+ LRS+AD Sbjct: 179 LRVLATDQRMDALGPDGKPVVQTYSNVTLEVTPKIAEKIAVAQTVGSLSMSLRSMADTPS 238 Query: 226 --LNPSSSEDSDVWDVQEEGKEIQII 249 + D D+ + E I+ Sbjct: 239 DLDAAIAGADVDLPEGASPAAEKAIL 264 >gi|329890997|ref|ZP_08269340.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] gi|328846298|gb|EGF95862.1| flp pilus assembly protein CpaB [Brevundimonas diminuta ATCC 11568] Length = 310 Score = 185 bits (471), Expect = 5e-45, Method: Composition-based stats. Identities = 78/302 (25%), Positives = 127/302 (42%), Gaps = 50/302 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ I ++ + A+ ++ + S VL++ DL G Sbjct: 1 MKPAKIAVICIAALAAIGLALVVRAMGSSGQPTATATAAVETRPMAKVLVAARDLEPGRR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDD------------------------------------- 83 + L W +P + + FI D Sbjct: 61 LVDADLSWKDWPADELNPLFITDGPPPPSKAEGAAAENAAVEGAGDAKSTTVDKAMKAVA 120 Query: 84 -VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSA 141 ++ P A + G +VR PIL G+P+ K+V G+ G +++ L G RA + +++ +A Sbjct: 121 ELNTPGAKSDYIGAVVREPILAGEPLVARKIVRAGDSGYMAAYLEPGMRAMAIRVTVETA 180 Query: 142 VGGMIKPNDHVDVVMVR------SLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGS 193 GG I P D VDV++ R K + V+ N++V+AID + DE+ +VG+ Sbjct: 181 AGGFILPGDRVDVLLTREVKGSGDDGGTKYSAATVMRNVKVLAIDQSTRAAEDEQAVVGA 240 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS---SEDSDVWDVQEEGKEIQIIK 250 TATLELT A+ L A+S +LSLVLRS AD S G +++ + Sbjct: 241 TATLELTGRDAEVLALAKSEGELSLVLRSYADTAGPSGHVPGAVRGRATGGGGSVVRVYR 300 Query: 251 AG 252 G Sbjct: 301 EG 302 >gi|283852072|ref|ZP_06369346.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] gi|283572462|gb|EFC20448.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. FW1012B] Length = 300 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 64/252 (25%), Positives = 110/252 (43%), Gaps = 16/252 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++++ + ALVAG++ +R + E K I VL++ LA G Sbjct: 1 MKSKAIPHMILAVILALVAGVLTIRWLGSVRGTGEPGKPAAETKKIEVLVAARPLAKGAR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 + ++ + E G + D E+ G + I + DPI +KL+ +G Sbjct: 61 LDTTMVRLKPYDPEAAPLGAMRDAS------EVVGRVTAREISQDDPITPDKLLPKGAAG 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRV 176 GGL + + GKRA T+ + GG+I P VDV+ + + V+L NI V Sbjct: 115 GGLDASVEPGKRALTVKGTKVMGSGGLITPGCRVDVLSTYNQPGKADEKVTKVILENIPV 174 Query: 177 IAIDH----NIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + + D R + +T TL +TP +A+ L A + + L LR D + + Sbjct: 175 LTTGTEREVRVGQDGREELANTDFFTLMVTPEEAERLALASDLGNMHLALRKPGDDDVVA 234 Query: 231 SEDSDVWDVQEE 242 + +DV + Sbjct: 235 TAGADVARSLDA 246 >gi|114799072|ref|YP_761692.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114739246|gb|ABI77371.1| pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 281 Score = 185 bits (470), Expect = 5e-45, Method: Composition-based stats. Identities = 83/269 (30%), Positives = 135/269 (50%), Gaps = 19/269 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-----EVITENPAKFINVLISKGDL 55 M R++ ++++ V A A ++ R+ P V +I + I VL + DL Sbjct: 1 MSPIRIIILLLALVAAGGAALLVSRMSQPQVVTETVTRDNNIIEKEQVSEIKVLTASRDL 60 Query: 56 AVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 +G + L+W +PE V +G + P A++EL G +V++PI K +PI +++V Sbjct: 61 TIGEQIKAEDLQWSIWPELGVAEGQYTETAAPGAVEELTGAVVKMPIYKLEPIMPQRVVK 120 Query: 116 RGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--------SERKPT 166 RG G L L+ + RA ++ IS SA GG I PND VD+++ + + Sbjct: 121 RGEAGLLPVLMGEDMRAVSIGISPESASGGFILPNDRVDLILTYEQTPSATNGLTSARTV 180 Query: 167 VTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL N+RV+AID + +E +G TATLE+ P +A+ + +QS +LSL LR + Sbjct: 181 SMTVLQNVRVLAIDQTYAPGEPEESTRIGQTATLEVLPSEAELVALSQSKGQLSLALRPL 240 Query: 224 ADLNPSSS--EDSDVWDVQEEGKEIQIIK 250 DL SS ++ E + II+ Sbjct: 241 NDLAVSSPRKPRLELNGGDEGEGAVMIIR 269 >gi|254293213|ref|YP_003059236.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] gi|254041744|gb|ACT58539.1| Flp pilus assembly protein CpaB [Hirschia baltica ATCC 49814] Length = 321 Score = 185 bits (470), Expect = 6e-45, Method: Composition-based stats. Identities = 79/237 (33%), Positives = 125/237 (52%), Gaps = 16/237 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 EV + VL++ DL VG V L W ++PEE+ F + P+A++ + Sbjct: 43 SEVGQAEQIPVLKVLVATTDLKVGQFVKEGQLSWQSWPEESNTSSFFTEEMSPDAIEAMQ 102 Query: 95 GVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G +VR ++ G+P+ EK+V G G ++++L G RA ++IS +A GG I PNDHVD Sbjct: 103 GAVVRTNMMAGEPLTSEKVVHPGEAGFMAAVLTPGMRAVAVEISAETAAGGFIFPNDHVD 162 Query: 154 VVMVRSLSERKPT-------VTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELTPM 202 V++ + +PT + +L+N+RV+AID + +VG ATLEL+ Sbjct: 163 VLLTFEVDVERPTGITEETAIDTILNNVRVLAIDGYYRPVEEEAGDAVVGHRATLELSKQ 222 Query: 203 QAKALVAAQSVAKLSLVLRSIAD-LNPSSSEDSDVWDVQEEGK---EIQIIKAGVIV 255 A L+AAQ LSLVLRSI++ PS + + + G +++ + GV V Sbjct: 223 DAMVLMAAQERGDLSLVLRSISELSGPSGATANGLAMASRRGAGSDGVRVFQKGVSV 279 >gi|260462608|ref|ZP_05810814.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259031514|gb|EEW32784.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 351 Score = 185 bits (469), Expect = 7e-45, Method: Composition-based stats. Identities = 60/254 (23%), Positives = 115/254 (45%), Gaps = 12/254 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ IV++GVF ++A ++A ++ Q + N + V+++ L G + Sbjct: 1 MRANTIIMIVLAGVFGVLAVVLANIWLAN---QRGAIAQTNEVQRDTVVVAAVALKFGDI 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRG 117 ++ + L VA+P V G + G I +P+ K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKTTEELLTKDLPVGGGTKQALQSIGVNEPVLATKITGPG 117 Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLS 172 LS++L +G +A ++ ++ V G + P D VD+++ R++ + T V V+L Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTVRDDDGTDKSFVDVLLQ 177 Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +++V+A+D D + V + TLE + A+ L A +LSL LR A ++ Sbjct: 178 SMKVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237 Query: 232 EDSDVWDVQEEGKE 245 E + D+ E Sbjct: 238 ERITLSDLTGETPA 251 >gi|78186538|ref|YP_374581.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] gi|78166440|gb|ABB23538.1| pilus assembly protein CpaB [Chlorobium luteolum DSM 273] Length = 262 Score = 185 bits (469), Expect = 8e-45, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 117/239 (48%), Gaps = 19/239 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + + + ++ + +A A R V+ + ++ V+I + +G +T Sbjct: 1 MKKPIIAAIALILGAMAAFTAARWVN---------VAQHTGP--KVVIVALPIELGKAIT 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 ++ V +P + G + ++ + RV ++ G+P+ KL +G GGL Sbjct: 50 AEQIKAVNWPGTDAPQGAYANTA------DVVSRIARVSMMPGEPVLPGKLAPKGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S++P GKRA T+ ++ AV G P +VDV++ + +P VL+ ++V+AI Sbjct: 104 ASIIPDGKRAITVKVNEVIAVAGFALPGSYVDVLVSGKDASHQPFARTVLNRVKVLAIAQ 163 Query: 182 NIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ ++ V + TLELTP +++ L A+S+ LSLVLR+ D +S + D+ Sbjct: 164 ETTAEPDKPKVVNAVTLELTPHESEKLDLARSIGSLSLVLRNELDTGEENSAGVRMSDL 222 >gi|194335912|ref|YP_002017706.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] gi|194308389|gb|ACF43089.1| Flp pilus assembly protein CpaB [Pelodictyon phaeoclathratiforme BU-1] Length = 263 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 61/241 (25%), Positives = 113/241 (46%), Gaps = 20/241 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + + ++ + +A +A R +S V++ + + G Sbjct: 1 MKPQQFV-LAIALILGAMAAFLAARWMS-----------VAQTSMSRVVVVEQPIEAGKA 48 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + + + + +P V + + G + V ++ G+P+ KL G Sbjct: 49 IKAHQIRSIDWPGSAVPRDASTRIAS------VVGRIALVSMMPGEPVLPGKLAPTTATG 102 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 GLSS++PKGKRA T+ ++ AV G P +VDV++ + ++P VL ++V+AI Sbjct: 103 GLSSIIPKGKRAITVKVNEVIAVAGFALPGSYVDVLVSSKDANQQPFSVTVLLRVKVLAI 162 Query: 180 DHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 +D ++ V + TLELTP +A+ L A+++ LSLVLR+ D +S + D Sbjct: 163 AQETTADRDKPKVVNAVTLELTPHEAEKLDLARNIGALSLVLRNEFDTGKINSAGVRLSD 222 Query: 239 V 239 + Sbjct: 223 I 223 >gi|85859140|ref|YP_461342.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] gi|85722231|gb|ABC77174.1| flp pilus assembly protein [Syntrophus aciditrophicus SB] Length = 295 Score = 184 bits (468), Expect = 1e-44, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 19/246 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K L+ + + AL+ ++A + Q P + V+++ D+ V+ Sbjct: 3 KKKHLIFLGGAVFLALIVTLLAYNWI-----QKTATAKAKPQEMQKVVVAAFDVPWSTVL 57 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NG 119 T +++ F +E++ +G+ D Q + G V PI +PI +L G Sbjct: 58 TKDMVRTATFLKESLPNGYYLDPAQ------IVGRTVIQPIRTNEPITEARLAPTSIRTG 111 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 G+++++ KRA ++ + V G I P + VDV++ + + P +VL NI V Sbjct: 112 GVAAVITPSKRAMSVKVDKVVGVSGYIHPGNRVDVLVTLNEQRGEVTAPVTKIVLENILV 171 Query: 177 IAID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 +A + E+ TLE+TP + + L A + K+ L LR+ D ++ Sbjct: 172 LASGPEFNETKKGEKPANVDVITLEVTPEEGEKLALASTEGKIQLALRNFGDNEAVATRG 231 Query: 234 SDVWDV 239 + + ++ Sbjct: 232 AKIPNL 237 >gi|90411207|ref|ZP_01219220.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] gi|90328053|gb|EAS44374.1| hypothetical Flp pilus assembly protein [Photobacterium profundum 3TCK] Length = 266 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 117/267 (43%), Gaps = 30/267 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVS------PHHVQTEEVITENPAKFINV------- 48 K + + +S + L A I+A + + E +T+ + V Sbjct: 3 KGKIFLTLFISIMMGLGALILANNWLQSKQANLNSQTKPSEPVTQVEVQIKEVMKEEPKV 62 Query: 49 --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + ++ + +G + L +P + V +++ G+L R I +GD Sbjct: 63 PRVTAQQRIPLGTKIEAKHLSIEYYPTDLVS------TKGYETPEQVVGMLARNEIFEGD 116 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +R E+LV G G L++L+ RA T+ ++ V G + P D VDV+ + S Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYTKEKSNN-- 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL I+++A+D +D+ + ++ TLELTP QA++LV A+S +L L LR+ Sbjct: 175 -AVTVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKA 251 D+ ++ + + IIK Sbjct: 234 DIEKIKTKRVY----RRTTDAVTIIKG 256 >gi|258405292|ref|YP_003198034.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] gi|257797519|gb|ACV68456.1| Flp pilus assembly protein CpaB [Desulfohalobium retbaense DSM 5692] Length = 295 Score = 184 bits (467), Expect = 1e-44, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 104/245 (42%), Gaps = 13/245 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPH--HVQTEEVITENPAKFINVLISKGDLAVGM 59 +L L+ I ++ V A+ + + T E E V+++ D++ G Sbjct: 3 RLRALIPIALALVIAIAGSVFIYNWMQEQTTRQDTVEKAREKAPSTQEVVVAALDISAGS 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117 +T +L+ + ++N+ G D Q L G + P K +PI +L Sbjct: 63 QLTEEMLQTGQYLKKNLPPGSFTDPDQ------LLGRVALAPFKKNEPIVDHRLAPTDIK 116 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176 +GG+S+L+ KG RA ++ + + G + P VDV++ + +L N+++ Sbjct: 117 SGGVSALISKGNRAVSLGGNKVLGISGFVLPGSRVDVMVTWNDPDSGEQITKRILDNVKI 176 Query: 177 IAIDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A + E TLE+TP +A+ L ++ L + LR+ D P ++ + Sbjct: 177 LATSTKMQETESGGTAPVDVYTLEVTPEEAEILTHIRNQGSLQMALRNPTDNEPVMTDGA 236 Query: 235 DVWDV 239 D Sbjct: 237 TAKDS 241 >gi|13475418|ref|NP_106982.1| pilus assembly protein [Mesorhizobium loti MAFF303099] gi|14026170|dbj|BAB52768.1| pilus assembly protein [Mesorhizobium loti MAFF303099] Length = 354 Score = 183 bits (466), Expect = 2e-44, Method: Composition-based stats. Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 12/254 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ IV++GVF ++A ++A ++ Q + N + V+++ L G Sbjct: 1 MRANTVIMIVLAGVFGVLAVVLANIWLAN---QRSAIAQTNDIQRDTVVVAAVALKFGDT 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK---GDPIRLEKLVDRG 117 ++ + L VA+P V G + L G + + +P+ K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKTTEELLTKDVLPGAAPKQALQAIGVNEPVLATKITGPG 117 Query: 118 NG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLS 172 LS++L +G +A ++ ++ V G + P D VDV++ R + V V+L Sbjct: 118 QRATLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDVLLTRTVRSDDGADQSFVDVLLQ 177 Query: 173 NIRVIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +RV+A+D D + V + TLE + A+ L A +LSL LR A ++ Sbjct: 178 GMRVLAVDQVADESKDSPTVVKSVTLEASTKDAQKLTLAAGAGQLSLALRQAAASKGETT 237 Query: 232 EDSDVWDVQEEGKE 245 E + D+ E Sbjct: 238 ERVTLSDLTGEMPA 251 >gi|167648153|ref|YP_001685816.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] gi|167350583|gb|ABZ73318.1| Flp pilus assembly protein CpaB [Caulobacter sp. K31] Length = 296 Score = 183 bits (465), Expect = 2e-44, Method: Composition-based stats. Identities = 78/295 (26%), Positives = 135/295 (45%), Gaps = 43/295 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58 M R+M ++++ V A+ ++ +++S P VL++K DLA+G Sbjct: 1 MNPLRVMIVLIAAVSAIGLAVVMQKMMSGKAPSAPIAQASAPVGKPMTQVLVAKRDLAIG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQP-------------------------NAMQEL 93 +T + W +P + + FI + + + Sbjct: 61 QRLTAADVTWQPWPSDTINAAFITNGAADPVPAKATAKAAKAVGDVAEGMIGGVTPEKAV 120 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +G +VR PIL G+PI K+V G GG LS +L GKRA + ++ +AVGG + P D V Sbjct: 121 EGAIVRDPILAGEPITSRKIVRGGEGGYLSVVLSPGKRAMAVPVTSETAVGGFVLPGDRV 180 Query: 153 DVVMVRS---------LSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201 DV+ R S + ++ N+RV+A+D + D + +V +TATLE+ P Sbjct: 181 DVIQTREAQSVGEGEGASGKHTIAETIVQNVRVLALDQATAAEKDAKTIVATTATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 ++A+AL A++ ++L LR+ DL S + +E ++I + G N Sbjct: 241 IEAEALTRAKAAGPVTLTLRAYTDLGGPSG----LAVRSQEASVVRINRGGETSN 291 >gi|254506783|ref|ZP_05118923.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] gi|219550364|gb|EED27349.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] Length = 233 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 51/215 (23%), Positives = 94/215 (43%), Gaps = 11/215 (5%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 F L A A + + E+ + V+I+ ++ G + + E Sbjct: 2 FGLGAVFFAKQWMDRQLQPQTEL---EVVEREPVIIASQEIPAGTPIEEQHITTKLLEVE 58 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAAT 133 +G D + + G +V I G+ + +L G G L+SL+P+ KRA T Sbjct: 59 WRNEGQFTDQN------AILGQVVATTIFPGEVLHQNRLTVPGEGSTLASLIPENKRAVT 112 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVG 192 + ++ V G + P + VDV+ S VL +I+V+A+D + E + ++ Sbjct: 113 IRVNDVIGVAGFLLPGNRVDVLNTIKYSATSANTVTVLKDIKVLAVDQTARTKENKPIIV 172 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 TLE++P A+ L+ A+S ++ L LR+ + Sbjct: 173 RAVTLEVSPKDAEKLLTARSKGEIQLTLRNPHEEE 207 >gi|294012240|ref|YP_003545700.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675570|dbj|BAI97088.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 295 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 110/228 (48%), Gaps = 9/228 (3%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A V+ ++ E + V+++ L G VT + V +P +V G Sbjct: 4 LAAVFVANSYLSRAEKVPPPEGGMAKVVVATVSLPFGSAVTAEKIRVVDWPANSVPPGAF 63 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISS 140 D Q ++ G +V I G+PI KL G +S++L RA + +S + Sbjct: 64 RDPIQLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVAVRVSDVA 121 Query: 141 AVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGST 194 A GG + P D VDV + R+L + + V+L RVIAID N D+ + VG T Sbjct: 122 AAGGFVLPGDTVDVFVTRTLQDPMGGASQQITDVLLQGTRVIAIDQNANDTSKDPAVGKT 181 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 ATLE+ + A+ LV AQ V +L+LVLR++ D + + + D+++ Sbjct: 182 ATLEVNQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 229 >gi|304320646|ref|YP_003854289.1| CtpC protein [Parvularcula bermudensis HTCC2503] gi|303299548|gb|ADM09147.1| CtpC protein [Parvularcula bermudensis HTCC2503] Length = 253 Score = 183 bits (464), Expect = 3e-44, Method: Composition-based stats. Identities = 75/259 (28%), Positives = 122/259 (47%), Gaps = 15/259 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLA 56 MK RL+ ++V+ A + L + P + V+ S D+ Sbjct: 1 MKAARLLILLVAIAAGGAAFFM---LAGNDEPAVTTAVPTAPIQPRMAMAEVMFSAKDIP 57 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +++ +++WV +P NV + FI Q + + L R+ I PI V Sbjct: 58 QGAILSEGMVKWVKWPSANVPEFFITKDDQ-DFIDNLGLRRARLRIDANQPIYGVNTVAH 116 Query: 117 GNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 G+ G L+S+L G RA T + + GG I P D VD+ + + + +L NIR Sbjct: 117 GDRGMLASILTPGMRAVTARMGLEETSGGFILPGDRVDIFATGIGDDGQMETSAILRNIR 176 Query: 176 VIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+AID N+ ++ L GST T EL+P Q + + A+ +L+LVLRS+ DL+P + Sbjct: 177 VLAIDQVTNVTDEQTALNGSTVTFELSPAQVPSFIGARDNKQLTLVLRSVYDLSPET--G 234 Query: 234 SDVWDVQEEGKEIQIIKAG 252 + D E E+ +I+ G Sbjct: 235 MPIVDTSPE--EVVVIRFG 251 >gi|259417281|ref|ZP_05741200.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] gi|259346187|gb|EEW58001.1| Flp pilus assembly protein CpaB [Silicibacter sp. TrichCH4B] Length = 267 Score = 182 bits (463), Expect = 4e-44, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 9/226 (3%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI-DDVH 85 + + E E +NV ++ L G +T + VA+PE + +G ++ Sbjct: 9 AYQNALAHERSNREAAVPTVNVFVANKTLTYGEELTKENVRAVAWPENALPEGIFSEESD 68 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGG 144 + D V + K +P+ K+ G + G++S L KG RA + + ++S V G Sbjct: 69 LFPSDSPKDARYVLRTMEKNEPLLAVKITAPGEDAGITSRLEKGMRAFAIRVDVASGVSG 128 Query: 145 MIKPNDHVDVVMVRSLSER------KPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATL 197 ++P D VDV R ++ SNI +IA+D D ++ T T+ Sbjct: 129 FLRPGDRVDVYWSGQPPARSGQERSGEVTRLIQSNIELIAVDQMSGGDFSNAIIARTVTV 188 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 + P + L AQS +LSL L D +S + D + G Sbjct: 189 KAQPEEVARLAQAQSTGRLSLALVGAQDDTIASLVEVDQRSLFGLG 234 >gi|296284551|ref|ZP_06862549.1| Flp pilus assembly protein CpaB [Citromicrobium bathyomarinum JL354] Length = 353 Score = 182 bits (462), Expect = 4e-44, Method: Composition-based stats. Identities = 77/270 (28%), Positives = 130/270 (48%), Gaps = 15/270 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN-VLISKGDLAVGM 59 M +L+ ++ + V A IA + + T VL+++ L VG Sbjct: 1 MDRKKLVLLLAALVIAAGTAFIARSMFAGASAPEVAAATGPVEPTGPRVLVAQRSLPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++T + + + A+P+E V D + D + +L G +VR I G+P+ LV G+ Sbjct: 61 IITQDAISYQAWPQELVRDAYFIDGEA--DVSKLLGTVVRYQITAGEPVTQGALVAPGDR 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 G L++ L G RA T+ ++ ++V G + P D VD++M +E +L N+RV+A Sbjct: 119 GFLAAALGPGMRAITVPVNAQTSVAGFVFPGDRVDLMMTHE-TEGVKATETILRNLRVLA 177 Query: 179 IDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-----P 228 D + D + +V ST TLE+TP A+ + AQ+V LSL LRSIAD + Sbjct: 178 TDQSTSQNTVDGQTVVNGFSTVTLEVTPKIAEKIAVAQTVGTLSLSLRSIADNSTDLERA 237 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 +S D + D +E +++ + D Sbjct: 238 LASGDIAIPDDATPEEEARLLARARNMPSD 267 >gi|260574617|ref|ZP_05842620.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] gi|259023034|gb|EEW26327.1| Flp pilus assembly protein CpaB [Rhodobacter sp. SW2] Length = 284 Score = 182 bits (462), Expect = 5e-44, Method: Composition-based stats. Identities = 54/243 (22%), Positives = 103/243 (42%), Gaps = 8/243 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M++ + +VV A A +A +S E + V + L G Sbjct: 1 MRMVFGLVLVVGLALAGFAVYMAQGFISQTQAELAQERAARAKAGPLVEVYVVNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T ++ + +P+ + + D + V + K +P+ K+ + G Sbjct: 61 DPLTKEDVQKIYWPQNALPETIFTDEALLFPANAVGQRFVLRQMEKFEPLLAVKVTEPGQ 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174 + GL++ L KG RA + + +S V G + P D+VDV + ++ ++ S I Sbjct: 121 DAGLTARLAKGMRAFAIKVDATSGVSGFLHPGDNVDVYWTGTANDAGVGGEMTRLIESTI 180 Query: 175 RVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 ++IA+D + D +V +T T+E +P + L AQ+ KL+L L D + + Sbjct: 181 KIIAVDQMANDDRSGSAVVAATVTVEASPEEVARLAQAQATGKLALSLVGANDASVAGLV 240 Query: 233 DSD 235 + D Sbjct: 241 EVD 243 >gi|86137992|ref|ZP_01056568.1| CpaB family protein [Roseobacter sp. MED193] gi|85825584|gb|EAQ45783.1| CpaB family protein [Roseobacter sp. MED193] Length = 286 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 112/257 (43%), Gaps = 14/257 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A +S + + E +V ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYISAYQTELARERANRGEVIPTTDVFVATKQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 +T + + V +P + + +G + P +L +V + K + + KL + Sbjct: 61 ERLTEDAVRKVRWPSDAIPEGAFTTLETLFPPANPGDL--RVVLRTMEKDEALLEAKLTN 118 Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTV 169 G + G++S L +G RA + + +SS V G ++P DHVDV S + + Sbjct: 119 PGQDAGITSQLQRGMRAFAISVDVSSGVSGFLRPGDHVDVYWTGGVRDGSGGRGQEITRL 178 Query: 170 VLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 + +I +IA+D + ++ + T T+ + P Q AL AQ+ +LSL L D Sbjct: 179 IEPSIELIAVDQSASTETNGATIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTV 238 Query: 229 SSSEDSDVWDVQEEGKE 245 +S + + + G++ Sbjct: 239 ASVIEVNQRSLLGLGEQ 255 >gi|197106458|ref|YP_002131835.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479878|gb|ACG79406.1| pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 287 Score = 182 bits (461), Expect = 7e-44, Method: Composition-based stats. Identities = 64/227 (28%), Positives = 113/227 (49%), Gaps = 7/227 (3%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISKGDLAVGM 59 R+M + + + + A + + + Q A VL++ L G Sbjct: 4 SRRMMYLGAAALLSSGAVFLTQQWLQGQLSQATASARAGAAPAAAEAQVLVAAQALPPGT 63 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ P+ + W A+P + G++ A ++ G +VR + G P+ +V G+ Sbjct: 64 ILKPSHVRWQAWPADAPTAGYLTSAASGPA--QIAGAVVRGELQPGQPLTTTGVVQPGDR 121 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 L+++L G RA T+++S +S V G I P D VD+V+ R + + + VL+++RV+ Sbjct: 122 SFLAAVLKPGHRAVTVNVSAASGVAGFIFPGDRVDLVLSRRIGDDRHVSETVLTDVRVVG 181 Query: 179 IDHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 ID + + V+V TATLE+TP QA+ + + KLSL LRS+A Sbjct: 182 IDQRVANEKQEVVVPQTATLEVTPKQAEIVALMPELGKLSLSLRSLA 228 >gi|319782174|ref|YP_004141650.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168062|gb|ADV11600.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 344 Score = 181 bits (460), Expect = 7e-44, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 108/251 (43%), Gaps = 11/251 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L+ IV++GVF ++A ++ ++ Q + + V+++ L G Sbjct: 1 MRANTLIMIVLAGVFGVLAVVLVNIWLAG---QRSAMAQTGVVQGSTVVVAAMPLKFGDA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 ++ + L VA+P V G A I +PI K+ G Sbjct: 58 LSADKLREVAWPAGAVPAGAFKSTKDLLAGD--GAKQALQSIGVNEPILATKITGPGQRA 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS++L +G +A ++ ++ V G + P D VD+++ R K V V+L +++ Sbjct: 116 TLSAVLGEGMKAVSIRVNDVLGVAGFVFPGDRVDILLTRTARGDDGADKSFVDVLLQSMK 175 Query: 176 VIAIDHNIDS-DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+AID D + V + TLE + A+ L A +LSL LR A ++E Sbjct: 176 VLAIDQVADESKDSPTVVKSVTLEASTRDAQKLTLAAGAGQLSLALRQAAASKGETTERV 235 Query: 235 DVWDVQEEGKE 245 + D+ E Sbjct: 236 TLSDLTGETPA 246 >gi|258621446|ref|ZP_05716480.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262165920|ref|ZP_06033657.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] gi|258586834|gb|EEW11549.1| Pilus assembly protein [Vibrio mimicus VM573] gi|262025636|gb|EEY44304.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus VM223] Length = 250 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 16/236 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + + V + I+ D+ G V+ L + Sbjct: 19 AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTK------LL 69 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136 + ++ Q + + L G +V PI +G+ I +++L G G L+SL+P+ RA T+ + Sbjct: 70 EKSWRNISQFSDTKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D S E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++AQS ++ L LR+ P E+ + + IIK Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 240 >gi|262171231|ref|ZP_06038909.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] gi|261892307|gb|EEY38293.1| flp pilus assembly protein RcpC/CpaB [Vibrio mimicus MB-451] Length = 250 Score = 181 bits (460), Expect = 8e-44, Method: Composition-based stats. Identities = 61/236 (25%), Positives = 107/236 (45%), Gaps = 16/236 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + + V + I+ D+ G V+ L + Sbjct: 19 AAVFFAKQWMDKQMTPQQAVEVVEREPVV---IAAIDIPAGSVIEQQHLTTK------LL 69 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136 + ++ Q + + L G +V PI +G+ I +++L G G L+SL+P+ RA T+ + Sbjct: 70 EKSWRNISQFSDPKVLVGQIVTGPIFQGEIIYVQRLTVPGEGSTLASLIPEKMRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D S E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 TLE+TP QA+ L++AQS ++ L LR+ P E+ + + IIK Sbjct: 190 TLEVTPEQAEKLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 240 >gi|16127176|ref|NP_421740.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|221235977|ref|YP_002518414.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] gi|7208424|gb|AAF40191.1|AF229646_3 CpaB [Caulobacter crescentus CB15] gi|13424572|gb|AAK24908.1| pilus assembly protein CpaB [Caulobacter crescentus CB15] gi|220965150|gb|ACL96506.1| pilus assembly protein CpaB [Caulobacter crescentus NA1000] Length = 297 Score = 181 bits (460), Expect = 9e-44, Method: Composition-based stats. Identities = 79/294 (26%), Positives = 133/294 (45%), Gaps = 42/294 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVI------TENPAKFINVLISKGD 54 M RL+ ++++ V A+ ++ R + + ++ VL++K D Sbjct: 1 MSPVRLLIVLIAAVSAIGLAVVLQRALGGAPAKPTGLVEAPGGPAAPGKPMTQVLVAKRD 60 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAM 90 L VG + + W A+P +++ FI + P + Sbjct: 61 LPVGTRLVATDVGWQAWPSDSINAAFITNGSAPVTPDGKVEAAKAVVAATADQMIGGDPA 120 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPN 149 + ++G +VR PIL G+PI K+V G GG LS +L GKRA ++ ++ +AVGG I P Sbjct: 121 KIVEGAIVRDPILIGEPITPRKIVRGGEGGYLSVVLTPGKRAMSVPVTSDTAVGGFILPG 180 Query: 150 DHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTP 201 D VDV+ R VL NIRV+A+D + D + +V +TATLE+ P Sbjct: 181 DRVDVLSTRDAPAAGDQGGKVMIAETVLQNIRVLALDQATAAEKDAKSIVAATATLEVGP 240 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255 ++A+AL A++ ++L LR+ D+ S V ++I + G Sbjct: 241 VEAEALARAKAGGPITLALRAYTDMGGPSGVTHAVAGDDS---TVRINRGGQTT 291 >gi|54302291|ref|YP_132284.1| Flp pilus assembly protein [Photobacterium profundum SS9] gi|46915713|emb|CAG22484.1| hypothetical Flp pilus assembly protein [Photobacterium profundum SS9] Length = 264 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 61/243 (25%), Positives = 112/243 (46%), Gaps = 26/243 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHV------QTEEVITENPAKFINV------- 48 K + + +S + L A I+A + + E +T+ + V Sbjct: 3 KGKIFLTLFISIMMGLGALILANNWLQSKQANLNAQTKPSEPVTQVEVQIKEVMKEEPKV 62 Query: 49 --LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++++ + +G + L +P + V +++ G+L R I +GD Sbjct: 63 PRVMAQQRIPLGTKIEAKHLSIEYYPTDLV------KSKGYETPEQVVGMLARNEIFEGD 116 Query: 107 PIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 +R E+LV G G L++L+ RA T+ ++ V G + P D VDV+ ++ S Sbjct: 117 LLRKERLVTPGEGTTLAALISPNMRAVTIRVNDVIGVAGFLLPGDFVDVIYIKEKSNN-- 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VL I+++A+D +D+ + ++ TLELTP QA++LV A+S +L L LR+ Sbjct: 175 -AITVLKKIKILAVDQTARTDDSKPVIVRAVTLELTPKQAESLVTAKSKGELQLSLRNPN 233 Query: 225 DLN 227 D+ Sbjct: 234 DIE 236 >gi|307294423|ref|ZP_07574267.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306880574|gb|EFN11791.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 307 Score = 181 bits (459), Expect = 1e-43, Method: Composition-based stats. Identities = 66/223 (29%), Positives = 110/223 (49%), Gaps = 8/223 (3%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 ++ ++ + E + V+++ L G VT + V +P +V G D Sbjct: 22 FIANSYLSSAEKAPQADGGMAKVVVATVSLPFGSAVTAEKIRTVDWPANSVPPGAFRDPI 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGG 144 Q ++ G +V I G+PI KL G +S++L RA + +S +A GG Sbjct: 82 QLTSLG--KGRVVLRQIEPGEPILASKLSGEGGRATMSAVLAPEMRAVAVRVSDVAAAGG 139 Query: 145 MIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATLEL 199 + P D VDV + R+L++ + V+L RVIAID N D+ + VG TATLE+ Sbjct: 140 FVLPGDTVDVFVTRTLTDPVAGSQQITDVLLQGTRVIAIDQNANDTSKDPAVGKTATLEV 199 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + A+ LV AQ V +L+LVLR++ D + + + D+++ Sbjct: 200 NQVDAQKLVLAQQVGQLTLVLRNLTDKPNPAVQTVGIEDLRDG 242 >gi|126729099|ref|ZP_01744913.1| CpaB family protein [Sagittula stellata E-37] gi|126710089|gb|EBA09141.1| CpaB family protein [Sagittula stellata E-37] Length = 288 Score = 180 bits (458), Expect = 1e-43, Method: Composition-based stats. Identities = 56/245 (22%), Positives = 104/245 (42%), Gaps = 11/245 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58 M+L + ++ A A +A + + + + + +S +A G Sbjct: 1 MRLVFGLVLLAGIGLAGFAVYMAQNYIGAYETALVQARQQTHVSVPTKQIYVSARPIAYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + +PEE + +G D+ P + ++ + I + I K+ G Sbjct: 61 QEITEEDIRLAPWPEEIMPEGIFDE-ETPLLTENMEPRVALRAIDAFEAIVPSKVSQPGG 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVL 171 + GL+ L G+ A + + ++S V G ++P D VDV + R P ++L Sbjct: 120 SAGLTHYLKPGESAFAIRVDVASGVSGFLRPGDRVDVYWTGRVDSRDPNMPRGEVTKMIL 179 Query: 172 SNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + IR+IAID N ++D + T T+ T Q L AQS +L+L L S + + Sbjct: 180 AGIRLIAIDQNSEADTSGTSIARTVTVAATREQTLVLTHAQSTGQLTLSLISQNEDGEAI 239 Query: 231 SEDSD 235 + + D Sbjct: 240 TTEVD 244 >gi|209515950|ref|ZP_03264811.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] gi|209503608|gb|EEA03603.1| Flp pilus assembly protein CpaB [Burkholderia sp. H160] Length = 375 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 64/257 (24%), Positives = 108/257 (42%), Gaps = 22/257 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R++ IV+ + A V II L V + P V ++ DL GM++ Sbjct: 1 MPRILKIVILVILASVGAIIFRALF----VAASQPGQARPPAMDRVRVAAADLPEGMLLR 56 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNA-MQELDGVLVRVPILKGDPIRLEKLVDRGN-GG 120 + L W P + V G + +A +L G ++R + G + ++ G Sbjct: 57 ESDLAWKEVPHKQVLQGALVKGDAESAEATDLKGDVLRHAVTAGTMLGTADVIPPNAPGF 116 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVL 171 L++ L G RA ++ I S G+I+P D+VDV++ + L R V+ Sbjct: 117 LAAALKPGMRAISVAIDDVSGNAGLIQPGDYVDVLLTQQLDGPVHAPQNTARSVESETVV 176 Query: 172 SNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-- 224 + +RV+A+ D+ + T T E+TP A+ + A + LSL LRS A Sbjct: 177 NRVRVLAVGSIFQRPKADAADANTRARTVTFEVTPHTAQVIAVATHLGSLSLALRSFATS 236 Query: 225 DLNPSSSEDSDVWDVQE 241 D NP + + Sbjct: 237 DRNPPVIANETLPQTPP 253 >gi|157375509|ref|YP_001474109.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] gi|157317883|gb|ABV36981.1| Flp pilus assembly protein CpaB-like protein [Shewanella sediminis HAW-EB3] Length = 274 Score = 180 bits (457), Expect = 2e-43, Method: Composition-based stats. Identities = 58/248 (23%), Positives = 111/248 (44%), Gaps = 20/248 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ +++S +F + A +A + + NP +V+ + +G + Sbjct: 1 MNNKTILFVLLSLIFGVAAVFLAQSWLKTN------TEAVNPQVSTSVITMATLVPLGTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L P + + I + +G++V+ + G+ +R E++ +G G Sbjct: 55 LERKHLILTPMPNTVIPETAIKT------FEGAEGMVVKQNLYAGEVLRSERITVKGEGS 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+SL+ RA T+ ++ V G + P + VDV+ + R VVL+N++++AI Sbjct: 109 TLASLISPQMRAVTIRVNDVVGVAGFLLPGNRVDVLNLFKRGGRLQ-TDVVLANVKILAI 167 Query: 180 DHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 D +DE + + TLEL QA+ L+ A+ KL L LR+ D S ++ Sbjct: 168 DQRSSNDENKPKLVRAVTLELNLEQAEVLMIAKGRGKLQLALRNPND-----STKVELAL 222 Query: 239 VQEEGKEI 246 + E I Sbjct: 223 INEAKDTI 230 >gi|83943940|ref|ZP_00956397.1| CpaB family protein [Sulfitobacter sp. EE-36] gi|83845187|gb|EAP83067.1| CpaB family protein [Sulfitobacter sp. EE-36] Length = 287 Score = 180 bits (456), Expect = 2e-43, Method: Composition-based stats. Identities = 56/246 (22%), Positives = 104/246 (42%), Gaps = 11/246 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M++ + ++ A A +A +S + Q + + V ++ G L G Sbjct: 1 MRMVFGLVLLAGIALAGGAVYLAKGRISEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + V +PE + +G + D +V + K + I K+ + G Sbjct: 61 QRLTREDVRQVNWPENAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAVKVTEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVV 170 + GL+S L +G RA + + +SS V G ++P D VDV ++ + ++ Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180 Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + +++IAID + + + +T T+ + P Q AL AQS LSL L D + Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240 Query: 230 SSEDSD 235 + D Sbjct: 241 GEIEVD 246 >gi|116748929|ref|YP_845616.1| SAF domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697993|gb|ABK17181.1| SAF domain [Syntrophobacter fumaroxidans MPOB] Length = 292 Score = 180 bits (456), Expect = 3e-43, Method: Composition-based stats. Identities = 64/267 (23%), Positives = 125/267 (46%), Gaps = 14/267 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPH-HVQTEEVITENPAKFINVLISKGDLAVGMV 60 + + + ++ V ALVA ++ + V VQT V + + V ++ DL G Sbjct: 3 RFRAIFPLALAIVLALVASVVVYKWVQMKTGVQTTVVTEKAEPGGVQVALASADLPWGTK 62 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 +T +++ +P +++ G+ D +++G ++ P+ +G+ + KL Sbjct: 63 LTREMVKMAEYPPKHLPAGYFSDPA------KIEGRVLITPVKQGEQLLESKLAPLSVTT 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRV 176 GG+S+++ GKRA + + G I+P + VDV++ ++ K T VVL N++V Sbjct: 117 GGVSAVVSVGKRAIAVAGDKVIGLAGFIQPGNFVDVLVTIRDTQEKTPSTSKVVLENVKV 176 Query: 177 IAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A ID TLE+TP +A+ L A S+ KL LR++ D + + Sbjct: 177 LATGTVIDKKAGTEPGPVDVFTLEVTPEEAERLAFAASLGKLHFALRNVTDTEVVYTMGT 236 Query: 235 DVWDVQEE-GKEIQIIKAGVIVNKDGE 260 + D + ++++ A +V + E Sbjct: 237 TIADALDAYRPRMKMVSAQPVVKSEPE 263 >gi|83954513|ref|ZP_00963224.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] gi|83840797|gb|EAP79968.1| CpaB family protein [Sulfitobacter sp. NAS-14.1] Length = 287 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 104/246 (42%), Gaps = 11/246 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M++ + ++ A A +A + + Q + + V ++ G L G Sbjct: 1 MRMVFGLVLLAGIALAGGAVYLAKGRIGEYQRANQQAQEALAQIVPTVGVYVANGPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + V +PE+ + +G + D +V + K + I K+ + G Sbjct: 61 QRLTREDVRQVKWPEDAIPEGTFIEEAALFPENSDDLRVVLRAMEKDEAIMAAKVTEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-------ERKPTVTVV 170 + GL+S L +G RA + + +SS V G ++P D VDV ++ + ++ Sbjct: 121 DTGLTSQLERGSRAFAIRVDVSSGVSGFLRPGDRVDVYWTGRINRGGNDRADTGDVTKLI 180 Query: 171 LSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 + +++IAID + + + +T T+ + P Q AL AQS LSL L D + Sbjct: 181 EAGVKIIAIDQSAGGERSEAAIANTVTVAVQPYQVAALAQAQSTGDLSLSLVGAEDDTVA 240 Query: 230 SSEDSD 235 + D Sbjct: 241 GEIEVD 246 >gi|255262747|ref|ZP_05342089.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] gi|255105082|gb|EET47756.1| Flp pilus assembly protein CpaB [Thalassiobium sp. R2A62] Length = 282 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 110/246 (44%), Gaps = 7/246 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + +V+ A A +A +S + ++ E +++ +K L G Sbjct: 1 MRAVFGLVLVLGVALAGFAVYMAKGYISDNQLRLAQAEAARAAMVPTVDIFAAKNPLVYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 ++T + + +PE ++ G + + + +V PI + I K+ G Sbjct: 61 QMLTIEDVHHIRYPEASLPPGAFRTIEELFPNGDEKLRVVLRPIEPNEVILPVKVTSPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNI 174 + GL+ L +G RA + + +SS V G ++P D VDV + R+ ++ S++ Sbjct: 121 DAGLTQRLAQGMRAFAIRVDVSSGVSGFVRPGDRVDVYWSGVANVGQRRQDLTRLIQSSV 180 Query: 175 RVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 ++IAID + D ++ + T T+E++ ++ AL AQ+ LSL L D + Sbjct: 181 KIIAIDQSADGNQSEARIARTVTVEVSQVEVAALAQAQATGNLSLALVGYGDNTDVGIVE 240 Query: 234 SDVWDV 239 D ++ Sbjct: 241 IDTQEL 246 >gi|77462454|ref|YP_351958.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221638317|ref|YP_002524579.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides KD131] gi|332560338|ref|ZP_08414660.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] gi|77386872|gb|ABA78057.1| Putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides 2.4.1] gi|221159098|gb|ACM00078.1| Flp pilus assembly protein CpaB precursor [Rhodobacter sphaeroides KD131] gi|332278050|gb|EGJ23365.1| Flp pilus assembly protein CpaB [Rhodobacter sphaeroides WS8N] Length = 274 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 9/251 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+L +++ A A +A +S + E + + V ++ L G Sbjct: 1 MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + + +P + + V + K +P+ K+ G Sbjct: 61 APLTRADVRTIMWPANALPETIFQK-ESDLFPDPAKPRYVLRQMEKFEPVLGVKVTAPGI 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G+ L G RA + + ++S V G ++P D VDV S S + T ++ I ++ Sbjct: 120 EAGI--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIV 176 Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D ++D ++ T T+E++P Q L AQ+ +LSL L D +++ D Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVD 236 Query: 236 VWDVQEEGKEI 246 ++ E ++ Sbjct: 237 TRNLIGEPDKV 247 >gi|126461332|ref|YP_001042446.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] gi|126102996|gb|ABN75674.1| putative Flp pilus assembly protein CpaB [Rhodobacter sphaeroides ATCC 17029] Length = 274 Score = 179 bits (455), Expect = 3e-43, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 102/251 (40%), Gaps = 9/251 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+L +++ A A +A +S + E + + V ++ L G Sbjct: 1 MRLVFAFVLLIGIALAGFAVYMAQGYISQTQIALEKERAARKKLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + + +P + + V + K +P+ K+ G Sbjct: 61 APLTRADVRTIMWPANALPETIFQKESDL-FPDPAKPRYVLRQMEKFEPVLGVKVTAPGI 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G+ L G RA + + ++S V G ++P D VDV S S + T ++ I ++ Sbjct: 120 EAGI--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGSASSGE-TTRLIEKTIPIV 176 Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D ++D ++ T T+E++P Q L AQ+ +LSL L D +++ D Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEATATPVD 236 Query: 236 VWDVQEEGKEI 246 ++ E ++ Sbjct: 237 TRNLIGEPDKV 247 >gi|46580523|ref|YP_011331.1| hypothetical protein DVU2118 [Desulfovibrio vulgaris str. Hildenborough] gi|46449942|gb|AAS96591.1| conserved hypothetical protein [Desulfovibrio vulgaris str. Hildenborough] gi|311234262|gb|ADP87116.1| Flp pilus assembly protein CpaB [Desulfovibrio vulgaris RCH1] Length = 272 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 59/252 (23%), Positives = 113/252 (44%), Gaps = 18/252 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAG++ R V + V + + ++++ D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGVLVFRFVQVNRVAQQT----QQPPGVVLVVAAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + + L+ F + G D + L G ++ P+ G+ I +L+ + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ R+ V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + D TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDVWDVQEEGK 244 +DV + + Sbjct: 231 GTDVPATLRQLQ 242 >gi|126737255|ref|ZP_01752990.1| CpaB family protein [Roseobacter sp. SK209-2-6] gi|126721840|gb|EBA18543.1| CpaB family protein [Roseobacter sp. SK209-2-6] Length = 285 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 56/244 (22%), Positives = 108/244 (44%), Gaps = 9/244 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A + +S H E + ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKKYISAHQAALAHERANRAEVIPTTEIYVAVKQLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFID-DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +T ++ V +P E++ +G + + + D +V I + I K+ G Sbjct: 61 ERLTAEAVKKVRWPTESLPEGAFEMEAELFPTAKPSDQRVVLRMIEPNEAILAVKVTKPG 120 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVVLS 172 + G++S L +G RA + + ++S V G ++P D VDV + + ++ S Sbjct: 121 EDAGITSQLQRGMRAFAIKVDVTSGVSGFLRPGDRVDVYWTGVARGASGQDGEMTRLIES 180 Query: 173 NIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +I +IA+D + +D ++ T T+ + P Q AL AQ+ +LSL L D +S+ Sbjct: 181 SIELIAVDQSASTDVNGAMIARTVTVAVQPEQVAALAQAQTTGRLSLSLVGAGDDTVASA 240 Query: 232 EDSD 235 + D Sbjct: 241 IEVD 244 >gi|260771479|ref|ZP_05880404.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|260613605|gb|EEX38799.1| flp pilus assembly protein RcpC/CpaB [Vibrio furnissii CIP 102972] gi|315181061|gb|ADT87975.1| Flp pilus assembly protein CpaB [Vibrio furnissii NCTC 11218] Length = 249 Score = 179 bits (454), Expect = 4e-43, Method: Composition-based stats. Identities = 57/248 (22%), Positives = 108/248 (43%), Gaps = 17/248 (6%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ ++S +F L A A + + EV + + D+ V+ Sbjct: 7 ILLFLLSVLFGLGAVFFAKQWMDRQVQPQTEVEVVERVPVVV---ASRDIPASTVIEEQY 63 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSL 124 L + + + + E+ G + I + I ++L G G L++L Sbjct: 64 LTTRLLEKSWMTENQFSEP------TEVIGKIAESDIYPNEIIVAQRLSIPGEGATLAAL 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +P+ KRA T+ ++ V G + P + VDV+ S+ T +L +IRV+A+D Sbjct: 118 IPEDKRAVTIRVNDVIGVAGFLLPGNKVDVLNTIQYSKTSANTTTILKDIRVLAVDQTAK 177 Query: 185 SDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 + E + ++ TLE++P +A+ L++A+S + LVLR+ P + E+ V Sbjct: 178 TQENKPIIVRAVTLEVSPKEAEKLLSAKSKGDIQLVLRN-----PHAVEEKVVRRYVPP- 231 Query: 244 KEIQIIKA 251 + IIK Sbjct: 232 PSVTIIKG 239 >gi|261252086|ref|ZP_05944659.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260935477|gb|EEX91466.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 247 Score = 178 bits (453), Expect = 5e-43, Method: Composition-based stats. Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 11/218 (5%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 S VF L A A + + EV I + ++ G V+ + Sbjct: 13 SIVFGLGAVFFAKQWMDRQLQPQVEVEVVEREPVIV---AAQEIFAGSVIEEQHVT---- 65 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKR 130 + + D Q +EL G + I G+ I +L G G L+SL+P+ KR Sbjct: 66 --SRLLEKDWRDELQFTKAEELVGQVAATTIYPGEIIHPNRLSSSGEGSTLASLIPENKR 123 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RV 189 A T+ ++ V G + P + VD++ + + + VL I+V+A+D S E + Sbjct: 124 AVTIRVNDVIGVAGFLLPGNKVDILNTVKYGKNSASTSTVLKEIKVLAVDQTARSKENKP 183 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ TLE+TP QA+ L++AQS + L LR+ + Sbjct: 184 VIVRAVTLEVTPRQAEKLLSAQSRGNIQLTLRNPHEEE 221 >gi|320155488|ref|YP_004187867.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] gi|319930800|gb|ADV85664.1| flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus MO6-24/O] Length = 248 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 11/213 (5%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136 + ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 70 EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTISYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 TLE+TP QA+ L++A+S ++ L LR+ + Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222 >gi|120602160|ref|YP_966560.1| SAF domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562389|gb|ABM28133.1| SAF domain [Desulfovibrio vulgaris DP4] Length = 272 Score = 178 bits (452), Expect = 6e-43, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 113/252 (44%), Gaps = 18/252 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ T ++ ++ + V ALVAGI+ R V + V + + +++S D+ G Sbjct: 1 MRRTAVIQVIAALVLALVAGILVFRFVQVNRVAQQT----QQPPGVVLVVSAVDMEKGAK 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 + + L+ F + G D + L G ++ P+ G+ I +L+ + Sbjct: 57 IRADQLKTSTFLSASAPPGGFTDA------KSLVGRVLATPVTTGEVITETRLLPADATS 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIR 175 GG+S+++ G RA + + + G I+P + VD+++ R+ V+L+ I+ Sbjct: 111 GGVSTMIAPGMRAVAVKGNKVMGLAGFIRPGNRVDIMVTIDDETREKAKARTKVILAGIK 170 Query: 176 VIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 V+A + D TLE+TP QA+ L A S +L LR+ AD P + Sbjct: 171 VLATGTELRQEGDDTATSPVEVYTLEVTPEQAELLSLAASRGELHFALRNPADDLPVRTA 230 Query: 233 DSDVWDVQEEGK 244 +DV + + Sbjct: 231 GTDVPATLRQLQ 242 >gi|239814525|ref|YP_002943435.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] gi|239801102|gb|ACS18169.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] Length = 280 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 13/203 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ D+ +G V P +L V +P ++ G D + L+ +V+V +L+G+ Sbjct: 38 KVVVAAVDIELGSRVNPQMLSLVDWPSGSLPAGSFKDA------KSLEDRVVKVGVLRGE 91 Query: 107 PIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---- 161 I KL G GGLS+++ GKRA T+ ++ V G P ++VDV++ Sbjct: 92 AILEGKLAPVGTQGGLSAVIASGKRAMTVRVNDVVGVAGFALPGNYVDVMVNAQQDKNRG 151 Query: 162 -ERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 E + VL + V+A+ + D+ + V S TLEL+ ++ L A+SV LSLV Sbjct: 152 EEGRQISKTVLEKVLVLAVAQEANRDDTKPKVVSAVTLELSLEDSEKLDLARSVGTLSLV 211 Query: 220 LRSIADLNPSSSEDSDVWDVQEE 242 LR+ D ++ + E Sbjct: 212 LRNQMDKTTVATAGITKGQLFGE 234 >gi|118581114|ref|YP_902364.1| SAF domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503824|gb|ABL00307.1| SAF domain protein [Pelobacter propionicus DSM 2379] Length = 291 Score = 178 bits (452), Expect = 7e-43, Method: Composition-based stats. Identities = 54/220 (24%), Positives = 100/220 (45%), Gaps = 15/220 (6%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +++ K ++++ D+ VG + L+ +A+P ++ G D + L Sbjct: 30 SKKSKETEAGKGKGIVVASADIPVGSKLNTTHLKMMAWPATSIPPGSFTDT------KAL 83 Query: 94 DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI G+P+ KL+ G G ++ ++P G RA T+ ++ + V G + P+ Sbjct: 84 IDRISIRPIGPGEPLTEAKLMPRDGAPGAGIMTYIIPDGHRAVTVAVNEVAGVAGFLSPH 143 Query: 150 DHVDVVMV----RSLSERKPTVTVVLSNIRVIAIDHNIDS-DERVLVGSTATLELTPMQA 204 + VDVV+ S +VL N+ ++A + D + +V T T++LTP A Sbjct: 144 NKVDVVLTTIPPGSNDPNATISKIVLQNVPILATGQITEQKDGKPVVVPTVTIDLTPEDA 203 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + LV A S L ++LR I D S + + V + Sbjct: 204 EKLVVASSKGSLQMLLRGIRDSALVESRGATIAKVLGAVR 243 >gi|27365105|ref|NP_760633.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|27361251|gb|AAO10160.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] Length = 248 Score = 178 bits (451), Expect = 9e-43, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 100/213 (46%), Gaps = 11/213 (5%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136 + ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 70 EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSAVTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 TLE+TP QA+ L++A+S ++ L LR+ + Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222 >gi|322419945|ref|YP_004199168.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] gi|320126332|gb|ADW13892.1| Flp pilus assembly protein CpaB [Geobacter sp. M18] Length = 308 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 60/221 (27%), Positives = 114/221 (51%), Gaps = 13/221 (5%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +E+ + ++++ D+ +G ++ L+ ++P++++ G DV + L Sbjct: 30 QKEMDMTKAVQPQTLVVAAADIPIGGTISEPQLKTTSWPKDSIPPGSAADV------KSL 83 Query: 94 DGVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G + PI GD + +KL + G+G ++ ++P G RA T+ ++ + V G I PN Sbjct: 84 VGRVAIRPISNGDAVTEQKLKPKAGAAGSGFMTYIVPLGHRATTVAVNEVAGVAGFITPN 143 Query: 150 DHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206 D +DVV+ L S+++ ++L N+ V+A + E + +V T TL+LTP A+ Sbjct: 144 DRIDVVLTTQLPGSQKENISKIILQNVPVLATGQITEQKEGKPVVVPTVTLDLTPEDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 LV A S L L+LR+IAD P +++ + + V + Sbjct: 204 LVLAGSKGSLQLLLRNIADSAPLNAKGATIAKVLAGTPPPE 244 >gi|37680845|ref|NP_935454.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37199594|dbj|BAC95425.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 248 Score = 178 bits (451), Expect = 1e-42, Method: Composition-based stats. Identities = 54/213 (25%), Positives = 101/213 (47%), Gaps = 11/213 (5%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A A + + ++V + I+ ++ G V+ P L + Sbjct: 19 AAVFFAKQWMDKQLTPQQDVEVVEREPVV---IAAIEIPAGSVIEPQHLTTK------LL 69 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDI 136 + ++ Q +EL G +V I G+ I ++L G G L++L+P+ KRA T+ + Sbjct: 70 EKSWRELSQYTDPKELVGQIVAGAIYPGEIIIEQRLTVPGEGSTLAALIPENKRAITIRV 129 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTA 195 + V G + P + VDV+ S S+ + VL +I+V+A+D + E + ++ Sbjct: 130 NDVIGVAGFLLPGNRVDVLNTVSYSKGSASTKTVLKDIKVLAVDQTARTKENKPIIVRAV 189 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 TLE+TP QA+ L++A+S ++ L LR+ + Sbjct: 190 TLEVTPDQAEKLLSAKSKGEIQLTLRNPHEPEE 222 >gi|21673268|ref|NP_661333.1| hypothetical protein CT0429 [Chlorobium tepidum TLS] gi|21646356|gb|AAM71675.1| conserved hypothetical protein [Chlorobium tepidum TLS] Length = 278 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 58/246 (23%), Positives = 115/246 (46%), Gaps = 19/246 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + R + +V++ + IA R +S +V+I + +A G + Sbjct: 1 MKRPIFVVIALTLGAMTAFIAARWMSGPKASGP-----------SVVIVEQPIAAGRPIL 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGL 121 ++ +++ V ++ G + VP++ G+P+ KL G GGL Sbjct: 50 AGQIKAISWSGSVVPQEAFSRTA------DVVGRIALVPMIPGEPVLPGKLAPIGATGGL 103 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 SS++P GKRA ++ ++ V G P +VD+++ +P +VLS ++V+A++ Sbjct: 104 SSIIPAGKRAISVRVNDVVGVAGFALPGSYVDILVSGRDVSGQPFSRIVLSKVKVLAVEQ 163 Query: 182 -NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 + ++ V + TLEL+P +++ L A+++ LSLVLR+ D +S + DV Sbjct: 164 DTVAEKDKPKVVNAVTLELSPQESEKLDLARNIGALSLVLRNELDTTVVNSVGVRLSDVV 223 Query: 241 EEGKEI 246 + + Sbjct: 224 YPQRGV 229 >gi|253701799|ref|YP_003022988.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] gi|251776649|gb|ACT19230.1| Flp pilus assembly protein CpaB [Geobacter sp. M21] Length = 291 Score = 177 bits (450), Expect = 1e-42, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 108/210 (51%), Gaps = 13/210 (6%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +EV + + ++++ D+ +G +TP L+ ++P++++ G D+ + + Sbjct: 30 QQEVKSAKAIQPQRIVVAAADIPIGTAITPAQLKVTSWPKDSIPPGSARDI------EAV 83 Query: 94 DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI GD + KL G G ++ ++P+G RA T+ ++ + V G + P+ Sbjct: 84 ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143 Query: 150 DHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206 D VDV++ +E++ +VL N+ ++A D E + +V T TL+L P A+ Sbjct: 144 DRVDVIVTTPLPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 LV + S L L+LR+I+D++ S + + Sbjct: 204 LVLSASKGSLQLLLRNISDISHVDSRGATI 233 >gi|197117447|ref|YP_002137874.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] gi|197086807|gb|ACH38078.1| Flp pilus assembly protein CpaB [Geobacter bemidjiensis Bem] Length = 291 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 54/210 (25%), Positives = 109/210 (51%), Gaps = 13/210 (6%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +EV + A+ ++++ D+ +G +TP L+ ++P++++ G ++ + Sbjct: 30 QQEVKSAKAAQPQRIVVAAVDIPIGTAITPAQLKVASWPKDSIPPG------SARGIEAV 83 Query: 94 DGVLVRVPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + PI GD + KL G G ++ ++P+G RA T+ ++ + V G + P+ Sbjct: 84 ANRVAIRPITGGDAVTEAKLKPRSGAPGAGFMTYVVPQGHRAVTVAVNEVAGVAGFLTPS 143 Query: 150 DHVDVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKA 206 D VDV++ + +E++ +VL N+ ++A D E + +V T TL+L P A+ Sbjct: 144 DRVDVIVTTPVPGNEKENISKIVLENVPILATGQVTDQKEGKPVVVPTVTLDLVPDDAEK 203 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 LV + S L L+LR+I+D + S+ + + Sbjct: 204 LVLSASKGSLQLLLRNISDSSHVDSKGATI 233 >gi|114568969|ref|YP_755649.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] gi|114339431|gb|ABI64711.1| Flp pilus assembly CpaB [Maricaulis maris MCS10] Length = 278 Score = 177 bits (448), Expect = 2e-42, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 120/231 (51%), Gaps = 19/231 (8%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +L ++ D+ +G ++ W A+P+E + G+I + ++ + + G +VR PI Sbjct: 42 PAVRILAARRDVEIGERISAADFYWQAWPDEALAPGYIVE-NRGQTIADFAGSVVRAPIS 100 Query: 104 KGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----- 157 +G+PI +LV G+ G ++++L G RA + IS + GG I PND VDV++ Sbjct: 101 QGEPITGRRLVQPGDAGFMAAVLTPGMRAVAVPISAETGAGGFILPNDRVDVIVSFEEET 160 Query: 158 --RSLSERKPTVTVVLSNIRVIAIDH--NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 R + R ++ N RV+AID + ++D+ V VG TATLELTP QA+A+ A + Sbjct: 161 EGRRGAGRAFVARTIVENARVLAIDQSFSSEADDEVAVGETATLELTPDQARAVSVAVAR 220 Query: 214 AKLSLVLRSIADLNPSS--------SEDSDVWDVQEEGKEIQIIKAGVIVN 256 +++LVLRS+ D + + E + + +I+ G Sbjct: 221 GEIALVLRSLTDNSGAPVLVSGGELPEAPSQSFQERRSSSVTLIRYGRAQQ 271 >gi|146276365|ref|YP_001166524.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] gi|145554606|gb|ABP69219.1| Flp pilus assembly protein CpaB-like protein [Rhodobacter sphaeroides ATCC 17025] Length = 274 Score = 175 bits (445), Expect = 4e-42, Method: Composition-based stats. Identities = 53/255 (20%), Positives = 107/255 (41%), Gaps = 9/255 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+ ++ +++ A A +A +S V E+ + V ++ L G Sbjct: 1 MRFVFVLVLLLGLGLAGSAVYMAQGYISQTQVALEKEREARKRLGPMVEVFVTNKPLNYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 ++ ++ + +P + + D + V + K +P+ K+ + G Sbjct: 61 APLSREDVQKILWPANALPETIFKD-ETALFPETGKPRYVLRQMEKFEPVLAVKVTEPGV 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 GL L G RA + + ++S V G ++P D VDV + + + T ++ I ++ Sbjct: 120 EAGL--RLASGMRAFAIKVDVASGVSGFLQPGDRVDVYWTGAGANGE-TTRLIEKTIPIV 176 Query: 178 AIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 A+D ++D ++ T T+E++P Q L AQ+ +LSL L D + + D Sbjct: 177 AVDQTANADLATSAIIARTVTVEVSPQQVARLAQAQATGRLSLSLVGRDDTTEADAAPVD 236 Query: 236 VWDVQEEGKEIQIIK 250 + E I +I+ Sbjct: 237 TRILIGEPDRIVVIE 251 >gi|78357402|ref|YP_388851.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219807|gb|ABB39156.1| putative pilus assembly protein CpaB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 272 Score = 175 bits (444), Expect = 5e-42, Method: Composition-based stats. Identities = 64/247 (25%), Positives = 110/247 (44%), Gaps = 22/247 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVL--ISKGDLAVG 58 MK + L+ I V+ V AL AG + R++ T P K +V+ ++ D+ G Sbjct: 1 MKKSSLIQIAVALVLALGAGALVFRMM------QAPARTAQPPKVASVMLAVAAADMTKG 54 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 + + F + G ++ EL G ++ + G+PI +LV+ Sbjct: 55 TRIRAEQITMAEFLLQTAPAGAF------SSADELTGRVLASAVTAGEPITPARLVEDTV 108 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSN 173 GG+S+++ GKRA + + + G I+P +HVDV++ + R K VL N Sbjct: 109 RYGGVSTMISPGKRAVAVKGNNVLGMAGFIRPGNHVDVLVTIDDNRRPQDKAVTKTVLEN 168 Query: 174 IRVIAIDHNIDS---DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 IRV+A ++ D TLE+ P + + L A S ++ LR+ AD + Sbjct: 169 IRVLATGTELEQQGDDTATSPVDIYTLEMLPREVEVLSLAASRGEVHFSLRNPADTDSVK 228 Query: 231 SEDSDVW 237 + +DV Sbjct: 229 TAGTDVP 235 >gi|134299960|ref|YP_001113456.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052660|gb|ABO50631.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 234 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 109/236 (46%), Gaps = 19/236 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + +++ +F LVA + + + F V++ L + Sbjct: 1 MRNK--LIFILAIIFGLVAAFGVYQYLGHLKQSY-----RSSGNFKQVVVPTQPLGPKTL 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--N 118 +T +++ P E + G A Q++ G + R + +PI L ++ + Sbjct: 54 ITDKMVKVKDIPVELIQPG------TAIAPQDVVGKITRSELYPEEPIMLNRIYKDSNTD 107 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177 G L+ L+P+G+RA T+ + S V G+++P DHVD+++ E+ T++L NI+V+ Sbjct: 108 GDLALLIPEGQRALTVAVDDVSGVAGLLQPGDHVDIIVTFDYEGEQTSLSTLLLQNIQVL 167 Query: 178 AIDHNIDSD---ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A+ ++D+ E+ T TL + P QA L A + L+LRS D ++ Sbjct: 168 AVGQSLDNTPKAEKKTSSQTVTLSVQPGQATPLTLATERGSIRLMLRSPKDAGTAN 223 >gi|116626780|ref|YP_828936.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229942|gb|ABJ88651.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 309 Score = 174 bits (441), Expect = 1e-41, Method: Composition-based stats. Identities = 63/246 (25%), Positives = 119/246 (48%), Gaps = 21/246 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + + + V AL+ + K + V+++ D+A+G ++ Sbjct: 3 RQKKFLLFGAAWVSALLLTWFYY----------ANAVAPKQEKTLRVVVASRDMAIGTLL 52 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + L+ V +PE+++ G + +Q + +V VP+ +P+ KL D G Sbjct: 53 KKSDLKVVNYPEKDIPKGAV------FTLQGAENRVVMVPMNTNEPVLQGKLSDTTTVEG 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++S + KG RA ++ ++ + V G+I+P HVDV+ R S + T + +L N+RVI+ Sbjct: 107 VASTIEKGYRAVSVQVTDVTGVAGLIQPGSHVDVLFTRPGSMAEATTSTILQNVRVISTG 166 Query: 181 HNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +I + D R T TL LTP +A+ L A++ ++ L LR+ DLN +S + Sbjct: 167 RSITAGQVVDPRAPKSPTVTLVLTPDEAQKLELAKNQGRIGLSLRNPLDLNRDASTEPLT 226 Query: 237 WDVQEE 242 +V + Sbjct: 227 TEVLDP 232 >gi|294012432|ref|YP_003545892.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292675762|dbj|BAI97280.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 338 Score = 173 bits (439), Expect = 2e-41, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPPAGASSMPVEADQPHVLVATKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P++ V + + Q+L G ++R I G P+ L ++ G Sbjct: 61 ILDAESFRFQPWPKDLVEQAYY--IKGQADPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D VD+V+ +S+S +L N Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLVLTQSVSGGGEGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVA 214 +RV+A D +D+ D + +V S T+E+TP A+ + AQ++ Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224 >gi|89068016|ref|ZP_01155433.1| CpaB family protein [Oceanicola granulosus HTCC2516] gi|89046255|gb|EAR52312.1| CpaB family protein [Oceanicola granulosus HTCC2516] Length = 281 Score = 173 bits (438), Expect = 3e-41, Method: Composition-based stats. Identities = 60/256 (23%), Positives = 113/256 (44%), Gaps = 5/256 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A +A + Q E + + V + G Sbjct: 1 MRAVFGLVLIVGVGLAGFAVYMAQGYLQDTQAQLARERAVAAQATPTVEVYAVTRQIGYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +TP+ + V + E + DG + + +V P+ +P+ K+ + G Sbjct: 61 EQLTPDDVTLVKYAEPFLPDGVFRAEEELFPEGDTQLRVVLRPMEVNEPVLAVKVTEPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRV 176 + G++S L +G RA + + ++S V G ++P D VD+ R+ + ++ SN+ + Sbjct: 121 DAGITSRLGRGMRAFAIRVDVASGVSGFLRPGDKVDIYWTGRNSRGGEEVTKLIESNVNL 180 Query: 177 IAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 IAID + D + T T+E+TP Q AL AQS +LSL L D + + + D Sbjct: 181 IAIDQSADGSALNTTIARTVTVEITPQQVAALAQAQSTGRLSLSLVGTNDDTVAEAIEVD 240 Query: 236 VWDVQEEGKEIQIIKA 251 + ++ Q+++A Sbjct: 241 QRRLLGIPEQQQVVEA 256 >gi|159043679|ref|YP_001532473.1| SAF domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157911439|gb|ABV92872.1| SAF domain protein [Dinoroseobacter shibae DFL 12] Length = 280 Score = 172 bits (437), Expect = 3e-41, Method: Composition-based stats. Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 5/231 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M+L + +++ A A ++A + V ++ + V + + G Sbjct: 1 MRLVFGLVLLLGVGLAGFAVMMAKDRFDQYQTVVAKQQQKLAAAVDVVEVYVMDTPIRYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 + + + V +P + + +G E + +P+ K+ + G Sbjct: 61 EKIGKDDVRKVRWPADALPEGAFQTEEGLFPDAEGRLRTATRAMEANEPVLAVKVTEPGQ 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + G+SS L KG RA + ++++S V G ++P D VDV S S+ + ++ S++++I Sbjct: 121 DAGVSSRLGKGMRAFAISVTVTSGVSGFLRPGDRVDVYWSGS-SKGQDVTKLIQSSMQII 179 Query: 178 AIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ID N D D + T T+E TP Q L AQ LSL L AD Sbjct: 180 GIDQNADMDRTAPTIARTVTVEATPQQVAGLAQAQRTGSLSLSLVGAADDA 230 >gi|307293449|ref|ZP_07573295.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306881515|gb|EFN12731.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 338 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 14/226 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVGM 59 M +++ +V + + A+ ++A ++S + A +VL++ L VG Sbjct: 1 MDAKKIVLLVGALIIAVTTALLARNMLSSSSAPQASASSMPVEADQPHVLVATKALPVGT 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 ++ + +P+E V + + Q+L G ++R I G P+ L ++ G Sbjct: 61 ILDAESFRFQPWPKELVEQAYYLKGQ--SDPQKLVGSVIRTAISAGQPMTLGSVIKPGER 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVLSN 173 G L++ L G RA T+ +S ++V G + P D VD+++ +S+S +L N Sbjct: 119 GFLAAALGPGMRAVTVPVSAQNSVAGFVFPGDRVDLMLTQSVSGGGDGEPLKVSETILRN 178 Query: 174 IRVIAIDHNIDS---DERVLV--GSTATLELTPMQAKALVAAQSVA 214 +RV+A D +D+ D + +V S T+E+TP A+ + AQ++ Sbjct: 179 LRVLATDQRMDALGDDGKPVVQTYSNVTIEVTPKIAEKIAVAQTIG 224 >gi|308050060|ref|YP_003913626.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] gi|307632250|gb|ADN76552.1| Flp pilus assembly protein CpaB [Ferrimonas balearica DSM 9799] Length = 288 Score = 172 bits (436), Expect = 4e-41, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 113/249 (45%), Gaps = 17/249 (6%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + L +++S F + A ++A + ++ V+ + G ++ Sbjct: 1 MRSLFFVLISIGFGIGAVLLAQNWLKQGQP------SDIDDNRQPVMTMAISVPSGTIIQ 54 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-L 121 L + P V D + +++ G++ + P+++GD + +KLV +G G L Sbjct: 55 EKHLVLKSVPPGLVPDEVLSKP------EQVVGMVAKFPLVEGDFLSRQKLVPKGEGSVL 108 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVIA 178 +SL+ RA T+ ++ V G + P + VDV++ R ++ VVLSN++V+A Sbjct: 109 ASLIAPNMRAVTIRVNDVVGVAGFLLPGNRVDVLVTLAKRRSADETAQTEVVLSNLKVLA 168 Query: 179 IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 +D + D + ++ TLE+T QA+ L++A+S + L LR+ D + + Sbjct: 169 VDQRANQDSNQPVLVRAVTLEVTLEQAEELMSARSRGNIQLALRNPNDDVEVAVASDEAA 228 Query: 238 DVQEEGKEI 246 + E Sbjct: 229 QTAQVAPEP 237 >gi|83312839|ref|YP_423103.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] gi|82947680|dbj|BAE52544.1| Flp pilus assembly protein CpaB [Magnetospirillum magneticum AMB-1] Length = 300 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 24/270 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ +VV+ + A ++A + + + + + +LI D+ G Sbjct: 1 MRPI-VIIVVVAALAAGGTAMLAKSWLDRQEARRAK--AADEPATVEILIINRDVPSGAA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + + L + ++P+ V + ++ G++ R P+ +G+P+ +G Sbjct: 58 LAGDDLRYESWPKAAVSPRLVTRKPGEDSKAAFVGMIARRPLAEGEPVSAATTFRPEASG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++ LL G RA ++ I+ +AV G + P D VDVV+ + + + Sbjct: 118 VMAGLLAPGMRAISIAITNPTAVSGFVTPGDRVDVVLASDIKKSEEGINAEAGSGLLLRY 177 Query: 166 TVTVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL+++RV+AID I D + G TATLE+TP QA+ L A + L L LR Sbjct: 178 GAETVLADLRVLAIDQQITRGRDGAPIQGKTATLEVTPKQAEILTVAGMMGTLQLSLRPQ 237 Query: 224 ----ADLNPSSSEDSDVWDVQEEGKEIQII 249 P+ E D E GK +Q + Sbjct: 238 RGEDGAAKPAMGEVLDFTADLEAGKVLQAV 267 >gi|332188388|ref|ZP_08390113.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] gi|332011617|gb|EGI53697.1| flp pilus assembly protein CpaB [Sphingomonas sp. S17] Length = 329 Score = 172 bits (436), Expect = 5e-41, Method: Composition-based stats. Identities = 68/258 (26%), Positives = 116/258 (44%), Gaps = 22/258 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV---ITENPAKFINVLISKGDLAV 57 M +L+ +V + + A + + A L + + P VL++ L V Sbjct: 1 MDSRKLLLLVGALLVAGMTAVFARTLTAGSGAPQAGAAVIVAPPPETGPEVLVATRALPV 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G ++ L++ +P+E V + + +L G +VR I G P+ +V G Sbjct: 61 GTIIDATALKFQPWPKEMVGGAYYLKGQA--DLAKLQGTVVRYAITAGQPLTQGAVVQPG 118 Query: 118 N-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-----PTVTVVL 171 + G L++ L G RA T+ +S + V G + P D +D+V+ + ++ +L Sbjct: 119 DRGFLAAALTPGMRAVTVPVSAQTGVAGFVFPGDRIDMVLTQDVAGGGDGPPLKVSETIL 178 Query: 172 SNIRVIAIDHNIDS------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 N+RV+A D DS + +T T+E TP A+ L AQ+V LSL LR++AD Sbjct: 179 RNVRVLATDQRTDSQSGEDGKTPIQTFTTVTVEATPKMAEQLAVAQTVGTLSLSLRALAD 238 Query: 226 -----LNPSSSEDSDVWD 238 NP++ V D Sbjct: 239 RPDDLQNPAAVNAGPVAD 256 >gi|323702114|ref|ZP_08113782.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] gi|323532996|gb|EGB22867.1| Flp pilus assembly protein CpaB [Desulfotomaculum nigrificans DSM 574] Length = 234 Score = 172 bits (435), Expect = 6e-41, Method: Composition-based stats. Identities = 57/245 (23%), Positives = 111/245 (45%), Gaps = 19/245 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ +F L A + + + F V++ K + + Sbjct: 1 MRNK--LILILAILFGLAAAFGVFKYLDGLKKSY-----RSSGNFKQVVVPKQTIGPNTM 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118 +T +++ P E + G D +++ G + R + +PI L +L Sbjct: 54 LTAQMVKVKDIPVEMIQPGTAMDT------KDVVGKVTRSDLYPEEPILLSRLHQDKDST 107 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVI 177 G L+ +P G+RA T+++ S V GM+KP DHVD+++ K T +++L NI+V+ Sbjct: 108 GELALAIPTGQRALTVEVDAVSGVAGMLKPGDHVDILVTFDYEVEKTTLTSLLLQNIKVL 167 Query: 178 AIDH---NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 A+ + ++ + T TL +TP QA L K+ L+LRS D ++ S Sbjct: 168 AVGQSLVSAQKGDQKVNTQTVTLAVTPEQAPPLTLGSERGKIRLMLRSPKDEGTANLPSS 227 Query: 235 DVWDV 239 + ++ Sbjct: 228 RMQNL 232 >gi|149176582|ref|ZP_01855195.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] gi|148844695|gb|EDL59045.1| Flp pilus assembly CpaB [Planctomyces maris DSM 8797] Length = 349 Score = 171 bits (434), Expect = 7e-41, Method: Composition-based stats. Identities = 57/256 (22%), Positives = 118/256 (46%), Gaps = 21/256 (8%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V A+ G++AM V + ++ + K NVL++ ++ G + + +++ ++P Sbjct: 3 LVIAVGCGLVAMLGVRQVLNKDDQ---QAEVKTANVLMTIAEIPPGTPLNESNVKFKSWP 59 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + V +G + +++ ++ + G+ + KL ++G G S +P GKR Sbjct: 60 IDQVPEGAVTK------LEQYKDRSIKTRAVPGEIVMKAKLSEQGVRGASVEIPDGKRVF 113 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIRVIAIDHNID---S 185 T + ++ G+I P D VDV + + + + V+L +++ A DH D + Sbjct: 114 TTSVDMTKTHSGLILPGDFVDVYVTFTARKPEGGMSTITKVILERVKIFATDHLTDVGGT 173 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 + + +L L+P + L A+ ++ L LR+ +D S++ DV +E E Sbjct: 174 ESNQVKSKNISLLLSPREGAMLKLAEKKGEVHLALRAQSD----STDSEDVQFDDDELAE 229 Query: 246 IQIIKAGVIVNKDGEG 261 + I+ + KDGE Sbjct: 230 VFSIEGSEYL-KDGEE 244 >gi|327189766|gb|EGE56910.1| putative cpaB pilus assembly protein [Rhizobium etli CNPAF512] Length = 304 Score = 171 bits (434), Expect = 9e-41, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 103/248 (41%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + V ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGMKAEERTLV-VAAKPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L+ + +P G + + I G+P+ K+ G Sbjct: 60 IRSENLKAIPWPSNETPAGSFVSIETVVGNDD-QPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ R + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPEGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR++A + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSIEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|23016178|ref|ZP_00055937.1| COG3745: Flp pilus assembly protein CpaB [Magnetospirillum magnetotacticum MS-1] Length = 296 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 75/282 (26%), Positives = 119/282 (42%), Gaps = 33/282 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ + A G++A + Q + A + VL+ D+ G ++ + L + + Sbjct: 1 MASLAAGGTGMLANAWLDR---QESRHAKADDAPVVEVLVINRDVPSGAALSVDDLRYES 57 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGK 129 +P + +A G++ R + +G+P+ + G L+ LL GK Sbjct: 58 WPRSAATARLVVRRPGEDAKAAFVGMIARRALTEGEPVSAATTFKPDSSGVLAGLLGPGK 117 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------------------V 167 RA ++ I+ +AV G I P D VDVVM+ L + + Sbjct: 118 RAISITITNPTAVSGFITPGDRVDVVMLTDLKKIEDAQGRESKQEEGRFGGETLLVRFGA 177 Query: 168 TVVLSNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 VLS+IRV+AID I D + G TATLE+TP QA+ LV A+++ L L LR Sbjct: 178 ETVLSDIRVLAIDQQITRGRDGAAIQGKTATLEVTPKQAEILVLAETMGMLQLSLRPQQG 237 Query: 226 LNPSSSEDS----DVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 P+ + D E GK +Q G K G S Sbjct: 238 DGPAVAPQPGEMLDFTADLEAGKALQ-ASVGFAAKKKGTKAS 278 >gi|209546484|ref|YP_002278402.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537728|gb|ACI57662.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 305 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 102/248 (41%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + + ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMREYLSDQKARLLAMNGVKAEERTLI-VAAKPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + P L + +P G + I G+P+ K+ G Sbjct: 60 IRPENLRAIPWPSNETPAGSFVSIETVVGSDA-QPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ R + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR+IA + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNIASASVEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|260426594|ref|ZP_05780573.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] gi|260421086|gb|EEX14337.1| Flp pilus assembly protein CpaB [Citreicella sp. SE45] Length = 286 Score = 171 bits (433), Expect = 1e-40, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 110/245 (44%), Gaps = 11/245 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+L + ++ A A +A + + +Q E + ++ + G Sbjct: 1 MRLVFGLVLIAGLGLAGFAVHLAQKQFGAYQNALQLERAKAVKAVPTRMIYVTTQAVPTG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 V+ ++ +P+E + +G D+ + P A E +V + K + + ++ + G Sbjct: 61 EVLRKEYVKLAPWPQEILPEGVFDETNPPFADGEAP-RVVTRAMDKFEAVLTTRISEPGG 119 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171 + GL++ L +G+RA + + ++S V G ++P D VDV + R ++ Sbjct: 120 DAGLTTRLERGQRAFAIKVDVTSGVSGFLRPGDRVDVYWTGKMPGTDANLPRGEVTKLIE 179 Query: 172 SNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + +++IAID + + + T T+ ++P Q L AQS +LSL L + D + + Sbjct: 180 TAVKLIAIDQTAEVENSDATIARTVTVAVSPQQVAGLAQAQSTGRLSLSLLAANDDSIAE 239 Query: 231 SEDSD 235 + + D Sbjct: 240 AIEVD 244 >gi|225872753|ref|YP_002754210.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] gi|225791215|gb|ACO31305.1| putative flp pilus assembly protein CpaB [Acidobacterium capsulatum ATCC 51196] Length = 271 Score = 170 bits (432), Expect = 1e-40, Method: Composition-based stats. Identities = 56/251 (22%), Positives = 102/251 (40%), Gaps = 18/251 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +L ++ + V + ++ R ++ A + + +AVG V Sbjct: 1 MKSRQLTALLAALVISGGFTLLLGRKLTHS--------AHRAAPQKQYMAAARPIAVGEV 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + ++ + +P G + +++ G P+ G PI L G+ Sbjct: 53 IQAADVKTILWPANLPLQGGMATT------KDVIGRAAIFPVTVGQPILSTDLAAPGSSL 106 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIA 178 G+++ +P G RA + AVGG I P HVDV++ R+ +P VL N V+A Sbjct: 107 GITTRIPNGMRAIALHTDDVIAVGGFIFPGSHVDVLVTYRNPGSPQPITATVLQNALVLA 166 Query: 179 IDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 H D + + TL L+P A+ V A + + VLR+ AD +D+ Sbjct: 167 TGHQTQPDPQGKPTTVNIVTLLLSPEDAERAVLASTQGTIHFVLRNGADQQKGMPPPADL 226 Query: 237 WDVQEEGKEIQ 247 ++ + + Sbjct: 227 AELDGYSPQPR 237 >gi|317154606|ref|YP_004122654.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] gi|316944857|gb|ADU63908.1| Flp pilus assembly protein CpaB [Desulfovibrio aespoeensis Aspo-2] Length = 273 Score = 170 bits (432), Expect = 2e-40, Method: Composition-based stats. Identities = 62/275 (22%), Positives = 120/275 (43%), Gaps = 30/275 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ I +S + AL G++ S T++ + A+ + V+++ DL G+ +T Sbjct: 5 ARALIQIGISLILALGTGVLIFMWTSGV---TQQPVAAPRAETVPVVVALTDLRPGIKLT 61 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGG 120 P +LE F ++ G + LDG ++ V + + + KL D GG Sbjct: 62 PAMLETRQFTPDSRPSGAFGEPGL------LDGRVLGVAVGANEAVTEAKLADASVIGGG 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPTVTVVLSNIRVI 177 +S+L+ GKRA ++ + + G ++P D VDV++ ++ +P +VL ++V+ Sbjct: 116 VSALIEPGKRAMSVKGNAVMGLAGFVRPGDRVDVIVSLVQGRGNQEEPVTKLVLERVKVL 175 Query: 178 AID---HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 A D++ + TLELTP +++ L A + L+ LR+ D + ++ Sbjct: 176 ATGTELQAPDTEGKAASVDVYTLELTPDESERLALAATQGTLNFALRNATDTDKVLTDGV 235 Query: 235 DV-------------WDVQEEGKEIQIIKAGVIVN 256 V V+ +++I G Sbjct: 236 TVNKALAALRPAPKPAPVRRNQVSVEVITGGETTT 270 >gi|114764945|ref|ZP_01444118.1| CpaB family protein [Pelagibaca bermudensis HTCC2601] gi|114542657|gb|EAU45681.1| CpaB family protein [Roseovarius sp. HTCC2601] Length = 286 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 106/238 (44%), Gaps = 10/238 (4%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + +Q E + + +A G ++TP+ ++ +P E + +G + + Sbjct: 29 AYQNALQEERQKAVEAVPTGRIYVMTRPIARGEILTPDAVKLAPWPMEIMPEGIFTE-KR 87 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGM 145 P ++ +V + K D + ++ + G + GL+S L +G+RA + + +++ V G Sbjct: 88 PLFVEGDAPRVVVNAMDKFDAVLDGRVSEPGGDAGLTSRLERGERAFAIKVDVATGVSGF 147 Query: 146 IKPNDHVDVVMVRSLSERKP------TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATL 197 ++P D VDV + P ++ + IR+IA+D +S+ + T T+ Sbjct: 148 LRPGDRVDVYWTGRVPGNDPNLPQGDVTKLIETGIRLIAVDQTAESETANPTTIARTVTV 207 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIV 255 +TP Q L AQS +LSL L + D + + + D + K Q ++ I Sbjct: 208 AITPQQVAGLAQAQSTGRLSLSLMAANDETVADAIEVDQRALLGLTKREQQVEKKSIQ 265 >gi|84386798|ref|ZP_00989823.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] gi|84378326|gb|EAP95184.1| Flp pilus assembly protein CpaB [Vibrio splendidus 12B01] Length = 293 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 116/271 (42%), Gaps = 29/271 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + F V GI + L ++ + + + VL+ + +G Sbjct: 1 MTAKRLMLLSL---FCSVLGISVLLLSQTNNESASTSSKQAVKQTVKVLVPTRTIEIGQA 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGNG 119 TPN W P++ + + +ID V + + L R ++K + + + G Sbjct: 58 YTPNSFRWKEVPQQEL-ENYIDHVTPEDISADHTMSGLARTKLVKDSILSKADITEPEGG 116 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTV 169 LS L G RA ++ + ++ G I+P D VD++++ S + VT Sbjct: 117 YSLSLKLQPGYRAISVPVDQVTSNSGFIEPGDRVDILLLGSQDGELLRYGNSSQGLYVTT 176 Query: 170 VLSNIRVIAID--HNIDSDERVLVGS----------TATLELTPMQAKALVAAQSVAKLS 217 ++ + RV+A + +S ++ + + +LE+TP QA +V A+ + KL+ Sbjct: 177 IVHDARVLAFNDKQTAESYQKARESNQHKKVVPDDSSVSLEVTPEQANQVVLAKQLGKLT 236 Query: 218 LVLR--SIADLNPSSSEDSDVWDVQEEGKEI 246 LVLR + A P + + + + ++ Sbjct: 237 LVLRGQNEAQDQPQHANAVTLKVISPDTTQV 267 >gi|84501677|ref|ZP_00999849.1| CpaB family protein [Oceanicola batsensis HTCC2597] gi|84390298|gb|EAQ02857.1| CpaB family protein [Oceanicola batsensis HTCC2597] Length = 265 Score = 170 bits (431), Expect = 2e-40, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 89/213 (41%), Gaps = 7/213 (3%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 V + L G ++ + + +P + +G + + + V + Sbjct: 23 VPTKMVYVVNRQLKYGEQLSRADVRQIEWPAAAIPEGVFHEENTLFPENDPRPRFVLRTM 82 Query: 103 LKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + + + K+ G + GL+S L KG RA + + ++S V G ++P D VD+ +S Sbjct: 83 ERNEAVLTGKVTAPGEDAGLTSRLEKGMRAFAIKVDVASGVSGFLRPGDKVDIYWTGRVS 142 Query: 162 E-----RKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAK 215 ++ + I++IA+D + D ++ T T+ + P Q AL AQS + Sbjct: 143 GMDRNASGEVTKLIETGIQLIAVDQMANGDHSEAMIARTVTVAVNPQQVGALAQAQSTGR 202 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 L+L L D + + + D + + QI Sbjct: 203 LALSLVGNLDDTVAEAIEVDQRSLLGLSEAPQI 235 >gi|220922531|ref|YP_002497833.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] gi|219947138|gb|ACL57530.1| Flp pilus assembly protein CpaB [Methylobacterium nodulans ORS 2060] Length = 307 Score = 170 bits (430), Expect = 3e-40, Method: Composition-based stats. Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 7/223 (3%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 ++ ++ + + P ++++ L G +TP + +P E +G Sbjct: 19 AAFLARSYLMSVSSVGPAPLPAHTIVVATQPLPFGTQLTPENTTEIDWPSETRLEGSF-- 76 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAV 142 + + + +V I + + + K+ G LS+L+ +G RA + + V Sbjct: 77 -ATRDELLRGERRVVLSSIARNEVVLAGKITGPGQRATLSTLIEEGMRAVAVRVDDVRGV 135 Query: 143 GGMIKPNDHVDVVMVRSLS--ERKPTVTVVLSNIRVIAIDHNI-DSDERVLVGSTATLEL 199 G I PND VDVV+ R E K ++L N++V+AID D ++ V TLEL Sbjct: 136 AGFILPNDRVDVVLTRDEEARESKGFADILLQNVKVLAIDQLANDHADKPTVARAVTLEL 195 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 P+QA+ ++ AQ V +LSL+L + + V D+ Sbjct: 196 NPVQAQKIILAQGVGRLSLILNKAGNATSDTPSRVTVADLGRP 238 >gi|90406751|ref|ZP_01214944.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] gi|90312204|gb|EAS40296.1| Flp pilus assembly protein CpaB [Psychromonas sp. CNPT3] Length = 286 Score = 169 bits (429), Expect = 3e-40, Method: Composition-based stats. Identities = 62/267 (23%), Positives = 112/267 (41%), Gaps = 25/267 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM V + G+ T + + K + +L+S ++ G + Sbjct: 1 MTAKRLMYFSVFISLIGLLGLFM-----SVSSPTAPALIKEENKTLTILVSSQEIKSGRL 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGNG 119 + +I W PE ++ + + +V + G + L Sbjct: 56 YSASIFAWKKVPESDLAEQIDYIQKIDFNNKAYKKSIVTGDLPAGHIMSQSDFLTLEDGA 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVV 170 LS LL G RA ++ + +A G+I+P DHVDV+++ S + R V + Sbjct: 116 FLSVLLRPGYRAVSVGVDHITANSGLIRPGDHVDVLLLASKEKELRSTGNETRSLYVKTI 175 Query: 171 LSNIRVIA------IDHNIDSDERVL----VGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + N+RV+A ID + +R S TLE+ P QA ++ A + LS++L Sbjct: 176 VQNVRVLALNDALQIDRYQEEKKRNKGMLPEKSAVTLEVLPAQANTVILANQLGTLSMLL 235 Query: 221 RSIADLNPSSSEDSDVWDVQEEGKEIQ 247 R+ +D + ++ D+ D+ E K++Q Sbjct: 236 RNSSDNSILANTQVDIGDIFPEIKQVQ 262 >gi|163745847|ref|ZP_02153206.1| CpaB family protein [Oceanibulbus indolifex HEL-45] gi|161380592|gb|EDQ05002.1| CpaB family protein [Oceanibulbus indolifex HEL-45] Length = 286 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 62/245 (25%), Positives = 104/245 (42%), Gaps = 10/245 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 M+ + ++V A A +A +S + + V +++ L G Sbjct: 1 MRAVFGLVLLVGIALAGGAVYLAKDRISQYQAANAQAQAALAQVVPTQTVWVAEKPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + V +PE + +G + D +V I K + I K+ + G Sbjct: 61 QPLTREDVRAVNWPENAIPEGSFIEETLLFPENTKDHRIVLRNIEKDEAIMAVKVTEPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLS 172 + GL+S L +G RA T+ + +SS V G ++P D VDV S ++ S Sbjct: 121 DSGLTSRLARGMRAFTIKVDVSSGVSGFLRPGDRVDVYWTGRVNVGNQSSNGDVTKLIES 180 Query: 173 NIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +++IAID + D+ E + T T+ + P Q AL AQS KLSL L D + Sbjct: 181 AVQLIAIDQSADALVMEEASIAKTVTVAVKPQQVAALAQAQSTGKLSLSLVGTNDDTVAE 240 Query: 231 SEDSD 235 + + D Sbjct: 241 AIEVD 245 >gi|254466356|ref|ZP_05079767.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] gi|206687264|gb|EDZ47746.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium Y4I] Length = 285 Score = 169 bits (428), Expect = 4e-40, Method: Composition-based stats. Identities = 55/246 (22%), Positives = 108/246 (43%), Gaps = 13/246 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVS--PHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A ++A +S + + E ++V ++ L G Sbjct: 1 MRAVFGLVLIVGVALAGGAVMMAKNYISAYQNELARERAARAETVPTVDVFVATKPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVH---QPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 ++ + + V +PE + +G + P + +L +V + K + + K+ Sbjct: 61 ERLSQDAVRAVRWPENAIPEGAYTTLDALFPPQSGDKL--RVVLRAMEKDEAVMAVKVTA 118 Query: 116 RG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV----RSLSERKPTVTVV 170 G + G++S L +G RA + + +SS V G ++P D VDV + R ++ Sbjct: 119 PGEDAGITSRLQRGMRAFAIKVDVSSGVSGFLRPGDKVDVYWTGMMPGAGGSRGEVTRLI 178 Query: 171 LSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 +N+ ++A+D + D ++ T T+ P Q AL AQ+ +LSL L D + Sbjct: 179 ETNVELVAVDQSAGGDINEAIIARTVTVAAKPAQVAALAQAQTTGRLSLALVGAGDDTIA 238 Query: 230 SSEDSD 235 S + D Sbjct: 239 SVVEVD 244 >gi|86360579|ref|YP_472467.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] gi|86284681|gb|ABC93740.1| putative cpaB pilus assembly protein [Rhizobium etli CFN 42] Length = 304 Score = 169 bits (428), Expect = 5e-40, Method: Composition-based stats. Identities = 52/248 (20%), Positives = 102/248 (41%), Gaps = 8/248 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ +V++ V A A +S + + + V ++ + G Sbjct: 1 MRSSTILSLVIAFVLAAAAVFGMRAYLSDQKARLLAMNGVKTEERTLV-VAATPMRFGDR 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + L + +P G + + I G+P+ K+ G Sbjct: 60 IRSENLRAIPWPSNETPTGSFVSIDLVVG-NDAQPRYAMAAIDPGEPVLSSKITGAGERA 118 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR----SLSERKPTVTVVLSNIR 175 LS+ L +G +A ++ ++ V G ++P+D VDV++ R + V V+L ++ Sbjct: 119 TLSAALDQGMKAVSIRVNDVLGVAGFVRPSDRVDVLLTRVVRGPAGNDQTFVDVLLQGVK 178 Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+A+D D + V T T E+T +A+ L S+ LSL LR++A + + Sbjct: 179 VLAVDQTADERKDEPSVVKTVTFEVTTDEAQRLTLGSSIGTLSLALRNVASSSVEQTRPI 238 Query: 235 DVWDVQEE 242 V D+ Sbjct: 239 TVADLGGG 246 >gi|126725968|ref|ZP_01741810.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] gi|126705172|gb|EBA04263.1| CpaB family protein [Rhodobacterales bacterium HTCC2150] Length = 284 Score = 168 bits (425), Expect = 9e-40, Method: Composition-based stats. Identities = 50/257 (19%), Positives = 107/257 (41%), Gaps = 9/257 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVG 58 M+L +V A A +A + + + + +N + V ++ L G Sbjct: 1 MRLVFGAVLVAGVGLAGFAVNMAQDRIGQYQSALAASQANAQNKVELKTVFVASKTLDYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++T + P +++ +G + + + + + K+ G Sbjct: 61 DMLTEEDVREAMVPVDSIPEGAFMAKADLFDENPNKPRQILRLMTENEILLAYKVTKPGE 120 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER-----KPTVTVVLS 172 G+++LL G RA ++ + ++ V G++ +DHVDV ++ ++ + Sbjct: 121 EAGVATLLTPGMRAFSIRVDDTTGVAGLLNADDHVDVYWTGGKADGLGNRDGGVTKLIQA 180 Query: 173 NIRVIAIDHNIDSDERVLV-GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 N++++AID + D T T+E++P Q +L AQ+ KLSL L I+D + Sbjct: 181 NVKLVAIDDSADKQRSSSRSARTVTVEVSPQQVASLAQAQNSGKLSLSLVGISDDIVALV 240 Query: 232 EDSDVWDVQEEGKEIQI 248 E+ D + + + + Sbjct: 241 EEVDQNRLLGVQETVVV 257 >gi|153006806|ref|YP_001381131.1| SAF domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030379|gb|ABS28147.1| SAF domain protein [Anaeromyxobacter sp. Fw109-5] Length = 322 Score = 168 bits (425), Expect = 1e-39, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 96/221 (43%), Gaps = 14/221 (6%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E + V+++ D+ ++ L + +P + G D L Sbjct: 52 EAKASAAKVPTTKVVVASVDIPSATMLRTESLSVIDWPSASTPQGTFADPAT------LV 105 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 +V + KG+PI +L G GL+++LP G RA + ++ V G + P D VD Sbjct: 106 ERVVTSAVSKGEPILESRLAAPGTAAGLAAVLPAGMRAVAVRVNDVVGVAGFLHPGDAVD 165 Query: 154 VVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKA 206 V++ S S P ++L N+RV+A+ ++ ++ + + ATL + Q++ Sbjct: 166 VIVTMSPSGGGGQAPMSKIILQNVRVLAVGKEVERADRAFDKAIPATVATLMVDSEQSEK 225 Query: 207 LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 L A + ++ L LRS AD ++ + G+E + Sbjct: 226 LALAATKGQILLSLRSGADEEMLATPGITPPVLLASGREPE 266 >gi|288956968|ref|YP_003447309.1| pilus assembly protein [Azospirillum sp. B510] gi|288909276|dbj|BAI70765.1| pilus assembly protein [Azospirillum sp. B510] Length = 288 Score = 167 bits (424), Expect = 1e-39, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 113/235 (48%), Gaps = 18/235 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL + + + A+V G++ V I + + ++ DL G Sbjct: 1 MKLGTVFLGIAAVSMAVVGGLMVQAAVGARGAPAAVEIPQR-----RIAVAAADLPAGSF 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNG 119 + P + W AFPE + + V + + L G +VR + G+ I ++L R G Sbjct: 56 LQPMSVRWEAFPENALRPETL--VEGKDNIDSLVGAVVRDAVKAGEIISRDRLLSPRERG 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIR 175 L+++L G RAA++ ++ S G+I P DHVD+++ + ++ R+ +L N+R Sbjct: 114 FLAAVLAPGMRAASVAVNEVSGTAGLIFPGDHVDLLLTQEANDEGAARRLATETILDNLR 173 Query: 176 VIAIDHNID------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 V+A+D D + V T TLE+T QA+ + A ++ KL+L LRS+A Sbjct: 174 VLAVDQRTDFPKGEEPGQTARVARTVTLEVTAKQAQVISVAANLGKLTLSLRSLA 228 >gi|218661134|ref|ZP_03517064.1| pilus assembly protein [Rhizobium etli IE4771] Length = 205 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 90/205 (43%), Positives = 130/205 (63%), Gaps = 4/205 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I + +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEAEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLELTP 201 D I + + +VG+TATLELTP Sbjct: 181 DQQIQEKDDGSKAVVGTTATLELTP 205 >gi|149200846|ref|ZP_01877821.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] gi|149145179|gb|EDM33205.1| Flp pilus assembly CpaB [Roseovarius sp. TM1035] Length = 289 Score = 167 bits (423), Expect = 1e-39, Method: Composition-based stats. Identities = 51/248 (20%), Positives = 103/248 (41%), Gaps = 13/248 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVG 58 M+ + ++V A A +A + + Q E + + +++ ++ L G Sbjct: 1 MRAVFGLVLIVGLGLAGFAVYMAKNYIDGYQRQLEAERQQRAPVIETVDIFVATRALQYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 + + + AFP+ ++ +G + E + +PI K+ + G Sbjct: 61 EALDKDAVRLTAFPKTSLPEGVFKATEELFPKGETVARRALRRMEMNEPILAVKVTEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVT 168 G++S L +G RA + + ++S V G ++P D +D+ S+ Sbjct: 121 EVGITSQLERGMRAFAIKVDVTSGVSGFLRPGDTIDIYWTGSVGAGNMRTEGNSMGEVTK 180 Query: 169 VVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++ + +++IA+D D D ++ T T+ + P Q AL AQS +LSL L D Sbjct: 181 LIENGVKLIAVDQVADMDTSETVIARTVTVAVKPQQVAALAQAQSTGRLSLSLVGALDDT 240 Query: 228 PSSSEDSD 235 + + D Sbjct: 241 VAEVIEVD 248 >gi|315497466|ref|YP_004086270.1| flp pilus assembly protein cpab [Asticcacaulis excentricus CB 48] gi|315415478|gb|ADU12119.1| Flp pilus assembly protein CpaB [Asticcacaulis excentricus CB 48] Length = 304 Score = 167 bits (423), Expect = 2e-39, Method: Composition-based stats. Identities = 73/297 (24%), Positives = 131/297 (44%), Gaps = 47/297 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58 MK +R + + ++ V AL+ ++ ++ + + A + VL++ L VG Sbjct: 1 MKASRFVVVGIAAVAALLLALVVRGMIGGNGASNANASQKVAVEAPTVKVLVAARHLKVG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDD----------------------------------- 83 + L W A+PE+ + + + D Sbjct: 61 ERIAEADLAWKAWPEDGITESYFTDKPVTPVAPAEAKSAEDKALEEKVKNGAAQVADVAD 120 Query: 84 --VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISS 140 ++ M + G +VR +L +PI K+V GG ++ +L G RA + +++ S Sbjct: 121 KTLNPTRGMDAVLGGVVREEMLANEPIVARKVVRADAGGFMAVMLAPGMRAMAVPVTVES 180 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTV---TVVLSNIRVIAIDHNID--SDERVLVGSTA 195 GG I P D VD+V+ L T VL N++V+A+D ++ SD+ ++G+TA Sbjct: 181 TAGGFILPGDRVDIVVSTELQSNGQTTHVAKPVLRNVKVLAVDQTVEAKSDQPSVIGATA 240 Query: 196 TLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 TLE+ P + +AL A++ LSL+LRS AD+ S G ++ + + G Sbjct: 241 TLEVRPEEGEALAQAKAQGPLSLMLRSYADVGGPSGRVG--PSATGTGNKVVVYRNG 295 >gi|13471033|ref|NP_102602.1| hypothetical protein mll0900 [Mesorhizobium loti MAFF303099] gi|14021777|dbj|BAB48388.1| mll0900 [Mesorhizobium loti MAFF303099] Length = 308 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 57/247 (23%), Positives = 108/247 (43%), Gaps = 25/247 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV-----QTEEVITENPAK--FINVLISKG 53 M+ + I ++ VF ++ A V +T + P + F ++++K Sbjct: 1 MRGKAITMIGIAAVFGAISIFAADFWVKSQAKADAEEKTASIAAPVPPRIEFKTIVVAKA 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G + L + +P++++ G + +V PI +P+ L KL Sbjct: 61 PLRYGQELDRAKLIEIPWPQDSLPQGAFATIDGLLGEG---NRIVLSPIEVNEPVLLTKL 117 Query: 114 VDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------- 165 G LS++L G RA T+ + VGG + P D VDVV+ R E + Sbjct: 118 SGPNGRATLSNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQG 177 Query: 166 ------TVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 T +V+++ +V+++ D + + ++ T+E+T A+ + A++V LSL Sbjct: 178 AAGSTVTSEIVVADAKVLSVGQGADERQTTPQITNSVTIEVTTEGAQKVALARTVGTLSL 237 Query: 219 VLRSIAD 225 LRS ++ Sbjct: 238 SLRSASE 244 >gi|294676058|ref|YP_003576673.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] gi|294474878|gb|ADE84266.1| Flp pilus assembly protein CpaB [Rhodobacter capsulatus SB 1003] Length = 291 Score = 166 bits (422), Expect = 2e-39, Method: Composition-based stats. Identities = 55/252 (21%), Positives = 108/252 (42%), Gaps = 18/252 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVG 58 M++ + +V+ A +A +A + +S V+ + ++ E + ++V++ + LA G Sbjct: 1 MRMIVALVLVLGVALAGLAVYMAQQQISQFQVERDRLVAEQRNAPQLVDVVVLRRPLAYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAM------------QELDGVLVRVPILKGD 106 T L + ++ G V P E + Sbjct: 61 ERFTAADLGVIKMQVGHLPAGIFHSVATPQGAPEEAQAASVFPGGETRPRAALRAYDAYE 120 Query: 107 PIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 I K+ G + G+++ L RA T+ + ++ V G ++P D VDV ++ + Sbjct: 121 AILANKITAPGVDAGITASLSPNMRAFTISVDATTGVSGFLRPGDRVDVYWSGEVNGER- 179 Query: 166 TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 ++ +N+R+IAID + D+D E + T T E+TP Q +L AQ +L+L L + Sbjct: 180 VTKLIDTNLRLIAIDQSADADRAEETQLAKTVTAEVTPEQVASLTLAQGTGELTLSLVGM 239 Query: 224 ADLNPSSSEDSD 235 + + + D Sbjct: 240 QNTADPGAIEID 251 >gi|319779650|ref|YP_004130563.1| SAF domain protein [Taylorella equigenitalis MCE9] gi|317109674|gb|ADU92420.1| SAF domain protein [Taylorella equigenitalis MCE9] Length = 325 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 9/253 (3%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNILEWVAF 71 FA+ AGI+A + + + I N + I +++ GD+ G ++ +IL Sbjct: 11 AGFAIGAGILATFSANKYMKEKISQIEANHRQVMIPRIVAAGDIPEGTIIDSSILAVRDI 70 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131 PE V D P+ + ++G ++ P+ GDP+ S + G+RA Sbjct: 71 PENWVSS----DSLSPDEFERIEGKIITSPLTAGDPVLWAHTSTVSRRPFSEKVAVGRRA 126 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN--IDSDERV 189 TM + ++V G+I P D +D+ + R +L + V+A D + +D Sbjct: 127 VTMPVDTINSVSGLIVPGDLIDLYVSFKYRNRD-ITAPLLQGVLVLATDKESKLTNDGSE 185 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDVQEEGKEIQI 248 ST TL+ +P +A LVAA+ ++ LR+ D S D+ + I Sbjct: 186 REFSTVTLDTSPEEAAKLVAARQDGVITAFLRNPDDKKASQKGVKGDLASILGIATSGPI 245 Query: 249 IKAGVIVNKDGEG 261 ++ V +G Sbjct: 246 VRKKASVIYGDQG 258 >gi|254512153|ref|ZP_05124220.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] gi|221535864|gb|EEE38852.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium KLH11] Length = 290 Score = 166 bits (421), Expect = 3e-39, Method: Composition-based stats. Identities = 63/270 (23%), Positives = 113/270 (41%), Gaps = 17/270 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-------TEEVITENPA---KFINVLI 50 M+ + +++ A A +A ++ + + EE + A ++VL+ Sbjct: 1 MRSVFGLVLIIGVALAGGAVYMAREYITDNQAKLAQERKLREEALANAKAGLVPTVDVLV 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 S L G +T + V +PE + +G ++ + V + K + I Sbjct: 61 SNRSLKYGEQLTQEDIRVVQWPENAIPEGTFVEIAALFPDTRDNERFVLRAMEKDEAIMA 120 Query: 111 EKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTV 167 K+ G GL S LPKG RA + + ++S V G ++P D VDV R Sbjct: 121 VKVTAPGETAGLRSQLPKGMRAFAISVDVASGVSGFLRPGDTVDVYWTGAVRSEGRGEIT 180 Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +VL+NI ++A+D D + T T+ TP Q AL AQ+ ++SL L D Sbjct: 181 RLVLTNIELVAVDQTAGLDVTGTTIARTVTVAATPQQIAALAQAQNTGRMSLALVGAQDD 240 Query: 227 NPSSSEDSD---VWDVQEEGKEIQIIKAGV 253 + + D + ++E+ +++ V Sbjct: 241 KVAEVVEVDQRALLGIEEQAPAPVVVEKKV 270 >gi|116620531|ref|YP_822687.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223693|gb|ABJ82402.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 299 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 52/251 (20%), Positives = 108/251 (43%), Gaps = 19/251 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + + + + A A ++ R++ T T + V ++ +L VG + Sbjct: 1 MNKRFVGVLTFAFLVAAGASLVLYRVLINRPQATNAAPT-----MVQVALATRNLEVGTL 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + ++ +P V G V +++ G V I +PI +L +G GG Sbjct: 56 LKEDDVKLSDWP-GAVPIGATAQV------KDVLGRGVTTAIFAKEPIIESRLAPKGAGG 108 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIR 175 L++++P G RA + ++ V G + P HVD+++ + +L NI Sbjct: 109 GLAAMIPSGMRAVAVRVNEVVGVAGFVVPGMHVDILISGNTPGGDGNLGTLTKTLLQNIE 168 Query: 176 VIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V++ + D++ + ++ L +TP QA+ L A + + L+LR+ D S + Sbjct: 169 VLSAGQDFKKDNEGKPIMVQVVNLLVTPEQAEQLSLASNQTTIQLILRNPLDHEISKTSG 228 Query: 234 SDVWDVQEEGK 244 + + + G+ Sbjct: 229 TALRSLFTGGR 239 >gi|260463893|ref|ZP_05812089.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] gi|259030268|gb|EEW31548.1| Flp pilus assembly protein CpaB [Mesorhizobium opportunistum WSM2075] Length = 299 Score = 165 bits (419), Expect = 5e-39, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 104/238 (43%), Gaps = 23/238 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEE-----VITENPAKFINVLISKGDLAVGMVVT 62 I ++ VF ++ A V E+ +F ++++ L GM + Sbjct: 1 MIGIAAVFGAISIFAADFWVKSQADAQEKTASIAAPAPPKIEFKTIVVANAPLRYGMELD 60 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNGGL 121 L + +P++++ G + G +V PI +P+ L KL G L Sbjct: 61 RTKLIEIPWPQDSLPQGAFATIDGLLGEG---GRVVLSPIEVNEPVLLTKLSGPNGRATL 117 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------TVT 168 S++L G RA T+ + VGG + P D VDVV+ R E + T Sbjct: 118 SNMLTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTITSE 177 Query: 169 VVLSNIRVIAIDHNIDSDER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +V+++ +V+++ D + + ++ TLE+T A+ + A++V LSL LRS ++ Sbjct: 178 IVVADAKVLSVGQGADERQTAPQIANSVTLEVTTEGAQKVALARTVGTLSLSLRSASE 235 >gi|319943381|ref|ZP_08017663.1| SAF domain protein [Lautropia mirabilis ATCC 51599] gi|319743196|gb|EFV95601.1| SAF domain protein [Lautropia mirabilis ATCC 51599] Length = 339 Score = 165 bits (418), Expect = 6e-39, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 108/268 (40%), Gaps = 15/268 (5%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L+ + + + VA R V+ E + + ++V+++ L G +V Sbjct: 11 RHRNLLLMSAAMLCGGVAIYAGSRYVNEQVQAERERLAPVAQQMVDVVVANATLDKGEIV 70 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + + P E V + P L G + +P+ G+ + + Sbjct: 71 SGETMAIRSVPAEYVSSSVVT----PEQFDALVGQRLLLPMRPGEMLSTAAVSSAEQLVF 126 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVVLSNI 174 SS + G RA T+ + +++ GM++P D +D+++ +L N+ Sbjct: 127 SSRVKPGIRALTISVDEINSISGMLQPGDRIDLLLTARPPSASGHGEAEHDATVPLLQNL 186 Query: 175 RVIAIDHN----IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 V+A + + S+ T+E+TP QA+ L+ AQ +L+ VLR+ D P Sbjct: 187 LVMATGRQVRPGANDNGDDRSFSSVTVEVTPSQAQRLIVAQRAGRLTAVLRNPDDGMPMD 246 Query: 231 SEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 + D+ + + + V+ +D Sbjct: 247 AAAVDLRSLFPQPARPAVAPRKVVARQD 274 >gi|329847252|ref|ZP_08262280.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] gi|328842315|gb|EGF91884.1| flp pilus assembly protein CpaB [Asticcacaulis biprosthecum C19] Length = 311 Score = 165 bits (417), Expect = 8e-39, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 128/305 (41%), Gaps = 50/305 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58 MK +R + + V+ + A++ + +++ Q + + VLI+ +L G Sbjct: 1 MKASRYVVMGVAAIAAILLAFLVRGMIAGGGAQEAKATVDKTPAVATARVLIAARELKAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAM---------------------------- 90 ++ L W +P ++ +I D P Sbjct: 61 TRISEADLTWQEWPVASLNAAYIVDGGMPAGAPGMEGAAKPAADKPKSDVEEKVGDVTQA 120 Query: 91 -----------QELDGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISI 138 + G + R IL +PI K+V GG ++ +L G RA + +S+ Sbjct: 121 VADKIAPSPTKEAYVGGVAREDILANEPIIDAKIVRSDEGGFMAVMLQPGMRALAVPVSV 180 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRVIAIDHN--IDSDERVLV 191 + GG I P D VD+++ L T+ VL NIRV+AID + + D++ ++ Sbjct: 181 DNTAGGFILPGDRVDILVTHQLPSATGRGTIDSVQPVLRNIRVLAIDQSVAAEQDKQTVI 240 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSDVWDVQEEGKEIQIIK 250 G+TATLE++P + + A++ LSL+LRS AD PS + + E +++ + Sbjct: 241 GATATLEVSPGDGQVVTLAKASGTLSLMLRSYADAQGPSGAVTTSPTGGASEDLPVRVYR 300 Query: 251 AGVIV 255 G Sbjct: 301 NGQAT 305 >gi|297618080|ref|YP_003703239.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] gi|297145917|gb|ADI02674.1| Flp pilus assembly protein CpaB [Syntrophothermus lipocalidus DSM 12680] Length = 242 Score = 164 bits (416), Expect = 9e-39, Method: Composition-based stats. Identities = 61/251 (24%), Positives = 116/251 (46%), Gaps = 25/251 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ I ++ +F L A ++A R ++ + E P + V+++ D+ V Sbjct: 1 MKGSKKYWI-LAILFGLAATVLAYRYIAGVKARYE------PKNLVQVVVAATDIPKNSV 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++ P + + D + E+ G + I+ G+ I K++ Sbjct: 54 ITREKVKLELVPAQFAHPAAVRD------LDEVVGRVAASYIVAGEEILSAKIISDAEKT 107 Query: 121 --LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIR 175 L+ +P GKRA ++ ++ S V G+++P D VDV+ L+ + V V +L ++ Sbjct: 108 NKLAYAVPMGKRAVSVPVNAVSGVSGLVRPGDRVDVIATVELASGQENVAVTSFILQDVE 167 Query: 176 VIAIDHNIDSDERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 V+A+D N+D + V +T TL +TP +A+ LV A + L LR+ AD + Sbjct: 168 VLAVDQNLDETKPVPAAKEEAAPATTVTLAVTPEEARPLVLASEQGSIRLALRAPADHDR 227 Query: 229 SSSEDSDVWDV 239 + D+ Sbjct: 228 VMLPPVRLVDI 238 >gi|86159250|ref|YP_466035.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] gi|85775761|gb|ABC82598.1| Flp pilus assembly CpaB [Anaeromyxobacter dehalogenans 2CP-C] Length = 307 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E V+++ DL + ++L V +P NV +G D +L Sbjct: 48 VETRTAAARVSTTPVVVATIDLPEATTLRADVLTVVQWPSANVPEGAASDPA------KL 101 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +VR ++KG+P+ +L G GL+++LP G RAA + ++ V G I P D V Sbjct: 102 VDRVVRARVIKGEPVIESRLAAADAGHGLAAILPPGMRAAAVRVNDVVGVSGFIHPGDSV 161 Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203 DV++V + ++L N+ V+A+ ++ + E+ L + ATL + Q Sbjct: 162 DVIVVMRPESNGNSNPAYFSKIILQNVPVLAVGKELERNERSLEKSLPATVATLMVDSEQ 221 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ L AQ+ + L LRS D + + + Sbjct: 222 SEKLALAQTKGNILLTLRSGIDRELVDTTGVNPAGL 257 >gi|325108089|ref|YP_004269157.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324968357|gb|ADY59135.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 418 Score = 164 bits (416), Expect = 1e-38, Method: Composition-based stats. Identities = 59/248 (23%), Positives = 113/248 (45%), Gaps = 20/248 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ ++ + FA+ G+IAM V Q ++ + + VL++ D++ G++ Sbjct: 1 MKMKTILVLA----FAVGCGLIAMVGVQQMIAQQSN---KDQNQTVEVLVAAQDISPGVL 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + P E V + + +E + VP++ GD IR KL RG Sbjct: 54 LNQANCAFKKLPVEGVPSDAVR------SKEEYAERGLLVPVMAGDIIRKSKLGARGEIA 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIRV 176 S+ +P G R ++ ++ + G+++P D VD+ + + + ++L I V Sbjct: 108 ASASIPAGMRTVSIQVNDTKTHSGLLQPGDRVDLQVTYEVRTSEGFRVTKTAILLEYIEV 167 Query: 177 IAID--HNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 A D N+++ E + + TL +TP QA + A + +L ++RS AD + + E Sbjct: 168 FASDAFRNLEAGESKEIKAKNITLLVTPDQANFIQLANTKGELVPIMRSRADSHLITPEG 227 Query: 234 SDVWDVQE 241 D + E Sbjct: 228 VDAQVIAE 235 >gi|83950065|ref|ZP_00958798.1| CpaB family protein [Roseovarius nubinhibens ISM] gi|83837964|gb|EAP77260.1| CpaB family protein [Roseovarius nubinhibens ISM] Length = 281 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 13/240 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPNIL 66 ++V A A +A ++ + + N K ++V ++K LA G +T + Sbjct: 1 MIVGIGLAGFAVYMAKSVIQGYRTELNSARAANQPAIKTVDVYVAKRALAYGDRLTKEDV 60 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLL 125 V +P + +G V + + V + K + + K+ G + G+ + L Sbjct: 61 VQVKYPARALPEGVFQTVEDLFPEGQKEFRTVLRAMEKYEALLGVKVTAPGEDAGILTKL 120 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---------SLSERKPTVTVVLSNIRV 176 +GKRA + + +S V G ++P D VDV ++L+ + + Sbjct: 121 ERGKRAFAIKVDTTSGVAGFLRPGDRVDVYWTGNTGRGGLRTEGDSTGDVTKLILTGVNL 180 Query: 177 IAIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 IA+D + D ++ T T+ ++P + AL AQ+ KL+L L + + + D Sbjct: 181 IAVDQSSNDQTTGAILARTVTVAVSPQEVAALAQAQATGKLTLSLLGTKEDTIAEVIEVD 240 >gi|116623254|ref|YP_825410.1| SAF domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116226416|gb|ABJ85125.1| SAF domain [Candidatus Solibacter usitatus Ellin6076] Length = 300 Score = 164 bits (415), Expect = 1e-38, Method: Composition-based stats. Identities = 59/249 (23%), Positives = 105/249 (42%), Gaps = 17/249 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +M + VS V+AL+ RL A V+++ L G Sbjct: 3 MDRRFVMVMGVSLVWALMVSAAFFRLAGGGG-------RTRAASRKQVVVATRPLPAGST 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + ++ + PE+ G V +++ V I +P+ +L +G+G Sbjct: 56 LDRDAVKLRSVPEDVFPAGAFSRV------EDVLERPVISAIQPEEPVVEARLAVKGSGA 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVIA 178 GL ++P G RA ++ ++ V G + P VDV++ R T VL NI V++ Sbjct: 110 GLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLS 169 Query: 179 IDHNIDSDER--VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 I +D R ++ TL +TP +A+AL A + + LVLR+ D + + + Sbjct: 170 AGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRL 229 Query: 237 WDVQEEGKE 245 ++ E Sbjct: 230 HELYGAAAE 238 >gi|27378603|ref|NP_770132.1| pilus assembly protein [Bradyrhizobium japonicum USDA 110] gi|27351751|dbj|BAC48757.1| blr3492 [Bradyrhizobium japonicum USDA 110] Length = 329 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 70/263 (26%), Positives = 114/263 (43%), Gaps = 16/263 (6%) Query: 1 MKLTRLMGIVVSGVFALVA-GIIAMRLVSPHHVQTEEVIT-ENPAKFINVLISKGDLAVG 58 M + I++ + A A G+IA + P V P + ++ L+ G Sbjct: 13 MSSALRLSIIIVLLLATAAFGLIAYNMNLPKQVPVAVTEQGPAPPSTVGYFVAARPLSRG 72 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRG 117 + + E + G I + P+A L G LVR + G PI L+ ++ R Sbjct: 73 TLARDEDFAVRSALPERLPAGAI--LETPDAKAGLTGSLVRKFVEAGSPITLQDVLRPRD 130 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSN 173 G L+S+L RA ++ + S V G+I+P DHVDV++ + + P VVL N Sbjct: 131 RGFLASVLAPDSRAISIKVDEESGVSGLIRPGDHVDVLLTQVFEKADPARRALSEVVLGN 190 Query: 174 IRVIAIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL- 226 +RVIAID I R + T +LEL P Q K + A+ + +SL +R+ + Sbjct: 191 VRVIAIDQEIVQGGRTVSSLAGKQAQTVSLELAPDQVKKITVAKQIGTISLAVRAAVEQW 250 Query: 227 NPSSSEDSDVWDVQEEGKEIQII 249 + + + DV E + Sbjct: 251 DTADTGAMSSCDVSPEIARQNAV 273 >gi|323700358|ref|ZP_08112270.1| Flp pilus assembly protein CpaB [Desulfovibrio sp. ND132] gi|323460290|gb|EGB16155.1| Flp pilus assembly protein CpaB [Desulfovibrio desulfuricans ND132] Length = 273 Score = 163 bits (414), Expect = 2e-38, Method: Composition-based stats. Identities = 61/247 (24%), Positives = 114/247 (46%), Gaps = 15/247 (6%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 L+ I +S A++AG+I + + + EN + +K DL G+ +T Sbjct: 6 RALVQITLSLFLAVIAGVIIFKWTNGVKQAAPTAVVENTVPVVV---AKTDLGRGVKLTE 62 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121 ++LE F +++ G +V ++++G ++ + GD + KL D+ GG+ Sbjct: 63 DMLEIRKFTQDSRPSGAFAEV------KQVEGRVLNQTVGMGDALTPLKLADKSIMGGGV 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAID 180 S+L+ GKRA + + + G ++P D VDV++ ++ KP +VL I+VIA Sbjct: 117 SALITPGKRAMAVKGNEVMGLSGFVRPGDRVDVIVSLTVGRNEKPVTKLVLEQIKVIATG 176 Query: 181 HNI---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + + + +V TLELTP +++ L A + L LR+ D + + V Sbjct: 177 TQLTPPNEEGKVASVGVYTLELTPAESERLALASTQGTLHFALRNEQDNADVRTIGTTVP 236 Query: 238 DVQEEGK 244 + Sbjct: 237 QTLAALR 243 >gi|51245388|ref|YP_065272.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] gi|50876425|emb|CAG36265.1| hypothetical protein DP1536 [Desulfotalea psychrophila LSv54] Length = 285 Score = 163 bits (413), Expect = 2e-38, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 115/263 (43%), Gaps = 19/263 (7%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTP 63 RL +V++ V A + + +S +V V+ + P + ++ ++ D++ G + Sbjct: 6 RLTFLVIAVVIAFSVSFVVYKKMSTPNV----VMEQKPGQATTDIAVAVKDMSRGSKIGS 61 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGL 121 ++ + +E + G D ++++ G +V P+ +PI L + GGL Sbjct: 62 EDVQMATYLQETLPSGHFTD------LEQVVGRIVLSPLTTTEPILNSDLAPQDLTKGGL 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAI 179 ++++ KRA + + V G + P VDV++ + R VL NI V+++ Sbjct: 116 AAVITPTKRAMAIKVDNVIGVAGFLHPGHLVDVLVSIEKPGDTRSQITKTVLQNILVLSV 175 Query: 180 DHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED-SDV 236 D++V + TLE+ + + L A + ++ L LR +D+ P + + Sbjct: 176 GTLAQESADKKVHKVTVVTLEVDLEEGEKLALAVNEGRIQLALRGYSDVEPVLTRGITKT 235 Query: 237 WDVQEEGKEI-QIIKAGVIVNKD 258 ++ ++ + +K G K Sbjct: 236 SLLKSYSPDVFKTVKGGKTAVKK 258 >gi|328953762|ref|YP_004371096.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] gi|328454086|gb|AEB09915.1| Flp pilus assembly protein CpaB [Desulfobacca acetoxidans DSM 11109] Length = 272 Score = 163 bits (412), Expect = 3e-38, Method: Composition-based stats. Identities = 58/232 (25%), Positives = 105/232 (45%), Gaps = 12/232 (5%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G A + S + + + + ++A G V+ P +L+ V P+E+V Sbjct: 17 GGFAAYIASGWLKARARPAARDSVAMMPAVAAARNIAPGSVLIPELLKVVQLPKEHVAAD 76 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISI 138 D ++ L+G + R I+ G+ I+ +L +G GG++ ++ KRA T+ + Sbjct: 77 AATD------LKALEGRVTRQLIVAGEVIQEHELAPKGAPGGMAGIIGNDKRAVTIKVDE 130 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAIDHNIDS---DERVLVGS 193 +S V G I P + VDV++ +E P +VL N+ V+ +I+ ER V Sbjct: 131 ASGVAGFIVPGNRVDVLLSLDRNEFKNDPVTQIVLQNLPVLGTGQDIEQQKAGERPKVVP 190 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 T TLE+TP + + L A ++L LR + + + V + K+ Sbjct: 191 TVTLEVTPEEGERLALAAKEGTITLALRGWTEKAAIPTAGARVSALLTPEKK 242 >gi|197123318|ref|YP_002135269.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] gi|196173167|gb|ACG74140.1| Flp pilus assembly protein CpaB [Anaeromyxobacter sp. K] Length = 307 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 54/216 (25%), Positives = 96/216 (44%), Gaps = 16/216 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E V+++ DL + ++L V +P NV +G D +L Sbjct: 48 VETRTAAARVSTTPVVVATIDLPEATTLRADVLSVVQWPSANVPEGAASDPA------KL 101 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 +VR ++KG+P+ +L G GL+++LP G RAA + ++ V G I P D V Sbjct: 102 VDRVVRARVIKGEPVVESRLAAADAGHGLAAILPPGMRAAAVPVNDVVGVAGFIHPGDSV 161 Query: 153 DVVMVRSLSERKPT-----VTVVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQ 203 DV++V + ++L N++V+A+ + + E+ L + ATL + Q Sbjct: 162 DVIVVMRPETNGNSNPAFFSKIILQNVQVLAVGKELGRNERSLEKSLPATVATLMVDSEQ 221 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 ++ L AQ+ + L LRS D + + + Sbjct: 222 SEKLALAQTKGSILLTLRSGIDRELVDTTGVNPAGL 257 >gi|218513094|ref|ZP_03509934.1| pilus assembly protein [Rhizobium etli 8C-3] Length = 202 Score = 162 bits (411), Expect = 4e-38, Method: Composition-based stats. Identities = 87/202 (43%), Positives = 128/202 (63%), Gaps = 4/202 (1%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+ + V+ V A +AG++AMR+ V T+ +NVL+S G+LAVG Sbjct: 1 MKPARLIILAVAVVAAGLAGLLAMRMAGSGGVVTQVQSVIEKEPTVNVLVSSGNLAVGQR 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + W+A+P+ V G I ++ +P+A+++L G +VR+PI +G+PIR EK+ D + Sbjct: 61 LEEGSVHWMAWPQGGVVPGLITEIEKPDAIKDLQGAVVRLPIFEGEPIRPEKVADSSSRI 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIAI 179 LSSLLP GKRA +IS+++ GG I PND VDV+MVR +E K VLSN+RV+AI Sbjct: 121 LSSLLPAGKRAVATEISVATGAGGFILPNDRVDVIMVRKGTEANKLITETVLSNVRVLAI 180 Query: 180 DHNIDSDE---RVLVGSTATLE 198 D I + + +VG+TATLE Sbjct: 181 DQQIQEKDDGSKAVVGTTATLE 202 >gi|329900777|ref|ZP_08272581.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] gi|327549366|gb|EGF33934.1| SAF domain protein [Oxalobacteraceae bacterium IMCC9480] Length = 323 Score = 162 bits (410), Expect = 4e-38, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 104/236 (44%), Gaps = 11/236 (4%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + V+ + A ++A +S Q + I V+++KGDL G V++ + + Sbjct: 16 LVLGVALTIGVGAALLARSFLS---DQIASIEARGKGPTIPVVVAKGDLNKGTVLSADNV 72 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 P E + P+ +DG + + G+ + + + S+ L Sbjct: 73 AVRQIPREFAHSASV----FPDQFARIDGQPIAYGLKSGESVMWGLMEGKKVPTFSARLE 128 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 G RA T+ + +++ G+++P D +D+++ +K +L ++V+A D Sbjct: 129 AGHRAMTVPVDEINSISGLLEPGDSIDLIVTVDHGGKK-ITFPLLQAVQVMATGQRAVDD 187 Query: 187 ERV---LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 R ST TL TP QA+ ++ A+ K++ +LR+ AD P + D+ + Sbjct: 188 PRTGERRQFSTVTLNTTPEQAQNVIVAREAGKITALLRNPADQAPMAGTRGDLAAL 243 >gi|294139869|ref|YP_003555847.1| Flp pilus assembly protein CpaB [Shewanella violacea DSS12] gi|293326338|dbj|BAJ01069.1| Flp pilus assembly protein CpaB, putative [Shewanella violacea DSS12] Length = 288 Score = 161 bits (409), Expect = 7e-38, Method: Composition-based stats. Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + RLM V F +AG+I + L + + TEN +L++K + G Sbjct: 1 MTVKRLMYFSV---FISLAGLIGLYLSISAPQKQINIKTENVRH--EILVAKQLIKSGQR 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ EW A E+ + + + + + ++ G + L + GG Sbjct: 56 FSASLFEWQALNEDQLTNLVDYIDRDKFDILKFNDSVLVSSFTAGHIMSLSDFLKPEEGG 115 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 LS L G RA ++ + +A G++ P D VDV++ R + V + Sbjct: 116 FLSVSLRPGYRAVSVPVDQVTANSGLVGPGDFVDVLLLASQEQELRTRGNDTQSLYVKTI 175 Query: 171 LSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLSLVL 220 N+RV+A +H + ++ + S TLE+ P QA ++ A + L+LVL Sbjct: 176 ARNVRVLAFNHAVKVEQYIAAQKEYKGFIPDDSAVTLEVLPKQANRIILANQLGILTLVL 235 Query: 221 RSIADL-NPSSSEDS-DVWDVQEEGKEIQ 247 RS D + ++S+D ++ D+ + K +Q Sbjct: 236 RSNNDSVDEANSQDQINIADIFPDIKRVQ 264 >gi|261251599|ref|ZP_05944173.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260938472|gb|EEX94460.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 279 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 63/271 (23%), Positives = 115/271 (42%), Gaps = 27/271 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + L A IA+ L++P Q+E+ F VL++K + VG Sbjct: 1 MTAKRLMLLSLI----LSAVGIAILLLNPSKPQSEQRQAAAEV-FKRVLVAKQGVVVGQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDRGNG 119 T N+ +W + E+ + ++D + + + +L + I G + + +G Sbjct: 56 YTLNMFQWKSVSEQELN-NYLDFISEEEFSRLDLKPGIAHTAIQSGQVMSSDDFETPASG 114 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTV 169 ++ + G RA ++ + +A G ++P D VD++++ S E VT Sbjct: 115 ISMAFKVQSGHRAISVPVDAVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTT 174 Query: 170 VLSNIRVIAIDHNID----SDERVLVG------STATLELTPMQAKALVAAQSVAKLSLV 219 + ++RV+A + D R G S+ +LE+TP QA +V A + KL+L Sbjct: 175 IAIDVRVLAFNQYADPQDFQKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLS 234 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 LR ++ E V Q+ Sbjct: 235 LRGAGEMISDVDEKYTVTSTLINPDSKQVAP 265 >gi|302037440|ref|YP_003797762.1| pilus assembly protein CpaB [Candidatus Nitrospira defluvii] gi|300605504|emb|CBK41837.1| Pilus assembly protein CpaB (modular protein) [Candidatus Nitrospira defluvii] Length = 403 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 65/256 (25%), Positives = 118/256 (46%), Gaps = 24/256 (9%) Query: 1 MKLTR--LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 M R L+ + + G+ L + A + + QT + E ++ I + ++ DLA G Sbjct: 1 MTPQRRALIVVALGGLIGLATSLWAYQWLQDVTEQTR-LDMEAKSRTIPIAVAAADLAWG 59 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 V+ + + V FP + V +G + + L G +V + + + +PI KL Sbjct: 60 AVLADDAVRMVPFPADTVPEGHF------ASAETLKGRVVIMDVKQHEPILESKLAPATV 113 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNI 174 +GG++++ KRA + + AVGG IKP D VDV+ R P VVL N+ Sbjct: 114 TSGGVAAVTHPEKRAVAVKVDDVVAVGGFIKPGDRVDVLTTVRRPGKTDDPVTKVVLENV 173 Query: 175 RVIAIDHNID-----------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 RV+A+ + + + ++ V S TLE+ P +A+ L A + K+ L LR+ Sbjct: 174 RVLAMGQDTERAAQTDKAAKNQETKLSVPSVMTLEVAPDEAEKLALASTEGKVQLALRNP 233 Query: 224 ADLNPSSSEDSDVWDV 239 + ++ + + + Sbjct: 234 QSVTAVATTGATISSL 249 >gi|85705149|ref|ZP_01036249.1| CpaB family protein [Roseovarius sp. 217] gi|85670471|gb|EAQ25332.1| CpaB family protein [Roseovarius sp. 217] Length = 289 Score = 161 bits (407), Expect = 1e-37, Method: Composition-based stats. Identities = 51/230 (22%), Positives = 98/230 (42%), Gaps = 13/230 (5%) Query: 19 AGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 A +A + + Q E + +++ ++ + G +T + +AFP++++ Sbjct: 19 AVYMAKTYIDGYQQQLALERQQRAPNIETVDIYVANQLIKYGEPLTTEAVRLIAFPKDSL 78 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMD 135 +G + + K +PI K+ G G++S L +G RA + Sbjct: 79 PEGAFSSTEELFPSGASVVRKALRRMEKNEPILAVKVTKPGEEAGITSQLERGMRAFAIK 138 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSD 186 + ++S V G ++P D VD+ S+ ++ + +++IA+D D D Sbjct: 139 VDVTSGVSGFLRPGDTVDIYWTGSIGAGNLRTEEDSTGEVTKLIDTGVKLIAVDQVADMD 198 Query: 187 -ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +V T + +TP Q AL AQS +LSL L +D + S + D Sbjct: 199 MTEAVVARTVAVAVTPNQVAALAQAQSTGRLSLSLVGASDDTVAQSIEVD 248 >gi|84687278|ref|ZP_01015158.1| CpaB family protein [Maritimibacter alkaliphilus HTCC2654] gi|84664711|gb|EAQ11195.1| CpaB family protein [Rhodobacterales bacterium HTCC2654] Length = 274 Score = 160 bits (406), Expect = 2e-37, Method: Composition-based stats. Identities = 53/231 (22%), Positives = 96/231 (41%), Gaps = 8/231 (3%) Query: 13 GVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 A A +A + + E + + + K +A G +T + Sbjct: 3 VGLAGFAVYMARDYIGNYQAALEQERAARAQMVQTAEIYVVKESVAYGDRITDENIRLTR 62 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGK 129 FP + + +G + E V + K + + K+ + G + G+++ L G Sbjct: 63 FPVDAIPEGAFKTEEELFPQGEKRYRTVLRAMEKDEALLAVKVTEAGADAGVAARLASGM 122 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----KPTVTVVLSNIRVIAIDHNIDS 185 RA + + ++S V G ++P D VD+ S + ++ +NIR+IAID D+ Sbjct: 123 RAFAIRVDVASGVSGFLRPGDKVDIYWTGRGSSDSVTSQEVTKLIQTNIRIIAIDQMADT 182 Query: 186 DER-VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 D V T T+E TP Q AL AQ+ +++L L D + + + D Sbjct: 183 DRTAPTVARTVTIEATPEQVAALAQAQATGRMALSLVGAQDDTVAEAVEID 233 >gi|323493504|ref|ZP_08098626.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323312327|gb|EGA65469.1| Flp pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 280 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 62/271 (22%), Positives = 117/271 (43%), Gaps = 27/271 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + L A I++ L+S + ++ F VL++K + +G Sbjct: 1 MTAKRLMLLSLV----LSAVGISILLLSQSEQKNDQQQAAAET-FKRVLVAKQKVDIGQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPN-AMQELDGVLVRVPILKGDPIRLEKL-VDRGN 118 T N+ EW ++ + D ++D + + ++Q+ + IL G + +G Sbjct: 56 YTLNMFEWKQVSQQEL-DNYLDYISREAFSVQQFTPGIAHSEILAGQVMSAGDFSTPKGG 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTV 169 L+ + G RA ++ + +A G ++P D VD++++ S E VT Sbjct: 115 VSLAFKVRNGYRAISVPVDSVTANSGFVQPGDKVDILLLGSEVEELKKYDNKVSGLYVTT 174 Query: 170 VLSNIRVIAIDHNIDSD----ERVLVG------STATLELTPMQAKALVAAQSVAKLSLV 219 + ++RV+A + D+D +R G S+ +LE+ P QA +V A + KL+L Sbjct: 175 IAKDVRVLAFNQYSDADNFQKKRSAYGADLPDNSSVSLEVNPEQATQIVLANQIGKLTLS 234 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 LR + + V Q + Q+ Sbjct: 235 LRGAGEDDSDDQSIYTVKSTQINPESKQVAP 265 >gi|149915643|ref|ZP_01904169.1| CpaB family protein [Roseobacter sp. AzwK-3b] gi|149810535|gb|EDM70378.1| CpaB family protein [Roseobacter sp. AzwK-3b] Length = 290 Score = 160 bits (405), Expect = 2e-37, Method: Composition-based stats. Identities = 56/249 (22%), Positives = 107/249 (42%), Gaps = 14/249 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT--EEVITENPAKFINVLISKGDLAVG 58 M+L + +V+ A A +A + + Q E + + VL++K L G Sbjct: 1 MRLVFGLVLVLGLGLAGFAVYMAKSYIQGYQNQLALERAQRAPQIETVEVLVAKTPLKYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 + P+ + V FP++ + +G + E + VR + + I K+ G Sbjct: 61 QKLKPDAVRLVKFPKDALPEGVFMTMDALFPKGEQEPRAVRRAMEVNEAIMAVKVTAPGE 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER----------KPTV 167 + G+SS L +G RA + + ++S V G ++P D VDV + Sbjct: 121 DAGISSQLAQGMRAFAIKVDVASGVSGFLRPGDRVDVYWTGQVRGGSDVRTEGNSMGDVT 180 Query: 168 TVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 ++ + +++IA+D D + + ++ T T+ P Q AL AQ+ +LSL L + Sbjct: 181 KLIETGVQLIAVDQISDENTTQAIIARTVTVAARPQQVAALAQAQATGRLSLSLVGTDEE 240 Query: 227 NPSSSEDSD 235 + + + D Sbjct: 241 SVAEVIEVD 249 >gi|115358170|ref|YP_775308.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] gi|115283458|gb|ABI88974.1| Flp pilus assembly CpaB [Burkholderia ambifaria AMMD] Length = 342 Score = 159 bits (403), Expect = 3e-37, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 17/236 (7%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V + AGI A L +V + V ++ DL G+++ N L W Sbjct: 8 AVLIIAAGIGAFIL-RQLYVSASTPPPPGNTADVRVRVAAADLPEGLLLRDNDLAWKPMA 66 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRA 131 V G + +L G L+R + G PIR + ++ G L++ L G RA Sbjct: 67 RAQVPAGAFVESQPG---ADLKGALLRSRVEAGAPIRADNVISAGAPDFLAAALQPGMRA 123 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182 ++ + S G+I+P D VDVV+ + + T V+ RV+A+ Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARVLAVGSEFQRA 183 Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + + + T TLE+ P A+ ++ A + LSL LRS A + + D Sbjct: 184 KGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQAAGGD 239 >gi|326797326|ref|YP_004315146.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] gi|326548090|gb|ADZ93310.1| Flp pilus assembly protein CpaB [Marinomonas mediterranea MMB-1] Length = 315 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 64/277 (23%), Positives = 113/277 (40%), Gaps = 37/277 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK + + + + +FAL ++ L+ S +T + + VL++ L G Sbjct: 1 MKASSVFFVSGALIFALGGALLGSALLTSEPPPKTVTKVVPKKPNYRAVLVASNTLRPGD 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + +EW A ++ D F + + +L G V PI G + + LV G Sbjct: 61 FMNATSIEWRAADKQYPEDAFF--LKGLDEKSQLYGATVTQPIPAGTELESDLLVSPGEP 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165 G ++S+L G RA + + ++ G+I D VDV++ + Sbjct: 119 GFIASVLKPGMRAVAIPADVVTSNAGLISGGDRVDVILSLKRDYEQGADNNPLATIKLPK 178 Query: 166 -TVTVVLSNIRVIAID----------HNIDSDERVLVGS-------TATLELTPMQAKAL 207 +L N+RV++++ ++S + S T TLE+ P + L Sbjct: 179 LASQTLLRNVRVLSLNGTLDAFREKVQKVESKKEKKTDSNKRKSYETVTLEVLPKDVERL 238 Query: 208 VAAQSVAKLSLVLRSI--ADLNPSSSEDSDVWDVQEE 242 A+ V L L LRS+ DL S+S + D + Q E Sbjct: 239 TVAREVGILQLALRSVQGQDLALSTSPEKDSKESQSE 275 >gi|144898050|emb|CAM74914.1| Flp pilus assembly protein CpaB [Magnetospirillum gryphiswaldense MSR-1] Length = 288 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 64/275 (23%), Positives = 117/275 (42%), Gaps = 23/275 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ ++V+ + A + ++A R V ++ + VL+ D+A G Sbjct: 1 MRPLAIVLVIVAVLAAGLTALLAKRWTDKQSTARPTVAADS----VEVLVLARDVATGSA 56 Query: 61 VTPNILEWVAFPEENVFDG-FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118 ++ L + +P V G F+ + G + R P+ +G+P G+ Sbjct: 57 LSDADLRYENWPA--VNAGRFMTRKDGDDPKARAIGAVARRPLSEGEPFTPSATFTRDGS 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165 G L+ +L G RA ++ IS +SAV G + P D VDVV+ Sbjct: 115 GILAGMLAPGMRAVSVAISNASAVSGFVVPGDRVDVVLAADFQRADSEAAGKGGGAIVRY 174 Query: 166 TVTVVLSNIRVIAIDHNID--SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 VL++++V+A+D D + G TATLE++P QA+ LV A + +LSL+LR + Sbjct: 175 AAETVLADVKVLAVDQQFSKGKDGPTIQGKTATLEVSPDQAEILVTAGLMGQLSLILRGV 234 Query: 224 ADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 + + + ++ + G Sbjct: 235 GPQDAGNQTKRPFTADTQASAAMRALAGGSAKPAA 269 >gi|225181998|ref|ZP_03735430.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225167283|gb|EEG76102.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 229 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 59/234 (25%), Positives = 109/234 (46%), Gaps = 18/234 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + ++S + ALVA ++ Q+ ++ A +L+++ ++ Sbjct: 1 MKGKKF--FLLSLILALVAAGAIFHYLNEMERQS-----KSAANLTTILVAREEIPARTR 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 ++ ++ P++ + I + ELDG R ++ G+ + +LV ++ Sbjct: 54 LSASMFTTAEVPQDAIHGDAIRETS------ELDGAYARERLVAGEQVLSARLVFEQSET 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-VTVVLSNIRVIA 178 GLS + G RA T+ ++ S V G I P D+VD ++ +E + T VV S I+V+A Sbjct: 108 GLSYKVSDGHRAVTVPVNNVSGVAGYILPGDYVDAIVTIESTEDEDTVTKVVESKIKVLA 167 Query: 179 IDH-NIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIADLNPSS 230 ++ D L+ T TL+ TP A A++ A L LVLR + + N + Sbjct: 168 SGQYTVEQDREQLIVETVTLD-TPADAVTAIIQASERGSLRLVLRPVEESNDRA 220 >gi|332284570|ref|YP_004416481.1| putative secreted protein [Pusillimonas sp. T7-7] gi|330428523|gb|AEC19857.1| putative secreted protein [Pusillimonas sp. T7-7] Length = 326 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 55/233 (23%), Positives = 100/233 (42%), Gaps = 13/233 (5%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L ++++GV L A A + + + + + + + +++ DL G + Sbjct: 7 NRSLAMLLLAGVAGLGAAWAAKQHIDG---KVQLLEAQARTPMVERIVAAYDLPAGTRLG 63 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P L FP G + P EL G ++R P+ GD + + + S Sbjct: 64 PEHLALRHFPANVASSGSL----APGRFTELTGTMLRAPLRGGDAVLEVHTTGQDHAAFS 119 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID-- 180 S L G+RA +M + ++V G+++P D +D+ + +R+ +L + V+A D Sbjct: 120 SHLSAGRRAISMPVDAINSVSGLLQPGDLIDLYVSFEY-QRRHITAPLLQGVLVLATDAN 178 Query: 181 -HNIDSDERVLVGS--TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + GS T TL+ +P A LVAA+ ++ VLR D+ S Sbjct: 179 TQFVQDAGHASRGSYATVTLDASPEDAVKLVAARQGGTITAVLRPPQDVASSQ 231 >gi|197106488|ref|YP_002131865.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] gi|196479908|gb|ACG79436.1| Flp pilus assembly protein CpaB [Phenylobacterium zucineum HLK1] Length = 310 Score = 159 bits (402), Expect = 4e-37, Method: Composition-based stats. Identities = 64/244 (26%), Positives = 113/244 (46%), Gaps = 7/244 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ ++ + S V L A ++A + V P + A + V+++ ++ G Sbjct: 1 MRVVTIVSLAASAVLGLGALVVA-KTVLPGAGAAKGAAVVQEAPGVPVVVAAREIKYGDK 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + P +L V P V G V Q + + + + +P+ K+ G+ Sbjct: 60 LVPGMLTIVNAPAGLVPQGAFQTVDQVLSADKGGPPVALTRLAAREPVLPTKISGPGSRP 119 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNIR 175 +S+ + +G RA T+ + SS VGG P D VDVV++R L+ P VV+ N R Sbjct: 120 TVSAEVGEGMRAYTLKVDASSGVGGHALPGDRVDVVLLRDLTPSGPDRNFISYVVVQNAR 179 Query: 176 VIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+ +D N D + E+ STATLE++ +++ L A ++ LSL LR + + + Sbjct: 180 VLGVDLNADPTSEKPATPSTATLEVSVEESQKLAIAATLGTLSLALRRSGEAEIADAGPL 239 Query: 235 DVWD 238 D Sbjct: 240 RTGD 243 >gi|149912018|ref|ZP_01900612.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] gi|149804917|gb|EDM64951.1| Flp pilus assembly protein CpaB [Moritella sp. PE36] Length = 288 Score = 158 bits (401), Expect = 5e-37, Method: Composition-based stats. Identities = 61/269 (22%), Positives = 110/269 (40%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RL+ + V + G+I + V + ++ K VL+S D+ +G Sbjct: 1 MNAKRLVYLSVCM---SLLGLIWLFFSLSAPVNSTP--KQDTVKTYEVLVSTQDVVIGRP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ W E +V D ++Q L + + G + + GG Sbjct: 56 YSASLFAWKTVDESSVRDRIDFIDKANFSIQALKNTVAAADFVTGQILSPSDFLKPEQGG 115 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 LS +L RA ++ + +A G+I P DHVDV++ R + V + Sbjct: 116 FLSVMLRPNYRAVSIPVDEVTANSGLIGPGDHVDVLLLASKSQELRSRGNETQSLYVKTI 175 Query: 171 LSNIRVIAID---HNIDSDERVL-------VGSTATLELTPMQAKALVAAQSVAKLSLVL 220 N+RV+A + E+ ST TLE++P+QA + A + LS+VL Sbjct: 176 AQNVRVLAFNDALQLARYMEKQKHNKGVIPDNSTVTLEVSPLQANQITLANQLGTLSMVL 235 Query: 221 R--SIADLNPSSSEDSDVWDVQEEGKEIQ 247 R + + + + +V D+ K++Q Sbjct: 236 RSKNSQETDSAVIPAVNVDDILPAIKQVQ 264 >gi|283779854|ref|YP_003370609.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] gi|283438307|gb|ADB16749.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] Length = 372 Score = 158 bits (401), Expect = 6e-37, Method: Composition-based stats. Identities = 53/247 (21%), Positives = 108/247 (43%), Gaps = 20/247 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M++ L+ I ++ LVA I +++ + +L++ D+ + Sbjct: 1 MRMKSLILIFIALGCGLVASIGISQVMERGGSGAAPA-----MEMEQILVALADIDIDAK 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ +P+ V +G + ++ E++ + KG+PI L K+ D+ N Sbjct: 56 LNAENVQLEEWPKSKVPEGAVR------SLDEVEAKFAQQRFFKGEPILLAKISDQ-NVN 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178 +P+G R + + + + I P D VDV++ SE ++ +L N+RV A Sbjct: 109 PMIRIPEGYRVMPVKVDDETVLKA-ISPGDRVDVMVFLRRSEEIKQTATYTILRNVRVFA 167 Query: 179 IDHNIDSD----ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 ++ N + D + + T +L + P Q++ L A + K+ L +R D + E Sbjct: 168 VNSNTERDLETKGQDVNARTVSLIIKPQQSRELAVASQIGKIILTMRRP-DETDEAGEGE 226 Query: 235 DVWDVQE 241 DV + E Sbjct: 227 DVTPITE 233 >gi|319783875|ref|YP_004143351.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169763|gb|ADV13301.1| Flp pilus assembly protein CpaB [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 301 Score = 158 bits (400), Expect = 6e-37, Method: Composition-based stats. Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 25/252 (9%) Query: 8 GIVVSGVFALVAGIIAMRLV-SPHHVQTEEVITENPAKFIN------VLISKGDLAVGMV 60 I ++ VF ++ A V S +EE + PA + ++++ L GM Sbjct: 1 MIGIAAVFGAISIFAADFWVKSQAKADSEEKTSSIPAPVVPKVEFKTIVVANAPLRYGME 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 + L + + +E+V G + NA+ +V PI +P+ L KL G Sbjct: 61 LDRAQLSEIPWSQESVPQGAFTTI---NALLADGSRVVLSPIEVNEPVLLTKLSGPNGRA 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------T 166 LS+++ G RA T+ + VGG + P D VDVV+ R E + T Sbjct: 118 TLSNMMTPGMRAVTIRTDEIAGVGGFVTPGDRVDVVLTRDAGEIQEVAKNAQGAAGSTIT 177 Query: 167 VTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +V+++ +V+++ D + + ++ T+E+T A+ + A++V LSL LRS ++ Sbjct: 178 SEIVVADAKVLSVGQGADERQTTPQISNSVTIEVTTDGAQKVALARTVGTLSLSLRSASE 237 Query: 226 LNPSSSEDSDVW 237 S + + Sbjct: 238 GADGKSGVTTIS 249 >gi|172062958|ref|YP_001810609.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171995475|gb|ACB66393.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 342 Score = 158 bits (400), Expect = 7e-37, Method: Composition-based stats. Identities = 59/236 (25%), Positives = 98/236 (41%), Gaps = 17/236 (7%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V + AGI A L +V + V ++ DL G+++ N L W + Sbjct: 8 AVLIIAAGIGAFIL-RQLYVSASTPPPPGNTADVRVRVAAADLPEGLLLRDNDLAWKSMA 66 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRA 131 V G + +L G L+R + G PIR + ++ G L++ L G RA Sbjct: 67 RAQVPAGAFVESQPG---ADLKGALLRNRVDAGAPIRADNVISAGAPDFLAAALQPGMRA 123 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIRVIAIDHN---- 182 ++ + S G+I+P D VDVV+ + + T V+ RV+A+ Sbjct: 124 ISVPVDDVSGNAGLIQPGDFVDVVLTQQIGGSATTPGTFEAETVVRRARVLAVGSEFQRA 183 Query: 183 ---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + + + T TLE+ P A+ ++ A + LSL LRS A + + D Sbjct: 184 KGPASAPDAPVRARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDRRQAAGGD 239 >gi|148261012|ref|YP_001235139.1| SAF domain-containing protein [Acidiphilium cryptum JF-5] gi|326404412|ref|YP_004284494.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] gi|146402693|gb|ABQ31220.1| SAF domain protein [Acidiphilium cryptum JF-5] gi|325051274|dbj|BAJ81612.1| putative pilus assembly protein [Acidiphilium multivorum AIU301] Length = 275 Score = 158 bits (399), Expect = 1e-36, Method: Composition-based stats. Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 20/249 (8%) Query: 6 LMGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 L+ I + + AL AG + + H K + +L + LA G ++ P Sbjct: 2 LLRIALFILLALGLAGFGTVAWLDMH----PSHPHAKAPKMVALLATGRPLAPGTLLQPA 57 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSS 123 P V + D P G +VR + GD + + ++ G+ G L++ Sbjct: 58 DFVAENRPPSKVPADAVPDT--PANRAAYTGAMVRHRLSAGDLLATDIVIRPGDHGFLAA 115 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVI 177 +L G RA ++ + + G+I P DHVD+++ + L+ ++ VLS++RVI Sbjct: 116 VLQPGMRAVSVGVDAITGAAGLIWPGDHVDLLLTQHLTGANLLPTQRVAAETVLSDVRVI 175 Query: 178 AIDHNIDSDERVL------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 AID + T TLE+TP QA+ + A + LSL++R + Sbjct: 176 AIDQRLVQGASGTHPAAKNTARTVTLEVTPEQAERVEVAAHLGPLSLIVRPSEAARGPTP 235 Query: 232 EDSDVWDVQ 240 + V+ Q Sbjct: 236 KPPPVFSGQ 244 >gi|84685163|ref|ZP_01013062.1| pilus assembly protein [Maritimibacter alkaliphilus HTCC2654] gi|84666895|gb|EAQ13366.1| pilus assembly protein [Rhodobacterales bacterium HTCC2654] Length = 275 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 58/254 (22%), Positives = 109/254 (42%), Gaps = 10/254 (3%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ L+ A+ +A R++ V + + ++ + D+ G Sbjct: 1 MRKAPLILAASGIALAVGCAAVAQRVLGGSEQAAPTVAV---PETVVLIAAARDIRFGEP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + + L +P + V G D + I +GD + + + G + Sbjct: 58 IRRDDLVPQTWPADLVPTGAFDSATVLLGAEGTAPRRATQTIREGDVVLAANVSEFGASV 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + S L G RA + ++ +AVGG + P DHVD+V+ + + T V+L + RV+A+ Sbjct: 118 TIGSTLSPGTRAVAIRVNADTAVGGFVSPGDHVDIVLTQGRGDTLRTG-VILQDTRVLAV 176 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS----D 235 D + ++ T T+E+ P ++ LV AQ +LSL+LR+ + + D D Sbjct: 177 DQDTEA-RGARKARTITVEVAPRDSQRLVLAQEAGQLSLILRNDDAIGDTGEMDQITLRD 235 Query: 236 VWDVQEEGKEIQII 249 VW E E +++ Sbjct: 236 VWGDPEPTPEPEVV 249 >gi|148976308|ref|ZP_01813032.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] gi|145964402|gb|EDK29657.1| Flp pilus assembly protein CpaB [Vibrionales bacterium SWAT-3] Length = 290 Score = 157 bits (397), Expect = 1e-36, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 105/229 (45%), Gaps = 22/229 (9%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 +++ L S + +E+V + I VL+ + +G TPN +W A P + + Sbjct: 16 VALSVLLFSQGNNASEKVSVPTTQQTIKVLVPSRTIDIGQNYTPNSFQWKAIPLGEL-EN 74 Query: 80 FIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDIS 137 +ID V + ++ + + +++G + + + G LS L G RA ++ + Sbjct: 75 YIDYVTPESISEDHSMSGIAQTKLVEGSVLSHADITEPKGGYSLSFKLQPGYRAISVPVD 134 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVLSNIRVIAID--HNIDSD 186 +A G I+P D VD++++ S + VT ++ + RV+A + +S Sbjct: 135 QITANSGFIQPGDRVDILLLGSQDGELLRYGNSSQGLYVTTIVHDARVLAFNNTQAAESY 194 Query: 187 ERVLVG--------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 ++V S+ +LE+TP QA +V A+ + KL+L LR D Sbjct: 195 QKVRDSYGAVIPDNSSVSLEVTPEQANQVVLAEQLGKLTLALRGQNDTQ 243 >gi|147677784|ref|YP_001211999.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] gi|146273881|dbj|BAF59630.1| flp pilus assembly protein CpaB [Pelotomaculum thermopropionicum SI] Length = 242 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 103/239 (43%), Gaps = 27/239 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + V A G V +++ VI+ F V +++ + Sbjct: 1 MKNRLILILAVIVGLAAAGGT----YVYLDNLKKSYVIS---GDFTRVAVARQRITARTR 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T ++E P + + + + +E+ G + + IL G+ I ++L + Sbjct: 54 ITAQMIELKDIPAKYINELA------AVSPEEIVGKIAKSEILPGEQILRDRLAQGSSAT 107 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSN 173 GL+ +L GKRA T+ ++ S + G+IKP D VDVV E+ ++++ + Sbjct: 108 DGLAFMLQPGKRAVTVAVNEVSGLAGLIKPGDRVDVVGTFDLQGAPGQEKSSITSILIQD 167 Query: 174 IRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + V++ D + ++ T TL +TP QA+ LV + L+LR D Sbjct: 168 VDVLSTDQATIPLQENGQNGKKEAPARTVTLSVTPEQAQPLVLCSEKGTIRLILRPATD 226 >gi|322434103|ref|YP_004216315.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] gi|321161830|gb|ADW67535.1| Flp pilus assembly protein CpaB [Acidobacterium sp. MP5ACTX9] Length = 291 Score = 156 bits (396), Expect = 2e-36, Method: Composition-based stats. Identities = 58/230 (25%), Positives = 100/230 (43%), Gaps = 19/230 (8%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M RL +++ + + + + R + H E V ++ + + L G Sbjct: 1 MNGRRLTTAFLIALLISGLCTWVLSRKMGTH--AAERVADQHY------VAASRPLQSGE 52 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P+ +E V +P N G ++L G V P+ K P+ + L G+G Sbjct: 53 QLKPDSMELVNWPASNPIAGGFLKP------EDLVGRSVLYPVEKDQPLTDKLLSTAGSG 106 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVI 177 GL++ +P G RA ++ V G + P H+DV++ R+ +P VL + V+ Sbjct: 107 PGLAARIPAGMRAISLKSDEIMGVAGFLSPGSHLDVLVTYRTDKNPEPVTLTVLQDAEVL 166 Query: 178 AIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 A I D D + + + TL LTP A+ V A S + +LRS +D Sbjct: 167 AAGQKIQPDPDGKPVTATVVTLLLTPEDAQRAVLASSQGAIHFILRSGSD 216 >gi|148253053|ref|YP_001237638.1| hypothetical protein BBta_1513 [Bradyrhizobium sp. BTAi1] gi|146405226|gb|ABQ33732.1| putative exported protein of unknown function [Bradyrhizobium sp. BTAi1] Length = 309 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 102/244 (41%), Gaps = 23/244 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + S + V+ + VL++ +A+G ++ + W V G++ Sbjct: 23 IAWFSQMRSRPVAVVERSVESRPAVLVAARTIALGTLLRKEDIAWKDVMPGEVRPGYLMR 82 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAV 142 A E G + R + +P+ + V G+ L+++L G RA ++ + + + Sbjct: 83 GQVSEA--EFLGAISRRNFAQDEPLIASEFVKPGDRQFLAAVLKPGSRAISIFVDAAQSA 140 Query: 143 GGMIKPNDHVDVVMVRSLSE------RKPTVTVVLSNIRVIAIDHNIDSDER-------- 188 GM P D VDV++ +S E RK +L ++RVIAID ++ Sbjct: 141 AGMALPGDRVDVILTQSFGEQATDPGRKTVSETMLRDVRVIAIDQSLTPSTNVAAAISTE 200 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVL----RSIADLNPSSSEDSDVW--DVQEE 242 + T TLEL QA+AL+ A + K L + R + +E VW DV Sbjct: 201 ARIPKTVTLELLERQAEALMVAAQLGKFQLAVLPLERVAVEHPEEQTEAGPVWASDVSPA 260 Query: 243 GKEI 246 +E+ Sbjct: 261 LREV 264 >gi|254461000|ref|ZP_05074416.1| Flp pilus assembly protein CpaB [Rhodobacterales bacterium HTCC2083] gi|206677589|gb|EDZ42076.1| Flp pilus assembly protein CpaB [Rhodobacteraceae bacterium HTCC2083] Length = 286 Score = 156 bits (395), Expect = 3e-36, Method: Composition-based stats. Identities = 49/243 (20%), Positives = 98/243 (40%), Gaps = 14/243 (5%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI------SKGDLAVGMV 60 M V + + +A+ + + Q + + E A V+ + L+ G Sbjct: 1 MIFGVVLLIGIALAGVAVHMTQKYVNQHKAALLEAQANKTPVVPTVPVFVANRKLSYGDE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 + + +P + G + + + V K + I K+ + G + Sbjct: 61 IKLKDIAVAQWPSNALPKGIFQSKEELFPIDQAGARYVMRATEKFEAILAVKITEPGKSV 120 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSN 173 GL S L G+ A T+ + +S V G ++P ++VDV + ++ S Sbjct: 121 GLQSRLEPGQSAFTIKVDSTSGVSGFLRPGNNVDVYWTGKVQANGEQRKSRTVTRLIESA 180 Query: 174 IRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +R+IAID + + + ++ + T T+ +T +Q +L AQS +L+L L D + Sbjct: 181 VRIIAIDQSANEEVKKASIARTVTVAVTQLQGASLTQAQSTGRLNLSLVGERDETIAELI 240 Query: 233 DSD 235 + D Sbjct: 241 EVD 243 >gi|302391028|ref|YP_003826848.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] gi|302203105|gb|ADL11783.1| Flp pilus assembly protein CpaB [Acetohalobium arabaticum DSM 5501] Length = 278 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 58/244 (23%), Positives = 114/244 (46%), Gaps = 16/244 (6%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + IV++ + L+ ++ +E + E P +V+++K ++ +T + + Sbjct: 5 VVIVIAVILGLITSGAVYFMMDN---MQQEAVKEQPK--ASVVVAKQNIEPREQITRSKV 59 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSL 124 + P+E V + + Q L I+ G+ + +L+ + + GL+ Sbjct: 60 QLKQVPQETVHSQAVTSISQAVEKFALK------DIISGEQLLKPRLLGKEEVSSGLAFN 113 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV-TVVLSNIRVIAIDHNI 183 L KRA T+ ++ S V G + P D+VDVV V S E + TV VL ++V+A+ ++ Sbjct: 114 LADDKRAVTVPVTEVSGVAGFLTPGDYVDVVSVFSTYEAQQTVAKTVLQKVKVLAVAQDM 173 Query: 184 --DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + D++ V + TL + +A+ LV A ++ LVLRS + + S S ++ Sbjct: 174 VRERDQKPKVTKSVTLGVGLAEAEKLVLADRKGEIRLVLRSAQNESFSMSNGVKFEELVG 233 Query: 242 EGKE 245 +E Sbjct: 234 NLEE 237 >gi|327540753|gb|EGF27320.1| Pilus assembly, Flp-type CpaB [Rhodopirellula baltica WH47] Length = 403 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 20/247 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ V +A I + + V + + ++ + + Sbjct: 30 MRNKSVF-LILACVCGTIAAIGVSQWMQAQSTGQSSVA------TVEIFVTAKTIDIAEE 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + +P + V G +++++G R +G+P+ KL+ NG Sbjct: 83 ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178 S +P G +M S+V +++P D VDV+ SE + T VL+ +RV A Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195 Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +D +DS+ + +L + A A + K+ L L + +D+N + ++ Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255 Query: 235 DVWDVQE 241 D QE Sbjct: 256 DGGAGQE 262 >gi|87199533|ref|YP_496790.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] gi|87135214|gb|ABD25956.1| Flp pilus assembly CpaB [Novosphingobium aromaticivorans DSM 12444] Length = 260 Score = 156 bits (394), Expect = 3e-36, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 94/218 (43%), Gaps = 13/218 (5%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A ++++ + G +T +P V G ++ + I Sbjct: 4 ASLTRIVVASQAIEFGKPLTNTNTRLADWPAGTVPPGAFTNLA-----DAQRNRIAMQAI 58 Query: 103 LKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-- 159 G+PI ++ G L++ LP G A ++ IS + V G ++P D VD+++ R Sbjct: 59 AAGEPILASRVTGTDGRATLAAALPPGMVAVSLPISDVTGVSGFVRPGDLVDIILTRQIP 118 Query: 160 ---LSERKPTVTVVLSNIRVIAIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVAK 215 ++ V+L + V+ ID D S +VG TAT+++ + A+ L A+ + Sbjct: 119 GEGAGQQDKMTDVILRQVAVLGIDQVADKSKTEAVVGKTATVQVDTLGAQKLALARELGT 178 Query: 216 LSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 LSL LRS+A + + + V G+++ I + Sbjct: 179 LSLGLRSLASVEDTGPTRT-VLARDLAGRQLFIARRSA 215 >gi|32473552|ref|NP_866546.1| pilus assembly protein CpaB [Rhodopirellula baltica SH 1] gi|32398232|emb|CAD78327.1| probable pilus assembly protein CpaB [Rhodopirellula baltica SH 1] Length = 403 Score = 156 bits (394), Expect = 4e-36, Method: Composition-based stats. Identities = 50/247 (20%), Positives = 103/247 (41%), Gaps = 20/247 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++++ V +A I + + V + + ++ + + Sbjct: 30 MRNKSVF-LILACVCGTIAAIGVSQWMQAQSTGQSSVA------TVEIFVTAKTIDIAEE 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + +P + V G +++++G R +G+P+ KL+ NG Sbjct: 83 ITADKIRLEQWPADRVPTGA------SGKLEDVEGKFARQRFYEGEPVMPVKLMADANGS 136 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIA 178 S +P G +M S+V +++P D VDV+ SE + T VL+ +RV A Sbjct: 137 -SQTIPVGFSVVSMRADPESSVATLVRPGDRVDVMAYFVKSELIPETTAKTVLTGVRVFA 195 Query: 179 ID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +D +DS+ + +L + A A + K+ L L + +D+N + ++ Sbjct: 196 VDGRTEREVDSEAEAKPARSISLLIHKKDTPAWTYASELGKIRLTLGNPSDINETKDGET 255 Query: 235 DVWDVQE 241 D QE Sbjct: 256 DGGAGQE 262 >gi|260778163|ref|ZP_05887056.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260606176|gb|EEX32461.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 279 Score = 155 bits (391), Expect = 7e-36, Method: Composition-based stats. Identities = 63/269 (23%), Positives = 115/269 (42%), Gaps = 29/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M RLM + + L++ + L+ + + F VL+S D+ VG V Sbjct: 1 MTAKRLMMLSI-----LLSSVGIGLLLLGQDNSEHQTKEQPEQVFQRVLVSGQDIGVGDV 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKLVDR-GN 118 TPN+ W + EE + D ++D V + L + + I +G I L+ G Sbjct: 56 YTPNMFRWQSLSEEQLSD-YVDYVTEDEITSINLASGIAHIAIKQGQVIAAADLIPPQGG 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTV 169 L+ + G RA ++ + +A G ++P D VD++++ S V+ Sbjct: 115 ASLALKVRAGYRAVSVPVDQVTANSGFVQPGDKVDILLLGSKVSELKKYDNVVEGLYVST 174 Query: 170 VLSNIRVIAIDHNIDSDE----------RVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 + +N+R++A ++ S+ ++ S+ +LE+TP QA +V A + +L+L Sbjct: 175 IATNVRILAFNNLSSSEGFQEKRHDYGAKIPDNSSVSLEVTPEQATQIVLANQLGRLTLS 234 Query: 220 LRSIA--DLNPSSSEDSDVWDVQEEGKEI 246 LR D + S + E K I Sbjct: 235 LRGSGETDFSLPQSHTITTTQLNPESKLI 263 >gi|283769331|ref|ZP_06342230.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] gi|283103988|gb|EFC05372.1| Flp pilus assembly protein CpaB [Bulleidia extructa W1219] Length = 228 Score = 155 bits (391), Expect = 8e-36, Method: Composition-based stats. Identities = 57/235 (24%), Positives = 102/235 (43%), Gaps = 27/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + + AL +A+ L+S A+ V ++ ++ Sbjct: 1 MKK---IKFIAAISGALTMVFLALFLISSS--------AGRGAQSTAVYVASKNIKANQQ 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--- 117 +T ++LE+ P V +G EL G + +V ILK I E + G Sbjct: 50 ITEDMLEYKKVPGNLVVEGA------AKNKDELLGKMAKVDILKNSVISKENVYKEGEPE 103 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 NGGL+ ++ KGKRA + + S+ + +++ D VD+++ R + +LSN+++ Sbjct: 104 KNGGLTYVIAKGKRAISFPVEYSTGISSLLRGGDRVDIILTR-AKDSNFVSKTILSNVKI 162 Query: 177 IAIDHNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +A+ ++ S ST T+EL+P L+ LSL LR+ D Sbjct: 163 LALGNDYSVGVNKSGSEGKSYSTVTVELSPEDCVKLMNGSKAGTLSLSLRTPGDN 217 >gi|162147490|ref|YP_001601951.1| pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209545597|ref|YP_002277826.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] gi|161786067|emb|CAP55649.1| putative pilus assembly protein [Gluconacetobacter diazotrophicus PAl 5] gi|209533274|gb|ACI53211.1| Flp pilus assembly protein CpaB [Gluconacetobacter diazotrophicus PAl 5] Length = 292 Score = 154 bits (390), Expect = 1e-35, Method: Composition-based stats. Identities = 71/271 (26%), Positives = 120/271 (44%), Gaps = 32/271 (11%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R++ IVV+ + I+ + +TE + VL+++ G ++ Sbjct: 4 RILLIVVAVSGLIGVVILGRLALHSGEKPVVAQVTEKKVPTVGVLVARKAEPAGALLQSG 63 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSS 123 L+ FP V G I DV P+ L G L+RVP+ +G + E ++ G+ G L++ Sbjct: 64 DLQTKDFPANLVPPGAIHDV--PSERAALTGGLLRVPVPEGGLLTNEAVLRVGDHGFLAA 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------------ 165 +L G A ++ + S V +I+P D+VD+++ ++ Sbjct: 122 VLKPGDSAVSVGVDSVSGVADLIEPGDYVDLIVTHDVATADVANSGGGAGGNPGGDAGGG 181 Query: 166 --TVTVVLSNIRVIAID----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 VLS +RV+AID H D R + T TLE+TP QA+A+ A + +L+L Sbjct: 182 RIAAETVLSALRVVAIDREMQHTSTVDSRGVGNRTVTLEVTPAQAEAVAVAGRLGRLTLA 241 Query: 220 LRS-----IADLNPSSSEDSDVWDVQEEGKE 245 +RS +A P ++ DV G E Sbjct: 242 VRSLDQAGVAAFAPHTTWGGDVSPALAHGPE 272 >gi|312883753|ref|ZP_07743472.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] gi|309368502|gb|EFP96035.1| Flp pilus assembly protein CpaB, putative [Vibrio caribbenthicus ATCC BAA-2122] Length = 279 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 100/228 (43%), Gaps = 23/228 (10%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 IA+ L++P Q E+ F VL++K + VG T N+ +W E+ + Sbjct: 16 VGIAILLLNPSKPQFEQSQAAAEI-FKRVLVAKQRVVVGQPYTLNMFQWEKVSEQEL-SN 73 Query: 80 FIDDVHQPNAMQ-ELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDIS 137 ++D + + + + +L + I G + + G ++ + G RA ++ + Sbjct: 74 YLDFISEEDFSRLDLKSGIAHTAIQSGQVMSKDDFETPNGGISMAFKVQNGHRAISVPVD 133 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNID---- 184 +A G ++P D VD++++ S E VT + N+RV+A + D Sbjct: 134 AVTANSGFVQPGDKVDILLLGSQVEELKKYDNQVAGLYVTTIAVNVRVLAFNQYADPQDF 193 Query: 185 SDERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 R G S+ +LE+TP QA +V A + KL+L LR + Sbjct: 194 QKNRSAYGADIPDNSSVSLEVTPEQATQIVLANQIGKLTLSLRGAGEA 241 >gi|330811038|ref|YP_004355500.1| hypothetical protein PSEBR_a4092 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379146|gb|AEA70496.1| Hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 271 Score = 154 bits (389), Expect = 1e-35, Method: Composition-based stats. Identities = 58/227 (25%), Positives = 105/227 (46%), Gaps = 16/227 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I +S V L A +A +S + +V+++ ++ G + Sbjct: 1 MSSRTLPLIGISLVMGLGAAWMADSWLS------ARLNATPDDHLRSVVVATVEIPFGQM 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR-GNG 119 V + V P + + D ++ ++ G + IL+GD +R +L + G Sbjct: 55 VEAQQVTTVRMPMDTIPDDAF------DSSEQAVGKIATFDILRGDIVRGARLSEHLGGS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPTVTVVLSNIRVI 177 L+SL+ KRA ++ + VGG + P + VDV+ ++ T +L N+RV+ Sbjct: 109 TLASLIAPDKRAISVRVDDVVGVGGFLLPGNRVDVLATKTTNAGSNSATSRTLLENLRVL 168 Query: 178 AIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 A+D +D+ + +V TLE++ +A+ LV AQ+ KL L LR+ Sbjct: 169 AVDQTAGTDKTQPVVVRAVTLEMSATEAELLVTAQTEGKLQLALRNP 215 >gi|78062907|ref|YP_372815.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77970792|gb|ABB12171.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 342 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 63/274 (22%), Positives = 106/274 (38%), Gaps = 28/274 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K RL +VV+ ++ +V V ++ DL G+++ Sbjct: 3 KPLRLAVLVVAAGIG-------AFILRELYVAASTPSVATETDQARVRVAAADLPEGLLL 55 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 N L W P V G + +L G L+R + G PIR+E ++ G Sbjct: 56 RDNDLAWKRMPRAQVPAGAFVESQPG---ADLKGALLRNHVGAGAPIRVENVIPAGAPDF 112 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----VTVVLSNIR 175 L++ L G RA ++ + S G+I+P D VDV++ + + + V+ R Sbjct: 113 LAAALQPGMRAISVPVDDVSGNAGLIQPGDFVDVLLTQQIGGSATSPGTFEAETVVRRAR 172 Query: 176 VIAIDHNIDSDERV-------LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 V+A+ + T TLE+ P A+ ++ A + LSL LRS A + Sbjct: 173 VLAVGSEFQRAKAPASAPDATARARTVTLEVAPRTAQVVLVATRLGSLSLALRSFATSDR 232 Query: 229 SSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262 D E+ + Q + AG + E Sbjct: 233 RQPAGGD-----EQEPDTQPVWAGDVSRAAREAA 261 >gi|242315438|ref|ZP_04814454.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|242138677|gb|EES25079.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] Length = 366 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|225174960|ref|ZP_03728957.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] gi|225169600|gb|EEG78397.1| Flp pilus assembly protein CpaB [Dethiobacter alkaliphilus AHT 1] Length = 238 Score = 153 bits (388), Expect = 2e-35, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 97/237 (40%), Gaps = 17/237 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R + + + + LV + + + I + NV+++ + Sbjct: 1 MKANRKLLLA-AVIVGLVTVVALNSYIRSLNTPALASIPHS-----NVVVASSTIPAHTR 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T +L+ V+ P + V + ++ + G + R I++G+ + ++V Sbjct: 55 ITAEMLDVVSIPNDAVHPEALR------SVDDAAGGISRTEIVRGEQVIDARVVTEDRRA 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVI 177 LS +P+G RA ++ + + V G I D++DV++ +E V N+ V+ Sbjct: 109 TLSYRVPEGMRAISIPVGEVTGVAGYISAGDNIDVLITYDDTEIHEGAITYTVFQNVNVL 168 Query: 178 AIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A N DE V T TL +T QA+ L A L LRS D + E Sbjct: 169 ATGPNTREKDDEEQEVVGTVTLSVTAAQAEVLAYALLKGNYHLTLRSPLDEDEVELE 225 >gi|284048527|ref|YP_003398866.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] gi|283952748|gb|ADB47551.1| Flp pilus assembly protein CpaB [Acidaminococcus fermentans DSM 20731] Length = 339 Score = 153 bits (387), Expect = 2e-35, Method: Composition-based stats. Identities = 57/272 (20%), Positives = 102/272 (37%), Gaps = 38/272 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +LM + S A+ ++ + L + Q + A + V+ + D+A V Sbjct: 27 MSPRKLMLLCGSAALAVFL-LLYVILSALFPDQKPGNVA---AGNVTVVEAARDIAPQTV 82 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +L+ V P V G + D Q G + + GD + KL G GG Sbjct: 83 LTEEMLKTVEVPANLVPAGALTDKKQA------LGKKTGIDLFAGDILTERKLTSHG-GG 135 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++P G RA + ++ + V G KP D VD+++V +L ++ ++A++ Sbjct: 136 FVGMIPDGMRAVSFGVNDVTGVSGFAKPGDKVDILLVTDKEGNGIVSKTLLKDVLILAVN 195 Query: 181 ----------HNIDSDERVLVG-----------------STATLELTPMQAKALVAAQSV 213 SD++ L S T+ LTP A L+ + + Sbjct: 196 KSSDRPQGTTQTSGSDKKTLTSGSQPAGNSGSTGSMGTPSVVTVALTPYDAAKLIGSSRI 255 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 +L ++LR S V + Sbjct: 256 GQLQMMLRPADGSTDDKSIGYYVIPLPGNTAS 287 >gi|87312293|ref|ZP_01094391.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87284997|gb|EAQ76933.1| probable pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 363 Score = 153 bits (386), Expect = 3e-35, Method: Composition-based stats. Identities = 44/194 (22%), Positives = 92/194 (47%), Gaps = 13/194 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A +S + T + N+ ++ D+ + ++P +++ +P++ V +G + Sbjct: 1 MASIGISQVLESKSQQSTAPQMEMENIFVAIEDIDINEQLSPELIKLEPWPKDKVPEGAV 60 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISS 140 + ++E++ RV + G+PI KL + G S ++PKG R ++ ++ + Sbjct: 61 TN------LEEIENRRPRVRLYAGEPILERKLFGSNEDKGASKMIPKGFRVHSVRVTAET 114 Query: 141 AVGGMIKPNDHVDVVMVRSLSE--RKPTVTVVLSNIRVIAID----HNIDSDERVLVGST 194 + G+I P D VDV++ S K +L N+RV A++ DS+ + T Sbjct: 115 SASGLILPGDRVDVLVYLRNSGSINKTLTRTILKNVRVFAVNEQTHRETDSEGNTITAKT 174 Query: 195 ATLELTPMQAKALV 208 +L + P Q + L+ Sbjct: 175 VSLLVKPSQVEVLM 188 >gi|121534342|ref|ZP_01666166.1| SAF domain [Thermosinus carboxydivorans Nor1] gi|121307112|gb|EAX48030.1| SAF domain [Thermosinus carboxydivorans Nor1] Length = 286 Score = 152 bits (384), Expect = 4e-35, Method: Composition-based stats. Identities = 53/232 (22%), Positives = 104/232 (44%), Gaps = 23/232 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL+ + ++ V +L + + + +E + P + + V+++K D+ Sbjct: 1 MKLSTKGVLAIALVLSLATTGLIYKYL-------QEATQKTPQEGVVVVVAKVDIPPKTK 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 +T ++ P E V G + + ++ G + R I+ G+ I +LV +G + Sbjct: 54 ITAEMVATAKVPAEYVQPGAVRE------LKTAVGAIAREHIVAGEQIAERRLVIQGKSA 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-RKPTVTVVLSNIRVIA 178 G + ++P KRA T+ ++ + V G +KP D+VDVV + ++L N+ V+A Sbjct: 108 GFTGIIPPDKRAVTIAVTEVTGVAGFVKPGDYVDVVATFDQNTVGDNVSQIILQNVLVLA 167 Query: 179 IDH--------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 + + + +T TL +TP + L A+ K+ L LR Sbjct: 168 ANRDAEAGAADGAKDKKEAIKTATVTLAVTPDEVAQLALAEDKGKVRLALRP 219 >gi|217978827|ref|YP_002362974.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] gi|217504203|gb|ACK51612.1| Flp pilus assembly protein CpaB [Methylocella silvestris BL2] Length = 338 Score = 152 bits (384), Expect = 5e-35, Method: Composition-based stats. Identities = 55/253 (21%), Positives = 105/253 (41%), Gaps = 22/253 (8%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF---INVLISKGDLAVGMVV 61 R + IV+ VF + + + V + EV + A +L + + G ++ Sbjct: 4 RKLLIVLGAVFVIAGVGLCIAWVGQLRNREIEVASPAAAPAASEQAILSATRAIPAGELL 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + + W V G + A E G + R G+ + LV + Sbjct: 64 RSDDIGWKNVGAAGVQAGNLLRGQ--VAETEFFGAITRRDFAAGEGLIASDLVKPNDRRF 121 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVLSNIR 175 L+++L G+RA ++ + + + G++ P D+VDV++ + + R+ VL N+R Sbjct: 122 LAAVLKPGRRALSVSVDAAQSAAGLVLPGDYVDVILTQDFGDKIDIGRRTVSETVLWNVR 181 Query: 176 VIAIDHNIDSDERVL-----------VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 VIA+D ++D+ + + T TLE+ QA+ L+ A + K L +R + Sbjct: 182 VIAVDQSLDAQTSTVAEHTALGAESHIPKTVTLEMFERQAETLLVAAQLGKFQLAVRPLV 241 Query: 225 DLNPSSSEDSDVW 237 ED + Sbjct: 242 GSGDVKIEDQHIA 254 >gi|300856049|ref|YP_003781033.1| putative cell wall-binding protein [Clostridium ljungdahlii DSM 13528] gi|300436164|gb|ADK15931.1| putative cell wall binding protein [Clostridium ljungdahlii DSM 13528] Length = 321 Score = 151 bits (382), Expect = 8e-35, Method: Composition-based stats. Identities = 48/223 (21%), Positives = 97/223 (43%), Gaps = 24/223 (10%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 AK +L++ ++ G ++ +++ + P +FD +I D ++ G Sbjct: 35 EAAKKTTILVAAETISPGTLIDKKMIKKIQVPYNPIFDNYIKDSS------KIAGKYTTE 88 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I K + ++KL+++G L+ + RA ++ ++ S V G++KP D+VD+++ S Sbjct: 89 TISKNEGFHIDKLLEKGGDELNLKIDNDYRAISISVTGDSGVSGLLKPKDYVDIIVYTSE 148 Query: 161 SERK------PTVTVVLSNIRVIAIDHNIDSDERVLVGST------------ATLELTPM 202 +VL NI+V+A+D I D + + TL + Sbjct: 149 KRDGIKVVRPDEAKIVLQNIQVLAVDKQISRDNKESNSNKSSDNGKAPTNFLVTLSVKVS 208 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 + +V AQS+ + L LR + D + + + D+ E Sbjct: 209 DLEKVVLAQSIGSIKLALRPLKDEITTQTNGTTWEDMSVNTDE 251 >gi|261856885|ref|YP_003264168.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] gi|261837354|gb|ACX97121.1| Flp pilus assembly protein CpaB [Halothiobacillus neapolitanus c2] Length = 258 Score = 150 bits (380), Expect = 1e-34, Method: Composition-based stats. Identities = 55/245 (22%), Positives = 110/245 (44%), Gaps = 13/245 (5%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 + + V+ + +A ++A++ ++ T P K V++ +L VG V++ Sbjct: 8 FLYVAVAVLLGGLASVLAVKYINQQV--ATRTHTAAPQKMRTVVVPVHNLKVGDVLSAKD 65 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 L P V + P+ + G ++ P+ +G PI + N S ++ Sbjct: 66 LATRDIPVAYVPADALT----PDDYESHLGQMLTTPLAQGAPISAMAMEPIANHF-SDII 120 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI-- 183 + A T+D+S ++++ G+I P DH+D++++ S + + +LS++ V+A + Sbjct: 121 KPDRVAYTIDVSETNSISGLIVPGDHIDILLLLSKNSKDDI-RPLLSDVLVLATGKHAKG 179 Query: 184 ---DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 D E S TLELTP A+ + A+ + +L ++LRS P + D+ Sbjct: 180 VRSDGTEGNQGYSNLTLELTPKNAQRIGIAKKMGQLLVMLRSPDTKFPPNLGLLTASDLL 239 Query: 241 EEGKE 245 G Sbjct: 240 GAGPR 244 >gi|255597441|ref|XP_002536774.1| conserved hypothetical protein [Ricinus communis] gi|223518588|gb|EEF25608.1| conserved hypothetical protein [Ricinus communis] Length = 302 Score = 150 bits (380), Expect = 2e-34, Method: Composition-based stats. Identities = 57/257 (22%), Positives = 108/257 (42%), Gaps = 20/257 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ ++ I++ V A++ +I +V+ + ++ + + +S DL G+++ Sbjct: 1 MSNIIKILLLLVGAVLIALIVRTVVASISHPAAQAVS-----TVKIRVSAADLPQGLLLR 55 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGL 121 + L W P NV I V EL G L+R G + + ++ G L Sbjct: 56 DDDLAWKDVPAGNVPAAAI--VANAPNAIELKGALLRHAAAAGTVLGPDDVILPSAPGFL 113 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------TVTVVLSNIR 175 ++ L RA ++ I S G+I+P D+VD+++ + + R + V+ +R Sbjct: 114 AATLKPDMRAVSVAIDDVSGNAGLIQPGDYVDLLLTQQMDHRTDSPDLAVSSETVVERVR 173 Query: 176 VIAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 V+A+ D+ + T TLE+TP A+ + A + LS LRS A + Sbjct: 174 VLAVGSELSRPKTSDAPDANNRARTVTLEVTPHMAEVVSVAARLGSLSFALRSFAKASRE 233 Query: 230 SSEDSDVWDVQEEGKEI 246 + S V Sbjct: 234 ADAASAVPASGPLQARP 250 >gi|167581962|ref|ZP_02374836.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis TXDOH] Length = 269 Score = 150 bits (378), Expect = 3e-34, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 105/271 (38%), Gaps = 39/271 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A IA + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYIA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA--------------MQELDGVLVRVPILKGD 106 + L W +V G + + +L G L+R P+ +G Sbjct: 55 LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114 Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160 P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174 Query: 161 ----SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211 ER + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + LSL LRS A + ++ + Sbjct: 235 HLGALSLALRSFATSDRGAAGLASAEPPAPP 265 >gi|149178506|ref|ZP_01857094.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] gi|148842621|gb|EDL56996.1| pilus assembly transmembrane protein [Planctomyces maris DSM 8797] Length = 324 Score = 148 bits (375), Expect = 5e-34, Method: Composition-based stats. Identities = 57/238 (23%), Positives = 94/238 (39%), Gaps = 14/238 (5%) Query: 10 VVSGVFALVAGIIAMRLVSP--HHVQTEEVITENPAKFINVLI---SKGDLAVGMVVTPN 64 + + +FA++ G+ A V H V+ E+P ++ + DL G ++ + Sbjct: 1 MTAAIFAILLGLGAAYTVRQFLHEKPKPFVLAEDPPAGPKKIVLPIASRDLVPGQKLSLD 60 Query: 65 ILEWVAFPEENVFDGFIDDVHQPN---AMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 + + E + + D Q + G ++ I G P L G G G Sbjct: 61 DISLLQISPELLSKRYDADSEGKQRIMMTQYIAGRTLKTAIKAGQPFHTIDLFANGMGPG 120 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-VVLSNIRVIAI 179 +S +L G RA T+ I V G +P VDV+ ++ P T +L +RV+A+ Sbjct: 121 ISEILEPGNRAVTVAIHKIGNVAGFSRPGTIVDVLFRSKETDGIPETTITLLEKVRVLAV 180 Query: 180 DHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 +V G TLE++P Q K L + LSL LR + S Sbjct: 181 GDQAVPGHKVGEGGGMDHPVTLEVSPEQGKVLKVVEDHGILSLALRHPDENTEVVSAG 238 >gi|319788662|ref|YP_004148137.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] gi|317467174|gb|ADV28906.1| Flp pilus assembly protein CpaB [Pseudoxanthomonas suwonensis 11-1] Length = 274 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 60/239 (25%), Positives = 102/239 (42%), Gaps = 22/239 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + I ++ AL+A +A+ V T T++ + V + D+ G ++ Sbjct: 7 SKNFLYIAIAVGMALLAAFVAVNYVQT----TVAERTQDNRPMVEVAVPMDDMPQGAILQ 62 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P L P E + P + +G ++R P+ G P+ LV + S Sbjct: 63 PGDLALRRIPAEYAPADAVT----PENHGQFEGRMLRSPVRGGAPLSASALVPLYDQF-S 117 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRVI 177 L+P+GK A T+ + ++++ GMI P D +D++ ++ E T +L +RV+ Sbjct: 118 RLIPRGKVAYTLSVDENNSISGMIAPGDLIDILFLKDKDESSGARTGALALPLLQQVRVL 177 Query: 178 AIDHNIDS----DERVL----VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 A I D R S+ TLEL QAK L A L ++LR + D +P Sbjct: 178 ATGTRIGERVAPDGRPADDGQGFSSVTLELDHGQAKTLAVASEAGSLRVLLRELEDDSP 236 >gi|167919050|ref|ZP_02506141.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei BCC215] Length = 275 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|254441777|ref|ZP_05055270.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] gi|198251855|gb|EDY76170.1| Flp pilus assembly protein CpaB [Octadecabacter antarcticus 307] Length = 286 Score = 148 bits (375), Expect = 6e-34, Method: Composition-based stats. Identities = 59/277 (21%), Positives = 112/277 (40%), Gaps = 15/277 (5%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV--QTEEVITENPAKFINVLISKGDLAVG 58 M+ + + V A A + + + + + E ++V + G Sbjct: 1 MRAVFGLVLFVGMGLAGFAIYMVQGYLQEQNANLERQRAAMELAVPTVHVYAVNRVMEHG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T + + + E + +G + + + +V + +PI K+ G Sbjct: 61 EQITMQDIIMIRYAEPYLPEGVFRTAEELFSAGPDELRVVIRQMEPNEPILATKVTAPGE 120 Query: 119 -GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------RKPTVTVVL 171 GG+++LL +G RA T+++ +SS V G + P D VDV ++ ++ Sbjct: 121 VGGITALLARGMRAFTIEVDVSSGVSGFLNPGDRVDVYWTGRVNGIDGANTNGEFTKLIQ 180 Query: 172 SNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + I ++AID +S + T T+++TP Q AL AQ+ LSL L D +S Sbjct: 181 AGIELVAIDQTSESGRIGASIARTVTVQVTPDQVAALAQAQATGNLSLSLVGREDDTVAS 240 Query: 231 SEDSDVWDV-----QEEGKEIQIIKAGVIVNKDGEGI 262 S + + + Q EIQ + I + G + Sbjct: 241 SVEVNQASLLGIEAQAPTPEIQTAEICSIRTRRGAEV 277 >gi|167902789|ref|ZP_02489994.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei NCTC 13177] Length = 279 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|295690799|ref|YP_003594492.1| Flp pilus assembly protein Cpab [Caulobacter segnis ATCC 21756] gi|295432702|gb|ADG11874.1| Flp pilus assembly protein CpaB [Caulobacter segnis ATCC 21756] Length = 293 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 82/288 (28%), Positives = 132/288 (45%), Gaps = 40/288 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGII---AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 M RL+ ++++ V A+ ++ A+ + + V VL++K DLA+ Sbjct: 1 MSPVRLLIVLIAAVSAIGMAVVLQRALGVKADKPVAAAAPAAAPAKPMTQVLVAKRDLAI 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQP------------------------NAMQEL 93 G +T ++W A+P ++V FI + P + + L Sbjct: 61 GARLTQADIDWQAWPSDSVNAAFITNGAAPAEGETTSGAVALAKAAVTGQMIGGDPAKAL 120 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGG-LSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 DG +VR PIL G+PI K+V G GG LS +L GKRA + +S + GG I P D V Sbjct: 121 DGAIVRDPILAGEPITARKIVRGGEGGYLSVVLTPGKRAVAVPVSADTTAGGFILPGDRV 180 Query: 153 DVVMVRSLS------ERKPTVTVVLSNIRVIAIDHN--IDSDERVLVGSTATLELTPMQA 204 DV+ R R VL N+RV+A+D D D + + ++ATLE+ +A Sbjct: 181 DVLSTRDAPLPGGVGGRVIIGETVLRNVRVLALDQKTVADKDAKSQIATSATLEVGAAEA 240 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 +AL AA++ ++L LR+ D S + D ++I + G Sbjct: 241 EALAAAKAGGPVTLALRAYTDAGAPSGGFAGPSD----PAAVRINRGG 284 >gi|260892925|ref|YP_003239022.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] gi|260865066|gb|ACX52172.1| Flp pilus assembly protein CpaB [Ammonifex degensii KC4] Length = 233 Score = 148 bits (374), Expect = 7e-34, Method: Composition-based stats. Identities = 56/234 (23%), Positives = 101/234 (43%), Gaps = 20/234 (8%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A+ A + + A +++V+++ D+ V +TP++L+ P Sbjct: 14 AVGAAVGTYFYLERLKATY-----RQKAHYVSVVVAAQDIPVRTSLTPSLLKLQDLPSSC 68 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG--GLSSLLPKGKRAAT 133 V + + ++ G + VP+++G+ + KL + L+ L G+RA T Sbjct: 69 VHPLAVRRI------EDAVGRVTTVPLVRGEVLLQSKLASSKDEKQELALSLQPGERAVT 122 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAIDHNIDSDERVL 190 + ++ S VGG++KP D VDVV L + T +V SN+RV+A+ + Sbjct: 123 LAVNAVSGVGGVLKPGDRVDVVATFDLESQGTKTTYTALVASNVRVLALGSS----GEKK 178 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 T TL +TP Q + A + L LR + + + D+ E GK Sbjct: 179 PYDTVTLAVTPRQGALITLATERGSVRLFLRGPKEQEATQLLPVKLPDLLEAGK 232 >gi|254197384|ref|ZP_04903806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|169654125|gb|EDS86818.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] Length = 350 Score = 148 bits (374), Expect = 8e-34, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLASLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|126452162|ref|YP_001066149.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|126225804|gb|ABN89344.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] Length = 350 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL- 160 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 161 --------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 +R + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|83721444|ref|YP_442981.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|257139205|ref|ZP_05587467.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|83655269|gb|ABC39332.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis E264] Length = 345 Score = 148 bits (373), Expect = 9e-34, Method: Composition-based stats. Identities = 61/277 (22%), Positives = 107/277 (38%), Gaps = 44/277 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA--------------MQELDGVLVRVPILKGD 106 + L W +V G + + +L G L+R P+ +G Sbjct: 55 LRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAAAAGDLKGDLLRHPVREGM 114 Query: 107 PIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL----- 160 P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L Sbjct: 115 PLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLAAPGG 174 Query: 161 ----SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQ 211 ER + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSHDAQVITVGA 234 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 + LSL LRS A +S+ V E + Sbjct: 235 HLGALSLALRSFA-----TSDRGAVGLASAEPPAPPV 266 >gi|188586926|ref|YP_001918471.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351613|gb|ACB85883.1| Flp pilus assembly protein CpaB [Natranaerobius thermophilus JW/NM-WN-LF] Length = 233 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 53/237 (22%), Positives = 110/237 (46%), Gaps = 18/237 (7%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN--PAKFINVLISKGDLAVGM 59 KL + G++VS + A+V +I + +S E + V+++ +L G Sbjct: 3 KLKKYRGLLVSLILAIVTVLIIHQYISSLETAYEGTGPREIDGEDQVAVVVATSNLDTGT 62 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++T + L+ PE+ + D +E+ G +++ +++ + + +++ Sbjct: 63 ILTQDHLDTRKVPEQTAHPQAVTD------KEEITGEVLKQDVVEHEVLMSSRVLGEEEA 116 Query: 120 G-LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171 LS ++P+ KRA ++ + S V G I+ D+VDVV + +R+ + ++L Sbjct: 117 NKLSEVIPENKRAMSVAVDQVSGVAGFIQAGDYVDVVATKDEEDREGQEPSQDSSSEIIL 176 Query: 172 SNIRVIAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 N++V+A+ I E V ST TL + +A L A+ + L+L+ I + Sbjct: 177 DNLQVLAVGDRILYSRQELVQEVSTVTLAVNRNEATELTHAEEEHVIRLLLQPITEN 233 >gi|152994346|ref|YP_001339181.1| SAF domain-containing protein [Marinomonas sp. MWYL1] gi|150835270|gb|ABR69246.1| SAF domain protein [Marinomonas sp. MWYL1] Length = 309 Score = 148 bits (373), Expect = 1e-33, Method: Composition-based stats. Identities = 59/271 (21%), Positives = 109/271 (40%), Gaps = 31/271 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--FINVLISKGDLAVG 58 MK++ + I + VFA+ ++ L S V K F VL + DL G Sbjct: 1 MKVSSVFFISGALVFAIGGALLVRVLASTPPPPAPVVKAAPAPKPVFTPVLAASKDLVPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + ++W+A ++ + + + + + G VR P+ KGD + +V G+ Sbjct: 61 DFIDNSAVQWLAVDKQYESHSYF--LKGVDQVDAVFGATVREPVAKGDVLGSRVVVLPGD 118 Query: 119 GGL-SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------ 165 G +S+L G RA + ++ G++ D VDVV+ + Sbjct: 119 AGFIASVLESGMRAVAIPADAVTSNAGLVSAGDRVDVVLGLKRDQENGGEADPMASIELP 178 Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLV------------GSTATLELTPMQAKALVAAQ 211 +L N+RV+A++ ++ + T TLE+ P + L A+ Sbjct: 179 KLASQTLLRNVRVLALNDAVEEMAKEKPTEEKSGAKKRKFYETVTLEVFPKDVERLTVAR 238 Query: 212 SVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + L L LRS+ + S D + ++E Sbjct: 239 EIGVLQLALRSVRNEMLVGSSDENRIAARDE 269 >gi|76810999|ref|YP_333434.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei 1710b] gi|126438737|ref|YP_001058907.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134282270|ref|ZP_01768975.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|226196386|ref|ZP_03791968.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254179873|ref|ZP_04886472.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254188721|ref|ZP_04895232.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254258897|ref|ZP_04949951.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|76580452|gb|ABA49927.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 1710b] gi|126218230|gb|ABN81736.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|134246308|gb|EBA46397.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|157936400|gb|EDO92070.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|184210413|gb|EDU07456.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|225931603|gb|EEH27608.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|254217586|gb|EET06970.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 350 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 T + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|303241713|ref|ZP_07328210.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] gi|302590714|gb|EFL60465.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] Length = 250 Score = 147 bits (372), Expect = 1e-33, Method: Composition-based stats. Identities = 51/261 (19%), Positives = 114/261 (43%), Gaps = 24/261 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ IV+S + AL + + + + + ++I+V ++ +A Sbjct: 1 MESVNKRVIVISIILALFTTALVFLYI------KDATVKPDVVEYIDVYVAAKTMAAKYE 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++ +E + + ++ G ++ +++G+ I +LV N Sbjct: 55 ITEADIKKTRVTKEYLNTDAVL------VQADIIGKRLKESVIEGEQILRSRLVQEDNFT 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---------PTVTVVL 171 L+ +P+G RA +++++ + V +I+P D VD++ L ++ V+ Sbjct: 109 LAYNVPEGMRAISVNVNEQTEVANLIRPGDFVDIIASFPLEKQDIGQNTIINLGISQTVI 168 Query: 172 SNIRVIAIDHN--IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 N++V+A+ + I+ D+++ + T TL ++P A+ L + + LRSI D Sbjct: 169 QNVQVLALGQDLAIEEDKKLELPKTVTLAVSPKDAEKLTFVTEFGTMRMTLRSIGDDKII 228 Query: 230 SSEDSDVWDVQEEGKEIQIIK 250 S D + D K + I+ Sbjct: 229 -SGDGTIKDDVMGDKGVIIVP 248 >gi|121599044|ref|YP_993007.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124386572|ref|YP_001026339.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126449623|ref|YP_001080387.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|254177864|ref|ZP_04884519.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] gi|254358541|ref|ZP_04974814.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|121227854|gb|ABM50372.1| Flp pilus assembly protein CpaB [Burkholderia mallei SAVP1] gi|124294592|gb|ABN03861.1| Flp pilus assembly CpaB [Burkholderia mallei NCTC 10229] gi|126242493|gb|ABO05586.1| Flp pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|148027668|gb|EDK85689.1| Flp pilus assembly protein CpaB family [Burkholderia mallei 2002721280] gi|160698903|gb|EDP88873.1| Flp pilus assembly protein CpaB family [Burkholderia mallei ATCC 10399] Length = 350 Score = 147 bits (371), Expect = 1e-33, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 T + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|217421311|ref|ZP_03452815.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237812164|ref|YP_002896615.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|217395053|gb|EEC35071.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|237502713|gb|ACQ95031.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] Length = 350 Score = 146 bits (370), Expect = 2e-33, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F A +A + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAFLFRALYVA----------ASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 T + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|53719432|ref|YP_108418.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] gi|52209846|emb|CAH35818.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei K96243] Length = 350 Score = 146 bits (368), Expect = 3e-33, Method: Composition-based stats. Identities = 56/257 (21%), Positives = 98/257 (38%), Gaps = 43/257 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KL LM + V G F L +V + P + + V ++ DL G++ Sbjct: 5 LKLAGLMLVAVVGAF----------LFRVLYVAASQPRPAAPPQQVRVRVAAADLPAGLL 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNA------------------MQELDGVLVRVPI 102 + L W G + + +L G L+R P+ Sbjct: 55 LRDADLGWKTMARSAAPAGALIEGDARGDGKAAGAANDASAAAAGEPKTDLKGDLLRHPV 114 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G P+ ++ G L++ L G RA ++ I S G+I+P D+VDV++ + L+ Sbjct: 115 RAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLA 174 Query: 162 ERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVGSTATLELTPMQAKAL 207 T + + +RV+A+ D+ + T T E++ A+ + Sbjct: 175 APGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRARTVTFEVSSRDAQVI 234 Query: 208 VAAQSVAKLSLVLRSIA 224 + LSL LRS A Sbjct: 235 TVGAHLGALSLALRSFA 251 >gi|319941903|ref|ZP_08016224.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] gi|319804556|gb|EFW01426.1| hypothetical protein HMPREF9464_01443 [Sutterella wadsworthensis 3_1_45B] Length = 295 Score = 145 bits (367), Expect = 4e-33, Method: Composition-based stats. Identities = 57/225 (25%), Positives = 102/225 (45%), Gaps = 36/225 (16%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + V++EN A+ ++V + +L+ G ++ +EW A + D F+ + Q Sbjct: 27 AVQKEAAAPVVSENKAQ-VSVARAAANLSPGSFLSARDIEWTAVAQSAAKDTFVQNESQ- 84 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMI 146 +L G LV PI G+ I L+ R + ++++L G RA T+++ + + G++ Sbjct: 85 ----DLSGALVLKPIKAGEVISPSALLARTDPEFVAAVLAPGMRAFTIEVDMVTGGAGLL 140 Query: 147 KPNDHVDVVMVRSLSERK----------PTVTVVLSNIRVIAIDHNIDSDE--------R 188 +P + VDV++ +K +L N+RVIA+DH I+ Sbjct: 141 RPGNRVDVILAAQTDPQKSRAFASQKNFDVARTLLHNLRVIAVDHTIEPKGFGADPQSSD 200 Query: 189 VLVGS-----------TATLELTPMQAKALVAAQSVAKLSLVLRS 222 + T TLE+TP + L A+S +LSL LR+ Sbjct: 201 PRMVRSSTPANINRKGTVTLEVTPKDVELLTVARSNGQLSLSLRN 245 >gi|220918103|ref|YP_002493407.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] gi|219955957|gb|ACL66341.1| Flp pilus assembly protein CpaB [Anaeromyxobacter dehalogenans 2CP-1] Length = 309 Score = 145 bits (367), Expect = 5e-33, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 110/255 (43%), Gaps = 16/255 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R V V A++A + L++ + + V++++ D+ V + Sbjct: 17 RKRRAAWGVTFLVVAILAAVGVALLLTRYMDARVAAVR---VPTSGVVVAQVDIPVATPI 73 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-G 120 P L V +P + G + L G + VPI +G+ + KL G G Sbjct: 74 KPEWLGVVPWPVTALPPGAASEPA------ALVGQVAIVPITRGEAVLPSKLATAGARSG 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRVIAI 179 L++LLP G RA + + V G + P D VDV++ E P T +VL N++V+A+ Sbjct: 128 LATLLPAGMRAVAVRVDDVVGVAGFLHPGDRVDVIVTMQPREGVPYTSKIVLQNVKVLAV 187 Query: 180 DHNID----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +++ E+ + ATL +T +++ L + S +L L LR++ D ++ Sbjct: 188 GQHLELRGKDAEKPNPVTVATLMVTGDESERLALSASKGQLLLSLRALGDEELVDTKGIT 247 Query: 236 VW-DVQEEGKEIQII 249 +E ++ Sbjct: 248 PPVLFASAAQEPRVA 262 >gi|317122047|ref|YP_004102050.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] gi|315592027|gb|ADU51323.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] Length = 236 Score = 145 bits (365), Expect = 7e-33, Method: Composition-based stats. Identities = 56/248 (22%), Positives = 108/248 (43%), Gaps = 19/248 (7%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M R++ +++ + L ++ + Q E + V+++ + Sbjct: 1 MSRGRIVRYLLLPVLVGLAVTVLVAFYIRVPAGQAES------GPRVPVVVATRPVPAQT 54 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGN 118 + ++L P + V G I +++ G + +VP+ +G+ + KL G Sbjct: 55 RLEADMLAVRQVPADLVGRGAIGR------LEDAVGKVTKVPLAEGEFVLASKLARGDGT 108 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIR 175 GL+ LP+G RA T+ AVGG ++P D VDV + +P V +++ N+ Sbjct: 109 DGLAYRLPEGTRALTVAADPVIAVGGFVQPGDRVDVFIGLPGGQPGVAQPEVRLLVENVL 168 Query: 176 VIAIDHNIDSDERVL-VGST-ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A+ ++ + G T TL ++P A A+V A+ +L L LR D P+ Sbjct: 169 VLAVQQQTAAEGQPAGEGLTHLTLAVSPAHAAAIVLAEQEGRLRLALRPAGDDTPAGPIT 228 Query: 234 SDVWDVQE 241 + + D+ Sbjct: 229 ARLADLAR 236 >gi|115376401|ref|ZP_01463638.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|310822673|ref|YP_003955031.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] gi|115366608|gb|EAU65606.1| Flp pilus assembly CpaB, putative [Stigmatella aurantiaca DW4/3-1] gi|309395745|gb|ADO73204.1| Flp pilus assembly protein CpaB [Stigmatella aurantiaca DW4/3-1] Length = 270 Score = 145 bits (365), Expect = 8e-33, Method: Composition-based stats. Identities = 52/232 (22%), Positives = 104/232 (44%), Gaps = 12/232 (5%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 V+ ++ +E + V+++ D+ G V++ ++ + PE+ V + + Sbjct: 21 VAYSAIKKKEADVRRGWNLVPVVVAAQDIPEGSVISFEMISQRSVPEQFVTSSVV----K 76 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 P++ + V VP+ GDP+ + + LS+ + K RA T++ +++VGG Sbjct: 77 PDSANYVVNQKVLVPLQAGDPLLWSQFETTKAAERLSTKVQKKGRAVTIEAKSTTSVGGW 136 Query: 146 IKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198 I+PNDHVDV+ R + +L N+ V+A + E S +L Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVLATGKITGTTNVNLIPENQRDYSNISLL 196 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 + P +A+ LV A + L+L LR+ D++ G+ ++++ Sbjct: 197 VIPEEAEILVLASELGNLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248 >gi|302343420|ref|YP_003807949.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] gi|301640033|gb|ADK85355.1| Flp pilus assembly protein CpaB [Desulfarculus baarsii DSM 2075] Length = 279 Score = 144 bits (364), Expect = 1e-32, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 12/209 (5%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + E + ++++ DL G+ ++ L +P E G A++ L Sbjct: 33 KAQQEAERRVRTAPLVVAAVDLPAGLELSAGRLAVAQWPVEARPPGHF------GAVKPL 86 Query: 94 DGVLVRVPILKGDPIRLEKLVDR-GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G +++ P++KG+P+ KL GL++ + G RA T+ V G +K D V Sbjct: 87 LGRVLQQPVVKGEPLLAGKLSPEGAAAGLAAAIKPGWRAVTISADEVVGVAGYLKVGDRV 146 Query: 153 DVVMVRSL--SERKPTVTVVLSNIRVIAIDHNIDSDER---VLVGSTATLELTPMQAKAL 207 DV+ ++ + L ++ V+A+ H + D + L G TL P A+ L Sbjct: 147 DVIATVKGLDQGKEAVARLALQDLEVLAVSHQAEQDGKKPPKLKGQVLTLLARPADAERL 206 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 A K+ L LR+ D P+ + + + Sbjct: 207 ALAAGEGKILLALRNRQDRQPALTRGARL 235 >gi|237653357|ref|YP_002889671.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] gi|237624604|gb|ACR01294.1| Flp pilus assembly protein CpaB [Thauera sp. MZ1T] Length = 286 Score = 144 bits (363), Expect = 1e-32, Method: Composition-based stats. Identities = 61/263 (23%), Positives = 117/263 (44%), Gaps = 20/263 (7%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ + V+ +F L A +A R + + E+ + + +++K DLAVG +T Sbjct: 6 PRNLIILAVASLFGLGAAWLAARYL---EERATEIELRQQGQMGHAVVAKTDLAVGTPLT 62 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +++ P E + I P + G ++ P G+P+ +L +R LS Sbjct: 63 RDLVAVREVPVEWLHSSAIT----PEQFERAAGAVLAQPARGGEPLVWSQLEERRPATLS 118 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 + L G+RA T+ + +S++ G+++P D +D++ +L +RV+A Sbjct: 119 AQLAPGRRATTIPVDETSSLSGLLRPGDRIDLLATVQRDH-HHLTLPLLQGVRVLATGSR 177 Query: 183 IDSDERVLVGS-------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 E G T TL+L+ +A LVAA+++A+L+ VLR D + + +D Sbjct: 178 TRPGEDDGAGDLLGGSFGTLTLDLSEEEATRLVAARALARLTAVLRHPRDTRTAPLQRTD 237 Query: 236 VWDV-----QEEGKEIQIIKAGV 253 + + +I G+ Sbjct: 238 ALALLGLAPPAREAGVPVIYGGI 260 >gi|296121061|ref|YP_003628839.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296013401|gb|ADG66640.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 390 Score = 143 bits (362), Expect = 2e-32, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 95/241 (39%), Gaps = 21/241 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ ++ ++V+ L+A + + + E I VL+++ ++ G Sbjct: 1 MKMKPMILMLVAVACGLIAMMGVQQTLGS-------RSGEGSGPKIKVLVARKEVQAGTP 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + + + D I ++ +E D RV + +G + ++L ++G G Sbjct: 54 LDETCVGFKLVSKSEAPDDVI------SSKEEYDKRAPRVKLYEGQYVLKKQLGNKGEYG 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----VTVVLSNIRV 176 S +P G R T+ ++ + G++ P D VDV + S + K VL I V Sbjct: 108 ASMEIPPGMRVVTVPVTATMTHSGLLSPGDRVDVQVTYSYTRPKYGKTFKTRTVLQYIEV 167 Query: 177 IAIDH----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 A D + E +L + P Q L AQ L L+LR D P+ Sbjct: 168 WATDSVRMGTEAAKEDSSQSKNVSLLVYPGQGALLQLAQEKGTLHLLLRGRNDKAPAEQT 227 Query: 233 D 233 Sbjct: 228 G 228 >gi|255658703|ref|ZP_05404112.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] gi|260849090|gb|EEX69097.1| Flp pilus assembly protein CpaB [Mitsuokella multacida DSM 20544] Length = 358 Score = 143 bits (360), Expect = 3e-32, Method: Composition-based stats. Identities = 64/276 (23%), Positives = 106/276 (38%), Gaps = 49/276 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+T +V +GV +++ G++ +S + E + + V+ +K D+ VV Sbjct: 17 KITYRQWVVAAGVVSILLGLMVYLAMSGDDQKAAE---KPQTNLVQVVAAKQDIPERTVV 73 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGG 120 ++L+ V P E V +G DV I +GD + K+ VD G Sbjct: 74 KEDMLKVVEVPSELVPEGAFHDVADAIDHP------TSTAIQQGDIMTSRKVYVDIRMAG 127 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + ++P RA T+ I+ + V G P D+VD++++ E ++L ++ ++ I+ Sbjct: 128 FTGIIPPDCRAVTIPINDVTGVSGFAHPGDYVDIMVITGTKENGINGRIILQDVLLLGIN 187 Query: 181 HNID----------------------SDERVLVGS-----------TATLELTPMQAKAL 207 D S VGS TAT+ L P A L Sbjct: 188 RTADLPNTPTGDSSKKDGSQSDKQDASSGTANVGSVNTKASSDTMATATVALKPADALKL 247 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 A L LVLR P D +D G Sbjct: 248 AAESQEGTLYLVLR------PFKPRDMYTFDTDYAG 277 >gi|84516632|ref|ZP_01003991.1| CpaB family protein [Loktanella vestfoldensis SKA53] gi|84509668|gb|EAQ06126.1| CpaB family protein [Loktanella vestfoldensis SKA53] Length = 277 Score = 142 bits (359), Expect = 4e-32, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 107/249 (42%), Gaps = 7/249 (2%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ--TEEVITENPAKFINVLISKGDLAVG 58 M+ + ++V A A + + ++ Q I ++V ++ + G Sbjct: 1 MRAVFGLVLLVGMGLAGFAVYMVNQYMATQTAQLDRARQIAAQALVTVDVYVTTRSVTYG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG- 117 +T + + V +P + + +G +V +P++ + + K+ + G Sbjct: 61 EYLTADDVRLVPYPRDYLPEGTFATEQSLFPQGTQTPRVVVLPMIANELVLTTKVSEPGA 120 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + GL++L+ G RA ++ +++ G+++P+D +DV L + + ++ S +++I Sbjct: 121 SRGLTALVEPGFRAFPVEGRVAAGF-GILRPDDRIDVYWTGRLRDGREVTNLIKSGLQII 179 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 A+ + + + +++TP + L AQ+ +L+L L DL+ + D Sbjct: 180 AVLGDAGNRGGP---QSVVVQVTPEEVALLTQAQNSGQLTLALVGTGDLSETGPVTIDNS 236 Query: 238 DVQEEGKEI 246 + E + Sbjct: 237 ALTGEQDIV 245 >gi|108759025|ref|YP_632818.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] gi|108462905|gb|ABF88090.1| putative Flp pilus assembly protein CpaB [Myxococcus xanthus DK 1622] Length = 271 Score = 142 bits (359), Expect = 5e-32, Method: Composition-based stats. Identities = 51/232 (21%), Positives = 104/232 (44%), Gaps = 12/232 (5%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 ++ ++ +E + V+++ D+ G V+T ++ + PE+ V + + Sbjct: 21 IAYSAIKKKEADVRRGWNLVPVVVAAQDVPEGTVITFEMISQRSVPEQFVTSSVV----R 76 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL-VDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 P++ + V V + GDP+ + + LSS + K RA T++ +++VGG Sbjct: 77 PDSASYIVNQKVLVALQAGDPLLWSQFETTKAAERLSSKVQKKARALTIEAKHTTSVGGW 136 Query: 146 IKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAIDHNIDSD------ERVLVGSTATLE 198 I+PNDHVDV+ R + +L N+ V+A + E + +L Sbjct: 137 IRPNDHVDVIGTFRDPQTDENVAVTLLQNVIVVATGKITGTTNVNLIPENQREYNNISLM 196 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIK 250 + P +A+ LV A + +L+L LR+ D++ G+ ++++ Sbjct: 197 VLPEEAEILVLAVELGQLTLSLRNEDDVDLIEERGRATISTLLSGERTRVLE 248 >gi|170725114|ref|YP_001759140.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] gi|169810461|gb|ACA85045.1| Flp pilus assembly protein CpaB [Shewanella woodyi ATCC 51908] Length = 298 Score = 141 bits (357), Expect = 6e-32, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 94/232 (40%), Gaps = 16/232 (6%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + ++++ V +A + ++++ K V+++ +L G +++ + Sbjct: 11 VLLIIAIVLGSIAAWATKNYFITKEQELIAELSKDNIKMAQVVVATQELRKGDIISEANM 70 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + I P ++ G ++ P+ G P+ L S +L Sbjct: 71 SVRKIQADTLPLDAIH----PKDFNQIVGQMLLEPMSPGRPLMGTYLPGHKAEQFSDILK 126 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVIAID-HN 182 +G+RA T++I ++ GM+ P+DH+D+++ ++L N+ V+A + Sbjct: 127 EGQRAVTINIDELNSTAGMLVPSDHIDLLLSFDEESGDIERKKLQLLLENVTVLATGRQS 186 Query: 183 IDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +D + + +T TL L+ A + A+ K LR+ + Sbjct: 187 VDVNPELADTLYDNPNAYNTVTLALSVHDAARVTLAKEKGKFVTFLRNQTES 238 >gi|167836690|ref|ZP_02463573.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis MSMB43] Length = 351 Score = 141 bits (356), Expect = 8e-32, Method: Composition-based stats. Identities = 59/255 (23%), Positives = 101/255 (39%), Gaps = 32/255 (12%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 ++ + A+ A ++ ++ + DL G+++ + L W Sbjct: 9 ALTVIAAIGAFVMRGLFIAASRPVPPPAPVMARVRAA-----AADLPEGLLLRDSDLVWK 63 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKG 128 + P + V G + + +L G L+R + +G PI ++ G L++ L G Sbjct: 64 SVPRDQVPPGAWAEGEPGGS--DLKGNLLRHMVREGTPIGAGDVISPNAPGFLAAALKLG 121 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTVVLSNIRVIAI 179 RA ++ I S G+I+P D+VDV++ + L V S +RV+A+ Sbjct: 122 MRAISVAIDDVSGNAGLIEPGDYVDVLLTQQLGTSGGPPVPPDHAIVSETVASRVRVLAV 181 Query: 180 D---HNIDSD----------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-- 224 D T TLE+TP A+A+ A + LSL LRS A Sbjct: 182 GSVFQRPKDDAAQTNSNSNSNSSARARTVTLEVTPFYAQAITLASHLGSLSLALRSFAVS 241 Query: 225 DLNPSSSEDSDVWDV 239 + NP+S V Sbjct: 242 ERNPASLAPEAPAPV 256 >gi|294102190|ref|YP_003554048.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] gi|293617170|gb|ADE57324.1| Flp pilus assembly protein CpaB [Aminobacterium colombiense DSM 12261] Length = 288 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 58/256 (22%), Positives = 120/256 (46%), Gaps = 23/256 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R + ++VS + ++AG++ + + + ++ I + ++V+++ + Sbjct: 1 MK-KRGIFLIVSLLLGIMAGLLVYQQIRSYKLK----IARAERELVSVVVAARPKDAFSI 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 +T ++ V P ++ G + ++ E+ G + + +GDP+ KL D Sbjct: 56 ITAEDVKVVRMPRSSIPTGEVL------SLDEVVGKASMLALSEGDPVLKGKLSLDPEKL 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSERKPTVTVVLSNIRVIA 178 G++ LP G+ A + I A GG+++P D+VDV + R PT ++LS ++V+A Sbjct: 110 GVAFQLPDGRVAIALPIDEVIAAGGLLRPGDYVDVFHVYREKDAVSPTSRLLLSRVKVLA 169 Query: 179 IDHNIDS-------DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 + + E+ ++ +A +E++P +A AQS+ + L LR N + Sbjct: 170 LGGVLTRKEEKEGTKEKEMLARSAVVEVSPEEAAVAAWAQSLGSVWLALRPA---NEETL 226 Query: 232 EDSDVWDVQEEGKEIQ 247 + V+ E E Q Sbjct: 227 TPAVVYKGPEVSPEPQ 242 >gi|251789645|ref|YP_003004366.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] gi|247538266|gb|ACT06887.1| Flp pilus assembly protein CpaB [Dickeya zeae Ech1591] Length = 308 Score = 141 bits (356), Expect = 9e-32, Method: Composition-based stats. Identities = 55/270 (20%), Positives = 109/270 (40%), Gaps = 40/270 (14%) Query: 1 MKLTRLMGIVVSGVFA-LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK+ + + V+ + A ++A I+ +L Q P + VL++ DL+ G Sbjct: 1 MKINSTLLLSVALIAAGVMALIVRSQLPGTPAAQQTPAPAPIPVEKTAVLVTARDLSPGD 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 + + + W + + + +L G +R I G P+ +V Sbjct: 61 FIDGSAVRWQE--TDQPVSRTFYFIRGKDQESQLYGATLRGKIPAGTPLNNNSVVRPNEP 118 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTV-------- 167 G ++++L G RA ++ S+ ++ G++ D+VD+++ + +PT Sbjct: 119 GFIAAVLRPGMRAISIPTSVVASNAGLVSAGDYVDIILSLRRDDEVALQPTSQQPVPPPV 178 Query: 168 ---TVVLSNIRVIAIDHNIDS----------------------DERVLVGSTATLELTPM 202 V N+RV+A+++ D+ +R + + TLE TP Sbjct: 179 VGAQTVARNLRVLALNNQTDAITSMRPRQDINGAEPAQNTPQGRQRTPIYQSITLEATPK 238 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 QA+ L A+ V L + RS D + + Sbjct: 239 QAEVLTVAKEVGLLQMAQRSALDTSDDAEA 268 >gi|50119733|ref|YP_048900.1| hypothetical protein ECA0788 [Pectobacterium atrosepticum SCRI1043] gi|49610259|emb|CAG73702.1| putative exported protein [Pectobacterium atrosepticum SCRI1043] Length = 314 Score = 141 bits (356), Expect = 1e-31, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 103/272 (37%), Gaps = 44/272 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S ++ + P K + VL++ L G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPMVVKVPEK-VAVLVAAKALHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L W + + + ++ L G +R + +G P+ LV G Sbjct: 60 IDSASLRWDE--TDKPVSRTFNFIRGKDSQSLLLGATLRETVAEGTPLTSNVLVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQAELPPSRNQPVVMPLL 177 Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDVAEDGTVLDATAKSRESAVRSRPTTYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TP QA+AL A+ + L L LRS + + Sbjct: 238 TPQQAEALAVAKELGMLHLALRSATQDDIADP 269 >gi|114797097|ref|YP_759868.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] gi|114737271|gb|ABI75396.1| putative Flp pilus assembly protein CpaB [Hyphomonas neptunium ATCC 15444] Length = 295 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 51/233 (21%), Positives = 93/233 (39%), Gaps = 18/233 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK L+ + +S A +S + + + +++ + G + Sbjct: 1 MKAIPLISLGLSLALGAGAIFFGREFMSGDGGEANAAVAAPAIAMTQIAVARATIEPGKL 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + +++E +PE V G + V G++V G+P+ EK+ G+ Sbjct: 61 IDASMVEMRDWPESAVPAGAMRAVTDLGETAYSRGLVV-----AGEPLLAEKIDTTGSVL 115 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-----------VT 168 L++ + G RA ++ ++ + V G + P D VDV + + Sbjct: 116 TLAANIQPGMRAVSVVVANDTGVAGFVLPGDRVDVNEFVEAKDARGAPEDSRRSADVFAQ 175 Query: 169 VVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 VL ++V+A+D + E +T TLE+TP A L AA A L L L Sbjct: 176 PVLKGVKVLAVDQTFEEGLEGAYPSNTVTLEVTPQDALLLGAASRRAALGLAL 228 >gi|121607247|ref|YP_995054.1| SAF domain-containing protein [Verminephrobacter eiseniae EF01-2] gi|121551887|gb|ABM56036.1| SAF domain [Verminephrobacter eiseniae EF01-2] Length = 306 Score = 141 bits (355), Expect = 1e-31, Method: Composition-based stats. Identities = 41/227 (18%), Positives = 99/227 (43%), Gaps = 8/227 (3%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 Q + + + I +L++K +L G ++ + P + I P + Sbjct: 41 QVAAIEARSKKETIALLVAKRELKKGDLLATGNVAVREIPLDYAHSNAI----APEHFER 96 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 ++G + + G+ + + R S+ + G+RA T+ + +++ G+++P D + Sbjct: 97 IEGQGIEHGLKAGEMLLWSLMQTRKAATFSARIEIGRRAITVHVDEINSISGLLEPGDAI 156 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV---LVGSTATLELTPMQAKALVA 209 D+++ +K +L N++V+A D + ST TL+ T QA++++ Sbjct: 157 DLMVTLDRGGKK-ITFPLLQNVQVMATGQRSADDPKSGERRQYSTVTLDTTQAQAQSVIV 215 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVN 256 A+ K++ +LR+ D + + + + + + + Q + G Sbjct: 216 AREAGKITALLRNPQDTQVQAGDSAAIAALLGQAGDAQSLADGAAGR 262 >gi|37680195|ref|NP_934804.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] gi|37198942|dbj|BAC94775.1| Flp pilus assembly protein CpaB [Vibrio vulnificus YJ016] Length = 279 Score = 140 bits (352), Expect = 2e-31, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 96/271 (35%), Gaps = 25/271 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 + V ++ + + Q VL + LA G + L Sbjct: 5 YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERENLV 64 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126 W + ++++ G + I + E L+ LS+L+ Sbjct: 65 WKEVSLAERESLGEVFLQPVFELEQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVVLSNIRV 176 G RA ++++ +A G+++P + VDV++ + V VL NI + Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184 Query: 177 IAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +AI + + ++ T E++ A+ LV A + +LSLVLR D + Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244 Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253 ++ Q+ + + +I+ V Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275 >gi|27365650|ref|NP_761178.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|320156052|ref|YP_004188431.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] gi|27361798|gb|AAO10705.1| Flp pilus assembly protein CpaB [Vibrio vulnificus CMCP6] gi|319931364|gb|ADV86228.1| flp pilus assembly protein CpaB [Vibrio vulnificus MO6-24/O] Length = 279 Score = 139 bits (351), Expect = 4e-31, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 95/271 (35%), Gaps = 25/271 (9%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 + V ++ + + Q VL + LA G + L Sbjct: 5 YMAVFAALSIALFLAGFVWLDTSQAQPPSQPLSTVEHKAKVLTTNRALAKGSFIERESLV 64 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLP 126 W + + ++ G + I + E L+ LS+L+ Sbjct: 65 WKEVSLAERESLGEVFLQPVFELDQIAGSVAVQFIPADSVLSPEMLLRPEQSDFLSALVK 124 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----------TVTVVLSNIRV 176 G RA ++++ +A G+++P + VDV++ + V VL NI + Sbjct: 125 PGMRAISIELDPMAAGLGLLRPGNKVDVLLTSQSEIDQDANGTPIYNNMAVETVLQNIHL 184 Query: 177 IAID------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +AI + + ++ T E++ A+ LV A + +LSLVLR D + Sbjct: 185 LAIGNQYSPHQKPEKSAKSYDPTSVTFEVSLQDAEKLVLASKLGELSLVLRGNNDQTEVA 244 Query: 231 SED--------SDVWDVQEEGKEIQIIKAGV 253 ++ Q+ + + +I+ V Sbjct: 245 NKPLKWAKDISGAYDLEQQPTQSVTVIRGNV 275 >gi|330830433|ref|YP_004393385.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] gi|328805569|gb|AEB50768.1| Flp pilus assembly protein CpaB [Aeromonas veronii B565] Length = 296 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 23/232 (9%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 S + + P + VL++ + G + P L W A PE + + Sbjct: 30 SGASPRDPPAESLAPDRVAQVLVAAHRVQAGSFIHPEDLRWQALPEAEERNLPGLFLFGF 89 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMI 146 + L G LV + G + + LV + LS+++ G RA T+ + +A G+I Sbjct: 90 TDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAASHGLI 149 Query: 147 KPNDHVDVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLVGS--- 193 +P + VDV++ + + + ++L++I+++AID + +D L G+ Sbjct: 150 RPGNRVDVILTSKHARQHNAQGAEVTSNQSAEIILTDIKLLAIDAQV-TDIAALNGNPAA 208 Query: 194 -------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 T EL P A L+ A + +L+LVLRS P+ S + + Sbjct: 209 QDNFDQVAVTFELPPRAAARLLLAHRLGELALVLRSAQ-SAPAGSPAMALPE 259 >gi|127511580|ref|YP_001092777.1| SAF domain-containing protein [Shewanella loihica PV-4] gi|126636875|gb|ABO22518.1| SAF domain protein [Shewanella loihica PV-4] Length = 298 Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats. Identities = 50/281 (17%), Positives = 116/281 (41%), Gaps = 25/281 (8%) Query: 1 MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 MKL + + +V++ + ++ + + +T++ +V+++ L Sbjct: 1 MKLKSIDFNWVLLVIALILGGISAWATKNYFIAKEQELRDELTKDNIAMADVIVATQPLK 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +++ + + + I P+ E+ G ++ P+ G P+ L Sbjct: 61 KGDIISQANMSVRQIRADTLPLDAIH----PSRFGEVAGQMLLQPMAPGRPLIETYLPGM 116 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSN 173 S +L +G+RA T+DI ++ GM+ P+DH+D+++ R ++L + Sbjct: 117 RVAQFSDILKEGQRAVTIDIDEINSSAGMLVPSDHIDLLLSFKEEGRNGERKRLQLLLED 176 Query: 174 IRVIAIDHN-IDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + V+A ID + + +T TL L+ A + A+ +LR+ Sbjct: 177 VTVLATGRRSIDVNPELVDTLYDNPNAYNTVTLALSVNDAARVSLAKQKGDFVTLLRNQK 236 Query: 225 DLNPS---SSEDSDVWDVQEEGKE--IQIIKAGVIVNKDGE 260 + + S + +++ +EE E +++I G + + Sbjct: 237 ESSALEFISMHEGQLFNREEENHELAVEVITGGSGIKTSTQ 277 >gi|167620126|ref|ZP_02388757.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis Bt4] Length = 234 Score = 136 bits (344), Expect = 2e-30, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 93/235 (39%), Gaps = 34/235 (14%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNA------------- 89 + + V ++ DL G+++ L W +V G + + Sbjct: 1 PQQVRVRVAAADLPAGLLLRDVDLGWKTMARGDVPAGALIEGDARGDGRTAGAAVDASAA 60 Query: 90 -MQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 +L G L+R P+ +G P+ ++ G L++ L G RA ++ I S G+I+ Sbjct: 61 AAGDLKGDLLRHPVREGMPLGPADVILPSAPGFLAAALKPGMRAISVAIDDVSGNAGLIE 120 Query: 148 PNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVGS 193 P D+VDV++ + L ER + + +RV+A+ D+ + Sbjct: 121 PGDYVDVLLTQQLAAPGGAPADPERAVESETIAARVRVLAVGSAFQRPKDDAAQPNTRAR 180 Query: 194 TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQI 248 T T E++ A+ + + LSL LRS A +S+ V E + Sbjct: 181 TVTFEVSSHDAQVITVGAHLGALSLALRSFA-----TSDRGAVGLASAEPPAPPV 230 >gi|227326301|ref|ZP_03830325.1| hypothetical protein PcarcW_02899 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 314 Score = 135 bits (341), Expect = 5e-30, Method: Composition-based stats. Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 44/275 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEPT-KVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + L W E + V+ + L G +R P+ +G + +V+ G Sbjct: 60 LDSSSLRWQE--TEKSVSRAFNFVYGQDKQSLLLGATLREPVKEGSWLSSNVVVNPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLRKGMRAISVPTSAIASNAGLVSAGDRVDVILSMKRDDQSELPASRNQPVVMPLL 177 Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPVYPRFDTAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDSVDPATG 272 >gi|301165541|emb|CBW25112.1| putative pilus assembly-related protein [Bacteriovorax marinus SJ] Length = 271 Score = 135 bits (340), Expect = 6e-30, Method: Composition-based stats. Identities = 56/272 (20%), Positives = 112/272 (41%), Gaps = 30/272 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + AL+ + AM +V + + I + K +V+I+K D+ ++ + + + Sbjct: 5 ALTLALIIAVFAMFMVYTYIDDEKTKIIKKYGKEQSVVIAKVDIKELELIDDSKVTVTSM 64 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130 P V + + +E+ + VPILKG+ I ++ GLS + GKR Sbjct: 65 PSNFVHEKAFKTI------KEIQNTVATVPILKGEQITKPRVSWPDERSGLSRQVAVGKR 118 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSNIRVIAIDHNIDSDE 187 A ++D+S ++VG +IKP D VD++ + + + +L ++ +++ +I + Sbjct: 119 AISLDVSERASVGKLIKPGDRVDILAGIDYAGGRKDLQKMKTILQDVLILSTGKSISGNL 178 Query: 188 RVLVGS-----------------TATLELTPMQAKALV--AAQSVAK-LSLVLRSIADLN 227 ++ T TLEL P + + LV + + L LR+ D Sbjct: 179 PIIGVKTPRVIKKMKLNTYSDYGTVTLELDPYEVQKLVFILSYNSGTPPYLALRNNTDKE 238 Query: 228 PSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDG 259 + + ++D+ E I G Sbjct: 239 VVRIKSTKLFDILGEDASEAKIFFSEKYKSQG 270 >gi|117619605|ref|YP_855990.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117561012|gb|ABK37960.1| Flp pilus assembly protein CpaB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 296 Score = 135 bits (339), Expect = 7e-30, Method: Composition-based stats. Identities = 57/236 (24%), Positives = 100/236 (42%), Gaps = 25/236 (10%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + P Q E A+ VL++ + G + P L W P + Sbjct: 27 APQTAVPPGEQAPE--PAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAEEMNLPGL 84 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSA 141 + + L G LV + G + + LV + LS+++ G RA T+ + +A Sbjct: 85 FLFGFTDTKALKGSLVTRTLEAGQIVSADDLVRPEQSHYLSAMMAPGMRAVTLALGREAA 144 Query: 142 VGGMIKPNDHVDVVMVRSLSER----------KPTVTVVLSNIRVIAIDHNIDSDERVLV 191 G+I+P + VDV++ + + K + ++L++I+++AID + +D L Sbjct: 145 SHGLIRPGNRVDVILTSKHTHQRNAQGAEVTSKQSAEIILTDIKLLAIDAQV-TDIAALN 203 Query: 192 GS----------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 G+ T EL P A L+ A + +L+LVLRS P+ SE + Sbjct: 204 GTVAAQDNFDQVAVTFELAPSAAARLLLAHRLGELALVLRSAQ-AAPTGSEAVTLP 258 >gi|332798621|ref|YP_004460120.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1] gi|332696356|gb|AEE90813.1| Flp pilus assembly protein CpaB [Tepidanaerobacter sp. Re1] Length = 264 Score = 135 bits (339), Expect = 1e-29, Method: Composition-based stats. Identities = 49/273 (17%), Positives = 97/273 (35%), Gaps = 46/273 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +K RL+ ++ + V + +I L + +K I V+ + ++A Sbjct: 3 LKKIRLIALIAALVTCISLYLIVSNLQKGGSIALN-------SKTITVVTATQNIAPYTK 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 +T ++ + + + ++ G + + I G+ I ++ + Sbjct: 56 ITAEMVSAQNITASDGIQNYFT------QIGDVVGKICKSDIYAGEVITSNRIAGEKDIS 109 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------- 168 GL++ L G RA T+ + + V IK ++VDV+ V + T Sbjct: 110 LGLATQLENGMRAVTIAVDVEQGVAATIKAGNYVDVIYVNKVDGGSGDTTASSYLNSAAG 169 Query: 169 --------------------VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 L N++V+A+D+ D+ + TL +TP QA L Sbjct: 170 AKNPVNSQTLYHNYGQYFAVTALQNVKVVALDNVFYKDDTKTSYQSVTLGVTPEQAAQLA 229 Query: 209 A-AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 + L LR D S +V++ Sbjct: 230 LMCDGEGTIRLSLRPQEDKTMISEPRGEVFENT 262 >gi|261820213|ref|YP_003258319.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] gi|261604226|gb|ACX86712.1| Flp pilus assembly protein CpaB [Pectobacterium wasabiae WPP163] Length = 312 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 59/265 (22%), Positives = 104/265 (39%), Gaps = 44/265 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P K VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALVVRSHLSSAPPPPPPVVVQAPEKTA-VLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + L W EE V + V ++ L G +R + +G + LV + G Sbjct: 60 IDSASLRWQ-VTEEPV-SRTFNFVRGKDSQSLLFGATLRETVTEGSALTNNVLVRQNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 L+++L KGKRA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FLAAVLGKGKRAISVPTSAVASNAGLVAAGDRVDVILSMKRDDQPELPASRNQPVVMPLL 177 Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDRTGTPVYPRLDAMEDGATLDAAAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIA 224 TP QA+AL A+ + L L LRS Sbjct: 238 TPQQAEALAVAKELGILHLALRSAT 262 >gi|227114875|ref|ZP_03828531.1| hypothetical protein PcarbP_18020 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 314 Score = 134 bits (337), Expect = 1e-29, Method: Composition-based stats. Identities = 59/310 (19%), Positives = 112/310 (36%), Gaps = 55/310 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P K VL++ DL G Sbjct: 1 MKVNSTYVLSGALVLAGIVALMVRSHLSSEPPAPPPVVVKAPEK-AAVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + P+ L W + + V + L G +R + +G + +V G Sbjct: 60 IDPSSLRWQT--TDEPVSRSFNFVRGQDNQSLLLGATLRETVTQGSWLSSNVVVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPASRNQPVVMPLL 177 Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKTGTPIYPRFDAAEDGTVLDATAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE-----------DSDVWDVQEEGKEIQI 248 TP QA+AL A+ + L L LRS + +D++ G + Sbjct: 238 TPQQAEALAVAKELGILHLALRSADLDDVVDPTTGRPHVTTVPLATDIYGAFSAGSGERK 297 Query: 249 IKAGVIVNKD 258 +K KD Sbjct: 298 VKIYRAAQKD 307 >gi|113867003|ref|YP_725492.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113525779|emb|CAJ92124.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 343 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 54/256 (21%), Positives = 104/256 (40%), Gaps = 27/256 (10%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITE-NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 L+ I L E++ + N + + V++ + A G V+ N P + Sbjct: 26 GLLTLWIYHFLSGREAALKEQLAAQLNEGRRVAVMVPVRNAAPGTVIDGNGFAAREIPAD 85 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134 V++ I ++ ++ + + + +G P+R + + S LL GKRA T+ Sbjct: 86 LVYEDMI----LASSFDKVANLRLVRQVRQGQPVRRADVEALQSRDFSDLLKPGKRAFTI 141 Query: 135 DISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 ++ + ++ M+KP +HVD+ ++ S K T +++S++ V+A ++ + Sbjct: 142 EVDMVNSTAKMLKPGNHVDLFLISSTSPTAAGTDKQTARLLMSDMLVLATGQDVRPRDYG 201 Query: 190 LV-----------------GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + TL ++P QA L AQ V L VLR+ AD + Sbjct: 202 EAMAAQAAEGAEGVDTNPDYDSLTLMVSPEQAARLALAQKVGSLRAVLRNAADKTATPQI 261 Query: 233 DSDVWDVQEEGKEIQI 248 + G E I Sbjct: 262 AVSEHALFAGGDEAAI 277 >gi|296134297|ref|YP_003641544.1| Flp pilus assembly protein CpaB [Thermincola sp. JR] gi|296032875|gb|ADG83643.1| Flp pilus assembly protein CpaB [Thermincola potens JR] Length = 257 Score = 133 bits (336), Expect = 2e-29, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 102/264 (38%), Gaps = 43/264 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + V+ AL+ + + V T+ V+++ ++ V Sbjct: 1 MSNKKI--LFVAVFLALLTTLAMNYYLEQVKKAATNVTTKK------VVVANVNIPARTV 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-- 118 +T +++ PEE V + D +++ G + I G+ + EK++ + Sbjct: 53 ITGDMVSVKDVPEEFVHPNAVLDE------EQVIGFVSGSDISAGEQVLREKILRKEGNP 106 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------T 166 LS +P G RA ++ I+ + VGG+++P D VDV+ L P Sbjct: 107 VSLSYQVPLGSRAMSVPINEVTGVGGLVRPGDRVDVIGTIELETSNPASNQQTGPTQTTV 166 Query: 167 VTVVLSNIRVIAIDHN---------------IDSDERVLVGSTATLELTPMQAKALVAAQ 211 V+L N+ V+A+ N +++ TL + + +AL Sbjct: 167 AHVLLQNVEVLAVGDNFTPATNRAVNQGKEDAKNNQSDTGAKNVTLAIPADKMQALTLML 226 Query: 212 SVAKLSLVLRSIADLNPSSSEDSD 235 K++L LRS D + D Sbjct: 227 DHGKVTLALRSPLDQSRYDRPPFD 250 >gi|253687067|ref|YP_003016257.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753645|gb|ACT11721.1| Flp pilus assembly protein CpaB [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 314 Score = 133 bits (334), Expect = 3e-29, Method: Composition-based stats. Identities = 53/272 (19%), Positives = 104/272 (38%), Gaps = 44/272 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK+ + + V A + ++ +S V+ + P K I VL++ DL G Sbjct: 1 MKVNSTYVLSGAFVLAGIVALVVRSHLSSEPPAPPPVVAKAPEK-IAVLVAAKDLHPGDF 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + + W + + V ++ L G +R + +G + +V G Sbjct: 60 IDSSSVRWQT--TDESVSRSFNFVRGRDSQFLLFGATLRETVKEGTQLSSNVVVKPNEPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------------- 165 ++++L KG RA ++ S ++ G++ D VDV++ ++ Sbjct: 118 FVAAVLHKGMRAISVPTSAIASNAGLVSAGDRVDVILSMRRDDQSELPVSRNQPVVMPLL 177 Query: 166 TVTVVLSNIRVIAIDHNIDS--------------------------DERVLVGSTATLEL 199 ++ ++RV+A++ + + R T TLE+ Sbjct: 178 ASQTIVRDLRVLALNDKVGTPVYPRLDAMEDGAALDAAAKSRESAVRSRPATYQTVTLEV 237 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TP QA+AL A+ + L L LRS + Sbjct: 238 TPQQAEALTVAKELGILHLSLRSATQDDVVDP 269 >gi|304311184|ref|YP_003810782.1| Flp pilus assembly protein [gamma proteobacterium HdN1] gi|301796917|emb|CBL45130.1| Flp pilus assembly protein [gamma proteobacterium HdN1] Length = 283 Score = 131 bits (330), Expect = 9e-29, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 88/216 (40%), Gaps = 14/216 (6%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + + Q + I + + I V+++ DL +G VVT P+ V Sbjct: 26 FLTQNYIKTEVTQRNKAIDQQ-REAIQVVVASADLNIGDVVTLKNAVVRDIPKTFVPSEA 84 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + N L+G ++ + G+ I + G+ SLL G+RA T+ + Sbjct: 85 VT---PANFAATLEGRQLKYKVKYGEVILPMHVSSTKIEGIVSLLEPGERAITIPVGKED 141 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---------DSDERVLV 191 + G ++P VD+ + T L ++VIA + D + Sbjct: 142 TISGFLRPGSRVDLFLTLKDGAVSRTA-PFLQRVKVIATGTELNDGIPRELKDPKKLQKT 200 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S TL +TP+QA L+ +QSV +++VLR D + Sbjct: 201 FSDVTLAVTPVQATKLIHSQSVGDIAMVLRRPEDKS 236 >gi|307726634|ref|YP_003909847.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307587159|gb|ADN60556.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 365 Score = 131 bits (330), Expect = 1e-28, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 31/268 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNI 65 + + + A + + ++ + ++ I N + V++ DL G ++ + Sbjct: 16 VLLFAAVCVAGGLTFLLYKYLNEREARLKQQIAANKVHDAVQVVVPARDLPAGTPLSSSD 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ +P+ ++ + P+ +G P+R + S +L Sbjct: 76 FVSREIQGDLV----YDDMIRPDNFEQYRTSHLVKPVRRGLPLRAGDIDALRGRDFSDIL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179 P G+RA T++I ++ +++P + VDV + S+ + +++ N+ V+A Sbjct: 132 PAGQRAVTVEIDTVNSTALLVRPGNRVDVYWIGKAFHQDRTSDDQRVAQLIMPNVLVLAT 191 Query: 180 DHNI---------DSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219 ++ + D+ S T TL++ A + AQ + L L+ Sbjct: 192 GQDLRPRDAGEASEQDQANANSSAMSRQQGMGYTTVTLQVPAEDAGRIALAQKIGGLRLI 251 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 LR+ D + ++ DV + Sbjct: 252 LRNADDKASAGPVLTEEQDVFADPATFN 279 >gi|330819175|ref|YP_004348037.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] gi|327371170|gb|AEA62525.1| Flp pilus assembly protein CpaB [Burkholderia gladioli BSR3] Length = 354 Score = 130 bits (327), Expect = 2e-28, Method: Composition-based stats. Identities = 54/276 (19%), Positives = 108/276 (39%), Gaps = 34/276 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+GI V+ + LVS ++ E ++V++ + D+ G + + Sbjct: 18 LIGIAVAAAGGITWVTYRYMLVSEARIKA-EAAERREGPGVSVVVPRADVPAGTPLDSAV 76 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ Q + ++ P+ +G P+RL+ + S L Sbjct: 77 FVAREISADLV----YDDMLQVDDFTHHRNAVLVKPVRRGRPLRLQDVDATRARDFSDTL 132 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------ERKPTVTVVLSNIRV 176 G RA T+ I ++ M++P + VD+ V +LS ++ +++ +RV Sbjct: 133 AAGMRALTLPIDAINSTDSMLRPGNRVDLYWVGTLSFVTRGGDPAGDTKSIRLLMPGVRV 192 Query: 177 IAIDHNIDSDERVLVGS------------TATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +A H++ + T TL++ +A + AQ + L LVLR+ Sbjct: 193 LATGHDVRPRDAGEAARDMADGARRDGYGTVTLQVPVAEAARIALAQKLGGLRLVLRNSK 252 Query: 225 DLNPSSSEDSDVWDVQ--------EEGKEIQIIKAG 252 D D ++ ++ + ++II G Sbjct: 253 DPGDPVQRGLDETELFAARADAPADDRERVEIITGG 288 >gi|313902402|ref|ZP_07835805.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] gi|313467333|gb|EFR62844.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] Length = 236 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 54/245 (22%), Positives = 107/245 (43%), Gaps = 17/245 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R++ ++ V A +A I + + V+++ + Sbjct: 1 MSRGRMVRYLLLPVLAGLAVTILVAF-----YVRVPAGEAGKEPRVPVVVATRPVPAQTP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNG 119 + ++L P + V G + + +E G + +VP+ +G+ + KL G+ Sbjct: 56 LQADMLAVRQVPADVVGRGAVGRI------EEAVGKVTKVPLAEGEFVLTSKLARGDGSD 109 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRV 176 GL+ LP+G RA T+ AVGG ++P D VDV++ +P +++ N+ V Sbjct: 110 GLAYRLPEGTRALTIAADPVLAVGGFVQPGDRVDVLIGLPGGKPGVEQPEARILVENVLV 169 Query: 177 IAIDHNIDSDERVLVG--STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 +A+ + ++ + TL + P A A+V A+ +L L+LR D P+ + + Sbjct: 170 LAVQQDTAAEGEPAGDGLTHLTLAVAPAHAAAIVLAEQEGRLRLLLRPAGDGRPAGAVTA 229 Query: 235 DVWDV 239 + D+ Sbjct: 230 RLADL 234 >gi|319940439|ref|ZP_08014784.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] gi|319806065|gb|EFW02814.1| hypothetical protein HMPREF9464_00003 [Sutterella wadsworthensis 3_1_45B] Length = 321 Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats. Identities = 61/288 (21%), Positives = 116/288 (40%), Gaps = 44/288 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-----LISKGDLA 56 K + L+ + + V A A +A L++PH + + A V + + Sbjct: 4 KTSSLLLLGFAVVLAGCAAFVARGLLAPHAAERPAAAAQAKASEAQVPPVWAAAAAKPVE 63 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPN--AMQELDGVLVRVPILKGDPIRLEKLV 114 G ++ ++WV + I + A L G VR + +G+ I + ++ Sbjct: 64 PGEFLSGTAIKWVEMKADEAPASAISAKRPGDRTAAALLMGATVRRSVPQGELITQDDVL 123 Query: 115 DRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------------RS 159 GN G L+++L GKRA ++ S S+ G++ D VDV++ ++ Sbjct: 124 YPGNPGFLAAVLSPGKRAVSIPTSAVSSNSGLVSAGDWVDVILTLKRETAEAMADQQDKT 183 Query: 160 LSERKPTVTVVLSNIRVIAID--------------HNIDSDERVLVG------STATLEL 199 K +L+N+RV+A++ D+ + T TLE+ Sbjct: 184 SGMTKLAAQTILTNVRVLALNNSTESIAPQPETAPQKTDAKKTASTAARRVDYRTITLEV 243 Query: 200 TPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 TPM+A+AL A+ L + +R + P + + + V E+ + Sbjct: 244 TPMEAQALAVAKEAGDLQVSIRGL--REPETKDAAGTSAVNEKTAAVT 289 >gi|119773844|ref|YP_926584.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] gi|119766344|gb|ABL98914.1| Flp pilus assembly protein CpaB-like protein [Shewanella amazonensis SB2B] Length = 298 Score = 128 bits (321), Expect = 9e-28, Method: Composition-based stats. Identities = 44/246 (17%), Positives = 100/246 (40%), Gaps = 20/246 (8%) Query: 1 MKLTRL----MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLA 56 M+ R+ + + ++ V +A + ++ + K ++V+++ +L Sbjct: 1 MQSKRIDFNWVLLGIALVLGSLAAWATKNYFIVKEQEIRAELSNSNVKMVDVVVATQELR 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +V + + + + I +P+ E+ G ++ + G P+ L Sbjct: 61 KGDIVDETNMSVRSIRADVIPLDAI----RPSQFNEVAGQMLLSEMSPGRPLISAYLPGF 116 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSN 173 S LL +G+RA T+DI+ ++ GM+ P+D VD+ + ++ + +++ Sbjct: 117 KTRQFSDLLQEGQRAVTIDINEENSTAGMLVPSDLVDLFLSYTVENGDSERVKMELLIEK 176 Query: 174 IRVIAIDHNI---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +V+A + +T TL L+ A + A+ K +LR+ A Sbjct: 177 AQVLATGKRSIDVHPELVNSIYDNPDSYNTVTLALSTEDAIRVSLAKGRGKFVTLLRNKA 236 Query: 225 DLNPSS 230 + P + Sbjct: 237 ESAPVA 242 >gi|297581607|ref|ZP_06943529.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] gi|297534014|gb|EFH72853.1| flp pilus assembly protein CpaB [Vibrio cholerae RC385] Length = 294 Score = 127 bits (319), Expect = 2e-27, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 112/268 (41%), Gaps = 27/268 (10%) Query: 20 GIIAMRLVSPHHVQTEEVITENPA--------KFINVLISKGDLAVGMVVTPNILEWVAF 71 I+++ + T +++ A L +K + G ++ WV Sbjct: 16 AILSIAWMQNSRPSTSPSVSKPTAVSSLPEKAATPRALAAKYPVQAGALLRAQDFHWVEL 75 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKR 130 E+ + + + L+G L+ + + + ++ + +S++L GKR Sbjct: 76 GSEHNASLNDLFLENFSQLDALEGSLITRHQDESQLLNVNDIIRPEQSHYVSAMLAPGKR 135 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAID----- 180 A T++++ + G+++P + VDVV+ S S K T VL +R++AI Sbjct: 136 AVTLELTQAGVSHGLLRPGNWVDVVLTNESNVESASTPKYAATTVLEGVRLLAIGSVVTE 195 Query: 181 ----HNIDSDERVLVGST--ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 ++++ T E++P AK L+ AQ + LSLVLRS + + + E+ Sbjct: 196 FIAKQSVENGANPNSYEPVRVTFEVSPSDAKHLLLAQRLGVLSLVLRSQFESDLAEMEEG 255 Query: 235 DV-WDVQ-EEGKEIQIIKAGVIVNKDGE 260 + WD Q E + + + DGE Sbjct: 256 SILWDEQVSESFNPESLPRKTVRIFDGE 283 >gi|296158513|ref|ZP_06841343.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295891081|gb|EFG70869.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 365 Score = 126 bits (318), Expect = 2e-27, Method: Composition-based stats. Identities = 50/286 (17%), Positives = 110/286 (38%), Gaps = 44/286 (15%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNI 65 + + ++ + A + + ++ + + + + + + V++ D VG ++ Sbjct: 16 VLLFLAVLVAGGLTFLLYKYLNDREKKLKADLDAHRVRAGVTVVVPAQDAPVGTPLSSGN 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ + + ++ + P+ +G P+R + S +L Sbjct: 76 FVAREIAGDLV----YDDMIRADGFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDIL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179 G RA T++I ++ +++P + VDV V + S+ K +V+ N+ V+A Sbjct: 132 RPGTRALTVEIDTVNSTALLLRPGNRVDVYWVGKVFHENRTSDEKKVAQLVMPNVLVLAT 191 Query: 180 DHN---------IDSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219 + D+ S T TLE+ + AQ + L L+ Sbjct: 192 GEDMRPRDAGEAAQQDQANANSSAMSRQTGMGYTTVTLEVPVDDVARIALAQKIGGLRLI 251 Query: 220 LRSIAD---LNPSSSEDSDVW----------DVQEEGKEIQIIKAG 252 LR+ D PS +++SDV+ + +++I G Sbjct: 252 LRNSEDKGADGPSLAQESDVFIDPARGHVTSGTGPAPQTVEVISGG 297 >gi|323529160|ref|YP_004231312.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323386162|gb|ADX58252.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 363 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 44/267 (16%), Positives = 100/267 (37%), Gaps = 31/267 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF-INVLISKGDLAVGMVVTPNI 65 + + V+ A + + ++ + + I N + I V++ DL G ++ + Sbjct: 16 VLLFVAVCVAGGLTFLLYKYLNERETKLKAEIAANKVRTDIAVVVPARDLPAGTPLSSSD 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ +P + + P+ +G P+R + S +L Sbjct: 76 FVSREIQGDLV----YDDMVRPENFDQYRASHLVKPVRRGLPLRAADIDALHGRDFSDVL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179 P G+RA T++I ++ +++P + VDV + S+ + +++++ V+A Sbjct: 132 PAGQRAVTVEIDTVNSTALLLRPGNRVDVYWIGKAFHQDHTSDDRRVAQLMMADALVLAT 191 Query: 180 DHNIDSDERVLVG--------------------STATLELTPMQAKALVAAQSVAKLSLV 219 ++ + +T TL++ + AQ + L L+ Sbjct: 192 GQDLRPRDAGEAAEHDQANANSSAMSRQEGMGYTTVTLQVPAEDVGRIALAQKIGGLRLI 251 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEI 246 LR+ D + DV + + Sbjct: 252 LRNADDKATGGPALVEEKDVFIDPANV 278 >gi|91777218|ref|YP_552426.1| putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] gi|91689878|gb|ABE33076.1| Putative Flp pilus assembly CpaB [Burkholderia xenovorans LB400] Length = 363 Score = 124 bits (312), Expect = 1e-26, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 108/268 (40%), Gaps = 34/268 (12%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-FINVLISKGDLAVGMVVTPNI 65 + + ++ + A + + ++ + + + + + + V++ D+ VG ++ Sbjct: 16 VLLFLAVLVAGGLTFLLYKYLNDREKKLKADMDAHRVRAGVTVVVPAQDVPVGTPLSSGD 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ + + ++ + P+ +G P+R + S +L Sbjct: 76 FVAREIAGDLV----YDDMIRADNFEQYRSSHLVKPVRRGLPLRAGDIDALRGRDFSDVL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179 G RA T++I +A +++P +HVDV V + S+ K +V+ N+ V+A Sbjct: 132 RPGTRALTVEIDTVNATALLLRPGNHVDVYWVGKVFHEDHTSDEKKVAQLVMPNVLVLAT 191 Query: 180 DHN---------IDSDERVLVGS-----------TATLELTPMQAKALVAAQSVAKLSLV 219 + D+ S T TLE+ + AQ + L L+ Sbjct: 192 GEDMRPRDAGEAAQQDQANANSSAMSRQAGMGYTTVTLEIPVDDVARVALAQKIGGLRLI 251 Query: 220 LRSIAD---LNPSSSEDSDVWDVQEEGK 244 LR+ D PS +++SDV+ G+ Sbjct: 252 LRNSEDKGADGPSLAQESDVFIDPARGR 279 >gi|51468905|emb|CAE47778.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 314 Score = 123 bits (310), Expect = 2e-26, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 31/259 (11%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P + Sbjct: 24 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 83 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG + L+ G + G+S + KRA T Sbjct: 84 FIQPDAIT------IPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 137 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183 + + V +I+P D +D+ ++ V +++++ V+A ++ Sbjct: 138 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 197 Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 DS + L +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 198 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 257 Query: 230 SSEDSDVWDVQEEGKEIQI 248 S D + + Sbjct: 258 PRMPSSTSDSVLGKPMVSV 276 >gi|325111215|ref|YP_004272283.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] gi|324971483|gb|ADY62261.1| Flp pilus assembly protein CpaB [Planctomyces brasiliensis DSM 5305] Length = 349 Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 90/243 (37%), Gaps = 25/243 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 + + I++ + L+A I +E+ T V ++ D+ G + Sbjct: 4 LTPAFITLIMLIVIGGLIAVYIGKSFFYTEPAPPQEISTRL------VPMAGSDIPAGTL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + + + + N + + G I + PI L G Sbjct: 58 ITSDHIV-----RGRLREDKMTRETILND-EAIIGRYSLTDIKQAQPILTSDLYAPGER- 110 Query: 121 LSSLLPKGKRAATMDISISSAV-GGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNI 174 L G +A T+ + S++V G+I+P D+VDV + S R V I Sbjct: 111 PPLELEPGMQAVTVSLGDSTSVVDGLIEPGDYVDVHLTVSDDLSDSRYRGGFTMTVFKGI 170 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 RV+A++ +T T ELTP Q+ ++ AQ +++ NP D Sbjct: 171 RVLAMNRLTQPTNISRGANTVTFELTPSQSNIILEAQRHGTITVS------YNPDGPGDG 224 Query: 235 DVW 237 V Sbjct: 225 GVA 227 >gi|254487761|ref|ZP_05100966.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] gi|214044630|gb|EEB85268.1| Flp pilus assembly protein CpaB [Roseobacter sp. GAI101] Length = 198 Score = 122 bits (307), Expect = 4e-26, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 9/153 (5%) Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 E++G +V+V + I K+ G + GL+S L +G RA T+ + +SS V G ++P D Sbjct: 5 EVNGDVVQVVARSFEAILAAKVTAPGEDTGLTSRLARGTRAFTIKVDVSSGVSGFLRPGD 64 Query: 151 HVDVVMVRSLS-------ERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPM 202 VDV ++ ++ + +++IAID + + + T T+ + P Sbjct: 65 RVDVYWTGRITVGDSNLRNAGDVTKLIEAGVQLIAIDQSAGGEMNEANIAQTVTVAVKPS 124 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 Q AL AQS KLSL L D + + + D Sbjct: 125 QVAALAQAQSTGKLSLSLVGADDDTIAGAIEVD 157 >gi|226325180|ref|ZP_03800698.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] gi|225206528|gb|EEG88882.1| hypothetical protein COPCOM_02972 [Coprococcus comes ATCC 27758] Length = 497 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 59/233 (25%), Positives = 101/233 (43%), Gaps = 10/233 (4%) Query: 2 KLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 K++RL + V A++AG +A+ + I E + V+ + + G Sbjct: 272 KVSRLQKVTAGLAVIAVLAGGVAVV----SEIDANNRIAEAFSGTTEVVAATKTIHAGDE 327 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 ++ + L +V+ P V DG I ++ + G + I KG + + N Sbjct: 328 ISASDLAFVSVPNSTVADGAITKKDIDDSSKTPVGRVATQYIAKGSQLTNASTAGKDNPE 387 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L++ + G A T+ + S +GGM++ ND V V+ S TV+ ++R+ A+ Sbjct: 388 SLAAAIGDGMEAVTISVDAQSGMGGMLRVNDRVKVIQPNDGSLGGDGFTVIADSVRIAAL 447 Query: 180 DHN-IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 D N ST TLE+TP QA + ++ L+L L S AD S Sbjct: 448 DGNFSSGSGSSDGYSTVTLEVTPEQAGKI---RTAGGLTLTLPSSADTTESGE 497 >gi|42521753|ref|NP_967133.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] gi|39574283|emb|CAE77787.1| putative flp pilus assembly protein CpaB [Bdellovibrio bacteriovorus HD100] Length = 301 Score = 122 bits (306), Expect = 5e-26, Method: Composition-based stats. Identities = 50/259 (19%), Positives = 103/259 (39%), Gaps = 31/259 (11%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A + ++E P + Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTIYDTMVETKELPAD 70 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG + L+ G + G+S + KRA T Sbjct: 71 FIQPDAIT------IPDEIIGNVAAVPIRKGQMVVKNNLLTPGPDTGISLQVAPSKRAVT 124 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183 + + V +I+P D +D+ ++ V +++++ V+A ++ Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184 Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 DS + L +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244 Query: 230 SSEDSDVWDVQEEGKEIQI 248 S D + + Sbjct: 245 PRMPSSTSDSVLGKPMVSV 263 >gi|281356955|ref|ZP_06243445.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] gi|281316513|gb|EFB00537.1| Flp pilus assembly protein CpaB [Victivallis vadensis ATCC BAA-548] Length = 264 Score = 121 bits (305), Expect = 8e-26, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 104/258 (40%), Gaps = 21/258 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + VF L+A ++ S ++ E+ ++ + ++ D A Sbjct: 1 MRQK--FLLLGAVVFGLLAFVL-----SYQQLEAEKRRIIGDSETVVLIKLAVDKAPNEE 53 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + P L V +P + + + + + G + + G ++ L Sbjct: 54 LQPGDL--VRYPVRRSREMQSMSREIPWSEVSRVIGRQLETTMTAGQVLQSTDLKPMTQR 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------RSLSERKPTVTVVLS 172 G + ++ G RA + + S+V +I+PND VDV+ R S +L Sbjct: 112 QGFNGVIRPGMRAVAIPVDPVSSVNNLIQPNDDVDVIGTFRFPDVRGDSSLDTVTLTILQ 171 Query: 173 NIRVIAIDHNIDSDE----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +++V+A+ + S T TL L P + + ++ A KL+L LR+ D+ Sbjct: 172 DVKVLAVGNRWGSASLDPAGARSYGTVTLLLYPEEVEMIIFASQKGKLNLSLRNFEDVKI 231 Query: 229 SSSEDSDVWDVQEEGKEI 246 S + + ++ KEI Sbjct: 232 SRETEKRSVNFKQLEKEI 249 >gi|76663414|emb|CAE47790.1| pilus assembling protein [Bdellovibrio bacteriovorus] Length = 302 Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats. Identities = 52/250 (20%), Positives = 101/250 (40%), Gaps = 31/250 (12%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 ++ AG+ A L+ + + + + V+++K D+A V ++E P + Sbjct: 11 LSIAAGVFATFLLYSYSQEKKAEYDKRFGSTKRVVVAKEDIAEMQTVYDTMVETKELPAD 70 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NGGLSSLLPKGKRAAT 133 + I E+ G + VPI KG I L+ G + G+S + KRA T Sbjct: 71 FIQPDAIT------VPDEIIGNVAAVPIRKGQMIVKNNLLTPGPDTGISLQVAPSKRAVT 124 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLS---ERKPTVTVVLSNIRVIAIDHNI------- 183 + + V +I+P D +D+ ++ V +++++ V+A ++ Sbjct: 125 IPVDEVRGVAKLIRPGDRIDIYAAVDSGKGVNQRREVFTMMNDVVVLATGVSVVNNIPRM 184 Query: 184 ---DSDERVLV---------GSTATLELTPMQAKAL--VAAQSVAKLSLVLRSIADLNPS 229 DS + L +T T+E TP +A+ L + + + L + LR+ +D Sbjct: 185 FELDSTGKNLTQIALTGDTKYTTITVEATPKEAQDLFYILSTAPGNLFMALRNPSDRTIP 244 Query: 230 SSEDSDVWDV 239 S D Sbjct: 245 PRMPSSTSDS 254 >gi|319795563|ref|YP_004157203.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315598026|gb|ADU39092.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 319 Score = 120 bits (302), Expect = 2e-25, Method: Composition-based stats. Identities = 44/259 (16%), Positives = 99/259 (38%), Gaps = 25/259 (9%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 L + + + ++ +V++++ + G V P ++ + P E + + + Sbjct: 36 YYLRASEREIAASLEKDADSQRRDVVVARQPIGEGSQVLPGMVAKRSVPNEYLHNDALT- 94 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 P + + G + VP+ G P+ + + +G RA T+ + S++ Sbjct: 95 ---PESFAQFAGRQLTVPVAAGKPLLASFFAAPRKVF-AQEIEQGVRAVTIPVDEISSIS 150 Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDH---------------NIDSD 186 GM++ D +D + V S V+ L ++ V A + D+D Sbjct: 151 GMLRAGDRIDFMYVVEKSAANDPSVVIPLLQDVEVRATGQITSEQFAAMRKRADVSADTD 210 Query: 187 ERVL-VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS--EDSDVWDVQEEG 243 +T T+ + P A+ L+ AQ + K+ LR+ D ++ + D+ + Sbjct: 211 PYARQRYATVTVAVQPQDAQKLILAQRLGKIIATLRNPEDRATMTTGVDAVDLDAIVSGF 270 Query: 244 KEIQIIKAGVIVNKDGEGI 262 + + + G G+ Sbjct: 271 RPQRAVPVAASHAAGGSGV 289 >gi|149175454|ref|ZP_01854075.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] gi|148845722|gb|EDL60064.1| hypothetical protein PM8797T_18359 [Planctomyces maris DSM 8797] Length = 367 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 17/225 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + +F + +IA + EE P N+ ++ +L G + Sbjct: 1 MKSLTPAKVTL-LMFGVFGVLIAAYIGKRLLAGKEEA---PPVATRNIPMAISELEPGTL 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 VT L +N+ + + + + G +V+ I PI +L G Sbjct: 57 VTDEHLGLGPIAIKNLKPEMMT------SNRVIVGRIVKERIPAATPISTGQLYPAGE-T 109 Query: 121 LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKP-----TVTVVLSNI 174 + G RA ++ + S V G+IKP ++VDV M + + + + Sbjct: 110 PPIQVEPGMRAISVSLESSVDLVDGLIKPGEYVDVHMTPTGMNNDKRLNGGMTLTLFNGV 169 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 RVIAI+ + + G+ TLELTP QA ++ A+ ++++ Sbjct: 170 RVIAINRSYTQNSSSRRGTNVTLELTPEQANIMILARDRGEITMS 214 >gi|78486069|ref|YP_391994.1| Flp pilus assembly CpaB [Thiomicrospira crunogena XCL-2] gi|78364355|gb|ABB42320.1| Flp (type IV) pilus assembly protein CpaB homolog [Thiomicrospira crunogena XCL-2] Length = 296 Score = 120 bits (301), Expect = 2e-25, Method: Composition-based stats. Identities = 55/266 (20%), Positives = 110/266 (41%), Gaps = 36/266 (13%) Query: 1 MKLTRLMGIV--VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------VLISK 52 MKL +V ++ + A++A ++ V + E + + ++++ Sbjct: 1 MKLKTSDWVVYGIAALSAILAIVLVYGYVQNRVAEAEANASTKTITVVEKPELHSIVVAS 60 Query: 53 GDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D+ G + + ++ + P E V G I + Q G + I G+ I + Sbjct: 61 RDIYRGEKIEADDVKVLNVPMEGLVVKGVIINP------QNAVGHVAHQKIYAGEWILAK 114 Query: 112 KLVDRGNG---GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TV 167 KL + +LL K +RA + I + + G+I P DHVDV+ V ++ K Sbjct: 115 KLKLESQSRFQSVEALLEKTRRAIRLPIEPDTGLLGIISPGDHVDVISVFESADSKRMVS 174 Query: 168 TVVLSNIRVIAID----------------HNIDSDERVLVGST-ATLELTPMQAKALVAA 210 +L NI V++I N+ ++++ + L++ QA+ L A Sbjct: 175 RTILQNITVLSIGIENQMRASTADSEEDNQNLFANKQASNKKSMVALDVDTTQAEKLALA 234 Query: 211 QSVAKLSLVLRSIADLNPSSSEDSDV 236 +V + L+LR+ AD ++ ++ Sbjct: 235 MNVGAIHLLLRNSADTELVDTKGVNL 260 >gi|154250525|ref|YP_001411349.1| SAF domain-containing protein [Parvibaculum lavamentivorans DS-1] gi|154154475|gb|ABS61692.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 317 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 41/228 (17%), Positives = 83/228 (36%), Gaps = 22/228 (9%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + VL++ D+ G ++ L E G D G + Sbjct: 70 AAENAVTVLVAARDVVRGQRISEADLGLRRM-EGPAPSGSFADAQSA------IGRVATD 122 Query: 101 PILKGDPIRLEKLV-DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-- 157 I I + L + G+++L+P+G+RA + I+ VGG ++ D VDV Sbjct: 123 DIRSSQIIFQQALSSEPAAAGIAALVPEGQRAFAIRIAEEDIVGGFLQAGDRVDVFATFP 182 Query: 158 ----------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--GSTATLELTPMQAK 205 + ++L +++V+A+ + + T T+ P Sbjct: 183 GAVYGQQGGLGQREGDQSKSALLLQDMQVLAVGPALSHQAGQVNAGARTVTVAAPPNALA 242 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGV 253 L A + ++L +R+ D + E + D++ G + ++A Sbjct: 243 RLALAGRLGHITLAIRNPGDREVAPGELVALDDLRPAGAAVAPVEAKS 290 >gi|91775996|ref|YP_545752.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] gi|91709983|gb|ABE49911.1| Flp pilus assembly CpaB [Methylobacillus flagellatus KT] Length = 299 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 57/282 (20%), Positives = 107/282 (37%), Gaps = 42/282 (14%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + + + + A ++ + H + PA +++++ D+ G V+ P L Sbjct: 8 ITAILLFIGAVLVGWYGIRAGHQPEIQAPAPLPAVLYPLVVARQDIPAGHVLLPEDLALE 67 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + + +A +L G +V I K PI RG + LL G+ Sbjct: 68 --------ESESQNPLAYSATTDLVGRMVESSIEKNAPILSSHFAQRGPA--AQLLKHGE 117 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVI----AIDHN 182 R + + VGG I+P DHVDV++ + S + +L ++RVI A+ N Sbjct: 118 RGVAIKVDEVVGVGGFIQPGDHVDVLVYINSSNGMTTDSSAQSILRDVRVISYGDALQQN 177 Query: 183 ID------------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 + S + L G +A + + L+ A S L L LR + Sbjct: 178 VSSSNVSPGPASMLADNGSTSKPQALSGHSAVIAVKEEDVSRLMLAASGGTLRLSLRGAS 237 Query: 225 -DLNPSSSEDSDVWDVQEEGKEI------QIIKAGVIVNKDG 259 D+ SS+ + ++ + + +++KA G Sbjct: 238 PDVAKKSSDLVRLSEITGSQQPVKAPSLPKVVKAAPTKKNAG 279 >gi|269926136|ref|YP_003322759.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] gi|269789796|gb|ACZ41937.1| Flp pilus assembly protein CpaB [Thermobaculum terrenum ATCC BAA-798] Length = 258 Score = 119 bits (300), Expect = 3e-25, Method: Composition-based stats. Identities = 56/254 (22%), Positives = 99/254 (38%), Gaps = 28/254 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ ++V A AG+ + +V + K + V+++ D+A G + Sbjct: 3 KRIGILLMIVGLALAAFAGLTVI------NVTRAAREAKPVIKQVQVVVAAQDIAQGSPI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG- 120 T ++LE FP + + +++ + I+KG I L D G Sbjct: 57 TASMLETKPFPADFAPSEAV------SSINDAVNRYSATNIVKGQIITRPLLSDTKQVGK 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV------------RSLSERKPTVT 168 L+ +PKGK A + S + G I+P D VDV++ ++ E + T Sbjct: 111 LALSIPKGKVAFALPASDLLSGNGQIQPGDRVDVLVTFFVKMTSIGPDGQTSDEERATTQ 170 Query: 169 VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQ--SVAKLSLVLRSIAD 225 L ++ V+ + SD L + P QA L A+ A + L LR +D Sbjct: 171 TTLQDLEVLDVLGTGAGSDGGNAKSPAVVLLVDPQQAVTLKLAKDSDKAVIDLALRGSSD 230 Query: 226 LNPSSSEDSDVWDV 239 + D + D Sbjct: 231 DHKQHETDGETEDS 244 >gi|186473163|ref|YP_001860505.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] gi|184195495|gb|ACC73459.1| Flp pilus assembly protein CpaB [Burkholderia phymatum STM815] Length = 339 Score = 119 bits (299), Expect = 3e-25, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 96/225 (42%), Gaps = 16/225 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 EV + + I V++ + D+ G ++ + + V DD+ + +A Sbjct: 44 RAEVAGKLALRGIEVVVPRRDVPAGTPLSSDAFVSREIAADLV----YDDMVRVDAFDAF 99 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 + ++ G P+R S +LP G+RA T +I ++ M++P + VD Sbjct: 100 RKAKLVRAVMHGRPLRTSDFDAPRGRDFSDMLPAGQRALTFEIDAVNSTASMLRPGNRVD 159 Query: 154 VVMVRSL----SERKPTVTVVLSNIRVIAIDHNI------DSDERVLVGS--TATLELTP 201 + V + + + V ++L + V+A ++ D DE T T+++ Sbjct: 160 MYWVGTQAYASAGERKAVRLLLPGVLVLATGRSVNARDAGDVDEPASASRYDTVTMQVPA 219 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246 A +V AQ + L L+LR+ AD + ++ ++ + G ++ Sbjct: 220 ADAPRIVLAQKMGTLRLILRNAADDDDIAASPVELTEGDVFGAQL 264 >gi|319791193|ref|YP_004152833.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315593656|gb|ADU34722.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 319 Score = 118 bits (297), Expect = 6e-25, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 90/235 (38%), Gaps = 24/235 (10%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 L + + + ++ +V+++ L G V P ++ + P E V + I Sbjct: 36 YYLRASEREIAASLEKDADSQRRDVVVANRALGDGTTVLPTMVAKRSVPNEYVHNDAIT- 94 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 P + G + VP+ G P+ + + +G RA T+ + S++ Sbjct: 95 ---PETFSQFAGRQLSVPVAAGKPLLASFFSAPRKVF-AQEIEQGVRAITIPVDEISSIS 150 Query: 144 GMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIAIDH---------------NIDSD 186 GM++ D +D + + S VV L ++ V A + D+D Sbjct: 151 GMLRAGDRIDFMYMVEKSAANDPSVVVPLLQDVEVRATGQITSEQFAAMRKRSDVSADTD 210 Query: 187 ERV-LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 ST T+ + P A+ L+ AQ + K+ LR+ D + + D D+ Sbjct: 211 PYAQQRYSTVTVAIQPQDAQKLILAQRLGKIIATLRNPEDRA-TMTSGVDAVDLD 264 >gi|317403406|gb|EFV83919.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 279 Score = 118 bits (295), Expect = 1e-24, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 94/227 (41%), Gaps = 17/227 (7%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + + + E+ ++ L++ DL G +TP L P + I +P Sbjct: 36 RQRVDTLAGEHREAMVSRLVAARDLPAGTELTPAHLAIRDIPAQWAPAASI----EPRDG 91 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGG---LSSLLPKGKRAATMDISISSAVGGMIK 147 + G + + + +GDP+ L + L++ L G+RA + ++ V +++ Sbjct: 92 DSVLGTRLGLALAQGDPVLSGCLARADSASPPALAARLDPGQRALQVPVADLGTVADLLR 151 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 D VD+ + R+ T +L +RV+A+ D+ TL TP QA Sbjct: 152 VGDLVDIYVSFPHRGRE-VTTPLLQGVRVLAV---PDAGGGTGPAQ-VTLAATPNQAMRY 206 Query: 208 VAAQSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQII 249 +AA+ L+ ++R+ AD +P S + E +E ++ Sbjct: 207 LAARRAGTLTGLVRNRADTARIPEDPPRDLASLIGLAPEAPREPAVV 253 >gi|167824271|ref|ZP_02455742.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 9] Length = 192 Score = 116 bits (290), Expect = 4e-24, Method: Composition-based stats. Identities = 40/165 (24%), Positives = 72/165 (43%), Gaps = 17/165 (10%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 28 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87 Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192 +P D+VDV++ + L +R + + +RV+A+ D+ + Sbjct: 88 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDSD 235 T T E++ A+ + + LSL LRS A D + ++ Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPAE 192 >gi|311105391|ref|YP_003978244.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] gi|310760080|gb|ADP15529.1| Flp pilus assembly protein CpaB 1 [Achromobacter xylosoxidans A8] Length = 284 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 52/223 (23%), Positives = 93/223 (41%), Gaps = 10/223 (4%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVI-TENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 AL+AG+++ V H Q + + E ++ L++ DL G + L P Sbjct: 19 AIALIAGLVSAWAVREHVQQRVQALEAEARTPMVSRLVAAYDLPAGTQLEELHLAVREIP 78 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNGGLSSLLPKGKRA 131 E ID P + L G + + G+P+ L L+S L G+RA Sbjct: 79 EPWASRASID----PLDLSGLLGATLLADVANGEPLLRGHLTFTAPVPALASRLRSGQRA 134 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV 191 T+ + + +++ D +D+ + + +++ TV +L +RV+ + D + + Sbjct: 135 LTVAATDLGGLAEVLRVGDAIDIYVSFAHRQQELTV-PLLQGMRVLMVGGEADGENK--- 190 Query: 192 GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 G TL TP +A VAA+ L+ +LR D S Sbjct: 191 GGNITLAATPDEAMRFVAARQSGVLTAMLRHRDDAAVVSGAAQ 233 >gi|167911034|ref|ZP_02498125.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 112] Length = 210 Score = 115 bits (288), Expect = 6e-24, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 28 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 87 Query: 147 KPNDHVDVVMVRSLSERKPT---------VTVVLSNIRVIAIDHNI-----DSDERVLVG 192 +P D+VDV++ + L+ T + + +RV+A+ D+ + Sbjct: 88 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 147 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 T T E++ A+ + + LSL LRS A Sbjct: 148 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 179 >gi|257791505|ref|YP_003182111.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|257475402|gb|ACV55722.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] Length = 243 Score = 115 bits (288), Expect = 7e-24, Method: Composition-based stats. Identities = 56/229 (24%), Positives = 96/229 (41%), Gaps = 20/229 (8%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + +V + A+ + ++ +VQ+E +I+ ++ G ++ Sbjct: 33 SARKLSLVTAASVAIAVIAVVYAFLTSSNVQSEIATLRENTSST--VITTTAISQGTTIS 90 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GL 121 P++L+ V P + I D Q+L G + I + L N L Sbjct: 91 PDMLKVVDIPASFLNSEAIADT------QDLVGKIALYNIAANSQVTSGMLSAMDNAATL 144 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 +S L G A ++ + S + G+IK ND+VD++ V++ N+RV A+D Sbjct: 145 ASSLQAGNVAISIAVDSESGLSGLIKQNDYVDIL---------GNGEVIVQNVRVAALDS 195 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 N+ V +T TLE+ P QA A+ AQS L VLR + Sbjct: 196 NLS--GSVSQYATVTLEVAPTQATAIQEAQSENPLRFVLRPAVERTAPG 242 >gi|167845817|ref|ZP_02471325.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei B7210] Length = 181 Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats. Identities = 40/164 (24%), Positives = 71/164 (43%), Gaps = 17/164 (10%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 18 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 77 Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192 +P D+VDV++ + L +R + + +RV+A+ D+ + Sbjct: 78 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 137 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA--DLNPSSSEDS 234 T T E++ A+ + + LSL LRS A D + + Sbjct: 138 RTVTFEVSSRDAQVITVGAHLGALSLALRSFATSDRGAVGTAPA 181 >gi|161524906|ref|YP_001579918.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC 17616] gi|189350344|ref|YP_001945972.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] gi|160342335|gb|ABX15421.1| Flp pilus assembly protein CpaB [Burkholderia multivorans ATCC 17616] gi|189334366|dbj|BAG43436.1| pilus assembly protein [Burkholderia multivorans ATCC 17616] Length = 313 Score = 114 bits (287), Expect = 8e-24, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 98/246 (39%), Gaps = 35/246 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+ + I ++ + + A ++ +PH + + NP ++V+++ L VG + Sbjct: 7 KIIAGLLIAIAVLLGIYAWMLGR--STPHPAPVQPTVAANP---VSVVVATRTLPVGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P +V G D L G + I P+ + LV GL Sbjct: 62 AADALKVQ--PIASVPAGAFADPAV------LVGRVPARDIPASAPVVSDALVS----GL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLSN 173 + + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSK 169 Query: 174 IRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +RV++ S+ + A L + Q AL +S +L+L LR+ Sbjct: 170 VRVLSFGDATPDRDSGNNTNGSNGQPSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNP 229 Query: 224 ADLNPS 229 D + Sbjct: 230 RDDELA 235 >gi|239817411|ref|YP_002946321.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] gi|239803988|gb|ACS21055.1| Flp pilus assembly protein CpaB [Variovorax paradoxus S110] Length = 331 Score = 114 bits (286), Expect = 1e-23, Method: Composition-based stats. Identities = 51/285 (17%), Positives = 93/285 (32%), Gaps = 38/285 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE-------EVITENPAKFINVLISKG 53 M + + + A+ G A L +T E A V+++ Sbjct: 1 MINLTKIVAAILVLLAIALGGYAWMLGRQAPAKTAVTATAPSEQPQSQQAPTYPVVVAAK 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G + + L G +V G + + + +G P+ +L Sbjct: 61 PLPAGQAIPADALRVERLTVN--PAGAFQEVATA------TGRVPVIDLSEGSPLMDNQL 112 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170 V GL+ + +G+RA + VG I+P D VDV + + ++ Sbjct: 113 VS----GLALRVGEGERAVAIKADEIMGVGNKIQPGDFVDVFITLKSDGKDVDRSQARLL 168 Query: 171 LSNIRVIA-------------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 LS RV+A D +R TA L ++ L + +L Sbjct: 169 LSRKRVLAFGSASVDGLPSKTTDKQQQQAQRTEAPRTAVLAVSVDDVNRLTIGDATGRLM 228 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEGI 262 L LR+ D+ + ++ + ++ G EG+ Sbjct: 229 LALRNPNDVAEPDPK---LFADLPTALQPASVRPGEPRRASLEGL 270 >gi|296158793|ref|ZP_06841622.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] gi|295890998|gb|EFG70787.1| Flp pilus assembly protein CpaB [Burkholderia sp. Ch1-1] Length = 316 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 28/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V ALV G+ A L +T V+++ LA G Sbjct: 1 MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPATHASFPVVVATRALAPGKP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L + P +G + Q L G + I P+ +L + G Sbjct: 58 ITVDDLRIQSLPIN--PNGAFTEPAQ------LAGRVPNAEIGADSPVLESQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171 L+ + G+RA + + +AVG ++P + VDV + +++ Sbjct: 106 LAERVEAGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165 Query: 172 SNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV+A + S + + TA L + L A+S +L LR+ D Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225 Query: 228 PSS 230 Sbjct: 226 VVD 228 >gi|187923644|ref|YP_001895286.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187714838|gb|ACD16062.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 316 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 86/228 (37%), Gaps = 24/228 (10%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +++GV VA ++ + S +T V+++ L G +T + + Sbjct: 7 ILAGVLIAVALVLGLFAWSLSRRPALVAVTPATQASFRVVVATHTLPAGKAITVDDVRVQ 66 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + P +G D Q L G + I P+ +L + GL+ + G+ Sbjct: 67 SLPIN--PNGAFTDPAQ------LAGRVPNAEIGAESPVLESQL----SSGLAERVEPGE 114 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRVIAIDH 181 RA + + +AV ++P + VDV + +++S +RV+A + Sbjct: 115 RALAVRVDEGNAVANRLRPGNFVDVFFTLKRDASIGNGGEIDRTQARLLMSKVRVLAFGN 174 Query: 182 NIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 S + + TA L + L A+S +L LR+ D Sbjct: 175 ATASGDSAGDPNGMVRTAVLAVPVADIDRLTLAESAGRLIFALRNPKD 222 >gi|76810330|ref|YP_333339.1| CpaB family Flp pilus assembly protein [Burkholderia pseudomallei 1710b] gi|76579783|gb|ABA49258.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 1710b] Length = 348 Score = 114 bits (285), Expect = 2e-23, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 61 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 120 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 121 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 168 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 169 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 228 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ++ D TA L + Q AL A++ +L L LRS D + + ++ + Sbjct: 229 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 287 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G Q V+ G G Sbjct: 288 RAPAGAGPSNQAATGLVLSELSGSG 312 >gi|323341956|ref|ZP_08082189.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414] gi|322464381|gb|EFY09574.1| flp pilus assembly CpaB [Erysipelothrix rhusiopathiae ATCC 19414] Length = 269 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 106/265 (40%), Gaps = 58/265 (21%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +L+ +VV+ AG+ + L++P +E+ ++ V+++ L Sbjct: 1 MDKNKLISVVVA------AGVFLLALMNPIQGLKKEIPKKD---LTQVVVALKPLTAQTR 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGN 118 +T +++E ++ +G D + + G + + GD EK+ V +G+ Sbjct: 52 ITQDMIEVKNVHKDAAPEGAFADA------ERVVGKVTTTKMSVGDMFTGEKVEVVGQGS 105 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166 GLS++L RA T+ + + G+I+ + +D++ V + T Sbjct: 106 SGLSTVLTDNMRAYTVKLEGQYGMQGLIRVGNKIDIITVLDSDLPEDTLQKYDYLKKNYP 165 Query: 167 --------------------------VTVVLSNIRVIAIDHNIDSDERVL---VGSTATL 197 ++L N V+AID + D++ + + +T TL Sbjct: 166 QLYAGSVETAVDGKERIPVLGLKEKKAVLLLQNKEVLAIDQDTLPDDKKVADKMYTTVTL 225 Query: 198 ELTPMQAKALVAAQSVAKLSLVLRS 222 ++ A L ++SV +LRS Sbjct: 226 AVSAEDALKLAVSESVGTNRAILRS 250 >gi|39936739|ref|NP_949015.1| hypothetical protein RPA3677 [Rhodopseudomonas palustris CGA009] gi|192292565|ref|YP_001993170.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] gi|39650595|emb|CAE29118.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] gi|192286314|gb|ACF02695.1| Flp pilus assembly protein CpaB [Rhodopseudomonas palustris TIE-1] Length = 193 Score = 113 bits (284), Expect = 2e-23, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 6/145 (4%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R+ V A+ AG +A L S Q A+ + VL++K D+ +G Sbjct: 7 MNPARI----VVLTIAVGAGGVAAYLASSTGPQ-PGAPAAPVAQTVEVLVAKNDIPLGQA 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-DRGNG 119 VTP L+W +P FI P A ++ G + R P + G+PIR +KLV G+ Sbjct: 62 VTPGDLQWQTWPAATASSNFIRRDLHPGATTDIGGSITRAPFIAGEPIRRQKLVQADGSS 121 Query: 120 GLSSLLPKGKRAATMDISISSAVGG 144 + + +P G RA + + ++ G Sbjct: 122 SVPAFVPTGMRAISTETALEPGATG 146 >gi|167815899|ref|ZP_02447579.1| putative fimbriae-assembly related protein [Burkholderia pseudomallei 91] Length = 166 Score = 113 bits (283), Expect = 2e-23, Method: Composition-based stats. Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 15/152 (9%) Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMI 146 +L G L+R P+ G P+ ++ G L++ L G RA ++ I S G+I Sbjct: 4 EPKTDLKGDLLRHPVRAGAPLGPADVISPSAPGFLAAALKPGMRAISVAIDDVSGNAGLI 63 Query: 147 KPNDHVDVVMVRSL---------SERKPTVTVVLSNIRVIAIDHNI-----DSDERVLVG 192 +P D+VDV++ + L +R + + +RV+A+ D+ + Sbjct: 64 EPGDYVDVLLTQQLAAPGGTPADPQRAVESETIAARLRVLAVGSAFQRPKDDAAQPNTRA 123 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 T T E++ A+ + + LSL LRS A Sbjct: 124 RTVTFEVSSRDAQVITVGAHLGALSLALRSFA 155 >gi|167620225|ref|ZP_02388856.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis Bt4] Length = 266 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I+ P+ +L+ GL+ + G+R Sbjct: 72 TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D D TA L + Q AL A++ +L L LRS D + ++ Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 233 >gi|296122068|ref|YP_003629846.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] gi|296014408|gb|ADG67647.1| Flp pilus assembly protein CpaB [Planctomyces limnophilus DSM 3776] Length = 334 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 47/222 (21%), Positives = 90/222 (40%), Gaps = 14/222 (6%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + RL +++ V V G++ + + + EE + NV ++ D+ G ++T Sbjct: 1 MRRLTPALLTLVMFGVVGLLVVAYIGKSLLAREE--KKPVIATRNVPMAISDIEPGTLIT 58 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + + A + + G + R I +PIR +L G Sbjct: 59 EGHIGLGPVQNSQLKPDMLL------ANRVIVGRVARTKIRAAEPIRAGQLYQPGEL-PD 111 Query: 123 SLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLSNIRVI 177 + G RA ++ ++ V GMIKP ++VDV+ + + ++VI Sbjct: 112 LRVADGMRAVSISVAEMVGIVDGMIKPGNYVDVLFTVESQSNADLQGGVTMRLFEGVKVI 171 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 AI+ + + TLELT QA + A++ L+L+ Sbjct: 172 AINRSFTQSRVERGVNRVTLELTQAQANIITLAEAKGALTLI 213 >gi|91783010|ref|YP_558216.1| putative signal peptide protein, CpaB like [Burkholderia xenovorans LB400] gi|91686964|gb|ABE30164.1| Putative signal peptide protein, CpaB like protein [Burkholderia xenovorans LB400] Length = 316 Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats. Identities = 50/243 (20%), Positives = 87/243 (35%), Gaps = 28/243 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + V ALV G+ A L +T V+++ LA G Sbjct: 1 MPNLTRIFAGVLIAVALVLGLFAWTLSRR---PAPVAVTPAVHASFPVVVATRALAPGKP 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L + P +G + Q L G + I P+ +L + G Sbjct: 58 ITVDDLRIQSLPIN--PNGAFTEPAQ------LAGRVPNAEIGADSPVLESQL----SSG 105 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVL 171 L+ + G+RA + + +AVG ++P + VDV + +++ Sbjct: 106 LAERVEVGERALAVRVDEGNAVGNRLRPGNFVDVFFTLKRDGGSMGNGGEIDRTQARLLM 165 Query: 172 SNIRVIAIDHNIDSDERV----LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 S +RV+A + S + + TA L + L A+S +L LR+ D Sbjct: 166 SKVRVLAFGNATASGDSAGDPNGMVRTAVLAVPVADVDRLTLAESAGRLIFALRNPKDTE 225 Query: 228 PSS 230 Sbjct: 226 VVD 228 >gi|170696787|ref|ZP_02887896.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] gi|170138303|gb|EDT06522.1| Flp pilus assembly protein CpaB [Burkholderia graminis C4D1M] Length = 318 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 28/245 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KLTR++ + V AL+ G+ A+ L+ + + V+++ L G Sbjct: 7 LKLTRIVAGALIAV-ALLLGVFAVMLLRRPAPAPVASVKQT---VFPVVVATRVLPAGKP 62 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L P +G D + G + I P+ E+L + G Sbjct: 63 IGADALRVQPLPIN--PNGAFADPSL------VAGRVPAADIGADSPVLEEQL----SSG 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ + G+RA + + S+AVG ++P + VDV + +++S Sbjct: 111 LAERIEPGERAVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIERTQARLLMS 170 Query: 173 NIRVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 +RV+A + S + + TA L + L A+S +L LR+ D Sbjct: 171 KVRVLAFGNATAAGDTSGDPNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDAEI 230 Query: 229 SSSED 233 + Sbjct: 231 IDAAA 235 >gi|126439530|ref|YP_001058806.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] gi|126219023|gb|ABN82529.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 668] Length = 299 Score = 112 bits (281), Expect = 4e-23, Method: Composition-based stats. Identities = 52/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 APTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 +D D TA L + Q AL A++ +L L LRS D + + ++ + Sbjct: 180 ATVDRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G Q V+ G G Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263 >gi|87308905|ref|ZP_01091043.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] gi|87288248|gb|EAQ80144.1| pilus assembly protein CpaB [Blastopirellula marina DSM 3645] Length = 299 Score = 112 bits (281), Expect = 5e-23, Method: Composition-based stats. Identities = 52/266 (19%), Positives = 109/266 (40%), Gaps = 22/266 (8%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMVVTPNILEW 68 + GV A++ G+++ +V + ++ + E A ++ + +L G +T + Sbjct: 1 MLGVVAVMFGLLSAYVVRKNMMKETPPVVETTAPPKTFVVPKAAVNLPAGRTLTLGDVVI 60 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPK 127 + E+ + + + + NA Q + G +R + + + G G G+ L Sbjct: 61 YQYTEKQLEEQPLPTGYMVNATQ-IIGRTLRQELTEKSVFTPDMFYPEGTGPGIVQNLGA 119 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVM---VRSLSERKPTVTVVLSNIRVIAIDHNI- 183 G+RA T+ I AV G +P VDV+ +E T +L +++V+A D + Sbjct: 120 GQRAFTVRIEYDEAVEGFARPGTKVDVLFRAEADPENELAETTVTLLQDVKVLAFDSSPS 179 Query: 184 ---------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL----NPSS 230 R+ +T TL + P +A L A +L L + N + Sbjct: 180 ALHPIVNEQSQRLRMREYATVTLAVLPHEATKLQVADDHGTFALALVPLDGEVVSYNGAP 239 Query: 231 SEDSDVWDVQEEGKE-IQIIKAGVIV 255 +++ D + ++ +++ + G I Sbjct: 240 RTLAELLDRRPPLRQMMRVYRGGQIS 265 >gi|187251613|ref|YP_001876095.1| pilus assembly protein [Elusimicrobium minutum Pei191] gi|186971773|gb|ACC98758.1| Pilus assembly protein [Elusimicrobium minutum Pei191] Length = 253 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 50/255 (19%), Positives = 104/255 (40%), Gaps = 28/255 (10%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 G+ + V A++A ++ ++ + + EE +K V+I+ DL V+T L Sbjct: 4 GVFLPLVIAILAAVVYFIILFSNQSKFEE-----NSKLERVVIAIRDLPERKVITKGDLG 58 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-RGNGGLSSLLP 126 + P + + + + + ++ R+ I KG+ + L GLS+ + Sbjct: 59 VIEMPNKFLQKDAFTVTRDSDITKLENNLVTRIAIPKGNQVSKAALTSLSPEAGLSARVS 118 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-----SERKPTVTVVLSNIRVIAIDH 181 R + + S+V +IKP+D VDV++ +++ +L I+V+ + + Sbjct: 119 PLWRGF-VLTDVPSSVANLIKPDDWVDVLLTFDAYMKNTGQKEKITATILQRIKVLGVGN 177 Query: 182 NIDSD----------ERVLVG------STATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 ++ ER S +L L P A+ L A+ ++LV+R D Sbjct: 178 DLGQGMDANQLRATREREASASAFNDSSAISLALHPRDAQYLALAKEEGIITLVVRRRED 237 Query: 226 LNPSSSEDSDVWDVQ 240 S + + ++ Sbjct: 238 QGVHSIAIASLTEMF 252 >gi|53719510|ref|YP_108496.1| putative membrane fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|126451660|ref|YP_001066057.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|134282337|ref|ZP_01769042.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|167902900|ref|ZP_02490105.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei NCTC 13177] gi|167911137|ref|ZP_02498228.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 112] gi|167919160|ref|ZP_02506251.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei BCC215] gi|217423802|ref|ZP_03455303.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|226199689|ref|ZP_03795242.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237812066|ref|YP_002896517.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242315361|ref|ZP_04814377.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254179958|ref|ZP_04886557.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|254188632|ref|ZP_04895143.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|254197581|ref|ZP_04904003.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|254259533|ref|ZP_04950587.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] gi|52209924|emb|CAH35896.1| putative membrane fimbriae assembly protein [Burkholderia pseudomallei K96243] gi|126225302|gb|ABN88842.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106a] gi|134246375|gb|EBA46464.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 305] gi|157936311|gb|EDO91981.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pasteur 52237] gi|169654322|gb|EDS87015.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei S13] gi|184210498|gb|EDU07541.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1655] gi|217393660|gb|EEC33681.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 576] gi|225928275|gb|EEH24309.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei Pakistan 9] gi|237503330|gb|ACQ95648.1| Flp pilus assembly protein CpaB [Burkholderia pseudomallei MSHR346] gi|242138600|gb|EES25002.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1106b] gi|254218222|gb|EET07606.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 1710a] Length = 299 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 96/265 (36%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ++ D TA L + Q AL A++ +L L LRS D + + ++ + Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G Q V+ G G Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263 >gi|172060494|ref|YP_001808146.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] gi|171993011|gb|ACB63930.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MC40-6] Length = 311 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 94/242 (38%), Gaps = 33/242 (13%) Query: 10 VVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 +++G+ +A ++ + ++ Q V A + V+++ L VG + + L+ Sbjct: 8 IIAGLLIAIAVLLGIYAWMLGRSASQPAPVQQVIAASPVPVVVATRALPVGQPIAADALK 67 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 P V G D L G + I P+ + LV GL+ + Sbjct: 68 VQ--PIAPVPTGAFADPAI------LVGRVPARDIPASAPVVSDSLVS----GLAEDVQP 115 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------VTVVLSNIRVIA 178 G+RA + + ++AVG ++P + VDV + P +++S +RV++ Sbjct: 116 GERAIAIRVDETNAVGNRLRPGNFVDVFVNLKREASGPMLDGEVSQTQARLLMSKVRVLS 175 Query: 179 IDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 ++ + A L + Q AL +S +L+L LR+ D Sbjct: 176 FGDATPERDSGSNTNGNNGQPSSARIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDEL 235 Query: 229 SS 230 ++ Sbjct: 236 AT 237 >gi|319795778|ref|YP_004157418.1| flp pilus assembly protein cpab [Variovorax paradoxus EPS] gi|315598241|gb|ADU39307.1| Flp pilus assembly protein CpaB [Variovorax paradoxus EPS] Length = 327 Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats. Identities = 48/252 (19%), Positives = 84/252 (33%), Gaps = 33/252 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK-------FINVLISKG 53 M + + + A+ G A L T N A V+++ Sbjct: 1 MINLTKIIAAILVLLAIALGGYAWMLSRQAPAPRPIATTPNTASAKTQQAVTYPVVVAAK 60 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L G ++ + L G D G + + + +G P+ +L Sbjct: 61 ALPAGQIIPADALRVERLTIN--PSGAFQDTAVA------TGRVPVLDLGEGTPLLEGQL 112 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVV 170 V GL+ + +G+RA + VG ++P D VDV ++ + ++ Sbjct: 113 VS----GLALKIAEGERAVAVKADEVMGVGNKVQPGDFVDVFILLKSDGKDVDRSQARLL 168 Query: 171 LSNIRVIAIDHNI-----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 LS RV+A + +R TA L + L A+S +L L Sbjct: 169 LSRKRVLAFGNASVDGLTSKTADKQQPQRAEPARTAVLAVPVDDINRLTLAESSGRLLLA 228 Query: 220 LRSIADLNPSSS 231 LR+ D+ Sbjct: 229 LRNPTDMQEPDP 240 >gi|33596968|ref|NP_884611.1| hypothetical protein BPP2375 [Bordetella parapertussis 12822] gi|33566419|emb|CAE37672.1| putative membrane protein [Bordetella parapertussis] Length = 313 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 37/260 (14%) Query: 21 IIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A L + + + + + V+++ +A G + +L+ +P Sbjct: 21 YAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAAELLKIERWP----- 75 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 + + + L G +VR I G+P+ L GL+ L G+RA T+ + Sbjct: 76 ---VQPANGYAESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVD 128 Query: 138 ISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHN------------- 182 S I P D VDV +V R + ++ S I+V+A Sbjct: 129 ELSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPS 188 Query: 183 -IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + A L + + L+ A +L LVLRS D++ + Sbjct: 189 VAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFP 242 Query: 242 EGKEIQIIKAGVIVNKDGEG 261 E + ++AG+ + +G Sbjct: 243 ERAPVLALRAGLTAEQQRDG 262 >gi|163857692|ref|YP_001631990.1| putative Flp pilus assembly protein [Bordetella petrii DSM 12804] gi|163261420|emb|CAP43722.1| putative Flp pilus assembly protein [Bordetella petrii] Length = 320 Score = 111 bits (279), Expect = 8e-23, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 81/228 (35%), Gaps = 33/228 (14%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++ D+ G + +L+ +P I H ++L G + R+ I Sbjct: 54 TYPVVLAAKDIQAGTRLDAGMLKVQQWP--------IPLAHGYAKPEDLAGQVARLDIAG 105 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-- 162 G+PI + L GL+ L G+RA + + G I P D VDV Sbjct: 106 GEPITNQSLAQ----GLAQQLRDGERAVAVPVDEIVGAGNRITPGDLVDVFFALEKDNEV 161 Query: 163 RKPTVTVVLSNIRVIAIDHN-------------IDSDERVLVGSTATLELTPMQAKALVA 209 + V ++ S +RV+A + +A L + + L+ Sbjct: 162 KGSQVRLLQSRVRVLAYGAQSIDGPPVASDKPVVQRGASPAPARSALLAVPVERVNELLL 221 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 A L L LR+ +D D+ + + +AG+ + Sbjct: 222 ASRSGHLQLALRAPSDEALPD------RDLFVPREAVISARAGLTAEQ 263 >gi|33593024|ref|NP_880668.1| hypothetical protein BP1995 [Bordetella pertussis Tohama I] gi|33563399|emb|CAE42275.1| putative membrane protein [Bordetella pertussis Tohama I] gi|332382436|gb|AEE67283.1| hypothetical protein BPTD_1965 [Bordetella pertussis CS] Length = 313 Score = 111 bits (278), Expect = 9e-23, Method: Composition-based stats. Identities = 50/260 (19%), Positives = 94/260 (36%), Gaps = 37/260 (14%) Query: 21 IIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A L + + + + + V+++ +A G + ++L+ +P Sbjct: 21 YAAFMLATRPAPPPPKPVAQRASAALPTYPVVVAGKPIAAGDRLAADLLKIERWP----- 75 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 + + + L G +VR I G+P+ L GL+ L G+RA T+ + Sbjct: 76 ---VQPANGYAESEALLGQMVRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVD 128 Query: 138 ISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHN------------- 182 S I P D VDV +V R + ++ S I+V+A Sbjct: 129 ELSGAQNRILPGDLVDVFVVMDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPS 188 Query: 183 -IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + A L + + L+ A +L LVLRS D++ + Sbjct: 189 VAQRGQPPAAPRNAMLAVPVERVNELLLAAKAGRLQLVLRSPEDIDVPD------LALFP 242 Query: 242 EGKEIQIIKAGVIVNKDGEG 261 E + ++AG+ + +G Sbjct: 243 ERAPVLALRAGLTAEQQRDG 262 >gi|53723521|ref|YP_102955.1| hypothetical protein BMA1291 [Burkholderia mallei ATCC 23344] gi|67641295|ref|ZP_00440076.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4] gi|121600825|ref|YP_993099.1| hypothetical protein BMASAVP1_A1779 [Burkholderia mallei SAVP1] gi|124385109|ref|YP_001026124.1| hypothetical protein BMA10229_A0116 [Burkholderia mallei NCTC 10229] gi|126449256|ref|YP_001080604.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|167002483|ref|ZP_02268273.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20] gi|254177688|ref|ZP_04884343.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC 10399] gi|254199897|ref|ZP_04906263.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH] gi|254206229|ref|ZP_04912581.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU] gi|254358354|ref|ZP_04974627.1| putative pilus assembly protein CpaB [Burkholderia mallei 2002721280] gi|52426944|gb|AAU47537.1| conserved hypothetical protein [Burkholderia mallei ATCC 23344] gi|121229635|gb|ABM52153.1| conserved hypothetical protein [Burkholderia mallei SAVP1] gi|126242126|gb|ABO05219.1| putative pilus assembly protein CpaB [Burkholderia mallei NCTC 10247] gi|147749493|gb|EDK56567.1| putative pilus assembly protein CpaB [Burkholderia mallei FMH] gi|147753672|gb|EDK60737.1| putative pilus assembly protein CpaB [Burkholderia mallei JHU] gi|148027481|gb|EDK85502.1| putative pilus assembly protein CpaB [Burkholderia mallei 2002721280] gi|160698727|gb|EDP88697.1| putative pilus assembly protein CpaB [Burkholderia mallei ATCC 10399] gi|238522204|gb|EEP85650.1| Flp pilus assembly protein CpaB [Burkholderia mallei GB8 horse 4] gi|243061823|gb|EES44009.1| putative pilus assembly protein CpaB [Burkholderia mallei PRL-20] Length = 299 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 50/265 (18%), Positives = 95/265 (35%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ++ D TA L + Q AL A++ +L LRS D + + ++ + Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVFALRSPRDEDIA-AQTVAI 238 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G Q V+ G G Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263 >gi|257139290|ref|ZP_05587552.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] Length = 303 Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I+ P+ +L+ GL+ + G+R Sbjct: 72 TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D D TA L + Q AL A++ +L L LRS D + ++ Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 233 >gi|33600810|ref|NP_888370.1| hypothetical protein BB1825 [Bordetella bronchiseptica RB50] gi|33568410|emb|CAE32322.1| putative membrane protein [Bordetella bronchiseptica RB50] Length = 313 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 87/240 (36%), Gaps = 34/240 (14%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 V+++ +A G + ++L+ +P + + + L G + Sbjct: 41 RASAALPTYPVVVAGKPIAAGDRLAADLLKIERWP--------VQPANGYAESEALLGQM 92 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 VR I G+P+ L GL+ L G+RA T+ + S I P D VDV +V Sbjct: 93 VRQDIPAGEPVTAPMLA----RGLARHLAPGERAVTIAVDELSGAQNRILPGDLVDVFVV 148 Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHN--------------IDSDERVLVGSTATLELTP 201 R + ++ S I+V+A + A L + Sbjct: 149 MDRGIEVPGTQTRLLQSRIKVLAYGQRSVDGPPQGEEKPSVAQRGQPPAAPRNAMLAVPV 208 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 + L+ A +L LVLRS D++ + E + ++AG+ + +G Sbjct: 209 ERVNELLLAAKAGRLQLVLRSPEDVDVPD------LALFPERAPVLALRAGLTAEQQRDG 262 >gi|221213140|ref|ZP_03586116.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1] gi|221167353|gb|EED99823.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD1] Length = 309 Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 30/245 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V I ++ + V A + ++I+ L G Sbjct: 1 MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L+ P V G D L G + I P+ + LV G Sbjct: 61 IAADALKIQ--PTSPVPAGAFADAST------LVGRVPARDIPASSPVVSDALVS----G 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168 Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV+A S+ + A L + Q AL ++ +L+L LR+ Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228 Query: 223 IADLN 227 D Sbjct: 229 PRDDE 233 >gi|221197780|ref|ZP_03570826.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M] gi|221204662|ref|ZP_03577679.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2] gi|221175519|gb|EEE07949.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2] gi|221181712|gb|EEE14113.1| Flp pilus assembly protein CpaB [Burkholderia multivorans CGD2M] Length = 309 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 47/245 (19%), Positives = 86/245 (35%), Gaps = 30/245 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V I ++ + V A + ++I+ L G Sbjct: 1 MTNNLTKIIAGLLIAIAVLLGIYAWMLGRSTPRPAPVQQTIAASPVPIVIATRTLPAGQP 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + L+ P V G D L G + I P+ + LV G Sbjct: 61 IAADALKIQ--PTSPVPAGAFADAST------LVGRVPARDIPASSPVVSDALVS----G 108 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------KPTVTVVLS 172 L+ + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 109 LAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREGNAMLDGEVSQTQARLLMS 168 Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV+A S+ + A L + Q AL ++ +L+L LR+ Sbjct: 169 KVRVLAFGDATPERDSGSNTNGSNAQPSNVRIAVLAVPTAQVDALTLGEASGRLTLALRN 228 Query: 223 IADLN 227 D Sbjct: 229 PRDDE 233 >gi|330816714|ref|YP_004360419.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] gi|327369107|gb|AEA60463.1| Flp pilus assembly CpaB [Burkholderia gladioli BSR3] Length = 305 Score = 110 bits (275), Expect = 2e-22, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 31/249 (12%) Query: 1 MKLTRLMGIVVSGV-FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M + V+ + AL+ GI A L PAK V+++ L G Sbjct: 1 MANNLTKILAVALIAIALLLGIFAWVLGRKPAPVVNNAQQATPAKLFPVVVAARPLKGGQ 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + L+ + +G D Q + G + + + + L + Sbjct: 61 PIPADGLKVQQ--AAALPEGAFADPVQ------IVGRVPIADVPEQAAVLESSL----SS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------------ 167 G++ + G+RA + + ++AVG ++P + VDV + T Sbjct: 109 GVADQIAPGERAIAVKVDETNAVGNKVRPGNFVDVFLNLKKDSAAGTTLAGNGGSEVPKT 168 Query: 168 --TVVLSNIRVIAIDHNIDSDERVLVG----STATLELTPMQAKALVAAQSVAKLSLVLR 221 ++LS IRVIA + + TA L + Q AL ++ L+L LR Sbjct: 169 QAKLLLSRIRVIAFGDATTARDSSGGALNGVRTAVLAVPAAQVDALTLGEASGSLTLALR 228 Query: 222 SIADLNPSS 230 + D ++ Sbjct: 229 NPRDEEVAT 237 >gi|148657460|ref|YP_001277665.1| SAF domain-containing protein [Roseiflexus sp. RS-1] gi|148569570|gb|ABQ91715.1| SAF domain [Roseiflexus sp. RS-1] Length = 260 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 90/258 (34%), Gaps = 26/258 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE-------VITENPAKFINVLISKGD 54 + + + + + + A+ AG + ++ V E I + ++ Sbjct: 3 RRSGWILLTLGVLLAIGAGALVYVVLQQQSVAAAEQARREVLAQQAPQVPTIKLPVAARS 62 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 L G + P+ + FP + V + + Q ++ ++ + +GDP + V Sbjct: 63 LTPGNAIGPDDILLKDFPVDLVPVNALTETTQ------IESRVLARAVGQGDPFQRSMFV 116 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------RSLSER 163 +S +P G I +I+ D +D+ + Sbjct: 117 GERGESVSQEIPPGYVLFAFPIVDLLGQSNLIEDGDRIDLYLTLNTPLDASAAPAPDQAT 176 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221 PT + L N++V+ + + +TA L + P A L + + LR Sbjct: 177 APTTALTLQNVQVLKVLRQAPREGETKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 236 Query: 222 SIADLNPSSSEDSDVWDV 239 S D P ++E ++ ++ Sbjct: 237 SPLDTEPFTTEPLNLPEL 254 >gi|254297794|ref|ZP_04965247.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] gi|157806884|gb|EDO84054.1| putative pilus assembly protein CpaB [Burkholderia pseudomallei 406e] Length = 299 Score = 109 bits (274), Expect = 3e-22, Method: Composition-based stats. Identities = 51/265 (19%), Positives = 95/265 (35%), Gaps = 27/265 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMAPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 ++ D TA L + Q AL A++ +L L LRS D + + ++ + Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDEDIA-AQTVAI 238 Query: 237 WDVQEEGKEIQIIKAGVIVNKDGEG 261 G Q V+ G G Sbjct: 239 RAPAGAGPSNQAATGLVLSELSGSG 263 >gi|307730007|ref|YP_003907231.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] gi|307584542|gb|ADN57940.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1003] Length = 317 Score = 109 bits (273), Expect = 3e-22, Method: Composition-based stats. Identities = 45/235 (19%), Positives = 89/235 (37%), Gaps = 27/235 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + AL+ G+IA+ L+ + ++ V+++ L G + + L Sbjct: 11 LLIAVALLLGVIAVTLLRRPAPAPVTSVRQS---LFPVVVAARLLPAGKPIAADALRVQP 67 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P +G + + G + I P+ E+L + GL+ + G+R Sbjct: 68 LPIH--PNGAFAEPSL------VAGRVPAADIGAEAPVLEEQL----SSGLAERIEPGER 115 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRVIAIDHN 182 A + + S+AVG ++P + VDV + +++S +RV+A + Sbjct: 116 AVAVRVEESNAVGNRLRPGNFVDVFFTLKRDGNMGSGGEIGQTQARLLMSKLRVLAFGNA 175 Query: 183 I----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 S ++ + TA L + L A+S +L LR+ D + Sbjct: 176 TATGDTSGDQNGMVRTAVLAVPVADVDRLTLAESSGRLVFALRNPKDPEVIDASA 230 >gi|170701751|ref|ZP_02892687.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] gi|170133334|gb|EDT01726.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria IOP40-10] Length = 301 Score = 109 bits (273), Expect = 4e-22, Method: Composition-based stats. Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 26/255 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L A+ + ++++ L G + + L+ Sbjct: 12 LLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPIVVAARLLPAGQPIPADALKLAQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 + G +D L G + IL P+ L GL+ + G+R Sbjct: 72 V--SMMPTGGFNDP------TALVGRVPANDILAAAPVLEGGLTS----GLADQVALGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VTVVLSNIRVI--- 177 A + + S+AVG ++P + VDV + ++LS +RV+ Sbjct: 120 AVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQATSEIPATQARLLLSKVRVLSFG 179 Query: 178 -AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 A TA L + Q AL A++ +L+L LR+ D ++ + Sbjct: 180 DATSDRDGGGGPSGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVR 239 Query: 237 WDVQEEGKEIQIIKA 251 E Q Sbjct: 240 TGGGEATPSAQAASG 254 >gi|83719123|ref|YP_443060.1| CpaB family Flp pilus assembly protein [Burkholderia thailandensis E264] gi|83652948|gb|ABC37011.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis E264] Length = 292 Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 88/234 (37%), Gaps = 26/234 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 1 MLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I+ P+ +L+ GL+ + G+R Sbjct: 61 TPAPIA--GAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 108 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 109 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 168 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 D D TA L + Q AL A++ +L L LRS D + ++ Sbjct: 169 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSPRDDDVAT 222 >gi|264680619|ref|YP_003280529.1| signal peptide protein, CpaB like protein [Comamonas testosteroni CNB-2] gi|262211135|gb|ACY35233.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni CNB-2] Length = 329 Score = 108 bits (271), Expect = 6e-22, Method: Composition-based stats. Identities = 48/241 (19%), Positives = 88/241 (36%), Gaps = 27/241 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + V+ + ++A +P P ++V+++ + G V+ L Sbjct: 11 VLLAVALALGIYGWMLAKAPQTPDPQAQTSASDSKPNANVSVVMASQPIPAGQVLKAEDL 70 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + P + DG ++ Q G + V I KG P+ ++V GL+ + Sbjct: 71 QVLQLPA--IPDGAYSEI------QAAVGSVPAVDIPKGAPVLQGQMVT----GLALKVS 118 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID--- 180 +G+RA + + + VG I+P D VDV + ++LS RV+A Sbjct: 119 EGERAVAVKVDENIGVGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGAAS 178 Query: 181 ---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TA L + + L+ S L L LR+ D+ Sbjct: 179 VDALSSAEKTEGKQANGPDNARTAVLAVPVAEVSQLLLGGSNGSLLLALRNPTDMTEPDR 238 Query: 232 E 232 E Sbjct: 239 E 239 >gi|134295594|ref|YP_001119329.1| SAF domain-containing protein [Burkholderia vietnamiensis G4] gi|134138751|gb|ABO54494.1| SAF domain protein [Burkholderia vietnamiensis G4] Length = 314 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/247 (19%), Positives = 96/247 (38%), Gaps = 36/247 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+ + I ++ + A ++ + H V + + NPA V+I+ L G + Sbjct: 7 KIIAGLLIAIAVLLGFYAWMLGR--SASHSVPAQPAVAANPAP---VVIATRTLPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + ++ A +V G + D + G + I PI + LV GL Sbjct: 62 AADAVKLQAI--ASVPTGAVVDPAT------VVGRVPARDIPASAPITPDALVS----GL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + + +++S Sbjct: 110 AEDIQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGAMFDGEVSQTQARLLMS 169 Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ S+ + A L + Q AL ++ +L+L LR+ Sbjct: 170 KVRVLSFGDATPERDSGSTTNGSNGQPSNARIAVLAVPTAQVDALTLGEATGRLTLALRN 229 Query: 223 IADLNPS 229 D + Sbjct: 230 PRDDELA 236 >gi|238027563|ref|YP_002911794.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1] gi|237876757|gb|ACR29090.1| Flp pilus assembly CpaB [Burkholderia glumae BGR1] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 51/246 (20%), Positives = 95/246 (38%), Gaps = 30/246 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 LT+++ + + + L+ M P V + AK + V+++ L G+ + Sbjct: 5 LTKVLAVALIAIAVLLGAYAWMLGSRPSSVPRVQGSQPAQAKLVPVVVAVQPLKAGLPIA 64 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + L DG D Q + G + I + + L + G++ Sbjct: 65 ASSLRVQQ--AAARPDGAFVDPVQ------IIGRVPSADIPEQAAVVESSL----SSGMA 112 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--------------KPTVT 168 L+ G+RA + + ++AVG ++P + VDV + K Sbjct: 113 DLVKPGERAVAIKVDENNAVGNHMRPGNFVDVFVNLKRDAAGGLPGTNSSGPEIPKTQAK 172 Query: 169 VVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 ++LS IRV+A + + TA L + Q AL A++ L+L LRS Sbjct: 173 LLLSKIRVLAFGDATTARDPSGGAAGGVRTAVLAVPTAQIDALTLAEASGNLTLALRSPR 232 Query: 225 DLNPSS 230 D + ++ Sbjct: 233 DEDVAT 238 >gi|254252521|ref|ZP_04945839.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] gi|124895130|gb|EAY69010.1| Flp pilus assembly protein CpaB [Burkholderia dolosa AUO158] Length = 308 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 48/264 (18%), Positives = 97/264 (36%), Gaps = 38/264 (14%) Query: 6 LMGIVVSGVFALVAGIIAMRLV----SPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 L I+ + A+ + A + SP +++ NP F+ I+ L G + Sbjct: 5 LTKIIAGLLIAIAVLLGAYAWMLGRSSPAPAPAPQIVAANPMPFV---IATRTLPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ + ++ G + E+ G + I PI LV GL Sbjct: 62 AADALKVQS--TTSIPAGAFANP------GEVVGRVPAKDIAASSPIVAGALVS----GL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172 + + G+RA + + ++AV ++P + VDV + + ++LS Sbjct: 110 AEDVQPGERAVAIRVDETNAVANRLRPGNFVDVFLNLKRDGGGAMLDGEISQTQARLLLS 169 Query: 173 NIRVIAIDHNI----------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ S+ + A L + Q AL ++ +L+L LR+ Sbjct: 170 RVRVLSFGDATPERDSGSSTNGSNGQPSSVRIAVLAVPTAQVDALTLGEASGRLTLALRN 229 Query: 223 IADLNPSSSEDSDVWDVQEEGKEI 246 D ++ + D + + Sbjct: 230 PRDDELATQTVAVRTDNKRSPSAL 253 >gi|163856387|ref|YP_001630685.1| putative secreted protein [Bordetella petrii DSM 12804] gi|163260115|emb|CAP42416.1| putative secreted protein [Bordetella petrii] Length = 281 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 91/225 (40%), Gaps = 18/225 (8%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + E+ E ++ L+ DL G + L P V G D P A Sbjct: 37 QARVREIEREAEVLAVDKLVVATDLPAGTRLQAGHLAVRDIPVPWVASGSFD----PEAA 92 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGL-SSLLPKGKRAATMDISISSAVGGMIKPN 149 ++ G ++ + +GD + L S L+P G+RA T+ +A G+++ Sbjct: 93 DQVIGAVLAADLRQGDALLDVHLAPAVAAPALSELVPAGRRAVTLPAEEINAAAGLLRAG 152 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVA 209 D +D+ + + + T ++ +RV+A++ D+ + TL+ + A LVA Sbjct: 153 DLIDLYVSFAHRGQHLTA-PLMQGVRVLAMESGADA------APSITLDASAQDAIKLVA 205 Query: 210 AQSVAKLSLVLRSIAD-LNPSSSEDSDVW-----DVQEEGKEIQI 248 A+ L+ +LR D P + D+ D +E G + Sbjct: 206 ARHGGTLTAMLRHRGDGAAPPVTASGDLAALMGIDAREAGPRTAV 250 >gi|33593510|ref|NP_881154.1| putative secretory protein [Bordetella pertussis Tohama I] gi|33572866|emb|CAE42801.1| putative secretory protein [Bordetella pertussis Tohama I] gi|332382918|gb|AEE67765.1| putative secretory protein [Bordetella pertussis CS] Length = 281 Score = 107 bits (268), Expect = 1e-21, Method: Composition-based stats. Identities = 53/248 (21%), Positives = 97/248 (39%), Gaps = 14/248 (5%) Query: 1 MKLTRLMGIVVSG---VFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLA 56 M+ R + + FALVAG +A H + I + + L++ DL Sbjct: 1 MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAALDLE 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-D 115 G + ++ P+ + G + P+ LDG ++R P+ G+ ++ L Sbjct: 61 AGTPLHDELVAVRDMPQAWLPAGAL----LPDEAARLDGAVLRAPVKAGEALQAALLSYP 116 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 L+ L G+ A T+ + + +P D VD+ + + +R+ +L+ + Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 V+A+D ST TL + + LVAA+ L+ VLR + Sbjct: 176 VLALDPADAQGG----ASTITLRASAREVARLVAARQEGTLTAVLRRAGAPAQGPARAFA 231 Query: 236 VWDVQEEG 243 +E G Sbjct: 232 APSAREAG 239 >gi|33601079|ref|NP_888639.1| hypothetical protein BB2096 [Bordetella bronchiseptica RB50] gi|33575514|emb|CAE32592.1| putative exported protein [Bordetella bronchiseptica RB50] Length = 277 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 14/225 (6%) Query: 1 MKLTRLMGIVVSG---VFALVAGIIAMRLVSPHHVQTEEVITENP-AKFINVLISKGDLA 56 M+ R + + FALVAG +A H + I + + L++ DL Sbjct: 1 MRAARWRQGLRALGGYAFALVAGSLAAWAAREHIQRRVHDIEQQARVPMVASLVAARDLE 60 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV-D 115 G + ++ P+ + G + P+ LDG ++R P+ G+ ++ L Sbjct: 61 AGTPLHDELVAVRDMPQAWLPAGAL----PPDEAARLDGAVLRAPVKAGEALQAALLSYP 116 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 L+ L G+ A T+ + + +P D VD+ + + +R+ +L+ + Sbjct: 117 EQTPALTEQLEAGQGAITLPLQELPGLSAAARPGDLVDLYVSFTHRQRQ-LTMPLLAGSK 175 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V+A+D ST TL + + LVAA+ L+ VL Sbjct: 176 VLALDPADAQGG----ASTITLRASAREVARLVAARQEGTLTAVL 216 >gi|115351455|ref|YP_773294.1| CpaB family Flp pilus assembly protein [Burkholderia ambifaria AMMD] gi|115281443|gb|ABI86960.1| Flp pilus assembly protein CpaB family [Burkholderia ambifaria AMMD] Length = 301 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 48/255 (18%), Positives = 88/255 (34%), Gaps = 26/255 (10%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L A+ + ++++ L G + + L+ Sbjct: 12 LLIAIAVLLGIYAWTLGRAPAHPPVVATPTVAAQSVPLVVAARVLPAGQPIPADALKLAQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P + G D L G + IL P+ L GL+ + G+R Sbjct: 72 VP--MMPTGGFSDP------TALVGRVPANDILAAAPVLEGALTS----GLADQVALGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT----------VTVVLSNIRVIAID 180 A + + S+AVG ++P + VDV + ++LS +RV++ Sbjct: 120 AVAVKVDESNAVGNRLRPGNFVDVFLNLRRDGSGGAQVNSEIPATQARLLLSRVRVLSFG 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + TA L + Q AL A++ +L+L LR+ D ++ + Sbjct: 180 DATSDRDGGGGPGGAVRTAVLAVPTAQVDALTLAEASGRLTLALRNPRDTEIATQTVAVR 239 Query: 237 WDVQEEGKEIQIIKA 251 Q Sbjct: 240 TGGGGATPSAQAASG 254 >gi|114321312|ref|YP_742995.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114227706|gb|ABI57505.1| Flp pilus assembly protein CpaB-like protein [Alkalilimnicola ehrlichii MLHE-1] Length = 316 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 53/257 (20%), Positives = 89/257 (34%), Gaps = 33/257 (12%) Query: 1 MKLTRLMGIVVSGV-FALVAGIIAMRLVSPHHVQ---------TEEVITENPAKFINVLI 50 M L+ + + + ALV G + LV+ + E V+ Sbjct: 1 MNSRVLIVLAIVFIGAALVVGWWGISLVTDDESEIRIDEVTDVPEPDEPRPDEDGHPVVF 60 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + +L G +V + V D +E+ G+ V PI +G+ + Sbjct: 61 AVTELEPGQLVGEADIHTETL--RRVPPLAFSDP------EEVIGLRVEAPIQEGELLTA 112 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 + +S L G+RA + + VGG + P D VDV++ S ++ Sbjct: 113 PRFSVASQ--VSRGLLPGERAVAISVDDVIGVGGYLSPGDRVDVMLYLSQRGVGEIGRLL 170 Query: 171 LSNIRVIA------------IDHNIDSD-ERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 NIRV+A +D + +R TA L L L+ A S L Sbjct: 171 HPNIRVLAYGEDLAIPPDGVVDRRDEEGTQRQRGARTAVLALPEEDVATLLLADSAGTLR 230 Query: 218 LVLRSIADLNPSSSEDS 234 L R + P ++ Sbjct: 231 LAARPAIERRPDFDPEA 247 >gi|78066130|ref|YP_368899.1| Flp pilus assembly CpaB [Burkholderia sp. 383] gi|77966875|gb|ABB08255.1| Flp pilus assembly CpaB [Burkholderia sp. 383] Length = 300 Score = 106 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 44/240 (18%), Positives = 91/240 (37%), Gaps = 31/240 (12%) Query: 10 VVSGVFALVAGIIAMR--LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 +++G+ +A ++ + ++ V + + V+++ L G + + L+ Sbjct: 8 IIAGLLIAIAVLLGVYAWMLGRKPADVAPVAATVATQSVPVVVTTRALPAGQPIPADALK 67 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 G D Q L G + I I L + GL+ + Sbjct: 68 VQQ--STAAPQGAFADPLQ------LVGRVPAADIPAQAAIVASAL----SSGLAEQIAP 115 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNI 174 G+RA + + ++AVG ++P ++VDV + +++S + Sbjct: 116 GERAVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKV 175 Query: 175 RVIAIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 RV++ S+ V+ TA L + Q AL A+ +L L LR+ D + ++ Sbjct: 176 RVLSFGDATTERDSSNGSVVGMRTAVLAVPTAQVDALTLAEQSGRLVLALRNPRDDDVAA 235 >gi|187478777|ref|YP_786801.1| pilus assembly protein [Bordetella avium 197N] gi|115423363|emb|CAJ49897.1| putative pilus assembly protein [Bordetella avium 197N] Length = 270 Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 90/232 (38%), Gaps = 19/232 (8%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + ++ N + L++ DL G ++T + + P+ P Sbjct: 46 QAKERDLQHRNQVVMVTRLVAWADLEAGQLLTEDDIASREIPKNWAP----HQSLSPEQT 101 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 L G ++VP++ G PI + + G ++ L GKRA T+ + + + ++ D Sbjct: 102 GLLIGSRLKVPVMAGQPILQADIEFV-SPGTAARLGVGKRALTLPVRELADMPPDMREGD 160 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 +D+ + + +++ T+ +L N +V+A LE ++AA Sbjct: 161 RLDIYVSLTHHDKRLTL-PLLQNGKVLA-------APGPESAQVV-LEADAQDVTRVIAA 211 Query: 211 QSVAKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 + L+L LRS D + +D+ + EEG + G N Sbjct: 212 RQAGSLTLALRSPEDAAYPAHDEPGGALADILGLAEEGDAGVPVLYGDESND 263 >gi|107022593|ref|YP_620920.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116689542|ref|YP_835165.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|170732846|ref|YP_001764793.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] gi|105892782|gb|ABF75947.1| Flp pilus assembly CpaB [Burkholderia cenocepacia AU 1054] gi|116647631|gb|ABK08272.1| Flp pilus assembly CpaB [Burkholderia cenocepacia HI2424] gi|169816088|gb|ACA90671.1| Flp pilus assembly protein CpaB [Burkholderia cenocepacia MC0-3] Length = 301 Score = 105 bits (263), Expect = 5e-21, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 87/237 (36%), Gaps = 30/237 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ G+ A ++ V + + V+++ L G + L+ Sbjct: 12 LLIAIAILLGVYA-WMLGRKPADVAPVAATVATQSVPVVVTTRPLQAGQPIPAEALKVQQ 70 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 G D Q L G + I + L + GL+ L G+R Sbjct: 71 --STAAPQGAFADPLQ------LVGRIPAADIPAQAAVVASAL----SSGLAEQLAPGER 118 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNIRVI 177 A + + ++AVG ++P ++VDV + +++S +RV+ Sbjct: 119 AVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKVRVL 178 Query: 178 AIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + S+ V+ TA L + Q AL A+ +L L LRS D + ++ Sbjct: 179 SFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRSPRDEDVAT 235 >gi|171317112|ref|ZP_02906315.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5] gi|171097746|gb|EDT42573.1| Flp pilus assembly protein CpaB [Burkholderia ambifaria MEX-5] Length = 308 Score = 105 bits (262), Expect = 8e-21, Method: Composition-based stats. Identities = 50/256 (19%), Positives = 92/256 (35%), Gaps = 36/256 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+ + I ++ + L A ++ V T A + V+++ L G + Sbjct: 7 KIIAGLLIAIAVLLGLYA-----WMLGRSSPGPAPVSTTFAANPVPVVVATRALPAGQPI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L+ P G D L G + I PI LV GL Sbjct: 62 AADALKLQ--PIAPAPTGAFGDPAM------LVGRVPAKEIAASSPIVAGALVS----GL 109 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLS 172 + + G+RA + + ++AVG ++P + VDV + + ++LS Sbjct: 110 AEDVQPGERAIAVRVDETNAVGNRLRPGNFVDVFLNLKREGGGTMIDGEVSQTQARLLLS 169 Query: 173 NIRVIAI-DHNIDSD---------ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 +RV++ D D D + A L + Q AL ++ +L+ LR+ Sbjct: 170 KVRVLSFGDATPDRDSGSNSNSNNGQPSNARIAVLAVPTAQVDALTLGEASGRLTFALRN 229 Query: 223 IADLNPSSSEDSDVWD 238 D ++ + D Sbjct: 230 PRDDELATQTVAMRTD 245 >gi|299532818|ref|ZP_07046205.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni S44] gi|298719042|gb|EFI60012.1| putative signal peptide protein, CpaB like protein [Comamonas testosteroni S44] Length = 329 Score = 104 bits (261), Expect = 9e-21, Method: Composition-based stats. Identities = 50/272 (18%), Positives = 92/272 (33%), Gaps = 30/272 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + V+ + ++A + + ++V+++ + G + L Sbjct: 11 VLLAVALALGVYGWMLARAPQAADPQASASASDSKSNAGMSVVVAAQAIPAGQALKTEDL 70 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + DG +Q G + V + KG P+ ++V GL+ L Sbjct: 71 QLTQLPAK--PDGAY------GEIQAAVGSVPAVDVPKGAPVLQGQMVT----GLALKLS 118 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID--- 180 +G+RA + + S G I+P D VDV + ++LS RV+A Sbjct: 119 EGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGAAS 178 Query: 181 ---------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 TA L + + L+ S L L LR+ D+ S Sbjct: 179 VDALSSAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSNGSLLLALRNPMDMTEPDS 238 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 E + + K V V +G + Sbjct: 239 EKFAPL---PGILAVAMAKGSVAVPLEGADAA 267 >gi|206559893|ref|YP_002230657.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] gi|198035934|emb|CAR51826.1| flp type pilus assembly protein [Burkholderia cenocepacia J2315] Length = 301 Score = 104 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 87/237 (36%), Gaps = 30/237 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ G+ A ++ V + + V+++ L G + + L+ Sbjct: 12 LLIAIAILLGVYA-WMLGRKPGDVAPVAATVATQSVPVVVTTRPLQAGQPIPADALKVQQ 70 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 G D Q L G I + L + GL+ + G+R Sbjct: 71 --STAAPQGAFADPLQ------LVGRTPAADIPAQAAVVASAL----SSGLAEQIAPGER 118 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT-------------VTVVLSNIRVI 177 A + + ++AVG ++P ++VDV + +++S +RV+ Sbjct: 119 AVAIKVDETNAVGNRVRPGNYVDVFLNLKRDGTGVAIGGTSTAEIVNTQARLLMSKVRVL 178 Query: 178 AIDHNI----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + S+ V+ TA L + Q AL A+ +L L LR+ D + ++ Sbjct: 179 SFGDATTERDSSNGSVVGTRTAVLAVPTAQVDALTLAEQSGRLVLALRNPRDDDVAT 235 >gi|187926426|ref|YP_001892771.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|241665913|ref|YP_002984272.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] gi|187728180|gb|ACD29344.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12J] gi|240867940|gb|ACS65600.1| Flp pilus assembly protein CpaB [Ralstonia pickettii 12D] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 88/244 (36%), Gaps = 28/244 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 S H ++ V+++ L G +T + + P DV Sbjct: 25 WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 ++ G +P+ G P+ +L + GL+ + G+RA +++ VG Sbjct: 82 -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVVGVGNR 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAID------------HNIDSDERVL 190 + P D+VDV +V ++ ++L ++RV+A N +V Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAINEGPQKQPENSGVTRKVD 192 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QII 249 TA L + L A +L L LR+ D + + D + + + Sbjct: 193 QAKTAVLAVPVEAVSQLAMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252 Query: 250 KAGV 253 +AGV Sbjct: 253 QAGV 256 >gi|257064753|ref|YP_003144425.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] gi|256792406|gb|ACV23076.1| Flp pilus assembly protein CpaB [Slackia heliotrinireducens DSM 20476] Length = 273 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/241 (19%), Positives = 94/241 (39%), Gaps = 16/241 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + + GI+ AL + A +L + Q E + + V ++ D+A G V Sbjct: 4 RKSVVFGILCGIACALCVAMYAQQLQADADAQRAEALARYGGEQTEVWVATRDIAPGETV 63 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 E+ + E + + D+ L+ + PI++G+ I ++ V L Sbjct: 64 DETNAEYRMWLVELLPHDAVSDLAG------LESRVATSPIVQGEVISAQRFVADDEA-L 116 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 + +P+G A ++ + VGG I+ VDV + T ++ ++ V+ Sbjct: 117 GTPVPEGLCAVSVPAEDVATVGGSIRAGSRVDVYV-----SSGTTTDLLAHDVLVLFT-- 169 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 + S + S ATL + P + L++A L L +D + + + E Sbjct: 170 SASSADGSEAISWATLAVEPEMVQELISAAERTSLYFSL--PSDSVLADGSYATESEKGE 227 Query: 242 E 242 Sbjct: 228 A 228 >gi|309778770|ref|ZP_07673543.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] gi|308922478|gb|EFP68102.1| Flp pilus assembly protein CpaB [Ralstonia sp. 5_7_47FAA] Length = 307 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 47/244 (19%), Positives = 90/244 (36%), Gaps = 28/244 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 S H ++ V+++ L G +T + + P DV Sbjct: 25 WKSAHRPPAPVAEQKDGKAVYPVVVTTKPLEAGKPITADQVAIEQLPIN--PAEAFSDV- 81 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 ++ G +P+ G P+ +L + GL+ + G+RA +++ VG Sbjct: 82 -----TKVVGREPILPVGVGVPLIASQL----SSGLAQQVEAGQRAVAINVDEVIGVGNR 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE------------RVL 190 + P D+VDV +V ++ ++L ++RV+A ++ +V Sbjct: 133 VMPGDYVDVFLVMRKDGQEIEDSQARLLLPHLRVLAFGPLAVNEGPQKQPESNNVTRKVD 192 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI-QII 249 TA L + LV A +L L LR+ D + + D + + + Sbjct: 193 QAKTAVLAVPVEAVSQLVMAHQSGRLLLALRNPGDDAEPTVKPQDAALLAAANRNPMDVA 252 Query: 250 KAGV 253 +AGV Sbjct: 253 QAGV 256 >gi|156744073|ref|YP_001434202.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235401|gb|ABU60184.1| SAF domain protein [Roseiflexus castenholzii DSM 13941] Length = 267 Score = 104 bits (259), Expect = 1e-20, Method: Composition-based stats. Identities = 42/258 (16%), Positives = 91/258 (35%), Gaps = 26/258 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----ENPAKFINVL---ISKGD 54 + + + + + + A+ AG + ++ V E A + V+ ++ Sbjct: 10 RRSGWILLTLGAILAIGAGALVYLVLQQQSVAAAEQARREVLAQQAPQVPVIKLPVAARP 69 Query: 55 LAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 LA G + P+ + +P V + D Q ++ ++ + +GDP + V Sbjct: 70 LAPGNTIGPDDILLKDYPVNLVPVNALTDTTQ------IENRILARTVGQGDPFQKSMFV 123 Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV------- 167 +S +P G I +I D +D+ + + Sbjct: 124 GERGESISQEIPPGYVLFAFPIVDLLGQSNLIADGDRIDLYLTLNTPLNAAATPAPDQPT 183 Query: 168 ----TVVLSNIRVIAIDHNIDSDERVLVGSTATL-ELTPMQAKALVAAQSV-AKLSLVLR 221 + L N++V+ + + + +TA L + P A L + + LR Sbjct: 184 TPTTALTLQNVQVLKVLRSEPREGATKTPATALLCAMRPEDAIILKHIKDTGGTIDFALR 243 Query: 222 SIADLNPSSSEDSDVWDV 239 S D P ++E D+ ++ Sbjct: 244 SPLDTEPFTTEPLDLPEL 261 >gi|311107632|ref|YP_003980485.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8] gi|310762321|gb|ADP17770.1| Flp pilus assembly protein CpaB 2 [Achromobacter xylosoxidans A8] Length = 319 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 55/247 (22%), Positives = 92/247 (37%), Gaps = 28/247 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA---KFINVLISKGDLAVG 58 K+ M +V V A VA +A SP + PA K V++++ + G Sbjct: 6 KIVAGMLLVAGLVLAFVAWRLASAPASPPPGVAPAPVAAAPAEPLKLHPVVVARQPIPAG 65 Query: 59 MVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + + ++L + + G D+ L+G + +V I GDPI L Sbjct: 66 SRIDSASMLTVAQW--QVALSGGFADIAP------LEGAVAKVDIAAGDPIVPSLLTQ-- 115 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIR 175 GL+ L G+RA + + G I P D VDV + S ++ S +R Sbjct: 116 --GLARQLKPGERAVAIAVDEVIGGGNRIVPGDMVDVFFMIEKSAEVAVGQARLLQSQVR 173 Query: 176 VIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 V+A + TA L + + L+ A +L L LR + D Sbjct: 174 VLAYGRASVEGPDEKSALQQGGPGQPARTAVLAVPVDRVNELMLAGRAGRLQLALRPVGD 233 Query: 226 LNPSSSE 232 + ++ Sbjct: 234 DSMPDAQ 240 >gi|330976800|gb|EGH76835.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 329 Score = 104 bits (259), Expect = 2e-20, Method: Composition-based stats. Identities = 48/283 (16%), Positives = 94/283 (33%), Gaps = 53/283 (18%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFIN------------ 47 M M + V + AL+AG + + + P V E + P Sbjct: 11 MSSRVTMVLAVLFLLGALIAGYLGIVVGRPTEVPVETPPSAPPVTTKQTTPPAPTPHVEE 70 Query: 48 -----VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 V++ D+ +T + L + G A+ ++ G + Sbjct: 71 ALRHNVVVLAKDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 122 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + + G + P D+VDV++ + Sbjct: 123 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 180 Query: 161 SERKPTVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 S + VV+ +RV+ + D + +++ + T T+ + Sbjct: 181 SNPNRSSQVVVPALRVLGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVAVPQA 240 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 L+ A L L +RS + N D W + G E Sbjct: 241 LVARLMLASQTGVLRLAVRSADEGNL-----QDYWANEAGGPE 278 >gi|167562916|ref|ZP_02355832.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis EO147] Length = 226 Score = 103 bits (258), Expect = 2e-20, Method: Composition-based stats. Identities = 48/227 (21%), Positives = 85/227 (37%), Gaps = 26/227 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L T + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPAAPSAATAVATAVVPVVVATRALPTGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I+ P+ +L+ GL+ + G+R Sbjct: 72 MPASVA--GAFSNPAL------VTGRIPASDIVAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV M + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFMNMKRESSFGTTGSEISQSQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 D D TA L + Q AL A++ +L L LRS Sbjct: 180 ATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEASGRLVLALRSP 226 >gi|299069499|emb|CBJ40768.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CMR15] Length = 310 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 49/262 (18%), Positives = 96/262 (36%), Gaps = 28/262 (10%) Query: 1 MKLTRLMGIVV-SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M L + A++ G++A + EN V+++ L G Sbjct: 1 MTSKYLQIFAAGLLLLAVILGVVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGK 60 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + + + P I+ + + ++ G VPI G P+ +L + Sbjct: 61 PITADQVGVESLP--------INPADGFSEVNKVVGREPIVPIGIGVPLIGSQL----SS 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRV 176 GL+ + G+RA + + VG + P D+VDV +V ++ ++L ++RV Sbjct: 109 GLALQVEPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRV 168 Query: 177 IAIDHNIDSDE------------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +A ++ RV TA L + L +Q +L + LR+ + Sbjct: 169 LAFGPLAVNEGPQKQGDAGAVARRVDQAKTAVLAVPVESVSQLAISQQSGRLLMALRNPS 228 Query: 225 DLNPSSSEDSDVWDVQEEGKEI 246 D + D + + Sbjct: 229 DEAEPTVRPQDAQTLAVANRNP 250 >gi|188592031|ref|YP_001796629.1| flp pilus assembly cpab [Cupriavidus taiwanensis LMG 19424] gi|170938405|emb|CAP63392.1| putative Flp pilus assembly CpaB [Cupriavidus taiwanensis LMG 19424] Length = 316 Score = 103 bits (257), Expect = 2e-20, Method: Composition-based stats. Identities = 48/240 (20%), Positives = 91/240 (37%), Gaps = 27/240 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++ + + + V + V Q P V+++ G Sbjct: 1 MTSKQIRLLAIVLLGLAVLLALLAWQVGRQPAQPAASAGARPMH--AVVVTTRPAEAGKP 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L+ P + G DV + + G + V + P+ +L+ G Sbjct: 59 LDAEALKVEMLPID--PAGAYRDVAR------VTGQVPLVALGANVPVLESQLLS----G 106 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVI 177 L++ +P+G+RA + + VG ++P D+VDV +V +++ ++LS +RV+ Sbjct: 107 LAAQVPEGERAVAVSVDEVIGVGNQVQPGDYVDVFLVLRRDQQEIPDSQARMLLSRLRVL 166 Query: 178 AID-------HNIDSDE---RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 A + ++ R TA L + Q L AQ +L L LR+ D Sbjct: 167 AYGVASVNRPQAVKPEQMMARQEGAKTAVLSVPLEQVSRLAMAQHSGRLMLALRNPQDEA 226 >gi|187921505|ref|YP_001890537.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] gi|187719943|gb|ACD21166.1| Flp pilus assembly protein CpaB [Burkholderia phytofirmans PsJN] Length = 366 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 47/286 (16%), Positives = 102/286 (35%), Gaps = 42/286 (14%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ + V A + ++ L +++ + V++ D+ V ++ + Sbjct: 16 ILLFLAVLVAAGLTFLLYKYLSDREKKLKDDMSAHRVRAGVVVVVPARDVPVDTPLSSSD 75 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + V DD+ + + + + P+ +G P+R + S +L Sbjct: 76 FVAREIDGDLV----YDDMIRADNFDKYRMSHLVKPVRRGLPLRAADIDALHGRDFSDVL 131 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL------SERKPTVTVVLSNIRVIAI 179 G RA T+DI ++ M++P + VDV + + ++ K ++L+N ++A Sbjct: 132 RSGTRAVTVDIDTVNSTALMLRPGNRVDVYWIGKVYHQDNSNDDKKVAQLMLANTLILAT 191 Query: 180 DHNID--------------------SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 ++ S + + +T TLE+ A + AQ + L L+ Sbjct: 192 GQDMRPRDAGEAMQEDPANANSSAMSRQPGVGYTTVTLEVPVADAGRIALAQKIGGLRLI 251 Query: 220 LRSIADLNP------------SSSEDSDVWDVQEEGKEIQIIKAGV 253 LR+ D + K ++II G Sbjct: 252 LRNSDDKGTNGPSLVQENDVFVDPGRGRLSGSGPAPKTVEIIAGGS 297 >gi|320101691|ref|YP_004177282.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644] gi|319748973|gb|ADV60733.1| Flp pilus assembly protein CpaB [Isosphaera pallida ATCC 43644] Length = 436 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 71/173 (41%), Gaps = 7/173 (4%) Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDI 136 F D I KG+ I + L D G+ + + G R ++ + Sbjct: 155 PVFFDRAGLQRLADAKSPYWASQTIGKGEIITRDMLGDPATIPGVYTNVRPGYRGISIKV 214 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDER--VLVGST 194 + + GG + P ++VDV ++ + T ++L N++V+A+ I D + + T Sbjct: 215 TPETGGGGHVLPGNYVDV---GAVYTNQRTAKILLQNVKVLAVGEAIKPDPKKAAMNAQT 271 Query: 195 ATLELTPMQAKALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEI 246 LEL P +A L A L L++R D S + +V + E + + Sbjct: 272 VVLELKPEEANLLQVAVGQRGTLRLLIRGNKDDQLLSEDKLEVVYGESEAERL 324 >gi|300694112|ref|YP_003750085.1| flp pilus assembly protein precursor (cpab) [Ralstonia solanacearum PSI07] gi|299076149|emb|CBJ35462.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum PSI07] Length = 310 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 88/243 (36%), Gaps = 29/243 (11%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFI--NVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 + A+ + H +N V+++ L G +T + + + P Sbjct: 20 LGAVAWKNAHRPPAPVAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PA 77 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 DV ++ G VPI G P+ +L + GL+ + G+RA + + Sbjct: 78 DAFADVS------KVVGREPIVPIGVGVPLIGSQL----SSGLALQVVPGQRAVAITVDE 127 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDE-------- 187 VG + P D+VDV +V ++ ++L ++RV+A ++ Sbjct: 128 VVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAVNEGPQKQPDAN 187 Query: 188 ----RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 RV TA LE+ L A +L L LR+ +D + D + Sbjct: 188 ALTRRVDQAKTAVLEVPVESVNQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQALAVAN 247 Query: 244 KEI 246 + Sbjct: 248 RNP 250 >gi|297568754|ref|YP_003690098.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2] gi|296924669|gb|ADH85479.1| Flp pilus assembly protein CpaB [Desulfurivibrio alkaliphilus AHT2] Length = 292 Score = 103 bits (257), Expect = 3e-20, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 83/215 (38%), Gaps = 21/215 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E A + ++++ L+ G +T ++ V P V ++++E+ Sbjct: 46 AKPEETAADWPRIVVAGQPLSRGEPITAAAVQLV--PARLVPPDSF------SSLEEVVE 97 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 V + G+P+ + L+ +L +RA + ++ + VGG + P DHVDV+ Sbjct: 98 RRPAVSLQIGEPLTKRHFLPGSE--LAHVLDPDERAVAIVVNDAIGVGGFLAPGDHVDVL 155 Query: 156 MVRSLSERK---PTVTVVLSNIRVIAIDH---NIDSDERVLVGS-----TATLELTPMQA 204 + + +R+ ++L+ R++A + + G+ TA L + A Sbjct: 156 LYLAADQRRRQPAQARILLARQRLLAYGQAPAAAKAGTQPARGAGRGSDTAVLAVRTEDA 215 Query: 205 KALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 L+ A V L L L E D Sbjct: 216 PKLLLAAQVGTLHLALHGPEPGRVLGEEADSTLDA 250 >gi|323525745|ref|YP_004227898.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] gi|323382747|gb|ADX54838.1| Flp pilus assembly protein CpaB [Burkholderia sp. CCGE1001] Length = 320 Score = 102 bits (254), Expect = 6e-20, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 75/213 (35%), Gaps = 24/213 (11%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 + V+++ L G + + L P +G D Sbjct: 30 PAPAPVAPVRQTVFPVVVATRVLPAGKPIAADALRVQPLPIN--PNGAFADPSL------ 81 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 + G + I P+ E+L + GL+ + G+RA + + S+AVG ++P + V Sbjct: 82 VAGRVPAADIGAEAPVLEEQL----SSGLAERIQPGERAVAVRVEESNAVGNRLRPGNFV 137 Query: 153 DVVMVRSLSERKPT--------VTVVLSNIRVIAIDHNI----DSDERVLVGSTATLELT 200 DV + +++S +RV+A + S + + TA L + Sbjct: 138 DVFFTLKRDGNLGSGGEIEHTQARLLMSKLRVLAFGNATAAGDTSGDPNGMVRTAVLAVP 197 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 L A++ +L LR+ D + Sbjct: 198 VADVDRLTLAETSGRLVFALRNPKDNEVIDAGA 230 >gi|317489770|ref|ZP_07948269.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] gi|316911116|gb|EFV32726.1| flp pilus assembly protein CpaB [Eggerthella sp. 1_3_56FAA] Length = 306 Score = 101 bits (253), Expect = 7e-20, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 87/231 (37%), Gaps = 3/231 (1%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R+ + ++ +++ + + A + L++ D+ G +T Sbjct: 76 VRVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPTLVAAADIRAGDAITA 135 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + P + +A G V I G + + G LS+ Sbjct: 136 EAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRLSA 194 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 L G +A T+ + + + + G ++P D V +V S + + V RV+A+ Sbjct: 195 ELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGD-- 252 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 D+ ++ T+E++P +A A+ AQ ++SLVL + D D Sbjct: 253 DATGVQSGSASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303 >gi|257790321|ref|YP_003180927.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325830034|ref|ZP_08163491.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] gi|257474218|gb|ACV54538.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325487501|gb|EGC89939.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] Length = 306 Score = 101 bits (253), Expect = 8e-20, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 88/231 (38%), Gaps = 3/231 (1%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R+ + ++ +++ + + A + L++ D+ G +T Sbjct: 76 VRVKRLATIVAASVALTAVSVSYGVWSAAASRAAVEHATAGALPTLVAAADIRAGDAITA 135 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + P + +A G V I G + + G LS+ Sbjct: 136 EAVTVQDVPATYRAASAL-GGEALDAEGLAAGGRAIVDIPAGTQLSSSFVTGMGGDRLSA 194 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI 183 L G +A T+ + + + + G ++P D V +V S + + V RV+A+ + Sbjct: 195 ELGAGLQAVTLAVDVETGLAGHVRPYDTVRIVSAEGASAGEAFLETVCERARVVAVGDDA 254 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 S + ++ T+E++P +A A+ AQ ++SLVL + D D Sbjct: 255 TSVQSGS--ASVTVEVSPEEADAVREAQFAGRVSLVLVAADDAFEEVGADG 303 >gi|258627505|ref|ZP_05722286.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] gi|258580311|gb|EEW05279.1| Flp pilus assembly protein CpaB [Vibrio mimicus VM603] Length = 112 Score = 101 bits (251), Expect = 1e-19, Method: Composition-based stats. Identities = 33/106 (31%), Positives = 53/106 (50%), Gaps = 6/106 (5%) Query: 147 KPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE-RVLVGSTATLELTPMQAK 205 P + VDV+ S S+ VL +I+V+A+D S E + ++ TLE+TP QA+ Sbjct: 2 LPGNRVDVLNTVSYSKGSAVTNTVLKDIKVLAVDQTARSKENKPIIVRAVTLEVTPEQAE 61 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKA 251 L++AQS ++ L LR+ P E+ + + IIK Sbjct: 62 KLLSAQSKGEIQLTLRN-----PHEPEEKVAVTRRYVAPSVTIIKG 102 >gi|300697743|ref|YP_003748404.1| Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CFBP2957] gi|299074467|emb|CBJ54017.1| putative Flp pilus assembly protein precursor (CpaB) [Ralstonia solanacearum CFBP2957] Length = 311 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 46/239 (19%), Positives = 84/239 (35%), Gaps = 31/239 (12%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFI--NVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 + A+ S H V +N V+++ L G + + + + P Sbjct: 20 LGAVAWKSAHRPPAPAVAQQNENGKTLYPVVVTIKPLEAGKPIAADQVAVQSLPIN--PA 77 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 DV ++ G VPI G P+ +L + GL+ + G+RA + + Sbjct: 78 DAFADV------GKVVGREPIVPIGIGVPLIGSQL----SSGLALQVAPGQRAVAITVDE 127 Query: 139 SSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNI----DSDERVLV 191 VG + P D+VDV +V ++ ++L ++RV+A + Sbjct: 128 VVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPEAG 187 Query: 192 GSTAT----------LELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 +T T L + L A +L L LR+ +D + D + Sbjct: 188 ANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDALALA 246 >gi|168703131|ref|ZP_02735408.1| flp pilus assembly protein [Gemmata obscuriglobus UQM 2246] Length = 442 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 33/271 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ +VV+ LVA + ++ + P + + V+++ DL VG + Sbjct: 1 MKQKNVILMVVAVGCGLVAAFLTAQM------------SAKPIEQMEVVVAAKDLPVGTM 48 Query: 61 VTPNILEW----VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + L+ V P+E + + + +EL + PI + I + L Sbjct: 49 LGKEDLKAAVKIVKRPKEGLPPTVVLNP------EELVDKRLSRPIRAEEVINSQDLSKG 102 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 G LP+G ++ + A G + P V+V L K +L ++ V Sbjct: 103 GV----ITLPEGYHMVSLQLGAGQAAAGFVGPGSRVNVHATMRLGN-KIEAFPLLVDMLV 157 Query: 177 IAIDHNI--DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSE- 232 +A+ + + + + QA L A+S + L+LR + S Sbjct: 158 VAVGTETAYSKEGTFPNLNMVSFAVQEKQALLLSLAKSRGCNIELMLRHPGESIESDKAF 217 Query: 233 --DSDVWDVQEEGKEIQIIKAGVIVNKDGEG 261 D + + +E Q+ AG K G Sbjct: 218 NIDEVIKKLSDEKNPAQVTGAGESTPKGKSG 248 Score = 44.1 bits (103), Expect = 0.018, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 3/83 (3%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 ++ P + VL++K D+ +T +++ F E + F + Sbjct: 265 PPAPQQKPEPPPIPMVKVLVAKSDIKPNTEITADLIR-EEFEEATLPKQF--AGGALGDL 321 Query: 91 QELDGVLVRVPILKGDPIRLEKL 113 E G +R + KG + + Sbjct: 322 NEALGQFLRTGVAKGQWVTPGMV 344 >gi|254245568|ref|ZP_04938889.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184] gi|124870344|gb|EAY62060.1| Flp pilus assembly CpaB [Burkholderia cenocepacia PC184] Length = 309 Score = 100 bits (249), Expect = 2e-19, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 93/248 (37%), Gaps = 38/248 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K+ + I ++ + + A ++ SP Q +T + ++I+ L G + Sbjct: 7 KIIAGLLIAIAVLLGIYAWVLGRSASSPPPAQPRTAVTA-----VPIVIATRTLPGGQPI 61 Query: 62 TPNILEWVA--FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + L+ + P G +D L G + + P+ + LV Sbjct: 62 PADALKVQSSTVPA---PAGAFNDPAL------LVGRMPIRDVPASTPVVADALVS---- 108 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 GL+ + G+RA + + ++AVG ++P + VDV + + + ++ Sbjct: 109 GLAEDVQPGERAVAVRVDETNAVGNRLRPGNFVDVFLNLKREVGTTMLDGEVSQTQARLL 168 Query: 171 LSNIRVIAIDHNIDSDE---------RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 LS +RV++ + + A L + Q AL ++ +L+ LR Sbjct: 169 LSKVRVLSFGDATAERDSGNNNGGNGQPTGARIAVLAVPTAQVDALTLGEASGRLTFALR 228 Query: 222 SIADLNPS 229 + D + Sbjct: 229 NPRDDELA 236 >gi|207724790|ref|YP_002255187.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] gi|206590015|emb|CAQ36976.1| pilus assembly protein cpab [Ralstonia solanacearum MolK2] Length = 311 Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 83/241 (34%), Gaps = 29/241 (12%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 ++ G +A + EN V+++ L G +T + + + P Sbjct: 18 VILGAVAWKSAHRPPAPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN-- 75 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 D ++ G PI G P+ +L + GL+ + G+RA + + Sbjct: 76 PADAFADA------GKVVGREPITPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITV 125 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNI----DSDERV 189 VG + P D+VDV +V ++ ++L ++RV+A + Sbjct: 126 DEVVGVGNRVMPGDYVDVFLVLRKDGQEIDDSKARLLLPHLRVLAFGPLAINEGPQTQPE 185 Query: 190 LVGSTAT----------LELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 +T T L + L A +L L LR+ +D + D + Sbjct: 186 SGANTVTRRVDQAKTAVLAVPVESVSQLAIAHQSGRLLLALRNPSDDAEPTVRPQDAQAL 245 Query: 240 Q 240 Sbjct: 246 A 246 >gi|331014709|gb|EGH94765.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 357 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47 L+ V+ + AL+AG + + + P V V E PA+ N Sbjct: 44 TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEEALRHN 103 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T L + G + + L G + G Sbjct: 104 VVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213 Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207 + VV+ +R++ + NI +DER + T T+ + L Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + A L L +RS + N S+ + Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|255020087|ref|ZP_05292158.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] gi|254970449|gb|EET27940.1| Flp pilus assembly protein CpaB [Acidithiobacillus caldus ATCC 51756] Length = 419 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 39/160 (24%), Positives = 67/160 (41%), Gaps = 11/160 (6%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLV-----SPHHVQTEEVITENPAKFINVLISKGDLA 56 K R +G + A++AG+ A L S E+ I ++ D+A Sbjct: 17 KPARAIGGWLILAVAILAGLGATYLAVHTLRSREEAALAELRASQKNSTIKAVVPVQDIA 76 Query: 57 VGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G ++ +++ + P + I P + G V VP+L+G PI L Sbjct: 77 PGTILDLSMVAARSIPADTAPSDVIT----PETFDQYAGHRVNVPLLQGRPILASYLS-- 130 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 G L+ ++ K A T + S + G+++P DHVDV+ Sbjct: 131 GRRTLADIVDPDKLAMTFTVDNVSTLDGLLQPGDHVDVLW 170 >gi|28871965|ref|NP_794584.1| hypothetical protein PSPTO_4850 [Pseudomonas syringae pv. tomato str. DC3000] gi|28855218|gb|AAO58279.1| conserved protein of unknown function [Pseudomonas syringae pv. tomato str. DC3000] Length = 357 Score = 99 bits (248), Expect = 3e-19, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47 L+ V+ + AL+AG + + + P V V E PA+ N Sbjct: 44 TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPVTPPVEEALRHN 103 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T L + G + + L G + G Sbjct: 104 VVVLARDIPAYTPITAEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213 Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207 + VV+ +R++ + NI +DER + T T+ + L Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + A L L +RS + N S+ + Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|302185188|ref|ZP_07261861.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae 642] Length = 319 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 46/260 (17%), Positives = 90/260 (34%), Gaps = 47/260 (18%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT-----------EEVITENPAKFIN------ 47 L+ V+ + AL+AG + + + P T E I P + Sbjct: 6 TLVLAVLFLLGALIAGYLGIAVSKPAEAPTVVIPPSEPVTTETAIQTPPTPPVEDALRHN 65 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T + L + G A+ ++ G + G Sbjct: 66 VVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTLTAGSW 117 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT- 166 + G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 118 LTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPNR 175 Query: 167 -VTVVLSNIRVIAID------------HNIDSDERVLV------GSTATLELTPMQAKAL 207 VV+ +R++ + +I++DER+ T T+ + L Sbjct: 176 SSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRIHARTVTVAVPQTLVARL 235 Query: 208 VAAQSVAKLSLVLRSIADLN 227 + A L L +RS + N Sbjct: 236 MLASQTGVLRLAVRSADEGN 255 >gi|92113781|ref|YP_573709.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043] gi|91796871|gb|ABE59010.1| Flp pilus assembly CpaB [Chromohalobacter salexigens DSM 3043] Length = 342 Score = 99.6 bits (247), Expect = 4e-19, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 87/237 (36%), Gaps = 20/237 (8%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQ-----TEEVITENPAKFINVLISKGD 54 M L + V V AL G RL E TE P V+++ Sbjct: 1 MSPKTLKIVAVGLVIVALALGFTGWRLTQQAMPPSVTESAVESATETPVMRHPVVVATRH 60 Query: 55 LAVGMVVTPNIL--EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 LA G + + + P V D + L+G ++ P+ G+ IR + Sbjct: 61 LAAGTRLGADEVTQAATQTPRLAVVDFPNAVPRSFAKREALEGRVLTRPVDAGEAIREDD 120 Query: 113 LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVT 168 L+S +P G RA + + GG I P D VDV+ S R+ Sbjct: 121 FAL--GSVLASQVPAGYRALAIGVDDVVGGGGFIAPGDRVDVLFQAQAASSGDRRETLAR 178 Query: 169 VVLSNIRVIAIDHNI------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 +L ++ V+ ++ D + TA + +T QA L+ A+S +L L Sbjct: 179 RLLDDVLVLGYGDDLRSRAENDDNGGRNGARTAVVAVTDAQAPKLLLAESTGRLRLA 235 >gi|116052339|ref|YP_792650.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] gi|115587560|gb|ABJ13575.1| putative pilus assembly protein [Pseudomonas aeruginosa UCBPP-PA14] Length = 303 Score = 99.2 bits (246), Expect = 5e-19, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGKDDLSVERL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|221066740|ref|ZP_03542845.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220711763|gb|EED67131.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 352 Score = 99.2 bits (246), Expect = 6e-19, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 101/280 (36%), Gaps = 61/280 (21%) Query: 2 KLTRLMGIVVSGVFALVAGIIA---MRLVSPHHVQ--------TEEVITENPAKFINVLI 50 K+ + +V++ A++A I+ R V+P + E PA +V++ Sbjct: 5 KILAGLLVVLAIALAIMAWIMGRQPQRAVAPAPSSINAIDTNISAEASKPRPAPMHDVVV 64 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + +A G +T L+ V+ V DG + + + G + P+ Sbjct: 65 TAKPVAAGQKLTAEDLKLVS-KTAAVADGVL-------SAEAAVGRTTLTALAADAPLLE 116 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------- 163 ++L+ GLS + G+RA ++ + A G ++P D VDV Sbjct: 117 QQLIS----GLSLQIEPGQRALSIAVKEPMAAGNHVRPGDFVDVYFTLDSKSNAADDKLN 172 Query: 164 -KPTVTVVLSNIRVIAID-----------------------------HNIDSDERVLV-G 192 ++L+ RV+A N +D+R Sbjct: 173 VDTQTRLLLARSRVLAYGASNVEVPPPTAAQRLKAQQEEEAGNKGQRRNTGNDQRSQQSA 232 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 +TA L + + L A+ +L+L LR DL+ + Sbjct: 233 NTAVLAVPLDDVERLTLAEKYGQLTLALRHPDDLSVPEAA 272 >gi|330963439|gb|EGH63699.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. actinidiae str. M302091] Length = 357 Score = 98.8 bits (245), Expect = 6e-19, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47 L+ V+ + AL+AG + + + P V V E PA+ N Sbjct: 44 TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEEALRHN 103 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T L + G + + + L G + G Sbjct: 104 VVVLARDIPAYTPITAEDLVIERL--KVAPPGSFERI------EILVGRSSWRTLTAGTW 155 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 156 PSESSFDAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213 Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207 + VV+ +R++ I NI +DER + T T+ + L Sbjct: 214 SSQVVVPALRILGIGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + A L L +RS + N + + Sbjct: 274 MLASQTGILRLAVRSAEEGNLQDYWAGETGSRDAAER 310 >gi|73539230|ref|YP_299597.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] gi|72122567|gb|AAZ64753.1| Flp pilus assembly CpaB [Ralstonia eutropha JMP134] Length = 318 Score = 98.8 bits (245), Expect = 7e-19, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 82/214 (38%), Gaps = 25/214 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 + V A V+++ + G + + L+ P E G +V Sbjct: 25 WQVGRQPEPPPVSRAAAAVPHPVVVTARAVEAGKPLPADALKVEMLPIE--PTGAYAEVT 82 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 + + G + V I P+ +L+ GL++ +P+G+RA + + VG Sbjct: 83 R------VAGQVPLVNIGANVPVLESQLL----AGLAAQIPEGERAVAIAVDEVIGVGNQ 132 Query: 146 IKPNDHVDVVMVRSLSERK---PTVTVVLSNIRVIAIDHNIDSDERVLV----------G 192 ++P D+VDV +V ++ ++L +RV+A ++ + Sbjct: 133 VQPGDYVDVFLVLRRDSQEIGASQARMLLPRLRVLAYGSGAVNEPQKQQPEQMMTRREGA 192 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 TA L + Q L AQ +L + LR+ D Sbjct: 193 KTAVLSVPLEQVSKLAMAQHSGRLLMALRNPHDE 226 >gi|313106824|ref|ZP_07793036.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] gi|310879538|gb|EFQ38132.1| putative pilus assembly protein [Pseudomonas aeruginosa 39016] Length = 299 Score = 98.4 bits (244), Expect = 8e-19, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 50 ERKPVLVASRDLPALAVIGKDDLSVERL--RTAPVGSYDRP------EALLGKRVWVAVP 101 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 102 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 159 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 160 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 219 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 220 SQAGSLRLAIRS 231 >gi|66047617|ref|YP_237458.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a] gi|63258324|gb|AAY39420.1| Flp pilus assembly CpaB [Pseudomonas syringae pv. syringae B728a] gi|330969408|gb|EGH69474.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aceris str. M302273PT] Length = 319 Score = 98.4 bits (244), Expect = 9e-19, Method: Composition-based stats. Identities = 43/282 (15%), Positives = 98/282 (34%), Gaps = 50/282 (17%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46 ++ + +V++ +F L A I A ++ P++ + Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAAVIPPSEPVTTETAIQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + + G + P D+VDV++ + Sbjct: 113 TAGSWLTESSFDTGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202 S + VV+ +R++ + +I++DER+ + T T+ + Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N ++ + + Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQDYWANEAGGLDAAER 272 >gi|317122041|ref|YP_004102044.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] gi|315592021|gb|ADU51317.1| Flp pilus assembly protein CpaB [Thermaerobacter marianensis DSM 12885] Length = 284 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 83/223 (37%), Gaps = 19/223 (8%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 V S AL+AG A L + + V+++ L + + P ++ Sbjct: 9 VASLGVALLAGTSAYVLYL------------DATASLPVVVATQALQAPLKIEPGMVAVS 56 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P V + D + G ++R + G+P+ + GLS L +G+ Sbjct: 57 HVPAAAVHPEAVSDPA------AVVGRVLRRDVEAGEPLLAADVAAGQGAGLSLYLEEGQ 110 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 +A + + +GG ++P D VDV+ V +L N+ V+ + Sbjct: 111 QAFFIPARLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVRDEEGRRWEE 169 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + ++ QA+ L A + ++ L L A + S+ Sbjct: 170 GRPMGVLVAVSRDQAERLAYALTYGRVFLALAPAAARSGGSAG 212 >gi|313902408|ref|ZP_07835811.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] gi|313467339|gb|EFR62850.1| Flp pilus assembly protein CpaB [Thermaerobacter subterraneus DSM 13965] Length = 302 Score = 98.0 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 81/207 (39%), Gaps = 19/207 (9%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 S AL+AG A +I + + V+++ L + V +++ V Sbjct: 9 AASLGVALLAGTTAY------------LIYLDATASLPVVVATRPLRAPLNVEADMVSVV 56 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P V + D + + G ++R + G+P+ +V GLS+ L + + Sbjct: 57 PLPAAAVHPRAVGDPSR------VIGHVLRRDVEAGEPLLEADVVAGEGAGLSAFLEEHQ 110 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 +A + + +GG ++P D VDV+ V +L N+ V+ + Sbjct: 111 QAFFIPTRLEQGLGGAVEPGDRVDVIFVG-GEGPGAVARTLLENLPVLQVRDEEGRRYED 169 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKL 216 + +TP +A+ L A + ++ Sbjct: 170 GRPLGVLVGVTPAEAERLAYALTYGRV 196 >gi|126733572|ref|ZP_01749319.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2] gi|126716438|gb|EBA13302.1| Flp pilus assembly CpaB [Roseobacter sp. CCS2] Length = 258 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 95/230 (41%), Gaps = 16/230 (6%) Query: 14 VFALVAGIIAMRLVSPHH--VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 A A + + + ++ E + + +++ DL G ++T + ++ + + Sbjct: 2 GLAGFAVYMVNQYMDTQASALEQERQRSATAIRTVDIYAPSRDLTYGELLTADDVQIIKY 61 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKR 130 +++ +G + +VR+P+ +PI K+ + G G+++LL G R Sbjct: 62 ARDHLPEGVFATEEELFPEGLNTPRVVRLPMQVNEPILTAKVTEAGAPQGITALLDSGMR 121 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190 A + SI+ A ++P D +D+ + + + +V S + +I+++ Sbjct: 122 AFPLPDSITRAFASELRPTDLIDLYWIGRVGNGPSSSRLVKSRMEIISLE---------- 171 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS-SEDSDVWDV 239 + ++++ L + LSL DL + ++++ DV Sbjct: 172 --PSVVIQVSQEDFADLQVLSAAGSLSLTPVGRDDLEAGDLTIETNIRDV 219 >gi|116694139|ref|YP_728350.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] gi|113528638|emb|CAJ94985.1| flp pilus assembly protein CpaB [Ralstonia eutropha H16] Length = 317 Score = 97.7 bits (242), Expect = 1e-18, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 82/215 (38%), Gaps = 25/215 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 + + V+++ + G + L+ P + G +V Sbjct: 25 WQVGRQPAQAPAASTSAKPLHAVVVTTQAVEAGKPLAAEALKVEMLPID--PTGAYSEVA 82 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 + + G + V + P+ +L+ GL++ + +G+RA + + VG Sbjct: 83 R------VTGQVPLVALGANVPVLESQLL----AGLATQVREGERAVAVSVDEVIGVGNQ 132 Query: 146 IKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAID-------HNIDSDE---RVLVG 192 ++P D+VDV +V ++ + ++LS +RV+A N ++ R Sbjct: 133 VQPGDYVDVFLVLRRDQQEIPESQARMLLSRLRVLAYGVASVNRPQNAKPEQMMARQEGA 192 Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 TA L + Q L AQ +L L LR+ D Sbjct: 193 KTAVLSVPLEQVSRLAMAQQSGRLLLALRNPQDEA 227 >gi|330873640|gb|EGH07789.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 319 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 92/277 (33%), Gaps = 47/277 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47 L+ V+ + AL+AG + + + P V V E PA+ N Sbjct: 6 TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPVAIEQPAQTPATPPVEEALRHN 65 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T L + G + + + L G + G Sbjct: 66 VVVLARDIPAYTPITAEDLIIERL--KVAPPGSFERI------ESLVGRSSWRTLTAGTW 117 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 118 PSESSFDAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 175 Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207 + VV+ +RV+ + NI +DER + T T+ + L Sbjct: 176 SSQVVVPALRVLGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 235 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + A L L +RS + N + + Sbjct: 236 MLASQTGILRLAVRSAEEDNLQDYWAGETGSRDAAER 272 >gi|296391004|ref|ZP_06880479.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PAb1] Length = 303 Score = 97.7 bits (242), Expect = 2e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|213968017|ref|ZP_03396163.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] gi|301383667|ref|ZP_07232085.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato Max13] gi|302059964|ref|ZP_07251505.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato K40] gi|302131630|ref|ZP_07257620.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tomato NCPPB 1108] gi|213927360|gb|EEB60909.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1] Length = 357 Score = 97.3 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 49/277 (17%), Positives = 91/277 (32%), Gaps = 47/277 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQT------EEVITENPAKFI-----------N 47 L+ V+ + AL+AG + + + P V E PA+ N Sbjct: 44 TLVLAVLFLLGALIAGYLGIAVSKPAEVPAVVNTSAPPAAIEQPAQTPVTPPVEEALRHN 103 Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V++ D+ +T L + G + + L G + G Sbjct: 104 VVVLARDIPAYTPITVEDLAIERL--KIAPPGSFERIDS------LVGRSSWRTLTAGTW 155 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 G L+ ++ +RA + + + G + P D+VDV++ P Sbjct: 156 PSESSFDAGGT--LARMIRPYERALALQVDEVTGASGQLSPGDYVDVLLYLPEDASNPSR 213 Query: 166 TVTVVLSNIRVIAID------------HNIDSDER------VLVGSTATLELTPMQAKAL 207 + VV+ +R++ + NI +DER + T T+ + L Sbjct: 214 SSQVVVPALRILGVGGLLGPDRDGKPVQNISADERFKQEQQRINARTVTVAVPEALLARL 273 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + A L L +RS + N S+ + Sbjct: 274 MLASQTGILRLAVRSAEESNLQDYWASETGSRDAAER 310 >gi|160897516|ref|YP_001563098.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1] gi|160363100|gb|ABX34713.1| Flp pilus assembly protein CpaB [Delftia acidovorans SPH-1] Length = 363 Score = 96.9 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 93/268 (34%), Gaps = 50/268 (18%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFIN---VLISKGDLAVG 58 K+ + + ++ V A +A ++ + P + + + + V++ +A G Sbjct: 20 KILAGLLVGLAIVLAGLAWLLGSQPARPVAQPSPAASAQPAPEPVPQHAVVVVAQAIAAG 79 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + ++ P V F A ++ G + + G P+ ++L+ Sbjct: 80 QRIGSEDVKLAQLPA-PVPGSF-------AATDDVLGRTTLMALTPGTPLFEQQLLS--- 128 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP----TVTVVLSNI 174 GL+ L G+RA + I A G ++P D VDV + ++L+ Sbjct: 129 -GLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLDGKSDQAPVDAQTRLLLARS 187 Query: 175 RVIA-------------IDHNIDSD------------------ERVLVGSTATLELTPMQ 203 RV+A + D +R +A L + Sbjct: 188 RVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQTGQRPENVQSAVLAVPLDD 247 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSS 231 + L A+ +L+L LR+ DL+ Sbjct: 248 VERLTLAEKFGQLTLALRNPDDLSVPDP 275 >gi|294146465|ref|YP_003559131.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] gi|292676882|dbj|BAI98399.1| Flp pilus assembly protein CpaB [Sphingobium japonicum UT26S] Length = 302 Score = 96.9 bits (240), Expect = 3e-18, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 84/242 (34%), Gaps = 35/242 (14%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMVVTPN 64 + I V A + +R + T + VL+ + + G +T Sbjct: 9 LTIAVGLTSASAFLALGVRELRNASAATVQGQAAPVRVAAPVLLVRAARAIRTGETITAA 68 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 ++ G E+ G + I I + + L+ Sbjct: 69 MIR--------NAPGDPTRYPYAATSAEVVGKVATRDIGLHALIARDAVGMESK--LAIR 118 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--------RSLSERKPTVTVVLSNIRV 176 +P G RA ++D + AV G+I+P D VDV +V + + +L ++V Sbjct: 119 VPMGMRAISIDTTAEIAVAGLIRPGDRVDVQVVYPGADAISGARGSGRSRAQALLQMVQV 178 Query: 177 IAIDHNIDSDER---------------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 +A+ + ++ T TL LTP Q L A+++ L+L LR Sbjct: 179 LAVGEVVVGTQQASGANGGVEGALSSPPPPARTVTLALTPEQVSILSLAKNIGALTLSLR 238 Query: 222 SI 223 + Sbjct: 239 NP 240 >gi|257790303|ref|YP_003180909.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325830168|ref|ZP_08163625.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] gi|257474200|gb|ACV54520.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|325487635|gb|EGC90073.1| Flp pilus assembly protein CpaB [Eggerthella sp. HGA1] Length = 215 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 16/222 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 MK +R I ++ A A + A + + V ++K D+A G Sbjct: 1 MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + +E + + + + ++ G IL G+ + + D G+ Sbjct: 61 ESVDASAVETRLWVADLLPAEAFR------SSDDVVGKKASSTILAGEVLSERRFRDAGS 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G A ++ AVGG + VDV S V+ S + V+A Sbjct: 115 R---LDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYATGGTS-----TDVLASGVLVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + S T+ + P + +VAA +L L Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTL 208 >gi|330938338|gb|EGH41970.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. pisi str. 1704B] Length = 319 Score = 96.5 bits (239), Expect = 3e-18, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 91/268 (33%), Gaps = 50/268 (18%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46 ++ + +V++ +F L A I A ++ + P++ + Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + A+ ++ G + Sbjct: 61 ALRHNVVVLAKDIPANTAITADDLTIERL--------KVAPPRSFEAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + + G + P D+VDV++ + Sbjct: 113 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 161 SERKPTVTVVLSNIRVIAI------------------DHNIDSDERVLVGSTATLELTPM 202 S + VV+ +R++ + D + +++ + T T+ L Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDLNADERLKQEQQRINARTVTVALPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230 L+ A L L +RS + N Sbjct: 231 LVARLMLASQTGVLRLAVRSADEGNLQD 258 >gi|107100111|ref|ZP_01364029.1| hypothetical protein PaerPA_01001132 [Pseudomonas aeruginosa PACS2] gi|254244884|ref|ZP_04938206.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192] gi|126198262|gb|EAZ62325.1| hypothetical protein PA2G_05757 [Pseudomonas aeruginosa 2192] Length = 303 Score = 96.1 bits (238), Expect = 4e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAAALEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|254239025|ref|ZP_04932348.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719] gi|126170956|gb|EAZ56467.1| hypothetical protein PACG_05202 [Pseudomonas aeruginosa C3719] Length = 303 Score = 96.1 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|218893397|ref|YP_002442266.1| RcpC [Pseudomonas aeruginosa LESB58] gi|218773625|emb|CAW29439.1| RcpC [Pseudomonas aeruginosa LESB58] Length = 303 Score = 96.1 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGKDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|15599501|ref|NP_252995.1| RcpC [Pseudomonas aeruginosa PAO1] gi|9950527|gb|AAG07693.1|AE004846_10 RcpC [Pseudomonas aeruginosa PAO1] Length = 303 Score = 95.7 bits (237), Expect = 5e-18, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 23/192 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ DL V+ + L G D + L G V V + Sbjct: 54 ERKPVLVASRDLPALAVIGRDDLSVELL--RTAPVGSYDRP------EALLGKRVWVAVP 105 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSL 160 G + L G L+ + +RA + + GG + P D+VDV++ Sbjct: 106 AGSILSAATLEPGGP--LARTIRPDERAMAIAVDEVVGGGGFVLPGDYVDVMLFVRDERD 163 Query: 161 SERKPTVTVVLSNIRVI------AIDH----NIDSDERVLVGSTATLELTPMQAKALVAA 210 E P +VL +RV+ A+ + ++ TA L + L+ A Sbjct: 164 GESTPLAQLVLPGVRVLTYGERIAVGSDGQDRSNQEKDPRPPRTAVLAVPEDGVARLMLA 223 Query: 211 QSVAKLSLVLRS 222 L L +RS Sbjct: 224 SQAGSLRLAIRS 235 >gi|317489752|ref|ZP_07948251.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911098|gb|EFV32708.1| SAF domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 215 Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 78/222 (35%), Gaps = 16/222 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENP--AKFINVLISKGDLAVG 58 MK +R I ++ A A + A + + V ++K D+A G Sbjct: 1 MKRSRTTIIGIACGLACAACVFAYAQGVRGEADAARAEALARYGGEQLEVCVAKRDIAAG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + +E + + + + ++ G IL G+ + + D G+ Sbjct: 61 ESVDASAVETRLWVADLLPAEAFR------SSGDVVGKKASSTILAGEVLSERRFRDAGS 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G A ++ AVGG + VDV S V+ S + V+A Sbjct: 115 R---LDVPEGLTALSVPAKDVQAVGGAVAAGSRVDVYATGGTS-----TDVLASGVLVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + S T+ + P + +VAA +L L Sbjct: 167 TSASAQESTTDAKVSWITVAVAPESVQEIVAAAQKTELYFTL 208 >gi|110833079|ref|YP_691938.1| hypothetical protein ABO_0218 [Alcanivorax borkumensis SK2] gi|110646190|emb|CAL15666.1| conserved hypothetical protein [Alcanivorax borkumensis SK2] Length = 298 Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 103/261 (39%), Gaps = 30/261 (11%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVIT----------ENPAKFINVLISKG 53 R + ++ + + ++VA I+A+ ++ + ++ Sbjct: 3 ARWLYMLPALILSVVAVILALVGLARDPSPAKPERAGADEALAQQRAADKPKYTYWVATR 62 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +L +G +V + + + A ++ G + + G+ + L Sbjct: 63 ELNIGSIVADDDFQKIDVSAPL--------SSALQADAQVVGQRLFQHVRNGEILSQVHL 114 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLS 172 L+ +P RA +DI +SAVGG+++P D VDV++ R + +PT ++L Sbjct: 115 EAGNR--LAQSVPAQFRAFAIDIDNASAVGGLLEPGDLVDVLVHFRKGQDEQPTSMILLK 172 Query: 173 NIRVIAI-------DHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVLRSIA 224 I V+A+ D + E+ + + P +A L+ A S +L L + + Sbjct: 173 AIEVLAVKGQLQDADKTDEEKEKSRSRNATAVLAIPREALPKLLLADSNGELRLAM-AGE 231 Query: 225 DLNPSSSEDSDVWDVQEEGKE 245 D+ +E + V GKE Sbjct: 232 DIGSEQNESAGGGAVGLSGKE 252 >gi|149927034|ref|ZP_01915292.1| Flp pilus assembly CpaB [Limnobacter sp. MED105] gi|149824255|gb|EDM83475.1| Flp pilus assembly CpaB [Limnobacter sp. MED105] Length = 321 Score = 95.7 bits (237), Expect = 6e-18, Method: Composition-based stats. Identities = 45/247 (18%), Positives = 96/247 (38%), Gaps = 30/247 (12%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + M +S +V+ + + V++S ++ G VTP +L+ F G Sbjct: 19 FMVMAFLSGQNVKKGGEAIKTELERFPVVVSTVEIQFGKPVTPEMLKVEKF--AIAPSGA 76 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 D+ ++ G I KG P+ + +G +++ + +G RA + + ++ Sbjct: 77 FTDI------GDVIGKKPLFNIGKGLPVTNQYF---ESGAVAAEVREGYRAFALRLDENN 127 Query: 141 AVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNI-------------D 184 IK D+VDV + + R + +++ +RV+++ + D Sbjct: 128 VATAKIKAGDYVDVFSIFKSNSRDIEETISRLIMPKLRVLSVGSQLVNAPETTNAANDKD 187 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 + R + +E+ L AQ+ +L +VLRS + D + E Sbjct: 188 VNNRPVRLKAMMVEVPTGDINTLAIAQTQGELFVVLRSP---DEEELPDMSKYPQPEPIL 244 Query: 245 EIQIIKA 251 + ++K Sbjct: 245 KPALVKG 251 >gi|283778868|ref|YP_003369623.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] gi|283437321|gb|ADB15763.1| Flp pilus assembly protein CpaB [Pirellula staleyi DSM 6068] Length = 330 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 60/259 (23%), Positives = 100/259 (38%), Gaps = 25/259 (9%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITEN----------PAKFINVLISKGDLAVGM 59 V GV A+V G++A +V + V P I ++I+K +L Sbjct: 9 VTFGVMAIVLGLVAAYIVRQSLQKPPVVAKVVAPVPPAPAPIPDPGIRIVIAKHNLPKHT 68 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +VT + +E V V F G + + G +R E L+ G G Sbjct: 69 LVTADDVEVV-----FVPKTFPKLETIMKGPATAQGRITNRALPAGQVMREEYLLGIGEG 123 Query: 120 --GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE---RKPTVTVVLSNI 174 L+ +P G RA T++ A G + D VD+ M + + ++ ++ Sbjct: 124 LPPLAERIPAGYRAVTIEAMNVDAGGKRLSEGDLVDISMTVEGTHPDLGEVLTRTLMKDV 183 Query: 175 RVI--AIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 V+ A + I D+R G + T+ + P A L+ AQ LS+ L S A+ Sbjct: 184 MVVDAAAGNPIVLDKRRDQPRSGDSITVAVLPADANKLMVAQKTGVLSVSLCSAAEAPAD 243 Query: 230 SSEDSDVWDVQEEGKEIQI 248 + DS KE+ + Sbjct: 244 DTVDSITRRQLLGLKEVPV 262 >gi|317403506|gb|EFV84009.1| flp pilus assembly protein CpaB [Achromobacter xylosoxidans C54] Length = 226 Score = 95.3 bits (236), Expect = 7e-18, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 75/211 (35%), Gaps = 24/211 (11%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 E PAK V+++ + G + +L+ + + ++ Sbjct: 21 QASAPAEPPAKRYPVVVAAAAIPAGTRIDGARMLKVDQW--------QVALSGSYSSPAP 72 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 L G RV I GDP+ L GL L G+RA + + G I P D V Sbjct: 73 LQGAYARVDIAAGDPLLPSMLAQ----GLGRQLKPGERAVAIAVDEVVGGGNRIAPGDLV 128 Query: 153 DV--VMVRSLSERKPTVTVVLSNIRVIAI---------DHNIDSDERVLVGSTATLELTP 201 DV ++ + + + ++ S +RV+A D TA L + Sbjct: 129 DVFFLLEKGVEIQAGQARLLQSRVRVLAYGTASVDGPEDKGTLPGPPGQPARTAVLAVPV 188 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 Q L+ A +L L LR + D ++ Sbjct: 189 EQVSELLLAGRSGRLQLALRPVGDDGGPDTQ 219 >gi|307295324|ref|ZP_07575163.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] gi|306878827|gb|EFN10046.1| Flp pilus assembly protein CpaB [Sphingobium chlorophenolicum L-1] Length = 301 Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 95/244 (38%), Gaps = 31/244 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIA--MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 +K +G+ ++ A +A + + + + A + ++ + + G Sbjct: 5 LKAKLTIGVGLTAATAFLALGVRELRKASAATGENRVTAPAKVAAPTVLLVQAARAIRTG 64 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +T +++ A G Q E+ G + I I + + N Sbjct: 65 ETITADMIRNAA--------GDPARFPQAATSAEVVGKVATRDIAMRALIARDAVGVESN 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVV 170 L+ +P G RA ++D + AV G+++P D VDV +V ++ + + Sbjct: 117 --LAMRVPMGMRAVSIDTTAEIAVAGLVRPGDRVDVQVVYPGADAISGARGAGRSRAQAL 174 Query: 171 LSNIRVIAIDHNIDSDER-----------VLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 L ++V+A+ + + L T TL LTP Q AL A+++ L+L Sbjct: 175 LQMVQVLAVGEVVVGARQASGVEGALASPPLPARTVTLALTPEQVSALSLAKNIGALTLS 234 Query: 220 LRSI 223 LR+ Sbjct: 235 LRNP 238 >gi|331012567|gb|EGH92623.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 91/275 (33%), Gaps = 47/275 (17%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49 + V+ + AL+AG + + + P P NV+ Sbjct: 8 VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67 Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + D+ +T L + G + + +L G + G + Sbjct: 68 VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119 Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167 G L+ ++ +RA + + G + P D+VDV++ S + Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177 Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209 VV+ +RV+ + +I++DER+ + T T+ ++ L+ Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVSEAVLARLML 237 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N + S+ + Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|330892475|gb|EGH25136.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. mori str. 301020] Length = 319 Score = 95.0 bits (235), Expect = 9e-18, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202 S + VV+ +RV+ + +I++DER+ + T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|320322729|gb|EFW78822.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. B076] gi|320330486|gb|EFW86465.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. race 4] gi|330873796|gb|EGH07945.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. glycinea str. race 4] Length = 319 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202 S + VV+ +RV+ + +I++DER+ + T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|289625313|ref|ZP_06458267.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647838|ref|ZP_06479181.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 2250] gi|330867147|gb|EGH01856.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330871035|gb|EGH05744.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 319 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 91/282 (32%), Gaps = 48/282 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46 M M + V + AL+AG + + + P P Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T L + G + + +L G + Sbjct: 61 ALRHNVVVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + G + P D+VDV++ Sbjct: 113 TAGTWLSENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDT 170 Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202 S + VV+ +RV+ + +I++DER+ + T T+ + Sbjct: 171 SNLNRSSQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 L+ A L L +RS + N + S+ + Sbjct: 231 LLARLMLASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|258515698|ref|YP_003191920.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] gi|257779403|gb|ACV63297.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] Length = 247 Score = 94.6 bits (234), Expect = 1e-17, Method: Composition-based stats. Identities = 49/246 (19%), Positives = 90/246 (36%), Gaps = 37/246 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K + + ++ + A+ AG + M+ + + + V+++K ++ + Sbjct: 6 KKSSSYLLFITLIAAVAAGFLGMQTIRKYTA------------VLPVVVAKVEIPAYTPI 53 Query: 62 TPN----ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 T +L P+ + G Q L G + R I G P+ + L G Sbjct: 54 TEENEKEMLAVENIPKAAIKQGMF------PNSQNLIGKVTRTVIPAGYPVSKDFLAIEG 107 Query: 118 NGGL-----SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS---LSERKPTVTV 169 G L S RA + + +A+ G I P D VDVV ++P Sbjct: 108 PGSLLTTQISQFKDPKLRATPVTVQGVNALDGKIMPGDRVDVVGNMKLPMGGLQQPVSQT 167 Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNP 228 + + VIA+ + L LTP QA+ + A++ + L L D N Sbjct: 168 IGVQVPVIAV------TGEPNKPTGVILGLTPQQAQDVGFAETAGTIKLSLNPYQPDTNA 221 Query: 229 SSSEDS 234 + + + Sbjct: 222 ARTTPT 227 >gi|329943872|ref|ZP_08292143.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] gi|328531578|gb|EGF58414.1| Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] Length = 362 Score = 94.2 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 45/254 (17%), Positives = 85/254 (33%), Gaps = 26/254 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + GI++ F +V ++ LV + + V+ D+ Sbjct: 114 MNPRQRKGIIL-IFFTIVGALVTFGLV----LSYVNSVASQVGPMTTVVTLTRDVESLTS 168 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +E P+ +G + + +E G++ KGD ++ L Sbjct: 169 LTEADVEVKEVPKRWAPNGALH------SFKETSGLVTAGTYHKGDMLQSGMLESPPG-- 220 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-PTVTVVLSNIRVIAI 179 L G R + + + V G I + VD++ K VV+ N ++ + Sbjct: 221 ----LQSGYREVAIIVDAETGVAGKISSGETVDIIATVEDPNTKAQQANVVVENAVILDV 276 Query: 180 DHNIDSDERVLVGS-------TATLELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSS 231 D E+ G+ T L+ A + A+S A K+ L LR D + Sbjct: 277 GVTTDIKEKDESGNFTDEKGVPVTFALSTQDALKVAYAESFAVKVRLALRGEGDDSALGP 336 Query: 232 EDSDVWDVQEEGKE 245 + + Sbjct: 337 DSTQYGGGSAPAPA 350 >gi|330989177|gb|EGH87280.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. lachrymans str. M301315] Length = 319 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 89/275 (32%), Gaps = 47/275 (17%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49 + V+ + AL+AG + + + P P NV+ Sbjct: 8 VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPVATEISTQTPPTPPVEDALRHNVV 67 Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + D+ +T L + G + + +L G + G + Sbjct: 68 VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119 Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167 G L+ ++ +RA + + G + P D+VDV++ S + Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177 Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209 VV+ +RV+ + +I++DER+ + T T+ + L+ Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPETLLARLML 237 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N S+ + Sbjct: 238 ASQTGVLRLAVRSADEGNIQDYWASEAGSRDAAER 272 >gi|298488960|ref|ZP_07006983.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156458|gb|EFH97555.1| Flp pilus assembly protein RcpC/CpaB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 319 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 47/275 (17%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49 + V+ + AL+AG + + + P P NV+ Sbjct: 8 VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67 Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + D+ +T L + G + + +L G + G + Sbjct: 68 VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119 Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167 G L+ ++ +RA + + G + P D+VDV++ S + Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177 Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209 VV+ +RV+ + +I++DER+ + T T+ + L+ Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLML 237 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N + S+ + Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWPSEAGSRDAAER 272 >gi|71737039|ref|YP_276549.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557592|gb|AAZ36803.1| Flp pilus assembly protein CpaB family [Pseudomonas syringae pv. phaseolicola 1448A] Length = 313 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/276 (16%), Positives = 91/276 (32%), Gaps = 47/276 (17%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NV 48 ++ V+ + AL+AG + + + P P NV Sbjct: 1 MVLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNV 60 Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ D+ +T L + G + + +L G + G + Sbjct: 61 VVLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWL 112 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPT 166 G L+ ++ +RA + + G + P D+VDV++ S + Sbjct: 113 SENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRS 170 Query: 167 VTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALV 208 VV+ +RV+ + +I++DER+ + T T+ + L+ Sbjct: 171 SQVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLM 230 Query: 209 AAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N + S+ + Sbjct: 231 LASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 266 >gi|257483348|ref|ZP_05637389.1| CpaB family Flp pilus assembly protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 319 Score = 93.8 bits (232), Expect = 2e-17, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 90/275 (32%), Gaps = 47/275 (17%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI-----------------NVL 49 + V+ + AL+AG + + + P P NV+ Sbjct: 8 VLAVLFLLGALIAGYLGIAVSKPAEAPAVVTPPTVPDATEISTQTPPTPPVEDALRHNVV 67 Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + D+ +T L + G + + +L G + G + Sbjct: 68 VLARDVPAYTPITAEDLTVERL--KVAPPGSFEHI------DKLVGRSTWRTLTAGTWLS 119 Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTV 167 G L+ ++ +RA + + G + P D+VDV++ S + Sbjct: 120 ENSFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGDYVDVLLYLPEDTSNLNRSS 177 Query: 168 TVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPMQAKALVA 209 VV+ +RV+ + +I++DER+ + T T+ + L+ Sbjct: 178 QVVVPALRVLGVGGLLGPDRNGKPVQDINADERLKQEQLRINARTVTVAVPEALLARLML 237 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGK 244 A L L +RS + N + S+ + Sbjct: 238 ASQTGVLRLAVRSADEGNLQNYWASEAGSRDAAER 272 >gi|152980658|ref|YP_001355007.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille] gi|151280735|gb|ABR89145.1| CpaB pilus assembly protein [Janthinobacterium sp. Marseille] Length = 317 Score = 93.4 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 73/223 (32%), Gaps = 37/223 (16%) Query: 29 PHHVQTEEVITENPAKFIN--VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 EV T N K V+ + L G +T + ++ V P + Sbjct: 29 RPPPPPVEVKTANMPKTAEYAVVAAAKKLEKGKQITADSVKLVTLP--------MTANGT 80 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMI 146 ++ G + V I + E+LV GL+ L +G+RA + + VG I Sbjct: 81 YANAGDVIGKIPAVEIAADTLVTEEQLVK----GLALKLAEGERAVAISVDEVVGVGNRI 136 Query: 147 KPNDHVDVVMVRSLSERKPT--VTVVLSNIRV-----------------IAIDHNIDSDE 187 D+VDV ++ S RV +A + + Sbjct: 137 AAGDYVDVFFTLKKGNDVDIGQSRLLASRRRVLTYGGATMGEAQASPNALANNQTAQQSQ 196 Query: 188 RVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 TA L Q L+ A +L+LVLR D + Sbjct: 197 ----ARTAVLATPIDQVNQLLLASQNGRLTLVLRHPDDTGVAD 235 >gi|260768626|ref|ZP_05877560.1| putative pilus assembly protein [Vibrio furnissii CIP 102972] gi|260616656|gb|EEX41841.1| putative pilus assembly protein [Vibrio furnissii CIP 102972] Length = 312 Score = 93.0 bits (230), Expect = 4e-17, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 86/222 (38%), Gaps = 16/222 (7%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + + + +FA+ + +++ + + P + + + DL G ++T Sbjct: 8 AKALKLSAMILFAIAVVFLVSGMLTANPSPPKNAAVSKPIEQYDAWVVVDDLTQGTLITR 67 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 ++++ + G V+ ++ G + + LV N + Sbjct: 68 DMMKPTRVTQ--------LGDSLIQNPDVALGRRVKQDVIAGAYLTSKMLVP--NRPVID 117 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSNIRVIAID 180 LP+ RA + VGG ++P DHVDV+++ ++ +T + S++ V+AI Sbjct: 118 DLPENYRAIAIRAGEVLTVGGYLQPGDHVDVMLLLKPNKESGAITSARRIASDLMVLAIG 177 Query: 181 HN---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D ER + L + A L+ A + ++ L Sbjct: 178 QQQNGTDKFEREAQAKSVVLAVHESLAPVLLLADASGEIRLA 219 >gi|148556417|ref|YP_001263999.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas wittichii RW1] gi|148501607|gb|ABQ69861.1| Flp pilus assembly protein CpaB-like protein [Sphingomonas wittichii RW1] Length = 293 Score = 92.7 bits (229), Expect = 5e-17, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 85/244 (34%), Gaps = 33/244 (13%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE--NPAKFINVLISKGDLAVGMVVTPN 64 + +V +FAL+ I+ R + + I+ + G ++P+ Sbjct: 8 ITVVAGLLFALLFVILGFRELGRPSPSRPLPVAAIVESGPPAAFAIAARRIETGETLSPD 67 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 ++ P+ + E G + PI + + L+ Sbjct: 68 LVRNGPAPKAL--------QAATASPAEAVGKVATQPIAA--GAAIPRAAIAAEDKLALR 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------RKPTVTVVLSNIRV 176 +P G RA ++D + AV G+++P D VD+ +V ++ +L + V Sbjct: 118 VPVGMRAISIDTTSEIAVAGLVRPGDRVDIQVVYPGTDAIAGLRGPGGSQAATLLQMVEV 177 Query: 177 IAIDHNI-------------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 +A+ + + + TL LTP L A++ + L LR+ Sbjct: 178 LAVGQVVIGSGPANEDKSVSSFESQPPQARNVTLALTPADVSTLSLAKARGAIYLSLRNP 237 Query: 224 ADLN 227 AD Sbjct: 238 ADRE 241 >gi|152989266|ref|YP_001350208.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7] gi|150964424|gb|ABR86449.1| Flp pilus assembly protein CpaB [Pseudomonas aeruginosa PA7] Length = 303 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 31/220 (14%) Query: 28 SPHHVQTEEVITENPA--------KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 +P VQ V + VL++ DL V+ + L G Sbjct: 30 APSTVQVPAVAPATSVVDASLEKLERKPVLVASRDLPALAVIGKDDLVVEML--RTAPAG 87 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS 139 D + L G V V + G + L G L+ + +RA + + Sbjct: 88 SYDKP------EALLGKRVWVAVPAGSILSAATLEPGGP--LARTIRADERAMAIAVDEV 139 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVT---VVLSNIRVI------AID----HNIDSD 186 GG + P D+VDV++ + + +VL +RV+ A+ ++ Sbjct: 140 IGGGGFVLPGDYVDVMLFVRDERGGESTSLAQLVLPGVRVLTYGERIAVGGDGQDRSATE 199 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 + TA L + L+ A L L +RS + Sbjct: 200 KDPRPPRTAVLAVPAEGVARLMLASQAGALRLAIRSQDEE 239 >gi|198284414|ref|YP_002220735.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667886|ref|YP_002427082.1| hypothetical protein AFE_2705 [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248935|gb|ACH84528.1| Flp pilus assembly protein CpaB [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520099|gb|ACK80685.1| conserved hypothetical protein [Acidithiobacillus ferrooxidans ATCC 23270] Length = 323 Score = 91.9 bits (227), Expect = 7e-17, Method: Composition-based stats. Identities = 54/288 (18%), Positives = 108/288 (37%), Gaps = 43/288 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAV 57 M T + I + + A+ G+ A + P V +T + P + V+++ L+ Sbjct: 1 MGNTAKIVIAILVLLAIALGVSAYLVSQPSPVVQSKTSAAAPQQPTAGVAVVVAAKTLSA 60 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G + P+ ++ + +PE G + + G + +V I G P+ L+ Sbjct: 61 GFPIPPDGVKVLHYPE--FPAGAFHETAH------VVGKVPQVNIGMGAPVMSSNLLS-- 110 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK------PTVTVVL 171 GL++ +P+G A +D++ + AVG ++P D+VDV + + ++L Sbjct: 111 --GLATQVPEGDVAMAIDVNKAIAVGDHLQPGDYVDVFTTLAGDQMTMHGGWPTQSRLLL 168 Query: 172 SNIRVIAIDHNI----------------------DSDERVLVGSTATLELTPMQAKALVA 209 +++RV+A+ + ST L++ A L Sbjct: 169 ADLRVLAVGPQTVVRHVAQGEPSAFGPAAGSAGSSNQPPREPPSTVVLQVPVASAATLAL 228 Query: 210 AQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 A L L LR+ D + E+ + + + K Sbjct: 229 ASGQGHLLLALRNPKDHTLPDTGAFPTPSPALPPAELPVAQRKAALAK 276 >gi|237798382|ref|ZP_04586843.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021234|gb|EGI01291.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. oryzae str. 1_6] Length = 318 Score = 91.9 bits (227), Expect = 8e-17, Method: Composition-based stats. Identities = 45/264 (17%), Positives = 87/264 (32%), Gaps = 47/264 (17%) Query: 1 MKLTRLMGIVVSGVF-ALVAGIIAMRLVSPHHVQTEEVITENPAKFI------------- 46 M M + V + AL+AG + + + V + Sbjct: 1 MSSRITMVLAVLFLLGALIAGYLGIVVSRQAEVPAAVTQSAPSPAEQAPQAPAPQPVEDA 60 Query: 47 ---NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 NV++ D+ +T + + + G ++++ L G + Sbjct: 61 LRHNVVVVARDIPAYTPITADDVVIERL--KVAPPGSF------DSVERLVGRSSWRTLN 112 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G + G L+ ++ +RA + + + G + P D+VDV++ Sbjct: 113 AGTWLSESSFDAGGT--LARMIRPYERALALQVDEVISASGQLSPGDYVDVLLYLPEDTL 170 Query: 164 KPT--VTVVLSNIRVIAID------------HNIDSDERVL------VGSTATLELTPMQ 203 P VV+ +R++ I NI +DER+ T T+ + Sbjct: 171 NPNRSSQVVVPALRILGIGGLLGTDHDGKPVQNISADERLRQEQLRANARTVTVAVPEAL 230 Query: 204 AKALVAAQSVAKLSLVLRSIADLN 227 L+ A L L +RS + N Sbjct: 231 VSRLMLASQTGVLRLAVRSADEGN 254 >gi|269126095|ref|YP_003299465.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183] gi|268311053|gb|ACY97427.1| Flp pilus assembly protein CpaB [Thermomonospora curvata DSM 43183] Length = 245 Score = 91.1 bits (225), Expect = 1e-16, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 85/219 (38%), Gaps = 24/219 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 RL+ IVV+ A + ++ V + +NVL++ + G +T Sbjct: 2 NRRLITIVVAVALAGLGSLMVYGYVHGADERALRGQRA-----VNVLVAAKAIPAGTAIT 56 Query: 63 ----PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 FP +V D + + ++ ++ P+ G+ IR LV RG+ Sbjct: 57 RLVADGYAVTRKFPASSVPDDVLSRIEDVDSD-----MVTGSPVRPGELIRKPLLVPRGS 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-------TVTVVL 171 + +P+GK A T++++ V G + P V V + R + + +++ Sbjct: 112 SQ-TFTVPEGKIALTVELTDPQRVAGHVVPGSKVAVFLTRRILDSNGRPRGELTETRLLM 170 Query: 172 SNIRVIAIDHNIDSDERVLV--GSTATLELTPMQAKALV 208 S I V+ I S TL +T QA+ LV Sbjct: 171 SGIDVLWIGPAPKDKSAAKTEGSSLVTLAVTQRQAEKLV 209 >gi|227811503|ref|YP_002811514.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684] gi|254687774|ref|ZP_05151630.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CNEVA-9066] gi|254739264|ref|ZP_05196966.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Western North America USA6153] gi|254745060|ref|ZP_05202737.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Kruger B] gi|254756463|ref|ZP_05208492.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Vollum] gi|227008105|gb|ACP17847.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. CDC 684] Length = 286 Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|302388996|ref|YP_003824817.1| SAF domain protein [Thermosediminibacter oceani DSM 16646] gi|302199624|gb|ADL07194.1| SAF domain protein [Thermosediminibacter oceani DSM 16646] Length = 214 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 33/228 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + + IV+S + A + R + I V+++ D+ G +T Sbjct: 6 RKTVLIVISLLLATGLTFLQYRYFKSM---------AESDRKIQVVVAAADIEAGEDIT- 55 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + P+ ++ ++ PN E +V I G I E + Sbjct: 56 GRIGLKTIPQSA----YVKGMYLPN---EKVSGYAKVNISAGSYILKEMVSTEKVP---- 104 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179 ++ G R T+ ++++S++ G I+P D VDV V E+ V+ +++ + Sbjct: 105 VVENGMRRVTIGVNLTSSLAGKIRPGDVVDVGWVPKEQEKGAGSKVIAQKVQIYDVVNKM 164 Query: 180 --DHNIDSDERV------LVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D D++ L+ S TL +TP QA + + + L LV Sbjct: 165 GEDTTKKGDKKNQYEKDMLIPSAVTLIVTPEQAVMIKYHEVIGSLFLV 212 >gi|104779899|ref|YP_606397.1| Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] gi|95108886|emb|CAK13582.1| putative Flp pilus assembly protein CpaB [Pseudomonas entomophila L48] Length = 316 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 35/220 (15%), Positives = 72/220 (32%), Gaps = 32/220 (14%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P +++ + + + +T + + + V G Sbjct: 45 PAPTPVAVPAQPPEPPRSPIVVLRKAVPANVPLTEDDVLVERL--QVVPAGAFQ------ 96 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 + ++ G P+ G + + G L+ ++ +RA + + G ++P Sbjct: 97 QLDQVLGRSSSRPLAAGSWLDDSSF--QAGGPLARMIRANERAVAVAVDDVIGAAGQLRP 154 Query: 149 NDHVDVVMVRSLSERKP--TVTVVLSNIRVIAID-----------------HNIDSDERV 189 D VDV++ P + VVL +RV+++D D++ Sbjct: 155 GDFVDVLLFLREENNNPQSSAQVVLPALRVLSVDHQTGLANDGRPAQTAEEQKARRDQQA 214 Query: 190 LVG---STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 L T L + A L+ A L L +RS + Sbjct: 215 LNSNATRTVGLAVPEALASRLMLAAQAGTLRLAVRSADEQ 254 >gi|228969250|ref|ZP_04130128.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790443|gb|EEM38166.1| hypothetical protein bthur0004_59710 [Bacillus thuringiensis serovar sotto str. T04001] Length = 286 Score = 90.7 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI + EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L +G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKEGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVIEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|228912543|ref|ZP_04076208.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL 200] gi|228847113|gb|EEM92102.1| hypothetical protein bthur0013_66020 [Bacillus thuringiensis IBL 200] Length = 286 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + +L P + + + +E+ G PI + + K+V + + Sbjct: 54 IKEEMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVKKED 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 SS+ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSSILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|89897409|ref|YP_520896.1| hypothetical protein DSY4663 [Desulfitobacterium hafniense Y51] gi|89336857|dbj|BAE86452.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 286 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 30/241 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V ++ ++P Q+ ++ +V+ ++ G +T ++ + V Sbjct: 21 VLGVICIVLSLVICFALTPLFNQSV-------SQKASVVRVVKEIKAGDAITKDMFQTVE 73 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 E N+ + I + G ++ GD I KL D + L L Sbjct: 74 VGEYNLPEDVIK------QQDSVLGKYAVADLVPGDYILSAKLSDTPASENAYLYNLSGD 127 Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I + + + G + D V V+ + + L+ + VI + Sbjct: 128 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGSTVIPTELTYVEVIGVTASTGYDT 187 Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSEDS 234 + D DE+ L T TL ++P QAK L +S KL L L R + +E Sbjct: 188 DTGEQTKDEDEKQLPA-TVTLLVSPEQAKILAELESDGKLHLSLVYRGSKENAAKFTELQ 246 Query: 235 D 235 D Sbjct: 247 D 247 >gi|228925187|ref|ZP_04088297.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228834526|gb|EEM80055.1| hypothetical protein bthur0011_60590 [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 286 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|47568973|ref|ZP_00239664.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|301068118|ref|YP_003786889.1| hypothetical protein BACI_pCIXO100760 [Bacillus anthracis CI] gi|47554357|gb|EAL12717.1| conserved hypothetical protein protein [Bacillus cereus G9241] gi|300379208|gb|ADK08111.1| conserved hypothetical protein [Bacillus cereus biovar anthracis str. CI] Length = 286 Score = 90.3 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|94312585|ref|YP_585794.1| pilus assembly protein [Cupriavidus metallidurans CH34] gi|93356437|gb|ABF10525.1| pilus assembly protein [Cupriavidus metallidurans CH34] Length = 319 Score = 90.3 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 99/251 (39%), Gaps = 26/251 (10%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +V+ V ++AG++A+ + + V+++ + G + + L+ + Sbjct: 8 IVAIVLLVLAGLLALLALQAARHTAAPAPAQGVVATHAVVVTTRAVPAGKPLPADALQVL 67 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P + G DV + + G + V + P+ +L+ GL+ +P G Sbjct: 68 QLPID--PGGAYQDVAR------VAGQVPLVNLGANVPVLESQLL----AGLARQIPDGA 115 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIAIDHNIDSD 186 RA + + VG ++P D VDV +V + + ++LS +RV+A ++ Sbjct: 116 RAMAVAVDEVIGVGNQVQPGDFVDVFVVLRRDSQEIPQSQTRMLLSRLRVLAYGTGAVNE 175 Query: 187 ERVLVG----------STATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-PSSSEDSD 235 G TA L + Q LV AQ +L L LR+ D PS +D Sbjct: 176 APKQQGEQMMARREGAKTAVLSVPLEQVGTLVMAQQAGRLMLALRNPTDEAMPSDGMFAD 235 Query: 236 VWDVQEEGKEI 246 V + + Sbjct: 236 PPGVLQARAGV 246 >gi|330953052|gb|EGH53312.1| Flp pilus assembly protein CpaB [Pseudomonas syringae Cit 7] Length = 319 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 46/283 (16%), Positives = 95/283 (33%), Gaps = 55/283 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46 ++ + +V++ +F L A I ++ + P + Sbjct: 1 MSSRITLVLAVLFLLGALIAGYLGIAVSKQAEAPAVVIPPNGPVTTVTTIQTPPTPPVED 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV+ D+ +T + L + G A+ ++ G + Sbjct: 61 AVRHNVVGLARDVPAYTAITADDLTIERL--KVAPPGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSL 160 G + G L+ ++ +RA + + + G + P D+VDV++ + Sbjct: 113 TAGSWLTESSFDTGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDVLLYLPEDV 170 Query: 161 SERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGSTATLELTPM 202 S + VV+ +R++ + +I++DER+ + T T+ + Sbjct: 171 SNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINARTVTVAVPQA 230 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKE 245 L+ A L L +RS + N D W G E Sbjct: 231 LVARLMLASQSGVLRLAVRSADEGNL-----QDYWANDAGGPE 268 >gi|208702085|ref|YP_002267403.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97] gi|208657940|gb|ACI30310.1| Flp pilus assembly protein CpaB [Bacillus cereus H3081.97] Length = 286 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 41/240 (17%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI + EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEIVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KKELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|228950016|ref|ZP_04112204.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228809663|gb|EEM56096.1| hypothetical protein bthur0007_60880 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 286 Score = 90.0 bits (222), Expect = 3e-16, Method: Composition-based stats. Identities = 40/237 (16%), Positives = 88/237 (37%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKSSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + + +++ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGHPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV---VLSN 173 S++ L G+ A + + + ++ G I PN +VD+ + + E + + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVIFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|167845918|ref|ZP_02471426.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei B7210] Length = 207 Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 26/208 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLELTPMQA 204 ++ D TA L + Q Sbjct: 180 ATVERDGTPGPTGAGARTAVLAVPTAQV 207 >gi|330959994|gb|EGH60254.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. maculicola str. ES4326] Length = 319 Score = 89.6 bits (221), Expect = 4e-16, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 74/225 (32%), Gaps = 30/225 (13%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 Q A +V++ D+ +TP L + G D + Sbjct: 49 PPQAVPTPPVEDALRHDVVVVARDVPAYTPITPEDLLIERL--KVAPPGSFDTI------ 100 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 +L G + G + G L+ ++ +RA + + G + P D Sbjct: 101 DKLVGRSSWRTLSAGTWLSESNFEAGGT--LARMIRPHERALALQVDEVIGASGQLSPGD 158 Query: 151 HVDVVMVRSLSERKPT--VTVVLSNIRVIAI------------------DHNIDSDERVL 190 +VDV++ + P VV+ +RV+++ D + ++R Sbjct: 159 YVDVLLYLAEDTANPVRSTQVVVPALRVLSVGELLGPDRNGKPVQHVTADERLQQEQRRS 218 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 T ++ + + L+ A L L +RS + N D Sbjct: 219 SARTVSVAVPEVLLGRLMLASQTGVLRLAVRSADEGNLQDYWAGD 263 >gi|44004393|ref|NP_982061.1| hypothetical protein BCE_A0054 [Bacillus cereus ATCC 10987] gi|190015216|ref|YP_001966616.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus] gi|190015481|ref|YP_001966942.1| hypothetical protein pPER272_0071 [Bacillus cereus] gi|190015561|ref|YP_001967244.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus] gi|217956754|ref|YP_002335848.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187] gi|218848261|ref|YP_002454968.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820] gi|229020887|ref|ZP_04177586.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273] gi|229027753|ref|ZP_04183934.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272] gi|229035191|ref|ZP_04189127.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271] gi|229113409|ref|ZP_04242860.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15] gi|229142563|ref|ZP_04271044.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26] gi|229164946|ref|ZP_04292761.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803] gi|42741459|gb|AAS44904.1| conserved hypothetical protein [Bacillus cereus ATCC 10987] gi|116584468|gb|ABK00585.1| hypothetical protein BcAH187_pCER270_0101 [Bacillus cereus] gi|116584892|gb|ABK01007.1| hypothetical protein pPER272_AH820_0071 [Bacillus cereus] gi|116585162|gb|ABK01271.1| hypothetical protein pPER272_0071 [Bacillus cereus] gi|217068624|gb|ACJ82872.1| Flp pilus assembly protein CpaB [Bacillus cereus AH187] gi|218540312|gb|ACK92708.1| Flp pilus assembly protein CpaB [Bacillus cereus AH820] gi|228618530|gb|EEK75541.1| hypothetical protein bcere0009_56190 [Bacillus cereus R309803] gi|228640857|gb|EEK97207.1| hypothetical protein bcere0013_56190 [Bacillus cereus BDRD-ST26] gi|228670023|gb|EEL25415.1| hypothetical protein bcere0018_55820 [Bacillus cereus Rock1-15] gi|228728083|gb|EEL79123.1| hypothetical protein bcere0028_52090 [Bacillus cereus AH1271] gi|228733545|gb|EEL84348.1| hypothetical protein bcere0029_59380 [Bacillus cereus AH1272] gi|228740419|gb|EEL90718.1| hypothetical protein bcere0030_53460 [Bacillus cereus AH1273] Length = 286 Score = 89.6 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 43/240 (17%), Positives = 87/240 (36%), Gaps = 41/240 (17%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI + EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + +E+ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VNKKEVVGKWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|83747918|ref|ZP_00944950.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551] gi|207739459|ref|YP_002257852.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] gi|83725451|gb|EAP72597.1| SIGNAL PEPTIDE HYPOTHETICAL; CpaB2 [Ralstonia solanacearum UW551] gi|206592835|emb|CAQ59741.1| pilus assembly protein cpab [Ralstonia solanacearum IPO1609] Length = 277 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 35/204 (17%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 EN V+++ L G +T + + + P D ++ G Sbjct: 41 ENGKTLYPVVVTVKPLEAGKPITADQVAVESLPIN--PADAFADA------GKVVGREPI 92 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 PI G P+ +L + GL+ + G+RA + + VG + P D+VDV +V Sbjct: 93 TPIGTGVPLIGSQL----SSGLALQVAPGQRAVAITVDEVVGVGNRVMPGDYVDVFLVLR 148 Query: 160 LSERK---PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 ++ ++L ++RV+A+ + + L A +L Sbjct: 149 KDGQEIDDSKARLLLPHLRVLAV-----------PVESVS---------QLAIAHQSGRL 188 Query: 217 SLVLRSIADLNPSSSEDSDVWDVQ 240 L LR+ +D + D + Sbjct: 189 LLALRNPSDDAEPTVRPQDAPALA 212 >gi|326943576|gb|AEA19469.1| hypothetical protein CT43_P281127 [Bacillus thuringiensis serovar chinensis CT-43] Length = 286 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNVLR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|167582064|ref|ZP_02374938.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis TXDOH] Length = 192 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 68/189 (35%), Gaps = 22/189 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATALVPVVVATRALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I+ P+ +L+ GL+ + G+R Sbjct: 72 TPAPI--AGAFPNPTL------VTGRIPANDIVAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKRESGFGATGSEISQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERV 189 D D Sbjct: 180 ATADRDGTP 188 >gi|328952515|ref|YP_004369849.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] gi|328452839|gb|AEB08668.1| hypothetical protein Desac_0789 [Desulfobacca acetoxidans DSM 11109] Length = 357 Score = 89.2 bits (220), Expect = 5e-16, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 6/122 (4%) Query: 115 DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV--TVVLS 172 L+ +P G RA ++ + + V + D VDV+ L T +VL Sbjct: 47 PPKAVNLTENIPVGMRAVSIKVDEVTGVSRKVIKGDWVDVLATTPLPGSPHTSVARLVLD 106 Query: 173 NIRV----IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNP 228 ++V + D S ++ T TL +TP Q L+AA S AK+SL+ R D P Sbjct: 107 RVQVFDVTLEADTKGQSKQKGEKDWTVTLLVTPDQGATLLAAASQAKISLLARQANDARP 166 Query: 229 SS 230 + Sbjct: 167 HN 168 Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 61/155 (39%), Gaps = 21/155 (13%) Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-----------------R 158 + +G + + G RA T+ + + + ++ D VDV++ Sbjct: 185 KPDGDATDWIHPGMRAVTLKVRDTDGICANLRRGDRVDVLLTCPFSRFASGGNVAAGAQG 244 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD-ERVLVGSTATLELTPMQAKALVA---AQSVA 214 ++++ + +L ++ V+ + ++ + E TL++TP A+ + A S Sbjct: 245 TVTDYEMVTRTLLQDVEVLVSEKGLEPNTEDNEPVRLVTLQMTPHDAEKVTCALDATSKD 304 Query: 215 KLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 + LV R+ D S ++ + KE I Sbjct: 305 IIRLVSRNKRDRRLVCSPGQELSSLLMRKKEYNRI 339 >gi|139438675|ref|ZP_01772159.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC 25986] gi|133775755|gb|EBA39575.1| Hypothetical protein COLAER_01160 [Collinsella aerofaciens ATCC 25986] Length = 224 Score = 89.2 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 81/216 (37%), Gaps = 22/216 (10%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKF----INVLISKGDLAVGMVVTPN 64 I +S V ++A ++ M S Q E+V E AK+ + V ++ D+ VG + Sbjct: 12 IAISLVAGVLAALLCMVYGSSIRSQAEQVQAETLAKYGGDRVEVCVAARDIDVGETLDET 71 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + + + + + ++++ G + I K I + L Sbjct: 72 NVITQEWLTSLLPRDAVTE------LRQVRGDVTTSRIPKNAVICNV-YTKAESHKL--E 122 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +PKGK A ++ + +VGG +VDV + + + V ID + D Sbjct: 123 VPKGKVAVSVAVDAEHSVGGATGVGSYVDVYVQKDGVTDRLCGAYV--------IDTSED 174 Query: 185 SD-ERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 S R TL P K L+ A +SL Sbjct: 175 SGATREGKIEWVTLAADPEDVKELLGASGKGTVSLT 210 >gi|225871553|ref|YP_002752911.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102] gi|225785587|gb|ACO25805.1| Flp pilus assembly protein CpaB [Bacillus cereus 03BB102] Length = 286 Score = 89.2 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI + EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIVVAAKDIPA 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGTWTNDGQPITENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|85711967|ref|ZP_01043021.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145] gi|85694153|gb|EAQ32097.1| Flp pilus assembly protein CpaB [Idiomarina baltica OS145] Length = 226 Score = 89.2 bits (220), Expect = 6e-16, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 87/203 (42%), Gaps = 14/203 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + I++ L A + + ++ + + E P + +++ DL G + Sbjct: 1 MKAKKQWVILLLMSIVLTAFTLWLLRSYLNYETAKRLKAETPPEQA-IVVFNQDLKAGTL 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 V ++L +P V G++ + + + + + ++ + G P+ + Sbjct: 60 VDASMLSLRQYPTHLVNPGWMTE----DYVGTILDLPIKRAVTAGSPVEETQFELNYQKR 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 ++ LP+ A T+ + + G ++P+D VD+V + + + V+ N+RV++++ Sbjct: 116 MADRLPENHWAITLPVDLMQLHDGQLQPDDRVDLVSKKPMQDSLS----VVENLRVLSVN 171 Query: 181 HNIDSDERVLVGSTATLELTPMQ 203 + G + TL ++ Q Sbjct: 172 -----GTDLGQGMSVTLAVSAKQ 189 >gi|304315801|ref|YP_003850946.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777303|gb|ADL67862.1| SAF domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 213 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 80/227 (35%), Gaps = 32/227 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R+ I +S + A V + + K I V+ + D+ G + Sbjct: 6 KRIFLISISLILAAVLAFLQYQYFHKM---------TESDKKIQVIAAFSDIKAGEKID- 55 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + L P+ +P +V I G + + Sbjct: 56 SKLGVKLIPQSAYVKDMYLLSEKPTGY-------AKVDIAAGSYVMKSMVSKDNVP---- 104 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179 +L +G R T+ +++ S++ G IKP D VDV E+ V+ + + + I Sbjct: 105 VLKEGMRRVTISVNLESSLAGKIKPGDLVDVGWAPKSDEKGENGAVIANKVEIYDIVNKS 164 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D N D L+ + TL +TP QA A+ ++ L L+ Sbjct: 165 GGDIKKADKNNQYDTDSLLPAAVTLIVTPEQAIAIKEYEAKGSLFLM 211 >gi|228918617|ref|ZP_04082054.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228841025|gb|EEM86230.1| hypothetical protein bthur0012_57520 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 286 Score = 88.8 bits (219), Expect = 6e-16, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 88/237 (37%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKSSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + + +++ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----VSKRDVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|228918954|ref|ZP_04082339.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840756|gb|EEM86013.1| hypothetical protein bthur0012_60570 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 286 Score = 88.8 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 88/240 (36%), Gaps = 41/240 (17%) Query: 1 MKLTRLM---GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAV 57 MK ++ + V A VAGI + EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIVAVGLAAATVAGIYGYNHFA----------VENAVKPTKIIVAAKDIPS 50 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVD 115 + ++L P + + + + +++ G PI + + K+V Sbjct: 51 HTEIKEDMLVERTLPGDAIPPNALR-----VSKKDVVGKWTNDGQPISENSYLFKNKVVK 105 Query: 116 RGNGGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVV 170 + S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 106 KEELPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGL 165 Query: 171 LSNIRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 166 FQRVRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|167894494|ref|ZP_02481896.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 7894] Length = 204 Score = 88.4 bits (218), Expect = 9e-16, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 72/203 (35%), Gaps = 26/203 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLEL 199 ++ D TA L + Sbjct: 180 ATVERDGTPGPTGAGARTAVLAV 202 >gi|229194284|ref|ZP_04321123.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876] gi|228589183|gb|EEK47163.1| hypothetical protein bcere0002_58680 [Bacillus cereus ATCC 10876] Length = 286 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + +L P + + + + +E+ G PI + + K+V + Sbjct: 54 IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQG 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|229182299|ref|ZP_04309574.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W] gi|228601155|gb|EEK58701.1| hypothetical protein bcere0005_56080 [Bacillus cereus 172560W] Length = 286 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + +L P + + + + +E+ G PI + + K+V + Sbjct: 54 IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|291557188|emb|CBL34305.1| Flp pilus assembly protein CpaB [Eubacterium siraeum V10Sc8a] Length = 318 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 83/217 (38%), Gaps = 20/217 (9%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G++ + L + + + + ++ K D+ +G +T +E V N+ Sbjct: 9 VLGVVCIALALIICFAITPLFNASKSSTMKIIRIKNDVKIGQEITSKDIEVVEVGAYNMP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMD 135 + +++ G ++KG+ + K+ G L KRA ++ Sbjct: 69 SEVLQKS------EDVVGKYAAAEMIKGEYVLSAKVSDTPASENGYLYGLTGEKRAISIT 122 Query: 136 I-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS- 193 I S + + G + D V ++ V + + V L + VIA+ +D+ + Sbjct: 123 IPSFAGGLSGKLISGDIVSIIAVDYKEKGETLVPDELQYVEVIAVTDKKGNDDETVTVKP 182 Query: 194 ----------TATLELTPMQAKALVAAQSVAKLSLVL 220 T TL +TP QA L ++ ++ + L Sbjct: 183 DGEEETELPETVTLLVTPEQANILAELEAEGEIHVAL 219 >gi|228938208|ref|ZP_04100823.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228971086|ref|ZP_04131719.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228788609|gb|EEM36555.1| hypothetical protein bthur0003_8680 [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821441|gb|EEM67451.1| hypothetical protein bthur0008_8760 [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 286 Score = 88.0 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 88/237 (37%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + + +E+ G PI + + K+V R Sbjct: 54 IKEDMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKREE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G + PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSVIPNTYVDLYFKQIVKDGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKTLG 225 >gi|56460013|ref|YP_155294.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] gi|56179023|gb|AAV81745.1| Flp pilus assembly protein CpaB [Idiomarina loihiensis L2TR] Length = 235 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 86/213 (40%), Gaps = 16/213 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQ-TEEVITENPAKFINVLISKGDLAVGM 59 MK V +F+ + ++ + L++ + Q T + E +V++ DL VG Sbjct: 1 MKKKAKWIFAV--IFSSIISMVTIFLINQYLQQETSRRLQEASGNADSVVVFSKDLNVGD 58 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++ + L +P E + + + + +A + G +R + G+P+ L + N Sbjct: 59 ILEVSDLLVRKYPHELINEHWYLE----SAANLIIGRKLRSSVKSGEPVSERVLSNNQNN 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPTVTVVLSNIRVI 177 GLS +LP G A T+ ++K D VD+V V + R+ I V Sbjct: 115 GLSEVLPNGYYAITVTTDNLGHHNALLKVGDLVDIVFVGESFENSRQYVS---FEEIEVF 171 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 +I + + TL + P + A A Sbjct: 172 ----DIHGLQEGYGSYSLTLLVEPEKVAAFTRA 200 >gi|326390773|ref|ZP_08212326.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325993167|gb|EGD51606.1| SAF domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 212 Score = 87.6 bits (216), Expect = 2e-15, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 32/226 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + + I +S + A + K I V+ + D+ G + Sbjct: 5 KKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKSGEKIDT 55 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 L P+ ++ +++ N +V I G + + Sbjct: 56 K-LGIKEIPQSA----YVKEMYLANEKAT---GYAKVDIAAGSYVLKSMVSHEEVP---- 103 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179 +L + R T+ ++++S++ G IKP D VD+ V + +V +++ + Sbjct: 104 VLKEDMRRVTIGVNLTSSLAGKIKPGDFVDIGWVPKDEAKDGASKIVAEKVQIYDVVNKS 163 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 D N D+ L+ + TL +TP QA + ++ L L Sbjct: 164 GEDVRKADKNNQYDKESLIPAAVTLIVTPEQAVIIKEYEAKGSLFL 209 >gi|167570106|ref|ZP_02362980.1| Flp pilus assembly protein CpaB family [Burkholderia oklahomensis C6786] Length = 168 Score = 87.3 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 36/180 (20%), Positives = 69/180 (38%), Gaps = 26/180 (14%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G + + L+ P G + + G + I+ Sbjct: 1 PVVVATRALPTGQPIPADALKVQQMPASIA--GAFSNPAL------VTGRIPASDIVAQA 52 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------V 157 P+ +L+ GL+ + G+RA + + ++AVG ++P + VDV + Sbjct: 53 PVLENELMS----GLADQIAPGERAVAIKVDDTNAVGNRLRPGNFVDVFVNMKRESSFGT 108 Query: 158 RSLSERKPTVTVVLSNIRVIAI-DHNIDSDERVLV----GSTATLELTPMQAKALVAAQS 212 + ++LS +RV++ D D D TA L + Q AL A++ Sbjct: 109 TGSEISQSQARLLLSRVRVLSFGDATADRDGTPGPTGAGARTAVLAVPTAQVDALTLAEA 168 >gi|293606492|ref|ZP_06688850.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] gi|292815115|gb|EFF74238.1| conserved hypothetical protein [Achromobacter piechaudii ATCC 43553] Length = 198 Score = 86.9 bits (214), Expect = 2e-15, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 66/204 (32%), Gaps = 24/204 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------NVLIS 51 M + V V LV +A RL + A V+++ Sbjct: 1 MSSLSKIIAGVLLVAGLVLAFLAWRLATHSSAPPASPTPVATAPAPAAPAPVTLHPVVVA 60 Query: 52 KGDLAVGMVVTP-NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 K + G + N+L + + N L+G + RV I GDPI Sbjct: 61 KQAIPAGTRIDAQNMLTVAQWQAAL--------SNSFNTPDPLEGAVARVDIAAGDPIVP 112 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER--KPTVT 168 L GL+ L G+RA + + G I P D VDV + + Sbjct: 113 SLLAQ----GLAKQLKPGERAVAIAVDEVIGGGNRIAPGDLVDVFFMVEKGQEISGGQAR 168 Query: 169 VVLSNIRVIAIDHNIDSDERVLVG 192 ++ S +RV+A + Sbjct: 169 LLQSQLRVLAYGKSSVDGPEEKSV 192 >gi|167824387|ref|ZP_02455858.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 9] Length = 201 Score = 86.9 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 36/202 (17%), Positives = 71/202 (35%), Gaps = 26/202 (12%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPIA--GAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAI-D 180 A + + ++AVG ++P + VDV + + ++LS +RV++ D Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 181 HNIDSDERVLV----GSTATLE 198 ++ D TA L Sbjct: 180 ATVERDGTPGPTGAGARTAVLA 201 >gi|51891526|ref|YP_074217.1| hypothetical protein STH388 [Symbiobacterium thermophilum IAM 14863] gi|51855215|dbj|BAD39373.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 278 Score = 86.9 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 51/266 (19%), Positives = 96/266 (36%), Gaps = 42/266 (15%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ V A V ++A +E T VL ++ V P+ +++ A Sbjct: 8 LALVGAFVCALLAAWFNIRFLEMQQERFT--------VLTVVREVPPYTPVGPDAVQFAA 59 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK--- 127 P E+V I D L+G R ++ G +R LV G L++ L Sbjct: 60 VPRESVPADAITDPS------ALEGRYTRALLIPGTILREAHLVPAGGSSLAARLAAAAS 113 Query: 128 -GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS------------ERKPTVTVVLSNI 174 RA + + ++ V G ++ D VD+++ + R V+ + Sbjct: 114 TDVRAMALRVDEATGVAGTLQEGDPVDILVAINADVTEAQERGEGRPARGTLARVIAQRV 173 Query: 175 RVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 V+ + + S L++TP A+ + A + + L+ +P + D Sbjct: 174 PVLHV-----QRDEAGGPSAVVLQVTPRTAEEIAFAHANGMIWLL------TSPYTGPDE 222 Query: 235 DVWDVQEEGKEIQIIKAGVIVNKDGE 260 V +EI + G+ GE Sbjct: 223 PVA-TTGVDREIFFERYGIGQRDTGE 247 >gi|156977410|ref|YP_001448316.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116] gi|156529004|gb|ABU74089.1| hypothetical protein VIBHAR_06197 [Vibrio harveyi ATCC BAA-1116] Length = 274 Score = 86.5 bits (213), Expect = 3e-15, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 105/268 (39%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G++ + +P EV+ + +++ V ++ G Sbjct: 1 MRSRLVLLVAIAALIVGALGVVDLFKSNPQPKANTEVVEKPNEEYVAVWVTTKAYEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + FP + + + V + + VL+ + KG + E V G G Sbjct: 61 FDAQGVAKQQFP---LSEALVLGVREDAQINFSPSVLLNRSLEKGAVVLPEYQVSPGQAG 117 Query: 121 -LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167 + L+ +G +++S + + I+P ++D++ V S ++ R Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSYIDILTVSSPNDNLAKNIDKPKRFRGLKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219 ++ L +++V+ I + + D V S T +E+ P L AQ + + Sbjct: 178 SMFLKHVKVLNIGGDDEGDSSVTARSPINEDGLTTVVIEVKPDDLAKLALAQRTMHIE-I 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS P +E +V D +E++ Sbjct: 237 YRSQTYNKPEYAEVRNVIDNYTGIEELR 264 >gi|167816011|ref|ZP_02447691.1| Flp pilus assembly protein CpaB family [Burkholderia pseudomallei 91] Length = 183 Score = 86.5 bits (213), Expect = 4e-15, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 64/182 (35%), Gaps = 21/182 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 + A++ GI A L + V+++ L G + + L+ Sbjct: 12 LLIGIAILLGIYAWLLGRKPAPVAPGAAPAVATAMVPVVVAARALPAGQPIPADALKVQQ 71 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P G + + G + I P+ +L+ GL+ + G+R Sbjct: 72 TPTPI--AGAFPNPML------VTGRIPASDIGAQAPVLESELMS----GLADQIAPGER 119 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDH 181 A + + ++AVG ++P + VDV + + ++LS +RV++ Sbjct: 120 AVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGSEIAQTQARLLLSRVRVLSFGD 179 Query: 182 NI 183 Sbjct: 180 AT 181 >gi|229065593|ref|ZP_04200823.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603] gi|228715662|gb|EEL67455.1| hypothetical protein bcere0026_55960 [Bacillus cereus AH603] Length = 286 Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 87/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P +++ + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDSIPPNALR-----VSKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L + A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKNEEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++P Q + L A+ + Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSPEQLQYLNRAKMLG 225 >gi|119961714|ref|YP_948564.1| Flp pilus assembly protein [Arthrobacter aurescens TC1] gi|119948573|gb|ABM07484.1| putative Flp pilus assembly protein CpaB family [Arthrobacter aurescens TC1] Length = 269 Score = 85.7 bits (211), Expect = 6e-15, Method: Composition-based stats. Identities = 49/221 (22%), Positives = 89/221 (40%), Gaps = 27/221 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 + V+ + + AGI +L T + ++V+++ DL G +T + L Sbjct: 71 LAVALLLCVAAGIAVHQL------------TPASEQRVSVVVAARDLPTGTSLTESDLTS 118 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V P + G + N++ L G + P+ KG L+ G L + P G Sbjct: 119 VGVPPDLALSGAL------NSIGTLVGRQLASPLGKGQIPTESSLLGPG---LLTGAPVG 169 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN-IRVIAI-DHNIDSD 186 A + ++ S++ ++ P V VV+ + S + + VL+ + V+ Sbjct: 170 TAAVPLRMADPSSIQ-LLSPGQLVTVVLTAAGSYDESRQSQVLAGPVPVLWTSAQGGKPG 228 Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 E + G T + P QA+ L A + KL VL S + Sbjct: 229 EWLGTGDTDGLVVVAADPQQAEKLAGASTQGKLFFVLVSPS 269 >gi|170720035|ref|YP_001747723.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619] gi|169758038|gb|ACA71354.1| Flp pilus assembly protein CpaB [Pseudomonas putida W619] Length = 315 Score = 85.3 bits (210), Expect = 7e-15, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 38/231 (16%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + +++ + L +T + + V G V + G P Sbjct: 57 EPQRFPIVVLRKALPANTPLTAEDVLLERL--QVVPAGAFQQVDH------VIGRSSARP 108 Query: 102 ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + G + G L+ ++ +RA + + G + P D VDV++ Sbjct: 109 LAAGSWLDESSFQPGGP--LARMIRAHERAVAVGVDEVVGAAGQLYPGDFVDVLLYLREE 166 Query: 162 ERKP--TVTVVLSNIRVIAIDHN--IDSDERVLV-------------------GSTATLE 198 P + VVL +RV+++ + +D R + T L Sbjct: 167 ANNPQSSAQVVLPALRVLSVGEQMGVTNDGRPALTAEELKARREQATPGNLASTRTVVLA 226 Query: 199 LTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQII 249 + A L+ A V L L +RS A+ + W + +++ I Sbjct: 227 VPEALASRLMLAAQVGTLRLAVRSAAEQRL-----ARYWAEADSKPQVESI 272 >gi|320161550|ref|YP_004174774.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1] gi|320161814|ref|YP_004175039.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1] gi|319995403|dbj|BAJ64174.1| hypothetical protein ANT_21480 [Anaerolinea thermophila UNI-1] gi|319995668|dbj|BAJ64439.1| hypothetical protein ANT_24130 [Anaerolinea thermophila UNI-1] Length = 290 Score = 85.3 bits (210), Expect = 8e-15, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 68/154 (44%), Gaps = 12/154 (7%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 P ++V+++ GDL G V+T L P+ +G + D Q L G +RV Sbjct: 22 QPEPQVSVVVAAGDLPEGRVLTEGDLTAKELPKSLAPEGAVSDP------QSLVGQRLRV 75 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 GDP+ L GG + L +RA + ++ + + G++KP D V V ++ + Sbjct: 76 ARSAGDPVLPVHL-----GGETLELRPNERAVALSVTAAQGLAGLLKPGDRVGVTVIVNA 130 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194 S ++ + +RV+ ID +E T Sbjct: 131 S-QQTFAKYIAGGLRVLWIDPAFRREEAPAPQGT 163 >gi|119717338|ref|YP_924303.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119537999|gb|ABL82616.1| SAF domain [Nocardioides sp. JS614] Length = 244 Score = 84.9 bits (209), Expect = 9e-15, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 83/220 (37%), Gaps = 23/220 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTP----NILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 E+ + ++VL++ +A G V + + + + DG + ++ Sbjct: 32 RAEDRFESVDVLVATQPIAAGETVEAARAADKIGTRSVALRDRLDGALT------SLDGH 85 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + VPI G+ + KL +P G+ A +++++ ++ V G + P V Sbjct: 86 AGQVALVPIQPGEQLLPAKLGSSSEAAAPLPIPPGQMAVSVNLTDAARVSGFLNPGSEVA 145 Query: 154 VVMVR-SLSERKPTVTVVLSNIRVIAIDHN---IDSDERVLVGSTA--------TLELTP 201 V + + ++LS + V+ + + T T+ + Sbjct: 146 VFLNGVDQQTGQTFTRLLLSRVTVLGVGSTAPVATTTTDDTGAQTVEQLPRTLLTIAVDQ 205 Query: 202 MQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 QA+ ++ A S +L+ L + D SS + ++ Sbjct: 206 KQAQKVLFASSNGELAFALLNP-DSKVSSGKGVTAQNLFR 244 >gi|228912580|ref|ZP_04076242.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL 200] gi|228847049|gb|EEM92041.1| hypothetical protein bthur0013_66390 [Bacillus thuringiensis IBL 200] Length = 286 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 42/237 (17%), Positives = 86/237 (36%), Gaps = 35/237 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K V+++ D+ Sbjct: 1 MKPSKFQKKQITAV-GLAAITVAGIYGYNHFA------VENAVKPTKVVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + +L P + + + + +E+ G PI + + K+V + Sbjct: 54 IKEEMLVERTLPGDGIPPNALR-----VSKKEVIGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDLETSSGNSIIPNTYVDLYFKQVVKDGDNEKVVFGGLFQG 168 Query: 174 IRVIAIDHNIDSD----------------ERVLVGSTATLELTPMQAKALVAAQSVA 214 +RV A + D ++ V TL ++ Q + L A+++ Sbjct: 169 VRVTAAKDSNTEDAFVLEKKESKEEQEGKQKPKVTRLYTLAVSTEQLQYLNRAKTLG 225 >gi|148975961|ref|ZP_01812750.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3] gi|145964706|gb|EDK29959.1| hypothetical protein VSWAT3_06606 [Vibrionales bacterium SWAT-3] Length = 274 Score = 84.6 bits (208), Expect = 1e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 89/235 (37%), Gaps = 26/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G+I + P T+EV+ E K + V IS G Sbjct: 1 MRSRLVLLVAIAALIIGALGVIDLFKSEPKPTTTDEVVAEKSEKHVGVWISTESFEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + P + + Q + + L+ + GD + E V G G Sbjct: 61 INAQGVVKQQLPLSEALTLGVREDAQISFSPSI---LLNRNLKAGDVVLPEYQVSPGKPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTV 167 + L+ +G + +S + + I+P +DV+ V S + R Sbjct: 118 YIDLLVTEGMTLYPLKVSDKNLINDYIRPGSFIDVLTVSSPNANLAGNIDKPKRFRGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS---------TATLELTPMQAKALVAAQSV 213 ++ L +++V+ I ++ D+ + + T +E++P + L AQ Sbjct: 178 SMFLKHVKVLNIGND-DTGDSSITARSPSKEDGLTTVVIEVSPDELPKLALAQRT 231 >gi|149188847|ref|ZP_01867137.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1] gi|148837267|gb|EDL54214.1| hypothetical protein VSAK1_05840 [Vibrio shilonii AK1] Length = 281 Score = 83.8 bits (206), Expect = 2e-14, Method: Composition-based stats. Identities = 53/279 (18%), Positives = 105/279 (37%), Gaps = 33/279 (11%) Query: 1 MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHV----QTEEVITENPAKFINVLISKGDL 55 MK + + ++ + ++ +M V Q E A+++ V S + Sbjct: 1 MKSKIIFAVAFLAILIGVLGVYSSMNKPLQQPVVEEKQAATPTIEPKAEYVTVWRSTESI 60 Query: 56 AVGMVVTPNIL-EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 + G + + + + +G DV L PI G I E L Sbjct: 61 SRGEPINSSKVKREQLLLTSALDEGIRSDVELDFDPTTLFN----TPISSGQLILPEMLT 116 Query: 115 DRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE----------- 162 + G + L+ +G + +S + + I+P +H+D++ V S + Sbjct: 117 KKDAPGYIDLLVTEGMTLYPLVVSSKNLISDFIRPGEHIDILTVSSPKDNLSGKREKPIK 176 Query: 163 -RKPTVTVVLSNIRVIAID-----HNID--SDERVLVGSTATLELTPMQAKALVAAQSVA 214 R T T+ L NI+V+ + ++ S+ + +T +E+ P + L AQ Sbjct: 177 FRGVTATLFLQNIKVLNMGGSEEEQSVKPVSENKEDGFTTIIIEIPPEEVARLALAQR-- 234 Query: 215 KLSL-VLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 + L V RS P ++ +V D +E++ +G Sbjct: 235 TMHLEVYRSREYQEPVYADVRNVMDNYIGVEELRGSPSG 273 >gi|160893683|ref|ZP_02074467.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50] gi|156864668|gb|EDO58099.1| hypothetical protein CLOL250_01237 [Clostridium sp. L2-50] Length = 286 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 46/233 (19%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V +I V+P + TE + V+ ++VG +T ++++ + Sbjct: 9 VLGVLCIVLSLIICFAVTPLFNKAMSEKTE----IVRVV---KPISVGEEITSDMVKTIE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ D + + G + GD I K+ + + L L Sbjct: 62 VGSYNLPDDVVKHS------DTVVGAFASADLAPGDYILTSKIAEEPAAENAYLYHLTGE 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ + ++ + G +K D V V+ + K + L + VIA+ Sbjct: 116 KQAISVTVKAFANGLSGKLKSGDIVSVIAPDYRKQGKTVIPAELQYVEVIAVTANSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 ++ + T TL +TP Q+ L ++ KL L L D + Sbjct: 176 NTGEELEDGADRELPGTVTLLVTPEQSMVLAELEADGKLHLSLVYRGDEKSAG 228 >gi|328954938|ref|YP_004372271.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2] gi|328455262|gb|AEB06456.1| Flp pilus assembly protein CpaB [Coriobacterium glomerans PW2] Length = 223 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 92/248 (37%), Gaps = 30/248 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVG 58 + R + I +S +A +++ S + + V + A+ ++V ++ + G Sbjct: 1 MNRTIRIALSVASGALAIFLSLSYASSVRSEADRVQADALARYGGDLVSVCVATRTIEPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + ++ + + G +++++ G V + + G Sbjct: 61 ETLDETNVQVKEWVASLLPQGAAT------SLRDVAGTRVTSRVPSHAVLCPVYTETSGE 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-LSERKPTVTVVLSNIRVI 177 + +P GK A ++ + A+GG ++ D VDV + + LS+R ++ Sbjct: 115 ---TLDVPSGKVAVSVPVDDQHALGGAVESGDTVDVYVSKDGLSDRLCEARII------- 164 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 D + ATL + P K L+AA + +SL + P+ S D+ Sbjct: 165 --DTSSRDSSADTAMKWATLAVDPDTVKELLAAIARGSVSLTM-------PAPSTDAKAS 215 Query: 238 DVQEEGKE 245 G+ Sbjct: 216 ATSGGGRS 223 >gi|303241932|ref|ZP_07328425.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] gi|302590487|gb|EFL60242.1| Flp pilus assembly protein CpaB [Acetivibrio cellulolyticus CD2] Length = 257 Score = 83.4 bits (205), Expect = 3e-14, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 92/244 (37%), Gaps = 50/244 (20%) Query: 2 KLTRLMGIVVSG-VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 K R + +V++G V L+A ++ +S + + V+ + ++ V Sbjct: 9 KKNRSIYLVIAGIVLGLIAAVLMYMGISSY------------TGMVKVVAASKEIPAFSV 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + ++ + P+E ++ + Q + G + R I I+ E L +G+ Sbjct: 57 INEADIKLIDVPKEFA-------KNKASDKQLVIGRVSRTIIPADTAIQQEFLAAKGSSS 109 Query: 121 -------LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-------------- 159 L+ L + RA T+ + S GG +KP D VD++ S Sbjct: 110 SSLLSTKLTDLQNEKLRAFTIPVDQISGCGGEMKPGDLVDIIGSFSIVIPEDESVNNQPQ 169 Query: 160 ---LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 +++ ++ + V+ + + G +E P QA+ + A K+ Sbjct: 170 SSKPQQKEVISKLLAGQVLVL----KTLGENTEIEGIVVAVE--PQQAQEIQFALQAGKI 223 Query: 217 SLVL 220 S+ L Sbjct: 224 SVAL 227 >gi|269836549|ref|YP_003318777.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM 20745] gi|269785812|gb|ACZ37955.1| Flp pilus assembly protein CpaB [Sphaerobacter thermophilus DSM 20745] Length = 326 Score = 83.0 bits (204), Expect = 3e-14, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 91/278 (32%), Gaps = 88/278 (31%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 NV+++ D+ V++ + +E V G A ++ G+ V Sbjct: 39 AEPTKANVVVAARDIPANTVLSEDDIEIAEVDATGVAPGSAT------APAQVVGMAVSG 92 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----- 155 ++KG I L+ G L+ L +G RA + + +A+GGMI+P+D +D++ Sbjct: 93 NLVKGQQILSANLLAPG---LTFDLAEGHRAIALPVDRINALGGMIRPDDRIDIIYSIRI 149 Query: 156 -MVRSLSERKPTVT---------------------------------------------- 168 + R + V Sbjct: 150 NLTRVVPSEPMEVRDTTEGYARDDTLVLQPPPGVAGDATYPYPGEPGSRFLVEDNAPGNP 209 Query: 169 ---VVLSNIRVI---AIDHNIDSD--------------------ERVLVGSTATLELTPM 202 VV+ N+RV+ A D + SD E++ LE+ P Sbjct: 210 VTKVVVQNVRVLRVIAGDTTVSSDPTATGNGEASGTPTAPQGAAEKLPNADLLVLEVDPQ 269 Query: 203 QAKALV-AAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 QA+ + + + +VLR D ++ + Sbjct: 270 QAEVIKFLMDNDGQYQVVLRPKDDAGEVTTNGVTYEQL 307 >gi|313835706|gb|EFS73420.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA2] gi|314928377|gb|EFS92208.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL044PA1] gi|314970229|gb|EFT14327.1| Flp pilus assembly protein CpaB [Propionibacterium acnes HL037PA3] gi|328908042|gb|EGG27801.1| Flp pilus assembly protein CpaB [Propionibacterium sp. P08] Length = 242 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 85/217 (39%), Gaps = 27/217 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 L+ ++++ V A+ + R V+ + Q + V +K ++ ++ Sbjct: 6 RRGLIYLLIAVVVAIATFLTVTRYVASVNSQV--------GSRVTVYRAKTAISPYTPLS 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 ++LE V P ++ L G + + G I + L+ + Sbjct: 58 DSVLEPVEVPRRW------TSDSSMVSLSSLRGRRIGFRVEAGTVITRDMLIAPSD---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAIDH 181 L +R ++++ + V G +KP D VD+ V + +V V+ N RV++I Sbjct: 108 --LNPDEREIAINVNSVTGVAGRVKPGDRVDIYAVFADVPGLPKSVRVLTRNTRVVSIAG 165 Query: 182 NIDSDERVLVGST------ATLELTPMQAKALVAAQS 212 ++ + G T TL LTP A A+ A + Sbjct: 166 KMNISGQSGNGVTETEVIPVTLALTPNDATAVTYAAA 202 >gi|297543563|ref|YP_003675865.1| SAF domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841338|gb|ADH59854.1| SAF domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 212 Score = 83.0 bits (204), Expect = 4e-14, Method: Composition-based stats. Identities = 40/227 (17%), Positives = 85/227 (37%), Gaps = 32/227 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + + I +S + A + K I V+ + D+ G + Sbjct: 5 KKAILIALSLILAGGLSFFQYQYFKSM---------AESDKKIQVIAAVSDIKAGEKIDT 55 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 L P+ ++ +++ A ++ G +V I G + + Sbjct: 56 K-LGIKVIPQSA----YVKEMYL--ANNKVTG-YAKVDIAAGSYVLKSMVSQEKIP---- 103 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI---- 179 +L + R T+ ++++S++ G IKP D VD+ V + + +V +++ + Sbjct: 104 VLKEDMRRVTIGVNLTSSLAGKIKPGDVVDIGWVPNDEAKDGASKIVAEKVQIYDVVNKS 163 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 D N D+ L+ + TL +TP QA + ++ L L+ Sbjct: 164 GEDVRKADKNNQYDKESLIPAAVTLIVTPEQAITIREYETKGSLFLI 210 >gi|84385685|ref|ZP_00988716.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01] gi|84379665|gb|EAP96517.1| hypothetical protein V12B01_26164 [Vibrio splendidus 12B01] Length = 274 Score = 82.6 bits (203), Expect = 4e-14, Method: Composition-based stats. Identities = 43/269 (15%), Positives = 101/269 (37%), Gaps = 27/269 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + ++ + G++ + P T EV+ E + + V ++ G Sbjct: 1 MRSRLVLLVAITALIVGALGVVDLFKSEPQSTTTTEVVEEKNEEHVAVWMTTEPYEKGRA 60 Query: 61 VTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGN 118 + + P + + G +D A L + G+ + E ++ Sbjct: 61 IDAQGVVKQQLPLSQALTLGVREDAQISFAPSTLLNR----SLNAGEVVLPEYQVTPGQP 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPT 166 G + L+ +G + +S + + I+P +D++ V S ++ R Sbjct: 117 GYIDLLVTEGMTLYPLKVSDKNLINDYIRPGTSIDILTVSSPNDNLAGNIDKPKRFRGVK 176 Query: 167 VTVVLSNIRVIAIDHNIDSD--------ERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 ++ L N++V+ I ++ D + +T +E++P + L AQ + Sbjct: 177 ASMFLKNVKVLNIGNDATGDSSITARAPSKEDGLTTVVIEVSPDELPKLALAQRTMHIE- 235 Query: 219 VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 + RS P +E ++ D E++ Sbjct: 236 IYRSQTYTQPEFAEVRNIIDNYTGIAELR 264 >gi|326204891|ref|ZP_08194744.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM 2782] gi|325984940|gb|EGD45783.1| Flp pilus assembly protein CpaB [Clostridium papyrosolvens DSM 2782] Length = 283 Score = 82.6 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 77/194 (39%), Gaps = 22/194 (11%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 ++ +++ D+ G + N+++ V N+ G I + ++ V + Sbjct: 34 SQRTSIVRVSRDIKAGDKINGNMVQTVEVGSYNLPSGVIK------SKDDVIDKYVLADM 87 Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159 +GD I + KL S L L K+A ++ + +S + G + P D V V+ Sbjct: 88 KEGDYILITKLSAAPVAENSYLHSLNGEKQAISVTVRSFASGLSGKLMPGDIVSVIAPDY 147 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVL-------------VGSTATLELTPMQAKA 206 ++ V L +RVI + + D + ST TL ++ Q++ Sbjct: 148 KNQGISIVPEELRYVRVIGVTASTGYDTNTSENMEKKSDNKEKELPSTVTLLVSQTQSEI 207 Query: 207 LVAAQSVAKLSLVL 220 L +S KL L L Sbjct: 208 LAGLESDGKLHLSL 221 >gi|89897311|ref|YP_520798.1| hypothetical protein DSY4565 [Desulfitobacterium hafniense Y51] gi|89336759|dbj|BAE86354.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 277 Score = 82.6 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 52/242 (21%), Positives = 92/242 (38%), Gaps = 29/242 (11%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +V GV +V + +++P Q A+ V+ D+ G V+T ++++ V Sbjct: 8 MVLGVLCIVLSLFICFVLTPLFNQGV-------ARKATVVRVVKDIKSGGVITKDMVQTV 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPK 127 N+ + I + + G +L GD I EK+ D + L L Sbjct: 61 EVGSYNLPENVIRQS------ETVIGKYAEADLLPGDSILTEKVSDTPASENAYLYSLNG 114 Query: 128 GKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------- 179 KRA ++ I + + G + D V V+ + + L+ + VI + Sbjct: 115 DKRAISVSIKSFAQGLSGKLISGDIVSVIAPDYKKQGATVIPPELTYVEVIGVTASTGYD 174 Query: 180 ----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSSSED 233 + D E + +T TL + P Q K L ++ KL L L R + +E Sbjct: 175 TGAGEQIKDGGEERELPATVTLLVAPEQGKILAELEAEGKLHLSLVHRGAQETAAQFTEL 234 Query: 234 SD 235 D Sbjct: 235 QD 236 >gi|163801678|ref|ZP_02195576.1| hypothetical protein 1103602000597_AND4_09497 [Vibrio sp. AND4] gi|159174595|gb|EDP59397.1| hypothetical protein AND4_09497 [Vibrio sp. AND4] Length = 274 Score = 82.3 bits (202), Expect = 6e-14, Method: Composition-based stats. Identities = 44/270 (16%), Positives = 100/270 (37%), Gaps = 29/270 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + + + G+I + P + T V + K+++V ++ G Sbjct: 1 MRSRLVLLVAIVALIVGALGVIDLFKSEPQAITTAPVTSNKKEKYVSVWMTTEVYEKGNA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119 + + P I + Q + L+ + +G+ + E ++ G Sbjct: 61 IKAQGVVKQQLPLSKALKLGIREDTQISFSPS---ALLNRGLAQGEVVLPEYQVNPDQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------V 167 + L+ G + +S + + G I+P +D++ V S + T Sbjct: 118 YIDLLIKDGMTLYPLKVSTQNLIKGYIRPGTFIDILTVSSPNANLATGAEKPKRFKGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS---------TATLELTPMQAKALVAAQSVAKLSL 218 ++ L +++V+ I ++ + D+ + T +E+ P L AQ L + Sbjct: 178 SMFLKHVKVLNIGND-EKDKNPVSARSPSKEESLTTVIIEVKPDDLARLALAQQ--TLHI 234 Query: 219 -VLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 V RS P +E ++ D E++ Sbjct: 235 EVYRSQTYNQPEYAEVRNIIDNYTGIDELR 264 >gi|269216235|ref|ZP_06160089.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122] gi|269130494|gb|EEZ61572.1| Flp pilus assembly protein CpaB [Slackia exigua ATCC 700122] Length = 255 Score = 82.3 bits (202), Expect = 7e-14, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 78/199 (39%), Gaps = 16/199 (8%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 +L S + E++ + + V ++ D+AVG ++ + + D + D Sbjct: 7 QLESAVADERAEMLERFGGEQVEVRVATRDIAVGERLSDANSTSQLWLSALLPDQAVIDA 66 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 ++ G V PI +G+ + ++ + L +P G A ++ ++VGG Sbjct: 67 ------GDVAGRSVTTPIFEGEVVCAQRFDETEEKPL--QVPDGMCAVSVPADTLASVGG 118 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST---ATLELTP 201 + P VDV + + ++ ++ V++ + + S TL + P Sbjct: 119 SVAPGALVDVY-----TSSGSSTDLLAQSVLVLSTSASGQASASPAASSPLSWVTLAVAP 173 Query: 202 MQAKALVAAQSVAKLSLVL 220 + + VAA +L L Sbjct: 174 DRVEEFVAAAQRTELYFTL 192 >gi|284802136|ref|YP_003414001.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578] gi|284995278|ref|YP_003417046.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923] gi|284057698|gb|ADB68639.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5578] gi|284060745|gb|ADB71684.1| pilus assembly protein CpaB [Listeria monocytogenes 08-5923] Length = 284 Score = 81.9 bits (201), Expect = 8e-14, Method: Composition-based stats. Identities = 40/216 (18%), Positives = 86/216 (39%), Gaps = 20/216 (9%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V G+I + L + + ++ ++ D+ +G +T ++++ V N+ Sbjct: 9 VIGVICIVLSLIICFAVTPLFNKGMSQKTEIVRVTKDIKIGDEITKDMVQIVEVGSYNLP 68 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMD 135 + + + + + G ++ GD I K+ + L L K+A ++ Sbjct: 69 EDVVKNT------ETVLGKFASADMVPGDYIISSKIAAEPAAENAYLYNLTGEKQAMSVS 122 Query: 136 ISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI----------DHNID 184 + ++ + G + D V ++ + + L + VIA+ D Sbjct: 123 VKSFATGLSGKLVSGDIVSIIAPDYKKQGTTVIPPELQYVEVIAVTAGSGYDANTGEQED 182 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 S+E+ L ST TL +TP Q+K L ++ L + L Sbjct: 183 SEEKELP-STVTLLVTPEQSKILAMLEADGNLHISL 217 >gi|70734200|ref|YP_257840.1| hypothetical protein PFL_0698 [Pseudomonas fluorescens Pf-5] gi|68348499|gb|AAY96105.1| conserved hypothetical protein [Pseudomonas fluorescens Pf-5] Length = 311 Score = 81.5 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 73/214 (34%), Gaps = 33/214 (15%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + V++ D+ + + + L G + +A+ + Sbjct: 47 PTTTSAEDQTRQPVVVLVRDVPPFVPLAADDLALEKL--RTAPAGSL------SAISQAV 98 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G + G + + G L+ ++ +RA + + G + P D+VDV Sbjct: 99 GRTPWRQLNAGTWLNEQSFSTGGA--LARMIHSDERALAVAVDEVIGAAGQLSPGDYVDV 156 Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAIDHNID-------------------SDERVLVGS 193 V+ + S + + + + +RV+A+ + D+R L Sbjct: 157 VLFLRQDTSNPQQSAQIAVPAMRVLAVGEQLGLANDGQPASPGLSNEEKLKQDQRRLNAR 216 Query: 194 TATLELTPMQ-AKALVAAQSVAKLSLVLRSIADL 226 T L + P Q L+ A V L L +RS + Sbjct: 217 TVVLAV-PEQLLSRLMLATQVGVLRLAVRSSEEQ 249 >gi|160942271|ref|ZP_02089580.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC BAA-613] gi|158434828|gb|EDP12595.1| hypothetical protein CLOBOL_07157 [Clostridium bolteae ATCC BAA-613] Length = 289 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 87/223 (39%), Gaps = 26/223 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V G+ +V ++ ++P +T ++ ++ ++ +G +T ++++ V Sbjct: 9 VIGLLCIVLSLVICFAITPMFNRTI-------SEKTEIVRVTKNIRIGDEITKDMVKPVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + + ++ E+ G + GD I K+ + + L L Sbjct: 62 VGAYNLPESVVRNI------DEVIGKYASADMAPGDYIIRSKVAEEPAAENAYLYNLNGE 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ + ++ + G + D V V+ + + L + VIA+ Sbjct: 116 KQAISVSVKAFANGLSGKLVSGDIVSVIAPDYRKQGSTVIPPELQYVEVIAVTANSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D + + T TL +TP Q + L ++ KL L L Sbjct: 176 NTGERGDEETEKELPGTVTLLVTPDQGRVLAELEADGKLHLSL 218 >gi|291525761|emb|CBK91348.1| Flp pilus assembly protein CpaB [Eubacterium rectale DSM 17629] Length = 282 Score = 81.1 bits (199), Expect = 1e-13, Method: Composition-based stats. Identities = 45/234 (19%), Positives = 96/234 (41%), Gaps = 28/234 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V G+F + +I ++P ++ +K + ++ + +T ++L+ V Sbjct: 9 VLGIFCIAVSLIICFAITP-------LVNAGLSKKVTIVRFNRQVNEREEITRSMLDEVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKG 128 N+ + I ++ +++G + + GD I +K+ L Sbjct: 62 VGNHNLPENVIRNIA------DVEGKYLTTTVYAGDYILTDKISDEPAAENKYLYSLNGE 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I+ + + G +K D V V+ L + + V L + VIA+ Sbjct: 116 KQAMSITINTFAEGLSGKLKSGDIVSVIAPDYLGSGETIIPVELKYVEVIAVTAKSGYDA 175 Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 + + DE+ L ST T+ + P Q+K L ++ ++ L L D + +S Sbjct: 176 NTGEQMSEEDEKELP-STVTILVRPEQSKLLARLEAEGEIHLSLVFRGDADKAS 228 >gi|59711119|ref|YP_203895.1| CpaB family Flp pilus assembly protein [Vibrio fischeri ES114] gi|59479220|gb|AAW85007.1| Flp pilus assembly protein CpaB family [Vibrio fischeri ES114] Length = 270 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 58/235 (24%), Positives = 94/235 (40%), Gaps = 25/235 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE---NPAKFINVLISKGDLAV 57 MK I+V V A+ G+ M S E + E P + V I+K DL Sbjct: 1 MKSK---IILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKRPEATVMVWIAKKDLMF 57 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G V LE + I + N ++L LV+ IL+GD + + L+ G Sbjct: 58 GSPVQRTDLEVQRISQTQADRFGIIHDVKFNFNKKL---LVKKDILQGDIVTSDMLLSPG 114 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------- 166 G L+ ++ +GK +++S + +GG I D VD+ + S + Sbjct: 115 QEGYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSL 174 Query: 167 -VTVVLSNIRVIAIDHNIDSDE-RVLVGSTAT---LELTPMQAKALVAAQSVAKL 216 + +L+ I V+ I T T LE++ + LV AQ +A+L Sbjct: 175 KMAPLLTQIMVLDIIQQEKPVRLNSKSTKTVTNLVLEVSNRELAKLVIAQRIAEL 229 >gi|302387441|ref|YP_003823263.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] gi|302198069|gb|ADL05640.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] Length = 277 Score = 80.7 bits (198), Expect = 2e-13, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 91/248 (36%), Gaps = 37/248 (14%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V ++ ++P Q+ + ++ + +G +T ++++ V Sbjct: 9 VIGVICIVLSLLICFAITPLFNQSI-------TQKTEIVRVTKPIKIGETITKDMVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + + + G + GD I K+ D + L L Sbjct: 62 VGGYNLPEDVVRHT------DTVIGKFASADLAPGDYIIASKIADAPAAENAYLYNLTGE 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ + ++ + G + D V +V + + L + VIA+ Sbjct: 116 KQAISVSVKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDA 175 Query: 180 DHN----------IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLN 227 + D+DE+ L T TL +TP Q+K L ++ L + L R + Sbjct: 176 NQQNGKSNPSSEQADADEKELPA-TVTLLVTPEQSKILAELEANGTLHVSLVYRGSKENA 234 Query: 228 PSSSEDSD 235 +E D Sbjct: 235 AKFTEAQD 242 >gi|167747677|ref|ZP_02419804.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662] gi|239625012|ref|ZP_04668043.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|167653039|gb|EDR97168.1| hypothetical protein ANACAC_02398 [Anaerostipes caccae DSM 14662] gi|239521398|gb|EEQ61264.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 263 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 38/192 (19%), Positives = 77/192 (40%), Gaps = 17/192 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + +K + ++ D+ +G +T +++ V N+ + + + + G Sbjct: 31 KEVSKKVEIVRVVKDIKIGDKITGDMVRTVEVGSLNLPSEVMKN------KENVIGKYAS 84 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVM 156 + GD I K+ D + L L K+A ++ + ++ + G +K D V V+ Sbjct: 85 ADMAPGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIA 144 Query: 157 VRSLSERKPTVTVVLSNIRVIAI------DHNIDSD--ERVLVGSTATLELTPMQAKALV 208 + + + L + VIA+ D N + E + ST TL TP Q++ L Sbjct: 145 PDYQKQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILA 204 Query: 209 AAQSVAKLSLVL 220 + L + L Sbjct: 205 MMEKDGNLHISL 216 >gi|226309723|ref|YP_002769617.1| hypothetical protein BBR47_01360 [Brevibacillus brevis NBRC 100599] gi|226092671|dbj|BAH41113.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 242 Score = 80.3 bits (197), Expect = 2e-13, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 80/242 (33%), Gaps = 29/242 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 RL+ I++ FA G+ ++ PH V ++ + + G ++ Sbjct: 5 PLRLLAILL---FATCIGVATYIILKPHQVTYIQLRSTVEKES------------GQLLE 49 Query: 63 PNILEWVAFPEENVFDGFIDDVHQP-------NAMQELDGVLVRVPILKGDPIRLEKLVD 115 +E P G P Q L G+ + G P+ L Sbjct: 50 ARDME----PLTLRLGGIFQQPIAPIPGLIPWEEGQSLVGLAFTRQVKGGRPLLKSDLEQ 105 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 N S ++ + ++ I + V + + V V E ++L N+ Sbjct: 106 TSNAQGSGVITEKMTGMSIPIDNVAGVSPHVSSGERVHVYASFE-DETGAHSGLLLQNMP 164 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 +I I ++ D LV TL LT +A L A K+ L L ++ D D Sbjct: 165 IIGIQREMEGDHPNLVA--VTLSLTRDEAVLLTHALHYGKIRLGLAAVKDEGNPGIGDVK 222 Query: 236 VW 237 Sbjct: 223 FA 224 >gi|254429646|ref|ZP_05043353.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] gi|196195815|gb|EDX90774.1| Flp pilus assembly protein CpaB [Alcanivorax sp. DG881] Length = 278 Score = 80.3 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 50/249 (20%), Positives = 91/249 (36%), Gaps = 25/249 (10%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQT--------EEVITENPAKFINVLISKGDLAVGMV 60 ++ + ALVA I+A+ +S + + A + L VG Sbjct: 1 MLPALAVALVALILALVGLSRDPTPALVVKDEGADTASSTQEAPSYRYWVVTQSLNVGDT 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + L V+ P + A + + G +R G+ + L G Sbjct: 61 LDEESLAVVSSPA--------PIANVLTADETVVGKELRQFARPGELLSRNHLEPGGT-- 110 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIRVIAI 179 L LP G RA + + GG+++P D VDVV+ R + P V+L NI+V+A+ Sbjct: 111 LPGALPTGFRAVGVAVDDVVMAGGLLQPGDLVDVVVAFRKVERDNPAALVLLRNIQVLAV 170 Query: 180 ------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 + E +T L + + L+ A + L + + D + + Sbjct: 171 KGAMAAASSEQDREAQRRNNTVVLAVPRDKVPPLLLAAEEGSMRLAVVASDDKDTNKEAV 230 Query: 234 SDVWDVQEE 242 + D + + Sbjct: 231 ASASDGKGK 239 >gi|72162670|ref|YP_290327.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] gi|71916402|gb|AAZ56304.1| hypothetical protein Tfu_2271 [Thermobifida fusca YX] Length = 258 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 48/229 (20%), Positives = 84/229 (36%), Gaps = 14/229 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ V A A IA+ L +V T + + VL D+ Sbjct: 1 MNPRQRRGVLLMIVAAFGA--IAVFLTIVSYVNT---LNRELGTYRTVLRLTQDVDPYQP 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++E P + + + + E P+ + L+ + Sbjct: 56 ITEDMVEPYEVPAKFFDEDLF--LSDLASADEALSQPGSEPVSA-TFLHAGTLLQKSMVI 112 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAI 179 + L G+R + I+ + V G + VDV +E+ P + VL+N+ V+ + Sbjct: 113 PAPALENGEREIAIMINAETGVAGKVSRQSRVDVYASFQANEQSPACAIRVLTNVEVLDV 172 Query: 180 D----HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSI 223 T LTP QA L A+S A K+ L L S Sbjct: 173 GDIGSQIDAQTGGTNTVVPVTFRLTPQQALQLTYAESFASKVRLALVSA 221 >gi|167836795|ref|ZP_02463678.1| Flp pilus assembly protein CpaB family [Burkholderia thailandensis MSMB43] Length = 174 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 65/179 (36%), Gaps = 21/179 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + V+ A++ G+ A L + V+++ L G + + L Sbjct: 8 IIAVLLIGIAILLGLYAWVLGRKPAPVAPAAAPAAATAMVPVVVAARALPAGQPIPADAL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P G + + G + I+ P+ +L+ GL+ + Sbjct: 68 KVQQTPTPI--AGAFPNPTL------VTGRIPASDIVAQAPVLESELMS----GLADQIA 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---------KPTVTVVLSNIRV 176 G+RA + + ++AVG ++P + VDV + + ++LS +RV Sbjct: 116 PGERAVAIKVDDTNAVGNRLRPGNFVDVFVNLKREGGFGATGAEIAQTQARLLLSRVRV 174 >gi|153833237|ref|ZP_01985904.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] gi|148870508|gb|EDL69423.1| Flp pilus assembly protein CpaB [Vibrio harveyi HY01] Length = 274 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 44/268 (16%), Positives = 100/268 (37%), Gaps = 25/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + + + G+I + P + T V+ ++++V ++ G Sbjct: 1 MRSRLVLLVAIVALIVGALGVIDLFKSDPQPIATAAVVENTNEEYVSVWMTTEAYEKGHA 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 ++ + P + + Q + + L+ + GD + E V G G Sbjct: 61 ISAQGVVKQQLPLNEALALGVREDAQISFSPSI---LLNRSLDLGDVVLPEYQVSPGQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 + L+ +G +++S + + I+P +D++ V S ++ Sbjct: 118 YIDLLVTEGMTLYPLEVSDQNLINDYIRPGSFIDILTVSSPNDNLAQNIDKPKRFKGVKA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGS--------TATLELTPMQAKALVAAQSVAKLSLV 219 ++ L +++V+ I + D V S T +E+ P L AQ + + Sbjct: 178 SMFLKHVKVLNIGDDAKGDSSVTARSPSKENGLTTVVIEVKPDDLAKLALAQRTMHIE-I 236 Query: 220 LRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 RS P +E +V D +E++ Sbjct: 237 YRSQTYSKPEYAEVRNVIDNYTGIEELR 264 >gi|312621079|ref|YP_003993807.1| flp pilus assembly protein rcpc/cpab [Photobacterium damselae subsp. damselae] gi|311872800|emb|CBX86891.1| Flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae] Length = 267 Score = 79.9 bits (196), Expect = 3e-13, Method: Composition-based stats. Identities = 50/235 (21%), Positives = 95/235 (40%), Gaps = 26/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + +A L +P E I E P I V D+ G Sbjct: 1 MKSKLILAFAIIVIL-FGLYGLATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEF 57 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118 + N+L PE GF+DDV+ + + + + G + ++ LV + Sbjct: 58 IERNMLSVENIPESEANGLGFVDDVNLDWKAK----TVFKSHLSAGSLLTIDDLVQPDQD 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV----MVRSLSERKPTV------- 167 G + ++ + K + ++ SS +GG+I VD++ + + S Sbjct: 114 GYIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLTGTASNFGNNSGSSKNTV 173 Query: 168 --TVVLSNIRVIAID-HNIDSDERV-LVGSTATL--ELTPMQAKALVAAQSVAKL 216 T ++S ++V+ + ID++ + TL ELT QA L AQ ++++ Sbjct: 174 SITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEI 228 >gi|160940635|ref|ZP_02087978.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC BAA-613] gi|158436370|gb|EDP14137.1| hypothetical protein CLOBOL_05529 [Clostridium bolteae ATCC BAA-613] Length = 288 Score = 79.6 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 40/236 (16%), Positives = 90/236 (38%), Gaps = 33/236 (13%) Query: 1 MK-LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ R + ++S + A V +A+ V+T+ + + ++ L G Sbjct: 1 MRINNRFIYGIISILLAAVIAFVAI-----------PVVTKKTSSTLEIVRVVNPLERGQ 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T LE + N+ ++++ G ++ GD I K+ Sbjct: 50 QITAQDLELIEVGSYNLPASVAIR------LEDVTGTYAAASLMPGDYILPNKVSSSPLS 103 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNI 174 +L +P G A ++ ++++A+ ++ D + E+ V + L + Sbjct: 104 SDPALYSIPDGMVAISVTTQTLATALSDKLQSGDIIRFYHYNDEHEQLNPVEDIPELRYV 163 Query: 175 RVIAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +V+++ ++ DE L +T T+ +P QA L ++ L + L Sbjct: 164 KVLSVTDSQGLDIDYTQPLEEDEEKLQTATITVLASPEQAMLLTRYENEGILHVAL 219 >gi|269105131|ref|ZP_06157825.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] gi|268160581|gb|EEZ39080.1| flp pilus assembly protein RcpC/CpaB [Photobacterium damselae subsp. damselae CIP 102761] Length = 267 Score = 79.6 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 98/235 (41%), Gaps = 26/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + +A L +P E I E P I V D+ G Sbjct: 1 MKSKLILAFAIIVIL-FGLYGLATNLSNPTSPANHEPIKEEPK--IRVWKLNKDVHPGEF 57 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118 + N+L PE GF+DDV+ + + + + G + ++ LV + Sbjct: 58 IERNMLSVENIPESEANGLGFVDDVNLDWKAK----TVFKSHLSAGSLLTIDDLVQPDQD 113 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL-------------SERKP 165 G + ++ + K + ++ SS +GG+I VD++ + L S+ Sbjct: 114 GYIDFIIDENKIPFPIIVTPSSVIGGVIANGSLVDILALTGLNGTASNFGNNSGSSKNTV 173 Query: 166 TVTVVLSNIRVIAID-HNIDSDERV-LVGSTATL--ELTPMQAKALVAAQSVAKL 216 ++T ++S ++V+ + ID++ + TL ELT QA L AQ ++++ Sbjct: 174 SITPIISAVKVLLVKHQLIDTNRQSDTSDEQVTLVVELTRKQAVVLTVAQRISEI 228 >gi|312139255|ref|YP_004006591.1| flp pilus assembly protein cpab [Rhodococcus equi 103S] gi|311888594|emb|CBH47906.1| putative Flp pilus assembly protein CpaB [Rhodococcus equi 103S] Length = 245 Score = 79.6 bits (195), Expect = 4e-13, Method: Composition-based stats. Identities = 48/258 (18%), Positives = 92/258 (35%), Gaps = 34/258 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 TR++ + + V A VAG +A+ +V+ + + ++VL++ + Sbjct: 2 RTRIIAAICAIVLA-VAGTLALI----SYVRGADARALAGTRTVDVLVADQTIPKNTPAD 56 Query: 63 P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ PE V + ++ +L G + +L G+ + + VD Sbjct: 57 SLVGMVVVKKLPEMAVLPDRVT------SLDQLSGKVALTDLLPGEQLVSARFVDPATAR 110 Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G + T+ + A+GG I D V V M S + + L +RV Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170 Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + + D T +L + A+ +V A + L Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224 Query: 226 LNPSSSEDSDVWDVQEEG 243 P SS ++ V EG Sbjct: 225 NEPPSSNEAGASVVSPEG 242 >gi|297157611|gb|ADI07323.1| hypothetical protein SBI_04202 [Streptomyces bingchenggensis BCW-1] Length = 234 Score = 79.6 bits (195), Expect = 5e-13, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 92/251 (36%), Gaps = 26/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L AG ++S +V E A + K ++ Sbjct: 1 MNSRQRRGVILLVLSVLCAGGAFAGVLSVIRDVESKVGPETTAYKL-----KSNVPAYQA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E ++ P+ + + D + ++ G + P+ KG ++ + +V+R Sbjct: 56 LDAGQFEKISMPKRWLPSTAVTD------LADVRGKIAVTPLRKGSLLQDDMIVERPA-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ ++ P ++++ VI Sbjct: 108 ----LKPGQQEIAIMIDAATGVAGKINPGSKVNIYATFEGRSQRDDPVSKIIVAGAEVID 163 Query: 179 IDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + D D+ + T L A+ + A+S A + L L + + S Sbjct: 164 VGKLTALEPDQDDTRRLDKAVPITFALDTGDAQRVAYAESFATHVRLALVAPGGDDTVSP 223 Query: 232 EDSDVWDVQEE 242 D + Sbjct: 224 RDRTYTLDGDR 234 >gi|167628702|ref|YP_001679201.1| hypothetical protein HM1_0585 [Heliobacterium modesticaldum Ice1] gi|167591442|gb|ABZ83190.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 270 Score = 79.2 bits (194), Expect = 5e-13, Method: Composition-based stats. Identities = 45/195 (23%), Positives = 79/195 (40%), Gaps = 27/195 (13%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 +K +++ D+ G +T ++++ V N+ D + ++ G + Sbjct: 34 SKKTDIVRVARDIKAGEQITRDMVKTVEVGSYNLPDNVVR------SLDAALGKYAAADM 87 Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159 GD I KL D + L L K+A ++ I S+ + G + D V V+ + Sbjct: 88 APGDYILNTKLTDSPAAENAYLYNLTGEKQAMSVTIKSFSNGLSGKLISGDIVSVI---A 144 Query: 160 LSERKPTVTVV---LSNIRVIAI------DHNID-----SDERVLVGSTATLELTPMQAK 205 RK TV+ L + VI + D + DE+ L T TL ++P Q+ Sbjct: 145 PDYRKMGATVIPPELKYVEVIGVTASSGYDTDTSHGLKKEDEKQLPA-TVTLLVSPEQST 203 Query: 206 ALVAAQSVAKLSLVL 220 L ++ KL L L Sbjct: 204 ILAGLEADGKLHLSL 218 >gi|197335888|ref|YP_002155268.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] gi|197317378|gb|ACH66825.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] Length = 270 Score = 79.2 bits (194), Expect = 6e-13, Method: Composition-based stats. Identities = 55/235 (23%), Positives = 96/235 (40%), Gaps = 25/235 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITE---NPAKFINVLISKGDLAV 57 MK I+V V A+ G+ M S E + E P + V I+K DL Sbjct: 1 MKSK---IILVLAVIAISIGLYGMSQTSTTESPITEKVQEFDKLPEPTVMVWIAKKDLMF 57 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 G +V LE + I + N ++L L++ IL+GD + + ++ G Sbjct: 58 GSLVQRTDLEVQRISQTQADRFGIAHDVKFNFNKKL---LIKKDILQGDIVTSDMVLSPG 114 Query: 118 -NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---------- 166 G L+ ++ +GK +++S + +GG I D VD+ + S + Sbjct: 115 QEGYLNLVISEGKVPFNLEVSNDAILGGAISVGDVVDIASISSSEQNLSNDASISNVQSL 174 Query: 167 -VTVVLSNIRVIAIDHNIDS----DERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + +L+ I V+ I + +T LE++ + LV AQ +A+L Sbjct: 175 KMAPLLTQIMVLDIIQQEKPVRLNSKSTKTVTTLVLEVSNRELAKLVIAQRIAEL 229 >gi|325275758|ref|ZP_08141635.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51] gi|324099109|gb|EGB97078.1| Flp pilus assembly protein CpaB [Pseudomonas sp. TJI-51] Length = 318 Score = 78.8 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 33/221 (14%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P V++ + + +T + + + G V Q Sbjct: 44 PSVATAPAPSAPVEVPRTAVVVLRKSVPANTPLTEDDVLVERL--QVAPAGAYQQVAQ-- 99 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 + G P+ G + + G L+ ++ +RA + + G ++P Sbjct: 100 ----VIGRSSARPLAAGTWLEEASF--QAGGPLARMIRAHERAVALGVDEVVGAAGQLRP 153 Query: 149 NDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVG------------ 192 D+VDV++ + + + VVL +RV+++ +D R Sbjct: 154 GDYVDVLLFLREEPNNPQASAQVVLPALRVLSVGEQTGLANDGRPAQSADEQKARRDQSG 213 Query: 193 -------STATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 T + + A L+ A L L +RS + Sbjct: 214 LGNGAGTRTVAVAVPEAMASRLMLAAQAGTLRLAVRSADEQ 254 >gi|258514750|ref|YP_003190972.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] gi|257778455|gb|ACV62349.1| Flp pilus assembly protein CpaB [Desulfotomaculum acetoxidans DSM 771] Length = 286 Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 52/245 (21%), Positives = 92/245 (37%), Gaps = 33/245 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V +I ++P Q+ A+ I V+ D+ G +T ++++ V Sbjct: 9 VLGVICIVLALIICFGLTPLFNQSVS----QKAQIIRVV---KDIKAGDAITKDMVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + I + G + GD I KL D + L L Sbjct: 62 VGGYNLPEDVIK------QQEAALGKYAVADLSPGDYILTAKLSDTPASENAYLYNLNGD 115 Query: 129 KRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I + + + G + D V V+ + + L+ + VI + Sbjct: 116 KQAISVSIKNFAGGLSGKLISGDIVSVIAPDYKKQGMTVIPPELTYVEVIGVTASTGYDT 175 Query: 180 -------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPSS 230 D + D + +T TL ++P Q+K L +S KL L L R + Sbjct: 176 DQQDTGTDSSAKDDSEKQLPATVTLLVSPEQSKILAELESDGKLHLSLVYRGSKESAAKF 235 Query: 231 SEDSD 235 +E D Sbjct: 236 TELQD 240 >gi|229588196|ref|YP_002870315.1| hypothetical protein PFLU0648 [Pseudomonas fluorescens SBW25] gi|229360062|emb|CAY46916.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 313 Score = 78.4 bits (192), Expect = 9e-13, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 72/213 (33%), Gaps = 32/213 (15%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 + + V++ D+ +T L V G + + + Sbjct: 46 KTIAAAEDQTRQPVVVLVHDVPAYRALTAADLVVERL--RTVPVGSLT------QLDQAI 97 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G + + G + + G G L+ ++ +RA + + G + P D+VDV Sbjct: 98 GRMPLRALGAGTWLTEDSFT--GGGPLARMIRPDERALAVAVDEVIGAAGQLTPGDYVDV 155 Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGSTATLE------------ 198 ++ + S + + +VL +R++++ + +D V T+E Sbjct: 156 LLFLRQDASNAEQSAQIVLPAMRLLSVGDQMGLANDGLPAVPPPVTVEERAQAAQRRAAA 215 Query: 199 -----LTPMQ-AKALVAAQSVAKLSLVLRSIAD 225 P L+ A L L +RS + Sbjct: 216 RTVVLAVPEPLLSRLMLAAQAGTLRLAVRSAEE 248 >gi|283797119|ref|ZP_06346272.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|291075536|gb|EFE12900.1| Flp pilus assembly protein CpaB [Clostridium sp. M62/1] Length = 280 Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 87/224 (38%), Gaps = 26/224 (11%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 V GV +V +I V+P + TE + V+ ++ G +T ++++ V Sbjct: 8 AVIGVICIVLSLIICFAVTPLFNKAISDKTE----IVRVV---KEIRTGEEITADMVKTV 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPK 127 N+ + + + + + G ++ GD I K+ + + L L Sbjct: 61 EVGAYNLPEDVVR------STETVVGKFASADMVPGDYIIASKIAEEPAAENAYLYSLTG 114 Query: 128 GKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------- 179 K+A ++ + ++ + G ++ D V V+ + + L + VIA+ Sbjct: 115 EKQAISVSVKSFANGLSGKLQSGDIVSVIAPDYKKQGLTVIPPELKYVEVIAVTANSGAD 174 Query: 180 ---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + + + T TL +TP Q+ L ++ + L L Sbjct: 175 ANTGEHSEDEGDKELPDTVTLLVTPEQSMILAELEADGDIHLSL 218 >gi|297202071|ref|ZP_06919468.1| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083] gi|297148028|gb|EDY58323.2| flp pilus assembly protein CpaB [Streptomyces sviceus ATCC 29083] Length = 235 Score = 78.4 bits (192), Expect = 1e-12, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 77/201 (38%), Gaps = 22/201 (10%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K D+ +T E P+ + + D + L + + KG ++ + Sbjct: 47 KKDIEPYTRLTAAQFEKTEMPKRWLSANAVTD------LAALRDKIAVTTLKKGSLLQSD 100 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169 +VD+ L G++ + I ++ V G I P V+V + Sbjct: 101 MIVDQP------ALQPGQQEVAIMIDAATGVAGKITPGSAVNVYATFEGQRENDPDQSKI 154 Query: 170 VLSNIRVIAIDH----NIDSDERVLVGSTA---TLELTPMQAKALVAAQSVA-KLSLVLR 221 +++N RV+ + D+D+R S A T L+ + A+ L A+S A ++ L L Sbjct: 155 IVTNARVLDVGQITALQPDADDRTREASKAVPITFALSALDAQRLTYAESFAKRVRLALV 214 Query: 222 SIADLNPSSSEDSDVWDVQEE 242 + + ++ +++ Sbjct: 215 APGETGTVPEQERTYELAKDK 235 >gi|325673440|ref|ZP_08153131.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707] gi|325555461|gb|EGD25132.1| hypothetical protein HMPREF0724_10913 [Rhodococcus equi ATCC 33707] Length = 245 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 47/258 (18%), Positives = 91/258 (35%), Gaps = 34/258 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 TR++ + + V A VAG +A+ +V+ + + ++VL++ + Sbjct: 2 RTRIIAAICAIVLA-VAGTLALI----SYVRGADARALAGTRTVDVLVADQTIPKNTPAD 56 Query: 63 P--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ PE V + ++ +L G + +L G+ + + D Sbjct: 57 SLVGMVVVKKLPEMAVLP------ERVTSLDQLSGKVALTDLLPGEQLVSARFADPATAR 110 Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G + T+ + A+GG I D V V M S + + L +RV Sbjct: 111 SQDQGGIPEGMQEVTVLLEPQRALGGHIASGDTVGVFMSFSPPVKNYETHLRLQKVRVTR 170 Query: 179 I---------DHNIDSDERVLVGST----ATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 + + D T +L + A+ +V A + L Sbjct: 171 VQGTFSNADEGDSATVDSSPSPAPTEAFLVSLAVDVPMAERVVFAAEHGTIWLS------ 224 Query: 226 LNPSSSEDSDVWDVQEEG 243 P SS ++ V EG Sbjct: 225 NEPLSSNEAGASVVSPEG 242 >gi|77456877|ref|YP_346382.1| Flp pilus assembly CpaB [Pseudomonas fluorescens Pf0-1] gi|77380880|gb|ABA72393.1| putative Flp pilus assembly protein [Pseudomonas fluorescens Pf0-1] Length = 312 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 36/226 (15%), Positives = 79/226 (34%), Gaps = 33/226 (14%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 V T + + + + VL+ D+A + +T + G + ++ Sbjct: 44 PVDTPAPVEDPTRQPVVVLV--RDIAPFVTLTAADVTVEKL--RTAPAGSL------ASV 93 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 ++ G + G + E L+ ++ G+RA + + GG + P D Sbjct: 94 DQVIGRTPWRALSAGTWLTQESF--EAGSPLARMIRPGERALAVAVDEVINAGGQLAPGD 151 Query: 151 HVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNID-------------------SDERV 189 +VDV++ + + +PT +V+ +RV+ + + ++ Sbjct: 152 YVDVLLFLRKDENNPQPTAQLVVPAVRVLGVGSQMGLTNSGQPASPAHSEEEKLKQEQLR 211 Query: 190 LVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + L + L+ A S L L +RS + + D Sbjct: 212 AAARSVVLAVPEPLLNRLMLASSAGVLRLAVRSADEQQLARYWAGD 257 >gi|220930147|ref|YP_002507056.1| SAF domain protein [Clostridium cellulolyticum H10] gi|220000475|gb|ACL77076.1| SAF domain protein [Clostridium cellulolyticum H10] Length = 294 Score = 78.0 bits (191), Expect = 1e-12, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 89/236 (37%), Gaps = 31/236 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV ++ ++ V+P + ++ ++ D+ G +T N+++ V Sbjct: 9 VLGVICILLSLVICFAVTPLFNSSI-------SQRTKIVRVSRDIKAGDKITGNMVQIVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ G I + + G + GD I KL S L L Sbjct: 62 VGSYNLPSGVIKN------KDDAIGKYASADMKTGDYIFNTKLSAAPAAENSYLYSLNGE 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI------DH 181 K+A ++ + +S + G + D V V+ ++ + L + VI + D Sbjct: 116 KQAMSVTVGSFASGLSGKLMSGDIVSVIAPDYKNQGTAVIPEELQYVEVIGVTASTGYDT 175 Query: 182 NIDSDERVLVGS-------TATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNP 228 N + G+ T TL ++ +Q+K L A +S KL L L R I + Sbjct: 176 NTSENTEKQTGNKEKELPSTVTLLVSAVQSKTLAALESDGKLHLSLVYRGIKENAE 231 >gi|302387183|ref|YP_003823005.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] gi|302197811|gb|ADL05382.1| Flp pilus assembly protein CpaB [Clostridium saccharolyticum WM1] Length = 283 Score = 77.6 bits (190), Expect = 1e-12, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 75/192 (39%), Gaps = 21/192 (10%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 ++ ++ ++ VG V+T + ++ V N+ + I + G + Sbjct: 34 SQKTEIVRVTKEIKVGEVITQDKVKTVEVGGYNLPENVIRT------KENAVGTYALADL 87 Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159 GD I K+ + + L L K+A ++ I S+ + G ++ D V V+ Sbjct: 88 SIGDYILNTKVSKTPSAENAYLYHLDGSKQAISITIKSFSNGLSGKLQSGDIVSVIAPDY 147 Query: 160 LSERKPTVTVVLSNIRVIAI-----------DHNIDSDERVLVGSTATLELTPMQAKALV 208 + + L + VI++ + DE+ L ST TL +TP Q L Sbjct: 148 KKQGATVIPPELKYVEVISVTASNGYDANTGEQETSKDEKELP-STVTLLVTPEQGNLLA 206 Query: 209 AAQSVAKLSLVL 220 + +S K L L Sbjct: 207 SLESDGKTHLSL 218 >gi|312882143|ref|ZP_07741892.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC BAA-2122] gi|309370189|gb|EFP97692.1| Flp pilus assembly protein CpaB [Vibrio caribbenthicus ATCC BAA-2122] Length = 276 Score = 77.6 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 97/270 (35%), Gaps = 27/270 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ I + + G++ EV++ +++ V ++ G Sbjct: 1 MRTPLIIFITIVALIVGALGVVDFLNTKDKPTVITEVVSPEEDQYVAVWVTINFYNRGDE 60 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNG 119 VT + P I + + + + L+ + G+ + E ++ G Sbjct: 61 VTSQGVVKKQLPLNEALKLGIREDAEISFSPSV---LLNRSLKTGEVVLPEYQVAPNQPG 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTV 167 + L+ G + IS + + I+P ++D++ V S +E Sbjct: 118 YVDLLVSPGMTLYPLQISNRNLIKDYIRPGSYIDILTVSSPNENLAGNLDKPKRFKGVEA 177 Query: 168 TVVLSNIRVIAIDHNIDSDERVLV----------GSTATLELTPMQAKALVAAQSVAKLS 217 T+ L N++V+ I D E V +T +E+ P + L AQ + Sbjct: 178 TMFLKNVKVLNIGGGGDDSENNYVTAQSPVEEDGVTTVVIEVDPNELTRLALAQRTMHIE 237 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 V RS A +E ++ D +E++ Sbjct: 238 -VYRSQAYTQSEHAEVRNIIDNYTGIEELR 266 >gi|221070073|ref|ZP_03546178.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] gi|220715096|gb|EED70464.1| Flp pilus assembly protein CpaB [Comamonas testosteroni KF-1] Length = 329 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 52/272 (19%), Positives = 97/272 (35%), Gaps = 30/272 (11%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + V+ + ++A +P P ++V+++ + G + L Sbjct: 11 VLLAVALALGVYGWMLARAPQAPDPQAQASTSDSQPNASLSVVVAAQAVPAGQALKAEDL 70 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + P + DG +Q G + V I KG P+ ++V GL+ L Sbjct: 71 QLMQLPAK--PDGAY------GEIQAAIGAVPAVDIPKGAPVFQGQMVT----GLALKLS 118 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---KPTVTVVLSNIRVIA----- 178 +G+RA + + S G I+P D VDV + ++LS RV+A Sbjct: 119 EGERAVAVKVDESIGAGNRIRPGDFVDVFFALRRDGNEIDQSQARLLLSRKRVLAYGSAS 178 Query: 179 IDHNIDSDER-------VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSS 231 +D +++ TA L + + L+ S L L LR+ D+ Sbjct: 179 VDAVTTAEKTEGKQANGPDNARTAVLAVPVAEVNQLLLGGSSGSLLLALRNPTDMTEPDR 238 Query: 232 EDSDVWDVQEEGKEIQIIKAGVIVNKDGEGIS 263 E + + K V +G + Sbjct: 239 EKFAPL---PGVLTVAMTKGSVAAPLEGADAA 267 >gi|325964059|ref|YP_004241965.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470146|gb|ADX73831.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] Length = 257 Score = 77.2 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 15/195 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 T +T P + L + DL+ G ++P + V P + DGF+ + + Sbjct: 73 TVHQLTPAPVSTVTALAAARDLSAGAAISPADVSAVRVPPGMMADGFLQNA------GDA 126 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + P+ KG + +L+ G L + P G A + ++ S++ ++ P V+ Sbjct: 127 AGKQLAAPLRKGQLLTDAQLLGPG---LLAGTPPGSAAVPLRMADPSSIQ-LVSPGQLVN 182 Query: 154 VVMVRSLS-ERKPTVTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALV 208 VV+ +++ V+ + V+ + + QA L Sbjct: 183 VVLTAGNGFDQQEPPEVLAEGVPVLWTSTQGGQSGQWLGTSETEGLIVVAANGDQAARLA 242 Query: 209 AAQSVAKLSLVLRSI 223 A + KL VL Sbjct: 243 GASTQGKLFFVLVGP 257 >gi|222834615|gb|EEE73078.1| predicted protein [Populus trichocarpa] Length = 388 Score = 76.9 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 57/161 (35%), Gaps = 39/161 (24%) Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + + G P+ ++L+ GL+ L G+RA + I A G ++P D VDV Sbjct: 1 MALTPGTPLFEQQLLS----GLALQLEPGQRALAIAIREQMAAGHHVRPGDFVDVYFTLD 56 Query: 160 LSERK----PTVTVVLSNIRVI-------------AIDHNIDSD---------------- 186 + ++L+ RV+ A+ D Sbjct: 57 GKSDQAPVDAQTRLLLARSRVLAYGSGSVERPPMPAVQRQAQQDKESAGSSLRRASAADQ 116 Query: 187 --ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIAD 225 +R +A L + + L A+ +L+L LR+ D Sbjct: 117 TGQRPENVQSAVLAVPLDDVERLTLAEKFGQLTLALRNPDD 157 >gi|240145308|ref|ZP_04743909.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis L1-82] gi|257202665|gb|EEV00950.1| putative Flp pilus assembly protein CpaB [Roseburia intestinalis L1-82] Length = 231 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 16/208 (7%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 ++ ++ ++ D+ G + +L+ V N+ + + ++ E Sbjct: 24 AVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLPENVLR------SITE 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPN 149 +G + + GD I EK+ D L L K+A ++ IS + + G +K Sbjct: 78 AEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISITISSFAEGLSGKLKSG 137 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDERVLVGSTATLELTPM 202 D V V+ L + + L + VIA+ + + +E + ST T+ + P Sbjct: 138 DIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEEEKELPSTVTVLVRPE 197 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230 Q++ L ++ ++ L L D ++ Sbjct: 198 QSRLLARLEAEGEIHLSLVYRGDSQKAA 225 >gi|220913319|ref|YP_002488628.1| SAF domain protein [Arthrobacter chlorophenolicus A6] gi|219860197|gb|ACL40539.1| SAF domain protein [Arthrobacter chlorophenolicus A6] Length = 242 Score = 76.5 bits (187), Expect = 3e-12, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 75/195 (38%), Gaps = 15/195 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 T +T PA + L + DL G VT + L V P + +G + + E Sbjct: 56 TVHQLTPAPADTVTALSAARDLPAGTAVTASDLVPVRVPPGLLSEGVL------SGQAEA 109 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + P+ KG + +L+ G L + P G A + ++ +S++ ++ P V+ Sbjct: 110 AGKQLATPLRKGQLVTDVQLLGPG---LLTGTPPGSAAVPLRMADASSIQ-LVSPGQLVN 165 Query: 154 VVMVRSLS-ERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALV 208 VV+ +++ V+ + + V+ + + T Q+ L Sbjct: 166 VVLTSGNGFDQQGPSEVLAAGVPVLWTATKGGQGGQWLGTAETDGLIVVAATAEQSARLA 225 Query: 209 AAQSVAKLSLVLRSI 223 A + KL VL Sbjct: 226 GASTQGKLFFVLVGP 240 >gi|257784838|ref|YP_003180055.1| SAF domain-containing protein [Atopobium parvulum DSM 20469] gi|257473345|gb|ACV51464.1| SAF domain protein [Atopobium parvulum DSM 20469] Length = 275 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 86/220 (39%), Gaps = 19/220 (8%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQT-EEVITENPAKFINVLISKGDLAVGMV 60 K TR++ V+S + A ++ V ++ E I + + ++L++ + G Sbjct: 3 KKTRILISVLSALLASFCFFAYVQSVRAEAEKSRAEAIQKYGGELTSILVATKQIEPGET 62 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ + + ++ + + +G I + + + G V I G P+ L + Sbjct: 63 LSSSNTQVKSWISDLIPEGAITNP------ESVMGRTVSSVIGVGMPVVSLHLRSVASQ- 115 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 +P+ T+ + + + V +T + S+I V+ Sbjct: 116 --ITIPENLIGLTISHGEKYGLAERLSAGTKLAAYEVTD-----SLITCIASDISVL--- 165 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + D++ + S+ TL LTP Q A+++A + L L Sbjct: 166 -SDDAEGTLYTSSSVTLGLTPEQVPAVLSAYARGTLRFTL 204 >gi|330895617|gb|EGH27924.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. japonica str. M301072PT] Length = 215 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 59/153 (38%), Gaps = 22/153 (14%) Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 G + G + G L+ ++ +RA + + + G + P D+VDV Sbjct: 1 GRSSGRTLTAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYVDV 58 Query: 155 VMV--RSLSERKPTVTVVLSNIRVIAID------------HNIDSDERV------LVGST 194 ++ +S + VV+ +R++ + +I++DER+ + T Sbjct: 59 LLYLPEDMSNPNRSSQVVVPALRILGVGALLGPDRNGKPVQDINADERLKQEQQRINART 118 Query: 195 ATLELTPMQAKALVAAQSVAKLSLVLRSIADLN 227 T+ + L+ A L L +RS + N Sbjct: 119 VTVAVPQALVARLMLASQTGVLRLAVRSADEGN 151 >gi|153956473|ref|YP_001397238.1| hypothetical protein CKL_3890 [Clostridium kluyveri DSM 555] gi|219856777|ref|YP_002473899.1| hypothetical protein CKR_3434 [Clostridium kluyveri NBRC 12016] gi|146349331|gb|EDK35867.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555] gi|219570501|dbj|BAH08485.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 276 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 90/246 (36%), Gaps = 34/246 (13%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV +V ++ V+P Q+ ++ ++ + +G +T ++++ V Sbjct: 9 VIGVVCIVLSLLICFAVTPLFNQSI-------SQKTEIVRVTKPIKIGEAITKDMVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + + + G ++ GD I K+ D + L L Sbjct: 62 VGGYNLPEDVVRHT------DTVIGKFASADLVPGDYIIASKIADTPAAENAYLYNLTGK 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ + ++ + G + D V +V + + L + VIA+ Sbjct: 116 KQAISVSVKSFAAGLSGKLISGDIVSIVAPDYKKQGVTVIPPELQYVEVIAVTADSGYDA 175 Query: 180 DHNI--------DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIADLNPS 229 D D + +T TL +TP Q+K L ++ L + L R + Sbjct: 176 DQRNNEPNPSSKQEDTEKELPATITLLVTPEQSKILAELEADGTLHVSLVYRGSKENAAK 235 Query: 230 SSEDSD 235 +E + Sbjct: 236 FTETQE 241 >gi|320008849|gb|ADW03699.1| Flp pilus assembly protein CpaB [Streptomyces flavogriseus ATCC 33331] Length = 234 Score = 76.5 bits (187), Expect = 4e-12, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 93/246 (37%), Gaps = 31/246 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ + V FA AG++++ V E ++ K ++A ++ Sbjct: 11 LLLLSVLCAFAAFAGVLSVISDVNSKVGPE----------VDAYRLKDNVAPYTALSAKQ 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 E V+ P+ + + + ++ E+DG + + G ++ + +V L Sbjct: 61 FEKVSMPKRWLSENAVTEI------DEVDGKIAVTELRAGSLMQSDMMVSSPE------L 108 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDH-- 181 G++ + I ++ V G I+PND V++ P +++SN +V+ + Sbjct: 109 RPGEQEIAIMIDAATGVAGKIRPNDKVNIYATFAAERDGEVPQSKIIVSNAKVLDVGELT 168 Query: 182 --NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDV 236 D+R T L + + + A+S A+ + L L + D Sbjct: 169 ALEPRKDDRNQAAEAVPITFALDTLDTQRVAYAESFAQHVRLALIAPGSDGVVRPGDRTY 228 Query: 237 WDVQEE 242 +++ Sbjct: 229 TLDKDK 234 >gi|228982437|ref|ZP_04142696.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407] gi|228776620|gb|EEM24928.1| hypothetical protein bthur0002_55700 [Bacillus thuringiensis Bt407] Length = 267 Score = 76.1 bits (186), Expect = 4e-12, Method: Composition-based stats. Identities = 51/268 (19%), Positives = 85/268 (31%), Gaps = 56/268 (20%) Query: 1 MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK ++ + I G L AG T+ + V D+ Sbjct: 1 MKTKQVAITIAQMGAVILFAGGFYYF-------------TQKQMEPTTVWQFNRDIPANT 47 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-- 117 +T L P + V GF + +++ G ++ G+ +KLVD+ Sbjct: 48 QITEGDLVKTTIPAQAVTKGF------ALSPKDIVGKYNNSKLVTGEYALKQKLVDKKNI 101 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------PTVTVV 170 + S L K R ++ I+ +GG +K D VD+V V + Sbjct: 102 DPFESMDLTK-YRKISLPITYIDGLGGNVKRGDKVDLVFVGEGEKAGEGSGKGFKYSKAF 160 Query: 171 LSNIRVIAI-------------------------DHNIDSDERVLVGSTATLELTPMQAK 205 L +I V + +I S ST TL +T QA+ Sbjct: 161 LQDILVYNVTTDDGFRYTDRSEGVKGDEAGDMQDGKDIQSGGEGGKLSTVTLAVTLDQAE 220 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSED 233 + A + +V R D + Sbjct: 221 QISARLKSGNIRIVGR-FDDSQNYDTAG 247 >gi|194366096|ref|YP_002028706.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia R551-3] gi|194348900|gb|ACF52023.1| Flp pilus assembly protein CpaB [Stenotrophomonas maltophilia R551-3] Length = 345 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 52/270 (19%), Positives = 82/270 (30%), Gaps = 52/270 (19%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KLTR+ + + G+ L+A + M P+ T + ++ A+ I V+ S L G Sbjct: 2 LKLTRIAAVALIGLAVLLALVAFMIGRKPNAPATVAPVAQSEAQAITVVESVARLPAGEP 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T N L G ++ + G + I +G I L G Sbjct: 62 ITANGLRLAQ--RTAPVAGAAT------SIASVVGKVPVQDIAEGTAISSSALAQ----G 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS-----LSERKPTVTVV----- 170 S L G+RA + + G I P D VDV + S Sbjct: 110 FSLQLRPGERALAVPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPGEAAQTRLLLSR 169 Query: 171 -------LSNIRVIAIDHNIDSDE-----------------------RVLVGSTATLELT 200 +I D ++ +A L + Sbjct: 170 LRVLSYGQQDIAPATSDAVASNEGDNRNDPRAADITGSGSSHTTSSETTQPARSAVLAVP 229 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A L+ KL L LR+ AD Sbjct: 230 VADANRLLLGAQQGKLFLALRNPADTGLPD 259 >gi|167772246|ref|ZP_02444299.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM 17241] gi|167665349|gb|EDS09479.1| hypothetical protein ANACOL_03621 [Anaerotruncus colihominis DSM 17241] Length = 281 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 86/229 (37%), Gaps = 26/229 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV ++ ++ ++P Q+ A+ + V+ + G +T ++++ V Sbjct: 9 VVGVICIMLSLLICFGLTPLFNQSLS----QKAEIVRVV---QPIRAGDEITESMVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + + + G + GD I KL D + L L Sbjct: 62 VGGYNLPEDVLR------QKESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGS 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 ++A ++ I + + G ++ D V V+ + + V L + +I++ Sbjct: 116 QQAISVSIKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 D +E + T TL ++P QAK L ++ + L L D Sbjct: 176 NTGAPADEEEDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDR 224 >gi|266619843|ref|ZP_06112778.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288868552|gb|EFD00851.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 283 Score = 76.1 bits (186), Expect = 5e-12, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 74/190 (38%), Gaps = 18/190 (9%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++ ++ G +T ++ V N+ I + +E+ G + Sbjct: 35 KSKVTLVRVTKEIRTGEQITDKMVTSVEAVGYNLPSNVIYKI------EEVVGKYANADL 88 Query: 103 LKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRS 159 KGD I KL D + L L RA ++ I +S + G ++ D V ++ Sbjct: 89 YKGDYILKSKLSDTPMLRNAYLNKLNGENRAISVSIKSFASGLSGKLEAGDIVSLIAADV 148 Query: 160 LSERKPTVTVVLSNIRVIAI------DHNIDS---DERVLVGSTATLELTPMQAKALVAA 210 S+R+ V L + +IA D N+ E + ST T+ +P Q++ L Sbjct: 149 GSQRETLVYPELQYVEIIATTGSSGSDQNVQERGNGEEEELASTITVLASPEQSRLLAEL 208 Query: 211 QSVAKLSLVL 220 + KL L Sbjct: 209 EQTGKLHAAL 218 >gi|225375669|ref|ZP_03752890.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM 16841] gi|225212526|gb|EEG94880.1| hypothetical protein ROSEINA2194_01294 [Roseburia inulinivorans DSM 16841] Length = 282 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 83/208 (39%), Gaps = 16/208 (7%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 ++ ++ ++ D+ G + +L+ V N+ + + ++ E Sbjct: 24 AVTPLVNAGLSQKTTIVRFVKDVKAGEEIKKGMLQEVEVGGYNLPENVLR------SITE 77 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPN 149 +G + + GD I EK+ D L L K+A ++ IS + + G +K Sbjct: 78 AEGKYLTADVYAGDYIVAEKVADEPAAENKYLYNLNGEKQAISITISSFAEGLSGKLKSG 137 Query: 150 DHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------DHNIDSDERVLVGSTATLELTPM 202 D V V+ L + + L + VIA+ + + +E + ST T+ + P Sbjct: 138 DIVSVIAPDYLGSGETVIPAELKYVEVIAVTAKSGYDANTQEQEEEKELPSTVTVLVRPE 197 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSS 230 Q++ L ++ ++ L L D ++ Sbjct: 198 QSRLLARLEAEGEIHLSLVYRGDSQKAA 225 >gi|218670668|ref|ZP_03520339.1| Flp pilus assembly protein CpaB [Rhizobium etli GR56] Length = 133 Score = 75.7 bits (185), Expect = 5e-12, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 2/102 (1%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A+ ++++ + G + L + +P G + E I Sbjct: 20 AEERTLVVAAKPMRFGDRIRSENLRAIPWPSNETPAGSFVSIEAVVG-NEAQPRYAMAAI 78 Query: 103 LKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVG 143 G+P+ K+ G LS+ L +G +A ++ ++ V Sbjct: 79 DPGEPVLSSKITGTGERATLSAALDQGMKAVSIRVNDVLGVA 120 >gi|17549310|ref|NP_522650.1| signal peptide protein [Ralstonia solanacearum GMI1000] gi|17431562|emb|CAD18240.1| probable flp pilus assembly cpab; signal peptide protein [Ralstonia solanacearum GMI1000] Length = 208 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 33/153 (21%), Positives = 62/153 (40%), Gaps = 15/153 (9%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 V EN V+++ L G +T + + + P +V+ Sbjct: 30 RQPVPAAAQQNENGKTLYPVVVTVKPLEAGKPITADQVGVESLPIN--PADAFSEVN--- 84 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ G VPI G P+ +L + GL+ + G+RA + + VG + P Sbjct: 85 ---KVVGREPIVPIGIGVPLIGSQL----SSGLALQVALGQRAVAITVDEVVGVGNRVMP 137 Query: 149 NDHVDVVMVRSLSERK---PTVTVVLSNIRVIA 178 D+VDV +V ++ ++L ++RV+A Sbjct: 138 GDYVDVFLVLRKDGQEIDDSKAHLLLPHLRVLA 170 >gi|310830505|ref|YP_003965606.1| hypothetical protein PPSC2_p0144 [Paenibacillus polymyxa SC2] gi|309249972|gb|ADO59538.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 273 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 48/254 (18%), Positives = 87/254 (34%), Gaps = 52/254 (20%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + + V + DL V +T ++ V+ P+ V F + ++ V + Sbjct: 32 QPVKVYVFNKDLNVNHQITAADIKEVSVPQSGVTQDFALEP------KQFLNKYVGTEVY 85 Query: 104 KGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G I +++ D+G + S L K R ++ IS GG +K D VD+V Sbjct: 86 AGSFIYKKQIKDKGQLDPFKSMDLTK-YRKISIPISYVEGFGGNVKRGDAVDLVFTGVGK 144 Query: 162 ERK--------PTVTVVLSNIRV------------------IA---------IDHNIDSD 186 ++ L N+ + + ID + +SD Sbjct: 145 KKDDKGTEQSFQYSKAFLQNVLIYNVTTSDGFEFKDHSTTDLTKTSGQSGEKIDTSANSD 204 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED---SDVWDVQEEG 243 E + TL +T QA+ + A + + LV R AD + D V Sbjct: 205 ELAV----VTLAVTLDQAEEITARMNAGNVRLVSR-FADNESYETLGFVLGDYSKVYSAP 259 Query: 244 KEIQIIKAGVIVNK 257 + + + N+ Sbjct: 260 ANAETGRGTINANQ 273 >gi|329935283|ref|ZP_08285249.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045] gi|329305106|gb|EGG48965.1| hypothetical protein SGM_6766 [Streptomyces griseoaurantiacus M045] Length = 237 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 45/252 (17%), Positives = 96/252 (38%), Gaps = 32/252 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +V+S + AL A + ++ + + +T + D+A ++ Sbjct: 6 RRGVILLVLSALCALGAFAGVLSVIRDVNSKVGPEVTAYRLR--------NDIAPYKELS 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + V+ PE + + D+ + + G + + KG ++ + +V R Sbjct: 58 ADQFQRVSMPERWLPRTAVTDLAR------IRGKIAVTRLEKGSLLQSDMIVARPA---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVI--- 177 L G++ + I ++ V G I P V++ + K V++ N RV+ Sbjct: 108 --LAAGQQEIAIMIDAATGVAGKIDPGSRVNIYATFKAENDKGKDQSKVIVENARVLDVG 165 Query: 178 ---AIDHNIDSDER---VLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSS 230 A+D + SDER T L A+ + A+S A+ + L L + Sbjct: 166 KITALDPDQSSDERRRSATQAVPITFALGTADAQRVAYAESFAEHVRLALVAGGSRQQVP 225 Query: 231 SEDSDVWDVQEE 242 D +++ Sbjct: 226 PGDRTYTLDEDK 237 >gi|302553849|ref|ZP_07306191.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM 40736] gi|302471467|gb|EFL34560.1| flp pilus assembly protein CpaB [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 75.7 bits (185), Expect = 6e-12, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 87/232 (37%), Gaps = 30/232 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S V AL A + ++S + +T K ++ + Sbjct: 6 RRGVILLLLSVVCALGAFAGVLSVISDVKSKVGPEVTA--------YRLKSEVPPYTTLR 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 E + PE + D + D ++E+ G + + G ++ + +V R Sbjct: 58 TGQFEKIKMPERWLSDNAVTD------LREIQGKIAVTTLRAGSLLQSDMIVRRPA---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P V+V ++++N +V+ + Sbjct: 108 --LQPGQQEVAIMIDAATGVAGKITPGASVNVYATFEGAREGDPDQSKIIVTNAKVLDVG 165 Query: 181 -------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIA 224 + ++ G T L+ + A+ + A+S A ++ L L + Sbjct: 166 ELTALEPDESNRTQQPTDGVPITFALSALDAQRITYAESFAKRVRLALVAPG 217 >gi|254762576|ref|ZP_05214416.1| Flp pilus assembly protein CpaB [Bacillus anthracis str. Australia 94] Length = 201 Score = 75.7 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 34/185 (18%), Positives = 69/185 (37%), Gaps = 19/185 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ ++ V L A +A H EN K ++++ D+ Sbjct: 1 MKPSKFQKKQIAAV-GLAAATVAGIYGYNHFA------VENAVKPTKIVVAAKDIPAHTE 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 + ++L P + + + +E+ G PI + + K+V + Sbjct: 54 IKEDMLVERTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEE 108 Query: 119 GGLSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSN 173 S++ L G+ A + + ++ G I PN +VD+ +V+ K + Sbjct: 109 LPDSAILNLKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQR 168 Query: 174 IRVIA 178 +RV A Sbjct: 169 VRVTA 173 >gi|210629922|ref|ZP_03296169.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279] gi|210160739|gb|EEA91710.1| hypothetical protein COLSTE_00052 [Collinsella stercoris DSM 13279] Length = 258 Score = 75.3 bits (184), Expect = 7e-12, Method: Composition-based stats. Identities = 35/203 (17%), Positives = 75/203 (36%), Gaps = 18/203 (8%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQE 92 E + + + ++V ++ D+ G + + + + ++ + Sbjct: 42 ARRETLEQYGGELVSVCVATRDIDPGEQIDDGNAVVTEWVSTLLPAEAVT------SLAD 95 Query: 93 LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 + G I P+ R + + +P+GK A ++ AVGG+++ D V Sbjct: 96 VAGRTATARIPAHAPLSEAYFEQRES---AVDVPRGKVAVSVASDAEHAVGGVLERGDLV 152 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 DV + K L++ VI V TL + P + L+AA S Sbjct: 153 DVYVQGDALADK------LTDAEVIDTSALASGSGDVQW---VTLAVRPSAVRELLAAAS 203 Query: 213 VAKLSLVLRSIADLNPSSSEDSD 235 ++L + + + S+D++ Sbjct: 204 RGMVTLAVPAEQEDGDRDSDDAE 226 >gi|302542852|ref|ZP_07295194.1| flp pilus assembly protein CpaB [Streptomyces hygroscopicus ATCC 53653] gi|302460470|gb|EFL23563.1| flp pilus assembly protein CpaB [Streptomyces himastatinicus ATCC 53653] Length = 234 Score = 75.3 bits (184), Expect = 8e-12, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 90/251 (35%), Gaps = 26/251 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+++ + L AG ++S + +V E A + KG++ Sbjct: 1 MNSRQRRGVILLVLSVLCAGGAFAGVLSVVNDVESKVGPETTAYKL-----KGNVDAYEA 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + E V+ PE V + D + E+ G + + +G ++ + + +R Sbjct: 56 LDAGDFEKVSMPERWVPSTAVTD------LSEVRGRIAATRLSQGSLLQTDMVANRPA-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVIA 178 L G++ + I ++ V G I P V++ + +++ + VI Sbjct: 108 ----LKAGQQEIAIMIDAATGVAGKITPGAKVNIYATFEGKAQGEASVSKLIVDDAEVID 163 Query: 179 IDH----NIDSDERVLVGSTA--TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSS 231 + D D+ V T L A+ + A+S A + L L P S Sbjct: 164 VGKLSALKPDEDDERRVDQAVPITFALDTKDAQRVAYAESFASHVRLALIGPGADAPVSP 223 Query: 232 EDSDVWDVQEE 242 D ++ Sbjct: 224 RDRTYTLGGDK 234 >gi|266625537|ref|ZP_06118472.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288862557|gb|EFC94855.1| putative Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 231 Score = 75.3 bits (184), Expect = 9e-12, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 76/188 (40%), Gaps = 17/188 (9%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K I ++ D+ +G VT +++ V N+ + + + + G ++ Sbjct: 1 KKIEIVRVVKDIKIGDKVTGDMVRSVEVGSLNLPSEVMKN------KENVIGKYASADMV 54 Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSL 160 GD I K+ D + L L K+A ++ + ++ + G +K D V V+ Sbjct: 55 PGDYIINSKVADEPAAENAYLYNLSGEKQAISVSVKSFATGLSGKLKSGDIVSVIAPDYQ 114 Query: 161 SERKPTVTVVLSNIRVIAI------DHNIDSD--ERVLVGSTATLELTPMQAKALVAAQS 212 + + + L + VIA+ D N + E + ST TL TP Q++ L + Sbjct: 115 KQGETVIPPELKYVEVIAVTAGSGYDANTGEEDPEEKELPSTVTLLATPEQSRILAMMEK 174 Query: 213 VAKLSLVL 220 L + L Sbjct: 175 DGNLHISL 182 >gi|167769285|ref|ZP_02441338.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM 17241] gi|167668253|gb|EDS12383.1| hypothetical protein ANACOL_00608 [Anaerotruncus colihominis DSM 17241] Length = 281 Score = 74.9 bits (183), Expect = 9e-12, Method: Composition-based stats. Identities = 41/233 (17%), Positives = 88/233 (37%), Gaps = 26/233 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV ++ ++ ++P Q+ A+ + V+ + G +T ++++ V Sbjct: 9 VVGVICILLSLLICFGLTPLFNQSVS----QKAEIVRVV---QPIRAGDEITESMVQIVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 N+ + + + G + GD I KL D + L L Sbjct: 62 VGGYNLPEDVLR------QKESAVGKYATADLAVGDYIIPSKLSDAPAAENAYLYSLDGS 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 ++A ++ I + + G ++ D V V+ + + V L + +I++ Sbjct: 116 QQAISVSIKSFAEGLSGKLQSGDIVSVIAPDYKQQGQTVVPAELQYVEIISVTASSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 +D ++ + T TL ++P QAK L ++ + L L D + Sbjct: 176 NTGEPVDEEDDKELPDTVTLLVSPEQAKVLAELEAEGTIHLALVYRGDRENAD 228 >gi|256785519|ref|ZP_05523950.1| hypothetical protein SlivT_13601 [Streptomyces lividans TK24] gi|289769415|ref|ZP_06528793.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24] gi|289699614|gb|EFD67043.1| flp pilus assembly protein CpaB [Streptomyces lividans TK24] Length = 235 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 82/232 (35%), Gaps = 30/232 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S + AL A + +++ + +T K D+ + Sbjct: 6 RRGIILLILSVLCALGAFAGVLSVINDVKSKVGPEVTAYRVK--------SDIEPYTELG 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 E V PE + + + D+ + + G + + G ++ + +VD Sbjct: 58 ATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTDMIVDTPA---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P V+V ++++ +VI + Sbjct: 108 --LRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKIIVTGAKVIDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLRSIA 224 D T L+ + A+ + A+S A ++ L L + Sbjct: 166 ELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALVAPG 217 >gi|256827719|ref|YP_003151678.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641] gi|256583862|gb|ACU94996.1| SAF domain-containing protein [Cryptobacterium curtum DSM 15641] Length = 210 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 80/223 (35%), Gaps = 23/223 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTE--EVITENPAKFINVLISKGDLAVG 58 M+ ++ I + + A Q + E ++ + V ++ D+A G Sbjct: 1 MRRKGMLAISLLCGLICALCVSAYLQAEQARFQAQRDEALSRYGGDQVQVCVATRDIAPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + +E ++ E + + +++G P+ G+ I + D Sbjct: 61 ETYSSANVELRSWIAELSPRQAV------GTVADIEGKQAAGPVSSGEVITTVRCADN-- 112 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 + +P GK+A ++ + S AVGG ++ V V S L + +V+A Sbjct: 113 -TAAIQVPAGKQAVSIAVESSQAVGGSLEAG-----VQVSVYSASSSGSVAYLCDAQVLA 166 Query: 179 IDHNIDSDERVLVGSTATLELTPMQA-KALVAAQSVAKLSLVL 220 TL + P Q + + AA+ + + L L Sbjct: 167 AGTYSAGRMW------VTLAVDPAQVQEVIAAARDSSSVYLTL 203 >gi|209809169|ref|YP_002264707.1| putative Flp pilus assembly protein [Aliivibrio salmonicida LFI1238] gi|208010731|emb|CAQ81122.1| putative Flp pilus assembly protein [Aliivibrio salmonicida LFI1238] Length = 260 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 95/230 (41%), Gaps = 23/230 (10%) Query: 1 MKLTRLMGIVV-SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK+ ++ + V + +F L ++ L +P +Q+ + + I V K ++ + Sbjct: 1 MKVKLIIVLAVMTILFGLYGLGESLSLFTPQKIQSAKEVK------IKVWRLKKEVNMSE 54 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL-VDRGN 118 + ++L PE+ + + + G + + + KG I + L + Sbjct: 55 EINRHMLALELMPEQKANALSFSEDVT---LDLIPGTVFKSELKKGTYISMSDLITPEED 111 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV---------TV 169 G + ++ + + + SS GG+I+ VD++ + S + T Sbjct: 112 GYIDYVIAPERIPFPITVDPSSITGGVIRSGTIVDILALTSPQNINNSTRNVKKSVSITP 171 Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTA---TLELTPMQAKALVAAQSVAKL 216 + + ++V+ + H++ R V + LELT QA L+ A+ +A + Sbjct: 172 IFTGVKVLQVKHSVIKGNRNDVETEVISLILELTREQATKLIVAKKIADI 221 >gi|149909548|ref|ZP_01898202.1| tungstate-binding protein precursor [Moritella sp. PE36] gi|149807453|gb|EDM67404.1| tungstate-binding protein precursor [Moritella sp. PE36] Length = 267 Score = 74.9 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 84/234 (35%), Gaps = 24/234 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ I A+V G+ + +P +T+ I V + D+ G + Sbjct: 1 MKTKLIIAIAT---LAIVIGLYGLLTEAPPATETQITEIVVEENKIKVWFLRNDVKRGQL 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 V + PE I D N + G + + + E + + Sbjct: 58 VERSDFSIRQLPESEANALGIADESNMNFDK---GSVYNRELTVQSAVFPEYITATNDLE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165 + +L + + + + +GG+I +VDV+ + S + Sbjct: 115 YVELVLAENRVPFVIKVDPDVIIGGVISHGSYVDVLALASGGSKISFNSDELSQPKFKSI 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKL 216 +V+ VL ++V+ I S R TAT LELT Q L A+ +A L Sbjct: 175 SVSPVLIGVKVLTIQQGAMSGGRNNSDVTATVLVLELTRKQVAKLTVAKRIADL 228 >gi|221633004|ref|YP_002522229.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum DSM 5159] gi|221156453|gb|ACM05580.1| putative membrane fimbriae assembly protein [Thermomicrobium roseum DSM 5159] Length = 331 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 11/161 (6%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + ++ V A VA ++ + + T P + V + D+ G V Sbjct: 1 MRRAGRLYLLAGFVLATVAVVLGIIALQRQREPVMPTQTTTPTTQVVV--AARDVRAGSV 58 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + V +V G ++ G++V ++ G I L LV Sbjct: 59 LTSEDVTVVETDPASVAPG------TARQPDQVVGLVVAGDLVAGQRILLANLVLP---S 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 +S+ + GKRA + + +A+GG+++PND +D++ L Sbjct: 110 VSNTVQPGKRAVAIPVDRINALGGLLQPNDSIDLIYAGRLD 150 Score = 40.6 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 46/258 (17%), Positives = 82/258 (31%), Gaps = 51/258 (19%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL-------------EWVAFPE 73 V P + + ++++ GDL G + L VA P Sbjct: 67 VETDPASVAPGTARQPDQVVGLVVA-GDLVAGQRILLANLVLPSVSNTVQPGKRAVAIPV 125 Query: 74 ENVFDGFIDDVHQPNAMQEL--DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131 + + + + QPN +L G L V IL +P+ +L D G P Sbjct: 126 DRI--NALGGLLQPNDSIDLIYAGRLDLVRILPTEPL---ELADSAQGFSP---PPESVK 177 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----------D 180 S SS P + V++ E +P +++ N+R++ + Sbjct: 178 LPEPGSGSSQSRRYPYPGEPGSRVVISDTGEGQPITKIIVQNLRILQVIAGTSVVVRSPG 237 Query: 181 HNIDSDERVLVGST-------ATL--------ELTPMQAKALV-AAQSVAKLSLVLRSIA 224 T ATL E+ P QA+ + + ++LR+ Sbjct: 238 QARSELTSTEPTRTPMPTANEATLPPVDLLIVEVDPEQAELISFLLDQNVRYQVILRARG 297 Query: 225 DLNPSSSEDSDVWDVQEE 242 D P ++ + E Sbjct: 298 DAQPVQTDGVTYDRLVER 315 >gi|297192381|ref|ZP_06909779.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151331|gb|EFH31098.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 237 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 90/240 (37%), Gaps = 34/240 (14%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ + V A AG++ + V E K D+A + Sbjct: 11 LILLSVVCGIAAFAGVLTVIADVNSKVGPETTAYRV----------KSDIAPYTPLEAGQ 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 E V+ PE + + D + L G + + G ++ + +V + L Sbjct: 61 FEKVSIPERWLSRSAVTD------LGVLRGKIAVTELRSGSLLQSDMIVQKPE------L 108 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAIDHNI 183 G++ + I ++ V G I+P + V++ + T ++++N +VI + Sbjct: 109 ESGQQEIAIMIDAATGVAGKIRPGNLVNIFATFAAQNDSGTDQSRLIVANAKVIDVGELT 168 Query: 184 DSDERVLVGSTA-------TLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235 D R STA T L A+ + A+S A+ + L L + D +P++ D Sbjct: 169 ALDRRSGDRSTAPREAVPITFALNTADAQRVAYAESFAEHVRLAL--LPDGSPTTLRPGD 226 >gi|296131921|ref|YP_003639168.1| SAF domain protein [Thermincola sp. JR] gi|296030499|gb|ADG81267.1| SAF domain protein [Thermincola potens JR] Length = 204 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 33/181 (18%), Positives = 74/181 (40%), Gaps = 23/181 (12%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ +++S + + A + + +V + + + + ++ + D+ + Sbjct: 4 KKIGIIFVILSILLSFGAAYLFLNMV--------QKTEKTMGETVQIITASKDVEAYTPL 55 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + L + P + + F+ + +E+ G + VP+ K D I + + Sbjct: 56 TRDKLSYTEIPRKYLNGSFLTNE------KEVLGKVTLVPMAKNDIITRSMIKKVDD--- 106 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IAI 179 LPK R + I+P D VD++ +L ++ V+ S+I V IA+ Sbjct: 107 ---LPKEVRIVQLR-PPVVFDSKEIEPGDRVDIIGTFALDNKQLITQVIQSDIIVHDIAM 162 Query: 180 D 180 D Sbjct: 163 D 163 >gi|295395660|ref|ZP_06805852.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC 49030] gi|294971476|gb|EFG47359.1| flp pilus assembly protein CpaB [Brevibacterium mcbrellneri ATCC 49030] Length = 259 Score = 74.5 bits (182), Expect = 1e-11, Method: Composition-based stats. Identities = 35/223 (15%), Positives = 78/223 (34%), Gaps = 35/223 (15%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 G+ ++A + +V V + ++ V ++K D+ + ++LE P Sbjct: 8 GLLLMIAATLLAIMVFIAVVVYVQNVSSKVGPTTEVYVAKEDITAFQPIEQDMLETKTVP 67 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + + + +++++ G V I G I+ + + +S + G+R Sbjct: 68 NRYITEDMVT------SLEQVAGQKASVKISAGSFIQTDAIEP------ASSIEDGQREI 115 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------------VLSNIRVIA 178 ++ + V G + P D VDVV + + V+SN V++ Sbjct: 116 SITFVGDAGVSGRVSPGDKVDVVASFARARENDQGETAYKRADIPYNVSGIVVSNATVVS 175 Query: 179 IDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQS 212 + D T ++ +A L A++ Sbjct: 176 VGQPVDPNAVVGAADQSGAEAEAVAVTFAVSVEEAGRLSYAEA 218 >gi|239929205|ref|ZP_04686158.1| hypothetical protein SghaA1_13346 [Streptomyces ghanaensis ATCC 14672] Length = 235 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 79/208 (37%), Gaps = 23/208 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K ++A ++ E + PE + + + D ++E+ G + Sbjct: 33 VKSKVGPEVTAYRLKTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +VD+ L G++ + I ++ V G I P V+V Sbjct: 87 AVTTLREGSLLQSDMVVDQPA------LQPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140 Query: 158 RSLSERKPT--VTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 ++++N +V+ + D R T L+ + A+ + Sbjct: 141 FEGEREGAAAQSKIIVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRIT 200 Query: 209 AAQSVA-KLSLVLRSI-ADLNPSSSEDS 234 A+S A ++ L L + D + S+ + Sbjct: 201 YAESFAQRVRLALVAPGGDTSVPDSQRT 228 >gi|291437538|ref|ZP_06576928.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340433|gb|EFE67389.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 203 Score = 74.5 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 34/194 (17%), Positives = 77/194 (39%), Gaps = 23/194 (11%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K ++A ++ E + PE + + + D ++E+ G + + +G ++ + Sbjct: 15 KTNVAPYSTLSAGQFEKIKMPERWLSENAVTD------LREIRGKIAVTTLREGSLLQSD 68 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTV 169 +VD+ L G++ + I ++ V G I P V+V + Sbjct: 69 MVVDQPA------LQPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGEREGAAAQSKI 122 Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221 +++N +V+ + D R T L+ + A+ + A+S A ++ L L Sbjct: 123 IVTNAKVLDVGRLTALEPDEEDRGRRPTDAVPITFALSTIDAQRITYAESFAQRVRLALV 182 Query: 222 SI-ADLNPSSSEDS 234 + D + S+ + Sbjct: 183 APGGDTSVPDSQRT 196 >gi|221195348|ref|ZP_03568403.1| SAF domain protein [Atopobium rimae ATCC 49626] gi|221184535|gb|EEE16927.1| SAF domain protein [Atopobium rimae ATCC 49626] Length = 262 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 83/216 (38%), Gaps = 24/216 (11%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTE----EVITENPAKFINVLISKGDLAVGMVVTPN 64 V+SG AL+A + + + + E EVI + +N++++ + G ++ + Sbjct: 7 FVLSGACALLAVLCCIVYGNQIKAEAEQSRAEVIERYGGEVVNLVVATKPIEAGDTISSS 66 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + ++ + +G + ++ G V +PI G P+ + Sbjct: 67 NTQVKSWVSDLAPEGSFTNA------DDIMGKQVTIPISAGTPLTKLNFRTNET---TVT 117 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID 184 +PKG ++ + + G + + + R + + L D Sbjct: 118 VPKGLVGISISHGEKTGLVGKVAAGTTLAAYEMTDHGIRLLSTQITL----------LSD 167 Query: 185 SDERVLVGST-ATLELTPMQAKALVAAQSVAKLSLV 219 + E V + ST T+ + P ++++A++ L LV Sbjct: 168 TGESVYISSTPLTVGVLPKDMTSILSAEAKGTLRLV 203 >gi|116671413|ref|YP_832346.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24] gi|116611522|gb|ABK04246.1| hypothetical protein Arth_2867 [Arthrobacter sp. FB24] Length = 213 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 48/219 (21%), Positives = 85/219 (38%), Gaps = 27/219 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +VV+ + AGI +L T PA + L + DLA G ++ N + Sbjct: 14 LVVALLLCAAAGIAVQQL------------TPAPAHTVTALATARDLAAGTALSGNEVVP 61 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V P V G + DV + G + P+ KG I +L+ G L + G Sbjct: 62 VKVPPGMVPSGAVADVSS------IQGKQLAAPLRKGQLISDTQLLGPG---LLAGTKPG 112 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAI-DHNIDSD 186 A + ++ S++ ++ P V++VM + V+ + + V+ + Sbjct: 113 SAAVPLRMADPSSIQ-LVAPGQLVNIVMTNGTDFGKTAESQVLAAAVPVLWTSGQGGQTG 171 Query: 187 ERVLVGST---ATLELTPMQAKALVAAQSVAKLSLVLRS 222 + + G T + P QA+ L + + KL VL Sbjct: 172 QWLGTGETEGLIVVAADPDQARRLAGSSTQGKLFFVLVG 210 >gi|296271147|ref|YP_003653779.1| SAF domain-containing protein [Thermobispora bispora DSM 43833] gi|296093934|gb|ADG89886.1| SAF domain protein [Thermobispora bispora DSM 43833] Length = 212 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 43/193 (22%), Positives = 76/193 (39%), Gaps = 30/193 (15%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 P + + VL + DL G ++ + + V P + + DG + + G +V Sbjct: 32 APPRGVPVLAAARDLP-GGRLSASDVTVVRLPPDALPDGVLRPGTP------MAGRVVAG 84 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS- 159 P+ +G+PI +L+ G + +G A + I+ + V ++ P D VDV+ Sbjct: 85 PMRRGEPITDVRLLGPG---ILRAQGQGLVATPVRIADAR-VAELLSPGDVVDVLAAFDG 140 Query: 160 -------------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKA 206 P V +RV+A D + +LV L T QA Sbjct: 141 AALGGAYPDDAASGGTAAPASAPVARQVRVLARPPGGDGEGALLV-----LATTVDQAAR 195 Query: 207 LVAAQSVAKLSLV 219 L AQ+ +L++ Sbjct: 196 LAHAQAHGRLAVA 208 >gi|237733157|ref|ZP_04563638.1| predicted protein [Mollicutes bacterium D7] gi|229383701|gb|EEO33792.1| predicted protein [Coprobacillus sp. D7] Length = 229 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 41/222 (18%), Positives = 87/222 (39%), Gaps = 37/222 (16%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K L+ I+V+G+ +++G + M V VL++ D+ + Sbjct: 6 KRISLIIIIVAGL--ILSGSLFMIFVGN---------------TTEVLVATQDVKANTKI 48 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 ++ ++ D ++ ++ +++ G + KG I + Sbjct: 49 KESMFTTERVDTASLPDNYL----SADSAKDVVGYYTYIGFTKGSVISKSNIATSAKKA- 103 Query: 122 SSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--IA 178 S + KGK T+ ++ + I+ D V++++ + V NI V I Sbjct: 104 SGAIEKGKTLLTISAENLPTG----IQSGDKVNIIIGANTDSGNKVVLT-YQNIDVSNIY 158 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +D DE + G + +TP Q++ +V A+ +LS+ L Sbjct: 159 VD-----DEGSITGLEVS--VTPEQSQKIVYAKLNGELSISL 193 >gi|260892674|ref|YP_003238771.1| SAF domain protein [Ammonifex degensii KC4] gi|260864815|gb|ACX51921.1| SAF domain protein [Ammonifex degensii KC4] Length = 214 Score = 74.2 bits (181), Expect = 2e-11, Method: Composition-based stats. Identities = 48/239 (20%), Positives = 88/239 (36%), Gaps = 42/239 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + ++ + AG +A L + +T VL++K D+ Sbjct: 1 MTRQKFFFLMAVLAGLVAAGSLAWLLSAFLPQKT-------------VLVAKSDVPARGP 47 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR---G 117 VT +E V+ P+ + + + EL G + R I G +R L + G Sbjct: 48 VTE--VEAVSLPKAGLPPDAVTE------RGELAGKVARGFIPAGTVLRRAMLQPKWAAG 99 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G + + G R + ++ + VGG + D +DV +VR +V +++ V Sbjct: 100 AAGALAEIGPGYRMLALPLTADTTVGGCVASGDRIDVYLVRGGR-----AELVAADVLVF 154 Query: 178 A------------IDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVLRSI 223 + D + + + P +A+ LV+A KL VLR + Sbjct: 155 SGPGVPSREGKKGFGALTGGDREQEKRDSLVVVVRPDEAERLVSALGGDGKLVAVLRPL 213 >gi|190574778|ref|YP_001972623.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas maltophilia K279a] gi|190012700|emb|CAQ46328.1| putative transmembrane fimbriae assembly protein [Stenotrophomonas maltophilia K279a] Length = 345 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 85/270 (31%), Gaps = 52/270 (19%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KLTR+ + + G+ L+A I M T + ++ A+ I V+ + L G Sbjct: 2 LKLTRIAAVALIGLAVLLAVIALMIGRKQAAPATVAPVAQSEAQAITVVEAVARLPAGEP 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++ N + G ++ + G + I +G I L G Sbjct: 62 ISANGVRLAQ--RTTPVAGAAT------SISAVVGKVPVQDIAEGTAISSGALAQ----G 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-----------------VRSLSER 163 S L G+RA + + G I P D VDV + R L R Sbjct: 110 FSLQLRPGERALAIPVDELVGAGNRILPGDFVDVFLNLRNAQPNASGPAEAAQTRLLLSR 169 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDE-----------------------RVLVGSTATLELT 200 ++ +I + D ++ +A L + Sbjct: 170 LRVLSYGQQDIAPVTGDAVAGNEGDTRNDPRAADITGNGSNHGSGNETTQPARSAVLAVP 229 Query: 201 PMQAKALVAAQSVAKLSLVLRSIADLNPSS 230 A L+ KL L LR+ AD Sbjct: 230 VADANRLLLGAQQGKLFLALRNPADTGQPD 259 >gi|83589202|ref|YP_429211.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] gi|83572116|gb|ABC18668.1| Flp pilus assembly CpaB [Moorella thermoacetica ATCC 39073] Length = 229 Score = 73.8 bits (180), Expect = 2e-11, Method: Composition-based stats. Identities = 36/228 (15%), Positives = 75/228 (32%), Gaps = 46/228 (20%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 ++ I+ A+ +GI R +S H V++ ++ + P Sbjct: 20 AILAIIFGLAVAVASGIYYQRYISTHQA------------MTQVIVPAHNINAYTQIKPG 67 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 L W P V G +L G + + +G+ +RLE++ + Sbjct: 68 DLTWRQVPVGAVEPGTARKP------DDLVGKVALAELYQGEQVRLERVGEVST------ 115 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA------ 178 K+ ++I ++ + GG P D VDV + + ++ SN R++ Sbjct: 116 --DDKQVVAVNIDLARSGGGYFSPGDLVDVYFAETENVPGA---ILASNARLLQLVDAQG 170 Query: 179 -----------IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 + S + + A L ++P + + Sbjct: 171 NPITLNQQGGLLQQASQSAQAPRTPAVAVLAVSPADIPQVTRGAANGS 218 >gi|239979686|ref|ZP_04702210.1| hypothetical protein SalbJ_09627 [Streptomyces albus J1074] Length = 235 Score = 73.8 bits (180), Expect = 3e-11, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A ++ + E V+ PE + + D ++++ G + Sbjct: 33 VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +V R + G++ + I ++ V G I P V++ Sbjct: 87 AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 140 Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 K +++ N RVI + D + + T L+ A+ + Sbjct: 141 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 200 Query: 209 AAQS-VAKLSLVLRSIA-DLNPSSSEDSDVWDVQ 240 A+S A + L L D + + D Sbjct: 201 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 234 >gi|291451551|ref|ZP_06590941.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291354500|gb|EFE81402.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 210 Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 23/214 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A ++ + E V+ PE + + D ++++ G + Sbjct: 8 VNAKVGPEVPAYRLKTDVAPYKELSADQFEKVSMPERWRSENAVTD------LRQIRGKI 61 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +V R + G++ + I ++ V G I P V++ Sbjct: 62 AVTTLRQGSLLQTDMIVARPE------VRPGEQEIAIMIDAATGVAGKITPGSDVNIYAT 115 Query: 158 RSL--SERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 K +++ N RVI + D + + T L+ A+ + Sbjct: 116 FKAENDGEKDQSRIIVENARVIDVGKLTALEPDQDDRRRQPVDAVPITFALSAADAQRVA 175 Query: 209 AAQS-VAKLSLVLRSIA-DLNPSSSEDSDVWDVQ 240 A+S A + L L D + + D Sbjct: 176 YAESFAAHVRLALVGPGSDEGLRRGDRTYTLDED 209 >gi|290957849|ref|YP_003489031.1| hypothetical protein SCAB_33831 [Streptomyces scabiei 87.22] gi|260647375|emb|CBG70480.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 238 Score = 73.4 bits (179), Expect = 3e-11, Method: Composition-based stats. Identities = 47/255 (18%), Positives = 94/255 (36%), Gaps = 30/255 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + G+V+ + AL A ++S + + KGD+A Sbjct: 1 MNSRQRRGVVLLVLSALCALAAFAGVLS-----VIRDVNAKVGPEVTAYRLKGDIAPYKE 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + E ++ PE + + D + E+ G + + KG ++ + +VDR Sbjct: 56 LTADQFERISMPERWLSGTAVTD------LSEIRGKIAVNQLRKGSLLQSDMIVDRPE-- 107 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR---SLSERKPTVTVVLSNIRVI 177 L G++ + I S+ V G I P V++ +K T +++++ RVI Sbjct: 108 ----LEAGQQEIAILIDASTGVAGKINPGSRVNIYATFEEKDSDSKKDTSKLMVTDARVI 163 Query: 178 AIDH---------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLN 227 + + D T L A+ + A+S A+ + L L + Sbjct: 164 DVGKLTPLESGQSSSDRRRTATEAVPITFALDTADAQRVAFAESFAEHVRLALVGGGEAT 223 Query: 228 PSSSEDSDVWDVQEE 242 +D +++ Sbjct: 224 VVVPDDRSYTLDEDK 238 >gi|333024721|ref|ZP_08452785.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071] gi|332744573|gb|EGJ75014.1| putative flp pilus assembly protein CpaB [Streptomyces sp. Tu6071] Length = 236 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 43/250 (17%), Positives = 95/250 (38%), Gaps = 30/250 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +V+S V AL+A + + +V + + + T K D+A + Sbjct: 6 RRGVVLMVLSAVCALIALVGVLGVVRNVNSKVGDEKTAYRLKD--------DIAPYKSLD 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + E V+ PE + D + + L G + + KG ++ + +V+R Sbjct: 58 ASQFEKVSVPERWLPDTAVTR------LGALRGKIAVTTLHKGSLLQDDMIVNRPA---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P V++ +K +++ +V+ + Sbjct: 108 --LRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232 D+ R T L A+ + A+S A + L L + P+++ Sbjct: 166 KLTPFDQNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAG 225 Query: 233 DSDVWDVQEE 242 + + ++ Sbjct: 226 PDRTYTLDKD 235 >gi|119963620|ref|YP_948619.1| Flp pilus assembly protein [Arthrobacter aurescens TC1] gi|119950479|gb|ABM09390.1| putative Flp pilus assembly protein CpaB family [Arthrobacter aurescens TC1] Length = 248 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 96/239 (40%), Gaps = 32/239 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK TRL+G +V+ V A+V ++ + VQ + + + ++VL+ + + G Sbjct: 1 MK-TRLLGGIVAVVLAIVGTLLLVTY-----VQAADARAQKDLQPVDVLVIQSQVPEGAD 54 Query: 61 VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + + ++ + P +V +G + ++ ++G + ++ G+ + +LVD + Sbjct: 55 LQQIKSAVKLASLPAASVPNGALK------SLSGMEGKVAGAELMPGEALLGNRLVDPNS 108 Query: 119 GGL--SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---VTVVLSN 173 S +P G + ++ + VGG + D V VV++ + + T +V Sbjct: 109 LAAPGSVPVPDGLQEVSVQLDAQRVVGGRLAAGDTVGVVVLVGENGQSDTDASAQLVFHK 168 Query: 174 IRVIAIDHNIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219 + V ++ + S+ TL + + A +V + L Sbjct: 169 VLVTSVQRATARNSNTAQASSEQANTQLPEGSFIVTLARSDVDATKIVYGAKYGDIWLT 227 >gi|302387867|ref|YP_003823689.1| SAF domain protein [Clostridium saccharolyticum WM1] gi|302198495|gb|ADL06066.1| SAF domain protein [Clostridium saccharolyticum WM1] Length = 283 Score = 73.0 bits (178), Expect = 4e-11, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 21/192 (10%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++ ++ G +T ++ V N+ I +++ G + Sbjct: 35 QSKVELVRVTTEIKKGDEITAGMITAVETGGYNLPSDVI------YKKEDVIGKFANADL 88 Query: 103 LKGDPIRLEKLVDRG---NGGLSSLLPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVR 158 KGD I KL D N LS L RA ++ I ++ + G ++ D V ++ Sbjct: 89 YKGDYILKSKLSDTPQLKNEYLSG-LDGTNRAISVTIKSFAAGLSGKLERGDIVSLIASD 147 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSD----------ERVLVGSTATLELTPMQAKALV 208 RK + L + +IA + +D E + ST T+ +TP QA+ L Sbjct: 148 VGEARKTLILDELQYVEIIATTDSSGNDRNIQEQPKDNEDTELASTITVLVTPQQARLLA 207 Query: 209 AAQSVAKLSLVL 220 + KL L Sbjct: 208 ELEQTGKLHAAL 219 >gi|271969844|ref|YP_003344040.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021] gi|270513019|gb|ACZ91297.1| hypothetical protein Sros_8655 [Streptosporangium roseum DSM 43021] Length = 205 Score = 72.6 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 39/178 (21%), Positives = 69/178 (38%), Gaps = 16/178 (8%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + VL + DL G V+ L+ VA + V DG + + G ++ Sbjct: 36 KPDTASVTVLAAARDLPSG-VLEAADLKAVALRPDTVPDGAVKPG------TAIAGRVLA 88 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 P+ +G+P+ +++ L + G A + ++ ++ P D VDV+ S Sbjct: 89 GPMRRGEPLTDARILGP---SLLAAHGPGTVATPVRVADPET-ARLLSPGDVVDVLAAPS 144 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 E V ++ V+ D G+ L T QA L +AQ+ LS Sbjct: 145 TWEGAAPARTVAEDVTVL-----TTPDGEADRGALLVLATTSDQAVELASAQAGGHLS 197 >gi|307324474|ref|ZP_07603682.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu 4113] gi|306890205|gb|EFN21183.1| Flp pilus assembly protein CpaB [Streptomyces violaceusniger Tu 4113] Length = 234 Score = 72.6 bits (177), Expect = 5e-11, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 91/249 (36%), Gaps = 29/249 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S + A+ A A L + V+++ K + D+ + Sbjct: 6 RRGVILLLLSVLCAVGA--FAGVLSVVNDVESKVGPETTAYKLTS------DVKPYKALD 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 E V+ P+ V + D + EL G + + KG ++ + + +R Sbjct: 58 AGEFEKVSMPKRYVPSTAVTD------LAELRGKIAVTQLAKGSLLQRDMIANRPA---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVI--- 177 L G++ + I ++ V G I P V++ S KP ++++ V+ Sbjct: 108 --LKPGQQEIAIMIDAATGVAGKITPGAEVNIYATFEGSTQGEKPVSKLIVAGAEVLDLG 165 Query: 178 ---AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSED 233 A++ N D R+ T L A+ + A+S A + L L + D Sbjct: 166 RITALEPNQDDKRRINEAVPITFALDTKNAQRVAYAESFASHVRLALVAPGGGTSIGPGD 225 Query: 234 SDVWDVQEE 242 ++ Sbjct: 226 RTYTLDGDK 234 >gi|89892806|ref|YP_516293.1| hypothetical protein DSY0060 [Desulfitobacterium hafniense Y51] gi|89332254|dbj|BAE81849.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 274 Score = 72.2 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 43/223 (19%), Positives = 86/223 (38%), Gaps = 26/223 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV ++ ++ V+P ++ ++ ++ ++ G +T + ++ V Sbjct: 9 VVGVICILLSLLICFGVTPLFNKSV-------SQKTEIVRVVKEIKAGDEITKDTVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 + D I + + G + + GD I KL D + L L Sbjct: 62 VGGFGLPDNVIRQS------ETVIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGT 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I ++ + G ++ D V V+ + + L + VI++ Sbjct: 116 KQAMSVTIKSFANGLSGKLQSGDIVSVIAADYKKQGTTVIPAELKYVEVISVTASSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D+ + ST TL ++P Q+K L +S KL L L Sbjct: 176 NTGEAKSEDDDRELPSTVTLLVSPEQSKVLAELESDGKLHLSL 218 >gi|218848027|ref|YP_002454867.1| hypothetical secreted protein [Bacillus cereus G9842] gi|218546158|gb|ACK98551.1| hypothetical secreted protein [Bacillus cereus G9842] Length = 303 Score = 72.2 bits (176), Expect = 6e-11, Method: Composition-based stats. Identities = 36/177 (20%), Positives = 68/177 (38%), Gaps = 16/177 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +++ FP + + DG I + KL Sbjct: 51 ITADMIAEKEFPVSGIPPKTALKKEEVLGKWTKDG----YGIAANSYMNSTKLAKEEELT 106 Query: 121 LSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N+ Sbjct: 107 DAGVISLKEGEHAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163 >gi|229816461|ref|ZP_04446762.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM 13280] gi|229808003|gb|EEP43804.1| hypothetical protein COLINT_03515 [Collinsella intestinalis DSM 13280] Length = 226 Score = 72.2 bits (176), Expect = 7e-11, Method: Composition-based stats. Identities = 38/222 (17%), Positives = 85/222 (38%), Gaps = 22/222 (9%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK----FINVLISKGDLAVG 58 + R + + +S V L A ++A V+ H + E+ + V ++ ++ G Sbjct: 1 MKRTVRLGLSAVMGLSAALLAWSAVAGAHAEAEQASRRALERYGGDVTRVCVALREIEPG 60 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 ++ ++ V + + + + +M + G++ I P+ + Sbjct: 61 DEISEGNVKVVEWVSSLMPEDALT------SMGDASGLVATARIPAHTPLAKAHFLRDER 114 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIA 178 +P+G A ++ AVGG + D VDV + + + L+ V+ Sbjct: 115 V---VQVPRGTVAISVASDAEHAVGGSLARGDEVDVYVADASVADR------LTRAEVLD 165 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D + S TL + + ++AA + +++LVL Sbjct: 166 TSVLADGGGDL---SWVTLAVDASAVRDVLAATTRGEVTLVL 204 >gi|269957599|ref|YP_003327388.1| SAF domain-containing protein [Xylanimonas cellulosilytica DSM 15894] gi|269306280|gb|ACZ31830.1| SAF domain protein [Xylanimonas cellulosilytica DSM 15894] Length = 227 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 73/209 (34%), Gaps = 23/209 (11%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ T +V+ P +V++ L G+ + L V+ P DG Sbjct: 31 LLVALCCGIAASSTVQVLRPAPPPMRSVVVPTHRLEPGVELRAGDLTVVSVPAALAPDGA 90 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + D + G + V + G P+ + G +++L P G + + ++ Sbjct: 91 LTDTA------DAVGRVPAVALEAGLPLSASLVAG---GEVAALAPTGTVVVPVRLDDAT 141 Query: 141 AVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLV--------G 192 A +++ D VD+V SL P + + V+ Sbjct: 142 AA--LLRAGDRVDLVSTASLD---PEAAYLARRVLVLTPGSRAAEGGGASGLLGGAVSDA 196 Query: 193 STATL-ELTPMQAKALVAAQSVAKLSLVL 220 TL ++P +A L AA ++ VL Sbjct: 197 PVVTLVAVSPAEAPGLSAASGAGTVAAVL 225 >gi|317123663|ref|YP_004097775.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043] gi|315587751|gb|ADU47048.1| Flp pilus assembly protein CpaB [Intrasporangium calvum DSM 43043] Length = 267 Score = 71.8 bits (175), Expect = 8e-11, Method: Composition-based stats. Identities = 38/238 (15%), Positives = 87/238 (36%), Gaps = 32/238 (13%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTP----NILEWVAFPEENVFDGFIDDVH 85 ++V+ + + V +++ + G + ++ G +DD++ Sbjct: 24 NYVRGADARAIADQQPAKVYLAEKLIPAGTTLKDAQRTELIVETRVATVARPQGALDDIN 83 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 N+ +L I G+ + + R G + +P G A ++++S + +G Sbjct: 84 PENSA-----LLALSDIQPGEFVMASRFGTRPVGEKAIEVPAGMLAMSVELSDPARIGKF 138 Query: 146 IKPNDHVDVVMVRS---LSERKPT----------VTVVLSNIRVIAIDHN-IDSDERVLV 191 + P + + + E T TV+L ++VIA+ + + ++ Sbjct: 139 VTPGSDIAIFATHGMKLIGEDDATKAFNELNLKGTTVLLDKVQVIAMGDTPLAAPKKAEA 198 Query: 192 GST--------ATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQE 241 G T+ +TP Q+ L + L LR +D+ + +D D+ Sbjct: 199 GKADEQTPSFLVTVAVTPEQSLRLAHGINEYTLYAGLRG-SDVKIPADGHTDDSDIFS 255 >gi|228989141|ref|ZP_04149159.1| Hypothetical secreted protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770568|gb|EEM19115.1| Hypothetical secreted protein [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 303 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 20/179 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 +T +++ FP + +++ G + I + KL Sbjct: 51 ITADMIAEKEFPVSGIPP------KTALKKEDVLGKWTKDGYGIAANSYMNSTKLAKEEE 104 Query: 119 GGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N+ Sbjct: 105 LTDAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163 >gi|160941850|ref|ZP_02089177.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC BAA-613] gi|158435347|gb|EDP13114.1| hypothetical protein CLOBOL_06746 [Clostridium bolteae ATCC BAA-613] Length = 278 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 85/222 (38%), Gaps = 25/222 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V G+ +V + L +P Q ++ +++ + + G +T + ++ V Sbjct: 9 VLGILCIVLSLAICFLATPLFNQAI-------SEKTDIVRVQKAIKAGDEITKDKVQMVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV--DRGNGGLSSLLPKG 128 N+ + + D + + G +L GD + K+ G L Sbjct: 62 VGGYNLPENVMKD------LGSVVGAYATADLLPGDYVLYSKISVQPPGADTYLYQLDGT 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNI---- 183 K+A ++ + ++ V G ++ D V ++ + + L ++VIA+ + Sbjct: 116 KQAISVTVKSFAAGVSGKLRSGDIVSILAPDYRKMGETVIPQELQYVQVIAVTASTGVDA 175 Query: 184 -----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 D ++ + +T TL TP+Q K L ++ L L Sbjct: 176 NTAGGDKEKEKSLPATLTLLATPIQCKVLAELETEGNLHAAL 217 >gi|209546007|ref|YP_002277897.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209538864|gb|ACI58797.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 312 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 14/155 (9%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 V PE G + + P A L I G + + D G L+++ Sbjct: 58 PVMLPESF---GALAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDNDGGRLTTM 114 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 + GKRA T+ ++ +SAVG ++P +VD++ Sbjct: 115 IAPGKRALTLPVNAASAVGHFVEPGSYVDILGTVD 149 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%) Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVA 214 S + L N++V+A+ ++ V ++ T+E+TP +A+ L+ A QS Sbjct: 228 SRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFAMGQSNG 287 Query: 215 KLSLVLRSIADLNPSS 230 L+LVLR+ AD Sbjct: 288 SLNLVLRNPADNTVEE 303 >gi|156975625|ref|YP_001446532.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116] gi|156527219|gb|ABU72305.1| hypothetical protein VIBHAR_03358 [Vibrio harveyi ATCC BAA-1116] Length = 204 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 78/197 (39%), Gaps = 24/197 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVIT------ENPAKFINVLISKGDLAVGMVVT 62 +V + + LV GI ++ H Q ++ E A ++ V +K +L G + Sbjct: 1 MVFALLALLVGGIGIYSHMTAHPQQQNPTVSQSSNSDEPQAHYVQVWRAKSNLERGTPIE 60 Query: 63 PNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-KLVDRGNGG 120 + ++ + +G D+ + L I G + E ++ + Sbjct: 61 IDDVQKEQMLLNIALEEGINSDIKLDFSPSTLLSK----NIEAGKIVFSEYQVKENDPRY 116 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER------------KPTVT 168 + L+ +GK ++ +S + V G I+P +VDV+ V S E Sbjct: 117 IDLLITEGKEPYSLLVSTRNLVKGYIRPGTNVDVLSVGSPKENLADEDTDAIDFSGVNAQ 176 Query: 169 VVLSNIRVIAIDHNIDS 185 ++L N++V+++ + + Sbjct: 177 LILRNVKVLSVGNTKEP 193 >gi|228949326|ref|ZP_04111589.1| Hypothetical secreted protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810309|gb|EEM56667.1| Hypothetical secreted protein [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 303 Score = 71.5 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 35/179 (19%), Positives = 70/179 (39%), Gaps = 20/179 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M L I + A+VAG+ + TE+ K + V+++K D+A Sbjct: 1 MNLASKKVIAGTAAIAVVAGVWGYSYMQ----------TESKIKPVKVVVTKQDIAPHTK 50 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGN 118 +T +++ FP + +++ G + I + KL Sbjct: 51 ITADMIAEKEFPVSGIPP------KTALKKEDVLGKWTKDGYGIAANSYMNSTKLAKEEE 104 Query: 119 GGLSSLL--PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIR 175 + ++ +G+ A T+ + I ++ G I PN +VD+ + +L K V + N+ Sbjct: 105 LTDAGVISLKEGEYAFTLPVDIETSNGNAIVPNTYVDLYLAANLDAEKLGQAVGIQNLE 163 >gi|282865299|ref|ZP_06274351.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE] gi|282559772|gb|EFB65322.1| Flp pilus assembly protein CpaB [Streptomyces sp. ACTE] Length = 237 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 39/252 (15%), Positives = 88/252 (34%), Gaps = 30/252 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ +++S + A A + ++S + + + K D+A + Sbjct: 6 RRGVILLLLSVLCAFGAFAGVLSVISDVNAKVGPEVAAYQVKT--------DVAPYTTLE 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P E V P+ + + D+ ++G + + G ++ + LV R Sbjct: 58 PGQFEKVTMPKRWLSRNAVTDLAV------INGKIAVTRLHAGSLLQDDMLVKRP----- 106 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180 + G++ + I ++ V G I+P + V++ K T V++ N +VI + Sbjct: 107 -RVENGEQEIAIMIDAATGVAGKIRPGNLVNIFATFAGENEGEKATSRVIVPNAKVIDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232 + T L A+ + A+S A+ + L L Sbjct: 166 ELTALEPKKDQRGSGLTEAVPITFALNTTDAQRVAYAESFAEHVRLALLPENSPTTLRPG 225 Query: 233 DSDVWDVQEEGK 244 + +++ K Sbjct: 226 EGSYSLDEDKNK 237 >gi|294631139|ref|ZP_06709699.1| flp pilus assembly protein CpaB [Streptomyces sp. e14] gi|292834472|gb|EFF92821.1| flp pilus assembly protein CpaB [Streptomyces sp. e14] Length = 235 Score = 71.1 bits (173), Expect = 1e-10, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 78/201 (38%), Gaps = 22/201 (10%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K D+ ++ + E + P+ + + D+ + + G + + +G ++ + Sbjct: 47 KTDVKPYTTLSADQFEKIKMPKRWLSPNAVTDLSR------IRGKIAVTTLRQGSLLQSD 100 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169 +VD+ L G++ + I ++ V G I P V+V + Sbjct: 101 MIVDQPA------LRPGQQEVAIMIDAATGVAGKITPGSSVNVYATFAGQRQGDPAQSKI 154 Query: 170 VLSNIRVI------AIDHNID-SDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221 +++ +V+ A+D N D ++ T L+ + A+ + A+S A ++ L L Sbjct: 155 IVTGAKVLDVGRITALDPNSDNRSQQPSEVVPITFALSALDAQRITYAESFAQRVRLALV 214 Query: 222 SIADLNPSSSEDSDVWDVQEE 242 + + D +++ Sbjct: 215 APGGDAGVPAGDRTYELAKDK 235 >gi|86360427|ref|YP_472315.1| hypothetical protein RHE_PE00151 [Rhizobium etli CFN 42] gi|86284529|gb|ABC93588.1| hypothetical conserved protein [Rhizobium etli CFN 42] Length = 309 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 55/154 (35%), Gaps = 8/154 (5%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ + V G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFWTESVKNEQVAYAFMRLQPDKKV-------TRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 V PE + + L I G + + D G L++++ Sbjct: 58 PVMLPESFGPLAKLAVPAASAYQEWLKDRTAAADIPAGSVLLFQYFDDTDGGRLTTMIAP 117 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 GKRA T+ ++ + AVG ++P +VD++ Sbjct: 118 GKRALTLPVNAAEAVGHFVEPGSYVDILGTVDEP 151 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%) Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVA 214 S + L N++V+A+ + V ++ T+E+TP +A+ L+ A Q+ Sbjct: 225 SRTRVVTRTFLQNVKVLAVGAATTPEGAVTKANSSYNHVTVEVTPSEAEMLIFAMGQANG 284 Query: 215 KLSLVLRSIADLNPSS 230 L+LVLR+ D + Sbjct: 285 SLNLVLRNPTDNSVED 300 >gi|54309659|ref|YP_130679.1| hypothetical protein PBPRA2495 [Photobacterium profundum SS9] gi|46914097|emb|CAG20877.1| Hypothetical protein PBPRA2495 [Photobacterium profundum SS9] Length = 284 Score = 71.1 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 50/244 (20%), Positives = 87/244 (35%), Gaps = 35/244 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I V + G +A L+S + V E K+I V + LA G Sbjct: 1 MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASPPVTEEKEIKYITVWRATSALARGQT 59 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 ++P+ L EE I+ N L+ + + +G + E G G Sbjct: 60 LSPSSLTREQLTEEAALSLGINSDVTLNFEPT---TLMNMDVKQGALVFPELQTSPGQAG 116 Query: 121 LSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN------ 173 +L+ +G + I+ + + I+P D++D++ V S T L N Sbjct: 117 YLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVRA 176 Query: 174 ------IRVIAIDHN----IDSDERVLVG--------------STATLELTPMQAKALVA 209 IRV+++ + +D+R + ST +E+ P L Sbjct: 177 SLLMRRIRVMSVGQSNTLAEKADQRATITSTIRPKVNISNENESTVVIEVNPDDLAKLSL 236 Query: 210 AQSV 213 AQ Sbjct: 237 AQRT 240 >gi|303241416|ref|ZP_07327919.1| SAF domain protein [Acetivibrio cellulolyticus CD2] gi|302591025|gb|EFL60770.1| SAF domain protein [Acetivibrio cellulolyticus CD2] Length = 255 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 48/235 (20%), Positives = 88/235 (37%), Gaps = 28/235 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL + G+ +V + +++P + TE ++ D+ G V Sbjct: 1 MKLNFIKSRTAIGLICIVLSLFICFILTPMFNSGLKAQTE-------IIRISSDMKKGEV 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + N LE V N+ I +++ G V ++KGD I K+ D+ Sbjct: 54 IAGNKLEVVKVGAYNLPQNIIKR------KEDVVGKYVNCDLMKGDYILSSKVTDKPLLE 107 Query: 121 LSSL--LPKGKRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 L L K A ++ I ++ + G ++ D V ++ + T+ L ++V+ Sbjct: 108 FEYLNDLDGTKVAMSITIKSFAAGLSGKLESGDIVTLISSNYDNMGSATIPSELKYVKVL 167 Query: 178 A------ID-HNID-----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 A +D D+ + ST TL + QAK L + + L Sbjct: 168 AATTESGMDKQQAQAEIKKEDKETELPSTLTLIVNTEQAKVLADLEQKGNIHATL 222 >gi|284033647|ref|YP_003383578.1| SAF domain-containing protein [Kribbella flavida DSM 17836] gi|283812940|gb|ADB34779.1| SAF domain protein [Kribbella flavida DSM 17836] Length = 203 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 69/184 (37%), Gaps = 20/184 (10%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 ++ PA VL + DL G+ + + P V G + +L Sbjct: 35 AVSPPPAASTPVLAAARDLPGGLTPAAGDIRTLRLPTSTVPAGVL------PPGTDLSHR 88 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 ++ + G+P+ + + + +P G A + + + + +++P D +D+ Sbjct: 89 VLATAVRSGEPLTDARFLTP------TAVPPGLLAYPLRLDDAD-IAALLRPGDRIDLYA 141 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + ++ T + + ++A+ G+ L +P A L A + +L Sbjct: 142 ASATADASATR--LAEAVPILAL-----PAPTRSTGALVVLAASPGTAARLAQASANTRL 194 Query: 217 SLVL 220 ++ L Sbjct: 195 TVAL 198 >gi|89100212|ref|ZP_01173079.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911] gi|89085062|gb|EAR64196.1| hypothetical protein B14911_20170 [Bacillus sp. NRRL B-14911] Length = 274 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 67/178 (37%), Gaps = 20/178 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ I+VS + A AG +Q + V ++ D+ ++ Sbjct: 5 KRRAIIFILVSVLLAAAAGFFV--------LQKVSALNSELGGMTEVYVAASDIPSRTLI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 ++ V P V + + +V ++L ++ VP+ D I + + Sbjct: 57 EREQVKTVEIPNRYVNNSHVTNV------EDLINKVLVVPVAAEDVITKTMIKP-----V 105 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 S++ + R + S ++ D VD+++ ++ KP + ++ V A+ Sbjct: 106 SNVRDENNRLVMIPQSDKVNFDQQLEALDRVDIIVSHKFND-KPVTETFMKDVPVAAV 162 >gi|325288260|ref|YP_004264441.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM 8271] gi|324963661|gb|ADY54440.1| Flp pilus assembly protein CpaB [Syntrophobotulus glycolicus DSM 8271] Length = 274 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 41/223 (18%), Positives = 84/223 (37%), Gaps = 26/223 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 V GV ++ ++ V+P ++ ++ ++ ++ G +T + ++ V Sbjct: 9 VVGVICILLSLLICFGVTPLFNKSV-------SQKTEIVRVVKEIKAGDEITKDTVQTVE 61 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 + D I + G + + GD I KL D + L L Sbjct: 62 VGGFGLPDNVIRQSEM------VIGKYAKSDLSIGDYILNTKLSDTPAAENAYLYNLDGT 115 Query: 129 KRAATMDISI-SSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-------- 179 K+A ++ I ++ + G ++ D V V+ + + L + VI++ Sbjct: 116 KQAMSVTIKSFANGLSGKLQSGDIVSVIAADHKKQGSTVIPAELKYVEVISVTASSGYDA 175 Query: 180 --DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + ST TL ++P Q+K L ++ KL L L Sbjct: 176 NTGEAKSEKDERELPSTVTLLVSPEQSKVLAELEADGKLHLAL 218 >gi|318057607|ref|ZP_07976330.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actG] gi|318080518|ref|ZP_07987850.1| Flp pilus assembly protein CpaB [Streptomyces sp. SA3_actF] Length = 225 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 43/244 (17%), Positives = 93/244 (38%), Gaps = 30/244 (12%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +V+S V AL+A + + +V + + + T K D+A + + E Sbjct: 1 MVLSAVCALIALVGVLGVVRNVNSKVGDEKTAYRLKD--------DIAPYKSLDASQFEK 52 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V+ PE + D + + L G + + KG ++ + +V+R L G Sbjct: 53 VSVPERWLPDTAVT------QLGALRGKIAVTTLHKGSLLQDDMIVNRPA------LRAG 100 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNI--- 183 ++ + I ++ V G I P V++ +K +++ +V+ + Sbjct: 101 EQEIAIMIDAATGVAGKITPGSSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFD 160 Query: 184 ----DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWD 238 D+ R T L A+ + A+S A + L L + P+++ + Sbjct: 161 QNNDDNRNRSTEAVPITFGLGTTDAQRVAYAESFATHVRLALVGAGEQPPAAAGPDRTYT 220 Query: 239 VQEE 242 + ++ Sbjct: 221 LDKD 224 >gi|295836768|ref|ZP_06823701.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74] gi|295826199|gb|EFG64734.1| flp pilus assembly protein CpaB [Streptomyces sp. SPB74] Length = 225 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 77/201 (38%), Gaps = 22/201 (10%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K D+A + + E V+ P+ + D + + + L G + + +G ++ + Sbjct: 36 KNDIAPYKSIDASQFEKVSVPKRWLPDTAVTE------LGALRGKIAVTTLHRGSLLQDD 89 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTV 169 +V+R L G++ + I ++ V G I P V++ +K + Sbjct: 90 MIVNRPA------LRAGEQEIAIMIDAATGVAGKITPGSSVNIYATFKAQNEGQKDESRL 143 Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTP-------MQAKALVAAQSVAK-LSLVLR 221 ++ +V+ + D+ T E P A+ + A+S A + L L Sbjct: 144 IVERAQVLDVGKLTPFDQNNDDNRNRTTEAVPITFGLGTGDAQRVAYAESFATHVRLALV 203 Query: 222 SIADLNPSSSEDSDVWDVQEE 242 + P+++ + + ++ Sbjct: 204 GAGEQPPAAAGPDRTYTLDKD 224 >gi|29829798|ref|NP_824432.1| hypothetical protein SAV_3256 [Streptomyces avermitilis MA-4680] gi|29606907|dbj|BAC70967.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 209 Score = 70.7 bits (172), Expect = 2e-10, Method: Composition-based stats. Identities = 42/209 (20%), Positives = 80/209 (38%), Gaps = 28/209 (13%) Query: 50 ISK----GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++ D+A ++ + E V+ P + + D+ Q + G + + KG Sbjct: 13 VAAYRLRNDIAPYKELSADQFEKVSMPRRWLSKTAVTDLAQ------IRGKIAVTQLEKG 66 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSER 163 ++ + +VDR L G++ + I S+ V G I P V++ + Sbjct: 67 SLLQTDMIVDRPA------LAAGQQEIAIMIDASTGVAGKINPGSRVNIYATFKAPSDKG 120 Query: 164 KPTVTVVLSNIRVI------AIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVA 214 K V++ N RV+ A+D SD+R S T L A+ + A+S A Sbjct: 121 KDQSKVIVENARVLDVGKLTALDPGQSSDQRRRTASEAVPITFALDTADAQRVAYAESFA 180 Query: 215 K-LSLVLRSIADLNPSSSEDSDVWDVQEE 242 + + L L + D +++ Sbjct: 181 EHVRLALVAGGSGTTVPPGDRSYTLDEDK 209 >gi|299889217|dbj|BAJ10317.1| hypothetical protein [Streptomyces lavendulae subsp. lavendulae] Length = 233 Score = 70.3 bits (171), Expect = 2e-10, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 81/204 (39%), Gaps = 24/204 (11%) Query: 49 LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +++ KGD+A ++ E V P+ + D + D + L G + + KG Sbjct: 41 VVAYRVKGDIAPYSALSAGQFEEVKVPKRWLSDTAVSD------LGSLQGKIALTTLKKG 94 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 ++ + VD+ L G++ + I ++ V G I V+++ ++ Sbjct: 95 SLLQSDMFVDKPQ------LQPGEQEIAIMIDAATGVAGKITSGAKVNIIATFKGAKETD 148 Query: 166 TVT--VVLSNIRVIAIDHNI----DSDER-VLVGSTATLELTPMQAKALVAAQSVAK-LS 217 ++++N RV+ + D D++ T L + + A+S A+ + Sbjct: 149 PSRSVIIVANARVLGVGKLTALDKDGDKKGPAEAVPITFALNTKDTQRVAYAESFAEHVR 208 Query: 218 LVLRSIA-DLNPSSSEDSDVWDVQ 240 L L + D PS ++ + D Sbjct: 209 LALVAPGTDSAPSPTDRTYTLDGD 232 >gi|331694666|ref|YP_004330905.1| SAF domain-containing protein [Pseudonocardia dioxanivorans CB1190] gi|326949355|gb|AEA23052.1| SAF domain protein [Pseudonocardia dioxanivorans CB1190] Length = 224 Score = 70.3 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 81/206 (39%), Gaps = 14/206 (6%) Query: 20 GIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 ++A R+++ V T V+ PA + V+++ DL G + + ++P+ V Sbjct: 27 AVLARRVIAGALVVTAVVLALRPAADPGVPVVVAVHDLPAGTTLAAADVAVRSWPQGLVP 86 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 G A ++ G ++ P G+P+ +LV +++ A ++ + Sbjct: 87 GGV------AAAPSDVTGRVLAGPARAGEPLTDLRLVGPALAVVATGRAD---AVSVPVR 137 Query: 138 -ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196 V G++ P VDVV + ++ + + V+ G Sbjct: 138 LADPGVAGLLTPGSLVDVVTPGATADEAVVLASAAAVTAVLPA--ENGPVAGAAKGRLVL 195 Query: 197 LELTPMQAKALVAAQSVAKLSLVLRS 222 + L P QA L AA ++++ LR Sbjct: 196 VALPPAQATRLAAASLTQQVAITLRP 221 >gi|21223378|ref|NP_629157.1| hypothetical protein SCO5005 [Streptomyces coelicolor A3(2)] gi|8218167|emb|CAB92598.1| hypothetical proten SCK15.07 [Streptomyces coelicolor A3(2)] Length = 203 Score = 69.9 bits (170), Expect = 3e-10, Method: Composition-based stats. Identities = 31/183 (16%), Positives = 65/183 (35%), Gaps = 22/183 (12%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K D+ + E V PE + + + D+ + + G + + G ++ + Sbjct: 15 KSDIEPYTELGATQFEKVEMPERWLSENAVTDLSR------VRGKIAVTTLKAGSLLQTD 68 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169 +VD L G++ + I ++ V G I P V+V + Sbjct: 69 MIVDTPA------LRPGQQEVAIMIDAATGVAGKITPGSTVNVYATFEGPREGDPDQSKI 122 Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVLR 221 +++ +VI + D T L+ + A+ + A+S A ++ L L Sbjct: 123 IVTGAKVIDVGELTSLEPDEDSRDREPTDAVPITFALSTIDAQRITYAESFARRVRLALV 182 Query: 222 SIA 224 + Sbjct: 183 APG 185 >gi|116255772|ref|YP_771605.1| hypothetical protein pRL110571 [Rhizobium leguminosarum bv. viciae 3841] gi|115260420|emb|CAK03524.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae 3841] Length = 312 Score = 69.9 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQTAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 V PE G + + P A L I G + + D G L+++ Sbjct: 58 PVMLPESF---GALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTM 114 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + GKRA T+ ++ ++AVG ++P +VD++ Sbjct: 115 IAPGKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 77/222 (34%), Gaps = 48/222 (21%) Query: 51 SKGDLAVGMVVTPNIL----------------EWVAFPEENVFDGFIDDVHQPNAMQELD 94 + D+ G V+ + P + +P + ++ Sbjct: 88 AASDIPAGSVLLFQYFDDTDGGRLTTMIAPGKRALTLPVNAA--AAVGHFVEPGSYVDIL 145 Query: 95 GVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA----TMDISISSAVGGMIK--- 147 G V P+ +P+ G G + +P A T S V M+K Sbjct: 146 GT-VDEPV---EPVAPAAATQPGAPGQAPAVPGQPPAVAGQPTAPAQPQSPVEQMLKNYL 201 Query: 148 ---PN-DHVDVVMVRSLSER---------KPTVTVVLSNIRVIAIDHNIDSDERVLVGST 194 P D DV R ++ + L N++V+A+ ++ V ++ Sbjct: 202 TQYPGADENDVNAYRKQAQDYKLGISSRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANS 261 Query: 195 ----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADLNPSS 230 T+E+TP +A+ L+ A QS L+LVLR+ AD Sbjct: 262 TYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADNTVED 303 >gi|260775654|ref|ZP_05884550.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] gi|260608070|gb|EEX34239.1| flp pilus assembly protein RcpC/CpaB [Vibrio coralliilyticus ATCC BAA-450] Length = 263 Score = 69.9 bits (170), Expect = 4e-10, Method: Composition-based stats. Identities = 44/233 (18%), Positives = 94/233 (40%), Gaps = 26/233 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK ++ + + G+ A+ +SP EV+ P +++ + K Sbjct: 1 MKNKVIISLASFSILVGAYGLSAV--LSPKPTDATEVV---PTRYVKLWELKEPAKAKQE 55 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T L E + G++DDV ++ + G+L R + +G + + + + Sbjct: 56 LTREQLSVRRMKENEANELGYVDDV----SLSIVPGMLFRSNMAEGTLVTADDFIRPDDA 111 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP------------- 165 + +L +GK + + + VG I+ D +D++ L+ Sbjct: 112 DYVDFILAEGKMPYRLTVVTENIVGTAIESGDLIDILAFTGLNGEDAYQEVALASKPVKG 171 Query: 166 --TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 +VT + + I+V+ ++ + D+ +T LE+ QA L A+ +A L Sbjct: 172 AISVTPIFAAIKVLRVETEVKKDDTQPQATTFILEMDRKQAVTLTLAKRIATL 224 >gi|303233382|ref|ZP_07320051.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4] gi|302480511|gb|EFL43602.1| Flp pilus assembly protein CpaB [Atopobium vaginae PB189-T1-4] Length = 335 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 78/216 (36%), Gaps = 18/216 (8%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + E++ + + +++S L VG V+ P+ + + Sbjct: 30 ADAQKMREDLQARYGGETVELVVSTKALRVGDVIEPSDVVKRDWVSMLAPADAYTR---- 85 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIK 147 M+++ G V+VP+ + PI +P+G A ++ ++ +G I Sbjct: 86 --MEDVVGKTVKVPLSENAPITQTTFAAMDEQ---YSIPEGYVALSIPLTEKLGLGQHIA 140 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 P+ V + + ++ S++RV+ + D + + + P + Sbjct: 141 PHTAV-----VAYEATQKASDLITSDMRVLYVQ---DEARGQFSSPSCVVAVKPQDVGRI 192 Query: 208 VAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEG 243 + AQ+ L V D +++ S+ +E Sbjct: 193 LTAQAKNSLKFV-VPAQDTTSDNADASNAATGTQEN 227 >gi|294814743|ref|ZP_06773386.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] gi|326443124|ref|ZP_08217858.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] gi|294327342|gb|EFG08985.1| Flp pilus assembly protein CpaB [Streptomyces clavuligerus ATCC 27064] Length = 237 Score = 69.5 bits (169), Expect = 4e-10, Method: Composition-based stats. Identities = 43/252 (17%), Positives = 90/252 (35%), Gaps = 30/252 (11%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ ++VS + AL A + +++ + + T D+A + Sbjct: 6 RRGVILLIVSVLCALGAFAGVISVINDVNSKVGPEATA--------YRLASDVAPYTALR 57 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 P E VA P + + D + + G + + KG ++ + +V R Sbjct: 58 PGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDDMIVKRPE---- 107 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTVVLSNIRVIAID 180 L G++ + I ++ V G I P D V++ ++++N +VI + Sbjct: 108 --LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRIIVTNAKVIDVG 165 Query: 181 HNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSE 232 D R+ T L A+ + A+S A+ + L L + + Sbjct: 166 RLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALLAKGSPSTLRPG 225 Query: 233 DSDVWDVQEEGK 244 DS ++ + Sbjct: 226 DSTYTLDEDRSR 237 >gi|320161465|ref|YP_004174689.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] gi|319995318|dbj|BAJ64089.1| hypothetical protein ANT_20630 [Anaerolinea thermophila UNI-1] Length = 376 Score = 69.5 bits (169), Expect = 5e-10, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 66/141 (46%), Gaps = 11/141 (7%) Query: 23 AMRLVSPHHVQTEEVITENPA----KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 +R +P+ + T T P + +++IS ++ G+ + + +P++++ + Sbjct: 29 VVRFFAPNQLPTAPGETSAPPTPVEEMTSIVISVQPISRGLEFNETNVTTIPYPKKDLVE 88 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDI 136 G +QE+ G + I PI + LVD N + +P G+ A T+ + Sbjct: 89 GAF-----ITDIQEVLGKRAKFDIEARTPITMTMLVDPTTKNSPAAFQIPPGQVAITIPV 143 Query: 137 SISSAVGGMIKPNDHVDVVMV 157 S S+V ++P DHV+V++ Sbjct: 144 SKLSSVAYGLEPGDHVNVIVS 164 Score = 39.1 bits (90), Expect = 0.58, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 182 NIDSDERVLVGSTATLELTPMQAKA---LVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 T TL +TP A L+ A +L+LV+RS D ++E + Sbjct: 276 QAQQPAEAPKPDTVTLIVTPQDAVTLNYLMLA--GGRLNLVMRSAGDSQRIATEPVTLQF 333 Query: 239 V--QEEGKEIQIIKAGVIVNKD 258 + Q + G+ D Sbjct: 334 ILDQYNIPNPAKLPYGLEPRLD 355 >gi|154499687|ref|ZP_02037725.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC 29799] gi|150271285|gb|EDM98542.1| hypothetical protein BACCAP_03344 [Bacteroides capillosus ATCC 29799] Length = 296 Score = 69.2 bits (168), Expect = 5e-10, Method: Composition-based stats. Identities = 45/251 (17%), Positives = 93/251 (37%), Gaps = 37/251 (14%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S V A V +A+ I ++ + G Sbjct: 7 MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKTEIVRITQPVLKGE 55 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + E V N+ +M +++G+ V + +GD I K+ Sbjct: 56 TITSDNAEVVEVGGYNLPSNVAH------SMDDVEGLYVTADLAEGDYILTSKVSTVPVS 109 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A ++ + +++S + ++P D + + +E P L ++V Sbjct: 110 SDVALNDIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLETAEEVPE----LRFVKV 165 Query: 177 IAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL--RSIA 224 +++ DE +T T+ +P QA+ + ++ + L R+ Sbjct: 166 LSVTDSDGINVDNTKETTEDEEPQQSATITVLASPEQARIITEMENDGVAHVALISRNND 225 Query: 225 DLNPSSSEDSD 235 L + D Sbjct: 226 QLAEELLAEQD 236 >gi|257790639|ref|YP_003181245.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] gi|257474536|gb|ACV54856.1| Flp pilus assembly protein CpaB [Eggerthella lenta DSM 2243] Length = 432 Score = 69.2 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 38/183 (20%), Positives = 71/183 (38%), Gaps = 7/183 (3%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 ++ +I +N A +NV+++ D+A G +T LE A P+ V Sbjct: 236 FSGMRVAESSAIIAKNEANSVNVVVTNRDVAAGETITEADLETQAVPKAYCPTDAATKVS 295 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGM 145 L I ++S + G A + + S ++ + Sbjct: 296 DVAGHTSLTTQTAGTSISL-----SSLQASSSPAHITSAIEDGHVAIALSLDSSKSLSPL 350 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205 ++ D V+V+ V S + V +N+++IA+D + S TL++T QA Sbjct: 351 LRVGDRVNVMAVVS-DGATSSAETVCANVKIIALDSALSGSPDAG-YSLVTLDVTEDQAA 408 Query: 206 ALV 208 A+V Sbjct: 409 AIV 411 >gi|241667103|ref|YP_002985187.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240862560|gb|ACS60225.1| Flp pilus assembly protein CpaB [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 318 Score = 69.2 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 35/157 (22%), Positives = 64/157 (40%), Gaps = 14/157 (8%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++ + + L+ G++ TE V E A L + G +TP++L Sbjct: 5 LIAAVIVGLITGVLLYFW-------TESVKNEQVAYAFMRLQPDRKVTRGQAITPDMLAE 57 Query: 69 -VAFPEENVFDGFIDDVHQPNAMQE---LDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 V PE G + + P A L I G + + D G L+++ Sbjct: 58 PVMLPESF---GALAKLAVPAASAYQEWLKDRTAASDIPAGSVLLFQYFDDTDGGRLTTM 114 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 + GKRA T+ ++ ++AVG ++P +VD++ Sbjct: 115 IAPGKRALTLPVNAAAAVGHFVEPGSYVDILGTVDEP 151 Score = 65.3 bits (158), Expect = 9e-09, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 62/172 (36%), Gaps = 18/172 (10%) Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV---RVPILKGDPIRLEKLVDRGNGG 120 +IL V P E V P L G + P G P + Sbjct: 143 DILGTVDEPVEPVAPAAATQPGAPGQPAALPGQPAVPGQAPPAAGQPQAPAQPQSPVEQM 202 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L + L + + + V K + S + L N++V+A+ Sbjct: 203 LKNYLTQ------YPGADENDVNAYRKQAQD---YKLGISSRTRVVTRTFLQNVKVLAVG 253 Query: 181 HNIDSDERVLVGST----ATLELTPMQAKALVAA--QSVAKLSLVLRSIADL 226 ++ V ++ T+E+TP +A+ L+ A QS L+LVLR+ AD Sbjct: 254 AATTAEGAVTKANSTYNNVTVEVTPSEAEMLIFAMGQSNGSLNLVLRNPADN 305 >gi|323495636|ref|ZP_08100707.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] gi|323319271|gb|EGA72211.1| Flp pilus assembly protein CpaB [Vibrio sinaloensis DSM 21326] Length = 268 Score = 68.8 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 27/276 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++GI V A+V G+ + + V PAK I+V D+ V Sbjct: 1 MRTKLILGIAV---VAIVFGLYGLAGNLTESKAPQLVEKNKPAKLISVWQLNSDVPSAEV 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 V PN L+ V EE + + + G + R + G + +V + Sbjct: 58 VRPNQLKIVKLSEE---QAAAIGISEDMLFEYPPGSIFRSDMKVGTTLFATDIVAPNSPE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------ERK 164 L L G + +S + VGG+I+ + +VDV+ + S R Sbjct: 115 YLDLTLSDGFVPYPLKVSPDAVVGGVIRASSYVDVLALTSPEHLVSVEVNSSDSVARGRA 174 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221 +++ VL ++V+ ++ + + + T LEL Q L A+ ++ L V + Sbjct: 175 VSISPVLMGVKVLRVEQTFEEGAQEAGVAPDTHLILELDRKQVSILSVAKQISSLE-VHK 233 Query: 222 SIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 S+ D +S +D DV K + +A + K Sbjct: 234 SVGDYA-ASELHADAGDVLPGFKSVIEYRAETVTIK 268 >gi|239943893|ref|ZP_04695830.1| hypothetical protein SrosN15_23041 [Streptomyces roseosporus NRRL 15998] Length = 235 Score = 68.8 bits (167), Expect = 7e-10, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ + V FA AG++++ V E + K ++A + Sbjct: 11 LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KTNVAPYTALNSGQ 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 E + P+ + + + D ++E++ + + +G ++ + +V + L Sbjct: 61 FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177 G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168 Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235 A+D + D R T L + + + A+S A+ + L L + D Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGIIRPGDRT 228 Query: 236 VWDVQEE 242 +++ Sbjct: 229 YTLDKDK 235 >gi|239990347|ref|ZP_04711011.1| hypothetical protein SrosN1_23773 [Streptomyces roseosporus NRRL 11379] Length = 235 Score = 68.8 bits (167), Expect = 8e-10, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ + V FA AG++++ V E + K ++A + Sbjct: 11 LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KTNVAPYTALNSGQ 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 E + P+ + + + D ++E++ + + +G ++ + +V + L Sbjct: 61 FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177 G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168 Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235 A+D + D R T L + + + A+S A+ + L L + D Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIRPGDRT 228 Query: 236 VWDVQEE 242 +++ Sbjct: 229 YTLDKDK 235 >gi|182436324|ref|YP_001824043.1| hypothetical protein SGR_2531 [Streptomyces griseus subsp. griseus NBRC 13350] gi|326776954|ref|ZP_08236219.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus XylebKG-1] gi|178464840|dbj|BAG19360.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657287|gb|EGE42133.1| Flp pilus assembly protein CpaB [Streptomyces cf. griseus XylebKG-1] Length = 235 Score = 68.4 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 41/247 (16%), Positives = 93/247 (37%), Gaps = 32/247 (12%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L+ + V FA AG++++ V E + K ++A + Sbjct: 11 LLLLSVLCAFAAFAGVLSVISDVNSKVGPEVTAYQL----------KSNVAPYTALNSGQ 60 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 E + P+ + + + D ++E++ + + +G ++ + +V + L Sbjct: 61 FEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSDMMVRKPE------L 108 Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTVVLSNIRVI------ 177 G++ + I S+ V G I P V++ + ++ V++SN +V+ Sbjct: 109 RAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKVIVSNAKVLDVGELT 168 Query: 178 AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSD 235 A+D + D R T L + + + A+S A+ + L L + D Sbjct: 169 ALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALVAPGSDGTIRPGDRT 228 Query: 236 VWDVQEE 242 +++ Sbjct: 229 YTLDKDK 235 >gi|319937910|ref|ZP_08012310.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1] gi|319806816|gb|EFW03455.1| hypothetical protein HMPREF9488_03146 [Coprobacillus sp. 29_1] Length = 223 Score = 68.4 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 75/178 (42%), Gaps = 17/178 (9%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 +VL+ + G +T ++L + ++ D ++ + E+ G + + Sbjct: 31 GNMTDVLVVNQTVRGGTQITESMLSVKKVDKSSLPDNYLKASLR----DEVVGKYFDLGL 86 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + + + G +SL+ G +M + + G++ DH+++V+ S Sbjct: 87 TSGGVLTKDNISVSGK---ASLIQSGYILYSMK-DLETYPNGLVT-GDHLNIVVASSSDG 141 Query: 163 RKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 K T+ N+ V ++ +E V+ G + +TP A+ + AQ+ +S+ L Sbjct: 142 NKYVKTI--ENVPV----ASVHMEENVITG--IEVYVTPEAAQLIAFAQANGDVSVGL 191 >gi|302558701|ref|ZP_07311043.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000] gi|302476319|gb|EFL39412.1| flp pilus assembly protein CpaB [Streptomyces griseoflavus Tu4000] Length = 235 Score = 68.4 bits (166), Expect = 9e-10, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 73/208 (35%), Gaps = 23/208 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + K D+A ++ E + PE + + D+ + + Sbjct: 33 VESKVGPEVTAYRLKTDVAPYTPLSTGQFEKIKMPERWLSKNAVTDLAG------IRDKI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + +G ++ + +VDR L G++ + I ++ V G I P V+V Sbjct: 87 AVTGLREGSLLQSDMIVDRPA------LRPGQQEVAIMIDAATGVAGKITPGSTVNVYAT 140 Query: 158 --RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALV 208 V+++N RV+ + D T L+ + A+ + Sbjct: 141 FEGEREGDPDQSRVIVTNARVLDVGRLTALRPDENDRGREPTDAVPITFALSAIDAQRIT 200 Query: 209 AAQSVA-KLSLVLRSIA-DLNPSSSEDS 234 A+S A ++ L L + D S+ + Sbjct: 201 YAESFAQRVRLALVAPGTDTTVPDSQRT 228 >gi|269125159|ref|YP_003298529.1| SAF domain-containing protein [Thermomonospora curvata DSM 43183] gi|268310117|gb|ACY96491.1| SAF domain protein [Thermomonospora curvata DSM 43183] Length = 378 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 50/129 (38%), Gaps = 12/129 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + + VL + DL G + + V P V DG + D + G Sbjct: 40 AAVHPPAPAGVRVLTAARDLPGGTELREQDIRPVMMPSAAVPDGALRD--------RVVG 91 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 ++ P+ +G+ + +LV G L G AA + ++ ++A+ +++P D +DV Sbjct: 92 RVLAGPMRRGEIVTDTRLVGDG---LLKGYGPGTVAAPIRVADTAALR-LLRPGDRIDVF 147 Query: 156 MVRSLSERK 164 Sbjct: 148 ATAFSGGSG 156 >gi|300781680|ref|ZP_07091534.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] gi|300533387|gb|EFK54448.1| conserved hypothetical protein [Corynebacterium genitalium ATCC 33030] Length = 212 Score = 68.4 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 75/188 (39%), Gaps = 22/188 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 +T A VL +++ G ++ + +E PE V DG D V +++G + Sbjct: 33 VTGRAANDPAVLAFTREVSPGEPLSADDVELQRMPEAIVPDGAFDQVS------DVEGQI 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVD 153 V G+ + +L+ L S L G RA + + + M+ D V Sbjct: 87 VASTASAGEVVTPTRLLGPD---LVSALVPGDRADYTMVPVKL-AEPDIIPMLHHGDRVS 142 Query: 154 VVMVRSLSERKPTVTVVLSN-IRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 V + + E++ + +N + V+A + L L +A+A+ AA Sbjct: 143 V-VTINHGEQEGAARTIATNGVVVLA------GGAEDSPAGSVLLLLLHDEAEAVAAASL 195 Query: 213 VAKLSLVL 220 + L++VL Sbjct: 196 SSPLAVVL 203 >gi|254522254|ref|ZP_05134309.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14] gi|219719845|gb|EED38370.1| Flp pilus assembly protein CpaB [Stenotrophomonas sp. SKA14] Length = 343 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 37/156 (23%), Positives = 56/156 (35%), Gaps = 12/156 (7%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 +KLTR+ + + G+ L+A I M P + + I V+ + L G Sbjct: 2 LKLTRIAAVALIGLAVLLAVIALMIGRKPDAPVHVAPVASADPQAITVVEAVARLPAGEP 61 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T N L G +M + G + I +G I L G Sbjct: 62 ITANGLRLAQ--RTTPVAGAAT------SMSTVVGKVPVQDIAEGSAISTSALAQ----G 109 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 S L G+RA + + G I P D VDV + Sbjct: 110 FSLQLRPGERALAVPVDELVGAGNRILPGDFVDVFL 145 Score = 36.8 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLN-------PSSSEDSDVW 237 SDE +A L + A L+ KL L LR+ AD P + D Sbjct: 212 SDETRQPARSAVLAVPVADANRLLLGAQQGKLFLALRNPADTGLPDLALFPQAPGVIDPL 271 Query: 238 DVQEEGKEIQIIK 250 + +++ + + Sbjct: 272 RGLDAEQQVALQR 284 >gi|90412177|ref|ZP_01220183.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK] gi|90326901|gb|EAS43286.1| hypothetical protein P3TCK_27809 [Photobacterium profundum 3TCK] Length = 284 Score = 68.0 bits (165), Expect = 1e-09, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 83/245 (33%), Gaps = 37/245 (15%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M + I V + G +A L+S + E K+I V + LA G Sbjct: 1 MNSKIIFVIAFLAVLTGLYG-MADTLLSTTDTASTSATEEKEIKYITVWRATSPLARGQA 59 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 ++P+ L EE G DV L + + +G + E G Sbjct: 60 LSPSSLTREQLTEEAALSLGINSDVTLKFEPTTLMN----MDVKQGALVFPELQTSPGEA 115 Query: 120 GLSSLLPKG-KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT---------- 168 G +L+ +G + I+ + + I+P D++D++ V S T Sbjct: 116 GYLNLITRGDMTLYPLTIASKNLIDNYIQPGDYIDIMAVSSPRTNLSNTTSTLENFEGVR 175 Query: 169 --VVLSNIRVIAIDH------------NIDSDERVLVG------STATLELTPMQAKALV 208 +++ IRV+++ S R V ST +E+ P L Sbjct: 176 ASLLMQRIRVMSVGQSNTLAEKSGQRSTTTSTIRPKVNISNENESTVVIEVNPDDLAKLS 235 Query: 209 AAQSV 213 AQ Sbjct: 236 LAQRT 240 >gi|116671477|ref|YP_832410.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24] gi|116611586|gb|ABK04310.1| hypothetical protein Arth_2931 [Arthrobacter sp. FB24] Length = 259 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 21/188 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +RL+ VV+ + A+V ++ + + + + + VL+ + G Sbjct: 1 MK-SRLLAGVVAVLLAIVGAVLVVTYAQGADQRAVKDLDP-----VGVLVVTKAIPAGAT 54 Query: 61 VT--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + P V +D + E G + ++ G+ + EKLV + Sbjct: 55 VDTVKASVALEQVPGTAVAKSALDT------LDESAGKVAAANLVPGEQLLAEKLVAPED 108 Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE-----RKPTVTVVL 171 S +P G + + + VGG ++P DHV + + K T + + Sbjct: 109 LQTSGSMKVPAGLQEVSFQLEPQRVVGGRLQPGDHVGIFITMRSGGIEPKPEKETTQLSI 168 Query: 172 SNIRVIAI 179 + V A+ Sbjct: 169 HKVLVTAV 176 >gi|72160773|ref|YP_288430.1| hypothetical protein Tfu_0369 [Thermobifida fusca YX] gi|71914505|gb|AAZ54407.1| conserved hypothetical protein [Thermobifida fusca YX] Length = 214 Score = 67.2 bits (163), Expect = 2e-09, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 72/189 (38%), Gaps = 19/189 (10%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 + VL++ DL+ + +T + P V DG + + G + Sbjct: 40 RPPAPPAVEVLVAAHDLSGLVPLTDADTVARSIPAAVVPDGALAPGDP------VAGRAL 93 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 R P+ G+ + +L D G + L AA + ++ +++P +DV+ Sbjct: 94 RSPVRAGEILTEVRLADPPAAGYGADL----VAAPVRLAD-PGAAALLRPGSRIDVLAAA 148 Query: 159 SLS-----ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 T ++ + VI + + D +G+ L +T +A+AL + Sbjct: 149 GDPPVVDYPGPDTARRIVRDRPVITV--VAEDDAAHSLGTLIVLAVTDEEAQALA-GHAA 205 Query: 214 AKLSLVLRS 222 +LS+ +R Sbjct: 206 DRLSIAIRG 214 >gi|218680528|ref|ZP_03528425.1| hypothetical protein RetlC8_17240 [Rhizobium etli CIAT 894] Length = 166 Score = 66.8 bits (162), Expect = 3e-09, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%) Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST----ATLELTPMQAKAL--VAAQSVA 214 S + L N++V+A+ ++ V ++ T+E+TP +A+ L QS Sbjct: 82 SRTRVVTRTFLQNVKVLAVGAATTAEGAVTKANSTYNNVTVEVTPAEAEMLIFALGQSNG 141 Query: 215 KLSLVLRSIADLNPSS 230 L+LVLR+ AD Sbjct: 142 SLNLVLRNPADNTVED 157 >gi|254506045|ref|ZP_05118189.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] gi|219550863|gb|EED27844.1| Flp pilus assembly protein CpaB [Vibrio parahaemolyticus 16] Length = 267 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 94/234 (40%), Gaps = 24/234 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + V A++ G+ + + + T P KF +V + ++ V Sbjct: 1 MRTKLILAVAV---LAIIFGLYGLAGNLTRPTDSSSLQTAQPLKFYSVWQVRSQVSATDV 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 V P L+ + E+ D + + + + G + R + +G + +V + Sbjct: 58 VRPEHLQVLKIQED---DAALQGIAEDMLFEYPLGSIYRSDMAEGSLLYPTDIVAPNSPE 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RKP 165 L L G + +S + VGG+I+ + ++D++ + S + + Sbjct: 115 YLDLTLADGYVPYPLKVSPEAVVGGVIRASSYIDILALTSPTNVATIEVGSSATARGKAI 174 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTAT---LELTPMQAKALVAAQSVAKL 216 +++ VL ++V+ +D + + + T LEL Q L A+ +A L Sbjct: 175 SISPVLMGVKVLRVDQSDAKEATGEDVALETHLILELDRKQVSILSVAKQIATL 228 >gi|117927367|ref|YP_871918.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B] gi|117647830|gb|ABK51932.1| hypothetical protein Acel_0157 [Acidothermus cellulolyticus 11B] Length = 238 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 74/187 (39%), Gaps = 20/187 (10%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + +T P ++V++++ DL G + + AFP G + + E+ G Sbjct: 55 QSLTPRPPATVDVVVAQRDLPAGATIRDADVRLAAFPTNLQPAGTLHRLV------EVTG 108 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P+ +G+P+ + + G A + ++ AV + P VDV+ Sbjct: 109 RRLISPVRRGEPLTDVRFGGGAHP------APGLVAVPIHVAD-GAVTKLFSPGMSVDVL 161 Query: 156 MVRSLSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 + VV +++ V+A+ + D L+ + + QA+ L AQ+ Sbjct: 162 AADPDAPLGTPAVVVATDVDVLAVPSNGSDPAGDGSALLF----VAASAWQARLLAQAQA 217 Query: 213 VAKLSLV 219 + L L Sbjct: 218 RSPLVLA 224 >gi|254393097|ref|ZP_05008257.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] gi|197706744|gb|EDY52556.1| conserved hypothetical protein [Streptomyces clavuligerus ATCC 27064] Length = 205 Score = 66.5 bits (161), Expect = 3e-09, Method: Composition-based stats. Identities = 37/203 (18%), Positives = 73/203 (35%), Gaps = 22/203 (10%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D+A + P E VA P + + D + + G + + KG ++ + Sbjct: 15 ASDVAPYTALRPGQFEKVAVPRRWLPRTAVTD------LSTVRGKIAVTELRKGSLLQDD 68 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169 +V R L G++ + I ++ V G I P D V++ + Sbjct: 69 MIVKRPE------LAPGEQEIAIMIDAATGVAGKITPGDLVNIFATFAGKAEGDPDQSRI 122 Query: 170 VLSNIRVIAIDHNI-------DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLR 221 +++N +VI + D R+ T L A+ + A+S A+ + L L Sbjct: 123 IVTNAKVIDVGRLTPLDPRRDDRRSRMREAVPITFALGTKDAQRVAHAESFAEHVRLALL 182 Query: 222 SIADLNPSSSEDSDVWDVQEEGK 244 + + DS ++ + Sbjct: 183 AKGSPSTLRPGDSTYTLDEDRSR 205 >gi|134097376|ref|YP_001103037.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL 2338] gi|291009066|ref|ZP_06567039.1| hypothetical protein SeryN2_31485 [Saccharopolyspora erythraea NRRL 2338] gi|133909999|emb|CAM00111.1| hypothetical protein SACE_0770 [Saccharopolyspora erythraea NRRL 2338] Length = 183 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 14/197 (7%) Query: 25 RLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDV 84 L + V + + + VL++ DLA G V+ P+ + P E G + +V Sbjct: 1 MLATLAAVMALQPRPGPASDGVPVLVAARDLAPGHVLEPDDVARRTMPAELAPGGVLSEV 60 Query: 85 HQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 E G ++ G+P+ +L L++ A + ++ V Sbjct: 61 ------DEATGRVLGTASRSGEPLTDVRLAGPAQTALTTG-DPRHAAVPIRLAD-PDVAD 112 Query: 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQA 204 ++ P VD+V + R +V+ VIA+ D ++ G + L A Sbjct: 113 LLHPGRRVDIVTTAT---RSGNSSVLAEQAPVIAVRPTGDRHDQ---GRLIVVGLPEGLA 166 Query: 205 KALVAAQSVAKLSLVLR 221 A+ AA +++ LR Sbjct: 167 PAVAAASLTQSVTVTLR 183 >gi|317506822|ref|ZP_07964596.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316254896|gb|EFV14192.1| SAF domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 227 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 17/184 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ DL G + P L P + V +G A ++L G V P+ G+ Sbjct: 52 PVVVAAHDLKPGAALLPADLGIRRLPPDQVPEGAAT------AAEQLVGRTVAGPVRTGE 105 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-RSLSERKP 165 + +++ L++ +P+ R + + A+ M++P D VDV+ V + S Sbjct: 106 TLTDARVIAPRLAQLATSVPEA-RIVPVRLPDQ-ALADMLRPGDVVDVITVPQRQSGLPE 163 Query: 166 TVTVVLSNIR---VIAIDHNI-----DSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 T + +R V+A + R G A + + A+ + AA V ++ Sbjct: 164 DATTKQTGLRPPEVLARGAVVLLVSEPERSRSPEGRVALIAMADKPAQTVAAATLVQPVT 223 Query: 218 LVLR 221 ++LR Sbjct: 224 VILR 227 >gi|284991842|ref|YP_003410396.1| SAF domain-containing protein [Geodermatophilus obscurus DSM 43160] gi|284065087|gb|ADB76025.1| SAF domain protein [Geodermatophilus obscurus DSM 43160] Length = 244 Score = 66.5 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 18/203 (8%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWVAFPEENVFDGFIDDVHQP 87 +V+ + + ++VL+ +A G ++ P + G + D Sbjct: 24 AYVRGADARALAGVQTVDVLVVDRPVAEGTPGEELAELVRTERLPAKAAVPGAVTD---- 79 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL--PKGKRAATMDISISSAVGGM 145 + EL G + V + G+ + + G+ G+ + P+G ++ + AVGG Sbjct: 80 --LDELAGRVATVDLQPGEQLLAARFAVPGDLGVPGTVPAPEGTAEVSLLLEPQRAVGGR 137 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNIR--VIAIDHNIDSDERVLVGST------ATL 197 + D V V + R V+++ ++ +A+ +D G+ TL Sbjct: 138 LAAGDTVGVHVSLDGRTRAVLSRVLVTQVQGAPVAVADGEGTDTASSGGAAPSASLMVTL 197 Query: 198 ELTPMQAKALVAAQSVAKLSLVL 220 L P A+A+V + L L Sbjct: 198 GLRPEAAEAVVFGMEHGTVWLSL 220 >gi|262275470|ref|ZP_06053280.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP 101886] gi|262220715|gb|EEY72030.1| flp pilus assembly protein RcpC/CpaB [Grimontia hollisae CIP 101886] Length = 263 Score = 66.1 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 96/268 (35%), Gaps = 26/268 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M I + V G+ S + I V K + G + Sbjct: 1 MSQRVFFLIAFLSIAGGVLGL------SGFFQSKNTTASNISNISIKVAQLKTPVTRGDI 54 Query: 61 VTPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN- 118 VT + + + E E + G + DV + + G++ + + D + + + + Sbjct: 55 VTGDNIRYFRLRETEALEYGIVSDVV----ISPVSGMVAKKDLTTSDYLSMSDFILPSDP 110 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--------------RK 164 L +++ ++ I +G I D VDV+++ S + R Sbjct: 111 AYLDTVIDDHMTPYSLTIERKDFIGSGISVGDRVDVIILTSDEQNIGDTSRSNHIESFRS 170 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA 224 +V+ +L N+RV+AID + + T+EL Q +V A+ + + ++ S A Sbjct: 171 LSVSPLLRNVRVLAIDDGKEKENEKEEILPLTIELNRDQVAKMVIARRIGIIEVIKSSNA 230 Query: 225 DLNPSSSEDSDVWDVQEEGKEIQIIKAG 252 +D DV K + I+ Sbjct: 231 SQQRLLGMTADTHDVLPNFKSVTEIRGS 258 >gi|59713402|ref|YP_206177.1| tungstate-binding protein precursor [Vibrio fischeri ES114] gi|59481650|gb|AAW87289.1| tungstate-binding protein precursor [Vibrio fischeri ES114] Length = 261 Score = 66.1 bits (160), Expect = 5e-09, Method: Composition-based stats. Identities = 42/230 (18%), Positives = 90/230 (39%), Gaps = 22/230 (9%) Query: 1 MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK ++ + ++ +F L ++ + +P + +I I V K ++ Sbjct: 1 MKAKIIVVLAMITILFGLYGLAGSLSMFAPQN-----IIKPKEENKIKVWQLKENVNARD 55 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118 + ++ V PE + N + G + R + KGD I +E + + Sbjct: 56 EINRRLVSLVLLPESEANKLSFSEDVPINWNR---GTIYRHDLKKGDYISMEDFITPEED 112 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTV 169 + ++ + + I +GG+I VDV+ + E + ++T Sbjct: 113 NYIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDENRNSNRATKKTLSITP 172 Query: 170 VLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKL 216 + ++I+V+ + + + R+ LELT QA L+ A+ AK+ Sbjct: 173 IFTSIKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKI 222 >gi|332970970|gb|EGK09944.1| hypothetical protein HMPREF9374_2747 [Desmospora sp. 8437] Length = 245 Score = 65.7 bits (159), Expect = 7e-09, Method: Composition-based stats. Identities = 49/244 (20%), Positives = 92/244 (37%), Gaps = 34/244 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ V+S + A VAG + ++ + V ++K ++A ++ Sbjct: 5 KRRAIIFAVLSVLLATVAGFL--------FLEETAALQAGLGAPTTVYVAKQEIASREIL 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 P E P + V + D E+DG + VP+ KGD + L Sbjct: 57 RPEFFEAKEIPSKYVTSSMVTDPA------EIDGQVSVVPLGKGDQLTKSMLKP------ 104 Query: 122 SSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSL----SERKPTVTVVLSNIRV 176 + L G+ R + S D VD+++ KP TV + + + Sbjct: 105 ARQLNDGESRMVLLRTSDKVLFDDSFTAQDRVDIIVSYEKDPKTGAEKPKTTVFMKDKLI 164 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 + + S + +G +ELT +A+ LV A++ A VL++ + + + D Sbjct: 165 VGV-----SKNQKSIG----IELTLKEAEKLVYAENFAHSIRVLKAPQEQDMKKDNEKDA 215 Query: 237 WDVQ 240 D Sbjct: 216 QDDP 219 >gi|325964114|ref|YP_004242020.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans Sphe3] gi|323470201|gb|ADX73886.1| Flp pilus assembly protein CpaB [Arthrobacter phenanthrenivorans Sphe3] Length = 241 Score = 65.3 bits (158), Expect = 8e-09, Method: Composition-based stats. Identities = 36/206 (17%), Positives = 78/206 (37%), Gaps = 26/206 (12%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPN 88 +VQ + + +NVL+ K + G + L + P+ V G + Sbjct: 25 YVQGASARAQAGLEPVNVLVVKEKVPAGTKTSDLSAKLRVDSIPKSAVPAGALT------ 78 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LPKGKRAATMDISISSAVGGMIK 147 ++ + +G + V + G+ + +LVD + ++ +P+G T+ +S +GG ++ Sbjct: 79 SLDQQEGKVTAVALEPGEQLMATRLVDPRDLAPGTVPVPEGLEEVTLLLSPERILGGRLE 138 Query: 148 PNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST------------- 194 D V + + + ++ ++ + A+ SD + GS Sbjct: 139 AGDTVTIYSSFDKEDGQ--TGLLFHDVLITAV-QKAPSDSKNNSGSGSSEPAVEMPNGSA 195 Query: 195 -ATLELTPMQAKALVAAQSVAKLSLV 219 T + A L+ + KL L Sbjct: 196 FITFARSDSDASKLIYSAEFGKLWLA 221 >gi|325964122|ref|YP_004242028.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] gi|323470209|gb|ADX73894.1| SAF domain-containing protein [Arthrobacter phenanthrenivorans Sphe3] Length = 247 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 77/232 (33%), Gaps = 35/232 (15%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWV 69 + A+V ++ + + + ++VL+ K + G V L Sbjct: 6 AVALAIVGALLIIFYAQGADQRAI-----ATTQPVDVLVVKTAIPAGTPVNDMAASLALE 60 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL--SSLLPK 127 P V D + +++ G + V ++ G+ + E+LV + + +P Sbjct: 61 RMPAAGVSDTAL------SSLDNKAGTVSAVDLVAGEQLLAERLVAPADVKAQGAVEVPA 114 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-----ERKPTVTVVLSNIRVIAIDH- 181 G + + ++ VGG I DHV + + T + L + V A+ Sbjct: 115 GLQEVSFEVEPKRVVGGRINVGDHVGIALNFENGAYKAKADDATTQLTLRKVIVTAVQRA 174 Query: 182 -NIDSDERVLVGST-------------ATLELTPMQAKALVAAQSVAKLSLV 219 S E+ G T+ +T + A ++ L L Sbjct: 175 PQPASTEKPAEGEANSQDTTLPQGSLMITVAVTDVDAAKIIFTSINGTLWLT 226 >gi|148655421|ref|YP_001275626.1| SAF domain-containing protein [Roseiflexus sp. RS-1] gi|148567531|gb|ABQ89676.1| SAF domain [Roseiflexus sp. RS-1] Length = 338 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 79/282 (28%), Gaps = 77/282 (27%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVV--TPNILEWVAFPE---ENVFDGFIDD 83 P V P V+ ++ D+ V+ T L PE D + Sbjct: 30 PTPVPEALPQEPTPVPLRKVVAARVDIPANTVLTDTETFLTLRDIPEPEYNAAPDQYFT- 88 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDI 136 ++ EL + + + IR L GLS +P + +++ Sbjct: 89 -----SVNELTTKVTLRALNATEIIRARDLT---EAGLSFQVPLPDSPDTPRDKVFPLEV 140 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER-------------------------KPTVTVVL 171 + V I+P D VD+VM + ++ Sbjct: 141 GNLTGVADQIRPGDAVDLVMTYEIRRLIIRPSLTLDPETGQLVVTPLEETLVDRVTKTMV 200 Query: 172 SNIRVI-----AIDHNIDSDERVLVGSTAT----------------------LELTPMQA 204 N+RV+ AI + TA L +T +A Sbjct: 201 QNVRVLRVLKPAIPQEAGTPTPAGQQGTAPPPPPSSTQTPDTFVPGAQWILLLAMTDQEA 260 Query: 205 KAL--VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + + Q +++LVLR D + + + Sbjct: 261 EIVKFTLDQQDPKPQITLVLRGRDDSAIEDTTGITLRLLTSR 302 >gi|325676315|ref|ZP_08155994.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707] gi|325552876|gb|EGD22559.1| hypothetical protein HMPREF0724_13777 [Rhodococcus equi ATCC 33707] Length = 234 Score = 64.9 bits (157), Expect = 1e-08, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 VL++ DL G V+TP+ + VA P+ ++ +G + V + G V P+ G Sbjct: 65 APVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAG 118 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +L+ ++ R + ++ + +I+ D VDV+ V S Sbjct: 119 EMLTDVRLLGP-RLTEAAAGAPDARMVPVRLTD-PGLSELIRAGDRVDVLTVDQTSGPTE 176 Query: 166 TVTVVLSNIRVIAIDHNI 183 T + V+A D + Sbjct: 177 TRRPAAT---VLATDATV 191 >gi|197337610|ref|YP_002157811.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] gi|197314862|gb|ACH64311.1| Flp pilus assembly protein CpaB [Vibrio fischeri MJ11] Length = 261 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 89/230 (38%), Gaps = 22/230 (9%) Query: 1 MKLTRLMGIV-VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK ++ + ++ +F L ++ + +P + +I I V K D+ Sbjct: 1 MKAKIIVVLAMITILFGLYGLAGSLSMFAPQN-----IIKPKEENKIKVWQLKEDVNARD 55 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK-LVDRGN 118 + ++ V PE + N + G + R + KG I +E + + Sbjct: 56 EINRRLVSLVLLPESEANKLSFSEDVPINWNR---GTIYRHDLKKGAYISMEDFITPEED 112 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP---------TVTV 169 + ++ + + I +GG+I VDV+ + E + ++T Sbjct: 113 NYIEYVIAPNRVPFPLPIDSPDIIGGVIGNGSFVDVLALTKSDETRNSNRATKKTLSITP 172 Query: 170 VLSNIRVIAIDHNIDSDERVLVGS---TATLELTPMQAKALVAAQSVAKL 216 + ++++V+ + + + R+ LELT QA L+ A+ AK+ Sbjct: 173 IFTSVKVLQVKRTVIPETRIEPAKEGIVLILELTRSQAVELIVAKEAAKI 222 >gi|291447356|ref|ZP_06586746.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291350303|gb|EFE77207.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 207 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 78/201 (38%), Gaps = 22/201 (10%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 K ++A + E + P+ + + + D ++E++ + + +G ++ + Sbjct: 19 KTNVAPYTALNSGQFEKIKMPKRWLSENAVTD------LREVESKIAVTELRQGSLLQSD 72 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP--TVTV 169 +V + L G++ + I S+ V G I P V++ + ++ V Sbjct: 73 MMVRKPE------LRAGEQEIAIMIDASTGVAGKITPGATVNIYATFAGEQQGDPAQSKV 126 Query: 170 VLSNIRVI------AIDHNI-DSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLR 221 ++SN +V+ A+D + D R T L + + + A+S A+ + L L Sbjct: 127 IVSNAKVLDVGELTALDPSADDRGTRATEAVPITFALNTLDTQRVAYAESFAEHVRLALV 186 Query: 222 SIADLNPSSSEDSDVWDVQEE 242 + D +++ Sbjct: 187 APGSDGIIRPGDRTYTLDKDK 207 >gi|297563018|ref|YP_003681992.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847466|gb|ADH69486.1| SAF domain protein [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 218 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 70/188 (37%), Gaps = 16/188 (8%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 P VL++ DL +T L P +V A G+ + Sbjct: 43 RPAPVPVTRVLVASRDLGAADPLTEGDLTARDLPAGSVP------GGALAADTAAAGLRL 96 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ +G+ I +L D + G A + ++ AV G++ P VDV+ Sbjct: 97 NAPVRRGEVITDARLADP----PARAYGPGLVAVPVRVADPGAV-GLLSPGSRVDVLAAG 151 Query: 159 SLSERKPT----VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + P V+S+ V+A+ S + TP++A++L + + Sbjct: 152 GSDDLAPARAGPAVEVVSDRPVLALPEEESSGGGEGGALIV-VAATPVEARSLAGHAAAS 210 Query: 215 KLSLVLRS 222 +LS+ +R Sbjct: 211 RLSITIRG 218 >gi|326204373|ref|ZP_08194231.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] gi|325985405|gb|EGD46243.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] Length = 241 Score = 64.5 bits (156), Expect = 1e-08, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 84/221 (38%), Gaps = 28/221 (12%) Query: 4 TRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 RL+ ++ G+F +++ + + + + TE K + VL + + + Sbjct: 3 KRLVIKTVLICIGIFIILSATAWYFIFNTYKLDTE--------KNVTVLAASTKIDENTI 54 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + +++ + + D+ E G I +GD I L+ + Sbjct: 55 INESMIRKKTVKASAATENMVKDIS------ECTGSKSTGLIKEGDYIYRYNLISK---- 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV-IAI 179 S L RA + +I ++K VD+++ + +P +VLS +RV + Sbjct: 105 -SKLYADDIRAIVLPATIEDRAANLVKKGSLVDIIVQPKEASGRP--QIVLSKVRVDMVF 161 Query: 180 DHNIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLS 217 D + + E VGS L L Q + +A+ LS Sbjct: 162 DDSGINTEGSEVGSKKGFIKLLLNSNQRAKIYSARLAGTLS 202 >gi|312138618|ref|YP_004005954.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S] gi|311887957|emb|CBH47269.1| hypothetical protein REQ_11700 [Rhodococcus equi 103S] Length = 206 Score = 64.1 bits (155), Expect = 2e-08, Method: Composition-based stats. Identities = 30/138 (21%), Positives = 58/138 (42%), Gaps = 11/138 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 VL++ DL G V+TP+ + VA P+ ++ +G + V + G V P+ G Sbjct: 37 APVLVAAHDLTPGTVLTPDDVRVVARPDPDLPEGSVRVVA------DASGRTVASPVRAG 90 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +L+ ++ R + ++ + +I+ D VDV+ V S Sbjct: 91 EMLTDVRLLGP-RLTEAAAGAPDARMVPVRLTD-PGLSELIRAGDRVDVLTVDQTSGPTE 148 Query: 166 TVTVVLSNIRVIAIDHNI 183 T + V+A D + Sbjct: 149 TRRPAAT---VLATDATV 163 >gi|296393686|ref|YP_003658570.1| SAF domain-containing protein [Segniliparus rotundus DSM 44985] gi|296180833|gb|ADG97739.1| SAF domain protein [Segniliparus rotundus DSM 44985] Length = 227 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 34/166 (20%), Positives = 63/166 (37%), Gaps = 12/166 (7%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 LVA + + +++ DL G+ + P L + +V Sbjct: 22 LVAARRVAAGLLLLLAGGLAIRAHARPGQAAAVVAAHDLRPGVALGPADLAVRSLSPGDV 81 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDI 136 G + D Q L G V P+ G+ + +++ GL++ +P RA ++ + Sbjct: 82 PAGAVADPRQ------LLGRTVAGPVRSGEALTDVRIITPRLAGLATAIPDA-RAVSVRL 134 Query: 137 SISSAVGGMIKPNDHVDVVMV-RSLSERKPTVTVVLSNIR---VIA 178 + + M++P D VDVV V + + IR V+A Sbjct: 135 PDQT-LADMLRPGDVVDVVTVPQHQPGATEDAATKQTGIRPPEVLA 179 >gi|225389628|ref|ZP_03759352.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme DSM 15981] gi|225044308|gb|EEG54554.1| hypothetical protein CLOSTASPAR_03376 [Clostridium asparagiforme DSM 15981] Length = 281 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 51/274 (18%), Positives = 103/274 (37%), Gaps = 41/274 (14%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S V A V +A+ I ++ + G Sbjct: 3 MKLNNRFIFGILSLVLAAVIAFVAL-----------PTIARQTNGKAEIVRITQPVLKGE 51 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + E V N+ ++ +++G+ V + +GD I K+ Sbjct: 52 KITSDNAEVVEVGGYNLPSNVAH------SLSDVEGLYVTADLAEGDYILTSKVSSVPVS 105 Query: 120 GLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 +L +P GK A +M + +++S + ++PND + + +E P L ++V Sbjct: 106 SDVALNDIPSGKVAISMTVKTLASGLSDKLQPNDIIRIYHFLETAEEVPE----LRFVKV 161 Query: 177 IAID----------HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADL 226 +++ DE +T T+ TP QA+ + ++ + L S + Sbjct: 162 LSVTDSDGVNVDNTKEPTEDEERQQSATITVLATPEQARIITEMENDGVAHVALISRNND 221 Query: 227 NPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKDGE 260 + + + K +Q I + +DGE Sbjct: 222 QLAEE------LLAAQDKTLQEIYFPETLTEDGE 249 >gi|326202872|ref|ZP_08192739.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] gi|325986949|gb|EGD47778.1| SAF domain protein [Clostridium papyrosolvens DSM 2782] Length = 216 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 36/225 (16%) Query: 3 LTRLMG---IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 RL+ ++ G+F ++ I + + + + TE K + V+++ ++ G Sbjct: 2 SKRLIIKTILICLGLFLILDSAIFAYIFTKYPINTE--------KTVAVVVATENIKEGT 53 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V+ L V G ++ + G I + D IR L++R + Sbjct: 54 VIEEGFLRKKQVYASGVNSGVETEI------GNVAGKKALTNIHRDDYIRAHDLLERKDW 107 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176 +R + +S+ + +I+ +VD+ + R SE +L I+V Sbjct: 108 Y-----RDDERIIILPVSMEERLANLIRKGSYVDIRLQRDTSE---VTEDILYKIQVKDV 159 Query: 177 -----IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 IA+D + + L L + + +A KL Sbjct: 160 LDDAGIALDSKSAVNSKTAYLK---LILGKTDREKIYSASRSGKL 201 >gi|302536562|ref|ZP_07288904.1| flp pilus assembly protein CpaB [Streptomyces sp. C] gi|302445457|gb|EFL17273.1| flp pilus assembly protein CpaB [Streptomyces sp. C] Length = 207 Score = 63.8 bits (154), Expect = 2e-08, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 68/175 (38%), Gaps = 24/175 (13%) Query: 49 LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +++ K D+A +T E V P+ + D +DD + L G + + KG Sbjct: 41 VVAYRVKSDIAPYSALTAGQFEEVKVPKRWLSDTAVDD------LGALRGKIALTTLKKG 94 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 ++ + VD+ L G++ + I ++ V G I V+++ ++ Sbjct: 95 SLLQSDMFVDKPQ------LQAGEQEIAIMIDAATGVAGKITSGAKVNIIATFKGAKETD 148 Query: 166 TVT--VVLSNIRVI------AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 ++++N RV+ A+D + D T L + + A+S Sbjct: 149 PSRSVIIVANARVLGVGKLTALDKDSDRKGPAEAVP-ITFALNTKDTQRVAYAES 202 >gi|311697131|gb|ADQ00003.1| pilus assembly, Flp-type CpaB [marine bacterium HP15] Length = 305 Score = 63.8 bits (154), Expect = 3e-08, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 84/236 (35%), Gaps = 16/236 (6%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + + V G+ G Q + E +I+K L G V+ + Sbjct: 19 ISLAVYGLLLDTPGTARQMSSLASEGQVQRPTEEPELPSFTYVIAKQTLQAGEVLERTAV 78 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V + + G + + KG PI L + + LL Sbjct: 79 MAV--------ESTEELEGLVELESLPFGEPLTARVDKGLPISRSLLELQNP--VQQLLE 128 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-VLSNIRVIAIDHNID- 184 +G +A ++++ S+VGG+I+P D VD+ S + V+ + S I V+A+ Sbjct: 129 RGHKAVAVELTNLSSVGGLIRPGDSVDIFASFSEEDGASAVSTRLFSAIPVLAVRGATSV 188 Query: 185 ----SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDV 236 D+ T L + L A S ++L+ + +P S+ + V Sbjct: 189 TDDLDDDERRRNPTMVLAIPESDMSKLTLALSESRLTFAATKPIEEDPVSTVTAGV 244 >gi|163840497|ref|YP_001624902.1| hypothetical protein RSal33209_1753 [Renibacterium salmoninarum ATCC 33209] gi|162953973|gb|ABY23488.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC 33209] Length = 227 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 68/192 (35%), Gaps = 17/192 (8%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 +T L + DL G ++ + + + P + + Q G Sbjct: 44 LTPANQPVETALAASKDLPAGSTISASDMVLLKVPLAAIPQAALARPSQA------IGQQ 97 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + KG + L+ + L + P G A + +S + ++ P V VV+ Sbjct: 98 LAGALRKGQILTDTSLLGQ---SLLTGTPAGSVAVPLRLSDA-GTAKLVAPGQLVTVVLT 153 Query: 158 RSLSERKPTVTVVL-SNIRVI--AIDHNIDSDERVLVGS----TATLELTPMQAKALVAA 210 S + VL ++I V+ + L G + + Q+K L A Sbjct: 154 NEDSTGRAENGTVLAASIPVLWSQTGAQTANGNSWLPGKEADGLVVVAASAEQSKTLAGA 213 Query: 211 QSVAKLSLVLRS 222 + K+SLVL S Sbjct: 214 STRGKISLVLVS 225 >gi|257057235|ref|YP_003135067.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017] gi|256587107|gb|ACU98240.1| SAF domain-containing protein [Saccharomonospora viridis DSM 43017] Length = 221 Score = 63.4 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 20/182 (10%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + VL++ L +G ++ + + P E DG + Q + Sbjct: 56 PRVPVLVAARTLPLGSTLSEDDVRVAEVPAELRPDGALVTPDQA------VDRRLVGAAR 109 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 +G+P+ + +D NG P G + ++ + + +++ VDVV + E Sbjct: 110 EGEPLTDLRFLDARNG------PPGSTTVPLRLTDA-GMTRLLRSGTRVDVV---TPGEG 159 Query: 164 KPTVTVVLSNIRVIAIDH-NIDSDERVLVGST---ATLELTPMQAKALVAAQSVAKLSLV 219 V+ N V+++ D D+ L + + QA + AA +++ Sbjct: 160 VRQARVLAENATVVSVVTPEPDRDDSPLARQNTPLVLVSVPDEQAPHVAAAALGNPVTVT 219 Query: 220 LR 221 LR Sbjct: 220 LR 221 >gi|295396211|ref|ZP_06806393.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] gi|294970999|gb|EFG46892.1| conserved hypothetical protein [Brevibacterium mcbrellneri ATCC 49030] Length = 173 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 60/162 (37%), Gaps = 18/162 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 ++++ + G V+T ++ FP + + + + D Q + G + G Sbjct: 11 RIVVAHTRIDPGTVITARLVTTRVFPPQLIPENAVTDPAQ------VVGTTSASSLDAGT 64 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+ L++ + +P G + +S + +++P + V S Sbjct: 65 PVTTTALLESA----PANIPPGHVRVPISVSDPATTS-VLRPGHRIQVYSSTSEEANS-- 117 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 ++ + V+++ +D+ S T+ ++ A L Sbjct: 118 ---LVDDALVVSV--TTANDQFTGQTSVVTIAVSQEDAPKLA 154 >gi|254381960|ref|ZP_04997323.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194340868|gb|EDX21834.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 205 Score = 63.0 bits (152), Expect = 4e-08, Method: Composition-based stats. Identities = 35/205 (17%), Positives = 75/205 (36%), Gaps = 23/205 (11%) Query: 49 LIS---KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +++ KGD+A ++ E + P+ + D + D + L + + KG Sbjct: 13 VVAYRVKGDIAPYSPLSAGQFEQITVPKRWLSDTAVSD------LGALKDKIALTTLKKG 66 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE--R 163 ++ + V R L G++ + I ++ V G I P V+++ + Sbjct: 67 SLLQTDMFVARPQ------LQAGEQEIAIMIDAATGVAGKITPGARVNILGTFKGKKPTD 120 Query: 164 KPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LS 217 V+++ RVI + + T L+ + + A+S A+ + Sbjct: 121 PDQSLVMVAGARVINVGKLTPLDKTSDKKGPSEAVPITFALSTKDTQRVAYAESFAEHVR 180 Query: 218 LVLRSIADLNPSSSEDSDVWDVQEE 242 L L + +P S D ++ Sbjct: 181 LALVAAGPESPVSPGDRSYTLEGDK 205 >gi|163846106|ref|YP_001634150.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222523842|ref|YP_002568312.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667395|gb|ABY33761.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl] gi|222447721|gb|ACM51987.1| SAF domain protein [Chloroflexus sp. Y-400-fl] Length = 350 Score = 63.0 bits (152), Expect = 5e-08, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 114/329 (34%), Gaps = 96/329 (29%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHV-----QTEEVITENPA-KFINVLISKGD 54 M+ L+ +++ G+ ++ G+ A L+ QT EV A ++V+ ++ D Sbjct: 1 MRRGALLFLLI-GLIVIIGGLAAFLLLRGGAATSTTSQTPEVPPPPTAVPLVSVVQARVD 59 Query: 55 LAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 L ++ P++L+ V P D+ ++ + + ++ G L+ P++ G IR + + Sbjct: 60 LEANTLLNDPSLLDVVEVPVTE-----FDEANEFSNINDVLGKLLINPVVAGQSIRKDNI 114 Query: 114 VDRGNGGLSSLLP---KGK---RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-- 165 GL+ +P G+ +A + ++ S V + ND VDV+ S+ + Sbjct: 115 ---REAGLAQRIPTAEPGQAQVKAYPLIVNSLSGVADQVAVNDFVDVIATFSVERQIIRP 171 Query: 166 ---------------------------TVTVVLSNIRVI--------------------- 177 + ++ +V+ Sbjct: 172 GPVQVITVNDVDQLVREYQYGENQTFFSTKTIIQRAQVLQIVRPALPAPTEGEETTTEAV 231 Query: 178 ------------AIDHNIDSDERVLVGST-----------ATLELTPMQAKALVAA-QSV 213 A I + G+T L LT + + L A QS Sbjct: 232 TPPASSSLPQVDASGQPITGAQTAEGGATTPSTLTEGVWVVVLALTDQEIELLEFALQSQ 291 Query: 214 AKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 A++ L LR D S+ + + E Sbjct: 292 ARIVLALRGANDDAIESTSGVTLDLLVRE 320 >gi|317133732|ref|YP_004089643.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7] gi|315450194|gb|ADU23757.1| hypothetical protein Rumal_3294 [Ruminococcus albus 7] Length = 253 Score = 62.6 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 35/232 (15%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + ++++ + A+V G + + + + + D G + ++L Sbjct: 9 ILLILAVISAIVTGTLIYKYCNSTKG--------------FIYVFNDDYKAGAKIEKSML 54 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV------PILKGDPIRLEKLV-DRGNG 119 + ++ + G + E +V ++K P+ L L G+ Sbjct: 55 SPMKVDDQIIKTGQKGGLESYYITGENYSKVVERNEYLLNDVVKNQPLTLVDLAMTSGSS 114 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 SL G A T+ IS ++AV ++ V++ S ++ N+R+IA Sbjct: 115 IERSLSGNGM-AVTIPISGTAAVTDELRVGSVVNIY-----SSDASGTKLLFENMRIIA- 167 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIA-DLNPSS 230 S T E +P L+ A + KL L S D N S Sbjct: 168 ------RNNENSVSKVTFETSPDDTLDLINAANNKKLYFSLVSPVLDENAHS 213 >gi|118469802|ref|YP_889718.1| hypothetical protein MSMEG_5481 [Mycobacterium smegmatis str. MC2 155] gi|118171089|gb|ABK71985.1| conserved hypothetical protein [Mycobacterium smegmatis str. MC2 155] Length = 216 Score = 62.6 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 57/147 (38%), Gaps = 9/147 (6%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 ++V ++ DL G +T + + + DG DV + G + P+ +G Sbjct: 53 VDVAVAARDLVPGTALTAEDVRLESRSASTLPDGAQSDV------GAIVGATLAGPMRRG 106 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +++ L+ + R + + + A+ +I+ D VDV+ + Sbjct: 107 EVLTDVRVIGSRLADLA--VGPDARIVPLSLGDA-ALLDVIRAGDVVDVLTTHDEEAKSA 163 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVG 192 T ++ S+ V+ + + V Sbjct: 164 TPRLIASDAVVVLVSQKPKGAGQDRVA 190 >gi|289675700|ref|ZP_06496590.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae FF5] Length = 160 Score = 62.6 bits (151), Expect = 5e-08, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 30/170 (17%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFI---------------- 46 ++ + +V++ +F L A I A ++ + P++ + Sbjct: 1 MSSRITLVLAVLFLLGALIAAYLGIAVSKPAEAPAVVIPPSEPVTTETAIQTPPTPHVEE 60 Query: 47 ----NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 NV++ D+ +T + L + G A+ ++ G + Sbjct: 61 ALRHNVVVLARDIPAYTAITADDLTIERL--KVAPLGSF------EAIDKIVGRSSWRTL 112 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 G + G L+ ++ +RA + + + G + P D+V Sbjct: 113 TAGSWLTESNFEAGGT--LARMIRPHERALALQVDEVTGASGQLSPGDYV 160 >gi|288870575|ref|ZP_06114611.2| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] gi|288866630|gb|EFC98928.1| Flp pilus assembly protein CpaB [Clostridium hathewayi DSM 13479] Length = 275 Score = 62.6 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 31/198 (15%), Positives = 73/198 (36%), Gaps = 23/198 (11%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 I ++ + G ++T +E N+ + +++ G Sbjct: 28 PTIARQTNGKTEIVRVSKPVLKGAIITDKNVELAEVGSYNLPANI------ARSTEDVVG 81 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHV 152 +++GD I K+ +L +P G+ A ++ + +++S + ++ D V Sbjct: 82 KYAVSDLMEGDYILSSKISALPLTSDIALNDIPSGRVAISLSVKTLASGLSDKLQAGDIV 141 Query: 153 DVVMVRSLSERKPTVTVVLSNIRVIAI--------DHNID--SDERVLVGSTATLELTPM 202 + + P L +RV+++ D+ + DE +T T+ TP Sbjct: 142 RIYHFLETAREIPE----LRFVRVLSVTGADGTNIDNTAEPAEDEEKQQSATVTVMATPE 197 Query: 203 QAKALVAAQSVAKLSLVL 220 QA+ + ++ + L Sbjct: 198 QARIITELENDGVAHVAL 215 >gi|220913391|ref|YP_002488700.1| SAF domain protein [Arthrobacter chlorophenolicus A6] gi|219860269|gb|ACL40611.1| SAF domain protein [Arthrobacter chlorophenolicus A6] Length = 251 Score = 62.6 bits (151), Expect = 6e-08, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 68/208 (32%), Gaps = 33/208 (15%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 VL+ + + G + L P + + ++ Sbjct: 31 ARAMASTNPKKVLVVEKPIPAGTPINDMTASLVIEDVPATAIAPTALT------SLDSKA 84 Query: 95 GVLVRVPILKGDPIRLEKLVDR----GNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 G + V ++ G+ + E+LV GG+ +P G + T ++ VGG I+ D Sbjct: 85 GTVAAVDLVPGEQLLAERLVAPEALKAEGGV--QIPPGLQEVTFELEPKRVVGGRIQAGD 142 Query: 151 HVDVVMVRSLSERK-----PTVTVVLSNIRVIAIDH--NIDSDERVLVGST--------- 194 HV + + K + + L + V AI S E GS Sbjct: 143 HVGIGFSFAGGADKAKPADASTQLTLRKVTVTAIQRAPQAASAEAPADGSNPQDTTLPQG 202 Query: 195 ---ATLELTPMQAKALVAAQSVAKLSLV 219 T+ + + A ++ A + L L Sbjct: 203 SLMVTVAVNDIDATKIIYASNNGDLWLT 230 >gi|260892668|ref|YP_003238765.1| SAF domain protein [Ammonifex degensii KC4] gi|260864809|gb|ACX51915.1| SAF domain protein [Ammonifex degensii KC4] Length = 221 Score = 62.2 bits (150), Expect = 8e-08, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 83/219 (37%), Gaps = 33/219 (15%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 ++ + GV A +A A+++ P + V+++ D+ VG VV P+ Sbjct: 23 VLMSALFGVAAGLAVWFALQVARP---------------TVPVVVALRDMQVGHVVRPDE 67 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GGLSS 123 + +P V + + G ++ +GD +R ++L G+ L S Sbjct: 68 VAVRKYPPVAVPPDAVRKPEEAVGKTVTGGAVL-----QGDVLRKKRLSAEGSLEASLKS 122 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVVLSNIRVIAIDHN 182 L P G A + + + G ++ D VD+ + K + VV + ++ Sbjct: 123 LAPPGWVAVQLPEGSAQGMLG-LRRGDRVDIYAETPTPGGAKQVLPVVRGAVLLLTPFQE 181 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVA-KLSLVL 220 + + P A+AL A K+SLVL Sbjct: 182 --------GAKCYVVAVPPDSAQALAAIDVYGKKVSLVL 212 >gi|220927571|ref|YP_002504480.1| SAF domain protein [Clostridium cellulolyticum H10] gi|219997899|gb|ACL74500.1| SAF domain protein [Clostridium cellulolyticum H10] Length = 218 Score = 61.8 bits (149), Expect = 8e-08, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 63/181 (34%), Gaps = 25/181 (13%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K ++V+++ D+ G V+ L E V D+ ++G I Sbjct: 38 KQVSVVVATADIKKGTVIEERFLRKKDVWESTVNSSIERDI------GNIEGKKALTDIY 91 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 K D IR L+++ + +R + ++ + +I+ +VD+ R + Sbjct: 92 KDDYIRSCDLLEKKDWY-----KDDERIIVLPTNMEERLANLIRKGSYVDI---RLQKDS 143 Query: 164 KPTVTVVLSNIRV--------IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 +L I+V A+D + + L + + + +A + Sbjct: 144 GEATEDILYKIKVEDVLDETGTALDSKSAVNSKTAYFKLV---LGKKERQKIYSAAKNGR 200 Query: 216 L 216 L Sbjct: 201 L 201 >gi|228969168|ref|ZP_04130064.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790514|gb|EEM38219.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|326943829|gb|AEA19719.1| hypothetical protein CT43_P72025 [Bacillus thuringiensis serovar chinensis CT-43] Length = 269 Score = 61.8 bits (149), Expect = 9e-08, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 70/189 (37%), Gaps = 21/189 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + A + ++A+ V E + V +K D+ Sbjct: 1 MKKKSTPKKLAITLAASIGLVVAI-------VGYENYAVSSKVNLQKVYFTKVDIPPRTK 53 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T ++L+ ++ I + + ++G +++ + K+V + Sbjct: 54 ITKDMLQVREVSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELP 109 Query: 121 LSSL--LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------V 170 +++ L + A + + I ++ G I P HVD+ ++ ++ V + Sbjct: 110 DAAILNLKPSEVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRI 169 Query: 171 LSNIRVIAI 179 ++RV A+ Sbjct: 170 AKHVRVTAV 178 >gi|228943039|ref|ZP_04105540.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228955921|ref|ZP_04117858.1| Hypothetical secreted protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228976628|ref|ZP_04137071.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228783097|gb|EEM31233.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228803748|gb|EEM50430.1| Hypothetical secreted protein [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816624|gb|EEM62748.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 263 Score = 61.4 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 61/181 (33%), Gaps = 19/181 (10%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + +L VS + A+ E + V SK D+ +T Sbjct: 1 MKKLPKKTVSVLIAVGLVATIAGY--------ENYKINSAINPTKVYYSKVDIPPRTKIT 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 ++L+ P + + I +V ++G + K + +K+V + + Sbjct: 53 KDMLQERVIPGDAIAPNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDA 108 Query: 123 SLLPKGKRAATMD--ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIR 175 ++L K + I ++ G I P+ +VD+ + V ++R Sbjct: 109 AILNLKKSEVAFPLLVDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVR 168 Query: 176 V 176 V Sbjct: 169 V 169 >gi|167771223|ref|ZP_02443276.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM 17241] gi|167666642|gb|EDS10772.1| hypothetical protein ANACOL_02581 [Anaerotruncus colihominis DSM 17241] Length = 279 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 35/234 (14%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S + A V +A+ I ++ + G Sbjct: 1 MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117 ++ E V N+ + +++G+ + GD I K+ V Sbjct: 50 QISSENAEVVEVGGYNLPSNIAH------QLSDVNGLYATADLAVGDYILTSKISSVPVS 103 Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + + +P GK A ++ + +++S + ++P D + + + P L ++V Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159 Query: 177 IAI----------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +++ DE +T T+ +P QAK + ++ + L Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVAL 213 >gi|296118260|ref|ZP_06836841.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306] gi|295968818|gb|EFG82062.1| putative secreted protein [Corynebacterium ammoniagenes DSM 20306] Length = 223 Score = 61.1 bits (147), Expect = 1e-07, Method: Composition-based stats. Identities = 38/182 (20%), Positives = 72/182 (39%), Gaps = 19/182 (10%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKG 105 +L+ D+ G +T V P + + +G + D E+ G ++ P + G Sbjct: 38 EILVFARDVDAGQELTAADTHLVRVPHDVIPDEGALHDP------DEVVGRIITAPAVAG 91 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +L+ L+S L G + ++ + ++ D V+VV + Sbjct: 92 EFVTELRLLGDE---LTSQLVPGGHMVPLKLAEPDLIS-LLHHGDTVNVVSSQEDELSPG 147 Query: 166 TVT--VVLSNIRVIAIDHNIDSD----ERVLVGSTAT--LELTPMQAKALVAAQSVAKLS 217 + + RVIA +I + VGS AT L L QA+ + +A L+ Sbjct: 148 LFSPLTIAEGARVIATSADISAGAHASSNASVGSPATILLALPADQAQLVASASLSQPLT 207 Query: 218 LV 219 +V Sbjct: 208 VV 209 >gi|223984146|ref|ZP_03634297.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM 12042] gi|223963878|gb|EEF68239.1| hypothetical protein HOLDEFILI_01590 [Holdemania filiformis DSM 12042] Length = 238 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 40/228 (17%), Positives = 80/228 (35%), Gaps = 24/228 (10%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK +V + AL A ++ + S + E+ ++V IS L + Sbjct: 1 MKKK-----IVFTLTALTAVLV--LIFSGIFLFRRELTRR--LSLVSVPISVSTLPPRHL 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAM-QELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + L W+ P + + + + + L+G + + + Sbjct: 52 ITVDDLTWIDVPSAYLQADILWEEAELVGLWTRLEGTIPAGSFFYQEMLD----APEAMA 107 Query: 120 GLSSLLPKGKRAA---TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 S L +A + IS S +++P VD+ + E + + +L +RV Sbjct: 108 DFSVTLLNKDQAVFPLAVTISEISGQ--LMQPGQQVDLYVYGKWPEGQEMMDCLLRGVRV 165 Query: 177 IAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + + I + L ST L + L A+ ++ L L Sbjct: 166 LELQNRNGERIGQADDTLP-STVLLAVDQTYLAYLSIAEKKGRIELYL 212 >gi|283795336|ref|ZP_06344489.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|323484181|ref|ZP_08089551.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum WAL-14163] gi|291076992|gb|EFE14356.1| putative Flp pilus assembly protein CpaB [Clostridium sp. M62/1] gi|323402623|gb|EGA94951.1| hypothetical protein HMPREF9474_01302 [Clostridium symbiosum WAL-14163] Length = 279 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 84/234 (35%), Gaps = 35/234 (14%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MKL R + ++S + A V +A+ I ++ + G Sbjct: 1 MKLNNRFIFGILSLLLAAVIAFVAL-----------PTIARQTNGKEEIVRITQPVLKGE 49 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL--VDRG 117 ++ E V N+ + +++G+ + GD I K+ V Sbjct: 50 QISSENAEVVEVGGYNLPSNIAH------QLSDVNGLYATADLAVGDYILTSKISSVPVS 103 Query: 118 NGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + + +P GK A ++ + +++S + ++P D + + + P L ++V Sbjct: 104 SDVALNSIPSGKVAISLTVKTLASGLSDKLQPGDIIRIYHFLDTAAEVPE----LRFVKV 159 Query: 177 IAI----------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 +++ DE +T T+ +P QAK + ++ + L Sbjct: 160 LSVTDSDGINVDNAKEPTEDEEKQQSATITVLASPEQAKIITGLENDGVAHVAL 213 >gi|220913382|ref|YP_002488691.1| hypothetical protein Achl_2637 [Arthrobacter chlorophenolicus A6] gi|219860260|gb|ACL40602.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 258 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 43/265 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK RL+G + + V A+ ++ + VQ + + VL+ + + G Sbjct: 1 MK-ARLLGGIAALVIAIAGTVLLIAY-----VQGADARAMAGTETAEVLVVQAPIPAGTP 54 Query: 61 VTP--NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 + ++ + P+ + + ++ + + V ++ G+ + +LV+ + Sbjct: 55 ASEISGMVAKKSLPKSALTGDTVTNLKEEGT------KVTAVSLVPGEQLLASRLVEAAS 108 Query: 119 --GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM-------VRSLSERKPTVTV 169 G +P G + ++ + I VGG I D V V + + + + Sbjct: 109 FMGPSRVAVPGGMQEISLKLPIERVVGGKIAAGDTVGVFISLTETSGSGDNAAQSSGTQL 168 Query: 170 VLSNIRVIAID-------HNIDSDERVLVGS------------TATLELTPMQAKALVAA 210 + V A D GS T+ + A+ +V A Sbjct: 169 TFHKVLVTATQYSNGSPSQASSGDAGASEGSLSSNENQSDGNYLITVASNSVDAERMVYA 228 Query: 211 QSVAKLSLVLRSIADLNPSSSEDSD 235 K+ L + D +S D Sbjct: 229 AEFGKVYLS-KEPKDATEGNSGVVD 252 >gi|312126639|ref|YP_003991513.1| SAF domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776658|gb|ADQ06144.1| SAF domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 208 Score = 61.1 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 58/177 (32%), Gaps = 29/177 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MKL ++ + + A L++ T N ++ ++++K D+ G Sbjct: 1 MKLKKIGLFFIFLILAAGLAFAEYYLLTN---------TANKPQYQLIIVAKQDIPAGAQ 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L VH +++ G I G+PI E L D Sbjct: 52 ITLDKLSVARV-------DVRTPVHAATTRKQILGRYALYDIKAGEPIIPEHLTDLSIDT 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 L+ G + + I I D +++ V + +RVI Sbjct: 105 LA----NGMKLTAVRIDPVP--YDFINIGDEIELGCVIQD-------KTLSWRVRVI 148 >gi|309792344|ref|ZP_07686813.1| SAF domain-containing protein [Oscillochloris trichoides DG6] gi|308225610|gb|EFO79369.1| SAF domain-containing protein [Oscillochloris trichoides DG6] Length = 347 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 51/305 (16%), Positives = 94/305 (30%), Gaps = 83/305 (27%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 T+ ++V+ ++ D+A V+ +E V + + Q + Sbjct: 35 GGSPATDVTSEPTAIPLVDVVHARFDIAANTVIKDTDVELVK-----IKQTEFNPDTQSS 89 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG------KRAATMDISISSAV 142 + ++ G L I+ PI + L++ G LS +P +A + ++ S V Sbjct: 90 NLMDVVGKLTTSKIVAEQPINTKNLIEPG---LSQQIPTAEADRSTNKAYPLIVNNLSGV 146 Query: 143 GGMIKPNDHVDVVMVRSLSERKP----------------------------TVTVVLSNI 174 IKP D VDVV+ + R+ T ++ Sbjct: 147 SDQIKPGDFVDVVVTFQIPRRQSYPTGLTYEEVGGQMIPMIERELKDELFYTTKTIVQRA 206 Query: 175 RVIAI--DHNIDSDERVLVGS------------------------------------TAT 196 +V+ I +E + GS T Sbjct: 207 QVLKILRPQVALPEETPVAGSDAPVNSSSLPEVDASGQPIAPGTEADTTGSISQGAWTLV 266 Query: 197 LELTPMQAKALVAAQSVA-KLSLVLRSIADLNPSSSEDS--DVWDVQEEGKEIQIIKAGV 253 L + + + + A S ++ LVLR D + D+ + Q I A V Sbjct: 267 LSVNDQEVELIEFALSTNSRIVLVLRGAGDTEFEETIGVTYDLLTSEFGVPVPQQIPANV 326 Query: 254 IVNKD 258 + D Sbjct: 327 LDTDD 331 >gi|228968939|ref|ZP_04129887.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] gi|228790746|gb|EEM38399.1| Hypothetical secreted protein [Bacillus thuringiensis serovar sotto str. T04001] Length = 267 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 62/166 (37%), Gaps = 12/166 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 V+ +IA+ LV+ E + V SK D+ +T ++L+ P + + Sbjct: 13 VSVLIAVGLVAT-IAGYENYRINSAINPTKVYYSKVDIPPRTKITKDMLQERVIPGDAIA 71 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD-- 135 I +V ++G + K + +K+V + +++L K Sbjct: 72 PNAITNVKDLEGKYTVNG----FGVSKNSLLYKDKVVPKDELPDAAILNLKKSEVAFPLL 127 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV-----VLSNIRV 176 + I ++ G I P+ +VD+ + V ++RV Sbjct: 128 VDIETSSGNSIIPDSYVDLYFKGKVKNESDHTEKPIFGRVAKHVRV 173 >gi|310830431|ref|YP_003965532.1| hypothetical protein PPSC2_p0070 [Paenibacillus polymyxa SC2] gi|309249898|gb|ADO59464.1| Putative uncharacterized protein [Paenibacillus polymyxa SC2] Length = 291 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 76/218 (34%), Gaps = 29/218 (13%) Query: 1 MKLT-RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 M+ +L+ V+ F +G+ + Q ++ + VL++K D++ G Sbjct: 1 MRGKNKLLLTVLLITFVATSGMF--------YYQNVYAPKQDEKNKVFVLVAKKDISEGA 52 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 TP+ + + + V FI + E+ G + + + + +G Sbjct: 53 AFTPDNIGAIKMDKNMVLPNFITN------FDEMKGKTASTDLFSNEIVTKRQTTGVSDG 106 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 S G AA M S IK D V V + ++ + + V+ + Sbjct: 107 --SKKFKLGIEAANMPTS--------IKNGDAVRVFVQTTIGNKIFE---IFDKKEVVNV 153 Query: 180 D-HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + S + + + L ++ +A AQ + Sbjct: 154 NFKKSASGQESQLVESVDLLVSDKEAVTYFDAQKAGSI 191 >gi|184200331|ref|YP_001854538.1| hypothetical protein KRH_06850 [Kocuria rhizophila DC2201] gi|183580561|dbj|BAG29032.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 223 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 68/192 (35%), Gaps = 18/192 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + A+ V+ + ++ G + L FPE G + E G Sbjct: 42 LAPPGARTAPVVTAAHEVPAGTSLGAGDLAVSQFPEALAPTGAY------ASPAEAQGQT 95 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 V + G P+ ++ G + + P G AAT+ +S AV ++P D VDVV Sbjct: 96 SAVALTPGQPVTSSTVLGPG---VLTGQPTGTTAATVRVSD-PAVLRHVRPGDAVDVVH- 150 Query: 158 RSLSERKPTVTVVLSNIRVI-AIDHNIDSDERVLVGST------ATLELTPMQAKALVAA 210 + R + V+ A + +L T L A L + Sbjct: 151 HTDEARSARGRTAARAVTVLWAAGAPSGTGSSLLAAGTDDDAGLVVLAAPRETAAELASL 210 Query: 211 QSVAKLSLVLRS 222 + ++SLVL S Sbjct: 211 EGSGRVSLVLVS 222 >gi|296140955|ref|YP_003648198.1| SAF domain protein [Tsukamurella paurometabola DSM 20162] gi|296029089|gb|ADG79859.1| SAF domain protein [Tsukamurella paurometabola DSM 20162] Length = 218 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 27/155 (17%), Positives = 55/155 (35%), Gaps = 23/155 (14%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 +GV ++A ++A V +E VL + +L G + L Sbjct: 29 AAAGVLTVLALVVA-------------VTSEPSGPQTEVLTAARELGPGGRLADADLRLT 75 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 P E + + + G V P+ G+ + +++ G + G Sbjct: 76 TVPAELAPPDALT------STGQAVGRSVTGPVGAGEILTDRRVLTDRTAG---QIRPGS 126 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 R + + ++ + +++P D VDVV R + Sbjct: 127 RLVPVALQDAATMD-LLRPGDVVDVVAQRKARAGE 160 >gi|302335340|ref|YP_003800547.1| SAF domain protein [Olsenella uli DSM 7084] gi|301319180|gb|ADK67667.1| SAF domain protein [Olsenella uli DSM 7084] Length = 229 Score = 60.7 bits (146), Expect = 2e-07, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 67/186 (36%), Gaps = 17/186 (9%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +E I + + +++S+G L G VV + + + + ++ ++ Sbjct: 36 RDEAIARYGGEVVRLVVSRGPLEPGDVVDQADVSERDWVTDLAPSDALT------SLDDV 89 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G V VP+ P+ + + +P G A ++ I+ V I V Sbjct: 90 VGREVTVPVAANAPVTALAF---RDVAAMADIPAGHVALSIPITDKLGVSRSIGVGTSVI 146 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 +V T + ++ V+A + + G TL + A+++A + Sbjct: 147 GYVVDDKG-----STPIATDATVLA---SPGETSGLGTGGQLTLAIRSEDVDAVLSASAA 198 Query: 214 AKLSLV 219 L +V Sbjct: 199 GTLRIV 204 >gi|157502150|ref|YP_001485249.1| hypothetical protein pBMB67_063 [Bacillus thuringiensis] gi|228942717|ref|ZP_04105245.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975828|ref|ZP_04136358.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982331|ref|ZP_04142607.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407] gi|87133455|gb|ABD24365.1| hypothetical secreted protein [Bacillus thuringiensis] gi|228777436|gb|EEM25727.1| Hypothetical secreted protein [Bacillus thuringiensis Bt407] gi|228783854|gb|EEM31903.1| Hypothetical secreted protein [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228816928|gb|EEM63025.1| Hypothetical secreted protein [Bacillus thuringiensis serovar berliner ATCC 10792] Length = 272 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 69/179 (38%), Gaps = 20/179 (11%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ A G++ + ++ + +V V +K D+ +T ++L+ Sbjct: 13 LAITLAASIGLVVAIVGYENYAVSSKV------NLQKVYFTKVDIPPRTKITKDMLQVRE 66 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKG 128 ++ I + + ++G +++ + K+V + +++ L Sbjct: 67 VSNSSIPPNAIKNPNDIVGKYTVNG----FGLVENSYVFKNKVVSKDELPDAAILNLKPS 122 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV--------VLSNIRVIAI 179 + A + + I ++ G I P HVD+ ++ ++ V + ++RV A+ Sbjct: 123 EVAFPLLVDIETSSGNSIIPESHVDLYFKGTVKDKDEKGEVVEKPIFGRIAKHVRVTAV 181 >gi|320526981|ref|ZP_08028170.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei F0204] gi|320132566|gb|EFW25107.1| putative Flp pilus assembly protein CpaB [Solobacterium moorei F0204] Length = 237 Score = 60.3 bits (145), Expect = 2e-07, Method: Composition-based stats. Identities = 39/226 (17%), Positives = 82/226 (36%), Gaps = 26/226 (11%) Query: 1 MKLTRLMGIVVSGVFALVAG--IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 MK + GI + + L A I+A R I+K D+ Sbjct: 1 MKKVKRTGIY-ALILCLWAVGNILAFRY-----------YLAKTINLKTTYIAKHDIPPR 48 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + L + PE+ + ++ + G++ + + D + EK V Sbjct: 49 TQIQTEDLTTIQVPEKYMQAYTWNEKSDIVGKYTTVQGMIPKGSMFYKDMLYNEKEV--- 105 Query: 118 NGGLS-SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 L+ + L +G T++ + + G I+ +VD+ + S + P +++ + V Sbjct: 106 -RDLAITKLQEGMTIFTLETN--VSALGSIEEGMYVDIYVSISQKKDVPITGILIRHAEV 162 Query: 177 IAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 I+I ++ ++ V L + L A S+ ++ L Sbjct: 163 ISIKDHKGLSLKDEQSSKVPYFIELGINQSDIDYLSLASSLGEVRL 208 >gi|119715033|ref|YP_921998.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119535694|gb|ABL80311.1| SAF domain [Nocardioides sp. JS614] Length = 211 Score = 60.3 bits (145), Expect = 3e-07, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 61/164 (37%), Gaps = 19/164 (11%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G V+ P L V F ++V G DD + G + P+ G+P+ Sbjct: 53 AARDLTAGTVLAPGDLRAVGFAPDSVPAGASDDAI------DAVGRTLAAPLRAGEPVTD 106 Query: 111 EKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 ++V +G G A + + + + +++ D VD+V + Sbjct: 107 VRVVGPALTDGY------PGLTAVPVRLPDA-GMVDLLRVGDRVDLVAADPQGGG---AS 156 Query: 169 VVLSNIRVIAI-DHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VV +++ V+A+ D L G + P + A Sbjct: 157 VVATDVPVLAVPAAGPDVGATGLPGRLVVVGAEPADVARIADAS 200 >gi|306817241|ref|ZP_07450987.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307700399|ref|ZP_07637438.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris FB024-16] gi|304649921|gb|EFM47200.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|307614384|gb|EFN93614.1| putative Flp pilus assembly protein CpaB [Mobiluncus mulieris FB024-16] Length = 198 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 22/184 (11%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 L+++ + G + P L + + E+ G V + Sbjct: 33 PAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYF------VQAGEVAGKKAAVAL 86 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + L++ L+ G+ A + + AV G K V++ + Sbjct: 87 EPGTVVAPGLLLENSLADLA----PGEVAFALSVED-PAVAGFSKTGQIVEIWSSSPSVD 141 Query: 163 RKPTVTVVLSNIRVI----AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + ++ +N+RV+ A D + + + L + A+ +VAA+S LS Sbjct: 142 NQ----LLATNVRVLGMEAAKDSLLGATSSKAI---VYLGASEEAARKVVAAKSSHDLSF 194 Query: 219 VLRS 222 VLR Sbjct: 195 VLRG 198 >gi|227876349|ref|ZP_03994461.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC 35243] gi|269975913|ref|ZP_06182917.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris 28-1] gi|227842890|gb|EEJ53087.1| hypothetical protein HMPREF0577_1762 [Mobiluncus mulieris ATCC 35243] gi|269935741|gb|EEZ92271.1| putative pilus assembly transmembrane protein [Mobiluncus mulieris 28-1] Length = 198 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 65/184 (35%), Gaps = 22/184 (11%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 L+++ + G + P L + + E+ G V + Sbjct: 33 PAGTRALVARVPICAGCEINPKDLRERRLDPGALPQHYF------VQAGEVAGKKAAVAL 86 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G + L++ L+ G+ A + + AV G K V++ + Sbjct: 87 EPGTVVAPGLLLENSLADLA----PGEVAFALSVED-PAVAGFSKTGQIVEIWSSSPSVD 141 Query: 163 RKPTVTVVLSNIRVI----AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 + ++ +N+RV+ A D + + + L + A+ +VAA+S LS Sbjct: 142 NQ----LLATNVRVLGMEAAKDSLLGATSSKAI---VYLGASEEAARKVVAAKSSHDLSF 194 Query: 219 VLRS 222 VLR Sbjct: 195 VLRG 198 >gi|219850069|ref|YP_002464502.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485] gi|219544328|gb|ACL26066.1| Flp pilus assembly protein CpaB [Chloroflexus aggregans DSM 9485] Length = 351 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 49/278 (17%), Positives = 89/278 (32%), Gaps = 84/278 (30%) Query: 44 KFINVLISKGDLAVGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 +NV+ + D+ ++ P +LE V P D+ ++ +++ ++ G LV P+ Sbjct: 49 PLVNVVQAAVDIEANTLLNDPTLLEVVEVPITE-----FDEQNEFSSINDVFGKLVINPV 103 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDISISSAVGGMIKPNDHVDVVMVRS 159 G PI + + + G + G+ +A + ++ S V + ND VDV+ S Sbjct: 104 QAGRPITRDNVRNPGLAQMLPTAEPGQPRVKAYPLVVNNLSGVADQLAVNDFVDVIATFS 163 Query: 160 LSERKP-----------------------------TVTVVLSNIRVI------------- 177 + + T ++ +V+ Sbjct: 164 VERQIIRPGPRQVITVNDVDQVIREYEFGETQTFLTTKTIIQRAKVLQILRPAIPTPATP 223 Query: 178 -----------------------AIDH--NIDSDERVLVGSTAT-------LELTPMQAK 205 A E GST T L L Q + Sbjct: 224 EGEAAPAQGEALPTQSSSLPQVDASGQPITSSQLENATPGSTLTQSIWVVMLALNDQQIE 283 Query: 206 ALVAA-QSVAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 L A QS A++ L LRS D+ + + + E Sbjct: 284 LLEFALQSNARIVLALRSSDDVAIEQTSGITIDLLVRE 321 >gi|84498177|ref|ZP_00996974.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649] gi|84381677|gb|EAP97560.1| hypothetical protein JNB_18858 [Janibacter sp. HTCC2649] Length = 263 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 31/234 (13%), Positives = 65/234 (27%), Gaps = 44/234 (18%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN----ILEWVA 70 AL ++ + + E V +S+ + G + ++ Sbjct: 2 LALAGAVLVLLYAQGADKRALEGQQPQ-----TVYVSEKVVPAGTTLKDAERSGLITRTQ 56 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 + G + + N+ + R + G + G + + G Sbjct: 57 VASKAKPAGALAGITSDNSS-----FVARADLPPGQVVLSAAFGSERLGQKAIGVKSGMV 111 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-------------PTVTVVLSNIRVI 177 A ++ + + VG + + + L + +V+L+ + VI Sbjct: 112 AVSVSLEDPNRVGAFVTAGSTITIYDTYELKKLGTDEATAQYNDLSVKGTSVLLTKVSVI 171 Query: 178 -----------AIDHNIDSDERVLVGST------ATLELTPMQAKALVAAQSVA 214 A + ST T+ELTP + LV A Sbjct: 172 GIGTTSLSAPVATEQAEKDKGAAPTTSTPVQSYLVTVELTPADSVKLVHAIQHG 225 >gi|283787692|ref|YP_003367557.1| tight adherence protein RcpC [Citrobacter rodentium ICC168] gi|282951146|emb|CBG90837.1| putative tight adherence protein RcpC [Citrobacter rodentium ICC168] Length = 290 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 31/204 (15%) Query: 1 MKLTRLM-GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAK--------FINVLIS 51 M+ L+ I + +F +AG+ L+ E V + PA I+V ++ Sbjct: 1 MRKKSLVVYIYIVMIFVGLAGLF---LIMNSPQSAESVTDKAPAPAIKKEEQEKISVAVA 57 Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + DL V+T + G + + + + VP+ KG I Sbjct: 58 ERDLPAKAVLTAEDFRIKMV---EITRGGHEKASFALGNKSIKDYALNVPVAKGTFIPGS 114 Query: 112 KLVDRG-NGGLSSLLPKGKRAATMDISIS-SAVGGMIKPNDHVDVVMVRSLSERK----- 164 LV G +S L G T +S + + + I+ +D+ MV + Sbjct: 115 ALVKPGTTEYISLFLRPGHVLYTFRLSEADNYLFDNIRAGQFIDIFMVYGKKKENGKEML 174 Query: 165 --PTVTV-------VLSNIRVIAI 179 P+ T+ ++ N RV+A+ Sbjct: 175 VSPSTTIESTRLKPLMKNRRVLAL 198 >gi|90409527|ref|ZP_01217563.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3] gi|90309368|gb|EAS37617.1| hypothetical protein PCNPT3_13790 [Psychromonas sp. CNPT3] Length = 84 Score = 59.9 bits (144), Expect = 3e-07, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 33/55 (60%) Query: 193 STATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQ 247 S TLE+ P QA ++ A + LS++LR+ +D + ++ D+ D+ E K++Q Sbjct: 6 SAVTLEVLPAQANTVILANQLGTLSMLLRNSSDNSILANTQVDIGDIFPEIKQVQ 60 >gi|328884723|emb|CCA57962.1| hypothetical protein SVEN_4676 [Streptomyces venezuelae ATCC 10712] Length = 235 Score = 59.9 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 72/182 (39%), Gaps = 21/182 (11%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 KGD+A + N E + P+ + + + D ++ ++G + + G ++ + Sbjct: 47 KGDVAPYTPLRANQFEKITMPKRWLSETAVTD------LRVIEGRIAVTRLKAGSLLQSD 100 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV--RSLSERKPTVTV 169 +V+R L G++ + I ++ V G I V++ ++ + Sbjct: 101 MIVERPE------LQPGQQEIAIMIDAATGVAGKITAGATVNIYATFAGEKKDQPAQSRM 154 Query: 170 VLSNIRVIAIDH------NIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVLRS 222 +++ RV+ + + R + L+ + A+ + A+S A+ + L L + Sbjct: 155 IVAGARVLDVGKLTPIRESSQGSARTNDAVPISFALSTLDAQRVAYAESFAEHVRLALVA 214 Query: 223 IA 224 Sbjct: 215 PT 216 >gi|226310155|ref|YP_002770049.1| hypothetical protein BBR47_05680 [Brevibacillus brevis NBRC 100599] gi|226093103|dbj|BAH41545.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 279 Score = 59.9 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 71/175 (40%), Gaps = 20/175 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K ++ +V+S + A +AG + +Q + + + + + + D+ ++ Sbjct: 5 KRRAIIFLVLSFLLAALAGFL--------FLQKIKDMNAQLGEMVEIYEANADIPSRALI 56 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 P+ L P++ D ++ D L + VP+ KGD I ++ N Sbjct: 57 QPDQLTVREIPKKYADDSYVIDKAS------LKNQVTIVPLSKGDIITKN-IMKPAN--- 106 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 + + R T+ S + ++ D VD+++ +S KP V + ++ V Sbjct: 107 -VVRDENNRLVTVFSSNNIVFDQELEALDRVDIIISHEVSG-KPVTEVFMKDVPV 159 >gi|227501477|ref|ZP_03931526.1| SAF domain protein [Corynebacterium accolens ATCC 49725] gi|227077502|gb|EEI15465.1| SAF domain protein [Corynebacterium accolens ATCC 49725] Length = 241 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 32/234 (13%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++ + + + VL+ DL G ++ + P ++ Sbjct: 24 GVLVRRAIALVLLIAALASAVSRAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPS 83 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 + D A +L G ++ KG+ + ++L+ G +SSL+ A Sbjct: 84 SALAD-----APSDLAGRIITAAAGKGEVVTSQRLL--GQELVSSLVANSGSA-----DS 131 Query: 139 SSAVGGMIKP--------------NDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNI 183 G + P D VD+V ++ +P T V+ S RV+ + Sbjct: 132 KEGGSGRMIPVKLADPDIIPHLHHGDTVDIVTANDATDSEPATARVIASGARVV----ST 187 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 + E + +T L L A + AA L++V+ P + D+D Sbjct: 188 TTAEGEVSSATVLLALPNEHANDVAAASLNQPLTVVIVGDR-AQPQTPVDADPA 240 >gi|312621778|ref|YP_004023391.1| SAF domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202245|gb|ADQ45572.1| SAF domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 209 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 47/139 (33%), Gaps = 20/139 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+L ++ V V A L++ N ++ ++++K D+ G Sbjct: 1 MRLKKIGLFFVFLVLATGLAFGEYYLLTN---------IANKPQYQLIIVAKQDIPAGAQ 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + L + +H ++ G I G+PI E L + Sbjct: 52 ITLDKLSVARVDIQ-------TPIHAAKTRNQILGKYALYDIKAGEPIIPEHLTNLSVNT 104 Query: 121 LSSLLPKGKRAATMDISIS 139 L+ G + T+ I Sbjct: 105 LA----NGMKLTTVRIDPV 119 >gi|226307879|ref|YP_002767839.1| hypothetical protein RER_43920 [Rhodococcus erythropolis PR4] gi|226186996|dbj|BAH35100.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 248 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 54/129 (41%), Gaps = 8/129 (6%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + V++S DL G V+ + +E + + +G + D + G V Sbjct: 63 DPATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVA 116 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 PI G+ + +++ GLS + R + ++ + AV M++ D VDV+ V Sbjct: 117 GPIRSGETVTDVRVLSPRLAGLS-VGTDDARIVPVRLADA-AVADMLRSGDVVDVLTVGP 174 Query: 160 LSERKPTVT 168 + R T Sbjct: 175 DTSRTDTSR 183 >gi|255316487|ref|ZP_05358070.1| hypothetical protein CdifQCD-7_19162 [Clostridium difficile QCD-76w55] Length = 259 Score = 59.5 bits (143), Expect = 4e-07, Method: Composition-based stats. Identities = 27/195 (13%), Positives = 68/195 (34%), Gaps = 32/195 (16%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 T++ K + V ++ V+ P++ + I + ++++G ++ Sbjct: 28 TQSQVKPVAVYQYSRNIPENTVIQKGDYIKTFKPKDILTKSMITNE------KDINGKIL 81 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + + L D + + R ++ + + AVGG +K D VD+ V Sbjct: 82 TTNVYRSEYAIKNNLEDPAKLDEFAKIDLSNLRKVSIPVEMKDAVGGNLKKGDRVDLTFV 141 Query: 158 RSLSERKPTV-------TVVLSNIRVIA---------IDHNID----SDERVLVGST--- 194 + + + ++ V +D ++E+ V + Sbjct: 142 KQGDSKNNDTSDSFTYAKTFMQDVLVYNVVDDGGKKYVDQTEGTQSLANEKGEVVESGSL 201 Query: 195 --ATLELTPMQAKAL 207 T+ +T QA+ + Sbjct: 202 SIVTVAVTAQQAEEI 216 >gi|111022595|ref|YP_705567.1| hypothetical protein RHA1_ro05629 [Rhodococcus jostii RHA1] gi|110822125|gb|ABG97409.1| conserved hypothetical protein [Rhodococcus jostii RHA1] Length = 237 Score = 59.1 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 67/169 (39%), Gaps = 16/169 (9%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V+++ DL G+V+T +E V + DG + A+ ++DG + P G+ Sbjct: 70 VVVAARDLQPGVVLTDADVELVDLEAGTLPDGAVT------ALADVDGRTLAGPTRAGEA 123 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 + +++ ++ + R + ++ AV +++ D VDV+ V + P Sbjct: 124 LTDVRVLGPRLAAAAAGM-DDARIVPVRLAD-PAVTELLREGDRVDVLTVDPDTPANPDR 181 Query: 168 T---VVL--SNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VL + V+ D+R L L +A + AA Sbjct: 182 RSGATVLASRAVVVLVTPSENGRDQRE---RVVMLALPASEATTVAAAS 227 >gi|219883046|ref|YP_002478210.1| hypothetical protein Achl_4442 [Arthrobacter chlorophenolicus A6] gi|219862052|gb|ACL42393.1| conserved hypothetical protein [Arthrobacter chlorophenolicus A6] Length = 246 Score = 59.1 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 72/208 (34%), Gaps = 24/208 (11%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVT--PNILEWVAFPEENVFDGFIDDVHQP 87 +VQ + A +N+ + + ++ + P V G + D Sbjct: 24 SYVQGADQRALKGAATMNIYVVDKSVPANTPAADLAKFVKPASVPASTVAAGAVTD---- 79 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL--SSLLPKGKRAATMDISISSAVGGM 145 + L G + P+L G+ + ++VD + + ++ +P+G + T+ + VGG Sbjct: 80 --LGTLTGKVTSAPLLPGEQLLDGRMVDPASLLVPGTAPVPEGMQEITVQLGPDRVVGGQ 137 Query: 146 IKPNDHVDVVM--VRSLSERKPTVTVVLSNIRVIAI-DHNIDSDERVLVGST-------- 194 + D V V + + PT + + V ++ + + + Sbjct: 138 LAAGDTVGVFVSFTEGAGPKGPTTHLAFQKVLVTSVQGAPAEPTGKAAATAPPGPPVPAG 197 Query: 195 ---ATLELTPMQAKALVAAQSVAKLSLV 219 TL A+ +V A + L Sbjct: 198 AMLITLARPAADAERIVFAAEFGTIWLS 225 >gi|308178037|ref|YP_003917443.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117] gi|307745500|emb|CBT76472.1| hypothetical protein AARI_22500 [Arthrobacter arilaitensis Re117] Length = 236 Score = 58.8 bits (141), Expect = 7e-07, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 68/184 (36%), Gaps = 18/184 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ D+ G +T N L + D +++ + G V + G Sbjct: 63 EVVVVISDIPAGSQITSNQLAVQTVRLDP------QDDEVFESLEPVSGQRAAVALPAGT 116 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKP 165 +R LV L + P+G A + +S + V ++ P VD+V+ E++ Sbjct: 117 VLRSYSLVGPQ---LLAGSPQGTVAVPLRLSDPATVT-LLHPGQLVDIVLTTGDGFEKQI 172 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGST-------ATLELTPMQAKALVAAQSVAKLSL 218 + + V+ + N + E ++ T + + L A S K+S Sbjct: 173 NSETIAKAVPVLWVPDNASTSEFGMLSGTRQSGEGIVVVAAASSLSDDLAGAVSRGKVSA 232 Query: 219 VLRS 222 VL + Sbjct: 233 VLVN 236 >gi|320532996|ref|ZP_08033744.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 171 str. F0337] gi|320134787|gb|EFW26987.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 171 str. F0337] Length = 319 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 18/135 (13%), Positives = 49/135 (36%), Gaps = 13/135 (9%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ + + V+ P + VL++ ++ G ++T + P ++ Sbjct: 58 LVVAVCLGTAVLVALSVLRPGPERGQQVLVASRAISAGALLTDQDVSTSTLPAGSLPQSP 117 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 + + + G + + KG + +GG++ L +R + + + Sbjct: 118 LT------STGQAVGSRAAISLEKGTVLTAS----MTSGGMAQELGADERLVQVPVDV-- 165 Query: 141 AVGGMIKPNDHVDVV 155 + +P VDV+ Sbjct: 166 -GAELARPGARVDVI 179 >gi|306835635|ref|ZP_07468644.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] gi|304568479|gb|EFM44035.1| conserved hypothetical protein [Corynebacterium accolens ATCC 49726] Length = 241 Score = 58.4 bits (140), Expect = 9e-07, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 32/210 (15%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + VL+ DL G ++ + P ++ + D A +L G ++ Sbjct: 46 RAKELPQVLVFSHDLPAGAELSAADVSLERLPSSSIPSSALAD-----APSDLAGRIITA 100 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKP------------ 148 KG+ + ++L+ G +SSL+ + A G + P Sbjct: 101 AAGKGEVVTSQRLL--GQELVSSLVTESGSA-----DSKEGGSGRMIPVKLADPDIIPHL 153 Query: 149 --NDHVDVVMVRSLSERKP-TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAK 205 D VD+V ++ +P T V+ S RV+ + + E + +T L L A Sbjct: 154 HHGDTVDIVTASDATDSEPATARVIASGARVV----STTTAEGEVSSATVLLALPNEHAN 209 Query: 206 ALVAAQSVAKLSLVLRSIADLNPSSSEDSD 235 + AA L++V+ P + D+D Sbjct: 210 DVAAASLNQPLTVVIVGDR-AQPQAPVDAD 238 >gi|218708106|ref|YP_002415727.1| hypothetical protein VS_0018 [Vibrio splendidus LGP32] gi|218321125|emb|CAV17075.1| Conserved hypothetical protein; putative exported protein, CpaB [Vibrio splendidus LGP32] Length = 262 Score = 58.4 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 80/232 (34%), Gaps = 23/232 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++G+ + + G++ + + VQ EE I E V G Sbjct: 1 MNSKIILGLAFLAISIGLYGVVNVPM-DTFPVQPEEPIIEV---TFKVWKLTHPAVKGQQ 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + PE + + Q + D I + + L L G+ Sbjct: 57 LKRSDFVIEYLPEARA---ALLGIDQNIELDWNDPQFAVHDIAAYELVDLNMLTSPGDSQ 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174 L +++ G + + +GG I D VD+ ++ + + + V L+ + Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173 Query: 175 RVIAIDHNIDSDERVLVGSTATLE----------LTPMQAKALVAAQSVAKL 216 ++A +D ST TLE +T Q L AQ +A++ Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLEKETQVTLILQVTNQQLAQLTVAQRIAEV 225 >gi|308234323|ref|ZP_07665060.1| Flp pilus assembly protein CpaB [Atopobium vaginae DSM 15829] Length = 272 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + S ++ I + ++++ L +G + + + + Sbjct: 25 AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 84 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + ++ G V+V + + P+ + + ++P G+ A ++ ++ + Sbjct: 85 NS------DDVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 135 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 G I P V T ++ ++ + + + + L + P Sbjct: 136 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCV-KEAQPAQN-IPAQLV-LAVYPT 187 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 +++A + L LV+ DV D++++ ++++ I +K Sbjct: 188 DVTRVLSAAATQSLRLVI-----------PAVDVQDLKDDSQQVESEHTKEISSKS 232 >gi|229819398|ref|YP_002880924.1| SAF domain protein [Beutenbergia cavernae DSM 12333] gi|229565311|gb|ACQ79162.1| SAF domain protein [Beutenbergia cavernae DSM 12333] Length = 207 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 66/188 (35%), Gaps = 13/188 (6%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + ++VL++ D+A + P + VA P + V + +A ++ G Sbjct: 28 LRPPDPPSVDVLVAAHDIAAAQEIVPADVRVVALPADAVPPDAL------DAADDVVGRQ 81 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 + + G P+ ++ G L+ P+G + + +++P VD+V Sbjct: 82 LAHALPAGYPLGPGMVLGPG---LADGAPRGTTVVPVRFADPLLTS-VLEPGATVDLVAA 137 Query: 158 RSLSERKPTVTV---VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 + VL+ + A + + P A +V A + Sbjct: 138 GDQEAGAHVLATDAVVLARVDGEAGGGIGGLTSSAPDAPLLLVAVRPDVATLVVEASARG 197 Query: 215 KLSLVLRS 222 L++VL Sbjct: 198 TLTVVLVP 205 >gi|54026930|ref|YP_121172.1| hypothetical protein nfa49560 [Nocardia farcinica IFM 10152] gi|54018438|dbj|BAD59808.1| hypothetical protein [Nocardia farcinica IFM 10152] Length = 221 Score = 58.0 bits (139), Expect = 1e-06, Method: Composition-based stats. Identities = 23/151 (15%), Positives = 55/151 (36%), Gaps = 9/151 (5%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 A I V+++ +L G V+ L ++ G + D L G + + Sbjct: 53 AARIPVVVAARELPPGTVLAAADLTVAPHEAGSLPAGAVRDPAV------LTGATLTAAM 106 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G+ ++V +++ R + ++ +AV +++ D VDV+ + + Sbjct: 107 HPGEVFTDLRVVGPRLAEVAAS-TPDARIVPIRLAD-TAVAEILRAGDRVDVIGGETDDD 164 Query: 163 RKPT-VTVVLSNIRVIAIDHNIDSDERVLVG 192 V + ++ V+ + + V Sbjct: 165 SGTRPVRTLAADAAVVLVSEPTERGRAERVV 195 >gi|320533999|ref|ZP_08034557.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337] gi|320133787|gb|EFW26177.1| SAF domain protein [Actinomyces sp. oral taxon 171 str. F0337] Length = 235 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 71/177 (40%), Gaps = 19/177 (10%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + +L +K + G V+ L + + + + + + + ++ G RV I Sbjct: 68 QRAQMLAAKDTIKAGQVIDKEDLVSASVSSD------LTTLVRADQIDQVVGRTARVEIS 121 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 KG + +L G + + + G ++P D VDVV + S + Sbjct: 122 KGQLLDTSQLATDPVPG------GDLQVVGVSANAGRFPAGGLQPGDKVDVVDIGSQN-- 173 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V++S+ +V+A + + + G+ ++ + A L +A + ++++L Sbjct: 174 -----VIVSDAQVLAAKPSSGTSDDWTSGAVISVLVDKKGAAKLASASANGTIAVIL 225 >gi|298345610|ref|YP_003718297.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC 43063] gi|304390701|ref|ZP_07372654.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315657893|ref|ZP_07910773.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|298235671|gb|ADI66803.1| hypothetical protein HMPREF0573_10484 [Mobiluncus curtisii ATCC 43063] gi|304326457|gb|EFL93702.1| SAF domain protein [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|315491690|gb|EFU81301.1| SAF domain protein [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 198 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 82/214 (38%), Gaps = 32/214 (14%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ A++A +A+ L P V++ K ++ G +T + A Sbjct: 13 LAAGLAILAVFVAVTLFLPEKAAAT------------VVVVKHEVCAGCEITAQDVRLSA 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 V + + G V + G ++ LV+ L + G+ Sbjct: 61 LAPSAVPQDHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDLRT----GEV 110 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190 A +++S AV G K V++ + + ++ SN RV + S+ + Sbjct: 111 AFAIEVSD-PAVAGFSKTGQSVEIWCSGGNVDGQ----LLASNARV--VGVKAVSENFLG 163 Query: 191 VGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221 G++A+ L +A+ ++AA++ LS V+R Sbjct: 164 TGNSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197 >gi|302521637|ref|ZP_07273979.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302430532|gb|EFL02348.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 166 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 62/163 (38%), Gaps = 16/163 (9%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 + L G + + KG ++ + +V+R L G++ + I ++ V G I P Sbjct: 9 LGALRGKIAVTTLHKGSLLQDDMIVNRPA------LRAGEQEIAIMIDAATGVAGKITPG 62 Query: 150 DHVDVVMV--RSLSERKPTVTVVLSNIRVIAIDHNI-------DSDERVLVGSTATLELT 200 V++ +K +++ +V+ + D+ R T L Sbjct: 63 SSVNIYATFKGQNENQKDESRLIVERAQVLDVGKLTPFDQNNDDNRNRSTEAVPITFGLG 122 Query: 201 PMQAKALVAAQSVAK-LSLVLRSIADLNPSSSEDSDVWDVQEE 242 A+ + A+S A + L L + P+++ + + ++ Sbjct: 123 TTDAQRVAYAESFATHVRLALVGAGEQPPAAAGPDRTYTLDKD 165 >gi|251795111|ref|YP_003009842.1| SAF domain protein [Paenibacillus sp. JDR-2] gi|247542737|gb|ACS99755.1| SAF domain protein [Paenibacillus sp. JDR-2] Length = 237 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 61/173 (35%), Gaps = 21/173 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M R GI + + AL++G++ L +Q + + V+++K + G Sbjct: 1 MNRRRNAGIGL--LAALLSGVLVYGLFQLQKLQVTR------GETVEVIVAKQFVEAGRR 52 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T + + P E + D Q M+ + P+ +PI K+ Sbjct: 53 LTEADIAYKRIPREGYEHEMLVDAKQAVGMETVI------PLGTNEPILGWKIDKY---- 102 Query: 121 LSSLLPKGK-RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS 172 LLP G + ++ I+ D V V + + +++ Sbjct: 103 --HLLPTGLESTFQIPRDYVRSISNGIRAGDKVTVYLSGENEPSRRIFDSLVT 153 >gi|256374774|ref|YP_003098434.1| SAF domain protein [Actinosynnema mirum DSM 43827] gi|255919077|gb|ACU34588.1| SAF domain protein [Actinosynnema mirum DSM 43827] Length = 191 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 38/122 (31%), Gaps = 18/122 (14%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 VL++ DL G+ + + V P +G + A + G + Sbjct: 25 PATTTVLVAARDLPPGVALAREDVRAVELPPGVAPEGVV-------AAEVAVGRALVSTA 77 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSE 162 G+P+ +L S + + G+++ VDVV V L Sbjct: 78 RAGEPLTDARLTGVDPEAAS---------VAVRFDPVT--AGLLRTGSRVDVVGVGRLGS 126 Query: 163 RK 164 Sbjct: 127 TG 128 >gi|328943875|ref|ZP_08241340.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829] gi|327491844|gb|EGF23618.1| hypothetical protein HMPREF0091_10565 [Atopobium vaginae DSM 15829] Length = 255 Score = 57.6 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 28/236 (11%), Positives = 81/236 (34%), Gaps = 28/236 (11%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 A + S ++ I + ++++ L +G + + + + Sbjct: 8 AQSVRSDAQKARDDAIASYGGDVVRLVVTAHPLQIGDTIKAEDIVVRDWVSDLAPKDAYL 67 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV 142 + ++ G V+V + + P+ + + ++P G+ A ++ ++ + Sbjct: 68 NS------DDVIGKEVKVAVGENVPLSTMHFTESDDE---LVIPNGRVALSLPMNERLGI 118 Query: 143 GGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPM 202 G I P V T ++ ++ + + + + L + P Sbjct: 119 GLHITPRTQV-----LGYDTTNKTTHLITKDMIALCV-KEAQPAQN-IPAQLV-LAVYPT 170 Query: 203 QAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNKD 258 +++A + L LV+ DV D++++ ++++ I +K Sbjct: 171 DVTRVLSAAATQSLRLVI-----------PAVDVQDLKDDSQQVESEHTKEISSKS 215 >gi|223982946|ref|ZP_03633158.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM 12042] gi|223965107|gb|EEF69407.1| hypothetical protein HOLDEFILI_00437 [Holdemania filiformis DSM 12042] Length = 266 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 79/217 (36%), Gaps = 20/217 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E + + + ++ L G V+ ++ + P V +G D L G Sbjct: 35 ETTVQAAIDPVLIPVAARYLKSGTVIQREDIQMIEVPRPVVLEGVEKDPEL------LLG 88 Query: 96 VLVRV--PILKGDPIRLEKLVDRGN-GGLSSL-LPKGKRAATMDISISSAVGGMIKPNDH 151 V I +G L+ + +S+ L + + A T+D I ++ I P Sbjct: 89 QAVDTYNAIAEGSLFYEALLIPKEELHDVSAFPLLENEAAVTIDADIKTSYANSILPGHQ 148 Query: 152 VDVVMVRSLSERKPTVTVVL-----SNIRVIAIDHNIDSD---ERVLVGSTATLELTPMQ 203 +D+ ++ + VL S RVIA+ + + + S + L Sbjct: 149 IDLYFQGYATQADESEKRVLYGQLVSQARVIAVRDSTGKNIDAQSDKATSVIVVALAYED 208 Query: 204 AKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 A + A+ + L + + LNP S+ D +D+ Sbjct: 209 ADLVQRAKFFGTV-LPMVTYGSLNPE-SQAEDFYDIA 243 >gi|86147183|ref|ZP_01065499.1| hypothetical protein MED222_18941 [Vibrio sp. MED222] gi|85835067|gb|EAQ53209.1| hypothetical protein MED222_18941 [Vibrio sp. MED222] Length = 262 Score = 57.2 bits (137), Expect = 2e-06, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 78/232 (33%), Gaps = 23/232 (9%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++G+ + + G++ + + +Q EE I E V G Sbjct: 1 MNSKIILGLAFLAISIGLYGVVNVPM-DTFPIQPEEPIIEV---TFKVWKLTHPTVKGQQ 56 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG- 119 + + PE + + + + I + + L G+ Sbjct: 57 LKRSDFVIEYLPEARA---ALLGIDRNIELDWNAPQFAVHDIAAYELVDSNMLTSPGDSQ 113 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV-----LSNI 174 L +++ G + + +GG I D VD+ ++ + + + V L+ + Sbjct: 114 YLQAVIRPGFVPYNVTVPGRDVLGGTIAVGDLVDISVLSTPDQNLSSEDTVSDIQHLTMV 173 Query: 175 RVIAIDHNIDSDERVLVGSTATLE----------LTPMQAKALVAAQSVAKL 216 ++A +D ST TLE +T Q L AQ +A++ Sbjct: 174 PLLAQIPVLDMVTSEKAVSTLTLEKETQVTLILQVTNQQLAQLTVAQRIAEV 225 >gi|326333348|ref|ZP_08199595.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium Broad-1] gi|325948992|gb|EGD41085.1| putative Flp pilus assembly protein CpaB [Nocardioidaceae bacterium Broad-1] Length = 219 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 25/179 (13%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A L + +P + ++ DL VG V+T L + +V Sbjct: 22 LLAFLLTASAVAIGFSATRPDPPDTSTMAVASRDLPVGTVLTAADLTDIETDPGSVPA-- 79 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK---RAATMDIS 137 + + G + P+ +G+P+ +LV L +G A + + Sbjct: 80 -------DLAEAPLGERLAAPLRQGEPVTDVRLVGPE-------LTEGHPDLVAVPVRLP 125 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNID--SDERVLVGST 194 + + G++ D VD+ + VT + ++++ + D+ G T Sbjct: 126 DAE-MAGLLHVGDTVDLYATDPATAETARVTT---DTLILSLPQATEPNRDDSSAQGKT 180 >gi|225017400|ref|ZP_03706592.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum DSM 5476] gi|224949810|gb|EEG31019.1| hypothetical protein CLOSTMETH_01326 [Clostridium methylpentosum DSM 5476] Length = 290 Score = 56.8 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 42/270 (15%), Positives = 86/270 (31%), Gaps = 52/270 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + ++G V + LV I + QTE V + + G + Sbjct: 7 RNRTIIGAVCILLAVLVCFGITPLFNAGLKAQTEA-----------VRVKAEVIPRGTYI 55 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG----------DPIRLE 111 T +++E + D ++ E+ G V + K +P+ Sbjct: 56 TADMVEVYTRGASGMPDSIAT------SLDEVVGRYTDVELRKNTDVNTGWLSSEPLTQY 109 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 + + + +G K A ++ I + + G ++ D + ++ + T Sbjct: 110 EYLTKLDGS--------KVAISVTIPTFAKGGSGKVEAGDII-MLFATDKDTGETTQPPE 160 Query: 171 LSNIRVIAIDHNIDSDER-------------VLVGSTATLELTPMQAKALVAAQSVAKLS 217 L + V+A + +D+ + ST TL + QA+ L + L Sbjct: 161 LKYVEVLAATQSSGADKEYQAPQEDEEENPEESLPSTITLLVNTEQAQILAHLEESNSLH 220 Query: 218 LVL--RSIADLNPSSSEDSDVWDVQEEGKE 245 L R + D + V+ E Sbjct: 221 LAFVYRGTRENAEKFLAAQDQFFVEPEEAT 250 >gi|283782738|ref|YP_003373492.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05] gi|283441123|gb|ADB13589.1| hypothetical protein HMPREF0424_0231 [Gardnerella vaginalis 409-05] Length = 284 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 65/249 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS E + + ++K ++ G V+ Sbjct: 47 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQKGSRVSV 97 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 98 NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------------SERKPTVT 168 +P+G + T+ + ++ + P + +D+ + + +E+ + T Sbjct: 147 RIPEGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203 Query: 169 V-------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 + V+ N+ V+ I + + +T TL + Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261 Query: 204 AKALVAAQS 212 A L+ AQS Sbjct: 262 ALRLLQAQS 270 >gi|229827062|ref|ZP_04453131.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC 49176] gi|229788680|gb|EEP24794.1| hypothetical protein GCWU000182_02446 [Abiotrophia defectiva ATCC 49176] Length = 278 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 76/201 (37%), Gaps = 30/201 (14%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K V+ K + G ++T + LE V + + ++ + G + Sbjct: 35 KQEEVVRVKEKITEGELITADKLETVNVGAYGLSPDVVK------SIDGITGKYAKTDFY 88 Query: 104 KGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSL 160 KG I E L D + L +P+ K A ++ I S ++ + + D V ++ + Sbjct: 89 KGSYITGEGLSDVALEEDTYLNDIPEDKYAISITIQSFAAGLSSKLLKGDIVTII-TKKG 147 Query: 161 SERKPTVTVV--LSNIRVIAIDHNIDSDERVLVGS---------------TATLELTPMQ 203 + + L+ + V++ D +++ G T TL + +Q Sbjct: 148 EGDEAVTEIPRELTYVEVLST-TEEDGEDKENNGKEVKKEDDTKAKKKLATITLLVNSLQ 206 Query: 204 AKALVAAQSVAKLSLVL--RS 222 A+ L + ++ + + L R+ Sbjct: 207 AEELASFENQRGIHVALKCRN 227 >gi|298253092|ref|ZP_06976884.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1] gi|297532487|gb|EFH71373.1| hypothetical protein GV51_0271 [Gardnerella vaginalis 5-1] Length = 284 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 44/249 (17%), Positives = 89/249 (35%), Gaps = 65/249 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS E + + ++K ++ G V+ Sbjct: 47 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQQGSRVSV 97 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 98 NDIAYVRVPKHKVFNQALSNNISANAS-----IIATCEIRKGMPILQTLLSKIP------ 146 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL---------------SERKPTVT 168 +P+G + T+ + ++ + P + +D+ + + +E+ + T Sbjct: 147 RIPEGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSKNAESHNNEKSKSST 203 Query: 169 V-------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 + V+ N+ V+ I + + +T TL + Sbjct: 204 IENNDKNKNQDIEENNIAEIDERYVSVVHNVTVMQITQSTQVSQNQQ--NTTTLAMPAAD 261 Query: 204 AKALVAAQS 212 A L+ AQS Sbjct: 262 ALRLLQAQS 270 >gi|315654208|ref|ZP_07907116.1| SAF domain protein [Mobiluncus curtisii ATCC 51333] gi|315491243|gb|EFU80860.1| SAF domain protein [Mobiluncus curtisii ATCC 51333] Length = 198 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 40/214 (18%), Positives = 81/214 (37%), Gaps = 32/214 (14%) Query: 11 VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVA 70 ++ A++A + + L P V++ K ++ G +T ++ A Sbjct: 13 LAAGLAILAVFVVVTLFLPEKAAAT------------VVVVKHEVCAGCEITAQNVKLSA 60 Query: 71 FPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 V + + G V + G ++ LV+ L + G+ Sbjct: 61 LAPSAVPQNHFQKADR------VIGKTAAVSLTSGTVLQPALLVENAVEDLRT----GEV 110 Query: 131 AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVL 190 A +++S AV G K V++ S ++ SN RV + S+ + Sbjct: 111 AFAIEVSD-PAVAGFSKTGQSVEIW----CSGGNVDGELLASNARV--VGVKAVSENFLG 163 Query: 191 VGSTAT---LELTPMQAKALVAAQSVAKLSLVLR 221 G++A+ L +A+ ++AA++ LS V+R Sbjct: 164 TGNSASIAYLAAPEDEARRVIAAKTDHDLSFVVR 197 >gi|253576048|ref|ZP_04853381.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786 str. D14] gi|251844623|gb|EES72638.1| flp pilus assembly protein CpaB [Paenibacillus sp. oral taxon 786 str. D14] Length = 265 Score = 56.1 bits (134), Expect = 5e-06, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 24/168 (14%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 RL+ + V+ + A VA +I + I V ++ +L + Sbjct: 14 RRLLIVFVALILAGVAVVI------------QSSIVNKQVTTELVYVAADNLTPYS-LVE 60 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDG---VLVRVPILKGDPIRLEKLVDRGNG- 119 L + V D I D ++EL+G V V I KG P+ L+ Sbjct: 61 GKLVQRNVVKSEVPDDAIRD------LKELEGESWVTTEVGIPKGIPVSKSMLIPAKESK 114 Query: 120 -GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 G S L G + + G MIKP VD + +R+P+ Sbjct: 115 FGESLELKDGAMFVGVKTDQVKSAGDMIKPGTIVDAYVYIKGQDRQPS 162 >gi|256826164|ref|YP_003150124.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256689557|gb|ACV07359.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 218 Score = 56.1 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 40/192 (20%), Positives = 71/192 (36%), Gaps = 28/192 (14%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 P VL++ ++A G +T L + PE +++EL G V Sbjct: 49 PAPPVTTEVLVADAEIAPGTTLTAEHLRTIELPEGAA-------AWDAGSVEELTGRTVT 101 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 +P+ GDP+ ++ G +P G+ + + + P V +V Sbjct: 102 IPLAPGDPVTPRSVLPAGE-----QIPGGRELIFLPVLDPPVLAA-AHPGSTVRLV---- 151 Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-----QSVA 214 + T + V + ID D +G LELTP Q+ A+ +A Sbjct: 152 ---DRTTGETLADRATVRSTAP-IDPDAVDSLGG-LWLELTPAQSDAVASAGVQTGSQEG 206 Query: 215 KLSLVL-RSIAD 225 +++ L RS + Sbjct: 207 AVAVSLVRSPQE 218 >gi|332671590|ref|YP_004454598.1| SAF domain-containing protein [Cellulomonas fimi ATCC 484] gi|332340628|gb|AEE47211.1| SAF domain protein [Cellulomonas fimi ATCC 484] Length = 205 Score = 55.7 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 58/165 (35%), Gaps = 23/165 (13%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V AL GI A ++ + P + V+++ L G +T + + V P Sbjct: 9 VVTALGLGIAAAGVLG--------TLRPAPPETRPVVVAGLPLVAGTRLTADDVRVVDVP 60 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 DG V E+ + V + G P+ L G G P G Sbjct: 61 TRLAADGAAARV------DEVLDRSLAVDLTPGSPLVPGVLAADGATG-----PPGTVVT 109 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 T+ ++ + M++P VDV+ TVV + V+ Sbjct: 110 TVRLAD-TGAAAMLEPGRRVDVLAATPEGGP---ATVVAARALVL 150 >gi|167036494|ref|YP_001664072.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320114922|ref|YP_004185081.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855328|gb|ABY93736.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928013|gb|ADV78698.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 180 Score = 55.7 bits (133), Expect = 6e-06, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 69/177 (38%), Gaps = 32/177 (18%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R++ I + + A + A + V +N K V++ + D+ G V++ Sbjct: 1 MSRIIKIAL-----ITAVVFAAFMF---------VFMQNIQKTEKVVVVEKDIPAGTVIS 46 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ P V + ++ ++ G +V+ ++GD I +E L + Sbjct: 47 QDAVKVTDVPASVVRPNY------AKSLADVIGKVVKEGRVQGDFIPVEILTSQDEK--- 97 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 LL G T+ I ++ D V ++ + VL +VI++ Sbjct: 98 -LLEAGHVIMTIQIDKVE--AKTLQSGDTVSFIVFDQTGSK------VLEGFKVISV 145 >gi|269796338|ref|YP_003315793.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542] gi|269098523|gb|ACZ22959.1| SAF domain-containing protein [Sanguibacter keddieii DSM 10542] Length = 261 Score = 55.7 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 27/135 (20%), Positives = 51/135 (37%), Gaps = 12/135 (8%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A +V ++ P V+++ L G +T + L V P +G Sbjct: 58 VVAALVVGLATTLVVHRLSPTPEPRDPVVVASTALPAGTTLTADHLRTVRLPSAVTPEGA 117 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISS 140 P+ + G + VP+ G + LVD + G P G A + + Sbjct: 118 ------PDDADTVVGRTLAVPVTTGTVLGDTLLVDDTSTG-----PPGTVVAAVRL-AEP 165 Query: 141 AVGGMIKPNDHVDVV 155 A+ ++ P VD++ Sbjct: 166 ALLAVLTPGTRVDLL 180 >gi|229818382|ref|ZP_04448663.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM 20098] gi|229784252|gb|EEP20366.1| hypothetical protein BIFANG_03684 [Bifidobacterium angulatum DSM 20098] Length = 221 Score = 55.7 bits (133), Expect = 7e-06, Method: Composition-based stats. Identities = 25/179 (13%), Positives = 58/179 (32%), Gaps = 24/179 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++ + +A G + + + + P V + + G + + PI Sbjct: 55 TDTIVTAATPIARGTTIRHDDVVMMTVPASPVTGKALHTT------DKAVGSIAQHPIEA 108 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-------MV 157 G P+ G+ G + + G + ++ S + P D V +V Sbjct: 109 GQPLYA------GSVGKAPTITTGDTVLDIAVANSINA---LIPGDTVSLVSAVGCEPTS 159 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 + + +P + S ++ + D + T+ L P A ++ A + Sbjct: 160 QEHNNEQPAACTLASQAMIM--ETKARQDGNSTERNLLTVALDPQSAIRVMKAGESGAI 216 >gi|297242988|ref|ZP_06926926.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD] gi|296889199|gb|EFH27933.1| hypothetical protein GVAMD_1000 [Gardnerella vaginalis AMD] Length = 259 Score = 55.3 bits (132), Expect = 8e-06, Method: Composition-based stats. Identities = 43/249 (17%), Positives = 87/249 (34%), Gaps = 65/249 (26%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R V + L AG++A+ +VS E + + ++K ++ G V+ Sbjct: 22 RRQRAFVRKIIIVLCAGMMALLVVSTIIDSQETQV---------IAVAKHNIQQGSRVSV 72 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N + +V P+ VF+ + + NA ++ I KG PI L Sbjct: 73 NDIAYVRVPKHKVFNQALSNNISANAS-----IVATCEIRKGMPILQTLLSKIP------ 121 Query: 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK----PTVTV---------- 169 +PKG + T+ + ++ + P + +D+ + + + + + Sbjct: 122 RIPKGFTSITIHL---ASADHTLLPGEKIDLAFSKPVQDEEISNSQNAEIHNSEKSKSNT 178 Query: 170 --------------------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQ 203 V+ N+ V+ I + + + +T TL + Sbjct: 179 VTNNDKNKNHDIEENNIAEIDERYVSVVHNVMVMQITQSTQASQNQQ--NTTTLAMPAAD 236 Query: 204 AKALVAAQS 212 A L+ AQS Sbjct: 237 ALRLLQAQS 245 >gi|258510582|ref|YP_003184016.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477308|gb|ACV57627.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 264 Score = 55.3 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 22/198 (11%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A +AG+ A+ LV+ + + + ++ DL VG + + P Sbjct: 17 AWIAGLAALGLVTAFVMDR---VATHKVPMATAYVASHDLTVGETIGAKDVTRTVVPVST 73 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATM 134 + G + G V P+ +G + L G G+ L RA + Sbjct: 74 LPPGALTASP--------IGKTVTAPVYQGQVLVGGDLGHMGGVNGVMRLYGMQTRAYPL 125 Query: 135 DISISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAIDHNID------SDE 187 +S S I VDV+ S + +V N VIA+ D +D Sbjct: 126 TLSTQSVPMTDISVGQAVDVIAQMPSPNGAGNVTKLVAQNAPVIAVATAQDVILVGVTDS 185 Query: 188 RVLVGSTAT---LELTPM 202 L + AT + L+P Sbjct: 186 EALQMANATKLYVALSPE 203 >gi|257793106|ref|YP_003186504.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479798|gb|ACV60115.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 272 Score = 55.3 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 68/200 (34%), Gaps = 22/200 (11%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 A +AG+ A+ LV+ + + + ++ DL VG V+ P + P Sbjct: 15 GAAWIAGLAALGLVTAF---VTDRVASHKVPMATAYVAAHDLTVGEVIGPKDVTRTVVPV 71 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAA 132 + G + G V P+ +G + L G G+ L RA Sbjct: 72 STLPPGALTASP--------IGKTVTAPVYQGQVLVGGDLGHMGGVDGVMRLYGMQTRAY 123 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLS-ERKPTVTVVLSNIRVIAIDHNID------S 185 + +S S I VDV+ +V N VIA+ D + Sbjct: 124 PLTLSTQSVPLTDISVGQAVDVIAQMPSPYGAGNITKLVAQNAPVIAVATAQDVILVGVT 183 Query: 186 DERVLVGSTAT---LELTPM 202 D L + AT + L+P Sbjct: 184 DSEALQMANATKLYVALSPE 203 >gi|116671469|ref|YP_832402.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24] gi|116611578|gb|ABK04302.1| hypothetical protein Arth_2923 [Arthrobacter sp. FB24] Length = 256 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 34/218 (15%) Query: 30 HHVQTEEVITENPAKFINVLISKGDLAVGMVVTP--NILEWVAFPEENVFDGFIDDVHQP 87 ++ Q + + + + VL+ + + G V+ ++ + P V + Sbjct: 24 NYAQAADSRAQQGLEPVEVLVVQKAVTAGTPVSKLSESVKLTSIPGTAVPADAVK----- 78 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL--LPKGKRAATMDISISSAVGGM 145 ++ + + V + G+ + +LVD +P G ++ + +GG Sbjct: 79 -SLSDFSDKVTAVDLQPGEQLLKARLVDPNALAAPGTVPVPAGMEEISVLLEPQRVIGGR 137 Query: 146 IKPNDHVDVVMVRSLSERKPTVTVVLSNI------------RVIAIDHNIDSDERVLVGS 193 + D V V + + ++ V ++I +V+ E S Sbjct: 138 LAAGDTVGVYISYKMDDKAGADAPVSNDIKGFKEFTGKAFHKVLVTSVQQAPPETTKDAS 197 Query: 194 T------------ATLELTPMQAKALVAAQSVAKLSLV 219 + TL + A +V K+ L Sbjct: 198 SADGPALPSGSVYVTLAREDVDAAEIVFGAEFGKIWLS 235 >gi|170724969|ref|YP_001758995.1| hypothetical protein Swoo_0604 [Shewanella woodyi ATCC 51908] gi|169810316|gb|ACA84900.1| conserved hypothetical protein [Shewanella woodyi ATCC 51908] Length = 279 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 41/239 (17%), Positives = 85/239 (35%), Gaps = 30/239 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M ++L+ I+ +A +L+S T+ V + AK + +K L G Sbjct: 1 MLNSKLIFIIAFIAVLTGLYGVADKLLSTSESVTQPVSDDGIAKTFTLWQTKSSLNKGEH 60 Query: 61 VTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-N 118 ++ L+ V + ++ G DV Q L + + G + E+L G + Sbjct: 61 LSLADLKRVQLGRDESLALGVNADVELNLDPQSL----LNSSVEAGQYLFPEQLSHPGES 116 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT------------ 166 G L+ + +G + ++ + + I P D +D++ V S Sbjct: 117 GYLNLITREGMTLYPLTVATRNMIQDYILPGDEIDIMTVSSPQHNLANDMSRLDDFIGLR 176 Query: 167 VTVVLSNIRVIAIDH------------NIDSDERVLVGSTATLELTPMQAKALVAAQSV 213 ++++ +RVI++ + + +E+ P L AQ Sbjct: 177 ASMLMKRVRVISVADSDTDSQSQSSKISPSMKSSDKSQTRIVIEVDPEDLPRLTLAQRT 235 >gi|296130407|ref|YP_003637657.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109] gi|296022222|gb|ADG75458.1| Flp pilus assembly protein CpaB [Cellulomonas flavigena DSM 20109] Length = 241 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 59/184 (32%), Gaps = 24/184 (13%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + V D + L P + + EL G Sbjct: 33 VASQVGSLRTVYRLADDTPAFAELQEGDLVADEVPARWLSPSA------EVTLDELVGRK 86 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 V +L G + + LV + L +R + ++ + V ++P D VD+ V Sbjct: 87 VATNLLAGTMVTSDLLVPPSD------LSTTEREIAISVNQVTGVADRVRPGDRVDIYAV 140 Query: 158 ---------RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 + + V + +V+ +D + S + +V TL L P A A+ Sbjct: 141 FADVPGLAKQVRVLVRDVRVVSVRGSQVV-LDESAASGTQSVVP--VTLALEPDDALAVT 197 Query: 209 AAQS 212 A + Sbjct: 198 YAAA 201 >gi|20808475|ref|NP_623646.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4] gi|20517094|gb|AAM25250.1| hypothetical protein TTE2077 [Thermoanaerobacter tengcongensis MB4] Length = 187 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 63/164 (38%), Gaps = 18/164 (10%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +NV+ + + G V+T ++L + P QE+ G + +K Sbjct: 29 TVNVVAAAKPINAGTVITQDMLTTKSIPASLA-------ADLVKNPQEIVGKSLNTSRVK 81 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 GD I ++ +G + G ++++ +I D + +V++ +++ Sbjct: 82 GDFIPHSIVMQKG-----LEVAPGDVLISINVPYED--AKLISVGDTISLVLLSNIAGGA 134 Query: 165 PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALV 208 +S ++V +I+ + + LE TP +A + Sbjct: 135 NQT---VSGLKVYSIEQTTSAVNGTVSTIAV-LETTPDKASLIA 174 >gi|325067747|ref|ZP_08126420.1| hypothetical protein AoriK_07996 [Actinomyces oris K20] Length = 250 Score = 54.9 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 43/120 (35%), Gaps = 13/120 (10%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 V+ P + VL++ ++ G V+T + P + + + + G Sbjct: 4 SVLRPGPERGQQVLVASRSISAGAVLTEQDVSISNLPAGALPQSPLT------SAGQAVG 57 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + KG + +G L+ L +R + + + + +P VD++ Sbjct: 58 SRAAISLEKGTVLTAS----MTSGYLAQQLGDDERLVQVPVDV---GAELARPGARVDII 110 >gi|229495106|ref|ZP_04388852.1| SAF domain protein [Rhodococcus erythropolis SK121] gi|229318037|gb|EEN83912.1| SAF domain protein [Rhodococcus erythropolis SK121] Length = 234 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 56/127 (44%), Gaps = 8/127 (6%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + V++S DL G V+ + +E + + +G + D + G V Sbjct: 49 DPATDTVAVVVSSRDLTPGQVIADSDVEIREIDSKQLPEGVVSDTDL------VVGRTVA 102 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 PI G+ + ++++R GLS + R + ++ + AV +++ D VDV+ V Sbjct: 103 GPIRSGETVTDVRVLNRRLAGLS-VGTDDARIVPVRLADA-AVAEILRSGDVVDVLTVGP 160 Query: 160 LSERKPT 166 + R T Sbjct: 161 DTSRPDT 167 >gi|310288050|ref|YP_003939309.1| hypothetical protein BBIF_1530 [Bifidobacterium bifidum S17] gi|309251987|gb|ADO53735.1| conserved hypothetical protein [Bifidobacterium bifidum S17] Length = 219 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++ + G + +E P V DG+ +A + G + + I Sbjct: 50 TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 103 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155 G P+ + R G+ + + + I D +D+V Sbjct: 104 GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDAST 154 Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 S E + VL+ A + D+ + G+ T LTP +A +++ AQ + Sbjct: 155 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 211 Query: 215 KL 216 + Sbjct: 212 PI 213 >gi|307721766|ref|YP_003892906.1| SAF domain-containing protein [Sulfurimonas autotrophica DSM 16294] gi|306979859|gb|ADN09894.1| SAF domain protein [Sulfurimonas autotrophica DSM 16294] Length = 292 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 82/219 (37%), Gaps = 35/219 (15%) Query: 13 GVFALVAGIIAMRL-VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + ++AG++ V+ + E I V ++ +L G ++ ++ Sbjct: 8 IIMGIMAGLVLFSSSVALLLYLKQSKHKETAQNNIEVFVAAKNLKKGDLLDAGSIKKAKL 67 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL------------VDRGNG 119 P+ + P E+ RV I K +PIRLEK+ V + Sbjct: 68 PKSYIS-------FTPLTDSEIISHYARVNIYKDEPIRLEKISALKPVEKIKQTVKKSET 120 Query: 120 GLSSLLPKGKRA----ATMDISISSAVGGMIKPNDHVDV--VMVRSLSERKPTVTVVLSN 173 + + L K ++ ++ +S+ +++ D+VD+ V+ S + + Sbjct: 121 KVQTTLNKVQQVTEDTLSVSLSVFKNKNTLLRGGDYVDIASVIPSSTKTDNFNTRYIALH 180 Query: 174 IRV---------IAIDHNIDSDERVLVGSTATLELTPMQ 203 +++ ++ + ++ ++++ T ++P Sbjct: 181 VKINNFVSNGKTLSTPISYNAKKQIIRADTIVFLMSPKD 219 >gi|308235642|ref|ZP_07666379.1| hypothetical protein GvagA14_05378 [Gardnerella vaginalis ATCC 14018] gi|311115187|ref|YP_003986408.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC 14019] gi|310946681|gb|ADP39385.1| hypothetical protein HMPREF0421_21303 [Gardnerella vaginalis ATCC 14019] Length = 223 Score = 54.5 bits (130), Expect = 1e-05, Method: Composition-based stats. Identities = 24/172 (13%), Positives = 67/172 (38%), Gaps = 27/172 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L+ ++ F VA +IA+ +++ + + ++ D++ G ++ Sbjct: 29 RQKALLLNALTIFFISVATLIAINMITSCQ------------ETQIIPVAIRDISKGTLI 76 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + L +V P+ +VF+ I+ NA+ + I G PI ++ + Sbjct: 77 KQDDLSYVNVPKNSVFNHVINKDLIKNAI------IATCNIKYGMPIFTSQITQQ----- 125 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 + +P G ++ ++ ++ + +++ + + +V N Sbjct: 126 -AKIPPGFTTISIKLASNNQD---LNIGENISIAFSKVSRGDHNENDIVQEN 173 >gi|119714038|ref|YP_919180.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119525947|gb|ABL79317.1| SAF domain [Nocardioides sp. JS614] Length = 259 Score = 54.5 bits (130), Expect = 2e-05, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 94/245 (38%), Gaps = 24/245 (9%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K R G ++ V ++A +IA + + EE VL+ + G + Sbjct: 36 KAPRKYGQMLMSVLVVIAAVIAGGWLYVNKGGVEE-----------VLVVAQPIPAGHPI 84 Query: 62 TPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 T + + P + ID + + + G V +L G + + L Sbjct: 85 TEDDVRTSKDPLLVSRSVSGIDGAILVSDVDSVFGQRTTVALLPGQVLTQDSLT------ 138 Query: 121 LSSLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 S LLP +GKR +++ + V + P VD + V + L + VI+ Sbjct: 139 -SDLLPQEGKRLIAVNL-PAGRVPDTLAPGSVVDAIAVPQEGQSGDPKA--LDDPVVISA 194 Query: 180 DHNIDSDERVLVGS-TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + S ++ G+ T+ + AK + A +V +L+L+ I + +P+ S D Sbjct: 195 GATVYSSKQSQDGTVVVTILIAETDAKTVAAYGAVGQLTLLQAPITEGDPADSAPQDDSA 254 Query: 239 VQEEG 243 +G Sbjct: 255 TGGQG 259 >gi|311064926|ref|YP_003971652.1| hypothetical protein BBPR_1589 [Bifidobacterium bifidum PRL2010] gi|313140839|ref|ZP_07803032.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171] gi|310867246|gb|ADP36615.1| Conserved hypothetical protein [Bifidobacterium bifidum PRL2010] gi|313133349|gb|EFR50966.1| cation transport ATPase [Bifidobacterium bifidum NCIMB 41171] Length = 219 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++ + G + +E P V DG+ +A + G + + I Sbjct: 50 TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 103 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155 G P+ + R G+ + + + I D +D+V Sbjct: 104 GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDASA 154 Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 S E + VL+ A + D+ + G+ T LTP +A +++ AQ + Sbjct: 155 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 211 Query: 215 KL 216 + Sbjct: 212 PI 213 >gi|83589197|ref|YP_429206.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073] gi|83572111|gb|ABC18663.1| hypothetical protein Moth_0329 [Moorella thermoacetica ATCC 39073] Length = 212 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 83/231 (35%), Gaps = 39/231 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R +GIV+S + AL+ A L + + K + V+ + + G +T Sbjct: 1 MSRKVGIVISLILALI--FTAAILAAGNGKY------RQATKTVEVVKAVRFIPAGERIT 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + + V PE ++L+G +V +LK + + G L+ Sbjct: 53 ADSITTVRVPESMAS-------GLATNPKDLEGKEAKVSLLKDQFVWKD-----AAGELA 100 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT--VTVVLSNIRVIAI- 179 + G + + A G + P + V++ + + + + N+ V + Sbjct: 101 A--GPGMVEVVLPVD--LAASGAVWPGERVNIHIAVKNNNPGSSAPSPKICENVLVTKVL 156 Query: 180 ---DHNIDSDERVLVGST-------ATLELTPMQAK-ALVAAQSVAKLSLV 219 I+ + + T +E+ P + LV A + + LV Sbjct: 157 GQDGVEIEPGKTTGLNPTTNKVPVAVGVEV-PKDVEDVLVQAAANKTVYLV 206 >gi|218290612|ref|ZP_03494714.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239396|gb|EED06593.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 267 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 59/164 (35%), Gaps = 13/164 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 +AG+ + LV+ + E + + ++ DL VG V+ P + P + Sbjct: 20 IAGLAVLGLVTAFVI---ERVATHKVPMAMAFVAAHDLTVGEVIGPKDVTRTKVPVATLP 76 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDI 136 G + G +V P+ +G + L G G+ L RA + + Sbjct: 77 PGAMTVSP--------VGKMVTSPVYQGQVLVGGDLGRMGGVNGVMRLYGTQTRAYPLTL 128 Query: 137 SISSAVGGMIKPNDHVDVVMVR-SLSERKPTVTVVLSNIRVIAI 179 S S + VDV+ S + +V + ++A+ Sbjct: 129 STQSVPMNDVSVGQAVDVIAQMPSPNGAGNVTKLVAQDAPILAV 172 >gi|302530357|ref|ZP_07282699.1| predicted protein [Streptomyces sp. AA4] gi|302439252|gb|EFL11068.1| predicted protein [Streptomyces sp. AA4] Length = 216 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 72/189 (38%), Gaps = 17/189 (8%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 + A + ++S DL G V+ + VA P+ G + +A+ G Sbjct: 41 PPSARGAPATSTVVSARDLPAGSVLRAADVRTVALPDSLRPSGAL------SAIDAAVGR 94 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 L+ G+PI +L+ L + ++ + AV +++P VDVV Sbjct: 95 LLSGAARAGEPITDVRLLGN---NLPVTGEPDAVTVAVRLADA-AVAELLQPGQRVDVV- 149 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDER----VLVGSTATLELTPMQAKALVAAQS 212 + ++ + +V+ V+ + + D+ R G L L A + A+ Sbjct: 150 --AGADTTNSASVLARGASVVTVRRSDDAGNRTLGPPQKGPLVLLALPREVATQVAASSL 207 Query: 213 VAKLSLVLR 221 +++ LR Sbjct: 208 ERPVTVTLR 216 >gi|224283683|ref|ZP_03647005.1| hypothetical protein BbifN4_07627 [Bifidobacterium bifidum NCIMB 41171] Length = 213 Score = 54.1 bits (129), Expect = 2e-05, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 63/182 (34%), Gaps = 28/182 (15%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++ + G + +E P V DG+ +A + G + + I Sbjct: 44 TQPVVVAARLIPRGARIGAEDVEIRQMP---VSDGW---DTALDAANQAAGGIAQTDIAA 97 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--------- 155 G P+ + R G+ + + + I D +D+V Sbjct: 98 GQPLFGAIVSRRPVA------EPGQTVIDVRV---TGTVDGIAAGDVMDLVSGTPCDASA 148 Query: 156 -MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 S E + VL+ A + D+ + G+ T LTP +A +++ AQ + Sbjct: 149 GTTSSRDESAGGRSCVLARS---ATAMDAAHDDAMTGGTLITFALTPDEAISIINAQELG 205 Query: 215 KL 216 + Sbjct: 206 PI 207 >gi|183984494|ref|YP_001852785.1| hypothetical protein MMAR_4524 [Mycobacterium marinum M] gi|183177820|gb|ACC42930.1| conserved hypothetical membrane protein [Mycobacterium marinum M] Length = 219 Score = 53.7 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 68/183 (37%), Gaps = 12/183 (6%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ DL+ G +T + + DG DV L G + Sbjct: 47 PSPDTNLSEVVVAARDLSPGTPLTTADVRLEMRSAATLPDGSQTDV------GALVGATL 100 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P +G+ + +++ G+ S G R + ++ SA+ +I+ D VDV+ Sbjct: 101 ASPTRRGEVLTDVRIL--GSRLAESTAGPGARVVPLHLAD-SALIDLIRVGDVVDVLAAP 157 Query: 159 SLSERK-PTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 ++ P VV ++ V+ + + + + + L A + + L+ Sbjct: 158 PTTQPSPPAAKVVATDAVVVLV--SAKQELQTHADRVVLVALPARLANMVAGSALGQTLT 215 Query: 218 LVL 220 L L Sbjct: 216 LTL 218 >gi|291529651|emb|CBK95237.1| SAF domain [Eubacterium rectale M104/1] Length = 273 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 90/244 (36%), Gaps = 34/244 (13%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI----LE 67 S ALVA ++A+ + + E +V+I+ D+ G ++T + + Sbjct: 20 SLTKALVAILVAI--IGWTGLTFVESYILTDKNVTSVVIASADIPQGTIITKDNAENYFK 77 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG-----LS 122 + V + D+ + ++G + + G+ + ++ + + +S Sbjct: 78 KENVNSDLVTKSTVTDI------KSIEGKFL-TNVAAGEIVTSDRYYETKDTRDLKNPVS 130 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI-AIDH 181 G S ++V G I+ D VD+ + T + N+ + A D Sbjct: 131 LTFAAG--------SAENSVNGTIRGGDIVDIY-TSVTTNDVVTYQLARENVYIENAYDS 181 Query: 182 N---IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWD 238 + IDS ++ V ST ++L A A S L +V D+N + + Sbjct: 182 SYVKIDSADQATVASTFLVKLDEDDAANFKNAISQGDLLMV---KKDINQKDTASVIIPA 238 Query: 239 VQEE 242 E+ Sbjct: 239 KTEK 242 >gi|134298671|ref|YP_001112167.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1] gi|134051371|gb|ABO49342.1| hypothetical protein Dred_0804 [Desulfotomaculum reducens MI-1] Length = 199 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 41/215 (19%), Positives = 77/215 (35%), Gaps = 34/215 (15%) Query: 1 MKLTRL-MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK+ + + V+ VFA+V I + K + V + DL Sbjct: 1 MKIKKHNIFYVLFVVFAVVTAIGVFHGYNTV------------TKKVPVAKAGADLVQDE 48 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + L P + + E+ G+ + I G +R + + Sbjct: 49 MASSKNLVIGQTPIGALQKDTVRHP------DEIKGMYAKGFIPAGTVLRKSMFISFKDA 102 Query: 120 GLSSLLP--KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 G+++ L GK A ++ I ++VGG +K V++ SER+ + V+ Sbjct: 103 GVAARLANYPGKIAVSLGADIYTSVGGELKREYKVNIKSGYKGSEREIAKEAI-----VL 157 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQS 212 E L +TP ++ L +A+S Sbjct: 158 --------SEPTAKKEAIVLAMTPEESTLLTSARS 184 >gi|289642191|ref|ZP_06474342.1| SAF domain protein [Frankia symbiont of Datisca glomerata] gi|289508037|gb|EFD28985.1| SAF domain protein [Frankia symbiont of Datisca glomerata] Length = 275 Score = 53.7 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 8/110 (7%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V+++ DLA G + + V+ P + V G + + Q+ G + + +G Sbjct: 53 TPVVVAAADLAGGATMAATDVRMVSLPTDVVPVGAVR------SPQDAVGRTLTAAVRQG 106 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 +PI +++ G G AA + I+ + +V ++ DHV+V+ Sbjct: 107 EPITDARVLGPGLITRRQA-AAGLVAAPVRITDAGSVL-FLRVGDHVNVL 154 >gi|196048041|ref|ZP_03115219.1| hypothetical secreted protein [Bacillus cereus 03BB108] gi|196021297|gb|EDX60026.1| hypothetical secreted protein [Bacillus cereus 03BB108] Length = 276 Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 55/134 (41%), Gaps = 14/134 (10%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 + TE+ K + +++K D+A +T +++ FP + +++ G Sbjct: 1 MQTESKVKPVKAIVTKQDIAPHTKITEDMILEKEFPMSGIPP------KSALKKEDVVGK 54 Query: 97 LVR--VPILKGDPIRLEKLVD----RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND 150 + I K + + K+ G +S L G+ A + + + ++ G I PN Sbjct: 55 WTKDGYGIAKNSYMNVSKIAKQEELPDAGVIS--LKPGEYAFPVLVDLETSNGNAIVPNT 112 Query: 151 HVDVVMVRSLSERK 164 +VD+ +L K Sbjct: 113 YVDLYFATNLEAEK 126 >gi|326383759|ref|ZP_08205444.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197523|gb|EGD54712.1| SAF domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 182 Score = 53.4 bits (127), Expect = 3e-05, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 10/133 (7%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M L+ V + VL + DL G V+T + L V P V + D Sbjct: 1 MALLLVIAATASVVYSHRRPDAPRVLTAAADLRPGTVLTADDLTSVPMPAATVPASALRD 60 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISIS-SAV 142 + G + P+ +G+ I +L+ L++ L A + + + +V Sbjct: 61 TGKA------VGQRLTGPVTRGEIITETRLL---TSRLAAQLTGSSTARLVPVRPADESV 111 Query: 143 GGMIKPNDHVDVV 155 +++ D VDV+ Sbjct: 112 ATLVRQGDTVDVL 124 >gi|329945240|ref|ZP_08293071.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] gi|328529283|gb|EGF56204.1| putative Flp pilus assembly protein CpaB [Actinomyces sp. oral taxon 170 str. F0386] Length = 261 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 15/120 (12%), Positives = 41/120 (34%), Gaps = 13/120 (10%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 V+ P + VL++ ++ G ++T + P ++ + + +++ G Sbjct: 15 SVLRPGPEQGRQVLVAARQVSAGTLITEQDVTTSRLPASSLPQSGL------ASSEQVVG 68 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + G + + L +R + + + + P VDV+ Sbjct: 69 TRAAITLEPGTVLTSSMTSGHE----AEQLGPDERLVQVPVDV---GAELAHPGTRVDVI 121 >gi|169628178|ref|YP_001701827.1| hypothetical protein MAB_1083c [Mycobacterium abscessus ATCC 19977] gi|169240145|emb|CAM61173.1| Conserved hypothetical protein [Mycobacterium abscessus] Length = 224 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 81/216 (37%), Gaps = 26/216 (12%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + + + L A ++A R + V+++ DL+ G +++ + + Sbjct: 31 IAAAILVLFAALLAFR-------------PDPADDRAEVVVAARDLSPGTILSSDDVRLE 77 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + DG + L G + P+ +G+ + +++ ++ K Sbjct: 78 KRSTTILPDGVRTESAT------LFGATLAGPVRRGEMLTDVRVLGPRLAESAA--GKDA 129 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLS----ERKPTVTVVLSNIRVIAIDHNIDS 185 R + ++ ++ V MI+ D VD++ V P VL++ V+ + + Sbjct: 130 RIVPVPLADAATVD-MIRTGDVVDILTVAGHEPGAARDTPAEPTVLASGAVVVLVSPKPA 188 Query: 186 DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + V + L P QA + A V ++L R Sbjct: 189 AKGVGTERVVMVALPPQQANRVAAIALVQAVTLTFR 224 >gi|258654757|ref|YP_003203913.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258557982|gb|ACV80924.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 219 Score = 53.0 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 36/173 (20%), Positives = 65/173 (37%), Gaps = 20/173 (11%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 VL+ DL +G V+ + A DG + D + G ++ +G Sbjct: 64 TPVLVLTRDLPIGAVLLATDVTTTAVLRP--PDGALTDPGP------VAGRVLSGAARRG 115 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + + +LVD G+ A + + ++ V +++P HV VV V + Sbjct: 116 EVLTDVRLVDPIGPAP----GPGRVAVPIRPADAT-VIDLLRPGMHVAVVAV---DDAGG 167 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSL 218 +V + ++ D DE+ V L + A +VAA L+L Sbjct: 168 ATALVADAVVLLVGDATARRDEQAPVV----LAVPQDSADQVVAAALTGTLAL 216 >gi|152967638|ref|YP_001363422.1| SAF domain protein [Kineococcus radiotolerans SRS30216] gi|151362155|gb|ABS05158.1| SAF domain protein [Kineococcus radiotolerans SRS30216] Length = 224 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 35/150 (23%), Positives = 63/150 (42%), Gaps = 23/150 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ DL VG V+ P + V P E + DG +D L G ++ P+ +G+ + Sbjct: 56 LVAVRDLPVGAVLGPGDVREVQRPGETLPDGLLDRT-------RLTGAVLAGPVRRGEVL 108 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS--LSERKPT 166 + + + + P G A T+D+ + + G + P HVDV+ L+ Sbjct: 109 TDAR---AADASVLTGQPAGTLAVTVDVGDPAVLAG-LGPGVHVDVLARTEDPLTGAATG 164 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTAT 196 + +++ V+ RV TAT Sbjct: 165 AERIATDVVVL----------RVPPARTAT 184 >gi|260904284|ref|ZP_05912606.1| SAF domain-containing protein [Brevibacterium linens BL2] Length = 209 Score = 52.6 bits (125), Expect = 5e-05, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 53/174 (30%), Gaps = 22/174 (12%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + ++++ +L G + L V FP V D V + + G Sbjct: 41 VLTPDPGGTPIVVANRNLPPGSQLRTQDLTLVEFPARLVPDKAFTSVSDADHKRTSAG-- 98 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVM 156 + KG P+ ++D+ LP G M + A +++P + + Sbjct: 99 ----LSKGSPLTQSAVLDQ------QALPDGSTDLLMPVRLADDASAALLQPGQRIRLFS 148 Query: 157 VRSLSERKPTVTVVLSNIRVIAIDHNIDSDE--RVLVGSTATLELTPMQAKALV 208 V V I +D E G ++ L+ A + Sbjct: 149 SLPDGGSDIVVKEV-------TIARLVDKGEGISAESGQLVSVILSSGDAARIA 195 >gi|213966094|ref|ZP_03394282.1| SAF domain protein [Corynebacterium amycolatum SK46] gi|213951292|gb|EEB62686.1| SAF domain protein [Corynebacterium amycolatum SK46] Length = 205 Score = 52.6 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 44/222 (19%), Positives = 80/222 (36%), Gaps = 37/222 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 ++ T + IV VF G+ A+ ++P T V+IS +A G Sbjct: 16 LRPTTIRRIVALTVFLCAVGLAAVESLTPRSGHT------------RVVISAKSIAAGAS 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG-NG 119 V + + P + V G + D+ + G + + G+ +++V Sbjct: 64 VAEQDVAFKDIPRDLVPGGAVTDIA------AVRGRTLATGMSPGEIFTEQRMVGPSLAK 117 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 L+ A T+ S + + D VD+V ++ + + RV+ Sbjct: 118 SLTGTSESKIIAITLTDSGIVSA---LHTGDSVDIVST---ADERGMAAPIAHGARVV-- 169 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVL 220 +V L P A +VAA S+A L+L+L Sbjct: 170 ---------NIVDDEVVLVALPAGAAEVVAATSLASPLTLLL 202 >gi|134298817|ref|YP_001112313.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1] gi|134051517|gb|ABO49488.1| hypothetical protein Dred_0953 [Desulfotomaculum reducens MI-1] Length = 232 Score = 52.2 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 32/158 (20%), Positives = 58/158 (36%), Gaps = 23/158 (14%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++ + V+ + + N + I++ + + G V+TP + F + Sbjct: 19 MLIVIAVTIPATKYQREWVANNQETISLPVPAHVIYAGHVITPGDITIRKFLKAAQEPTS 78 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI-S 139 I D E+ G + + + IR +KLV N +L G+ ++ Sbjct: 79 IQDT------TEITGRVAASDLYPMEQIRADKLVPPEN-----ILNTGEAYVSIKADSLE 127 Query: 140 SAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 +GG I+PN VDV V L N V+ Sbjct: 128 QILGGQIQPNMQVDVYHVVD-----------LENAPVL 154 >gi|84498693|ref|ZP_00997446.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649] gi|84381030|gb|EAP96917.1| hypothetical protein JNB_16856 [Janibacter sp. HTCC2649] Length = 191 Score = 52.2 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 P + L++ DL G V+T + L E+ G + V + +++L G L+ Sbjct: 12 RPPPPPTTSALVAARDLPSGAVLTADDLRTTQIRGESDSPGTVGAVGR---VRDLVGRLL 68 Query: 99 RVPILKGDPIRLEKLVDRGNG 119 P+ G+ + +LV R Sbjct: 69 TSPVAAGELVTTSRLVPRTAA 89 >gi|145222484|ref|YP_001133162.1| SAF domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|315442930|ref|YP_004075809.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp. Spyr1] gi|145214970|gb|ABP44374.1| SAF domain [Mycobacterium gilvum PYR-GCK] gi|315261233|gb|ADT97974.1| flagellar basal body P-ring biosynthesis protein [Mycobacterium sp. Spyr1] Length = 217 Score = 52.2 bits (124), Expect = 7e-05, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 70/174 (40%), Gaps = 11/174 (6%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ DLA G+ +T + + + DG + DV E+ + P +G+ Sbjct: 54 EVVVTVRDLAPGVALTAADVRVESRAAPLLPDGALTDV------DEVVDATLAGPARQGE 107 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + +L+ ++ R + ++ ++ V +++P D VD+ V + ++ Sbjct: 108 VLTDVRLLGPRLARSAA--GPDARIVPIPLADAALVD-LVRPGDVVDI--VAAPADDAVA 162 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V ++ V+ + + G + L A+ + A V ++L L Sbjct: 163 ARTVATDAIVVLVSAAENGIGARAGGRVVLVALPAAGAERVAGAALVEAITLTL 216 >gi|325518464|gb|EGC98163.1| Flp pilus assembly protein CpaB [Burkholderia sp. TJI49] Length = 178 Score = 52.2 bits (124), Expect = 8e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 18/101 (17%) Query: 147 KPNDHVDVVMVRSLSER--------KPTVTVVLSNIRVIAIDHNI----------DSDER 188 +P + VDV + + +++S +RV++ S+ + Sbjct: 2 RPGNFVDVFLNLKREGNSMLDGEVSQTQARLLMSRVRVLSFGDATPDRDSGNNTNGSNGQ 61 Query: 189 VLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPS 229 A L + Q AL +S +L+L LR+ D + Sbjct: 62 PSGVRIAVLAVPTAQVDALTLGESSGRLTLALRNPRDDELA 102 >gi|167039378|ref|YP_001662363.1| SAF domain-containing protein [Thermoanaerobacter sp. X514] gi|300914019|ref|ZP_07131336.1| SAF domain protein [Thermoanaerobacter sp. X561] gi|307725296|ref|YP_003905047.1| SAF domain-containing protein [Thermoanaerobacter sp. X513] gi|166853618|gb|ABY92027.1| SAF domain [Thermoanaerobacter sp. X514] gi|300890704|gb|EFK85849.1| SAF domain protein [Thermoanaerobacter sp. X561] gi|307582357|gb|ADN55756.1| SAF domain protein [Thermoanaerobacter sp. X513] Length = 181 Score = 51.8 bits (123), Expect = 9e-05, Method: Composition-based stats. Identities = 30/173 (17%), Positives = 65/173 (37%), Gaps = 28/173 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M ++ A A LV ++Q E V+I + D+ G V++ + + Sbjct: 1 MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVIVEKDIPAGTVISEDAV 50 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + V P V + ++ ++ G +V+ ++GD I +E L + + L Sbjct: 51 KVVDIPASAVRPDY------ARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----AEALG 100 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 T+ ++ ++ D V ++ + VL +VI++ Sbjct: 101 PDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145 >gi|326773108|ref|ZP_08232392.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505] gi|326637740|gb|EGE38642.1| flp pilus assembly protein CpaB [Actinomyces viscosus C505] Length = 261 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 13/120 (10%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 V+ P + VL++ ++ G ++T + P + + + ++ G Sbjct: 15 SVLRPGPQRGQQVLVASHAISAGAILTDQDVSISTLPTGALPQSPLT------STEQAVG 68 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + KG + +G L+ L +R + I + + +P VD++ Sbjct: 69 NRAAISLEKGTVLTAS----MTSGSLAQQLGDDERLVQVAIDV---GAELARPGARVDII 121 >gi|118619767|ref|YP_908099.1| hypothetical protein MUL_4696 [Mycobacterium ulcerans Agy99] gi|118571877|gb|ABL06628.1| conserved hypothetical membrane protein [Mycobacterium ulcerans Agy99] Length = 224 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 46/117 (39%), Gaps = 9/117 (7%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 V+++ DL+ G +T + + DG DV L G + Sbjct: 47 PSPDTNLCEVVVAARDLSPGTPLTIADVRLETRSAATLPDGPQTDV------GALVGATL 100 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 P +G+ + +++ G+ S G R + ++ SA+ +I+ D VDV+ Sbjct: 101 ASPTRRGEMLTDVRIL--GSRLAESTAGPGARVVPLHLAD-SALIDLIRVGDVVDVL 154 >gi|156741665|ref|YP_001431794.1| SAF domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156232993|gb|ABU57776.1| SAF domain protein [Roseiflexus castenholzii DSM 13941] Length = 336 Score = 51.4 bits (122), Expect = 1e-04, Method: Composition-based stats. Identities = 44/282 (15%), Positives = 84/282 (29%), Gaps = 77/282 (27%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVG--MVVTPNILEWVAFPE---ENVFDGFIDD 83 P T P V+ ++ D+ + T +L PE D + Sbjct: 30 PAPETTALPQEPTPVPLRKVVAARVDIPANTVLTDTETLLTLRDIPEPEYNAAPDQYFT- 88 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP-------KGKRAATMDI 136 ++ EL + + + IR L + GLS +P + +++ Sbjct: 89 -----SVGELTTKVTLRALNATEIIRARDLT---DAGLSFQVPPPDTIDAPRNKVFPLEV 140 Query: 137 SISSAVGGMIKPNDHVDVVMVRSLSER-------------------------KPTVTVVL 171 + V I+P D VD+VM + ++ Sbjct: 141 GNLTGVADQIRPGDSVDLVMTYEIRRLIIRPSLTTDPETGQLVVTPIEETLVDRVTKTMV 200 Query: 172 SNIRVI-----AIDHNID-------SDERVLVGSTA-----T----------LELTPMQA 204 N++V+ AI + E S+A T L +T +A Sbjct: 201 QNVQVLRVLKPAIPQDTGTPTPGGAQGEPAPPPSSAQQQGDTYVPGAQWILLLAMTDQEA 260 Query: 205 KAL--VAAQS--VAKLSLVLRSIADLNPSSSEDSDVWDVQEE 242 + + Q +++LVLR D + + + + Sbjct: 261 EIVKFTLDQQDPKPQITLVLRGRDDGDIEETTGITLRLLTSR 302 >gi|257792958|ref|YP_003186357.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479650|gb|ACV59968.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 235 Score = 51.0 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 21/155 (13%), Positives = 47/155 (30%), Gaps = 22/155 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V G IA + +E V +++ L Sbjct: 1 MKSWVRYTLATTLFVVGVGGSIAYNQFVSPMLTSEW-----------VYVARTQLPADTP 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + + +E + P+ V I + L G P+ + + Sbjct: 50 IQASDVERIRVPKSEVSPDAITNAEG------LMGTYTAQPVDQNQVLTALDTEPDP--- 100 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + G + + ++V ++ D+VD++ Sbjct: 101 --FTITPGTEDVPIPSTWIASVSETLRQGDYVDLI 133 >gi|254478346|ref|ZP_05091725.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214035704|gb|EEB76399.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 181 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 65/173 (37%), Gaps = 28/173 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M ++ A A LV ++Q E V++ + D+ G V++ + + Sbjct: 1 MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVVVEKDIPAGTVISEDAV 50 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + P V + ++ ++ G +V+ ++GD I +E L + + L Sbjct: 51 KIIDVPASAVRPEY------ARSLTDVVGKVVKEGRVRGDFIPVEILTSKD----AQPLG 100 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 T+ ++ ++ D V ++ + VL +VI++ Sbjct: 101 PDHAVMTVPVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145 >gi|25027510|ref|NP_737564.1| hypothetical protein CE0954 [Corynebacterium efficiens YS-314] gi|259507082|ref|ZP_05749982.1| secreted protein [Corynebacterium efficiens YS-314] gi|23492792|dbj|BAC17764.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259165360|gb|EEW49914.1| secreted protein [Corynebacterium efficiens YS-314] Length = 215 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 63/189 (33%), Gaps = 27/189 (14%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +++ A I+A L + + T+ V++ D+ G +T LE Sbjct: 16 LLLRRALAATLLIVAGFLFAGSLISTDP----------RVVVFSRDIPAGTEITDQDLEL 65 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD-------RGNGGL 121 P + V D I +E G + + G+ + + V + Sbjct: 66 RRIPADLVPDQVIR------IPEEALGRITASSVTAGEWVTAPRFVGTELVSSLTDDIDP 119 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 ++ + ++ S + ++ P D + V+ S + + S +V+ + Sbjct: 120 AAASTDPFNMVPLKLADPSIIP-LLLPGDTISVI---SQNPDTGLPATIASGGKVVLVGD 175 Query: 182 NIDSDERVL 190 +D + Sbjct: 176 TAGADPATV 184 >gi|33152387|ref|NP_873740.1| flp operon protein C [Haemophilus ducreyi 35000HP] gi|21326706|gb|AAL92466.1| unknown [Haemophilus ducreyi] gi|33148610|gb|AAP96129.1| flp operon protein C [Haemophilus ducreyi 35000HP] Length = 278 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 82/221 (37%), Gaps = 26/221 (11%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAM----RLVSPHHVQTEEVITENPA-------KFINVL 49 M L + + + A+ G + +L +P T+ + + P K I + Sbjct: 1 MNYRSLFILSI-IILAVGFGGLFFLPDDQLNTPQQTTTQGEVAKAPQSKPSQSEKVITTV 59 Query: 50 ISKGDLAVGMVVTPNI--LEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 D+ G ++ P + + PE + + + + ++ A + L G LV + KG Sbjct: 60 TLNHDIEKGTLLQPEDYTVSELTVPENSPLVESDVKELVDSAANKSLQGFLVAENLSKGS 119 Query: 107 PIRLEKLVDRGNGG--LSSLLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRS---- 159 + + L+D + L S+ P+ + A + I + I+ D V V V+ Sbjct: 120 LLNQKVLIDPEDPRFILMSIDPQQEVAYRIYIKEAERYLLDSIRGGDMVSVYSVQQDLGR 179 Query: 160 LSERKPTVTVVLSNIRVIAID----HNIDSDERVLVGSTAT 196 + ++ + N +V+ + D + T T Sbjct: 180 PERDQNSLAKIAENFKVLKVKKFSPQQADPNNDENTKKTDT 220 >gi|226365103|ref|YP_002782886.1| hypothetical protein ROP_56940 [Rhodococcus opacus B4] gi|226243593|dbj|BAH53941.1| hypothetical protein [Rhodococcus opacus B4] Length = 227 Score = 50.7 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 34/162 (20%), Positives = 66/162 (40%), Gaps = 14/162 (8%) Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 DL G+V+T +E V ++ DG + A+ ++DG + P G+ + ++ Sbjct: 66 DLQPGVVLTKADVELVELEAGSLPDGAVT------AVADVDGRTLAGPTRAGETLTDVRV 119 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM----VRSLSERKPTVTV 169 + ++ + R + ++ AV +++ D VDV+ S +R+P TV Sbjct: 120 LGPRLAAAAAGM-DDARIVPVRLAD-PAVTELLREGDRVDVLTVDPDTPSNPDRRPGATV 177 Query: 170 VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 + S V+ + + R L L A + AA Sbjct: 178 LASRAVVVLV--TPSENGRDQRERVVMLALPASDATTVAAAS 217 >gi|300790122|ref|YP_003770413.1| hypothetical protein AMED_8314 [Amycolatopsis mediterranei U32] gi|299799636|gb|ADJ50011.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 205 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 46/122 (37%), Gaps = 12/122 (9%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 +I A+ +++ DL G + + +E G + + + + Sbjct: 36 AVFLIHPGSARGAPTVLAAHDLPSGATLGAADVRLADLSDEARPTGVL------STLDAV 89 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 DG L+ + G+P+ +L + + G + ++ AV +++P VD Sbjct: 90 DGRLLAGAVRAGEPLTDVRL-----ATVPAPADPGTATVPVRLADV-AVAALLRPGQRVD 143 Query: 154 VV 155 VV Sbjct: 144 VV 145 >gi|256372054|ref|YP_003109878.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008638|gb|ACU54205.1| SAF domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 237 Score = 50.3 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 27/196 (13%), Positives = 62/196 (31%), Gaps = 26/196 (13%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 + L + + + ++ + V ++ + G + Sbjct: 26 SSALRIVGSIVLAGVSLALLVASWLGGVRNAGAAVG----------VVVTRPIPAGATIE 75 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + V A+ + G V I G + ++ Sbjct: 76 RADLGLASI---TVPQAV---RATLLAVDDAVGRTAAVTIAPGTLLERSMVLGPRPRTPV 129 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 R+ T+ + +S G+I+P D VDV+ + S P + + + V+ D Sbjct: 130 -------RSITIAVPSTSVASGVIEPGDRVDVLAT-TQSASSPATLTIATQLLVL--DVQ 179 Query: 183 IDSDERVLVGSTATLE 198 S + ++ +T +L+ Sbjct: 180 ASSGDELVTVATDSLD 195 >gi|323493935|ref|ZP_08099052.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] gi|323311876|gb|EGA65023.1| pilus assembly protein CpaB [Vibrio brasiliensis LMG 20546] Length = 258 Score = 50.3 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 79/232 (34%), Gaps = 30/232 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++ ++V+ V I +S Q E+VI P + VL+ G G ++ Sbjct: 2 NRTIILVLVTLVIFSTFVFINNTYLSSSGEQQEQVIKSEPK--VAVLVVSGAAKKGQIIK 59 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 +I + V +G D + + G L + + G+ I E + + G+ Sbjct: 60 SSIHKTELVNLSQV-EGV--DYTPKDEIHIEPGALFKRDLNPGELISQEDISNPGDRDYM 116 Query: 123 SL-LPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVTVV 170 L + KG+ ++ V + + P D V V S V+ Sbjct: 117 FLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSDTNLLEDGYGDVGGLVSRVI 176 Query: 171 LSNIRVIAI--------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 +S RV+ + + + + +V + L L AQ V Sbjct: 177 ISGARVLQVIKGEEDEDAQDAEDKQYSIV-----VALRMRDVLKLEMAQKVG 223 >gi|284045239|ref|YP_003395579.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684] gi|283949460|gb|ADB52204.1| hypothetical protein Cwoe_3787 [Conexibacter woesei DSM 14684] Length = 230 Score = 50.3 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 44/208 (21%), Positives = 78/208 (37%), Gaps = 22/208 (10%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 + E + + +VL+++ +A G + + P + D Sbjct: 23 SSVQRREAALGQALGPLTHVLVTRAPVAAGAPLADARPALRSLPRRYAPPDALTDPAV-- 80 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG--MI 146 LDG V + G + L ++ +P G+ ++ A+G I Sbjct: 81 ----LDGAQAAVALPVGAYVTGASLRTPA----AAAVPVGR---GERVAEVVALGDPESI 129 Query: 147 KPNDHVDVVMVRSLSERKPTVTVV-LSNIRVI----AIDHNIDSDERVLVGS-TATLELT 200 VDV++ R +P TV+ L ++ V+ I +D+ A+L +T Sbjct: 130 VAGSRVDVLVTRDTDGDRPGETVLALEDVEVLAAAAPPAAEIGADDAGAGARVAASLRVT 189 Query: 201 PMQAKALVAAQSVAK-LSLVLRSIADLN 227 QA L AAQS A+ L L+ R+ D Sbjct: 190 VRQAVYLAAAQSFARELRLLPRAPQDRA 217 >gi|167038605|ref|YP_001666183.1| SAF domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116994|ref|YP_004187153.1| SAF domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857439|gb|ABY95847.1| SAF domain [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319930085|gb|ADV80770.1| SAF domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 181 Score = 50.3 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 64/173 (36%), Gaps = 28/173 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M ++ A A LV ++Q E V+I + D+ G V++ + + Sbjct: 1 MSKIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVIVEKDIPAGTVISEDAV 50 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + V P V + ++ + G +V+ ++GD I +E L + S L Sbjct: 51 KVVDVPASAVKPNY------ARSLSNVVGKVVKEGRVRGDFIPVEILTSKD----SQPLG 100 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 T+ ++ ++ D V ++ + VL +VI++ Sbjct: 101 PDHAVMTVSVTSVE--AKTLQSGDTVSFIVFDQTGSK------VLDGFKVISV 145 >gi|317133361|ref|YP_004092675.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3] gi|315471340|gb|ADU27944.1| hypothetical protein Ethha_2449 [Ethanoligenens harbinense YUAN-3] Length = 287 Score = 50.3 bits (119), Expect = 3e-04, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 86/247 (34%), Gaps = 51/247 (20%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 RL+ ++S A+V G + LV+ + T + V+ +K + G +TP Sbjct: 37 KRLVASILSIGLAVVVGFGGVFLVNRLTMAT-----------VPVVRAKEIIPQGTQITP 85 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 N++E + N+ + + G I+ D I +KL Sbjct: 86 NMIEVDQVSKYNLQSNVTGNTSL------VVGAYATTEIMPQDNITGDKLSK---SNPVY 136 Query: 124 LLPKGKRAATMDI-SISSAVGGMIKPNDHVDVVMVRSLSE-----------RKPTVTVVL 171 L G+ ++ + ++S A+ G +K D V V + + + T L Sbjct: 137 TLDTGEMLVSVPVKNLSDALAGQLKAGDIVRVSALVASGSTAGSNNAGGTANQTTTPAEL 196 Query: 172 SNIRVIAI----DHNI---DSDERVLVGST-----------ATLELTPMQAKALVAAQSV 213 ++V A+ + + + +G+T TL + Q L Sbjct: 197 QYVKVAAVAASNGQSAAVSQAQAKTAIGTTTSSNTSNLPASVTLYVNEQQLSRLTQMSQS 256 Query: 214 AKLSLVL 220 +L+ L Sbjct: 257 -ELTFAL 262 >gi|291575287|gb|ADE10212.1| hypothetical protein [Actinoplanes liguriensis] Length = 266 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 38/227 (16%), Positives = 61/227 (26%), Gaps = 42/227 (18%) Query: 48 VLISKGDLAVGM---VVTPNILEWVA-FPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 +L++ + G + L P V G + L G L +L Sbjct: 42 ILVAGQHIPSGTSGAEIRARGLTERLLVPTVTVPAGALTTWDSALDPLRLGGDLQPRQLL 101 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKR--AATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G +P +R A ++ ++++ V G I P D V V Sbjct: 102 MRTLFVPASPAPSHTG----RIPVPRRSLAVSVALNVAPQVAGNITPGDQVAVYYTYQAK 157 Query: 162 -------ERKPTVTVVLSNIRVIAIDHNIDSDE------------------------RVL 190 E P ++L RVI I + + + + Sbjct: 158 VLMAEDHETIPMTELLLPKARVITIG-EAEPGQAPVTPSPSPTPGPSASAGDSTAAVKEI 216 Query: 191 VGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW 237 TL + A LV A L L L + W Sbjct: 217 QRYVVTLAVGDTDALRLVHAAQSGSLYLALLGPNATASTGPAIDTSW 263 >gi|319790433|ref|YP_004152066.1| flagella basal body P-ring formation protein FlgA [Thermovibrio ammonificans HB-1] gi|317114935|gb|ADU97425.1| flagella basal body P-ring formation protein FlgA [Thermovibrio ammonificans HB-1] Length = 321 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 8/98 (8%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A I LV+ V+ + + V+++ + G +TP +++ + P ++ Sbjct: 170 ARFIYQVLVNGKVVKKVWIPVRI-DRLEKVVVAAVLIPKGTKITPTMVKLASVPSRKAYN 228 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 F ++++E+ G + R IL G IR L Sbjct: 229 AF-------HSVKEVVGSIARTDILSGKIIRPTMLKPN 259 >gi|218290594|ref|ZP_03494696.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218239378|gb|EED06575.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 261 Score = 49.9 bits (118), Expect = 3e-04, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 62/176 (35%), Gaps = 31/176 (17%) Query: 7 MGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 M +V AL GI + + ++ E + V ++ + +T + Sbjct: 1 MAMVSKATMALGLCGIGVAVWL-------DWMVLERANATVQVPVAAQTIPPYTTITSSD 53 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLL 125 + W + P + + + G L + + GDPI +L +G+ + Sbjct: 54 ITWKSIPRNALPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGSLQAYAAS 104 Query: 126 PKGKRAATMDISISSA-VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 + +++S + + + P V +V+ VV ++ V+A + Sbjct: 105 QDD---VLVPVNVSPSPITEAVTPGATVTLVVNG----------VVYHDVLVVATN 147 >gi|327538081|gb|EGF24771.1| conserved hypothetical protein, secreted [Rhodopirellula baltica WH47] Length = 590 Score = 49.5 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 91/291 (31%), Gaps = 50/291 (17%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI---- 65 V + AL G LV T+E P + V I L + P Sbjct: 301 VSAVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDP 360 Query: 66 ----LEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + P E +I D + +L G + R + PI+ L+ G Sbjct: 361 ATAYVRTIQVPAETASQSNWITD------LSKLVGRIPRHDLPATVPIQEGDLMPVGTMA 414 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176 GLS P G+ +D H+D+V R+ E + +N+ + Sbjct: 415 GLSGATPPGRVLFFLDTEGLIGGDAFEF-GQHLDLVASRTADEPRGGSRGGFANVTLTDA 473 Query: 177 -------IAIDHNI--------------DSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 IA D + D + + + P Q L A +V Sbjct: 474 QRTSVEPIADDVIVMMPTRSPGNPTARKSKDSKDSPAPKLIVAVRPEQVAHLEYAVAVGS 533 Query: 216 -LSLVLRS--------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 L +RS +++ P+ + +D + K+ I G ++ Sbjct: 534 NLRATVRSGRVDSTELVSERQPAGRVTAMRFDPLADTKQTDIYVGGSSQSQ 584 Score = 36.0 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ G +V+ G +RG GL+ P G RA T++ + + V I Sbjct: 147 ATDIIGRVVKSDKSSGFAFAEANFFERGTPAGLAGATPPGMRAMTLEAAQLAGVH-RISM 205 Query: 149 NDHVDVV 155 + +D+V Sbjct: 206 GEQIDLV 212 >gi|315646608|ref|ZP_07899726.1| SAF domain protein [Paenibacillus vortex V453] gi|315278251|gb|EFU41571.1| SAF domain protein [Paenibacillus vortex V453] Length = 365 Score = 49.5 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 66/191 (34%), Gaps = 35/191 (18%) Query: 2 KLTRLMGIVVSGVF---ALVAGIIAMRLVSPHHVQTEEVIT-------------ENPAKF 45 + +L+ ++G AL AG + L Q EE + + Sbjct: 7 RSRKLIFAGLAGAAVTGALCAGTMIYYLHGYKEQQGEERMKYELRITELEETQLQQLNSM 66 Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 + D+ G + ++ V P E + + + +E+ G V++ +L+G Sbjct: 67 QVAWVPVRDIPPGHFIEAKDIKEVRLPYEGASNNLL------SVKEEIAGKGVKIELLQG 120 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 PI L + S L + ++ + ++ D VDV + + Sbjct: 121 TPITRTMLFEE-EPTPSDLRHREMKSVYLPSD--------LRQGDVVDVRVQFPTGQD-- 169 Query: 166 TVTVVLSNIRV 176 ++LS ++ Sbjct: 170 --YIILSKKKI 178 >gi|119025306|ref|YP_909151.1| hypothetical protein BAD_0288 [Bifidobacterium adolescentis ATCC 15703] gi|118764890|dbj|BAF39069.1| hypothetical protein [Bifidobacterium adolescentis ATCC 15703] Length = 266 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 15/113 (13%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 ++++ ++A G +T +E P + + + G++ + Sbjct: 75 RAAIATQPIVVAVRNVAKGTAITREDVELREAPSDGSLSNAFHT------LDDAVGLIAQ 128 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 V I D + G S ++P+G ++++ ++S GG+I P D V Sbjct: 129 VGIGAHDVLMS------GMARASPVVPQGH--TSIEVRLASVAGGLI-PGDKV 172 >gi|218289538|ref|ZP_03493766.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] gi|218240406|gb|EED07588.1| SAF domain protein [Alicyclobacillus acidocaldarius LAA1] Length = 235 Score = 49.1 bits (116), Expect = 6e-04, Method: Composition-based stats. Identities = 21/169 (12%), Positives = 48/169 (28%), Gaps = 22/169 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V G IA + +E V +++ + Sbjct: 1 MKSWVRYTLATTLFVVGVGGSIAYNQFVAPILTSEW-----------VYVARTQMPADTP 49 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + +E + P+ V I + L G P+ + + Sbjct: 50 IQATDVERIRVPKSEVSPDAITNAEG------LIGAYTAQPVDQNQVLTALDTEPDP--- 100 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169 + G + + ++V ++ D+VD++ + V Sbjct: 101 --FTITPGTEDVPIPSTWIASVSETLRQGDYVDLIPIAEPQAGSNNVGT 147 >gi|32477848|ref|NP_870842.1| hypothetical protein RB13066 [Rhodopirellula baltica SH 1] gi|32448405|emb|CAD77920.1| hypothetical protein-transmembrane prediction [Rhodopirellula baltica SH 1] Length = 590 Score = 49.1 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 92/291 (31%), Gaps = 50/291 (17%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI---- 65 V + AL G LV T+E P + V I L + P Sbjct: 301 VSAVTSALELGATVNVLVRSGRPDTDEPSNNVPEGMVAVPIPGQTLLAYQTIRPTSFEDP 360 Query: 66 ----LEWVAFPEENVF-DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN-G 119 + + P E +I D + +L G + R + PI+ L+ G Sbjct: 361 ATAYVRTIQVPAETASQSNWITD------LSKLVGRIPRHDLPATVPIQEGDLMPVGTMA 414 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV--- 176 GLS P G+ +D H+D+V R+ E + +N+ + Sbjct: 415 GLSGATPPGRVLFFLDTEGLIGGDAFEF-GQHLDLVASRTADEPRGGSRGGFANVTLTDA 473 Query: 177 -------IAIDHNI--------------DSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 IA D + D + + + + P Q L A +V Sbjct: 474 QRTSVEPIADDVIVMMPTRSPGNPTAGKSKDTKDSPSAKLIVAVRPEQVAHLEYAVAVGS 533 Query: 216 -LSLVLRS--------IADLNPSSSEDSDVWDVQEEGKEIQIIKAGVIVNK 257 L +RS +++ P+ + +D + K+ I G ++ Sbjct: 534 NLRATVRSGRVDSTDLVSERQPAGRVAAMRFDPLADTKQTDIYVGGSSQSQ 584 Score = 36.0 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 2/67 (2%) Query: 90 MQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKP 148 ++ G +V+ G +RG GL+ P G RA T++ + + V I Sbjct: 147 ATDIIGRVVKSDKSSGFAFAEANFFERGTPAGLAGATPPGMRAMTLEAAQLAGVH-RISM 205 Query: 149 NDHVDVV 155 + +D+V Sbjct: 206 GEQIDLV 212 >gi|120405786|ref|YP_955615.1| SAF domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958604|gb|ABM15609.1| SAF domain [Mycobacterium vanbaalenii PYR-1] Length = 217 Score = 49.1 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 66/167 (39%), Gaps = 24/167 (14%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 VV+G ++AG+ A R + A+ +V+++ DL+ G +T + Sbjct: 30 VVAGALVVLAGVAAWR-------------GDPQAEQSDVVVTLHDLSPGAEITAADVRVE 76 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 V +G DV + G + P +G+ + +L+ ++ Sbjct: 77 TRSASTVPEGAHSDV------DAVVGATLAGPTRRGEIVTDVRLLSSRLAESAA--GPDA 128 Query: 130 RAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 R + ++ + A+ +++ D VD+V ++ ++ ++ V Sbjct: 129 RIVPIPLADA-ALTDLVRAGDVVDIVA--GPADEAGAARLIATDAVV 172 >gi|297572143|ref|YP_003697917.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296932490|gb|ADH93298.1| SAF domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 203 Score = 48.7 bits (115), Expect = 7e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 59/177 (33%), Gaps = 22/177 (12%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 FA + + A LVS +++ DL G ++ + L + P Sbjct: 7 IGFAALVAVFAQSLVSALDSSAPARYRA--------VVAATDLPAGHQLSDSDLSVLPLP 58 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + + + + ++ G + V + KG I ++ +S G A Sbjct: 59 TQ-LPGSTV-------NVTDVSGHHLLVSVPKGALISTHHVLSPQTLEQAS---PGYVIA 107 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVR--SLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 + ++ + + +I +VD+ SL ++ +IRV + Sbjct: 108 PVLLADTGGLS-LIHTGSYVDLFKPGKESLDGSSSEAELIAHHIRVAGVAKTAGEKN 163 >gi|296169796|ref|ZP_06851411.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895590|gb|EFG75289.1| SAF domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 225 Score = 48.7 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 37/217 (17%), Positives = 83/217 (38%), Gaps = 28/217 (12%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 V +G ++AG+ A+R + +V+++ DL G +TP + Sbjct: 30 VAAGGLVVLAGLAALR-------------ANPAGDYADVVVADHDLRPGAALTPADVRLE 76 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPK 127 + DG + DV + + P +G+ + +L+ + ++ Sbjct: 77 KRLATTLPDGALADVS------AVANSTLTGPARRGEVLTDVRLLGSRLADAAIALKAGP 130 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSNIRVIAIDHNID 184 G R + ++ SA+ +++ D VDV+ + + VV ++ V+ + + Sbjct: 131 GARLVPLRLAD-SALIELVRVGDVVDVLAAPAAGTPGTPQAVPRVVATDAVVVLV--SAK 187 Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAK-LSLVL 220 + G L P + VA ++ + ++L L Sbjct: 188 PKAQAADGDRVVLVALPARVANTVAGSALGQAVTLTL 224 >gi|41407019|ref|NP_959855.1| hypothetical protein MAP0921c [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395370|gb|AAS03238.1| hypothetical protein MAP_0921c [Mycobacterium avium subsp. paratuberculosis K-10] Length = 226 Score = 48.7 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 19/191 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + V++++ DL G +T + V +G P + + G Sbjct: 46 RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99 Query: 98 VRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P +G+ + +L+ + S G R + + A+ +++P D VDV+ Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLHPAD-GALIDLVRPGDVVDVL 158 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAA 210 + + + +V+A D + + L P VA Sbjct: 159 ----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAAGADRVVLVALPAGVANTVAG 214 Query: 211 QSVA-KLSLVL 220 ++ ++L L Sbjct: 215 AALGQTVTLTL 225 >gi|254773979|ref|ZP_05215495.1| hypothetical protein MaviaA2_04794 [Mycobacterium avium subsp. avium ATCC 25291] Length = 226 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 67/191 (35%), Gaps = 19/191 (9%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + V++++ DL G +T + V +G P + + G Sbjct: 46 RSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVPEG------SPAEIGAVLGST 99 Query: 98 VRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + P +G+ + +L+ + S G R + + A+ +++P D VDV+ Sbjct: 100 LAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLHPAD-GALIDLVRPGDVVDVL 158 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVLVGSTATLELTPMQAKALVAA 210 + + + +V+A D + + L P VA Sbjct: 159 ----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAAGADRVVLVALPAGVANTVAG 214 Query: 211 QSVA-KLSLVL 220 ++ ++L L Sbjct: 215 AALGQTVTLTL 225 >gi|254478253|ref|ZP_05091634.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] gi|214035849|gb|EEB76542.1| SAF domain family protein [Carboxydibrachium pacificum DSM 12653] Length = 181 Score = 48.7 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 18/140 (12%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 +N K V+I + D+ G V++ + ++ + P V + + ++ G +V+ Sbjct: 24 QNIQKTEKVVIVEKDIPAGTVISEDAVKVIDVPASVVNPDY------ARSPADVVGKVVK 77 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 ++GD I +E L + S L T+ I+ ++ D V V+ Sbjct: 78 EGRVRGDFIPVEILTSKD----SQPLGPDHAVMTVPITSVE--AKTLQSGDTVSFVVFDQ 131 Query: 160 LSERKPTVTVVLSNIRVIAI 179 R +L +VI++ Sbjct: 132 TGSR------ILDGFKVISV 145 >gi|253576735|ref|ZP_04854062.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843945|gb|EES71966.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 318 Score = 48.7 bits (115), Expect = 0.001, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 46/127 (36%), Gaps = 18/127 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMR----------LVSPHHVQTEEVITENPAKFINVLI 50 M L+ L+G+V +G AL G +R L+ + Q + + + + + Sbjct: 11 MLLSGLVGVVAAG--ALFTGYTFVRERHVHAERKALIQDYEAQLASLRDQAQQRTVQGWV 68 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 D+ G + + L+ V P +V + + + G ++ + P+ Sbjct: 69 PTRDIPAGNRIAASDLKRVELPANSVPADLFK------SQEAIAGKYAKIALRSMTPLTE 122 Query: 111 EKLVDRG 117 + + Sbjct: 123 ALVYEEA 129 >gi|291457156|ref|ZP_06596546.1| putative flagella basal body P-ring formation protein FlgA [Bifidobacterium breve DSM 20213] gi|291380991|gb|EFE88509.1| putative flagella basal body P-ring formation protein FlgA [Bifidobacterium breve DSM 20213] Length = 188 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 64/181 (35%), Gaps = 19/181 (10%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V+I+ +A G +++ + P V + D E+ G++ ++ Sbjct: 27 AQVQTAPVVIADRPIARGEIISSADIRVELLPVSTVGSSYATDA------DEITGLIAQI 80 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I DPI D + L P G + + ++ + P D+V +V Sbjct: 81 DIAVNDPISTHMARD------APLPPTGTTVIEVRL---ASNPDDLLPGDNVQLVSAVGC 131 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 + V+ V+AI ++ + + P A A++ Q + V+ Sbjct: 132 AGEDC---VLAEEALVMAIG-EAEASSLGSNERQVSFAMKPHAAAAVMELQQAGAIVAVM 187 Query: 221 R 221 R Sbjct: 188 R 188 >gi|228982964|ref|ZP_04143223.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407] gi|228777147|gb|EEM25455.1| hypothetical protein bthur0002_60970 [Bacillus thuringiensis Bt407] Length = 292 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 71/204 (34%), Gaps = 35/204 (17%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + ++K D+ V ++ V + + G++ D+ Q + G ++ Sbjct: 47 QQEKVGTTIYVAKEDIQAKTEVNESMFTPVHIAKGGLLKGYVTDISQ------IKGAQLK 100 Query: 100 VPILKGDPIRLEKLVDRGNGG--------LSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 +LKG+PI ++L + S +P K A + + Sbjct: 101 GGLLKGEPIATQRLESKKENTDEKLKIKIQSEFMPDIKNADNVKV--------F------ 146 Query: 152 VDVVMVRSLSERKPTVTVVLS-NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 V++ SE+ T+ S I V A + L+LT + K A Sbjct: 147 --VLLTNKHSEQSEVQTLFASKKIEVSAQAPEATQPSKQEYY----LQLTEDEVKQYYDA 200 Query: 211 QSVAKLSLVLRSIADLNPSSSEDS 234 QS K+ + D + SSE Sbjct: 201 QSKGKIIISKMMSLDTSEISSEGG 224 >gi|149188864|ref|ZP_01867154.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1] gi|148837284|gb|EDL54231.1| hypothetical protein VSAK1_05925 [Vibrio shilonii AK1] Length = 148 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 23/135 (17%), Positives = 52/135 (38%), Gaps = 23/135 (17%) Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSE------------RKPTVTVVLSNIRVIAIDH 181 +++S + + I+P +DV+ V S ++ R ++ L +++V+ + Sbjct: 6 LEVSDKNLINDYIRPGSFIDVLTVSSPNDNLAGNVDKPKRFRGVKASMFLKHVKVLNVGD 65 Query: 182 NIDSDERVLVGS---------TATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSE 232 + D + T +E+ P L AQ + + RS P +E Sbjct: 66 D-KGDNSSVTARSPTKENGLTTVVIEVKPDDLAKLALAQRTMHIE-IYRSQTYKQPEYAE 123 Query: 233 DSDVWDVQEEGKEIQ 247 ++ D +E++ Sbjct: 124 VRNIIDNYTGIEELR 138 >gi|187478181|ref|YP_786205.1| flagellar basal body P-ring biosynthesis protein FlgA [Bordetella avium 197N] gi|115422767|emb|CAJ49295.1| flagella basal body P-ring formation protein [Bordetella avium 197N] Length = 249 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 48/128 (37%), Gaps = 26/128 (20%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ + G +T L+ N+ G + D + G+ R I G PI Sbjct: 128 YVASRQIPAGQAITSEDLDSREGDLMNLPPGAMTDARS------IVGMQARHRINIGQPI 181 Query: 109 RLE--------------KLVDRGNGGLSS----LLPKGKRAATMDISISSA--VGGMIKP 148 R +++ RGNG + S L G AT+ + S V G+++P Sbjct: 182 RGSALRDAASISRGQNVRIIARGNGFVVSSEGQALEDGAPGATIQVRTQSGQVVSGVLQP 241 Query: 149 NDHVDVVM 156 V++ + Sbjct: 242 GGQVELQL 249 >gi|108801257|ref|YP_641454.1| hypothetical protein Mmcs_4293 [Mycobacterium sp. MCS] gi|119870408|ref|YP_940360.1| SAF domain-containing protein [Mycobacterium sp. KMS] gi|108771676|gb|ABG10398.1| conserved hypothetical protein [Mycobacterium sp. MCS] gi|119696497|gb|ABL93570.1| SAF domain [Mycobacterium sp. KMS] Length = 218 Score = 48.4 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 48/124 (38%), Gaps = 9/124 (7%) Query: 32 VQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQ 91 V ++ ++V+++ DL G + + + P V DG D Sbjct: 38 AAVAAVRSDPDGDQVDVVVAATDLTPGTELAESDVRVERRPLTTVPDGAAVDP------T 91 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 + G V P +G+ + +L+ ++ R ++ ++ + V +++ D Sbjct: 92 AVIGATVAGPTRRGEVLTDVRLLGPRIAEAAA--GPDARIVSLQLADGALVD-LVRTGDV 148 Query: 152 VDVV 155 VDV+ Sbjct: 149 VDVL 152 >gi|187251720|ref|YP_001876202.1| SAF domain-containing protein [Elusimicrobium minutum Pei191] gi|186971880|gb|ACC98865.1| SAF domain protein [Elusimicrobium minutum Pei191] Length = 215 Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 57/139 (41%), Gaps = 10/139 (7%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 ++ I V ++ D+ V+T + A P D F + + ++G + V I Sbjct: 19 SEPIKVFVALHDIPALSVITGQDIAT-AVPAIAERDAFFSEQD----IALIEGAVALVNI 73 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPND--HVDVVM--VR 158 KG I+ L + SS L KG + + I +A + VD+++ R Sbjct: 74 PKGTQIKKNSLKLKDKKPSSSELNKGWGYYILPVDIQTADMVLSNGGSRERVDLIVRTYR 133 Query: 159 SLSE-RKPTVTVVLSNIRV 176 + + +P V +L NI V Sbjct: 134 EIGDLNEPVVFTLLQNIEV 152 >gi|84385705|ref|ZP_00988736.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01] gi|84379685|gb|EAP96537.1| hypothetical protein V12B01_26264 [Vibrio splendidus 12B01] Length = 251 Score = 48.0 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 50/224 (22%), Positives = 84/224 (37%), Gaps = 19/224 (8%) Query: 10 VVSGVFALVAGIIAMRLVSPHHV-QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 V +F ++ +A VS + + Q E V+ E + ++V D+ VV +L+ Sbjct: 4 AVLFLFIAISLFLAFFYVSENFLSQEEVVVEEEKIRMVDVAFLNNDVVKASVVKQQLLDI 63 Query: 69 VAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL-LP 126 + PE V G+I G L + G + + + G+ L L Sbjct: 64 QSLPETTVKARGYIPYTDVNIQA----GALWSNDVEAGQVLNADYFSNPGDKDYMYLSLS 119 Query: 127 KGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSER----------KPTVTVVLSNIR 175 K + S SS V + I+P D V V S T V++ R Sbjct: 120 KNEVPYYYTSSGSSIVEALPIQPQDRVSFVATTSSESNLLEDGYSDINNLTSNVIIDGAR 179 Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V+ + + + D+ S + LT Q L AQ + ++LV Sbjct: 180 VLQVVESNNEDDEDKEHSLI-IALTVKQVLKLEMAQKIGAITLV 222 >gi|118465730|ref|YP_880352.1| hypothetical protein MAV_1099 [Mycobacterium avium 104] gi|118167017|gb|ABK67914.1| conserved hypothetical protein [Mycobacterium avium 104] Length = 226 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 75/211 (35%), Gaps = 22/211 (10%) Query: 21 IIAMRLVSPHHV---QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 ++A R+ + V + ++ + V++++ DL G +T + V Sbjct: 26 VLARRIAAGTLVVLAAIAALRSDPAGDYAPVVVAEHDLRPGAALTAADVRLEKRLAATVP 85 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMD 135 +G P + + G + P +G+ + +L+ + S G R + Sbjct: 86 EG------SPAEIGAVLGSTLAGPARRGEVLTDVRLLGSRLAEAAVGSKAAAGARIVPLH 139 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH-----NIDSDERVL 190 + A+ +++P D VDV+ + + + +V+A D + + Sbjct: 140 PAD-GALIDLVRPGDVVDVL----AAPANTSAETTHAAPKVLATDAVVVLVSAREKIQAA 194 Query: 191 VGSTATLELTPMQAKALVAAQSVA-KLSLVL 220 L P VA ++ ++L L Sbjct: 195 GADRVVLVALPAGVANTVAGAALGQTVTLTL 225 >gi|148822199|ref|YP_001286953.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11] gi|218752660|ref|ZP_03531456.1| hypothetical protein MtubG1_04075 [Mycobacterium tuberculosis GM 1503] gi|253799982|ref|YP_003032983.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN 1435] gi|254549974|ref|ZP_05140421.1| hypothetical protein Mtube_05853 [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289555228|ref|ZP_06444438.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN 605] gi|289761124|ref|ZP_06520502.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM 1503] gi|297633515|ref|ZP_06951295.1| hypothetical protein MtubK4_05303 [Mycobacterium tuberculosis KZN 4207] gi|297730500|ref|ZP_06959618.1| hypothetical protein MtubKR_05383 [Mycobacterium tuberculosis KZN R506] gi|313657829|ref|ZP_07814709.1| hypothetical protein MtubKV_05383 [Mycobacterium tuberculosis KZN V2475] gi|148720726|gb|ABR05351.1| hypothetical protein TBFG_11008 [Mycobacterium tuberculosis F11] gi|253321485|gb|ACT26088.1| hypothetical protein TBMG_02999 [Mycobacterium tuberculosis KZN 1435] gi|289439860|gb|EFD22353.1| hypothetical protein TBXG_02978 [Mycobacterium tuberculosis KZN 605] gi|289708630|gb|EFD72646.1| hypothetical protein TBIG_02544 [Mycobacterium tuberculosis GM 1503] gi|328459724|gb|AEB05147.1| hypothetical protein TBSG_03018 [Mycobacterium tuberculosis KZN 4207] Length = 218 Score = 48.0 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 15/164 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ DL G +TP + + DG D + + G + P +G+ Sbjct: 55 EVVVAAQDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAVVGSTLASPTRRGE 108 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + +L+ G+ S R + ++ S+ V +++ D VDV + +++ Sbjct: 109 VLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAA 164 Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205 + ++ ++ V+ + DSD VLV A L T A Sbjct: 165 LRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208 >gi|307265038|ref|ZP_07546599.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306920023|gb|EFN50236.1| SAF domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 181 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 64/173 (36%), Gaps = 28/173 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M ++ A A LV ++Q E V++ + D+ G V++ + + Sbjct: 1 MSRIIKIALITAAVSAAFMLVFMQNIQKTE----------KVVVVEKDIPAGTVISEDAV 50 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + P V + + ++ G +V+ +KGD I +E L + LS Sbjct: 51 KVIDVPASVVNPSY------ARSPADVVGKVVKDGRVKGDFIPVEILTSKDAQPLS---- 100 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + T+ ++ ++ V ++ + V+ +VI++ Sbjct: 101 PDRAVMTVPVTSVE--AKTLQSGSTVSFIVFDQTGSK------VIEGFKVISV 145 >gi|260204206|ref|ZP_05771697.1| hypothetical protein MtubK8_07852 [Mycobacterium tuberculosis K85] gi|289573628|ref|ZP_06453855.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] gi|289538059|gb|EFD42637.1| conserved hypothetical protein [Mycobacterium tuberculosis K85] Length = 218 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 69/177 (38%), Gaps = 15/177 (8%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + V+++ DL G V+TP + + DG D + + Sbjct: 42 VAALRSNPEDDRAEVVVAAHDLRPGTVLTPGDVRLEKRSATTLPDGSQAD------LDAV 95 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + P +G+ + +L+ G+ S R + ++ S+ V +++ D VD Sbjct: 96 VGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVD 152 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205 V + +++ + ++ ++ V+ + DSD VLV A L T A Sbjct: 153 V-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208 >gi|323702231|ref|ZP_08113897.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM 574] gi|323532721|gb|EGB22594.1| SAF domain-containing protein [Desulfotomaculum nigrificans DSM 574] Length = 212 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 23/161 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 ++R GI+ + V A+V + + + K V + + G + Sbjct: 1 MSRKWGIITALVIAIVFTTLVGVSSNHKYAAA--------TKPTKVYQAAKFIPQGTTIK 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 + ++ V FP E++ I D +E+ G V +LK I + Sbjct: 53 ESDIKEVDFP-ESLSSNLIKD------KKEIVGKGAVVSMLKDQKIYKGSVSPGAGK--- 102 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G + +S + + P ++V+++ V + Sbjct: 103 ---RPGFVEILIPTDLSKSA--LALPGEYVNLIPVDDSGTQ 138 >gi|257068486|ref|YP_003154741.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] gi|256559304|gb|ACU85151.1| SAF domain-containing protein [Brachybacterium faecium DSM 4810] Length = 211 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 46/125 (36%), Gaps = 12/125 (9%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 + + ++++ +L G ++ L E + +G ++++ G R+PI Sbjct: 45 RGVEIVVADAELTPGTALSRADLRTARIAPELLPEGA------AQQIEDVVGQTARLPIE 98 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G P+ L D + LP G + + + ++P + +++ Sbjct: 99 PGTPLLPGLLEDPA----APALPSGSALMAVPVPRALVAH--LQPGTELMLLVTDPSQPS 152 Query: 164 KPTVT 168 V+ Sbjct: 153 GIAVS 157 >gi|262201376|ref|YP_003272584.1| SAF domain-containing protein [Gordonia bronchialis DSM 43247] gi|262084723|gb|ACY20691.1| SAF domain protein [Gordonia bronchialis DSM 43247] Length = 220 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 22/122 (18%), Positives = 45/122 (36%), Gaps = 20/122 (16%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + VL++ +L G +T + V P + DG + + E G V Sbjct: 53 QRTTGEQPVLVAVHELRPGQPLTAEDVTVVRVPSSLMPDGAL------VSPAEGLGRTVA 106 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGK------RAATMDISISSAVGGMIKPNDHVD 153 + G+ + +L L++ LP R + ++ + +++ D VD Sbjct: 107 GRVRVGELVTDARL-------LTAHLPADLTGLDDARLVPVHLADETLTS-LLRSGDVVD 158 Query: 154 VV 155 V+ Sbjct: 159 VL 160 >gi|15608130|ref|NP_215505.1| hypothetical protein Rv0990c [Mycobacterium tuberculosis H37Rv] gi|15840415|ref|NP_335452.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551] gi|148660771|ref|YP_001282294.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra] gi|167968056|ref|ZP_02550333.1| hypothetical protein MtubH3_08483 [Mycobacterium tuberculosis H37Ra] gi|254231287|ref|ZP_04924614.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C] gi|254363908|ref|ZP_04979954.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str. Haarlem] gi|306775124|ref|ZP_07413461.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis SUMu001] gi|306781961|ref|ZP_07420298.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis SUMu002] gi|306783684|ref|ZP_07422006.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis SUMu003] gi|306788039|ref|ZP_07426361.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis SUMu004] gi|306792372|ref|ZP_07430674.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis SUMu005] gi|306796774|ref|ZP_07435076.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis SUMu006] gi|306802661|ref|ZP_07439329.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis SUMu008] gi|306806841|ref|ZP_07443509.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis SUMu007] gi|306967040|ref|ZP_07479701.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis SUMu009] gi|306971230|ref|ZP_07483891.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis SUMu010] gi|307078960|ref|ZP_07488130.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis SUMu011] gi|307083518|ref|ZP_07492631.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis SUMu012] gi|2052124|emb|CAB08150.1| HYPOTHETICAL PROTEIN Rv0990c [Mycobacterium tuberculosis H37Rv] gi|13880585|gb|AAK45266.1| hypothetical protein MT1019 [Mycobacterium tuberculosis CDC1551] gi|124600346|gb|EAY59356.1| hypothetical protein TBCG_00979 [Mycobacterium tuberculosis C] gi|134149422|gb|EBA41467.1| hypothetical protein TBHG_00974 [Mycobacterium tuberculosis str. Haarlem] gi|148504923|gb|ABQ72732.1| hypothetical protein MRA_0997 [Mycobacterium tuberculosis H37Ra] gi|308216331|gb|EFO75730.1| hypothetical protein TMAG_00929 [Mycobacterium tuberculosis SUMu001] gi|308325350|gb|EFP14201.1| hypothetical protein TMBG_01621 [Mycobacterium tuberculosis SUMu002] gi|308331529|gb|EFP20380.1| hypothetical protein TMCG_00603 [Mycobacterium tuberculosis SUMu003] gi|308335333|gb|EFP24184.1| hypothetical protein TMDG_03597 [Mycobacterium tuberculosis SUMu004] gi|308339140|gb|EFP27991.1| hypothetical protein TMEG_00874 [Mycobacterium tuberculosis SUMu005] gi|308342811|gb|EFP31662.1| hypothetical protein TMFG_02809 [Mycobacterium tuberculosis SUMu006] gi|308346664|gb|EFP35515.1| hypothetical protein TMGG_03063 [Mycobacterium tuberculosis SUMu007] gi|308350579|gb|EFP39430.1| hypothetical protein TMHG_00166 [Mycobacterium tuberculosis SUMu008] gi|308355270|gb|EFP44121.1| hypothetical protein TMIG_03552 [Mycobacterium tuberculosis SUMu009] gi|308359224|gb|EFP48075.1| hypothetical protein TMJG_02659 [Mycobacterium tuberculosis SUMu010] gi|308363136|gb|EFP51987.1| hypothetical protein TMKG_01481 [Mycobacterium tuberculosis SUMu011] gi|308366793|gb|EFP55644.1| hypothetical protein TMLG_01695 [Mycobacterium tuberculosis SUMu012] gi|323720557|gb|EGB29638.1| hypothetical protein TMMG_02985 [Mycobacterium tuberculosis CDC1551A] Length = 218 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/164 (20%), Positives = 66/164 (40%), Gaps = 15/164 (9%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ DL G +TP + + DG D + + G + P +G+ Sbjct: 55 EVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAVVGSTLASPTRRGE 108 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + +L+ G+ S R + ++ S+ V +++ D VDV + +++ Sbjct: 109 VLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAA 164 Query: 167 VTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205 + ++ ++ V+ + DSD VLV A L T A Sbjct: 165 LRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208 >gi|215429850|ref|ZP_03427769.1| hypothetical protein MtubE_04012 [Mycobacterium tuberculosis EAS054] gi|289753048|ref|ZP_06512426.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] gi|289693635|gb|EFD61064.1| conserved hypothetical protein [Mycobacterium tuberculosis EAS054] Length = 218 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 37/199 (18%), Positives = 76/199 (38%), Gaps = 28/199 (14%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + ++AG+ A+R + V+++ DL G +TP + Sbjct: 33 AAGLVILAGVAALR-------------SNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKR 79 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRA 131 + DG D + + G + P +G+ + +L+ G+ S R Sbjct: 80 SATTLPDGSQAD------LDAVVGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARI 131 Query: 132 ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSD 186 + ++ S+ V +++ D VDV + +++ + ++ ++ V+ + DSD Sbjct: 132 VPLHLADSALVD-LVRVGDVVDV-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSD 189 Query: 187 ERVLVGSTATLELTPMQAK 205 VLV A L T A Sbjct: 190 RVVLVALPARLANTVAGAA 208 >gi|31792181|ref|NP_854674.1| hypothetical protein Mb1017c [Mycobacterium bovis AF2122/97] gi|121636917|ref|YP_977140.1| hypothetical protein BCG_1045c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215402806|ref|ZP_03414987.1| hypothetical protein Mtub0_03760 [Mycobacterium tuberculosis 02_1987] gi|215410589|ref|ZP_03419397.1| hypothetical protein Mtub9_04524 [Mycobacterium tuberculosis 94_M4241A] gi|215426268|ref|ZP_03424187.1| hypothetical protein MtubT9_07731 [Mycobacterium tuberculosis T92] gi|215445138|ref|ZP_03431890.1| hypothetical protein MtubT_04052 [Mycobacterium tuberculosis T85] gi|224989389|ref|YP_002644076.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo 172] gi|260185899|ref|ZP_05763373.1| hypothetical protein MtubCP_07697 [Mycobacterium tuberculosis CPHL_A] gi|260200017|ref|ZP_05767508.1| hypothetical protein MtubT4_07787 [Mycobacterium tuberculosis T46] gi|289442410|ref|ZP_06432154.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46] gi|289446571|ref|ZP_06436315.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289744726|ref|ZP_06504104.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289749518|ref|ZP_06508896.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92] gi|289757073|ref|ZP_06516451.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|294995178|ref|ZP_06800869.1| hypothetical protein Mtub2_11847 [Mycobacterium tuberculosis 210] gi|298524484|ref|ZP_07011893.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis 94_M4241A] gi|31617769|emb|CAD93878.1| HYPOTHETICAL PROTEIN Mb1017c [Mycobacterium bovis AF2122/97] gi|121492564|emb|CAL71032.1| Hypothetical protein BCG_1045c [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224772502|dbj|BAH25308.1| hypothetical protein JTY_1017 [Mycobacterium bovis BCG str. Tokyo 172] gi|289415329|gb|EFD12569.1| hypothetical protein TBLG_03153 [Mycobacterium tuberculosis T46] gi|289419529|gb|EFD16730.1| conserved hypothetical protein [Mycobacterium tuberculosis CPHL_A] gi|289685254|gb|EFD52742.1| conserved hypothetical protein [Mycobacterium tuberculosis 02_1987] gi|289690105|gb|EFD57534.1| hypothetical protein TBDG_01743 [Mycobacterium tuberculosis T92] gi|289712637|gb|EFD76649.1| conserved hypothetical protein [Mycobacterium tuberculosis T85] gi|298494278|gb|EFI29572.1| hypothetical protein TBAG_03051 [Mycobacterium tuberculosis 94_M4241A] gi|326904784|gb|EGE51717.1| hypothetical protein TBPG_02700 [Mycobacterium tuberculosis W-148] Length = 218 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 68/177 (38%), Gaps = 15/177 (8%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + V+++ DL G +TP + + DG D + + Sbjct: 42 VAALRSNPEDDRAEVVVAAHDLRPGTALTPGDVRLEKRSATTLPDGSQAD------LDAV 95 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G + P +G+ + +L+ G+ S R + ++ S+ V +++ D VD Sbjct: 96 VGSTLASPTRRGEVLTDVRLL--GSRLAESTAGPDARIVPLHLADSALVD-LVRVGDVVD 152 Query: 154 VVMVRSLSERKPTVTVVLSNIRVIAI-----DHNIDSDERVLVGSTATLELTPMQAK 205 V + +++ + ++ ++ V+ + DSD VLV A L T A Sbjct: 153 V-LAAPVTDSPAALRLLATDAIVVLVSAQQKAQAADSDRVVLVALPARLANTVAGAA 208 >gi|257793127|ref|YP_003186525.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479819|gb|ACV60136.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 38/105 (36%), Gaps = 17/105 (16%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 L+ +A+ L + ++ E + + ++ + +TP+ + W P Sbjct: 10 GLGLLGVGVAVWL--------DWMVLERAHATVEIPVASQTILPYTTITPSDITWKPVPR 61 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 V + + G L + + GDPI +L +G+ Sbjct: 62 AAVPSDLVTNP---------VGRLTVLGVAAGDPIESSELAAQGS 97 >gi|328953564|ref|YP_004370898.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109] gi|328453888|gb|AEB09717.1| N-acetylneuraminate synthase [Desulfobacca acetoxidans DSM 11109] Length = 347 Score = 47.6 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+ G +TP +LE PE V ++D G + + P+ + I Sbjct: 293 LVANQDIPQGTKLTPEMLEGKR-PEPGVSPEYLDF---------FVGRVTKRPLKYNEAI 342 Query: 109 RLEKL 113 + + Sbjct: 343 SWDDI 347 >gi|296128692|ref|YP_003635942.1| SAF domain protein [Cellulomonas flavigena DSM 20109] gi|296020507|gb|ADG73743.1| SAF domain protein [Cellulomonas flavigena DSM 20109] Length = 235 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 21/171 (12%) Query: 52 KGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D+ G +T + L V P G A + G + V + P+ Sbjct: 74 AHDVPAGTALTAHDLVLVDVPVGTAPGGAFR------APDDALGQVPAVDLPARLPLTPS 127 Query: 112 KLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL 171 L D G P G + + AV ++ P H+D+V R V Sbjct: 128 VLADAQLAG-----PDGTVVVAVRLDD-PAVAALLAPGLHLDLVAARLEGGPG---ETVA 178 Query: 172 SNIRVIAIDHNIDSDER------VLVGSTATLELTPMQAKALVAAQSVAKL 216 V + V V + + +TP +A + A ++L Sbjct: 179 RRALVRSAPGVAPEGGGLLGAPAVDVAAPVLVAVTPQEAVRIAEASVSSRL 229 >gi|323343128|ref|ZP_08083359.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463192|gb|EFY08387.1| hypothetical protein HMPREF0357_11540 [Erysipelothrix rhusiopathiae ATCC 19414] Length = 213 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 81/193 (41%), Gaps = 19/193 (9%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 E++T +F V DL + + LE ++ PE+ + + I + + + G Sbjct: 7 EIMTRIRCRFEKVYRLNTDLTQREKIEDHHLEEISLPEKGINEFMIRN------KENVIG 60 Query: 96 VLVR--VPILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 V+ + KG + D G LL + + + S+ + G +++ D+ Sbjct: 61 RYVKLGHTVYKGQIVDRRDFEHFDDARGKPLLLLEPEEVLMSAEASMVNTGGNVLRAGDY 120 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKAL 207 V++ + + + +L +RV+ + H I++ ++ V S A P + +++ Sbjct: 121 VNLSVKLREFDGGSRIMPLLKGVRVVNVRDRDGHEIEAGKQPSVFSFA----IPQKIESI 176 Query: 208 VA-AQSVAKLSLV 219 + A + LS+V Sbjct: 177 IHKAIEIGDLSVV 189 >gi|227504186|ref|ZP_03934235.1| SAF domain protein [Corynebacterium striatum ATCC 6940] gi|227199230|gb|EEI79278.1| SAF domain protein [Corynebacterium striatum ATCC 6940] Length = 226 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 87/231 (37%), Gaps = 33/231 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + + L+ V++ V + AG+ A+ + ++ D+ G + Sbjct: 16 RRSLLVRRVLAAVLIIGAGLSALH---------------ARRELPQAVVFARDVPAGSTL 60 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR----G 117 L P + D +D +++L+G +V G+ + +L+ Sbjct: 61 QAEDLTLAPVPSHILPDSAVDT-----DLEKLEGRVVVAAAASGELVTDARLLSPELVDN 115 Query: 118 NGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSE----RKPTVTVVLS 172 S+L G+ + + + + + D V+V+ S S+ P +V+ + Sbjct: 116 LVNNSTLNTSGEESHMIPLKLAEPDILPHLHHGDTVNVIAGNSNSDLIGTTSPAGSVIAA 175 Query: 173 NIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSI 223 RV+A + D ++ ST L L QA A+ +A L++V+ Sbjct: 176 GGRVVATTSSRDGED----ASTLLLALPASQADAVASASLSQPLTVVIVGQ 222 >gi|261251282|ref|ZP_05943856.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] gi|260938155|gb|EEX94143.1| flp pilus assembly protein RcpC/CpaB [Vibrio orientalis CIP 102891] Length = 258 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 81/234 (34%), Gaps = 31/234 (13%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M T ++ +V +F++ I +S + E+VI P + VL+ G+ G + Sbjct: 1 MNRTIILVLVTLVIFSIFI-FINNTYLSSTGEEQEKVIKSEPK--VAVLVVSGEAKKGQI 57 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + +I + V D + + G L + + G+ I E + + G+ Sbjct: 58 IKSSIHKSELVNLSQVES---VDYTPKDEIHIEPGALFKRDLNPGELISQEDISNPGDRD 114 Query: 121 LSSL-LPKGKRAATMDISISSAVGGM-IKPNDHVDVVMVRSLSE----------RKPTVT 168 L + KG+ ++ V + + P D V V S Sbjct: 115 YMFLSVNKGELPYFYHVTGLGIVQTLSLYPGDKVSFVSTTSSETNLLEDGYGDVGGLVSR 174 Query: 169 VVLSNIRVIAI--------DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 V++S RV+ + + + + +V + L L AQ V Sbjct: 175 VIISGARVLQVIKGEEDEDAQDAEDKQYSIV-----VALRMRDVLKLEMAQKVG 223 >gi|296135677|ref|YP_003642919.1| flagella basal body P-ring formation protein FlgA [Thiomonas intermedia K12] gi|295795799|gb|ADG30589.1| flagella basal body P-ring formation protein FlgA [Thiomonas intermedia K12] Length = 242 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 27 VSPHHVQTEEVITENPA-----------KFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 +P+ QT EV P+ + V++ L G V+T L V Sbjct: 86 ANPYGAQTVEVRCTAPSVWSLYLPVRVDRPQGVVVVARALQAGHVLTAADLTTVERDAAR 145 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---NGGLSSLLPKGK 129 + G + D Q L G ++R + G P+ L G SL+ +G Sbjct: 146 LPPGAVTDA------QALVGQVLRYSVAAGQPLVQSMLTGPQLVHYGQSVSLIAQGM 196 >gi|209967011|ref|YP_002299926.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW] gi|209960477|gb|ACJ01114.1| N-acetylneuraminic acid synthase [Rhodospirillum centenum SW] Length = 365 Score = 47.2 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 11/104 (10%) Query: 24 MRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 R+ V+ E P K +++ DL G V+ L + A P + + Sbjct: 272 ARIALGDGVKRRYPSEEKPLYKMAKKIVAARDLPAGHVLAQEDLAFKA-PNDGLP----- 325 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 P L G+ + P+ + + I L +++P Sbjct: 326 ----PYHADHLVGMRLTRPLAEDEAIGYADLTSEDAPASPAVVP 365 >gi|146297616|ref|YP_001181387.1| SAF domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145411192|gb|ABP68196.1| SAF domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 219 Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 54/141 (38%), Gaps = 17/141 (12%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLV 98 +N F N++++ D+ G +T + L V + E+ V Sbjct: 33 KKNQGLFENIIVASMDIKKGEKITQDKLALVRV-------AAPTPIPAAKNPVEVLNKYV 85 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 I +G+PI KL + +S KG+ + + I + I D V ++ V Sbjct: 86 LYDIKRGEPIIPAKLTVKPPIDVS----KGQYSMLIKIEPVPST--FIAKYDTVRLMFVS 139 Query: 159 ---SLSERKPTVTVVLSNIRV 176 +KP++ +L ++V Sbjct: 140 NAVDAKTQKPSIQ-ILDTVQV 159 >gi|134298813|ref|YP_001112309.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051513|gb|ABO49484.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 215 Score = 47.2 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 37/226 (16%), Positives = 82/226 (36%), Gaps = 38/226 (16%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILE 67 GI++S + +LV + + + K + V + G +T + ++ Sbjct: 6 GIIISLILSLVFTGAVIFSSNTKYAAA--------TKTVEVAAVNQYIPAGKKITKDDIK 57 Query: 68 WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPK 127 PE+ ++ ++ G + V ++K I +K + +G + Sbjct: 58 MDRVPEKMA-------INLVQKADDVVGKTILVSLVKDQYI-WKKAIAQGEAK-----KE 104 Query: 128 GKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI-AIDH---NI 183 G + + S+ + + VD+ +V S + ++ RV+ ++D I Sbjct: 105 GYIQVFIPTDLPSSAC--VIAGEVVDIYLV-SKGGIESNSGLIYKGARVLNSLDQSGNEI 161 Query: 184 DSDERVLVGS----------TATLELTPMQAKALVAAQSVAKLSLV 219 D + V T +E+ + A +V A S ++ LV Sbjct: 162 DPARKNEVSQMAVNGSKVPVTVGVEVPEIVAPVIVQACSKKEIYLV 207 >gi|28900575|ref|NP_800230.1| hypothetical protein VPA0720 [Vibrio parahaemolyticus RIMD 2210633] gi|260365455|ref|ZP_05777992.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|260877520|ref|ZP_05889875.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|260897539|ref|ZP_05906035.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|260901741|ref|ZP_05910136.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|28808955|dbj|BAC62063.1| hypothetical protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087131|gb|EFO36826.1| conserved hypothetical protein [Vibrio parahaemolyticus Peru-466] gi|308090892|gb|EFO40587.1| conserved hypothetical protein [Vibrio parahaemolyticus AN-5034] gi|308108967|gb|EFO46507.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ4037] gi|308114362|gb|EFO51902.1| conserved hypothetical protein [Vibrio parahaemolyticus K5030] gi|328470517|gb|EGF41428.1| pilus assembly protein CpaB [Vibrio parahaemolyticus 10329] Length = 250 Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 42/238 (17%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + VF + +A VS Q E V F+ V + V + + Sbjct: 1 MSRALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAI 60 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + F E +++ G L + +G + + + G L Sbjct: 61 DIREFSESEAKQHSYT---PYTSIKIESGALWAKDVTEGTQLTSNLVSNPGEKDYMYL-- 115 Query: 127 KGKRAATMDISIS---------SAVGGM-IKPNDHVDVVMVRSLSER----------KPT 166 ++ S V + I+P D V V S T Sbjct: 116 ------SLKKDQVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLT 169 Query: 167 VTVVLSNIRVI-AI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++ V+ A+ D + + D +++ T Q L AQ + ++LV Sbjct: 170 SNVIIDGALVLQAMNVSEDDSSNEDYGLIIALTV------KQVLKLEMAQKIGAITLV 221 >gi|253577450|ref|ZP_04854765.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] gi|251843150|gb|EES71183.1| SAF domain-containing protein [Paenibacillus sp. oral taxon 786 str. D14] Length = 377 Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 17/128 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMR-----------LVSPHHVQTEEVITENPAKFINVLI 50 K ++ I S V LV+ I ++ + + + Q E++ T +L+ Sbjct: 9 KPIVIIAIGFSFVLLLVSTIFVLQHQAQQKRLQQQMRAHYEQQIEQLKTNEQQGKTRILV 68 Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + + G + ++ V V D + G + ++ + P+ Sbjct: 69 AARPIPAGKTLGNGDIQAVEVVHALVPSDSFKDPQM------VVGKIAKIDLQSNTPLIA 122 Query: 111 EKLVDRGN 118 L + G Sbjct: 123 SMLYEEGA 130 >gi|126437236|ref|YP_001072927.1| SAF domain-containing protein [Mycobacterium sp. JLS] gi|126237036|gb|ABO00437.1| SAF domain [Mycobacterium sp. JLS] Length = 218 Score = 46.8 bits (110), Expect = 0.003, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 49/118 (41%), Gaps = 9/118 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ ++V+++ DL GM + + + P V DG D + G+ Sbjct: 44 RSDPDGDQVDVVVAATDLTPGMDLAESDVRVERRPLTTVPDGAAKDP------TAVIGMT 97 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 V P +G+ + +L+ ++ R ++ ++ + V +++ D VDV+ Sbjct: 98 VAGPTRRGEVLTDLRLLGPRIAEAAA--GPDARIVSLQLADGALVD-LVRTGDVVDVL 152 >gi|218886984|ref|YP_002436305.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757938|gb|ACL08837.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 354 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 +V P + E L++ +A G V+T + L W P V Sbjct: 276 MVGPFTISALESEAPARRNARRSLVAARPIAAGAVITRDDLTWKR-PAHGVS-------- 326 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKL 113 P + + G R I + ++ L Sbjct: 327 -PREIDAVLGKRARADIAEDTVLQWSHL 353 >gi|256824730|ref|YP_003148690.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] gi|256688123|gb|ACV05925.1| SAF domain-containing protein [Kytococcus sedentarius DSM 20547] Length = 219 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 28/161 (17%), Positives = 56/161 (34%), Gaps = 18/161 (11%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ DL G V+ L V E + +G P + + G +V P+ +G+ + Sbjct: 48 VAAADLPTGHVLGSEDLRPV---EGSSPEGVYLTGDDP--LADRAGQVVLRPVGQGEFLP 102 Query: 110 LEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV---RSLSERKPT 166 + L L R ++++S + P VD+ + +++PT Sbjct: 103 VADLGGADRLDL--------RRVSLEVSP--GSAATLSPGSVVDLWATPRAVAGEKKRPT 152 Query: 167 VTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKAL 207 VL+ V + D ++ Q + L Sbjct: 153 PRQVLAGAEVARVQEAGDRLAGGDQTVAVDFLVSTDQVEEL 193 >gi|153836372|ref|ZP_01989039.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] gi|149750274|gb|EDM61019.1| conserved hypothetical protein [Vibrio parahaemolyticus AQ3810] Length = 251 Score = 46.4 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 42/234 (17%), Positives = 69/234 (29%), Gaps = 33/234 (14%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + VF + +A VS Q E V F+ V + V + + Sbjct: 1 MSRALIFVFVAITMFLAFFYVSDFFDQPEPVAVVENEVFVQVAFVNRTVNKADPVNIDAI 60 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + F E N G L + +G + + + G L Sbjct: 61 DIREFSESEAKQHSYTPYTSINIES---GALWAKDVTEGTQLTSNLVSNPGEKDYMYL-- 115 Query: 127 KGKRAATMDISIS---------SAVGGM-IKPNDHVDVVMVRSLSER----------KPT 166 ++ S V + I+P D V V S T Sbjct: 116 ------SLKKDQVPYYYLSQGSSIVEALPIQPGDRVSFVATTSSQSNLLESGYSDIDSLT 169 Query: 167 VTVVLSNIRVI-AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 V++ V+ A++ + D D + LT Q L AQ + ++LV Sbjct: 170 SNVIIDGALVLQAMNVSEDDDSSNEDYGLI-IALTVKQVLKLEMAQKIGAITLV 222 >gi|258510599|ref|YP_003184033.1| SAF domain-containing protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477325|gb|ACV57644.1| SAF domain protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 261 Score = 46.0 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 ++ E + + ++ + +TP+ + W P V + + G Sbjct: 25 MVLERAHATVEIPVASQTILPYTTITPSDITWKQVPRAAVPSDLVTNP---------VGR 75 Query: 97 LVRVPILKGDPIRLEKLVDRGN 118 L + + GDPI +L +G+ Sbjct: 76 LTVLGVAAGDPIESSELAAQGS 97 >gi|159901123|ref|YP_001547370.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC 23779] gi|159894162|gb|ABX07242.1| hypothetical protein Haur_4611 [Herpetosiphon aurantiacus ATCC 23779] Length = 363 Score = 46.0 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 46/216 (21%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEE------VITENPAKFINVLISKGD 54 M+ +G++++ V + A ++ T P + +L + D Sbjct: 1 MRQNPALGMILAVVVLIAALAGGYVYLTNQQKSQTSGDPSLLEPTNMPVPNVQILEAATD 60 Query: 55 LAVGMVVTPNILEW----VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + ++T LE + P +V DDV + G + I G+ I+ Sbjct: 61 IEANKLITGADLEQYFNPLEVPPSDVTP---DDVLYTEFYSVVQGKVTTTDIRGGERIKK 117 Query: 111 EKLVDRGNGGLSSLLP------KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER- 163 N G++ LP + +A M +S GG++ +++D++ SL + Sbjct: 118 STF---RNAGIAEKLPIPVAGEESLKAYNMFVSDI---GGIVAEGNNIDILGSYSLEQPY 171 Query: 164 --------------------KPTVTVVLSNIRVIAI 179 + V+ N+ V+ + Sbjct: 172 LRFTGIDKDGIITLVDEKYLDISTHVLAQNVPVLKV 207 >gi|10956304|ref|NP_052753.1| hypothetical protein pxo1_57 [Bacillus anthracis] gi|4894273|gb|AAD32361.1| pXO1-57 [Bacillus anthracis] Length = 142 Score = 46.0 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVR--VPILKGDPIRLEKLVDRGNGGLSSLL- 125 P + + + +E+ G PI + + K+V + S++L Sbjct: 3 RTLPGDAIPPNALR-----ANKKEVVGKWTNDGQPITENSYLFKNKVVKKEELPDSAILN 57 Query: 126 -PKGKRAATMDISISSAVGGMIKPNDHVDVV---MVRSLSERKPTVTVVLSNIRVIA 178 G+ A + + ++ G I PN +VD+ +V+ K + +RV A Sbjct: 58 LKDGEVAFPLLVDSETSSGNSIIPNTYVDLYFKQVVKEGDNEKVVFGGLFQRVRVTA 114 >gi|254823442|ref|ZP_05228443.1| hypothetical protein MintA_26166 [Mycobacterium intracellulare ATCC 13950] Length = 216 Score = 46.0 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 15/186 (8%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V+++ DL G +T + V DG DV + G + Sbjct: 39 PAGDYTQVVVADHDLRPGNALTAADVRIEKRLASTVPDGARADV------GAVVGSTLAG 92 Query: 101 PILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV--- 155 P +G+ + +L+ + S G R + ++ A+ +++ D VDV+ Sbjct: 93 PARRGEVLTDVRLLGNRLAEAAIGSKAGPGARIVPLHLAD-GALIDLVRAGDVVDVLAAP 151 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA- 214 + VV ++ V+ + + + L P + VA ++ Sbjct: 152 ATGTPETAHAAPRVVATDAVVVLV--SAKEKLQSADADRVVLVALPARVANTVAGSALGQ 209 Query: 215 KLSLVL 220 ++L L Sbjct: 210 TVTLTL 215 >gi|309811232|ref|ZP_07705024.1| SAF domain protein [Dermacoccus sp. Ellin185] gi|308434844|gb|EFP58684.1| SAF domain protein [Dermacoccus sp. Ellin185] Length = 760 Score = 45.7 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 10/75 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+A G +T + + G QPN ++ L G +R PI GD Sbjct: 408 LVATRDIAAGEKLTRADVTIKS-------PG---RGLQPNRLEALVGRTMRRPIESGDFF 457 Query: 109 RLEKLVDRGNGGLSS 123 L D G + Sbjct: 458 YATDLTDAVAHGRAY 472 >gi|134298691|ref|YP_001112187.1| SAF domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051391|gb|ABO49362.1| SAF domain protein [Desulfotomaculum reducens MI-1] Length = 270 Score = 45.7 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 14/116 (12%) Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSA 141 D + +QE++G + ++ G+ IR +KL + LL G+ T+ I A Sbjct: 76 DPYAVKTLQEIEGKVAVTDLIPGEQIRPDKLANTD-----ILLQPGEAFVTVRIEKPEQA 130 Query: 142 VGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATL 197 + G I+ N V+V+ + +V+ RV+++ DE + TA++ Sbjct: 131 LAGQIRANSIVNVMWTAGPNSP---SSVLAEKARVMSL-----MDEGLKPVHTASV 178 >gi|256372256|ref|YP_003110080.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM 10331] gi|256008840|gb|ACU54407.1| hypothetical protein Afer_1484 [Acidimicrobium ferrooxidans DSM 10331] Length = 231 Score = 45.7 bits (107), Expect = 0.007, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 47/119 (39%), Gaps = 14/119 (11%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + + ++G AL A + ++ ++++++ L G V Sbjct: 5 RQRRSVALKIAGTVALGAAVTLGVYSFFS----------KQSQTVDIVVAAKPLVPGEVP 54 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 T + L A P+++V G I ++ L+ +V I + P+ + +L G Sbjct: 55 TKSDLAVEAVPQQSVTPGMI----PVANVRVLNNQVVTTTIPQNAPVLVSELAPHLRGN 109 >gi|269217390|ref|ZP_06161244.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp. oral taxon 848 str. F0332] gi|269213171|gb|EEZ79511.1| Flp pilus assembly protein CpaB family protein [Actinomyces sp. oral taxon 848 str. F0332] Length = 195 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 67/165 (40%), Gaps = 25/165 (15%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 M + V+ + +L A + +R ++P ++V+++K DL G + + L Sbjct: 1 MLLAVAVLTSLAAILSTIRGLAPA--------------TVSVVVAKKDLTPGTALGSSNL 46 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 E +G ++++L+ ++ + KG P+ + + + L+S P Sbjct: 47 TIAEVSAELAPEGLTR------SLEDLNERVLITSVPKGAPVTRK--MTLSDDFLASA-P 97 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVM-VRSLSERKPTVTVV 170 +G A + ++ ++ P V + S+ + V +V Sbjct: 98 EGTEIAPV-VADVGGADKLLTPGRTVALYAPPGEHSKAREAVKIV 141 >gi|297626968|ref|YP_003688731.1| hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296922733|emb|CBL57311.1| Hypothetical protein PFREUD_18030 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 211 Score = 45.3 bits (106), Expect = 0.008, Method: Composition-based stats. Identities = 39/180 (21%), Positives = 62/180 (34%), Gaps = 19/180 (10%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+I+ LA G+ V + + + P E + D G +V VP G Sbjct: 46 TVVIASRPLAAGVAVGADDVTTLQVPAEVATSATLADP------GAAIGQVVAVPRPAGT 99 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 + V +G S G I V G++ + + VV + Sbjct: 100 VLTSSDFVGKGLVADS----DGLTLVPFRIED-KGVAGVLGVGNQISVV----GANPGAD 150 Query: 167 VTVVLSNIRVIAI----DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRS 222 V+ S +R+ A+ D G+ + A+ L AA S LS+VL S Sbjct: 151 TRVIASRVRIAALPSPGSSGALDDSSSSSGALVIVAADSHTARELAAAASEYTLSVVLES 210 >gi|170742324|ref|YP_001770979.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] gi|168196598|gb|ACA18545.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] Length = 347 Score = 45.3 bits (106), Expect = 0.009, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 6/92 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LV+ Q ++ + + V + LA G V P + P + + D Sbjct: 187 LVTVGERQASLRVSGQVIEMVEVAVLARPLARGETVGPQDVTLERRPRDAAPPDGVADAA 246 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 L G + + + G P+R L Sbjct: 247 S------LVGQVAQRALAPGQPLRSADLARPD 272 >gi|302668530|ref|YP_003832978.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316] gi|302397494|gb|ADL36396.1| SAF domain-containing protein [Butyrivibrio proteoclasticus B316] Length = 314 Score = 45.3 bits (106), Expect = 0.010, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 69/187 (36%), Gaps = 37/187 (19%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPH-----HVQTEEVITENPAKFINVLISKGDLA 56 K ++ I+V+ + ++AG IA+ V Q +E+ E A + V ++K D++ Sbjct: 5 KFKLIISILVAVLI-ILAGCIAIIYVGKKTLDEKKAQIDELQYEIDANKLVVYVAKNDIS 63 Query: 57 VGMVV-TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 G + + + ++ D G + + I +PI + + Sbjct: 64 AGETLVDGENIMKQEIFTGLESEYYLSDSE--------VGGIAVLDIKALEPIMADMVT- 114 Query: 116 RGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN---DHVDVVMVRSLSE------RKPT 166 S + + R AV ++ D+VDV ++ E +KP Sbjct: 115 ------SLQIQQDTR------EYEIAVANLMTDQDEYDYVDVRIMFPTGEDYTVLTKKPV 162 Query: 167 VTVVLSN 173 ++L N Sbjct: 163 HNLILDN 169 >gi|23466106|ref|NP_696709.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705] gi|23326839|gb|AAN25345.1| hypothetical protein BL1553 [Bifidobacterium longum NCC2705] Length = 220 Score = 44.9 bits (105), Expect = 0.010, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 65/224 (29%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ G+ A+ V + ++++ + G ++ Sbjct: 35 ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 79 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + + ++++ G + ++ I DPI R + G Sbjct: 80 AADVQLADMPVSAIGPSW------ACNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 133 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 134 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 176 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 +D + + + P A ++ Q + V+R Sbjct: 177 NVDKPDTTGALGSNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 220 >gi|300741834|ref|ZP_07071855.1| SAF domain protein [Rothia dentocariosa M567] gi|300381019|gb|EFJ77581.1| SAF domain protein [Rothia dentocariosa M567] Length = 236 Score = 44.9 bits (105), Expect = 0.011, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 30/145 (20%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 +K D+++G +TP++L + D ++ + + I G+ I Sbjct: 61 AKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIPAGELIS- 114 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---- 166 + + + +R T+ + + +K + VD+ ++ S E++ Sbjct: 115 -------SASAHENIQERRRLVTVTLDR--GIASTLKAGERVDIWVISSGKEKQKVPEGE 165 Query: 167 ---------VTVVLSNIRV--IAID 180 ++ N + IA+D Sbjct: 166 GKNEDNESEQKPLVQNAEISTIAVD 190 >gi|294339847|emb|CAZ88210.1| putative Flagella basal body P-ring formation protein flgA [Thiomonas sp. 3As] Length = 244 Score = 44.9 bits (105), Expect = 0.012, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 41/117 (35%), Gaps = 20/117 (17%) Query: 27 VSPHHVQTEEVITENPA-----------KFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 +P+ QT EV P+ + V++ L G V+T L V Sbjct: 88 ANPYGAQTVEVRCTAPSVWSLYLPVRVDRPQGVVVVARALQAGHVLTAADLTMVERDATR 147 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG---NGGLSSLLPKGK 129 + G + D Q L G ++R + G P+ L G SL+ +G Sbjct: 148 LPPGAVTDA------QALVGQVLRYSVAAGQPLAQSMLTGPQLVHYGQSVSLIAQGM 198 >gi|325295400|ref|YP_004281914.1| flagella basal body P-ring formation protein FlgA [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065848|gb|ADY73855.1| flagella basal body P-ring formation protein FlgA [Desulfurobacterium thermolithotrophum DSM 11699] Length = 321 Score = 44.5 bits (104), Expect = 0.013, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 29/67 (43%), Gaps = 7/67 (10%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 I+ D+ G ++T + ++ P + I ++ E+ G + + I KG+ I+ Sbjct: 200 IAVKDIPKGKLITYSDVKIEKVPSKKARKSAI-------SLNEVIGKIAKRDIKKGEVIK 252 Query: 110 LEKLVDR 116 + L Sbjct: 253 ITDLSPN 259 >gi|154253002|ref|YP_001413826.1| flagellar basal body P-ring biosynthesis protein FlgA [Parvibaculum lavamentivorans DS-1] gi|154156952|gb|ABS64169.1| SAF domain protein [Parvibaculum lavamentivorans DS-1] Length = 326 Score = 44.5 bits (104), Expect = 0.015, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 6/99 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A +R + + +T ++V + D+ G +V ++WV P V Sbjct: 157 GAFTAIVRAPAHDALSPLRRVTGRAYPVLDVPVLVRDMQPGDIVRHQDIDWVRMPANRVS 216 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 I ++ L G+ R P G+P+RL + Sbjct: 217 QNMI------ASIDHLVGMSPRHPARAGEPLRLSDMQPP 249 >gi|311740868|ref|ZP_07714695.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] gi|311304388|gb|EFQ80464.1| conserved hypothetical protein [Corynebacterium pseudogenitalium ATCC 33035] Length = 230 Score = 44.5 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 64/192 (33%), Gaps = 27/192 (14%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + V + DL G + ++ P ++ D + +EL G ++ Sbjct: 40 KELPRVPVFSRDLPAGAELALADVDLARLPSSSIPDSAV-----AAKPEELTGRVITAAA 94 Query: 103 LKGDPIRLEKLVDRGNGGLSSLLP----KGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 KG+ I +L+ G +SSL+ R + + + + D VDVV Sbjct: 95 GKGEVITDARLL--GEELVSSLVGGSEDAAARMIPVKL-AEPDIIPHLHHGDTVDVVTAV 151 Query: 159 S--------LSERKPTVTVVLSNIRVIAIDHNI---DSDERVLVGSTATLELTPMQAKAL 207 PT RVIA + + E ST L L A + Sbjct: 152 DAASSPSDVGEGEAPTAPT----ARVIATGGRVVSTSNAEGEASSSTVLLALPHDHANDV 207 Query: 208 VAAQSVAKLSLV 219 AA L++V Sbjct: 208 AAASLSQPLTVV 219 >gi|52425835|ref|YP_088972.1| hypothetical protein MS1780 [Mannheimia succiniciproducens MBEL55E] gi|52307887|gb|AAU38387.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 258 Score = 44.5 bits (104), Expect = 0.016, Method: Composition-based stats. Identities = 30/179 (16%), Positives = 64/179 (35%), Gaps = 13/179 (7%) Query: 5 RLMGIVVSGVFALVAGIIAMRLV--SPHHVQTEEVITE-NPAKFINVLIS--KGDLAVGM 59 R++ + + A+ + L SP+ Q + + P I++LI+ + G Sbjct: 4 RVLFFISFLILAMGLSGLFFMLPEESPNTPQQQTTSEKTAPKSQISILIAQTTRQIPQGT 63 Query: 60 VVTPNI--LEWVAFPEENVFDGF-IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 ++ L + ++ F + N L G L + + G + + L+ Sbjct: 64 LLQAEDYALSELTVDSDDARANFDLKAWLANNENSSLQGYLAKQTLQVGSFLSPDLLLSP 123 Query: 117 GNGG--LSSLLPKGKRAATMDISISSA-VGGMIKPNDHVDVVMVR--SLSERKPTVTVV 170 + LSSL P + A + I + + ++ HV V + K ++ Sbjct: 124 QHPDYLLSSLDPMQEVAYRIYIKAENGYIFDTLRAGSHVSVGSQQIAGGKNNKERTELI 182 >gi|304405122|ref|ZP_07386782.1| SAF domain protein [Paenibacillus curdlanolyticus YK9] gi|304346001|gb|EFM11835.1| SAF domain protein [Paenibacillus curdlanolyticus YK9] Length = 240 Score = 44.1 bits (103), Expect = 0.019, Method: Composition-based stats. Identities = 18/155 (11%), Positives = 54/155 (34%), Gaps = 18/155 (11%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + + +++ K +A G + L + + + V + ++ + + + + Sbjct: 26 AVQARQLEGKDMVRIVVPKRFIAAGERLEAADLTYRSIAKSAVQQDMVLELVEADGWEAV 85 Query: 94 DGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG--KRAATMDISISSAVGGMIKPNDH 151 VP+ +P+ KL L + + S +V I+ Sbjct: 86 ------VPLGAEEPLLKWKLDR-------YRLLPDQSQSTFQIPRSYVLSVSNGIRAG-- 130 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 D+V++ E + + ++V ++ +++ Sbjct: 131 -DLVVLYMSGEADSSSRLFDKPVKVASVKSAANTE 164 >gi|197120087|ref|YP_002140514.1| N-acetylneuraminic acid synthase-like protein [Geobacter bemidjiensis Bem] gi|197089447|gb|ACH40718.1| N-acetylneuraminic acid synthase-related protein [Geobacter bemidjiensis Bem] Length = 338 Score = 43.7 bits (102), Expect = 0.027, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ L G +T + GF P +EL G ++ P+ + + I Sbjct: 283 IVAARALPAGHRLTAEDIAVKR-------PGF---GIPPRFREELPGSVLNEPVEQDEVI 332 Query: 109 RLEKL 113 KL Sbjct: 333 PWSKL 337 >gi|220905152|ref|YP_002480464.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869451|gb|ACL49786.1| N-acetylneuraminate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 356 Score = 43.3 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 13/97 (13%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 L A + ++ +S + EE ++ + L++ + G VT L W P + Sbjct: 267 LNATLASVGDLSLRALPEEEPARQHARRS---LVTARAIPAGTPVTAADLTWKR-PAHGI 322 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R + + + L Sbjct: 323 S---------PRNYDEVLGMRARHDLAEDTVLHWSDL 350 >gi|255325459|ref|ZP_05366563.1| SAF domain protein [Corynebacterium tuberculostearicum SK141] gi|255297545|gb|EET76858.1| SAF domain protein [Corynebacterium tuberculostearicum SK141] Length = 230 Score = 43.3 bits (101), Expect = 0.031, Method: Composition-based stats. Identities = 43/216 (19%), Positives = 66/216 (30%), Gaps = 27/216 (12%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 ++ + + + V + DL G + ++ P ++ D Sbjct: 16 GVVVRRAIAVALLIAALASALSAAKELPRVPVFSRDLPAGAELALADVDLARLPSSSIPD 75 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISI 138 + +EL G ++ KG+ I +L+ L S L G AA + Sbjct: 76 SAV-----AAKPEELTGRVITAAAGKGEVITDARLLGEE---LVSSLVGGSEAAAARMIP 127 Query: 139 SSAVGGMIKP----NDHVDVVMVRS--------LSERKPTVTVVLSNIRVIAIDHNI--- 183 I P D VDVV PT RVIA + Sbjct: 128 VKLAEPDIIPHLHHGDTVDVVTAVDAASSPSDVGEGEAPTAPT----ARVIATGGRVVST 183 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 S E ST L L A + AA L++V Sbjct: 184 SSAEGEASSSTVLLALPHDHANDVAAASLSQPLTVV 219 >gi|208701981|ref|YP_002267168.1| SAF domain protein, putative [Bacillus cereus H3081.97] gi|228943661|ref|ZP_04106082.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228956198|ref|ZP_04118081.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|332287970|ref|YP_004169156.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis CT43] gi|208658273|gb|ACI30639.1| SAF domain protein, putative [Bacillus cereus H3081.97] gi|228803515|gb|EEM50251.1| hypothetical protein bthur0006_54880 [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228816013|gb|EEM62217.1| hypothetical protein bthur0008_62160 [Bacillus thuringiensis serovar berliner ATCC 10792] gi|315273042|gb|ADU03111.1| hypothetical protein pBMB0558_00225 [Bacillus thuringiensis serovar chinensis CT-43] gi|326943372|gb|AEA19267.1| SAF domain protein [Bacillus thuringiensis serovar chinensis CT-43] Length = 249 Score = 43.3 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 45/94 (47%), Gaps = 5/94 (5%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 ++M ++ V + E++ ++ +V+++K D+ +T + ++ V+ ++ + Sbjct: 13 VSMMVLGIGTVGSYELVFKDKINTTDVIVAKQDIKFKSEITKDDIKVVSVRKDI----AV 68 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 D +P +Q L + I KG I KLVD Sbjct: 69 HDALKPEDVQLLLNKHASIDIKKGTQIY-SKLVD 101 >gi|114321516|ref|YP_743199.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1] gi|114227910|gb|ABI57709.1| N-acetylneuraminate synthase [Alkalilimnicola ehrlichii MLHE-1] Length = 348 Score = 43.3 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 28/88 (31%), Gaps = 10/88 (11%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 +S + + +++ DL G + L + P V Sbjct: 271 MSRPAAEITAAEESARTQARRSVVAATDLPAGTTLAAGHLAYKR-PGTGVP--------- 320 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLV 114 P ++L G + V + + I +KL Sbjct: 321 PTQAEDLIGRRLAVDLAHDELITPDKLA 348 >gi|261856134|ref|YP_003263417.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus neapolitanus c2] gi|261836603|gb|ACX96370.1| flagella basal body P-ring formation protein FlgA [Halothiobacillus neapolitanus c2] Length = 255 Score = 43.3 bits (101), Expect = 0.032, Method: Composition-based stats. Identities = 14/106 (13%), Positives = 36/106 (33%), Gaps = 12/106 (11%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + +N + LA G ++ L + ++ + E G + Sbjct: 123 VPARIQTMVNAISLARPLAPGTRISAEDLTTTPVNANQQVNAYLT------SPDEAIGQI 176 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG 143 V P+ G + + L G++ ++ +G + + + +V Sbjct: 177 VTRPMQAGQILTQQDL------GIAKVIHRGDHVTVIAGTGNVSVS 216 >gi|28493099|ref|NP_787260.1| hypothetical protein TWT132 [Tropheryma whipplei str. Twist] gi|28476139|gb|AAO44229.1| unknown [Tropheryma whipplei str. Twist] Length = 254 Score = 43.3 bits (101), Expect = 0.034, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 56/171 (32%), Gaps = 32/171 (18%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I ++ + A G+ + + Q V ++ L++G Sbjct: 13 ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V D +I PNA + PI+ G+ + LV +L Sbjct: 59 SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VLD 103 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRV 176 K A + I+ + G +K D VDV + E ++ +RV Sbjct: 104 KDIVAVVLRIAGD--LPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRV 152 >gi|92114102|ref|YP_574030.1| flageller protein FlgA [Chromohalobacter salexigens DSM 3043] gi|91797192|gb|ABE59331.1| flagellar protein FlgA [Chromohalobacter salexigens DSM 3043] Length = 251 Score = 43.3 bits (101), Expect = 0.035, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 6/94 (6%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFID 82 M V + Q + + + L++ + G ++ ++L W +D Sbjct: 104 VMVGVRCSNDQQVRYVQARVSASVRFLVAATAIQRGQRLSADMLGWERADVSRRPRNALD 163 Query: 83 DVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 D Q G +V ++KG +R ++L Sbjct: 164 DPSQA------IGKVVMQRLVKGMALRGDRLRQP 191 >gi|154486709|ref|ZP_02028116.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis L2-32] gi|154084572|gb|EDN83617.1| hypothetical protein BIFADO_00530 [Bifidobacterium adolescentis L2-32] Length = 206 Score = 43.3 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 ++++ ++A G +T +E P + + + G++ + Sbjct: 15 RAAIATQPIVVAVRNVAKGTAITREAVELREAPSDGSLSNAFHT------LDDAVGLIAQ 68 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 V I D + G S ++P+G ++++ ++S G+I P D V Sbjct: 69 VGIGAHDVLMS------GMARASPVVPQGH--TSIEVRLASVADGLI-PGDKV 112 >gi|261406226|ref|YP_003242467.1| SAF domain-containing protein [Paenibacillus sp. Y412MC10] gi|261282689|gb|ACX64660.1| SAF domain protein [Paenibacillus sp. Y412MC10] Length = 367 Score = 43.3 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 29/170 (17%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQT--------------EEVITENPAKFINVLISKG 53 G+ + V V + V Q EE + + Sbjct: 15 GLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSMQAAWVPVR 74 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ G + ++ V P + + +E+ G ++ +L+G PI L Sbjct: 75 DIPPGHFIEAKDIKEVRLPYDGTSGNLF------SGREEIAGKGAKIELLQGMPITGAML 128 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + L + ++ + ++ D +DV + + Sbjct: 129 FEE-EPTRPDLRHREMKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169 >gi|220930503|ref|YP_002507412.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10] gi|220000831|gb|ACL77432.1| hypothetical protein Ccel_3141 [Clostridium cellulolyticum H10] Length = 226 Score = 43.3 bits (101), Expect = 0.036, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 63/168 (37%), Gaps = 24/168 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KL ++GI + AL+A + + + + +++L+++ D+ G V+ Sbjct: 4 KLKGVIGIAIMFT-ALIATYLWVTY------------GQTEIQSVSLLVAQKDIPKGTVI 50 Query: 62 T--PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 + + E+ G I +PN + LDG + I I + + Sbjct: 51 NNAQDYFKSQKISLESAVAGAI----KPNQINLLDGRIAEQFIPANGQIVRQTFSNN--- 103 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 S +L + + + + ++ I+ D + + + S + K Sbjct: 104 --SLILKENEFVFKLPPTWVYSIPSSIRRGDKISIYEIDSKIDNKLNT 149 >gi|308177877|ref|YP_003917283.1| hypothetical protein AARI_20920 [Arthrobacter arilaitensis Re117] gi|307745340|emb|CBT76312.1| conserved hypothetical membrane protein [Arthrobacter arilaitensis Re117] Length = 221 Score = 43.0 bits (100), Expect = 0.039, Method: Composition-based stats. Identities = 30/200 (15%), Positives = 70/200 (35%), Gaps = 28/200 (14%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 AL A ++ + ++ E + V ++ ++ +G +T ++ Sbjct: 28 LALGAVLVIASVAGTVYLVGEL------HQTSTVYVASSNITLGEQLTAENMKTQEVQLG 81 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATM 134 + + ++ V P + I G+ I + + + G +R + Sbjct: 82 DTLENYLH-VDMPVGQEARANTF----ISAGELIPVTSITNSALGS--------RRPINV 128 Query: 135 DISISSAVGGMIKPNDHVDVVMVRSLSERK--PTVTVVLSNIRVIAIDHNIDSDERVLV- 191 ++ + I P VDV + + S + S + V A ++S ++ Sbjct: 129 ELPADLSSS--ITPGSFVDVWIAKRESSGNTYEVPEKLSSMVEVAA---RVESGGGLVGT 183 Query: 192 -GSTATLELTPMQAKALVAA 210 G+ L + P Q + L+ A Sbjct: 184 HGTNLELLVEPNQLEPLLQA 203 >gi|325982376|ref|YP_004294778.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp. AL212] gi|325531895|gb|ADZ26616.1| flagella basal body P-ring formation protein FlgA [Nitrosomonas sp. AL212] Length = 249 Score = 43.0 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + NVL + +A G ++T + + +G + D + G + Sbjct: 117 VQAEINVMSNVLHTARPIATGQIITNEDIAPQNTNLTQLPEGILTDASL------IVGKV 170 Query: 98 VRVPILKGDPIRLEKLVDR 116 + G P+R + L Sbjct: 171 AATNLPAGQPLRPQMLRAP 189 >gi|328543155|ref|YP_004303264.1| flagellar protein FlgA [polymorphum gilvum SL003B-26A1] gi|326412901|gb|ADZ69964.1| flagellar protein FlgA [Polymorphum gilvum SL003B-26A1] Length = 322 Score = 43.0 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 6/90 (6%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 ++ ++ + ++V+ + G ++ P L + P + V + Sbjct: 165 IAGAARSQTLTLSGVAREMVDVIALLQPIGRGSILKPEDLTVIRLPRQRVPSRAVT---- 220 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + E+ G+ R + G P+ Sbjct: 221 --SPDEIVGLAARTTLRPGQPLSRTDFERP 248 >gi|28572304|ref|NP_789084.1| membrane/secreted protein [Tropheryma whipplei TW08/27] gi|28410435|emb|CAD66821.1| putative membrane/secreted protein [Tropheryma whipplei TW08/27] Length = 248 Score = 43.0 bits (100), Expect = 0.044, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 56/171 (32%), Gaps = 32/171 (18%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I ++ + A G+ + + Q V ++ L++G Sbjct: 13 ILIGLALIAASFIGVFFVIKTNNSKSQ--------------VYVATRPLSIGDKFDAKQF 58 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V D +I PNA + PI+ G+ + LV ++ Sbjct: 59 SIVEANLGANLDKYITPGSLPNA-------VFNRPIMPGEFLPKSALVP--------VID 103 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP-TVTVVLSNIRV 176 K A + I+ + G +K D VDV + E ++ +RV Sbjct: 104 KDIVAVVLRIAGD--LPGDVKEGDLVDVWAAVKIKEEGFWQSELIAKTLRV 152 >gi|118588712|ref|ZP_01546120.1| Flageller protein FlgA [Stappia aggregata IAM 12614] gi|118438698|gb|EAV45331.1| Flageller protein FlgA [Stappia aggregata IAM 12614] Length = 331 Score = 43.0 bits (100), Expect = 0.048, Method: Composition-based stats. Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 21/146 (14%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 + ++VL+ + G +V L + V G + +V +++ G R Sbjct: 189 ATEMVDVLVLVQPVRRGDIVREEDLNIIREARTKVPAGALTEV------EDIVGKQARTT 242 Query: 102 ILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM 156 + P+ L++RG + + G + + ++ S G DV+ Sbjct: 243 LRANAPLSRNDVQRPILIERGEKITVTYVMPGMKLTSRAQAMDSGAKG--------DVID 294 Query: 157 VRSLSERKPTVTVVLSN--IRVIAID 180 V +L R+ + S +RV A + Sbjct: 295 VMNLQSRRIVPATITSRGQVRVHAAN 320 >gi|303325648|ref|ZP_07356091.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3] gi|302863564|gb|EFL86495.1| NeuB family protein [Desulfovibrio sp. 3_1_syn3] Length = 353 Score = 43.0 bits (100), Expect = 0.050, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 13/83 (15%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + EE ++ + L++ + G +TP L W P + P Sbjct: 281 ALPAEEPARQHARRS---LVTTRAVPAGQALTPADLTWKR-PAHGIS---------PRNY 327 Query: 91 QELDGVLVRVPILKGDPIRLEKL 113 E+ G+ R + + + L Sbjct: 328 DEVLGLRARRDLPEDTVLTWADL 350 >gi|213693112|ref|YP_002323698.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296454899|ref|YP_003662043.1| SAF domain-containing protein [Bifidobacterium longum subsp. longum JDM301] gi|213524573|gb|ACJ53320.1| SAF domain protein [Bifidobacterium longum subsp. infantis ATCC 15697] gi|296184331|gb|ADH01213.1| SAF domain protein [Bifidobacterium longum subsp. longum JDM301] Length = 208 Score = 42.6 bits (99), Expect = 0.058, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 66/224 (29%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ G+ A+ V + ++++ + G ++ Sbjct: 23 ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 67 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ A P + + ++++ G + ++ I DPI R + G Sbjct: 68 AVDVQLAAMPVSAIGPSW------AGNIEDVVGKVAQIDIEAADPISTHMARDAPVTPTG 121 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDRVRLVSAVGCEGADC---TLAENATVM 164 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + + + P A ++ Q + V+R Sbjct: 165 NVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208 >gi|311111727|ref|YP_003982949.1| SAF domain-containing protein [Rothia dentocariosa ATCC 17931] gi|310943221|gb|ADP39515.1| SAF domain protein [Rothia dentocariosa ATCC 17931] Length = 218 Score = 42.6 bits (99), Expect = 0.060, Method: Composition-based stats. Identities = 21/145 (14%), Positives = 52/145 (35%), Gaps = 30/145 (20%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 +K D+++G +TP++L + D ++ + + I G+ I Sbjct: 43 AKNDISIGQKITPDMLIEKQVNLGDSKDRYLSREQLESGKY-----IAVRQIPAGELIS- 96 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT---- 166 + + + + +R T+ + + K + VD+ ++ S E++ Sbjct: 97 -------SASANENIQERRRLVTVTLDR--GIASTFKAGERVDIWVISSGKEKQKVPEGE 147 Query: 167 ---------VTVVLSNIRV--IAID 180 ++ N + IA+D Sbjct: 148 GKNEDIESEQKPLVQNAEISTIAVD 172 >gi|13472577|ref|NP_104144.1| flagellar basal body P-ring biosynthesis protein FlgA [Mesorhizobium loti MAFF303099] gi|14023323|dbj|BAB49930.1| flagellar protein; FlgA [Mesorhizobium loti MAFF303099] Length = 174 Score = 42.6 bits (99), Expect = 0.065, Method: Composition-based stats. Identities = 31/167 (18%), Positives = 61/167 (36%), Gaps = 19/167 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + + ALV G + + ++ + PA + VLI + G + L+ V Sbjct: 14 ALILALVTGGVPAFAQESANPSATQIASNQPAGEV-VLIPNRVIYPGETIELAALKQV-- 70 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDRGNGGLSSLLP 126 + G +EL G + + +L G IR LV++G + Sbjct: 71 ---TLIAGKHKPDAMATHAEELQGKIAKRTLLPGRYIPTAAIREAWLVEQGAAVQVFFIA 127 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G T+ + + ++P D++ VR+ K V+++ Sbjct: 128 GG---LTITATAVT-----LQPGSAGDLIKVRNSDSGKILSGTVMAD 166 >gi|21234163|ref|NP_639740.1| hypothetical protein SCP1.167 [Streptomyces coelicolor A3(2)] gi|13620649|emb|CAC36688.1| putative membrane protein [Streptomyces coelicolor A3(2)] Length = 227 Score = 42.2 bits (98), Expect = 0.065, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 23/166 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + + V A++ + A V+ +T VL D+ G + Sbjct: 29 RERRWSVVALCIVLAVICALTAAWAVNSASDRT------------RVLALARDVPAGQAL 76 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T + + + G V + KG + L G+G Sbjct: 77 TSADVTVAEVSADAALS-----PLPATDKSSVVGKRTAVDLRKGGLLLASHLA-PGSG-- 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 L + + I A G + P D V V + + P Sbjct: 129 ---LGDDQEQVGVQIKRGMAPAGTLAPGDKVKAVTTPAEGDDLPKT 171 >gi|126668330|ref|ZP_01739289.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp. ELB17] gi|126627247|gb|EAZ97885.1| flagellar basal body P-ring biosynthesis protein [Marinobacter sp. ELB17] Length = 263 Score = 42.2 bits (98), Expect = 0.084, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ LA G + +++ G I + Q + G+ VR PI G I Sbjct: 141 LVASRPLARGERLRADMVSLQTVVVNASRRGTIAEA------QSIIGMEVRRPINSGSLI 194 Query: 109 RLEKLVDRGN 118 + L Sbjct: 195 TPDLLAAPDA 204 >gi|220934388|ref|YP_002513287.1| Flagellar basal body P-ring biosynthesis protein-like protein [Thioalkalivibrio sp. HL-EbGR7] gi|219995698|gb|ACL72300.1| Flagellar basal body P-ring biosynthesis protein-like protein [Thioalkalivibrio sp. HL-EbGR7] Length = 262 Score = 42.2 bits (98), Expect = 0.085, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 48/129 (37%), Gaps = 15/129 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ L GM + L + G+++D+ M ++R + G Sbjct: 138 EVVVLGHPLPRGMQLEAQHLRLERHDVGALPGGYLNDLELARDM------VLRRALPAGT 191 Query: 107 PIRLEKLVDR---GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + + + G +LL +G A + + + G + V V R+LS R Sbjct: 192 VLTPQMVEPPRLVRRGQRVTLLAEG-SAVNVRVEGEALADG--SRGERVQV---RNLSSR 245 Query: 164 KPTVTVVLS 172 + VVLS Sbjct: 246 RVVEGVVLS 254 >gi|312794261|ref|YP_004027184.1| SAF domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181401|gb|ADQ41571.1| SAF domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 194 Score = 41.8 bits (97), Expect = 0.086, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 71/218 (32%), Gaps = 37/218 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK I ++ + A++ +++ +S I V ++K + G + Sbjct: 1 MKNR---IIKLAVIPAVLVALLSYIFISRQ------------TNMIQVPVAKNLIHQGEI 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 + N + ++ P + G + + Q + + D I+ + + Sbjct: 46 IDDNDITFLKLPSYALPPGTVKEKEQLVGKRAGVTRVA-GDFFYDDVIKSVYVQVYEDET 104 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAID 180 L + +++ + I + + + + P V N V++I Sbjct: 105 L------------ICVNVPEPLTRFITEGTKLIIATTSTSNSGVPPFAV--ENAEVVSI- 149 Query: 181 HNIDSDERVLVGSTAT----LELTPMQAKALVAAQSVA 214 + V ST T +++ QA L ++ Sbjct: 150 --LSKTTSNTVSSTNTRYAIVKVKRDQAVQLASSLKSG 185 >gi|54307266|ref|YP_128286.1| hypothetical protein PBPRA0029 [Photobacterium profundum SS9] gi|46911686|emb|CAG18484.1| conserved hypothetical protein [Photobacterium profundum SS9] Length = 253 Score = 41.8 bits (97), Expect = 0.091, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 60/164 (36%), Gaps = 21/164 (12%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 AG + + L + A + ++++K L +TP +L + Sbjct: 101 AGRLTITLECQKPTYWKARAKAEVAIYRQLVVAKMTLNRHQEITPLMLSMKRSNVAYLRH 160 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE-----KLVDRGNGGLSSLLPKGKRAAT 133 G+ + Q L G+ R I+ G I KLV R +G L A Sbjct: 161 GYFT------SKQALTGLTSRRKIVAGKIISPRMVEQPKLVQRNDGVLIEAKFGKMNATM 214 Query: 134 MDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL--SNIR 175 +++ S V G D + VR+LS +K +++ +R Sbjct: 215 KGVALESGVKG--------DSIRVRNLSSQKEIYAIIVGPQKVR 250 >gi|332305609|ref|YP_004433460.1| flagella basal body P-ring formation protein FlgA [Glaciecola agarilytica 4H-3-7+YE-5] gi|332172938|gb|AEE22192.1| flagella basal body P-ring formation protein FlgA [Glaciecola agarilytica 4H-3-7+YE-5] Length = 236 Score = 41.8 bits (97), Expect = 0.092, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + V++ ++ G ++ + ++ V + + + + ++ G ++ + Sbjct: 111 KQMQPVVVISNAVSPGTILNQSNIKLVDM------NRALLRRTTFSTLDDVLGARIKRRV 164 Query: 103 LKGDPIRLEKL 113 G PI L Sbjct: 165 RPGQPITPNNL 175 >gi|332534350|ref|ZP_08410191.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis ANT/505] gi|332036169|gb|EGI72643.1| hypothetical protein PH505_bg00020 [Pseudoalteromonas haloplanktis ANT/505] Length = 255 Score = 41.8 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 64/207 (30%), Gaps = 23/207 (11%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + + + S + N + + +++ G VT + +E + Sbjct: 8 GATTAALTLLITSGMLASALGIRQVNDENSVTAWVVNKNMSAGQTVTVHDVEQKSID--- 64 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 + + + L G + + P+ + + LS +P G+ T+ Sbjct: 65 -PSNYSNIALSVQNPRALIGQKLATNKMVEQPLFDTDFIRAKSQNLSEAIPAGRVLYTLK 123 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI--------------DH 181 ++ I D +D+V ++ V V ++++I + D+ Sbjct: 124 LNTLDIPLSRIHKGDRLDIV-----AKTNRLVRTVARDVQLIGVSKGPKSQAEKNGVMDN 178 Query: 182 NIDSDERVLVGSTATLELTPMQAKALV 208 G + L + P +L Sbjct: 179 LAKESNSATGGVSLVLAVLPKDVYSLA 205 >gi|306823596|ref|ZP_07456971.1| SAF domain protein [Bifidobacterium dentium ATCC 27679] gi|309802885|ref|ZP_07696986.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022] gi|304553303|gb|EFM41215.1| SAF domain protein [Bifidobacterium dentium ATCC 27679] gi|308220352|gb|EFO76663.1| SAF domain protein [Bifidobacterium dentium JCVIHMP022] Length = 213 Score = 41.8 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 26/191 (13%), Positives = 64/191 (33%), Gaps = 34/191 (17%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + A+ +++ + G +T +++ P + ++ + ++ G++ + Sbjct: 48 RSTAETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTI------DDVTGMVAQ 101 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD---------ISISSAVGGMIKPND 150 + I G + S ++P+G A + + + G Sbjct: 102 IDIPDGGIVTAT------MARASPMIPQGHTAVDVRLASSIDELDVGDEVTLSG------ 149 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 V + + + S VI + +TAT ++P +A A++ Sbjct: 150 --AVPAQGDAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQV 202 Query: 211 QSVAKLSLVLR 221 Q A + V R Sbjct: 203 QEYAAIIAVTR 213 >gi|148360444|ref|YP_001251651.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila str. Corby] gi|296106491|ref|YP_003618191.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila 2300/99 Alcoy] gi|148282217|gb|ABQ56305.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila str. Corby] gi|295648392|gb|ADG24239.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila 2300/99 Alcoy] gi|307609702|emb|CBW99212.1| hypothetical protein LPW_09931 [Legionella pneumophila 130b] Length = 233 Score = 41.8 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F +VL++K L G ++ + + + + G+ D +EL G++ + I Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160 Query: 105 GDPIRL-----EKLVDRGN 118 P+ KLV +G Sbjct: 161 NSPLNPFNIELAKLVHKGE 179 >gi|54293884|ref|YP_126299.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila str. Lens] gi|53753716|emb|CAH15174.1| hypothetical protein lpl0940 [Legionella pneumophila str. Lens] Length = 233 Score = 41.8 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F +VL++K L G ++ + + + + G+ D +EL G++ + I Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160 Query: 105 GDPIRL-----EKLVDRGN 118 P+ KLV +G Sbjct: 161 NSPLNPFNIELAKLVHKGE 179 >gi|52841143|ref|YP_094942.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54296929|ref|YP_123298.1| flagellar basal body P-ring biosynthesis protein FlgA [Legionella pneumophila str. Paris] gi|52628254|gb|AAU26995.1| flagella basal body P-ring formation protein FlgA [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53750714|emb|CAH12121.1| hypothetical protein lpp0970 [Legionella pneumophila str. Paris] Length = 233 Score = 41.8 bits (97), Expect = 0.094, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 11/79 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F +VL++K L G ++ + + + + G+ D +EL G++ + I Sbjct: 107 FKSVLVAKRALLKGTKISNSDIYQTELDVQKLKQGYFTDS------KELIGLVCKHDITP 160 Query: 105 GDPIRL-----EKLVDRGN 118 P+ KLV +G Sbjct: 161 NSPLNPFNIELAKLVHKGE 179 >gi|326331487|ref|ZP_08197777.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] gi|325950743|gb|EGD42793.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] Length = 224 Score = 41.8 bits (97), Expect = 0.098, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 49/138 (35%), Gaps = 11/138 (7%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 +VL+++ + G ++ + ++ + + + ++ ++ G + Sbjct: 56 ATTDTQDVLVARHTIERGSLIEADDIKRIQISADPALEAL-----PGSSYGDVIGKKAGL 110 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 I G + E S + P G + ++ S + ++ D V VV+ + Sbjct: 111 DIAAGALLTEEATTS------SPMPPDGMSVVGLALATSHSPAVNLRTGDRVRVVVTPAE 164 Query: 161 SERKPTVTVVLSNIRVIA 178 P T + V+A Sbjct: 165 GAEAPAGTPEFTEAEVVA 182 >gi|51891538|ref|YP_074229.1| hypothetical protein STH400 [Symbiobacterium thermophilum IAM 14863] gi|51855227|dbj|BAD39385.1| hypothetical protein [Symbiobacterium thermophilum IAM 14863] Length = 203 Score = 41.8 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 55/167 (32%), Gaps = 19/167 (11%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 V +++ ++ G + +L+ V + + A DG I G+P Sbjct: 42 VWVARREILPGTQLKEEMLQRVEV-DGPTRQLLAREALPRTASDTPDGWYATRAIRPGEP 100 Query: 108 IRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTV 167 + V P+ R ++ ++P + VD+ +V E Sbjct: 101 LIPAGNVSPVPPSADVTPPEALRVVSLRTEWVGPPE--LQPTEEVDLYVVTGDGEALR-- 156 Query: 168 TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 +L+ RV+ +SD ++ P + LV A + Sbjct: 157 --ILTGARVV----QAESDRVSVLV--------PEEQVPLVIAAADG 189 >gi|120603674|ref|YP_968074.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio vulgaris DP4] gi|120563903|gb|ABM29647.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris DP4] Length = 352 Score = 41.8 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 +V P ++ + L++ + G V+ P L W P + Sbjct: 274 MVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGIS-------- 324 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R I + ++ L Sbjct: 325 -PRCYDEVVGMKARADIAEDTVLKWGHL 351 >gi|46578765|ref|YP_009573.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448177|gb|AAS94832.1| NeuB family protein [Desulfovibrio vulgaris str. Hildenborough] gi|311232632|gb|ADP85486.1| N-acetylneuraminate synthase [Desulfovibrio vulgaris RCH1] Length = 352 Score = 41.8 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 +V P ++ + L++ + G V+ P L W P + Sbjct: 274 MVGPCNITSLPSEEPARRNARRSLVAARAIPAGKVLEPADLTWKR-PAHGIS-------- 324 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R I + ++ L Sbjct: 325 -PRCYDEVVGMKARADIAEDTVLKWGHL 351 >gi|329930829|ref|ZP_08284228.1| SAF domain protein [Paenibacillus sp. HGF5] gi|328934531|gb|EGG31036.1| SAF domain protein [Paenibacillus sp. HGF5] Length = 367 Score = 41.8 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 49/170 (28%), Gaps = 29/170 (17%) Query: 8 GIVVSGVFALVAGIIAMRLVSPHHVQT--------------EEVITENPAKFINVLISKG 53 G+ + V V + V Q EE + + Sbjct: 15 GLAGAAVTGAVCAGAMLYYVHGSKEQRHVERTQYEQRIAELEETQLQQLNSMQVAWVPVR 74 Query: 54 DLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D+ G + ++ V P + + +E+ G ++ +L+G PI L Sbjct: 75 DIPPGHFIEAKDIKEVRLPYDGTSGNLF------SGREEIAGKGAKIELLRGMPITGAML 128 Query: 114 VDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 + L + ++ + ++ D +DV + + Sbjct: 129 FEE-EPTRPDLRHREMKSVYLPSD--------LRKGDVIDVRVQFPTGQD 169 >gi|288919641|ref|ZP_06413969.1| SAF domain protein [Frankia sp. EUN1f] gi|288348930|gb|EFC83179.1| SAF domain protein [Frankia sp. EUN1f] Length = 274 Score = 41.8 bits (97), Expect = 0.10, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 42/121 (34%), Gaps = 19/121 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ DL VG +V L V+ ++ D + + EL G + P+ +G+ + Sbjct: 64 VVAAADLPVGHLVVEGDLRTVSAQLDHATS---DRYYPGDRRSELVGATLARPVSRGELL 120 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG---MIKPNDHVDVVMVRSLSERKP 165 G A + G + P DHVDV + + + Sbjct: 121 SGADFA-------------GASATATRLVPVIVKAGRLPALTPGDHVDVFVYQPDAAPPS 167 Query: 166 T 166 T Sbjct: 168 T 168 >gi|317486066|ref|ZP_07944919.1| NeuB family protein [Bilophila wadsworthia 3_1_6] gi|316922693|gb|EFV43926.1| NeuB family protein [Bilophila wadsworthia 3_1_6] Length = 352 Score = 41.8 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 13/87 (14%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + + +EE +N + L++ ++ G ++ + L W P + Sbjct: 278 MRIEALASEEPARQNARRS---LVANRNIPAGKIIDKDDLTWKR-PAGGIS--------- 324 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 P E+ G+ R I + ++ L Sbjct: 325 PRHYYEVLGMAARADIEEDTVLQWAHL 351 >gi|158317577|ref|YP_001510085.1| SAF domain-containing protein [Frankia sp. EAN1pec] gi|158112982|gb|ABW15179.1| SAF domain protein [Frankia sp. EAN1pec] Length = 258 Score = 41.8 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 36/213 (16%), Positives = 71/213 (33%), Gaps = 33/213 (15%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP-NAMQELDGVLV 98 + +++ DL G +V + L DG + D + P + EL G + Sbjct: 55 ATADRTRQWVVAAADLPAGHIVVDSDLTT----ATAHLDGAMSDRYYPGDRRSELLGATL 110 Query: 99 RVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 P+ G+ + G G ++ L + + + + + P DHVDV + + Sbjct: 111 ARPVSSGELLSGADFA--GEGAAATRL--------VPVIVKAGRVPDLSPGDHVDVFVYQ 160 Query: 159 SLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELT-PMQAKALVAAQ-SVAKL 216 + P + + A +E+ + + + + Sbjct: 161 PGAAAPPETG-----------GDPAQPAQEGQAVAGAGVEIQVLHDVEFVAQDRLNSGDR 209 Query: 217 SLVLRSIADL-----NPSSSEDSDVWDVQEEGK 244 SL LR D S SE DV ++ + + Sbjct: 210 SLSLRVPVDDAIRAVAASQSERVDVVKLERDAR 242 >gi|163846486|ref|YP_001634530.1| SAF domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222524269|ref|YP_002568740.1| SAF domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163667775|gb|ABY34141.1| SAF domain protein [Chloroflexus aurantiacus J-10-fl] gi|222448148|gb|ACM52414.1| SAF domain protein [Chloroflexus sp. Y-400-fl] Length = 269 Score = 41.8 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 40/239 (16%), Positives = 71/239 (29%), Gaps = 53/239 (22%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I++ + A + + ++ V+I D+ G + Sbjct: 15 RSNPLPAILIGLGLLITAVFTVIAFL-------------EASRSEPVVILARDVPYGQQI 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V P + + P G + D ++ L++ Sbjct: 62 SADDLAVVLLPRHR--PVQLTGISSPALA---VGQYAARHLAANDLLQPSMLMEHAPTQP 116 Query: 122 SS----LLPKGKRAATMDISISSAVG-------GMIKPNDHVDV--VMVRSLSERKPTVT 168 L G A + G PN DV ++ + R+PTV Sbjct: 117 VYPNGEALTPGMVAVPFSTETIGPLTHRDRVNIGFSDPNGSPDVCDQARQAAAGREPTVN 176 Query: 169 V-------------VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVA 214 +LS RV+ +D A LELTP Q+ + A Q+ Sbjct: 177 PPDSPLQPRPYACRLLSGARVLYVDGEAG---------IAYLELTPYQSHVIQAVQAAG 226 >gi|160878992|ref|YP_001557960.1| hypothetical protein Cphy_0834 [Clostridium phytofermentans ISDg] gi|160427658|gb|ABX41221.1| hypothetical protein Cphy_0834 [Clostridium phytofermentans ISDg] Length = 300 Score = 41.8 bits (97), Expect = 0.11, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 63/165 (38%), Gaps = 23/165 (13%) Query: 1 MKLTRLMGIV--VSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG 58 M+ + + + ++ V ++ I + + ++ I E + V ++K + G Sbjct: 1 MRRVKFVLVSSFIAIVSTIIGVSIIFLYLEKQRIDFDQRIEE---RKRYVYLAKDTINPG 57 Query: 59 MVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN 118 +++ + L+ V + + +I +V G + +PI PI Sbjct: 58 EILSDDNLKKVYLECDMPTEYYITEVQ--------LGTMAIIPIEVDMPILRTMCSK--- 106 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER 163 G +S L R + ++ + + ND+VD+ + S E Sbjct: 107 GAISDEL----REVSCEVVNLNDN---LMENDYVDIRLRYSNGED 144 >gi|294786498|ref|ZP_06751752.1| LPXTG-motif cell wall anchor domain protein [Parascardovia denticolens F0305] gi|315226071|ref|ZP_07867859.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|294485331|gb|EFG32965.1| LPXTG-motif cell wall anchor domain protein [Parascardovia denticolens F0305] gi|315120203|gb|EFT83335.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 274 Score = 41.4 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 56/165 (33%), Gaps = 28/165 (16%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 RL I + + +L+A + ++ Q+ ++ D++ G + P Sbjct: 66 RLKKIATAFLISLMAFCLIQIGLTVSSNQSA-------------FVAARDISQGQEIHPG 112 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 + V + + + + G +P+ KGDP+ + + Sbjct: 113 DIAQVRMRTNPLATRTVK------SASAVLGRRAAIPLRKGDPLVPTAVKAAEDYPADYT 166 Query: 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169 T+ ++ +S + + P VD+V ++ S V Sbjct: 167 --------TIALTPASQISS-LSPGQKVDLVTEKTESCHASPVET 202 >gi|115526230|ref|YP_783141.1| N-acetylneuraminate synthase [Rhodopseudomonas palustris BisA53] gi|115520177|gb|ABJ08161.1| N-acetylneuraminate synthase [Rhodopseudomonas palustris BisA53] Length = 357 Score = 41.4 bits (96), Expect = 0.11, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 25 RLVSPHHVQTEEVITENP-AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF--I 81 R V+ P K + +++ +L G ++ L + + G Sbjct: 269 RQALGDGVKVPYASETGPLNKMVKRVVAARELKKGHMLAAEDLAFR------IPVGAKIT 322 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 +P +++ G ++ I +PI L Sbjct: 323 SHTLRPFEAEQIVGHALKRDIGFEEPITRVDL 354 >gi|87310232|ref|ZP_01092363.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM 3645] gi|87286981|gb|EAQ78884.1| hypothetical protein DSM3645_27428 [Blastopirellula marina DSM 3645] Length = 599 Score = 41.4 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 40/118 (33%), Gaps = 32/118 (27%) Query: 126 PKGKR---AATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 P G R A +++ S +K D VDV +V +L V +L +RV ++ Sbjct: 80 PIGMREFRAV-VEVEDPST----LKAGDEVDVALV-TLGGDHGHVEKILKKVRVQSV--E 131 Query: 183 IDSDERVLVG---------------------STATLELTPMQAKALVAAQSVAKLSLV 219 + E+ TL++T Q + A + L L Sbjct: 132 VPRGEKPEPEKVVAAEEEAAAEHVAPELYPTRVVTLQVTSGQLEKARVADAQGILRLS 189 >gi|152990360|ref|YP_001356082.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2] gi|151422221|dbj|BAF69725.1| flagellar protein FlgA [Nitratiruptor sp. SB155-2] Length = 238 Score = 41.4 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 9/66 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 NV+++ D+ G ++ L + +QE+ G + RV I K Sbjct: 115 LANVVVAVHDIPRGSLIQKKDLAVQKM---------VTHGKNYPDLQEIIGSVARVNIYK 165 Query: 105 GDPIRL 110 I Sbjct: 166 NRKITR 171 >gi|83858807|ref|ZP_00952329.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii HTCC2633] gi|83853630|gb|EAP91482.1| hypothetical protein OA2633_04871 [Oceanicaulis alexandrii HTCC2633] Length = 315 Score = 41.4 bits (96), Expect = 0.12, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 33/95 (34%), Gaps = 6/95 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + ++P+ ++ + +V + +A G +T ++WV PE V Sbjct: 156 LFRAQIAPYPGGDPLTVSGRAQRVADVPVLNRTIARGDTITAADVDWVRLPENQV----- 210 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 A L G+ R + P+R + Sbjct: 211 -RGEIILAETGLVGMTARRALTADRPVRSYDVEPP 244 >gi|240169343|ref|ZP_04748002.1| hypothetical protein MkanA1_08521 [Mycobacterium kansasii ATCC 12478] Length = 221 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 50/131 (38%), Gaps = 21/131 (16%) Query: 10 VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 + +G L+AG+ A+R + A V+++ DL G +T N + Sbjct: 31 IAAGGLVLLAGVAALR-------------SNTDADGSKVVVAARDLRPGSALTYNDIRLE 77 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGK 129 + DG D + + G + P +G+ + +++ G+ S G Sbjct: 78 TRSAATLPDGSQTD------LGAVVGSTLAGPARRGEVLTDVRVL--GSRLAESTAGPGA 129 Query: 130 RAATMDISISS 140 R + ++ S+ Sbjct: 130 RIVPLHLADSA 140 >gi|77454606|ref|YP_345474.1| hypothetical protein pREL1_0039 [Rhodococcus erythropolis PR4] gi|77019606|dbj|BAE45982.1| conserved hypothetical protein [Rhodococcus erythropolis PR4] Length = 234 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 31/218 (14%), Positives = 67/218 (30%), Gaps = 28/218 (12%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + + +VA I + VS +VL+ D+ G ++ Sbjct: 40 RRRPIYLAIGVALVVVAVIGMLAAVSAMRA------------TTDVLVLARDVQQGQIIE 87 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L + + G+ + G + + D+ G Sbjct: 88 SKDLTVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGTVLMPAAVTDQVVPG-- 140 Query: 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHN 182 +G + + I P D + VV + P + + +V + Sbjct: 141 ----EGLTMVGITVGYPHLPSEAILPGDMIRVVDTPREGDDPPVTGPINTKAQVYSTTTI 196 Query: 183 IDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 ++ E +T L + +A + A + ++S+VL Sbjct: 197 AEAGE-----TTLNLLVPEAEANWVAARAATKRVSIVL 229 >gi|212716655|ref|ZP_03324783.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM 16992] gi|212660359|gb|EEB20934.1| hypothetical protein BIFCAT_01588 [Bifidobacterium catenulatum DSM 16992] Length = 229 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+I+ +A G V+T + L P + D + G++ +V + + Sbjct: 63 TQPVVIAAQPIAKGSVITADSLALRDLPYDEALRNVFHDC------DDAVGLIAQVDVAE 116 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 G + S ++P+G A + Sbjct: 117 GGIVTST------MARASPVVPEGYTAIEVR 141 >gi|209964691|ref|YP_002297606.1| flagellar basal body P-ring biosynthesis protein FlgA [Rhodospirillum centenum SW] gi|209958157|gb|ACI98793.1| flagella basal body P-ring formation protein FlgA, putative [Rhodospirillum centenum SW] Length = 326 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%) Query: 34 TEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL 93 + I + V I L G V+ + W+ P E V + D ++ L Sbjct: 175 VRQTIGARAQDMVEVPILNRRLGSGEVIGDQDIAWIKVPRERVSADVVTD------LENL 228 Query: 94 DGVLVRVPILKGDPIRLEKLVDR 116 G+ R + P+R + Sbjct: 229 VGLAARRTLAANQPVRGRDVRTP 251 >gi|171741303|ref|ZP_02917110.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC 27678] gi|283455337|ref|YP_003359901.1| hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1] gi|171276917|gb|EDT44578.1| hypothetical protein BIFDEN_00382 [Bifidobacterium dentium ATCC 27678] gi|283101971|gb|ADB09077.1| Hypothetical protein BDP_0400 [Bifidobacterium dentium Bd1] Length = 213 Score = 41.4 bits (96), Expect = 0.13, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 63/191 (32%), Gaps = 34/191 (17%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + +++ + G +T +++ P + ++ + ++ G++ + Sbjct: 48 RSTVETRPAVVTTQRIRRGDTITASVVAVRDIPYDAAWNNAFHTI------DDVTGMVAQ 101 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD---------ISISSAVGGMIKPND 150 + I G + S ++P+G A + + + G Sbjct: 102 IDIPDGGIVTAT------MARASPMIPQGHTAVDVRLASSIDELDVGDEVTLSG------ 149 Query: 151 HVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA 210 V + + + S VI + +TAT ++P +A A++ Sbjct: 150 --AVPAQGDAGDDGGALRELASRATVIG-----KPAKDANGMATATFAMSPDEAAAVLQV 202 Query: 211 QSVAKLSLVLR 221 Q A + V R Sbjct: 203 QEYAAIIAVTR 213 >gi|23016878|ref|ZP_00056630.1| COG2089: Sialic acid synthase [Magnetospirillum magnetotacticum MS-1] Length = 346 Score = 41.4 bits (96), Expect = 0.14, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 11/102 (10%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINV-LISKGDLAVGMVVTPNILEWVAF 71 G+ A VA I + + ++ I +++ +LA G ++ +L Sbjct: 254 GLAAFVAAIRRVEAMLGDQIKRPTATELANMNGIRRGVVAARNLAAGTILDTTMLVCKR- 312 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G I +P + L G +R + + +P+ + + Sbjct: 313 -----PGGGI----EPEDLDRLAGFTLRRDLAEDEPLSWDDV 345 >gi|192358836|ref|YP_001982407.1| putative flagella basal body P-ring formation protein FlgA [Cellvibrio japonicus Ueda107] gi|190685001|gb|ACE82679.1| putative flagella basal body P-ring formation protein FlgA [Cellvibrio japonicus Ueda107] Length = 256 Score = 41.0 bits (95), Expect = 0.15, Method: Composition-based stats. Identities = 19/107 (17%), Positives = 44/107 (41%), Gaps = 17/107 (15%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 I + F ++ ++ DLA G ++ + ++W + ++ + +E+ G+ Sbjct: 124 IPAQVSVFRSIPVAMRDLARGEQISASDIQWETINISLLRQSYLLET------KEIIGLE 177 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 V+ I G P L ++ +G+ + + S+VGG Sbjct: 178 VKRNIGLGSPFLSASLDAP------KVIYRGE-----TVDLESSVGG 213 >gi|86739485|ref|YP_479885.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3] gi|86566347|gb|ABD10156.1| hypothetical protein Francci3_0772 [Frankia sp. CcI3] Length = 257 Score = 41.0 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 34/202 (16%), Positives = 66/202 (32%), Gaps = 29/202 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++K DL G ++ L V+ + G + + + +L G + P+ G+ + Sbjct: 63 VVAKVDLPAGHIIVAGDLATVSARLDERTSGHY---YPGSRLDDLIGATLARPVDTGELV 119 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 + + L+P + +G P DHVDV + +S + T Sbjct: 120 SGPDFAGQNTQ-PTRLVP-----IIVKAGRLPTLG----PGDHVDVFVFQSGAAAPSTT- 168 Query: 169 VVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIAD-- 225 D L + + + + SL LR D Sbjct: 169 ---------GGDQQAGRSTPAAPAGAGAEALVLHDVEFVSLEKLTSGDRSLTLRVPVDNA 219 Query: 226 ---LNPSSSEDSDVWDVQEEGK 244 + S SE DV ++ + + Sbjct: 220 IQAVAASQSERVDVVKLERDSR 241 >gi|75992380|dbj|BAE45046.1| hypothetical protein [Terrabacter sp. DBF63] Length = 239 Score = 41.0 bits (95), Expect = 0.16, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 76/230 (33%), Gaps = 41/230 (17%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 K R I + ++ G++ + A+ VL++ D+ G Sbjct: 35 KRRRPALIGLGVALVVLCGLLGWWFTARG------------AQTHTVLVAASDIEAGKP- 81 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR--GNG 119 ++ + G + +Q G+L I +G + V++ +G Sbjct: 82 ----VKVQQLSTTEIAGGGGIETMPAEQLQNTAGLLATSNIPEGTVLSPAMFVNKVTPDG 137 Query: 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---------VRSLSERKPTVTVV 170 G+S + ++ S A+G ++P D V VV+ E T Sbjct: 138 GMSIV------GVSVKPSQMPALG--LRPGDTVSVVIAHSPQASGQTGQPGETAALTTGK 189 Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 V ++ D T + L A+ L+AA +L++ L Sbjct: 190 TWRATVASVGEPGDDG-----ARTIDVTLNSDSARELMAAGGSGRLAIAL 234 >gi|327285131|ref|XP_003227288.1| PREDICTED: chromodomain-helicase-DNA-binding protein 8-like [Anolis carolinensis] Length = 2471 Score = 41.0 bits (95), Expect = 0.17, Method: Composition-based stats. Identities = 28/189 (14%), Positives = 60/189 (31%), Gaps = 35/189 (18%) Query: 33 QTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF-IDDVHQPNAMQ 91 T + + + + ++ P I+ A P + G + + Sbjct: 110 STVTAVAPSSSTGGQLTVTTAP-PSATPTAPKIVILKA-PAGSSMTGAHVAQIQAQPIGA 167 Query: 92 ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDH 151 G + +L G P+R + GN L++ + G + + +++P Sbjct: 168 ANGGKVTFAKVLTGTPLRPGVSIVSGNAVLATKVSPG-------AGTPTTLHRLVQPG-- 218 Query: 152 VDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 +P +VL ++ + S + TL TP Q + Sbjct: 219 ------------RPVKQLVLQPVK----SQAVPSTGTTPLKPAVTLTSTPAQGE------ 256 Query: 212 SVAKLSLVL 220 +++LVL Sbjct: 257 -SKRITLVL 264 >gi|33864930|ref|NP_896489.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH 8102] gi|33638614|emb|CAE06909.1| putative N-acetylneuraminic acid synthetase [Synechococcus sp. WH 8102] Length = 754 Score = 41.0 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ D+ G +T ++ + P + + QPN + +L G + V +G+ Sbjct: 409 LVAACDVPAGTEITEAMVRIQS-PGQGL---------QPNRLNDLIGRRLPVAKAQGEVF 458 Query: 109 RLEKLVDRGN 118 L Sbjct: 459 FPSDLETPAA 468 >gi|320459290|dbj|BAJ69911.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 172 Score = 41.0 bits (95), Expect = 0.18, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 28/184 (15%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++++ + G ++ ++ A P + + ++++ G + ++ I Sbjct: 12 VETEPMVVAARSIRRGDIILAVDVQLAAMPVSAIGPSW------AGNIEDVVGKVAQIDI 65 Query: 103 LKGDPI-----RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 DPI R + G + L + D V +V Sbjct: 66 EAADPISTHMARDAPVTPTGTTVIEVRLAS-------SVDDV-------LAGDRVRLVSA 111 Query: 158 RSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLS 217 + N V+ + + + + + P A ++ Q + Sbjct: 112 VGCEGADC---TLAENATVMNVGKPDTTGALGVNDRLVSFAMPPEAAAKVMELQQAGAIM 168 Query: 218 LVLR 221 V+R Sbjct: 169 AVVR 172 >gi|227832659|ref|YP_002834366.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] gi|262182856|ref|ZP_06042277.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] gi|227453675|gb|ACP32428.1| putative secreted protein [Corynebacterium aurimucosum ATCC 700975] Length = 214 Score = 41.0 bits (95), Expect = 0.19, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 50/155 (32%), Gaps = 19/155 (12%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++ D+A G + + + P + + + + G ++ G+ Sbjct: 43 RVVVMARDVAAGETLALSDVSVARVPSSALPATAL-----GSNPDDAVGRVLVAAASTGE 97 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDIS-ISSAVGGMIKPNDHVDVVMVRSLSERKP 165 + +L+ + + G + ++ + + D V++V S+ Sbjct: 98 ILTSTRLLSS-DLIADFGMEDGH---LIPLTLAEPEIARNLHHGDTVNIVSTDDGSDDIS 153 Query: 166 TVT---VVLSNIRVIAIDHNIDSDERVLVGSTATL 197 T + RV+++ D T TL Sbjct: 154 APTRGSTIARGARVVSVGTGEDD------ARTHTL 182 >gi|227548266|ref|ZP_03978315.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291] gi|227079584|gb|EEI17547.1| SAF domain protein [Corynebacterium lipophiloflavum DSM 44291] Length = 206 Score = 40.6 bits (94), Expect = 0.19, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL + G V+ P+ L+ FP + V D + D+ G ++ +G+ Sbjct: 48 VLAFAQPASAGDVLEPSHLQLRRFPADAVPDNALTDI------DAATGQILAAAASRGEV 101 Query: 108 IRLEKLVDRG 117 + +LV Sbjct: 102 VTSTRLVGPD 111 >gi|103487065|ref|YP_616626.1| N-acylneuraminate-9-phosphate synthase [Sphingopyxis alaskensis RB2256] gi|98977142|gb|ABF53293.1| N-acetylneuraminate synthase [Sphingopyxis alaskensis RB2256] Length = 749 Score = 40.6 bits (94), Expect = 0.21, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 36/97 (37%), Gaps = 17/97 (17%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G R ++ + EV+ ++ L++ + G + ++ + P + + Sbjct: 384 GYGGARGITQGEMMNREVLAKS-------LVAARPIRAGQQIADEDIQIRS-PGQGL--- 432 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 QP EL G + + +++GD L D Sbjct: 433 ------QPYFRAELVGRIAKRDMIEGDFFFQSDLADA 463 >gi|187251719|ref|YP_001876201.1| SAF domain-containing protein [Elusimicrobium minutum Pei191] gi|186971879|gb|ACC98864.1| SAF domain protein [Elusimicrobium minutum Pei191] Length = 207 Score = 40.6 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 39/209 (18%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M +V+S + + A + + K +N+ ++ D+ G V Sbjct: 14 MSPKVFAFLVMSVILIMFAVLFIF----------AHKKRMHETKHVNIFVAAEDINKGTV 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGG 120 +T +L V G +Q L G V I++G + + Sbjct: 64 ITQRLLSPVKMIAHE--PGAF----LVGDIQLLLGSYALVDIVQGSQMTKHIITAEPVIT 117 Query: 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIRVIA 178 + G R + ++ P V ++ T++ NIR+++ Sbjct: 118 APDI---GYRLYS-----------LVLPYQAVPRDHTKTDINIYRGETLINSFKNIRIVS 163 Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKAL 207 + +E V LE+ P A+ L Sbjct: 164 M--KSVPEETAFV-----LEVDPQTAQEL 185 >gi|315127359|ref|YP_004069362.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas sp. SM9913] gi|315015873|gb|ADT69211.1| flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas sp. SM9913] Length = 213 Score = 40.6 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 8/104 (7%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + V+++ +LA G V+TP+ L P + +++D L G + I Sbjct: 88 TESAPVVVATTNLARGEVITPSHLSIDMRPAHFIRAQYLEDP------TALIGSRSKRNI 141 Query: 103 LKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 +G P+ L ++ V +G+ KG R T I++ G Sbjct: 142 REGMPVLLNQICMVCKGDSVTIYANIKGLRVKTTGIALEDGTLG 185 >gi|313497782|gb|ADR59148.1| N-acetyl neuramic acid synthetase NeuB [Pseudomonas putida BIRD-1] Length = 632 Score = 40.6 bits (94), Expect = 0.22, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 38/95 (40%), Gaps = 11/95 (11%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A+ P ++ + +V I+ D+ G ++ +L + P + + Sbjct: 264 LALPWQGPGRHASQGELLNRENLGKSV-IAARDIPCGALLEQGMLRIAS-PGQGLP---- 317 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 P + EL G VR I++GD + L ++ Sbjct: 318 -----PYRLPELLGKPVRRDIVQGDFLFESDLQEQ 347 >gi|62389769|ref|YP_225171.1| hypothetical protein cg1002 [Corynebacterium glutamicum ATCC 13032] gi|21323646|dbj|BAB98273.1| Hypothetical protein [Corynebacterium glutamicum ATCC 13032] gi|41325104|emb|CAF19585.1| putative secreted protein [Corynebacterium glutamicum ATCC 13032] Length = 217 Score = 40.6 bits (94), Expect = 0.23, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 16/107 (14%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +V+ + A + IA L++ ++ + ++ ++ G V + L Sbjct: 16 LVLRRIIAFILIGIAGLLMAHSWLKKDPTA----------VVIVQEIPAGTKVEASDLGL 65 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 A P + +++ ++ G++ + G+ + V Sbjct: 66 QAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVG 106 >gi|326330144|ref|ZP_08196455.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] gi|325951957|gb|EGD43986.1| putative membrane protein [Nocardioidaceae bacterium Broad-1] Length = 223 Score = 40.6 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 22/165 (13%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 KL R VV + + G I TEE VL+++ + + Sbjct: 27 KLRRRPIHVVLALIGICLGAIGAAWAWSATTNTEE-----------VLVARTTIERWSTI 75 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + +E V + + ++ G V I G + E G Sbjct: 76 EASDIERVRISSDAA-----LTPVPASDYNKIVGTRAAVDIAAGGLLTPESTTSDGFP-- 128 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P GK + ++ + A ++ D V V++ + P Sbjct: 129 ----PTGKSIVGVSLTAAQAPATALRGGDPVRVIVTPTEGSEAPA 169 >gi|283852033|ref|ZP_06369308.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] gi|283572583|gb|EFC20568.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] Length = 357 Score = 40.6 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 49 LISKGDLAVGMVVTPNIL-EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 L + DL G +TP+ L PE+ + P + L G + + +G+ Sbjct: 298 LRAVRDLPAGHALTPDDLEALRPIPEDGLP---------PYELDALLGKTLARALGRGEH 348 Query: 108 IRLEKLVD 115 + L Sbjct: 349 LTRRHLAR 356 >gi|109899408|ref|YP_662663.1| flagellar basal body P-ring biosynthesis protein FlgA [Pseudoalteromonas atlantica T6c] gi|109701689|gb|ABG41609.1| flagella basal body P ring formation protein FlgA [Pseudoalteromonas atlantica T6c] Length = 236 Score = 40.6 bits (94), Expect = 0.24, Method: Composition-based stats. Identities = 8/71 (11%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + V++ ++ G ++ + +E + + + + + ++ G ++ + Sbjct: 111 KQMQPVVVISNAVSPGTILNQSNIELINM------NRALLRRTTFSNVDDVMGARIKRRV 164 Query: 103 LKGDPIRLEKL 113 G PI L Sbjct: 165 RPGQPITPNNL 175 >gi|56118964|ref|NP_001007976.1| sialic acid synthase [Gallus gallus] gi|53127364|emb|CAG31065.1| hypothetical protein RCJMB04_2a5 [Gallus gallus] Length = 359 Score = 40.6 bits (94), Expect = 0.25, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 38/101 (37%), Gaps = 12/101 (11%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 V A+ A AM + E E K + ++K + G ++T ++L Sbjct: 262 LVKAIRAVEKAMGSPIKQLLPCEMACNEKLGKSV---VAKVTIPEGTILTLDMLTVKV-- 316 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 GF P A+ +L G V+ I + + I + + Sbjct: 317 --GEPKGF-----APEAIFDLVGQKVKKTIEEDETITEQAV 350 >gi|125973145|ref|YP_001037055.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC 27405] gi|256003941|ref|ZP_05428927.1| SAF domain protein [Clostridium thermocellum DSM 2360] gi|281417338|ref|ZP_06248358.1| SAF domain protein [Clostridium thermocellum JW20] gi|125713370|gb|ABN51862.1| hypothetical protein Cthe_0627 [Clostridium thermocellum ATCC 27405] gi|255992069|gb|EEU02165.1| SAF domain protein [Clostridium thermocellum DSM 2360] gi|281408740|gb|EFB38998.1| SAF domain protein [Clostridium thermocellum JW20] gi|316940628|gb|ADU74662.1| hypothetical protein Clo1313_1601 [Clostridium thermocellum DSM 1313] Length = 291 Score = 40.3 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 67/190 (35%), Gaps = 32/190 (16%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLI--SKGDLAVGMV 60 +L+ I VS + + ++ + ++ +++++ + G + + Sbjct: 16 PKKLLAIFVSVAVIIGS----FIYLNS--------VNDSAKDTVDIVVVKASGGIPANTL 63 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD--RGN 118 +T + + + + F DD+ + + + + G PI ++L D + Sbjct: 64 ITKDNIGKYSI----IRKEFNDDMITYDKVDSILNKYSLYYLRNGAPIYYDQLTDEKPRD 119 Query: 119 GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS------------LSERKPT 166 L + T+ G +++P D V V + + S++ Sbjct: 120 TEWLYDLEENYEVLTIKYDYLECGGSILRPGDLVRVRVTYTEEIPSSDGMMYGGSKKVKK 179 Query: 167 VTVVLSNIRV 176 ++ +IRV Sbjct: 180 TEILFDSIRV 189 >gi|301092739|ref|XP_002997222.1| mitochondrial import receptor subunit TOM70, putative [Phytophthora infestans T30-4] gi|262111493|gb|EEY69545.1| mitochondrial import receptor subunit TOM70, putative [Phytophthora infestans T30-4] Length = 595 Score = 40.3 bits (93), Expect = 0.25, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 9/106 (8%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ ++ + V A ++ +A L H Q + I + P V++S Sbjct: 1 MEQHAILQVAVLASLATISAFVAFSL--YHKRQQQFEIAKQP----EVVVST---PEAQP 51 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 T L+ P + E + L GD Sbjct: 52 PTQQKLKQQKIPAVLPPQNADTKPTPAANIGEQEATLATKKYKAGD 97 >gi|317124027|ref|YP_004098139.1| SAF domain protein [Intrasporangium calvum DSM 43043] gi|315588115|gb|ADU47412.1| SAF domain protein [Intrasporangium calvum DSM 43043] Length = 270 Score = 40.3 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 25/162 (15%), Positives = 56/162 (34%), Gaps = 21/162 (12%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 A +A V+ T+ + ++ +A G V++ + + P E+ Sbjct: 58 GAAGLAGSAVALGVSALRPAATDAGLPTV---VAVRAIAAGAVISASDVHVENRPVEHRP 114 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 + D+ + PI + E+L GL + + A T+ + Sbjct: 115 ESAAADIAAVVGRR------AAAPIEARGMLTGERLAG---AGLLAGRSDDRAAMTVPVM 165 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + G ++ VD+ S + V++ +V+A+ Sbjct: 166 DIALTG--VEAGGRVDLYATGSGEQ-------VVAGAQVLAV 198 >gi|308069314|ref|YP_003870919.1| SAF domain protein [Paenibacillus polymyxa E681] gi|305858593|gb|ADM70381.1| SAF domain protein [Paenibacillus polymyxa E681] Length = 328 Score = 40.3 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 16/124 (12%) Query: 2 KLTRLMGIVVSGVFALV-AGIIAMRLVSPHHVQTEEVITENPAKFI---NVLISK----- 52 K G + +G+ + AG + + + + V+ + + + +K Sbjct: 9 KQKLYAGCIGAGIVGIFFAGYLMINIHQMNEVRKQAEVEAEQKWKVYEQEQRTAKKGWAV 68 Query: 53 -GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D++ G + N L+ + P + D E+ G ++ + KG + Sbjct: 69 VRDISPGEQIASNDLKGIKVPSSQTPSNLLTDKS------EVSGTTAKIELKKGSVLTSA 122 Query: 112 KLVD 115 + Sbjct: 123 MITA 126 >gi|114570498|ref|YP_757178.1| flagellar basal body P-ring biosynthesis protein FlgA [Maricaulis maris MCS10] gi|114340960|gb|ABI66240.1| flagellar protein FlgA [Maricaulis maris MCS10] Length = 314 Score = 40.3 bits (93), Expect = 0.26, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 37/97 (38%), Gaps = 7/97 (7%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G++A + H Q V A + + + +A G +T + + W++ + + Sbjct: 158 GMLAAEIAPYHGAQPVRVTGRAYA-TVELPVLARPVASGQEITASDITWISHRSDRLRPD 216 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 I D + L G+ R + +P+R L Sbjct: 217 AILDP------EALIGMETRRALRPNEPLRGYDLQRP 247 >gi|294790464|ref|ZP_06755622.1| SAF domain protein [Scardovia inopinata F0304] gi|294458361|gb|EFG26714.1| SAF domain protein [Scardovia inopinata F0304] Length = 281 Score = 40.3 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 61/182 (33%), Gaps = 32/182 (17%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +V+ +K ++ G + + L ++ + + E G + R+ KG Sbjct: 102 ASVITAKHSISAGSTIDSSDLVLSFQRTNSLTGTTVR------SESEAVGKIARISFNKG 155 Query: 106 DPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV-------R 158 DPI L + PK T+ ++ +++ VD++ R Sbjct: 156 DPILPAGLSS------APTYPKDYTTLTIS---PASTSAILRAGQKVDLISSSPCRHNNR 206 Query: 159 SLSERKPTVT------VVLSNIRVIAIDHNIDSD----ERVLVGSTATLELTPMQAKALV 208 +E ++ N +++++ + +T T+ L A +V Sbjct: 207 HNNEPSENSEYRDQGCLIAHNAVILSVNSSSRPGLSLTGSEEKPATITVALPVASALIIV 266 Query: 209 AA 210 A Sbjct: 267 QA 268 >gi|163794153|ref|ZP_02188126.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199] gi|159180767|gb|EDP65286.1| flagellar biosynthesis protein R [alpha proteobacterium BAL199] Length = 324 Score = 40.3 bits (93), Expect = 0.27, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 34/88 (38%), Gaps = 6/88 (6%) Query: 29 PHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 P T V++ ++V + + G V++ N ++W+ + Sbjct: 175 PGSQATPVVVSGRVEPMLSVPVLRNHAMPGEVISENDIQWLRVESRRASMNSVTR----- 229 Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDR 116 +++L G R PI G PIRL + Sbjct: 230 -LEDLLGRTPRRPIAAGQPIRLTDVRPN 256 >gi|318040475|ref|ZP_07972431.1| membrane-associated Zn-dependent protease [Synechococcus sp. CB0101] Length = 362 Score = 40.3 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 74/208 (35%), Gaps = 19/208 (9%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITEN-----------PAKFINVLISKGDLAV 57 + V A++AG+I + T + I + + V + + + Sbjct: 1 MGVLTALAILAGLIVVHEAGHFFAATWQGIRVSGFSVGFGPVLLERQRRGVQFALRAIPL 60 Query: 58 GMVVT-PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G V+ P+ E P ++ + + P + ++ +L + + LV Sbjct: 61 GGFVSFPDDDEESTIPADD--PDLLRNRPIPQRALVIAAGVLANLLLAWSVLVAQGLVVG 118 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRV 176 G S+ G A + ++A G ++P D + +L + V ++ ++ Sbjct: 119 IPAGFSA--TPGVLVAGVQSGQAAAASG-LRPGDRILSADGVNLGGGQSAVAQLVERVK- 174 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQA 204 A D + + G T T+ LTP Sbjct: 175 GAPDQTLQL-QAERAGQTVTIALTPADV 201 >gi|224370759|ref|YP_002604923.1| FlgA [Desulfobacterium autotrophicum HRM2] gi|223693476|gb|ACN16759.1| FlgA [Desulfobacterium autotrophicum HRM2] Length = 310 Score = 40.3 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 15/108 (13%), Positives = 37/108 (34%), Gaps = 6/108 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+ + +L+ G ++ P L + D ++ + M+ L L + + Sbjct: 186 RVVCATRNLSRGEILAPKDLCLKRINVSKIPDNYLTRLDSLVGMR-LKQSLASNGFFREN 244 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 + L++RG+ + R ++ + D + V Sbjct: 245 MVEDSPLINRGDNVVLVARKGNMRIVATGVADQEG-----RLGDQIQV 287 >gi|258652943|ref|YP_003202099.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258556168|gb|ACV79110.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 224 Score = 40.3 bits (93), Expect = 0.28, Method: Composition-based stats. Identities = 28/172 (16%), Positives = 56/172 (32%), Gaps = 18/172 (10%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V++ K D+A+G V+ L V G + + N + + G V Sbjct: 57 KAGQKTPVVVVKSDIAMGEVIERADLSTVEV------AGGVTAIAGAN-LDSVVGQRAAV 109 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 ++ G ++ L + +P G + ++ G + D V V+ + Sbjct: 110 GLMTGTLLQRSMLTQDHS------MPDGMVQVGVAVTGGRLPAGGVTTGDRVQVLALPEA 163 Query: 161 SERKPTV-TVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 VV + + A D G T+ + +A + A Sbjct: 164 GGTGTAAPKVVAKDAEIFA----AMEDPTRAGGFLLTVLVPADEAAGVAGAS 211 >gi|332982956|ref|YP_004464397.1| SAF domain-containing protein [Mahella australiensis 50-1 BON] gi|332700634|gb|AEE97575.1| SAF domain protein [Mahella australiensis 50-1 BON] Length = 211 Score = 40.3 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 21/152 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +L +K + GM + +L+ + P + G + DV+ ++ G V Sbjct: 31 TTGILTAKTTINAGMKIEETMLDTMQVPNTAIPSGAMTDVN------DVIGKTAAVTRAP 84 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV-MVRSLSER 163 GD I + L ++ +L + + +++ ++ MI + +++V + + + + Sbjct: 85 GDIIFRDALSEQEP-----VLKENETFIAVELPE--SLSAMIGEGNQINLVCLGNTAAAQ 137 Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195 +P D E+ + Sbjct: 138 QPITETQ-------PTDQTAAPAEQPQENTNV 162 >gi|157147106|ref|YP_001454425.1| flagellar basal body P-ring biosynthesis protein FlgA [Citrobacter koseri ATCC BAA-895] gi|157084311|gb|ABV13989.1| hypothetical protein CKO_02883 [Citrobacter koseri ATCC BAA-895] Length = 263 Score = 40.3 bits (93), Expect = 0.29, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 +T P ++ V+I+K L G V++ + + + ++ D E G+ Sbjct: 125 AVTVKPDVYLPVVIAKNSLERGQVLSASDVSIKKLNISSTRGNYLTDP------DEAIGL 178 Query: 97 LVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 V+ I + PI L +L L+ +G+R + Sbjct: 179 TVKRRIRELQPITLTQLESP------VLVERGQRVLMIA 211 >gi|239620983|ref|ZP_04664014.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516084|gb|EEQ55951.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 208 Score = 40.3 bits (93), Expect = 0.30, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ G+ A+ V + ++++ + G ++ Sbjct: 23 ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 67 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 68 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 121 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 164 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + + P A ++ Q + V+R Sbjct: 165 NVGKPDTTGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208 >gi|56460258|ref|YP_155539.1| flagellar basal body P-ring biosynthesis protein FlgA [Idiomarina loihiensis L2TR] gi|56179268|gb|AAV81990.1| Flagellar basal body P-ring biosynthesis protein [Idiomarina loihiensis L2TR] Length = 240 Score = 40.3 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 6/69 (8%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 ++ NV+ + +A G +++ + L + V D M L G ++ I Sbjct: 116 RYKNVVTAASPMAPGQMISESDLVFSEVDLNRVRSNVFTD------MTALVGARIKKRIA 169 Query: 104 KGDPIRLEK 112 G I Sbjct: 170 AGQAISASD 178 >gi|239917956|ref|YP_002957514.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665] gi|239839163|gb|ACS30960.1| SAF domain-containing protein [Micrococcus luteus NCTC 2665] Length = 215 Score = 40.3 bits (93), Expect = 0.31, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 15/115 (13%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G + L V + ++ +G +V + G+ + Sbjct: 54 AAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP-----EGRMVSGTVRAGELLPA 108 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 LVD P G+R + + G + D VDV + + Sbjct: 109 AALVDAD--------PDGRRPVGVALDEPLPSG--VGVGDRVDVWVAMPAEGGRG 153 >gi|309790167|ref|ZP_07684739.1| SAF domain protein [Oscillochloris trichoides DG6] gi|308227752|gb|EFO81408.1| SAF domain protein [Oscillochloris trichoides DG6] Length = 274 Score = 39.9 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 69/203 (33%), Gaps = 40/203 (19%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 K V++ D+ G ++ L V P + V P + G Sbjct: 44 ESRKSETVVVMVRDVPYGQQISAEDLGTVTVP--LHRPAQLAGVSDP---ATVVGQYAAR 98 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM---- 156 + D ++ L+ + +A + + ++ G + +D V++ Sbjct: 99 NLGSNDLLQPSMLMAAPPSQPVYPNGEQLQANMVPVPFATTTIGPLSYHDRVNIGFNDPS 158 Query: 157 --------VRSLSERKPTVTVV-------------LSNIRVIAIDHNIDSDERVLVGSTA 195 VR ++ +P+ V LS++RV+ +D + A Sbjct: 159 GAPDLCDQVRRAADGQPSAMPVVSTGMTRPYACRLLSSVRVLYVDEA---------ANVA 209 Query: 196 TLELTPMQAKALVAAQSVAKLSL 218 LELTP Q+ + A Q+ L L Sbjct: 210 YLELTPYQSHTIWALQAAG-LQL 231 >gi|228911107|ref|ZP_04074913.1| NeuB family member [Bacillus thuringiensis IBL 200] gi|229072734|ref|ZP_04205934.1| NeuB family member [Bacillus cereus F65185] gi|228710360|gb|EEL62334.1| NeuB family member [Bacillus cereus F65185] gi|228848470|gb|EEM93318.1| NeuB family member [Bacillus thuringiensis IBL 200] Length = 350 Score = 39.9 bits (92), Expect = 0.33, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 32/87 (36%), Gaps = 10/87 (11%) Query: 27 VSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQ 86 + + E + L++ GD+ G V+T +L W P + ++ Sbjct: 274 LGEKTKKPTEAEKQAIKYARRSLVATGDIEEGTVITREMLTWKR-PGTGISPKYL----- 327 Query: 87 PNAMQELDGVLVRVPILKGDPIRLEKL 113 + + G+ V I + D I E L Sbjct: 328 ----ETIIGLKVTKNIKEDDVITWEML 350 >gi|238788311|ref|ZP_04632105.1| Flagella basal body P-ring formation protein flgA [Yersinia frederiksenii ATCC 33641] gi|238723557|gb|EEQ15203.1| Flagella basal body P-ring formation protein flgA [Yersinia frederiksenii ATCC 33641] Length = 226 Score = 39.9 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G +TP +E + + G + + H G + I G P+ Sbjct: 106 VAARRLPSGAKITPEDIEMKQGRLDTLPPGALLEPHFA------QGAVSLRQINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|302559129|ref|ZP_07311471.1| membrane protein [Streptomyces griseoflavus Tu4000] gi|302476747|gb|EFL39840.1| membrane protein [Streptomyces griseoflavus Tu4000] Length = 242 Score = 39.9 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 64/187 (34%), Gaps = 9/187 (4%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 I V+ + G VT + V E+ + Q +A+++L V Sbjct: 58 QAGDRIEVVKITEPIPAGQPVTDSNTTSVMVAED--PGIHYVEWSQLDALKKLKAVSAIP 115 Query: 101 P--ILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSA---VGGMIKPNDHVDVV 155 + G+ E V G + L +G+ A ++ A VGG + D Sbjct: 116 AGVVAVGEMFGDEAKVPSGKALVGMSLKEGQYPAGLESGDVVAAYRVGGTSRSGS--DDD 173 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 S + ++++ RV + D TL + +A L A S + Sbjct: 174 AGTGGSAGGGSDSLLVEQARVDFVQAGKSDDIVSSANKPVTLLVDSAEAAVLTQAASNGE 233 Query: 216 LSLVLRS 222 ++LVL Sbjct: 234 VALVLVP 240 >gi|119715775|ref|YP_922740.1| SAF domain-containing protein [Nocardioides sp. JS614] gi|119536436|gb|ABL81053.1| SAF domain [Nocardioides sp. JS614] Length = 230 Score = 39.9 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 74/205 (36%), Gaps = 25/205 (12%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A++ ++A+ L Q + VL + G V+ + L V Sbjct: 42 AVLFVVMAVLLAGWFWQQKSDREA--------VLAIDHSVPAGAVIAKDDLRIVEV---- 89 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMD 135 +D Q + G V +++G + + + + G G+R + Sbjct: 90 ---AGVDSTISSEDAQTVIGSTAAVGLVEGQILTPDMVTSKPLPG------PGERVVGLQ 140 Query: 136 ISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST- 194 + + A G++ P D V V+ V + L + V+A + S + V T Sbjct: 141 LDATRAPTGLL-PGDVVVVIAVPPAGDPSSPAE--LDDPTVLAPQATVASADVVEGAGTR 197 Query: 195 ATLELTPMQAKALVAAQSVAKLSLV 219 TL + A+ + A + +++LV Sbjct: 198 LTLVVPEAVAERVTAYVAAGRVALV 222 >gi|289705098|ref|ZP_06501502.1| SAF domain protein [Micrococcus luteus SK58] gi|289558126|gb|EFD51413.1| SAF domain protein [Micrococcus luteus SK58] Length = 215 Score = 39.9 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 15/115 (13%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G + L V + ++ +G +V + G+ + Sbjct: 54 AAEDLPPGTPIAAGDLRPVEVNLSEAGERYLSADAPAP-----EGRMVSGTVRAGELLPA 108 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKP 165 LVD P G+R + + G + D VDV + + Sbjct: 109 AALVDAD--------PDGRRPVGVALDEPLPSG--VGVGDRVDVWVAMPAEGGRG 153 >gi|330501133|ref|YP_004378002.1| SAF domain-containing protein [Pseudomonas mendocina NK-01] gi|328915419|gb|AEB56250.1| SAF domain-containing protein [Pseudomonas mendocina NK-01] Length = 234 Score = 39.9 bits (92), Expect = 0.34, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 46/136 (33%), Gaps = 15/136 (11%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + F+ V+ + + G ++ L+ GF N+ E+ G + Sbjct: 103 QASVFLPVVHAARVIERGQTISAEQLQLQEVNIGKAPRGFY------NSFDEVVGQGAKR 156 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVG--GMIKPNDHV-DVVMV 157 + G I L L+ +G++ + + G N DV+ V Sbjct: 157 RVRAGQLIAPNLLTAP------LLIRRGQQVTIVASQDGISASATGEALANGREGDVIRV 210 Query: 158 RSLSERKPTVTVVLSN 173 R+L +K V+ + Sbjct: 211 RNLGSQKVIEAQVVED 226 >gi|94263286|ref|ZP_01287102.1| Flageller protein FlgA [delta proteobacterium MLMS-1] gi|93456369|gb|EAT06493.1| Flageller protein FlgA [delta proteobacterium MLMS-1] Length = 242 Score = 39.9 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 35/95 (36%), Gaps = 6/95 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + L+ Q E + + + V++S + G ++ + L N+ F+ Sbjct: 93 LRVTLLVNGRDQAEVRLNADLQRMGEVVVSARRINRGELIGSDDLMVQRRNISNLDSNFV 152 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 D +E G +R I G + +L + Sbjct: 153 SDP------REAVGKQLRTTIQPGAVLHQSRLENP 181 >gi|256833186|ref|YP_003161913.1| SAF domain-containing protein [Jonesia denitrificans DSM 20603] gi|256686717|gb|ACV09610.1| SAF domain protein [Jonesia denitrificans DSM 20603] Length = 221 Score = 39.9 bits (92), Expect = 0.35, Method: Composition-based stats. Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 23/179 (12%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + V ++ LA G VV + +V+ A E+ G VRV Sbjct: 41 PATTVVEVPVATRPLAAGEVVMAQDVSFVSVEVLGSPAVSF-------AGDEVVGAHVRV 93 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 + G+ + L P G ++ ++ S + ++ DHV VV S Sbjct: 94 GVGLGEVLSGAVLTQSPAP------PDGFATVSVSVANPSVLS-VVAVGDHVAVVPRDSD 146 Query: 161 SERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-------TATLELTPMQAKALVAAQS 212 + + T VL + V A +VGS T L + QA + A Sbjct: 147 AAQALTSHAVL--LSVSAPGEGSGGALSGVVGSADTSAPVTVLLAVPHEQATEVALAAQ 203 >gi|218546639|gb|ACK98965.1| flp pilus assembly protein FlpB [Aeromonas hydrophila] Length = 90 Score = 39.9 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%) Query: 23 AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A + P Q E A+ VL++ + G + P L W P Sbjct: 27 APQTAVPPGEQAPE--PAASARLAQVLVAAHRVQAGAFIHPEDLVWQTLPAAE 77 >gi|332710529|ref|ZP_08430474.1| sialic acid synthase [Lyngbya majuscula 3L] gi|332350584|gb|EGJ30179.1| sialic acid synthase [Lyngbya majuscula 3L] Length = 357 Score = 39.9 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 13/68 (19%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ +L VG V+ + + P + + P + + G ++ P+ + I Sbjct: 294 LVAGDNLPVGHVLRAEDIAMKS-PGDGLP---------PYELDHVIGKVLTKPLRVDESI 343 Query: 109 RLEKLVDR 116 L LV+ Sbjct: 344 MLAGLVEN 351 >gi|20560097|gb|AAM27839.1|AF498418_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa] gi|20560120|gb|AAM27859.1|AF498419_13 ORF_13; similar to NeuB family [Pseudomonas aeruginosa] Length = 351 Score = 39.9 bits (92), Expect = 0.36, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + D+ G +T + +V G+ P E+ G V I PI Sbjct: 296 AIRDIEAGEPLTAENIR-------SVRPGY---GLSPKHYTEVLGKTAAVKIPAHTPIHW 345 Query: 111 EKLVD 115 EKL D Sbjct: 346 EKLSD 350 >gi|157363240|ref|YP_001470007.1| SAF domain-containing protein [Thermotoga lettingae TMO] gi|157313844|gb|ABV32943.1| SAF domain protein [Thermotoga lettingae TMO] Length = 219 Score = 39.9 bits (92), Expect = 0.37, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 10/78 (12%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 +VQ +I++ +LI++ + G ++ +E V F D F + N + Sbjct: 82 YVQASALISQP----RKILIARRTIKSGEIIKREDVELVEF------DVFGKKGNFTNNL 131 Query: 91 QELDGVLVRVPILKGDPI 108 + + G + R +G+PI Sbjct: 132 EVVAGKVSRKMFREGEPI 149 >gi|289675699|ref|ZP_06496589.1| Flp pilus assembly protein CpaB [Pseudomonas syringae pv. syringae FF5] Length = 112 Score = 39.9 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 D + +++ + T T+ + L+ A L L +RS + N D W Sbjct: 1 DERLKQEQQRINARTVTVAVPQALVARLMLASQTGVLRLAVRSADEGNL-----QDYWAN 55 Query: 240 QEEGKE 245 + G E Sbjct: 56 EAGGPE 61 >gi|7662346|ref|NP_055728.1| ADNP homeobox protein 2 [Homo sapiens] gi|74757998|sp|Q6IQ32|ADNP2_HUMAN RecName: Full=ADNP homeobox protein 2; AltName: Full=Zinc finger protein 508 gi|47938799|gb|AAH71589.1| ADNP homeobox 2 [Homo sapiens] gi|119587050|gb|EAW66646.1| KIAA0863 protein, isoform CRA_a [Homo sapiens] gi|119587051|gb|EAW66647.1| KIAA0863 protein, isoform CRA_a [Homo sapiens] gi|158258569|dbj|BAF85255.1| unnamed protein product [Homo sapiens] gi|167773575|gb|ABZ92222.1| ADNP homeobox 2 [synthetic construct] gi|168269504|dbj|BAG09879.1| zinc finger protein 508 [synthetic construct] Length = 1131 Score = 39.9 bits (92), Expect = 0.38, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 34 TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90 T+ V N VL + G V+P +L A P + G + Q Sbjct: 404 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 463 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV--GGMIKP 148 + G +L + ++ G S +LP G+ A + + + V G++ P Sbjct: 464 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 522 Query: 149 NDHVDVVMVRSLSER---------KPTVTVVL---SNIR--VIAIDHNIDSD 186 N V V +++ +P V+ VL +R V+ ++ + ++ Sbjct: 523 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTN 574 >gi|163850064|ref|YP_001638107.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium extorquens PA1] gi|240137198|ref|YP_002961667.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens AM1] gi|254559210|ref|YP_003066305.1| flagella basal body p ring formation protein FlgA [Methylobacterium extorquens DM4] gi|163661669|gb|ABY29036.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium extorquens PA1] gi|240007164|gb|ACS38390.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens AM1] gi|254266488|emb|CAX22252.1| Flagella basal body p ring formation protein FlgA [Methylobacterium extorquens DM4] Length = 164 Score = 39.9 bits (92), Expect = 0.41, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 35/99 (35%), Gaps = 5/99 (5%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 + A+ S + + + + + + + G + ++L A+P Sbjct: 9 GLVLAALAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPAT--- 65 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + +A + G + R +L G+P+ + + D Sbjct: 66 --YRARTAVIDASAAIAGRVARRMLLPGEPVPVNAVDDP 102 >gi|95929875|ref|ZP_01312616.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684] gi|95134171|gb|EAT15829.1| Flageller protein FlgA [Desulfuromonas acetoxidans DSM 684] Length = 243 Score = 39.5 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 10/63 (15%), Positives = 26/63 (41%), Gaps = 7/63 (11%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 +V++++ L G +++ + V + + D ++ + G LV + G Sbjct: 119 ADVVVAQQSLKRGTIISAEDVSLVHLDVSRIREPIFD-------LKNVVGKLVARNVRAG 171 Query: 106 DPI 108 P+ Sbjct: 172 QPV 174 >gi|148231444|ref|NP_001084989.1| hypothetical protein LOC432051 [Xenopus laevis] gi|47682297|gb|AAH70693.1| MGC83164 protein [Xenopus laevis] Length = 359 Score = 39.5 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++K + G V+T N+L GF P + +L+G V+ I + + + Sbjct: 295 VVAKVKIPAGTVLTLNMLTVKV----AEPRGF-----PPEEIYDLEGKTVKREIPEDESV 345 Query: 109 RLEKL 113 E + Sbjct: 346 TEEAI 350 >gi|220932493|ref|YP_002509401.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix orenii H 168] gi|219993803|gb|ACL70406.1| Flagellar basal body P-ring biosynthesis protein [Halothermothrix orenii H 168] Length = 336 Score = 39.5 bits (91), Expect = 0.42, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 41/109 (37%), Gaps = 4/109 (3%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 VL++ ++ G + L V I+D + P L +V++P+ KG+ Sbjct: 210 KVLVATRNIKRGSNICKEDLALTTEKITGVRGEIINDFNDP----RLSYSIVKIPLQKGE 265 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + + L ++ + +S S G + D+V V+ Sbjct: 266 ILTTDHLEQPVVIHWGDIVEAEVIVRNVKVSTSVKALGSGRVGDYVKVI 314 >gi|40788964|dbj|BAA74886.2| KIAA0863 protein [Homo sapiens] Length = 1181 Score = 39.5 bits (91), Expect = 0.43, Method: Composition-based stats. Identities = 33/172 (19%), Positives = 63/172 (36%), Gaps = 20/172 (11%) Query: 34 TEEVITENPAKFINVLISKGDLAVG--MVVTPNILEW-VAFPEENVFDGFIDDVHQPNAM 90 T+ V N VL + G V+P +L A P + G + Q Sbjct: 454 TQPVGPINRPVGPGVLPVSPSVTPGVLQAVSPGVLSVSRAVPSGVLPAGQMTPAGQMTPA 513 Query: 91 QELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAV--GGMIKP 148 + G +L + ++ G S +LP G+ A + + + V G++ P Sbjct: 514 GVIPGQTATSGVLPTGQMVQSGVLPVGQTAPSRVLPPGQTA-PLRVISAGQVVPSGLLSP 572 Query: 149 NDHVDVVMVRSLSER---------KPTVTVVL---SNIR--VIAIDHNIDSD 186 N V V +++ +P V+ VL +R V+ ++ + ++ Sbjct: 573 NQTVSSSAVVPVNQGVNSGVLQLSQPVVSGVLPVGQPVRPGVLQLNQTVGTN 624 >gi|258651609|ref|YP_003200765.1| SAF domain-containing protein [Nakamurella multipartita DSM 44233] gi|258554834|gb|ACV77776.1| SAF domain protein [Nakamurella multipartita DSM 44233] Length = 214 Score = 39.5 bits (91), Expect = 0.45, Method: Composition-based stats. Identities = 22/168 (13%), Positives = 54/168 (32%), Gaps = 24/168 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 +L+R V V ++ I A+ L + + ++ V + L+ G V+ Sbjct: 11 RLSRPRWFNVRVVGGILLVIAAIVLGAR--------VMAAGSQTTPVWAASRSLSAGTVI 62 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 L V + ++ A G + P+ G+ + + +G Sbjct: 63 GAGDLTAVEVNLGDQAGAYLT-----PAGDSPVGRTLVAPLGAGELLAGSAVEPTDSG-- 115 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV 169 R ++ ++ G ++ +D+ + R + + Sbjct: 116 --------RVVSIAVAPEHMPPG-VEHGATIDLYLTREANPGSAEAAI 154 >gi|15606189|ref|NP_213566.1| flagellar protein FlgA [Aquifex aeolicus VF5] gi|6225340|sp|O67005|FLGA_AQUAE RecName: Full=Flagella basal body P-ring formation protein flgA; Flags: Precursor gi|2983376|gb|AAC06962.1| flagellar protein FlgA [Aquifex aeolicus VF5] Length = 223 Score = 39.5 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 1/61 (1%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL-DGVLVRVPILKG 105 VL++K D+ G + + +E E F ++ A++E+ G +VR LK Sbjct: 102 RVLVAKRDIYPGERLNFSNVEEREIYLERCPQNFKENFVNFVALKEIKKGTIVRRSYLKK 161 Query: 106 D 106 + Sbjct: 162 E 162 >gi|297161942|gb|ADI11654.1| SAF domain protein [Streptomyces bingchenggensis BCW-1] Length = 203 Score = 39.5 bits (91), Expect = 0.46, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 54/164 (32%), Gaps = 14/164 (8%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 ++ + VL+ D+ G V+T L V E V + G Sbjct: 27 ALVASAVGERGQVLVLARDVPAGHVLTAGDLRQVEVASE-------TGVVAAAGRSGVLG 79 Query: 96 VLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 RVP++ G L GG + PKG+ + SA G+++ D V V Sbjct: 80 RRARVPLVAG-----SLLAPGQFGGRRAFPPKGQSEVAFAVEAGSASPGVVR-GDRV-AV 132 Query: 156 MVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199 + T ++ V+ + + E T+ + Sbjct: 133 LEGPGGTDGGTGDGAAASAPVVGTVTGMKAPESPGGVRVVTVLV 176 >gi|253996323|ref|YP_003048387.1| flagella basal body P-ring formation protein FlgA [Methylotenera mobilis JLW8] gi|253983002|gb|ACT47860.1| flagella basal body P-ring formation protein FlgA [Methylotenera mobilis JLW8] Length = 265 Score = 39.5 bits (91), Expect = 0.47, Method: Composition-based stats. Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 26/127 (20%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ LA G VVT + L + + + G D+ Q G +V + + G + Sbjct: 144 LVAAVPLAQGRVVTADDLLFQSGDLTQLPAGIFTDLAQA------QGRIVNISMTAGTVL 197 Query: 109 RLEKL-----VDRGNGGLSSLLPKGKR---------------AATMDISISSAVGGMIKP 148 R E L V +G + + KG R + ++ V G+ + Sbjct: 198 RQEMLKVSPVVQQGQTVMVTSSGKGFRVSAEGKAMTKANEGQVVQVKVASGQVVSGIARQ 257 Query: 149 NDHVDVV 155 V+VV Sbjct: 258 GGQVEVV 264 >gi|331006029|ref|ZP_08329371.1| Flagellar basal-body P-ring formation protein flgA [gamma proteobacterium IMCC1989] gi|330420158|gb|EGG94482.1| Flagellar basal-body P-ring formation protein flgA [gamma proteobacterium IMCC1989] Length = 241 Score = 39.5 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 56/138 (40%), Gaps = 21/138 (15%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VL+ +L G +VT + + + +G+I D + G ++ P+ +G Sbjct: 117 SVLVINKNLPKGHIVTDTDINYSTKNIRTLRNGYISDKSF------VLGSQLKRPVREGQ 170 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRA-ATMDISISSAV-GGMI----KPNDHVDVVMVRSL 160 PI +L L+ KG + + + + V G + + +DV +R Sbjct: 171 PIYSHQLEPIE------LIKKGDKVNISAKVGSLTVVTSGTALDNGRKGEQIDVKNLR-- 222 Query: 161 SERKPTVTVV-LSNIRVI 177 S R ++ S++ VI Sbjct: 223 SSRIIRTKIIGASSVEVI 240 >gi|94267695|ref|ZP_01290964.1| Flageller protein FlgA [delta proteobacterium MLMS-1] gi|93451897|gb|EAT02628.1| Flageller protein FlgA [delta proteobacterium MLMS-1] Length = 242 Score = 39.5 bits (91), Expect = 0.48, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + + L+ Q E + + + V++S + G ++ + L N+ F+ Sbjct: 93 LRVTLLVNGRDQAEVRLNADLQRMGEVVVSARRINRGELIGSDDLMVQRRNISNLDGNFV 152 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 D +E G +R I G + +L Sbjct: 153 SDP------REAVGKQLRTTIQPGAVLHQSRLEKP 181 >gi|261341498|ref|ZP_05969356.1| putative flagellar protein [Enterobacter cancerogenus ATCC 35316] gi|288316294|gb|EFC55232.1| putative flagellar protein [Enterobacter cancerogenus ATCC 35316] Length = 261 Score = 39.5 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 11/113 (9%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 +T P ++ VL++K L G V+T + + F N+ G+I ++ G+ Sbjct: 123 AVTVKPDIYLQVLMAKNTLERGHVMTASDITRRKFNISNLRSGYITRP------DDVVGL 176 Query: 97 LVRVPILKGDPIRLEKL-----VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 ++ I + P+ L +L V+RG L G A TM I+ G Sbjct: 177 TLKRRIRELQPLSLSQLDSPVMVERGQRVLMIADQDGVEARTMGIASKKGRKG 229 >gi|226309736|ref|YP_002769630.1| hypothetical protein BBR47_01490 [Brevibacillus brevis NBRC 100599] gi|226092684|dbj|BAH41126.1| hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 262 Score = 39.5 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 24/128 (18%), Positives = 49/128 (38%), Gaps = 20/128 (15%) Query: 1 MKLTRLMGI-VVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM 59 MK L+ I ++S + A + A + + + A I V + +++ Sbjct: 1 MKKQTLLVICLISFLLAGSSFYAATQYID------AMAAEKLFAPVIKVA-AGKEISAFE 53 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +T + + V + + G D + + G + +G+ + +EKL D Sbjct: 54 PITQDDVILVQEEVDEILPGSARD------LDTVLGKRSTQTMYEGEQLLVEKLTD---- 103 Query: 120 GLSSLLPK 127 S LLP+ Sbjct: 104 --SQLLPE 109 >gi|224825773|ref|ZP_03698877.1| flagella basal body P-ring formation protein FlgA [Lutiella nitroferrum 2002] gi|224601997|gb|EEG08176.1| flagella basal body P-ring formation protein FlgA [Lutiella nitroferrum 2002] Length = 240 Score = 39.5 bits (91), Expect = 0.51, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 49/118 (41%), Gaps = 14/118 (11%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ DL G V+ + +EW P + +G ++ E G+ R + +G P+ Sbjct: 120 LVATRDLDAGKVLGADDVEWAQRPVYELEEGL-------HSPAEAVGLSSRSALRRGQPL 172 Query: 109 RLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK 164 R + L G + + K A + +A G ++ DV+ VR++ K Sbjct: 173 RRKLLEAVVLVRRGDAVEIVASKEAI-----VVTAPGESLESGRRNDVIRVRNVGSGK 225 >gi|289641009|ref|ZP_06473178.1| SAF domain protein [Frankia symbiont of Datisca glomerata] gi|289509129|gb|EFD30059.1| SAF domain protein [Frankia symbiont of Datisca glomerata] Length = 271 Score = 39.5 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 35/113 (30%), Gaps = 13/113 (11%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ DL G VV L + ++ EL G + P+ G+ Sbjct: 69 VVAAADLPAGHVVVAADLTTAS---AHLRSTTAARYFPGERRSELVGATLARPVSAGELF 125 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 V R ++ + + P DHVD+ +++ Sbjct: 126 SGADFVLDDVRP--------TRLVSIVVKD--GRAPALTPGDHVDIFVLQRSG 168 >gi|145295050|ref|YP_001137871.1| hypothetical protein cgR_0993 [Corynebacterium glutamicum R] gi|140844970|dbj|BAF53969.1| hypothetical protein [Corynebacterium glutamicum R] Length = 217 Score = 39.5 bits (91), Expect = 0.52, Method: Composition-based stats. Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 16/107 (14%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 +V+ + A + IA L++ ++ + ++ ++ G V + L Sbjct: 16 LVLRRIIAFILIGIAGLLMAHSWLKKDPTA----------VVIVQEIPAGTKVESSDLGL 65 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 A P + +++ ++ G++ + G+ + V Sbjct: 66 QAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIATKPRFVG 106 >gi|167623355|ref|YP_001673649.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella halifaxensis HAW-EB4] gi|167353377|gb|ABZ75990.1| SAF domain protein [Shewanella halifaxensis HAW-EB4] Length = 257 Score = 39.1 bits (90), Expect = 0.59, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++K + G +++ +E + + HQ + E+ G ++ + G Sbjct: 136 PVVVAKSTMGPGDLLSRGDIELEYIEQTTL------RGHQFEEISEVVGARLKRRVAPGQ 189 Query: 107 PIRLEKL 113 PI +L Sbjct: 190 PIFANQL 196 >gi|283778976|ref|YP_003369731.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068] gi|283437429|gb|ADB15871.1| hypothetical protein Psta_1193 [Pirellula staleyi DSM 6068] Length = 799 Score = 39.1 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGNG-GLSSLLPKGKRAATMDISISSAVGGMIK 147 ++ ++ G +V G + +G GL+ P G ++ T++ S + + G+ Sbjct: 144 SVNDIIGRVVSKEKNPGLAFTESSFLPKGTRPGLAGATPPGMQSMTLESSSIAGLHGLKL 203 Query: 148 PNDHVDVV 155 D VD++ Sbjct: 204 -GDKVDLI 210 >gi|33867071|ref|NP_898629.1| hypothetical protein PBD2.014 [Rhodococcus erythropolis] gi|33668905|gb|AAP73899.1| conserved hypothetical protein [Rhodococcus erythropolis] Length = 235 Score = 39.1 bits (90), Expect = 0.62, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 58/178 (32%), Gaps = 25/178 (14%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + +V I A+ LV+ + NVL+ D+A G +T Sbjct: 41 RRRPVFLAAGIALVVVFVIGAVALVNGMR------------QVTNVLVVSQDIAQGQQIT 88 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLS 122 L V + G + VPI G + + S Sbjct: 89 SQDLTTKQ-----VNAHAGIASVAIEDKATVVGQVAAVPIPSGTVLNPNAVT-------S 136 Query: 123 SLLP-KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 +++P KG + +S + ++ D V +V + P + S +V++ Sbjct: 137 AVIPTKGLTLVGVTVSYAKLPAEPLRAGDMVRIVDTPRDQDDSPVQGPITSKAQVVST 194 >gi|163750576|ref|ZP_02157814.1| flagellar basal body P-ring biosynthesis protein [Shewanella benthica KT99] gi|161329731|gb|EDQ00720.1| flagellar basal body P-ring biosynthesis protein [Shewanella benthica KT99] Length = 234 Score = 39.1 bits (90), Expect = 0.63, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ L G ++T + + + Q + + E+ G + I Sbjct: 113 PVVVARATLGPGDLITKGDIVIKYV------EQTLLRGRQFSNLDEVVGTRAKRRIAPNQ 166 Query: 107 PIRLEKL 113 PI L Sbjct: 167 PIFSNNL 173 >gi|301612838|ref|XP_002935918.1| PREDICTED: sialic acid synthase-like [Xenopus (Silurana) tropicalis] Length = 359 Score = 39.1 bits (90), Expect = 0.63, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ + G V+T ++L GF P + +L+G V+ I + + + Sbjct: 295 VVANVKIPAGTVLTLSMLTVKV----AEPRGF-----PPEEIYDLEGKTVKREIEEDESV 345 Query: 109 RLEKL 113 E + Sbjct: 346 TEEAI 350 >gi|257791659|ref|YP_003182265.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243] gi|317487875|ref|ZP_07946467.1| NeuB family protein [Eggerthella sp. 1_3_56FAA] gi|325830571|ref|ZP_08163992.1| SAF domain protein [Eggerthella sp. HGA1] gi|257475556|gb|ACV55876.1| N-acylneuraminate-9-phosphate synthase [Eggerthella lenta DSM 2243] gi|316913001|gb|EFV34518.1| NeuB family protein [Eggerthella sp. 1_3_56FAA] gi|325487317|gb|EGC89759.1| SAF domain protein [Eggerthella sp. HGA1] Length = 365 Score = 39.1 bits (90), Expect = 0.64, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 L L+ ++ E T A L++ D+ G V+ +L + P + Sbjct: 267 LEGVCFVETLLGDSSLRHSESETAARANARRSLVAAADIPAGSVIDKGMLTFKR-PGTGI 325 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILK 104 + E+ G + RV I Sbjct: 326 SPSLV---------GEVVGRVARVDIPA 344 >gi|330445342|ref|ZP_08308994.1| flagella basal body P-ring formation protein FlgA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489533|dbj|GAA03491.1| flagella basal body P-ring formation protein FlgA [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 235 Score = 39.1 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 25/131 (19%), Positives = 51/131 (38%), Gaps = 25/131 (19%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINV--------LISKGDLAVGMVVTPNILEW 68 L A + + +S + + TEN ++ V +++ L GMV+TP+ L Sbjct: 76 LTASLPGKQTLSGNVTVLVQCPTENWQLYVPVNVQLTLPKVVAAVALGRGMVLTPDKLSV 135 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK----------LVDRGN 118 + + +E+ G V+ + G+ ++ ++ G Sbjct: 136 QMI------ESRFQRGSSFDDPREIIGSKVKRSVKAGEMVQARDICLVCRNDSVIIRAGT 189 Query: 119 GGLSSLLPKGK 129 GGL +++ KGK Sbjct: 190 GGL-NIVTKGK 199 >gi|163784419|ref|ZP_02179303.1| flagella basal body P-ring formation protein [Hydrogenivirga sp. 128-5-R1-1] gi|159880310|gb|EDP73930.1| flagella basal body P-ring formation protein [Hydrogenivirga sp. 128-5-R1-1] Length = 317 Score = 39.1 bits (90), Expect = 0.65, Method: Composition-based stats. Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K +++K + G +++ + ++ +D + +L G +R + Sbjct: 188 KTTKAVVAKRYIPKGSIISYDDVKIDKV-------KAKNDERYFTNINKLIGKKLRFAVK 240 Query: 104 KGDPIR 109 KG PI Sbjct: 241 KGQPIT 246 >gi|145597813|ref|YP_001161889.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Pestoides F] gi|145209509|gb|ABP38916.1| flagella basal body P-ring formation protein [Yersinia pestis Pestoides F] Length = 305 Score = 39.1 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 218 Query: 95 GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + + LV R L G A + I+ + G Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 273 Query: 150 DHVDVVMVRSLSERKPTVTVV 170 +++ V++LS + V Sbjct: 274 ---ELIKVKNLSSGRVVTATV 291 >gi|108809059|ref|YP_652975.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Antiqua] gi|108810744|ref|YP_646511.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Nepal516] gi|167398491|ref|ZP_02304015.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|21960413|gb|AAM87006.1|AE013948_14 putative flagellar protein [Yersinia pestis KIM 10] gi|45437658|gb|AAS63208.1| putative flagellar protein [Yersinia pestis biovar Microtus str. 91001] gi|108774392|gb|ABG16911.1| flagella basal body P-ring formation protein [Yersinia pestis Nepal516] gi|108780972|gb|ABG15030.1| putative flagella basal body P-ring formation protein [Yersinia pestis Antiqua] gi|167050995|gb|EDR62403.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] Length = 305 Score = 39.1 bits (90), Expect = 0.67, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 165 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 218 Query: 95 GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + + LV R L G A + I+ + G Sbjct: 219 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 273 Query: 150 DHVDVVMVRSLSERKPTVTVV 170 +++ V++LS + V Sbjct: 274 ---ELIKVKNLSSGRVVTATV 291 >gi|218676248|ref|YP_002395067.1| hypothetical protein VS_II0470 [Vibrio splendidus LGP32] gi|218324516|emb|CAV25990.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 258 Score = 39.1 bits (90), Expect = 0.70, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 76/210 (36%), Gaps = 27/210 (12%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEV---ITENPAKFINVLISKGDLAV 57 M ++ +V +F+ + ++ +++ T+E + E +++L+++ + Sbjct: 1 MNRVIILFLVALSIFSTLI------YINTNYISTDEEPLGVQEQEEPKVSILVTQKAIKR 54 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 +TP + P ++ DG+ + ++ G L + I +G I + + + Sbjct: 55 SQPLTPKFYDKKFVPISDL-DGYYYTLEDDLIVEP--GALFKEDISEGTYITQDMISNPA 111 Query: 118 NGGLSSL-LPKGKRAATMDISISSAV-GGMIKPNDHVDVVMVRSLSE----------RKP 165 + L L G+ +++ V + D V V S Sbjct: 112 DRDYIYLSLNDGELPYFYEVTGIGVVQTATLTAGDKVSFVSTTSSKSNLVENGYGDIGDL 171 Query: 166 TVTVVLSNIRVIAIDHNIDSDERVLVGSTA 195 V++S RV+ I+ E +A Sbjct: 172 VSRVIISGARVL---QVIEGSEDSNSADSA 198 >gi|315497880|ref|YP_004086684.1| flagella basal body p-ring formation protein flga [Asticcacaulis excentricus CB 48] gi|315415892|gb|ADU12533.1| flagella basal body P-ring formation protein FlgA [Asticcacaulis excentricus CB 48] Length = 258 Score = 39.1 bits (90), Expect = 0.72, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 31/97 (31%), Gaps = 6/97 (6%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDG 79 G+ + + + + + NVL+ L+ G V+ + W Sbjct: 93 GLRRIIVSAGADGISATQARAEAGRTKNVLVFTRSLSAGEVIAAADIAWQPVQAHLAGGS 152 Query: 80 FIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + D + G VR+P+ G +R L Sbjct: 153 LVSDP------EAAIGKTVRLPVRDGGVVRPGDLTAP 183 >gi|27380940|ref|NP_772469.1| flagellar basal body P-ring biosynthesis protein FlgA [Bradyrhizobium japonicum USDA 110] gi|27354106|dbj|BAC51094.1| blr5829 [Bradyrhizobium japonicum USDA 110] Length = 382 Score = 38.7 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 7/90 (7%) Query: 28 SPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQP 87 + T+ T + + V + D+ ++ + + P+ V + Sbjct: 176 DNNPAPTKLRFTGTAIETVEVAVLTRDIDRADLLKSSDVALERRPKAEV-------TGEA 228 Query: 88 NAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 + G+ +R P+ G PIR+ +V Sbjct: 229 ASRDRTIGMQLRRPMRAGTPIRVADIVKPD 258 >gi|219848639|ref|YP_002463072.1| SAF domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542898|gb|ACL24636.1| SAF domain protein [Chloroflexus aggregans DSM 9485] Length = 265 Score = 38.7 bits (89), Expect = 0.75, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 61/243 (25%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + L I++ + A + + + V+I D+ G + Sbjct: 15 RSNPLPAILIGLGLIVTAVFTVIAFL-------------EAGQSEPVVILARDVPYGHQL 61 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 + + L V P + + P ++ G + D ++ + + Sbjct: 62 SADDLTVVLLPRHR--PIQLTGIASP---AQVIGQYAARNLSANDLLQPSMVTAQSPAQP 116 Query: 122 SS----LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS---------------- 161 L G + + S+ G + +D V++ Sbjct: 117 VYPNGETLTPGM----VPVPFSTETIGPLTHHDRVNIGFNDPSGAADVCDRARSVAEGRT 172 Query: 162 ----------ERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQ 211 + +P +LS RV+ ID A LELTP Q+ A+ A Q Sbjct: 173 PTVLPPDTPLQPRPYACRLLSGARVLYIDSE---------AQVAYLELTPYQSHAIWALQ 223 Query: 212 SVA 214 + Sbjct: 224 AAG 226 >gi|254785365|ref|YP_003072794.1| flagella basal body P-ring formation protein FlgA [Teredinibacter turnerae T7901] gi|237683904|gb|ACR11168.1| flagella basal body P-ring formation protein FlgA [Teredinibacter turnerae T7901] Length = 228 Score = 38.7 bits (89), Expect = 0.76, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 6/80 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + F V+I+ G + G +T + ++ G++ D + + G+ Sbjct: 94 VPVQVETFEEVVIAAGAIGRGAQITAGDVVTQRMNTSHLTGGYLRDPAR------VVGLE 147 Query: 98 VRVPILKGDPIRLEKLVDRG 117 R + G+ I+L ++ Sbjct: 148 ARRMLRPGEIIKLNQVKAPD 167 >gi|317491682|ref|ZP_07950117.1| SAF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920116|gb|EFV41440.1| SAF domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 269 Score = 38.7 bits (89), Expect = 0.78, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 9/120 (7%) Query: 6 LMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNI 65 L + + + +AGI + + V+ + + I V + +L ++ + Sbjct: 2 LFFLSIIVIAVGIAGIFVQKKTPENEVKQDAITA---VNTITVAKAVRELKPYDILKRDD 58 Query: 66 LEWVAFPEENVFDGFIDDVHQPNAMQ--ELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + I D +++ +L G LVR I G I + + ++ Sbjct: 59 YTLTSIEVAQ----DIKDRRDISSLDNGDLQGYLVRHNISNGSFILPHMVESPSSSTFAA 114 >gi|317125617|ref|YP_004099729.1| SAF domain protein [Intrasporangium calvum DSM 43043] gi|315589705|gb|ADU49002.1| SAF domain protein [Intrasporangium calvum DSM 43043] Length = 238 Score = 38.7 bits (89), Expect = 0.82, Method: Composition-based stats. Identities = 35/208 (16%), Positives = 63/208 (30%), Gaps = 35/208 (16%) Query: 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEW 68 ++V + LV+ + RLV+ +T ++ DL G VT Sbjct: 36 LMVGIILVLVSATLGARLVASADERTPY------------FVAVDDLVAGDRVTGATFRR 83 Query: 69 VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKG 128 V + G++ G + + G+ + L D G + Sbjct: 84 VDVALSDGMGGYLRADFPVP-----VGKALTRDLRAGELVPSSALSDPGEVDVQR----- 133 Query: 129 KRAATMDISISSAVGGMIKPNDHVDVVMV-----RSLSERKPTVTVVLSNIRVIAIDHNI 183 T+ ++ VG + VDV + + ++L V+ I Sbjct: 134 ---VTVRTDATATVG--LDRGQRVDVYVTPDAHGAGAEDEDSGTELLLEAAAVVEI--VA 186 Query: 184 DSDERVLVGST-ATLELTPMQAKALVAA 210 T L + Q KA+V A Sbjct: 187 SEGGFGAAARTSVQLYVPTGQVKAVVEA 214 >gi|257387509|ref|YP_003177282.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei DSM 12286] gi|257169816|gb|ACV47575.1| N-acylneuraminate-9-phosphate synthase [Halomicrobium mukohataei DSM 12286] Length = 354 Score = 38.7 bits (89), Expect = 0.84, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 32/98 (32%), Gaps = 10/98 (10%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A+ +A R Q N + L + DL+ G V++ N + + Sbjct: 257 AVTLSRLAARARGNAEKQPTAGERRNKSTTRKSLHAAVDLSAGEVLSSNDINILR----- 311 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 D P + G ++ + GDPI + Sbjct: 312 -----PTDGLSPKHYDTVIGAVLETDLGAGDPITTANV 344 >gi|218532879|ref|YP_002423695.1| signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] gi|218525182|gb|ACK85767.1| signal transduction histidine kinase [Methylobacterium chloromethanicum CM4] Length = 1096 Score = 38.7 bits (89), Expect = 0.88, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S + G+RA T+ +S VGG + V ++ RS + P T+V I Sbjct: 767 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 821 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210 ++ +D+ L G EL+P A+ L A Sbjct: 822 DLRADQYDLSGPKI--ELSPKAAEILTLA 848 >gi|115434052|ref|NP_001041784.1| Os01g0107700 [Oryza sativa Japonica Group] gi|52076197|dbj|BAD44851.1| pectin-glucuronyltransferase -like [Oryza sativa Japonica Group] gi|52076236|dbj|BAD44890.1| pectin-glucuronyltransferase -like [Oryza sativa Japonica Group] gi|113531315|dbj|BAF03698.1| Os01g0107700 [Oryza sativa Japonica Group] gi|215697737|dbj|BAG91731.1| unnamed protein product [Oryza sativa Japonica Group] gi|222617591|gb|EEE53723.1| hypothetical protein OsJ_00064 [Oryza sativa Japonica Group] Length = 550 Score = 38.7 bits (89), Expect = 0.89, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 42/102 (41%), Gaps = 5/102 (4%) Query: 21 IIAMRLVSPHHVQTEEVITENPA-KFINVLISKGDLAVGMVVTPNILEW-VAFPEENVFD 78 ++A L + Q + P ++L + +L G P++ P EN+ D Sbjct: 47 LLASLLHNNTSNQPDSAAASQPPLPSTSILQLQTNLPSGFTTVPSMFLVPSPSPAENLDD 106 Query: 79 GFIDDVHQPNAMQ---ELDGVLVRVPILKGDPIRLEKLVDRG 117 G +++ P+ + ++ PI G PIR + ++G Sbjct: 107 GSMEETDPPDLKENPPAESAPFLQEPISSGSPIRRSDIYNKG 148 >gi|318058041|ref|ZP_07976764.1| hypothetical protein SSA3_08873 [Streptomyces sp. SA3_actG] gi|318081071|ref|ZP_07988403.1| hypothetical protein SSA3_31325 [Streptomyces sp. SA3_actF] Length = 243 Score = 38.7 bits (89), Expect = 0.93, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 74/200 (37%), Gaps = 35/200 (17%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99 ++V+ + D+ G ++ + + ++ ++ D + + +L L + Sbjct: 56 QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLGSALPK 115 Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 ++ G+ + + +VD G + L +G+ G +KP D V V V Sbjct: 116 GSLVVGEMLIAKDKSVVDEGKALVGLALQEGQ------------YPGGLKPGDTVAVYHV 163 Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202 S+ +LS A D+D G T T+ + Sbjct: 164 GKDAGAPASGESDSSAGNRTLLS-----AQADVKDADGSSKGGEALSTGDRTLTVSVPAS 218 Query: 203 QAKALVAAQSVAKLSLVLRS 222 +A+AL A SV ++++VL Sbjct: 219 EAQALAQASSVGEVAVVLVP 238 >gi|313682507|ref|YP_004060245.1| uroporphyrin-iii c-methyltransferase [Sulfuricurvum kujiense DSM 16994] gi|313155367|gb|ADR34045.1| uroporphyrin-III C-methyltransferase [Sulfuricurvum kujiense DSM 16994] Length = 258 Score = 38.3 bits (88), Expect = 0.95, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 11/104 (10%) Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV--LSNIR 175 +G LS + R + +S+ SA D V++ + L T V+ LS IR Sbjct: 122 SGPLSVGIAPTARGVSTGVSVVSAH----LSGDRVNLSWIPMLGVSDHTTVVLMGLSRIR 177 Query: 176 VI---AIDHNIDSDERVLVGSTATLELTPMQAKAL--VAAQSVA 214 I A+D ID V + S AT + L + A + Sbjct: 178 QIVKEALDQGIDPHLPVAIVSNATTAIQSSIVTTLSELVATAKG 221 >gi|255609741|ref|XP_002539089.1| Flagella basal body P-ring formation protein flgA precursor, putative [Ricinus communis] gi|223508772|gb|EEF23295.1| Flagella basal body P-ring formation protein flgA precursor, putative [Ricinus communis] Length = 163 Score = 38.3 bits (88), Expect = 1.00, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ +A G +T + LE +G + +++ G + I G+ + Sbjct: 42 VVATHPIARGQAITQDDLELQTRDLTQYPNGTFSNP------EQIIGRTATLNIPAGEVL 95 Query: 109 RLEKL 113 R E+L Sbjct: 96 RPEQL 100 >gi|184200536|ref|YP_001854743.1| hypothetical protein KRH_08900 [Kocuria rhizophila DC2201] gi|183580766|dbj|BAG29237.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 224 Score = 38.3 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 39/173 (22%), Positives = 65/173 (37%), Gaps = 19/173 (10%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DLAVG +TP L V V G++ + + R ++ I Sbjct: 61 AAEDLAVGQRITPEDLTTVDAHLAQVAGGYVPGGQPLQENAVVTQRVARGQLVPAASIGT 120 Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTV- 169 +DR G++ P +A P HVDV + R + + + Sbjct: 121 ADALDRTPVGIALQTPLPAQA---------------DPGAHVDVWVARPKTSGRGFMEPK 165 Query: 170 -VLSNIRVIAIDHNIDSDERVLVGSTATLELTPMQAKALVAA-QSVAKLSLVL 220 ++ + +D D+ G T + +TP Q LV A + AK++LVL Sbjct: 166 KLVPGAEIARVDTK-DTALGGSGGVTVHVLVTPSQVGPLVDALGNDAKVTLVL 217 >gi|229819753|ref|YP_002881279.1| SAF domain protein [Beutenbergia cavernae DSM 12333] gi|229565666|gb|ACQ79517.1| SAF domain protein [Beutenbergia cavernae DSM 12333] Length = 219 Score = 38.3 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 24/147 (16%), Positives = 49/147 (33%), Gaps = 22/147 (14%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V + DLA G + + L + +G + + ++ + Sbjct: 45 AVQAADESVAVYAATDDLAPGDRLDADDLTVRQIRWDG--EGGTYLLAEDGVPDDV---V 99 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVM- 156 V P+ G+ LV G + + R M + S +G HVDV Sbjct: 100 VTRPVGAGE------LVPSSATGPADAVDT--RPVAMPVPAGSGIG----AGVHVDVWAV 147 Query: 157 ----VRSLSERKPTVTVVLSNIRVIAI 179 + +V+ N+ V ++ Sbjct: 148 PPSSTGDDGDEAAVPELVVENVLVASV 174 >gi|218129976|ref|ZP_03458780.1| hypothetical protein BACEGG_01559 [Bacteroides eggerthii DSM 20697] gi|217987834|gb|EEC54160.1| hypothetical protein BACEGG_01559 [Bacteroides eggerthii DSM 20697] Length = 340 Score = 38.3 bits (88), Expect = 1.0, Method: Composition-based stats. Identities = 15/96 (15%), Positives = 33/96 (34%), Gaps = 14/96 (14%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINV----LISKGDLAVGMVVTPNILEWVAFP 72 L A + A+R + E+ ++ + + +V +++ D+ G ++T L Sbjct: 248 LKAMVTAIRNIEQALGNEEKKVSTSEGRNKSVARKSIVAAKDIEKGELLTEENLTVKR-- 305 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 G I P + + G + I Sbjct: 306 ----PGGGI----SPMKWEYIIGTRAIRTFEADEQI 333 >gi|163853938|ref|YP_001641981.1| PAS sensor protein [Methylobacterium extorquens PA1] gi|163665543|gb|ABY32910.1| PAS sensor protein [Methylobacterium extorquens PA1] Length = 1096 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S + G+RA T+ +S VGG + V ++ RS + P T+V I Sbjct: 767 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 821 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210 ++ +D+ L G EL+P A+ L A Sbjct: 822 DLRADQYDLSGPKI--ELSPKAAEILTLA 848 >gi|255021350|ref|ZP_05293398.1| Flagellar basal-body P-ring formation protein flgA [Acidithiobacillus caldus ATCC 51756] gi|254969213|gb|EET26727.1| Flagellar basal-body P-ring formation protein flgA [Acidithiobacillus caldus ATCC 51756] Length = 226 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + ++++ L G V+T L + ++ +++ E G +R Sbjct: 98 VQSQKIVVAAHSLTAGTVLTAGDLALMPGNAASL------AGTPLSSLSEATGRTLRFGT 151 Query: 103 LKGDPIRLEKLVDR 116 + G PI L Sbjct: 152 VAGQPITQSMLAAP 165 >gi|254563908|ref|YP_003071003.1| hybrid histidine kinase [Methylobacterium extorquens DM4] gi|254271186|emb|CAX27197.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two GAF, HWE histidine kinase, ATPase and REC (CheY-like) [Methylobacterium extorquens DM4] Length = 1069 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S + G+RA T+ +S VGG + V ++ RS + P T+V I Sbjct: 740 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 794 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210 ++ +D+ L G EL+P A+ L A Sbjct: 795 DLRADQYDLSGPKI--ELSPKAAEILTLA 821 >gi|240141392|ref|YP_002965872.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two GAF, HWE histidine kinase, ATPase and REC (CheY-like) [Methylobacterium extorquens AM1] gi|240011369|gb|ACS42595.1| putative hybrid histidine kinase; Domains: two PAS, two PAC, two GAF, HWE histidine kinase, ATPase and REC (CheY-like) [Methylobacterium extorquens AM1] Length = 1069 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 7/89 (7%) Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S + G+RA T+ +S VGG + V ++ RS + P T+V I Sbjct: 740 SIVARTGERAETVS-DYASLVGGRLLTLARVQALLTRSPNAGVPVATIVRDEID----AQ 794 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210 ++ +D+ L G EL+P A+ L A Sbjct: 795 DLRADQYDLSGPKI--ELSPKAAEILTLA 821 >gi|218528667|ref|YP_002419483.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] gi|218520970|gb|ACK81555.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] Length = 164 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 13/99 (13%), Positives = 33/99 (33%), Gaps = 7/99 (7%) Query: 20 GIIAMRLVSPHHVQTEEVITENPAKFINVL--ISKGDLAVGMVVTPNILEWVAFPEENVF 77 G++ L + ++ + + G + ++L A+P Sbjct: 9 GLVLASLAAGSAQPIAPAQAVEGMANAELMLPVPTVTIYPGDTIKESMLRMQAYPAT--- 65 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + +A + G + R +L G+P+ + + D Sbjct: 66 --YRARTAVIDASAAIAGRVARRMLLPGEPVPVNAVDDP 102 >gi|317483025|ref|ZP_07942027.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] gi|316915526|gb|EFV36946.1| SAF domain-containing protein [Bifidobacterium sp. 12_1_47BFAA] Length = 208 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ GI A+ V + ++++ + G ++ Sbjct: 23 ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 67 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 68 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 121 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 122 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 164 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + P A ++ Q + V+R Sbjct: 165 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 208 >gi|313677870|ref|YP_004055866.1| n-acetylneuraminate synthase [Marivirga tractuosa DSM 4126] gi|312944568|gb|ADR23758.1| N-acetylneuraminate synthase [Marivirga tractuosa DSM 4126] Length = 353 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 31 HVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAM 90 + +E + EN + LI+ D+ G V+T + L W P + FID + + Sbjct: 282 KLASESISAENARRS---LIATSDIPKGTVITKDHLTWKR-PAYGISPKFIDQLIGKKTL 337 Query: 91 QELD 94 ++ Sbjct: 338 FDIK 341 >gi|37676252|ref|NP_936648.1| hypothetical protein VVA0592 [Vibrio vulnificus YJ016] gi|326424173|ref|NP_762070.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6] gi|37200793|dbj|BAC96618.1| hypothetical protein [Vibrio vulnificus YJ016] gi|319999556|gb|AAO07060.2| Flp pilus assembly protein RcpC/CpaB [Vibrio vulnificus CMCP6] Length = 272 Score = 38.3 bits (88), Expect = 1.1, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 87/243 (35%), Gaps = 36/243 (14%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPA--KFINVLISKGDLAVGM 59 K ++M V +F +A + + +TEEV+ P + +L + Sbjct: 11 KKDKIMNRAVIILFLSLAIFSTLFFLMGDMFETEEVVAAEPVIEPTVVLLELTQGVEKSG 70 Query: 60 VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 +V+ ++ + + + + + N + G L P+LKG + + + + G+ Sbjct: 71 IVSKSVYKEIEV---KLSEAHSNRHALKNELNIQPGALFNRPLLKGTILSNDVISNPGDR 127 Query: 120 GLSSLLPKGKRAATMDISISS-----AVGGMI-----KPND----------HVDVVMVRS 159 L ++ + +I +P D +++ Sbjct: 128 DYMFL--------SLKKDEVPYYYEPSSSNIIENITLQPGDSVSFVSTTSSRSNLLETGY 179 Query: 160 LSERKPTVTVVLSNIRVIAI---DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 +++S+ +VI + + N+++ + ++ + L Q L AQ + + Sbjct: 180 KDIGHLVSKIIISDAKVIQVIKSERNVNTTKASESQNSLVIALKVPQVLKLEMAQKIGDI 239 Query: 217 SLV 219 S+V Sbjct: 240 SIV 242 >gi|333025173|ref|ZP_08453237.1| putative membrane protein [Streptomyces sp. Tu6071] gi|332745025|gb|EGJ75466.1| putative membrane protein [Streptomyces sp. Tu6071] Length = 243 Score = 38.3 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 73/200 (36%), Gaps = 35/200 (17%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99 ++V+ + D+ G ++ + + ++ ++ D + + +L L + Sbjct: 56 QAGDRVSVVRTTKDIPAGGSLSRDNTTDILVAKDESIHYLNWDQIDLAKSKYKLGSALPK 115 Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 ++ G+ + + +VD G + L +G+ G +KP D V V V Sbjct: 116 GSLVVGEMLIAKDKSVVDEGKALVGLALQEGQ------------YPGGLKPGDTVAVYHV 163 Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202 S +LS A D+D G T T+ + Sbjct: 164 GKDAGAPASGESGSSAGNRTLLS-----AQADVKDADGSSKGGEALSTGDRTLTVSVPAS 218 Query: 203 QAKALVAAQSVAKLSLVLRS 222 +A+AL A SV ++++VL Sbjct: 219 EAQALAQASSVGEVAVVLVP 238 >gi|312199830|ref|YP_004019891.1| SAF domain protein [Frankia sp. EuI1c] gi|311231166|gb|ADP84021.1| SAF domain protein [Frankia sp. EuI1c] Length = 287 Score = 38.3 bits (88), Expect = 1.2, Method: Composition-based stats. Identities = 35/232 (15%), Positives = 75/232 (32%), Gaps = 32/232 (13%) Query: 13 GVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFP 72 +F ++ ++++ L + + + +K DL G VV+ L V Sbjct: 47 LIFGILIVLVSVVLGARLFATADRTSAW--------VAAKADLPAGHVVSAGDLVTVR-- 96 Query: 73 EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAA 132 + D + ++E+ G + P+ GD I ++ L Sbjct: 97 -AQLSDATAGRYYPGRRLKEVVGGTLARPVGAGDLISGSDFAGPDTA--ATRL------- 146 Query: 133 TMDISISSAVGGMIKPNDHVDVVMVRSLSE---------RKPTVTVVLSNIRVIAIDHNI 183 + I + + + P DHVDV + ++ + + + A + Sbjct: 147 -VPIVVQAGRLPDLAPGDHVDVYVFQASGAVGAGDASSGTGGSGGTGNATGQSTATGQST 205 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQ-SVAKLSLVLRSIADLNPSSSEDS 234 + G+ A + + + L + + SL LR D + S Sbjct: 206 GVGTPAVGGAGAEVLVL-HDVEFLGQQRIASGDRSLTLRVPVDAAIRAVAAS 256 >gi|303324285|ref|XP_003072130.1| HEAT repeat containing protein [Coccidioides posadasii C735 delta SOWgp] gi|240111840|gb|EER29985.1| HEAT repeat containing protein [Coccidioides posadasii C735 delta SOWgp] Length = 2003 Score = 38.0 bits (87), Expect = 1.2, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 17/145 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM----VVTPNILE 67 G+ ++ AG + L S ++ I + ++ + +G + P ++ Sbjct: 1832 LGLASVAAGCLRSLLHSTPRSSVDDAIARFIFPRLIAFVAG--IPLGTDGVPPIDPENIK 1889 Query: 68 --WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI---RLEKLVDRGN---- 118 V V I PNAM L L++ +G P+ +L++ Sbjct: 1890 SSIVQTLVSCVGSAAIATGATPNAMALLIPALLKRAQGEGRPVYKETATRLLELAQVDQV 1949 Query: 119 --GGLSSLLPKGKRAATMDISISSA 141 ++ + G RA T +I S+ Sbjct: 1950 SFRNFAAGMDPGLRALTEEILRSTG 1974 >gi|163733144|ref|ZP_02140588.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter litoralis Och 149] gi|161393679|gb|EDQ18004.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter litoralis Och 149] Length = 140 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 9/73 (12%), Positives = 24/73 (32%), Gaps = 10/73 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F V++ + ++ + + I + + + M ++ G R + Sbjct: 18 FAEVVVPAKTIRANATISASDITLKP----------IKNENAYSLMADVVGQEARTTLYA 67 Query: 105 GDPIRLEKLVDRG 117 G PI + + Sbjct: 68 GRPILFDDVGPPA 80 >gi|320037142|gb|EFW19080.1| HEAT repeat protein [Coccidioides posadasii str. Silveira] Length = 2050 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 52/145 (35%), Gaps = 17/145 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGM----VVTPNILE 67 G+ ++ AG + L S ++ I + ++ + +G + P ++ Sbjct: 1879 LGLASVAAGCLRSLLHSTPRSSVDDAIARFIFPRLIAFVAG--IPLGTDGVPPIDPENIK 1936 Query: 68 --WVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI---RLEKLVDRGN---- 118 V V I PNAM L L++ +G P+ +L++ Sbjct: 1937 SSIVQTLVSCVGSAAIATGATPNAMALLIPALLKRAQGEGRPVYKETATRLLELAQVDQV 1996 Query: 119 --GGLSSLLPKGKRAATMDISISSA 141 ++ + G RA T +I S+ Sbjct: 1997 SFRNFAAGMDPGLRALTEEILRSTG 2021 >gi|167763885|ref|ZP_02436012.1| hypothetical protein BACSTE_02266 [Bacteroides stercoris ATCC 43183] gi|167698001|gb|EDS14580.1| hypothetical protein BACSTE_02266 [Bacteroides stercoris ATCC 43183] Length = 347 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 10/90 (11%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 IA + + + ++ K + + L G ++T + + G Sbjct: 264 IAEHWLGREELYIDPAVSAAKVKLERSIATNKALHPGDIITEEDIHL-------LSPG-- 314 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 D + ++ G VR I + + I Sbjct: 315 -DGFKWAERDKVVGRRVRKEIPRNEIIYPS 343 >gi|225850284|ref|YP_002730518.1| putative flagellar protein FlgA [Persephonella marina EX-H1] gi|225645553|gb|ACO03739.1| putative flagellar protein FlgA [Persephonella marina EX-H1] Length = 312 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 27/72 (37%), Gaps = 8/72 (11%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K V+ +K + G ++T + ++ + ++++ G ++ I Sbjct: 183 KLRRVIAAKRYIKKGEIITEEDIRFIKTDKNV--------RKPFTDIKDIVGSTAKIDIS 234 Query: 104 KGDPIRLEKLVD 115 + D I ++ Sbjct: 235 ENDVITERMVIP 246 >gi|227546443|ref|ZP_03976492.1| cation transport ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|322689956|ref|YP_004209690.1| hypothetical protein BLIF_1777 [Bifidobacterium longum subsp. infantis 157F] gi|227213100|gb|EEI80979.1| cation transport ATPase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|320461292|dbj|BAJ71912.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 189 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ G+ A+ V + ++++ + G ++ Sbjct: 4 ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 49 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + + P A ++ Q + V+R Sbjct: 146 NVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189 >gi|332982134|ref|YP_004463575.1| N-acetylneuraminate synthase [Mahella australiensis 50-1 BON] gi|332699812|gb|AEE96753.1| N-acetylneuraminate synthase [Mahella australiensis 50-1 BON] Length = 348 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 +K D+ G V+T ++L + G +P + + G ++ I K DPI Sbjct: 296 AKVDIPNGTVITADMLAI-------LRPGI---GLKPKYIDIVIGRAAKMDIKKNDPITW 345 Query: 111 EKL 113 +K+ Sbjct: 346 DKI 348 >gi|238764388|ref|ZP_04625338.1| Flagella basal body P-ring formation protein flgA [Yersinia kristensenii ATCC 33638] gi|238697414|gb|EEP90181.1| Flagella basal body P-ring formation protein flgA [Yersinia kristensenii ATCC 33638] Length = 233 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G +TP +E + + G + + G + I G P+ Sbjct: 113 VAARQLTAGAKITPQDIEMKQGRLDTLPPGALLEPSFA------QGAVSLRQINAGQPLT 166 Query: 110 LEKL 113 L Sbjct: 167 RNML 170 >gi|150260253|ref|ZP_01916981.1| lateral flagellar P-ring addition protein [Yersinia pestis CA88-4125] gi|162419782|ref|YP_001604851.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Angola] gi|165925092|ref|ZP_02220924.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165939099|ref|ZP_02227651.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|166008979|ref|ZP_02229877.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166211927|ref|ZP_02237962.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|167418801|ref|ZP_02310554.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425137|ref|ZP_02316890.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167466345|ref|ZP_02331049.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis FV-1] gi|229837404|ref|ZP_04457567.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Pestoides A] gi|229840617|ref|ZP_04460776.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842832|ref|ZP_04462984.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. India 195] gi|229900941|ref|ZP_04516065.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Nepal516] gi|294502784|ref|YP_003566846.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Z176003] gi|149289661|gb|EDM39738.1| lateral flagellar P-ring addition protein [Yersinia pestis CA88-4125] gi|162352597|gb|ABX86545.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Angola] gi|165913055|gb|EDR31680.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|165923292|gb|EDR40443.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165992318|gb|EDR44619.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166206673|gb|EDR51153.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|166962795|gb|EDR58816.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167055900|gb|EDR65681.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229682280|gb|EEO78372.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Nepal516] gi|229690099|gb|EEO82156.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. India 195] gi|229696983|gb|EEO87030.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229705527|gb|EEO91537.1| flagellar basal-body P-ring formation protein flgA [Yersinia pestis Pestoides A] gi|262360816|gb|ACY57537.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis D106004] gi|262364761|gb|ACY61318.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis D182038] gi|294353243|gb|ADE63584.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Z176003] gi|320016715|gb|ADW00287.1| Flagellar basal-body P-ring formation proteinflgA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 282 Score = 38.0 bits (87), Expect = 1.3, Method: Composition-based stats. Identities = 28/141 (19%), Positives = 52/141 (36%), Gaps = 19/141 (13%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 142 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 195 Query: 95 GVLVRVPILKGDPIRLEK-----LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPN 149 G+ ++ I + + + LV R L G A + I+ + G Sbjct: 196 GLTIKRRIRQLQAVIPSQLEQPVLVTRNQHVLMLAAQDGIEAQMLGIAQKNGRKG----- 250 Query: 150 DHVDVVMVRSLSERKPTVTVV 170 +++ V++LS + V Sbjct: 251 ---ELIKVKNLSSGRVVTATV 268 >gi|303327580|ref|ZP_07358021.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3] gi|302862520|gb|EFL85453.1| diguanylate cyclase/phosphodiesterase [Desulfovibrio sp. 3_1_syn3] Length = 755 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 36/176 (20%), Positives = 67/176 (38%), Gaps = 27/176 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVG-MV 60 K T MG ++ G+F LV G+I +R VS + + + + + L + +A+ Sbjct: 9 KRTYAMGFLIGGIF-LVCGLILLRQVSLQNERENALYLYDTVNQLRTLF-QRQIALDFQT 66 Query: 61 VTPNILEWVAFPEENVFD--------GFIDD--VHQPNAMQELD---GVLVRVPILKGDP 107 + + PE+ V + +P+ +L G L R L G+P Sbjct: 67 LRGVAVSIGHVPEKEVLPVLKEVNDNNAFLRMGLAKPDGSVDLVDISGDLHRNVNLAGEP 126 Query: 108 IRLEKLVDRGNGGLSSL----LPKGKRAA---TMDISISSAVGGMIKPNDHVDVVM 156 + L G LS + L G A + + + V G++ + D+ + Sbjct: 127 FFQKALA--GEAALSGVRRNPLGPG--AVVYCAVPVHGENGVSGVLVAVNAADIFL 178 >gi|290965452|dbj|BAI82252.1| merozoite surface protein 1 [Plasmodium fieldi] Length = 1832 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 39/104 (37%), Gaps = 24/104 (23%) Query: 127 KGKRAAT--MDISISSAVGGMIKPN--DHVD------------VVMVRSLSERKPTVTVV 170 G +A T ++S SS G + P+ + D + L E + + V+ Sbjct: 222 DGAQAVTGSTEVSQSSGSAGSVSPSAPESYDQKKPIFQAMYNVIFYTNQLEEAQKLIEVL 281 Query: 171 LSNIRVI-------AI-DHNIDSDERVLVGSTATLELTPMQAKA 206 ++V+ A+ D ++ + T LTP Q +A Sbjct: 282 EKRVKVLKEHKSIKALLDQVATEKGKLPSDNPTTANLTPEQTEA 325 >gi|260466618|ref|ZP_05812806.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium opportunistum WSM2075] gi|259029624|gb|EEW30912.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium opportunistum WSM2075] Length = 182 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 62/177 (35%), Gaps = 18/177 (10%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + T L+ +V+G A + Q+ I N A VLI + G + Sbjct: 11 RRTALVLALVTGGMPAFAQESTNQSAGQSANQSATQIASNQAVGEVVLIPNRVIYPGETI 70 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDR 116 L+ V + G +EL G + + +L G IR LV++ Sbjct: 71 ELTALKQV-----TLIPGKHKPEAMATVAEELQGKVAKRTLLPGRYIPSTAIRDAWLVEQ 125 Query: 117 GNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G + G T+ + + ++P D++ VR+ K V+++ Sbjct: 126 GAAVQVFFISGG---LTISATAVT-----LQPGSAGDLIKVRNSDSGKILSGTVMAD 174 >gi|291382926|ref|XP_002707999.1| PREDICTED: N-acetylneuraminic acid phosphate synthase [Oryctolagus cuniculus] Length = 359 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 11/70 (15%) Query: 49 LISKGDLAVGMVVTPNILEW-VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 +++K + G V+T ++L V P+ + L G V V I + D Sbjct: 295 VVAKVRIPEGTVLTLDMLTVKVGEPKGCAPEDIFT----------LVGKKVLVTIEEDDT 344 Query: 108 IRLEKLVDRG 117 I E + + G Sbjct: 345 ILEEAVENHG 354 >gi|256396011|ref|YP_003117575.1| SAF domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256362237|gb|ACU75734.1| SAF domain protein [Catenulispora acidiphila DSM 44928] Length = 222 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 15/91 (16%), Positives = 37/91 (40%), Gaps = 5/91 (5%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 ++A ++ V V + VL+ + VG V++ + L+ V + G Sbjct: 38 VVAGSMLVLGAVVVGAVAFVKVGGRVPVLVVGAPVQVGQVISADDLKVVD-----IAPGT 92 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + V + +++ G VP++ + + + Sbjct: 93 LAHVAFADEEKQVVGQPAAVPLVPDEVLTWQ 123 >gi|110677664|ref|YP_680671.1| flagellar basal body P-ring biosynthesis protein FlgA [Roseobacter denitrificans OCh 114] gi|109453780|gb|ABG29985.1| flagella basal body P-ring formation protein FlgA, putative [Roseobacter denitrificans OCh 114] Length = 140 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 F V++ + +T + + I + + M ++ G R + Sbjct: 18 FAEVVVPAKTIRANATITASDITLKP----------IQNENAYTLMADVVGQEARTTLYA 67 Query: 105 GDPIRLEKLVDRG 117 G PI + + Sbjct: 68 GRPILFDDIGPPA 80 >gi|295837162|ref|ZP_06824095.1| membrane protein [Streptomyces sp. SPB74] gi|295826378|gb|EFG64805.1| membrane protein [Streptomyces sp. SPB74] Length = 241 Score = 38.0 bits (87), Expect = 1.4, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 74/200 (37%), Gaps = 35/200 (17%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE-NVFDGFIDDVHQPNAMQELDGVLVR 99 N ++V+ + D+ G ++ V E+ ++ D + + +L L + Sbjct: 54 NAGDRVSVVRTTKDVPAGGTLSRENTTDVLVAEDESIHYLRWDQIDLAKSKYKLRSALPQ 113 Query: 100 VPILKGDPIRLEK--LVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMV 157 ++ G+ + + +VD+G + L +G+ G +KP D V V V Sbjct: 114 GSLVVGEMLIGKDKSVVDQGKALVGLALKEGQ------------YPGGLKPGDTVAVYHV 161 Query: 158 RS--------LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVG-------STATLELTPM 202 S +LS A D+D G T T+ + Sbjct: 162 GKDAGAPAAGESGSSGGDRTLLS-----AAADVKDADGSSKGGEALSTGDRTLTVSVPAG 216 Query: 203 QAKALVAAQSVAKLSLVLRS 222 +A+AL A SV ++++VL Sbjct: 217 EAQALAQASSVGEVAVVLVP 236 >gi|293604999|ref|ZP_06687395.1| flagella basal body P-ring formation protein FlgA [Achromobacter piechaudii ATCC 43553] gi|292816604|gb|EFF75689.1| flagella basal body P-ring formation protein FlgA [Achromobacter piechaudii ATCC 43553] Length = 238 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ ++ G +TP+ L ++ G I D Q + G+ I G P+ Sbjct: 117 YVASRMISAGQALTPDDLAPRDGDLVSLPPGAITDP------QAVVGMSAAFRINAGQPV 170 Query: 109 RLEKL 113 R L Sbjct: 171 RSSSL 175 >gi|288960395|ref|YP_003450735.1| N-acylneuraminate-9-phosphate synthase [Azospirillum sp. B510] gi|288912703|dbj|BAI74191.1| N-acylneuraminate-9-phosphate synthase [Azospirillum sp. B510] Length = 351 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ D+ G ++P + ++ GF P + ++ G L + +G+P+ Sbjct: 290 VVA--DVEAGESLSPTNVR-------SIRPGF---GMAPGHLPDVLGRLAIRRLKRGEPL 337 Query: 109 RLEKLVDRGNG 119 + L G Sbjct: 338 SWDMLAPPSEG 348 >gi|2275162|gb|AAB81414.1| FlgA [Sinorhizobium meliloti] Length = 168 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A++ +A L+SP E +I K + G + ++LE V + Sbjct: 21 AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 71 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + DG++ ++ E+DG++ + +L G I L ++ Sbjct: 72 LRDGYVH------SIDEVDGMVTKRTLLPGRVILASALREQ 106 >gi|24374764|ref|NP_718807.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella oneidensis MR-1] gi|24349430|gb|AAN56251.1|AE015762_8 flagellar basal-body P-ring formation protein FlgA, putative [Shewanella oneidensis MR-1] Length = 235 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P +E + ++ Q + + +L GV V+ + K + Sbjct: 114 PVVVATEPLAPGELISPTQVEIRYVDQNSL------RGMQFSDINQLSGVRVKRRVAKNN 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PIFANNL 174 >gi|318604248|emb|CBY25746.1| flagellar basal-body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica Y11] Length = 234 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I D E+ Sbjct: 94 EVAVTVKPDIYLPVWVAKNTLERGKLVAPDDIELKKKNISTAQGGYITDP------DEIV 147 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G V+ I + +L Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP 169 >gi|289704896|ref|ZP_06501313.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58] gi|289558392|gb|EFD51666.1| hypothetical protein HMPREF0569_0663 [Micrococcus luteus SK58] Length = 747 Score = 38.0 bits (87), Expect = 1.5, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ L G +T + + + G QPN + L G + + +GD Sbjct: 405 LVAARPLQAGATITADDVTVKS-------PG---RGLQPNELPRLVGRTLHREMAEGDFF 454 Query: 109 RLEKLVD 115 L D Sbjct: 455 FAGDLTD 461 >gi|332533181|ref|ZP_08409050.1| flagellar basal-body P-ring formation protein FlgA [Pseudoalteromonas haloplanktis ANT/505] gi|332037463|gb|EGI73917.1| flagellar basal-body P-ring formation protein FlgA [Pseudoalteromonas haloplanktis ANT/505] Length = 235 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPI 102 + V+++ +L G V+T + L P V ++DD L G + I Sbjct: 110 VEMAPVVVATANLTRGEVITKSHLSIEMKPTHFVRIQYLDDPTM------LIGSRSKRNI 163 Query: 103 LKGDPIRLEKL 113 G P+ L ++ Sbjct: 164 RSGMPVLLNQI 174 >gi|148270381|ref|YP_001244841.1| SAF domain-containing protein [Thermotoga petrophila RKU-1] gi|147735925|gb|ABQ47265.1| SAF domain [Thermotoga petrophila RKU-1] Length = 280 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K NV++ K ++ VG V+ + ++NVF+ + + E+ G + R + Sbjct: 150 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 203 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127 +G + + + D + ++P Sbjct: 204 EGTVLTADMVKDPPDVVKGQVVPA 227 >gi|238785501|ref|ZP_04629484.1| Flagella basal body P-ring formation protein flgA [Yersinia bercovieri ATCC 43970] gi|238713603|gb|EEQ05632.1| Flagella basal body P-ring formation protein flgA [Yersinia bercovieri ATCC 43970] Length = 234 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ LA G +T +E + + G + + H G + I G P+ Sbjct: 113 VVATRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPHFA------QGAVSLRQINAGQPL 166 Query: 109 RLEKL 113 L Sbjct: 167 TRNML 171 >gi|46190327|ref|ZP_00121647.2| COG2217: Cation transport ATPase [Bifidobacterium longum DJO10A] gi|189440534|ref|YP_001955615.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum DJO10A] gi|189428969|gb|ACD99117.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum DJO10A] Length = 189 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 63/224 (28%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ GI A+ V + ++++ + G ++ Sbjct: 4 ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 49 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + + P A ++ Q + V+R Sbjct: 146 NVGKPDATGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189 >gi|146296447|ref|YP_001180218.1| hypothetical protein Csac_1426 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410023|gb|ABP67027.1| hypothetical protein Csac_1426 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 194 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 40/106 (37%), Gaps = 21/106 (19%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK I ++ + A++ +++ +S I + ++K + G + Sbjct: 1 MKNR---VIKLAVIPAVLVALLSYIFISRQ------------TNMIQIPVAKNFIHQGEI 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + + + ++ P + G I + ++L G V + GD Sbjct: 46 IDDSDITFLKLPSYALPQGVIKE------KEKLVGKRAGVTRVAGD 85 >gi|147900772|ref|NP_001087593.1| N-acetylneuraminic acid synthase [Xenopus laevis] gi|51513381|gb|AAH80398.1| MGC84329 protein [Xenopus laevis] Length = 359 Score = 38.0 bits (87), Expect = 1.6, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++K + G V+T N+L GF P + +L+G ++ I + D + Sbjct: 295 VVAKVKIPAGTVLTLNMLTVKV----AEPRGF-----PPEEIYDLEGKTLKREIEEDDSV 345 Query: 109 RLEKL 113 E + Sbjct: 346 TEEAI 350 >gi|323706341|ref|ZP_08117906.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534303|gb|EGB24089.1| N-acetylneuraminate synthase [Thermoanaerobacterium xylanolyticum LX-11] Length = 347 Score = 37.6 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +I+ D+ G ++T +L P + F D L G R+ ILK I Sbjct: 292 IIAAKDIPSGSIITEEMLTTKR-PGTGLPPKFFD---------YLIGKKARIHILKDTII 341 >gi|119961944|ref|YP_948401.1| hypothetical protein AAur_2686 [Arthrobacter aurescens TC1] gi|119948803|gb|ABM07714.1| conserved hypothetical protein [Arthrobacter aurescens TC1] Length = 214 Score = 37.6 bits (86), Expect = 1.6, Method: Composition-based stats. Identities = 38/209 (18%), Positives = 71/209 (33%), Gaps = 35/209 (16%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + I V V A ++G+IA + + V ++ D+AVG VVT L Sbjct: 22 LLIGVLLVLASISGVIA--------------LVGTADRTTQVYTAREDIAVGQVVTEADL 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 V ++V ++ + +G + + K LV + + G+ L Sbjct: 68 SIVKVRLDDVESSYVTVENGVA-----EGKVALQRVAKNQ------LVPQESLGVPDAL- 115 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVL---SNIRVIAIDHNI 183 ++ + V P VDV + S +L + I ++ Sbjct: 116 -NRKPVAIATEEELPVQ--AVPGARVDVWIAMPGSNSAFDEPQLLLPSAEIALMTPGSTA 172 Query: 184 DSDERVLVGSTATLELTPMQAKALVAAQS 212 + V + +T Q L+ AQ+ Sbjct: 173 FGSAKTTV---VMVLVTDEQMPKLLWAQA 198 >gi|307945667|ref|ZP_07661003.1| flagella basal body P-ring formation protein FlgA [Roseibium sp. TrichSKD4] gi|307771540|gb|EFO30765.1| flagella basal body P-ring formation protein FlgA [Roseibium sp. TrichSKD4] Length = 326 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 12/90 (13%), Positives = 31/90 (34%), Gaps = 1/90 (1%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + + + V L G V+ + P V + D Q + G+ + Sbjct: 183 HAQEMLEVTTLLQPLRSGQVLRLEDMTTTRLPRTKVPANAVTDPKQIAGLAARTGLRANM 242 Query: 101 PILKGDPIRLEKLVDRGNGGLSSLLPKGKR 130 P+++ D + + ++ ++ G + Sbjct: 243 PLVRNDFAKPVLISRGEKVSITYMVG-GMK 271 >gi|170022967|ref|YP_001719472.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis YPIII] gi|186896775|ref|YP_001873887.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis PB1/+] gi|51590923|emb|CAH22579.1| Putative flagella basal body P-ring formation protein [Yersinia pseudotuberculosis IP 32953] gi|169749501|gb|ACA67019.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis YPIII] gi|186699801|gb|ACC90430.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis PB1/+] Length = 272 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 185 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G+ ++ I + + +L Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQP 207 >gi|319781680|ref|YP_004141156.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317167568|gb|ADV11106.1| flagella basal body P-ring formation protein FlgA [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 175 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 36/167 (21%), Positives = 61/167 (36%), Gaps = 19/167 (11%) Query: 12 SGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAF 71 + V ALV G + Q+ I N A VLI + G + L+ V Sbjct: 15 ALVLALVTGTMPA-FAQESANQSANRIASNQAGGEVVLIPSRVIYPGETINLAALKQV-- 71 Query: 72 PEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD-----PIRLEKLVDRGNGGLSSLLP 126 + G +ELDG + + +L G IR LV++G + Sbjct: 72 ---TLVVGKHKPEAVATRAEELDGKVAKRTLLPGRYIPSAAIREAWLVEQGASVQIFFIA 128 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN 173 G T+ + + ++P D+V VR++ K V+++ Sbjct: 129 GG---LTISATAVT-----LQPGAAGDLVKVRNIDSGKILSGTVMAD 167 >gi|332710335|ref|ZP_08430283.1| N-acetylneuraminate synthase [Lyngbya majuscula 3L] gi|332350884|gb|EGJ30476.1| N-acetylneuraminate synthase [Lyngbya majuscula 3L] Length = 755 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L+ +L G V+T ++E + G QPN EL G L R GD Sbjct: 406 LVINCNLEPGQVITSEMIEVKS-------PG---KGLQPNRKTELIGQLARRRFKAGDFF 455 Query: 109 RLEKL 113 L Sbjct: 456 FPSDL 460 >gi|258511181|ref|YP_003184615.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477907|gb|ACV58226.1| hypothetical protein Aaci_1195 [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 238 Score = 37.6 bits (86), Expect = 1.7, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 70/185 (37%), Gaps = 32/185 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK + + V G+ + G+ A+ + + V+ +K + Sbjct: 1 MKRSAFLLTGV-GLAVIAGGLFAVGY-------------KLTTDTVPVITAKTYIPADTP 46 Query: 61 VTPNILEWVAFPEENVFD-GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 V P+ L P G I + Q L G + V + G+P+ + + + Sbjct: 47 VNPSELGTEQVPRMFARQMGAITNE------QSLAGRYLSVSAVPGEPLTMNMVATADD- 99 Query: 120 GLSSLLPKGKRA-----ATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNI 174 L +L+ + +A +D + +SA+ ++P D+ + + S + T L + Sbjct: 100 -LQALVTQYAQAHHVHGVLVDYAANSALANAVQPGQ--DIALAINPSGQNATPE--LYPV 154 Query: 175 RVIAI 179 V+A+ Sbjct: 155 HVLAV 159 >gi|119952317|ref|YP_949886.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1] gi|119951447|gb|ABM10357.1| hypothetical protein AAur_pTC10012 [Arthrobacter aurescens TC1] Length = 229 Score = 37.6 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 27/186 (14%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + + VL + G V+ + + + + + + + G Sbjct: 56 QAQGDRVEVLEVTKPVPAGQVIKAGDVHAIQV-------AGVPGAIKASDVDTVVGQRAA 108 Query: 100 VPILKGDPIRLEKLV-----DRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 +++G + E + G ++ LP G+ V G + D V+V Sbjct: 109 SGLVEGQILTPEAVTGDPLPGDGERLVALQLPPGR------------VPGGLAAGDVVNV 156 Query: 155 VMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGS-TATLELTPMQAKALVAAQSV 213 + V E T L +V+A + S G+ T+ + + + A + Sbjct: 157 LAV--PQEGAAASTNQLQEPQVLAEGARVQSVGSTAEGNKVVTVLVKDAVSDPVAAYSAA 214 Query: 214 AKLSLV 219 ++++V Sbjct: 215 GQVTIV 220 >gi|281412687|ref|YP_003346766.1| flagella basal body P-ring formation protein FlgA [Thermotoga naphthophila RKU-10] gi|281373790|gb|ADA67352.1| flagella basal body P-ring formation protein FlgA [Thermotoga naphthophila RKU-10] Length = 286 Score = 37.6 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K NV++ K ++ VG V+ + ++NVF+ + + E+ G + R + Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 209 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127 +G + + + D + ++P Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233 >gi|15964416|ref|NP_384769.1| flagellar basal body P-ring biosynthesis protein FlgA [Sinorhizobium meliloti 1021] gi|17380481|sp|Q52947|FLGA_RHIME RecName: Full=Flagellar protein flgA; Flags: Precursor gi|15073593|emb|CAC45235.1| Flagellar precursor transmembrane protein [Sinorhizobium meliloti 1021] Length = 168 Score = 37.6 bits (86), Expect = 1.8, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A++ +A L+SP E +I K + G + ++LE V + Sbjct: 21 AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 71 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + DG++ ++ E+DG++ + +L G I L ++ Sbjct: 72 LRDGYVR------SIDEVDGMVTKRTLLPGRVILASALREQ 106 >gi|301094568|ref|XP_002896389.1| CCR4-NOT transcription complex subunit, putative [Phytophthora infestans T30-4] gi|262109572|gb|EEY67624.1| CCR4-NOT transcription complex subunit, putative [Phytophthora infestans T30-4] Length = 2370 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 53/184 (28%), Gaps = 60/184 (32%) Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPT 166 P+ K+ G+G + P G+ V G + Sbjct: 1241 PLTPGKMKKPGDGFAPAGSPTGR----------EGVAGYGLG--------TSNTGAAAAE 1282 Query: 167 VTVV--------------LSNIRV-----IAIDHNIDSDERVLVGSTATL------ELTP 201 TV+ L N+ + +A+D I +V + T+ E+ Sbjct: 1283 STVIPNLASYVAVNPELPLRNVNLRRLVPLAVDRAIREVISPVVERSVTIACITTREVIL 1342 Query: 202 MQ------------AKALVAAQSVAKLSLV-----LRSIADLNPSSSEDSDVWDVQEEGK 244 A L+ A L+L+ LR+ + + S D Q+ Sbjct: 1343 KDFATECDDTKMRKAAHLMVASMSGSLALITAKEPLRNAIGTHLRALLPSSAGDPQQLEH 1402 Query: 245 EIQI 248 IQI Sbjct: 1403 VIQI 1406 >gi|325001320|ref|ZP_08122432.1| hypothetical protein PseP1_21279 [Pseudonocardia sp. P1] Length = 86 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%) Query: 39 TENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 + VL++ DLA G+ + P L A+P V Sbjct: 47 PDAADDRAGVLVAARDLAPGVPLEPADLTVTAWPPALVPA 86 >gi|225351088|ref|ZP_03742111.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225158544|gb|EEG71786.1| hypothetical protein BIFPSEUDO_02674 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 229 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 20/122 (16%) Query: 14 VFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPE 73 + A V +AM V+I+ +A G V+T + L P Sbjct: 40 LLAAVCAGLAMF--------AALQCVRLTISTQPVVIAAQPIAKGSVITADSLALRDLPY 91 Query: 74 ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAAT 133 + D + G++ +V + +G + S ++ +G Sbjct: 92 DKALRNVFHDCA------DAVGLIAQVDVAEGGIVTST------MARASPVVSEGYTVIE 139 Query: 134 MD 135 + Sbjct: 140 VR 141 >gi|153950687|ref|YP_001399630.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 31758] gi|152962182|gb|ABS49643.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 31758] Length = 272 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 132 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 185 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G+ ++ I + + +L Sbjct: 186 GLTIKRRIRQLQAVIPSQLEQP 207 >gi|153001478|ref|YP_001367159.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella baltica OS185] gi|151366096|gb|ABS09096.1| SAF domain protein [Shewanella baltica OS185] Length = 235 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P+ +E + ++ DD +L GV V+ + K + Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDN 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PILSNNL 174 >gi|170288993|ref|YP_001739231.1| flagella basal body P-ring formation protein FlgA [Thermotoga sp. RQ2] gi|170176496|gb|ACB09548.1| flagella basal body P-ring formation protein FlgA [Thermotoga sp. RQ2] Length = 286 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 6/84 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K NV++ K ++ VG V+ + ++NVF+ + + E+ G + R + Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KKNVFEIY---GEPFFDVSEVVGKISRRYLK 209 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127 +G + + + D + ++P Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233 >gi|301758268|ref|XP_002914976.1| PREDICTED: sialic acid synthase-like [Ailuropoda melanoleuca] gi|281341260|gb|EFB16844.1| hypothetical protein PANDA_002918 [Ailuropoda melanoleuca] Length = 359 Score = 37.6 bits (86), Expect = 1.9, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 34/96 (35%), Gaps = 9/96 (9%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 + R + Q AK +++K + G V+T ++L G+ Sbjct: 268 LVERAMGSPTKQLLPCEIACNAKLGKSVVAKVKIPEGTVLTLDMLTVKV----GEPKGY- 322 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 P + L G V V + + D I E + + G Sbjct: 323 ----PPEDIFNLVGKKVLVTVEEDDTIMEESVENHG 354 >gi|158292197|ref|XP_313756.4| AGAP004460-PA [Anopheles gambiae str. PEST] gi|157017321|gb|EAA09258.5| AGAP004460-PA [Anopheles gambiae str. PEST] Length = 377 Score = 37.6 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 9/89 (10%) Query: 21 IIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 + A++ + PHH Q E K L+ DL G V+T + ++ V + Sbjct: 294 LAALKEIDPHHRQLLECERPCYNKLGKSLVYASDLNCGTVLTESNVQVK------VSE-- 345 Query: 81 IDDVHQPNAMQELDGVLVRVPILKGDPIR 109 P + G V+ + K DPI Sbjct: 346 -PKGLSPRLYDSVVGRTVKCAVFKDDPIL 373 >gi|332162905|ref|YP_004299482.1| flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325667135|gb|ADZ43779.1| Flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863355|emb|CBX73478.1| hypothetical protein YEW_ES20730 [Yersinia enterocolitica W22703] Length = 234 Score = 37.6 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I D E+ Sbjct: 94 EVAVTVKPDIYLPVWVAKNTLERGKLVVPDDIELKKKNISTAQGGYITDP------DEIV 147 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G V+ I + +L Sbjct: 148 GFTVKRRIRNLQVVIPSQLEQP 169 >gi|170741837|ref|YP_001770492.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] gi|168196111|gb|ACA18058.1| flagella basal body P-ring formation protein FlgA [Methylobacterium sp. 4-46] Length = 176 Score = 37.6 bits (86), Expect = 2.0, Method: Composition-based stats. Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + + G ++ +L +FP F +A + G + R +L G+P+ Sbjct: 52 VPAVTIYPGDMIKETMLREQSFP-----PTFRARAAVIDAPLAIVGRVARRTLLPGEPVP 106 Query: 110 LEKLVDR 116 + + D Sbjct: 107 VNAVDDP 113 >gi|145596968|ref|YP_001161265.1| SAF domain-containing protein [Salinispora tropica CNB-440] gi|145306305|gb|ABP56887.1| SAF domain [Salinispora tropica CNB-440] Length = 219 Score = 37.6 bits (86), Expect = 2.1, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 62/151 (41%), Gaps = 12/151 (7%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVF 77 +A+ L++ + + + A + ++ + VG VV+ + L V V Sbjct: 30 GLLGLAVLLIALGGLGSAFAVNAVRATGSYLAVA-RPVEVGRVVSADDLVTVQ-----VA 83 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 G ++ G +V ++ G + +E+L D+ LL G++ ++ + Sbjct: 84 GGAGLSPVPAGQQGDVVGKRAKVSLVPGTLLTMEQLTDKP------LLAPGQQQLSVGLE 137 Query: 138 ISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 ++ A + P D V +V + ++ + T T Sbjct: 138 LAQAPARRLHPGDKVSLVSTPAGNDDRSTTT 168 >gi|289178132|gb|ADC85378.1| hypothetical protein BIF_01377 [Bifidobacterium animalis subsp. lactis BB-12] Length = 223 Score = 37.2 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 42/217 (19%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R M + +S AL + + L + +++ DL G+V+ Sbjct: 37 RHMLLALSVGVALFCTLQCVALATATRQA---------------VVAARDLDAGLVIATG 81 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 +E V P+ + + + G++ + I KGD + + + Sbjct: 82 DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDVGELPQ------ 129 Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180 +P+ + + +G P V++ + + P VV S+ V+A Sbjct: 130 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 183 Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKL 216 D+ GST T + ++ ++A ++AAQ L Sbjct: 184 -QPRLDD---TGSTVTQMAMSAVEALQVLAAQEHGTL 216 >gi|291516490|emb|CBK70106.1| Flagellar basal body P-ring biosynthesis protein [Bifidobacterium longum subsp. longum F8] Length = 189 Score = 37.2 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 27/224 (12%), Positives = 62/224 (27%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ GI A+ V K ++++ + G ++ Sbjct: 4 ALRRLTAALCVGLAVLFGIEAVLAV---------------VKTEPMVVAARSIRRGDIIL 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 49 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + P A ++ Q + V+R Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189 >gi|283850831|ref|ZP_06368117.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] gi|283573754|gb|EFC21728.1| N-acylneuraminate-9-phosphate synthase [Desulfovibrio sp. FW1012B] Length = 371 Score = 37.2 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 18/112 (16%) Query: 15 FALVAGII-----AMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWV 69 FA +AG++ AMR+ H E AK L+ DL G V+ P L Sbjct: 261 FAAMAGMVREAEAAMRVARKHLFPGE---AAAAAKLRKSLVFARDLPAGHVLGPEDLTAK 317 Query: 70 AFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 P + G + + + +P+ E+L + + Sbjct: 318 ----------CPGTGLSPVLGDAVAGCRLLAKVRQDEPVAWERLAAPESSDV 359 >gi|15644289|ref|NP_229341.1| flagellar protein FlgA, putative [Thermotoga maritima MSB8] gi|4982108|gb|AAD36608.1|AE001800_18 flagellar protein FlgA, putative [Thermotoga maritima MSB8] Length = 286 Score = 37.2 bits (85), Expect = 2.2, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K NV++ K ++ VG V+ + + NVF+ + + E+ G + R + Sbjct: 156 KERNVVVLKRNINVGDVIKEEDVRLE---KRNVFEIY---GEPFFDVSEVVGKISRRYLK 209 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127 +G + + + D + ++P Sbjct: 210 EGTVLTADMVKDPPDVVKGQVVPA 233 >gi|169825596|ref|YP_001695771.1| hypothetical protein Bsph_p184 [Lysinibacillus sphaericus C3-41] gi|168994873|gb|ACA42412.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 316 Score = 37.2 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 39/101 (38%), Gaps = 16/101 (15%) Query: 1 MKL---TRLMGIVVSGVFA--LVAGIIAMRLVSPHHVQTEEVITENPAKFIN-------- 47 MK+ T+ + I S A L+ +A + +V+ +E + +N + Sbjct: 1 MKIRFVTKKLIIAASLGAAAMLLISGVAFYFLYKSNVEKQEELRQNYKDKLAELEYTTEQ 60 Query: 48 ---VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 V D+ G ++ ++++ P+ V + DV Sbjct: 61 SELVYTLNTDVDKGQLIHKSMVQPSLVPKNAVPADAMTDVQ 101 >gi|229492883|ref|ZP_04386679.1| SAF domain protein [Rhodococcus erythropolis SK121] gi|229320157|gb|EEN85982.1| SAF domain protein [Rhodococcus erythropolis SK121] Length = 234 Score = 37.2 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 34/214 (15%), Positives = 69/214 (32%), Gaps = 34/214 (15%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 + +VV V ++A + AMR +VL+ D+ G V+ L Sbjct: 50 IALVVVAVIGMLAAVSAMR------------------ATTDVLVLARDVQQGQVIESKDL 91 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + + G+ + G + + D+ G Sbjct: 92 TVKTVNVD-----ADLGALSAGERGRVIGMSAGTRLPAGSVLMPAAVTDQVVPG------ 140 Query: 127 KGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSD 186 +G + + I P D + VV + P V + +V ++ ++ Sbjct: 141 EGLTMVGITVGYPHLPSEAIVPGDMIRVVDTPREGDDPPVTGPVNTKAQVYSMTVIAEAG 200 Query: 187 ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL 220 E +T L + +A + A + ++S+VL Sbjct: 201 E-----TTLNLLVPEAEANWVAARAATKRVSIVL 229 >gi|222447129|pdb|3FRN|A Chain A, Crystal Structure Of Flagellar Protein Flga From Thermotoga Maritima Msb8 Length = 278 Score = 37.2 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 36/84 (42%), Gaps = 6/84 (7%) Query: 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPIL 103 K NV++ K ++ VG V+ + + NVF+ + + E+ G + R + Sbjct: 141 KERNVVVLKRNINVGDVIKEEDVRLE---KRNVFEIY---GEPFFDVSEVVGKISRRYLK 194 Query: 104 KGDPIRLEKLVDRGNGGLSSLLPK 127 +G + + + D + ++P Sbjct: 195 EGTVLTADMVKDPPDVVKGQVVPA 218 >gi|73538108|ref|YP_298475.1| Altronate dehydratase [Ralstonia eutropha JMP134] gi|72121445|gb|AAZ63631.1| Altronate dehydratase [Ralstonia eutropha JMP134] Length = 507 Score = 37.2 bits (85), Expect = 2.3, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 41/109 (37%), Gaps = 5/109 (4%) Query: 47 NVLISKGDLAVGMVVTPNILEWV-AFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILK 104 NVLI++GDLA+G ++ L P + + I + G + I+ Sbjct: 14 NVLIARGDLALGQQLSDPALRVRAQVPAGHKIAASAIASGTPVRKYDTVIG-VASRDIVA 72 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAAT-MDISISSAVGGMIKPNDHV 152 G+ + L + + RA + + + G ++P+ V Sbjct: 73 GEHVHSHNL-KLVDFYRDPAFCQDVRAVEYVPEAERATFMGFVRPDGRV 120 >gi|242071455|ref|XP_002451004.1| hypothetical protein SORBIDRAFT_05g022450 [Sorghum bicolor] gi|241936847|gb|EES09992.1| hypothetical protein SORBIDRAFT_05g022450 [Sorghum bicolor] Length = 974 Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 160 LSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGST--ATLE--LTPMQAKALVAAQSVAK 215 + + ++++A+D I + V T TLE L+ A+AL A + Sbjct: 269 DDGEGNFSAIEVEAVQLLAMDQIISPEAAVEKDKTESMTLEPNLSREDARALSNANAAGS 328 Query: 216 LSL 218 SL Sbjct: 329 CSL 331 >gi|20559814|gb|AAM27589.1|AF498403_8 ORF_8; similar to NeuB family [Pseudomonas aeruginosa] Length = 361 Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 + L SP+ A V ++ D+ GM++T + L G Sbjct: 286 VALGSPYKAPQPSEWDTRQAARQQV-VAARDIEAGMIITRDDLTTAR-------SGH--- 334 Query: 84 VHQPNAMQELDGVLVRVPILKGD 106 P ++ EL G + L G+ Sbjct: 335 GLPPTSLWELVGSTSKRAFLAGE 357 >gi|170682474|ref|YP_001742369.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli SMS-3-5] gi|170520192|gb|ACB18370.1| lateral flagellar P-ring addition protein LfgA [Escherichia coli SMS-3-5] Length = 245 Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + Sbjct: 96 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 149 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + + G+ + + G PI E+LV Sbjct: 150 RDVLMELDDAIGLSSKHALQPGRPITKEELVSP 182 >gi|146276521|ref|YP_001166680.1| PII uridylyl-transferase [Rhodobacter sphaeroides ATCC 17025] gi|145554762|gb|ABP69375.1| metal dependent phosphohydrolase [Rhodobacter sphaeroides ATCC 17025] Length = 930 Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 43/114 (37%), Gaps = 11/114 (9%) Query: 143 GGMIKPNDHV---DVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL 199 G+I P + + + L+E R IA+ ++ + T E Sbjct: 16 SGLILPRSRIIDPEALTRSILAEIDAVSPTDPKAARAIAVRQMTEAKAAGNRALSETFEA 75 Query: 200 TPMQAKALVAAQSV---AKLSLVLRSIADL-----NPSSSEDSDVWDVQEEGKE 245 P +A+ L+ AQ+V ++ LR + NP+ +E V V G+ Sbjct: 76 RPREARGLIRAQAVLTDGLVTTALRVACERLHPLPNPTEAERVAVLAVGGYGRA 129 >gi|108807169|ref|YP_651085.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Antiqua] gi|108812487|ref|YP_648254.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Nepal516] gi|145598614|ref|YP_001162690.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Pestoides F] gi|108776135|gb|ABG18654.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|108779082|gb|ABG13140.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Antiqua] gi|145210310|gb|ABP39717.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides F] Length = 251 Score = 37.2 bits (85), Expect = 2.4, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 131 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 184 Query: 110 LEKL 113 L Sbjct: 185 RNML 188 >gi|292489137|ref|YP_003532024.1| flagella basal body P-ring formation protein FlgA [Erwinia amylovora CFBP1430] gi|292900256|ref|YP_003539625.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291200104|emb|CBJ47230.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291554571|emb|CBA22188.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora CFBP1430] gi|312173295|emb|CBX81550.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora ATCC BAA-2158] Length = 234 Score = 37.2 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++K +L G V+ + +E A ++ G + D++Q + G + G PI Sbjct: 112 VAKKNLPAGSVIRADDIETHAGSLDHQPAGILFDINQ------IVGQTTTRALNAGSPIV 165 Query: 110 LEKL 113 +L Sbjct: 166 QNQL 169 >gi|157283957|ref|YP_001468225.1| SAF domain-containing protein [Kineococcus radiotolerans SRS30216] gi|151363099|gb|ABS06101.1| SAF domain protein [Kineococcus radiotolerans SRS30216] Length = 252 Score = 37.2 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 43/134 (32%), Gaps = 8/134 (5%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQEL----DGVLVRVPI 102 +VL D+ G +T L + Q + +G L+ + Sbjct: 90 DVLALARDVPAGQKITAEDLRVAEVNGSGFSAVIKEHADQVVGSTAISSLPEGALLTNKM 149 Query: 103 LKGDPIRLEKLVDRGN----GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 + DPI V G G + S G+R A + + + + V+ +V Sbjct: 150 YQDDPIPEPGNVIVGASLKPGSVPSDAQPGRRVAVWKVGVVNGNAPVADAEQIVESALVT 209 Query: 159 SLSERKPTVTVVLS 172 +S +LS Sbjct: 210 EVSTDVAGGNTLLS 223 >gi|22126394|ref|NP_669817.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis KIM 10] gi|45441413|ref|NP_992952.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|162419453|ref|YP_001606469.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis Angola] gi|165926043|ref|ZP_02221875.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165938691|ref|ZP_02227246.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|166010841|ref|ZP_02231739.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166210809|ref|ZP_02236844.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|167401018|ref|ZP_02306521.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420243|ref|ZP_02311996.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425844|ref|ZP_02317597.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167469716|ref|ZP_02334420.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis FV-1] gi|270486649|ref|ZP_06203723.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|294504034|ref|YP_003568096.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis Z176003] gi|21959381|gb|AAM86068.1|AE013854_4 putative flagella basal body P-ring formation protein [Yersinia pestis KIM 10] gi|45436274|gb|AAS61829.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|162352268|gb|ABX86216.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Angola] gi|165913305|gb|EDR31927.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. IP275] gi|165922247|gb|EDR39424.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. F1991016] gi|165990185|gb|EDR42486.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. E1979001] gi|166207989|gb|EDR52469.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. B42003004] gi|166961938|gb|EDR57959.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049407|gb|EDR60815.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055243|gb|EDR65040.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Mediaevalis str. K1973002] gi|262361780|gb|ACY58501.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis D106004] gi|262366084|gb|ACY62641.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis D182038] gi|270335153|gb|EFA45930.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|294354493|gb|ADE64834.1| flagellar basal body P-ring biosynthesis protein [Yersinia pestis Z176003] Length = 254 Score = 37.2 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 134 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 187 Query: 110 LEKL 113 L Sbjct: 188 RNML 191 >gi|88855598|ref|ZP_01130261.1| putative membrane/secreted protein [marine actinobacterium PHSC20C1] gi|88814922|gb|EAR24781.1| putative membrane/secreted protein [marine actinobacterium PHSC20C1] Length = 215 Score = 37.2 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 21/156 (13%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 R I + A+ ++ +V + I V + L G V Sbjct: 12 ARARAIALDPRLAIGIVLVVASIVG------VVSLVATADDSIEVYAAGAPLTPGDRVLS 65 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSS 123 + L + + +I P ++G + PI G+ I L L++ Sbjct: 66 SDLVIRSVKLNDASQYYIARGELP-----VEGFIATRPIGAGELIPASSLGSHDGLSLTA 120 Query: 124 LL--PKGKRAATMD--------ISISSAVGGMIKPN 149 ++ P+G A T+ S + GG P Sbjct: 121 VVVSPQGGLAETVSSGASVDVWASAETEAGGYDAPG 156 >gi|88858149|ref|ZP_01132791.1| putative flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas tunicata D2] gi|88819766|gb|EAR29579.1| putative flagellar biosynthesis; assembly of basal-body periplasmic P-ring [Pseudoalteromonas tunicata D2] Length = 235 Score = 37.2 bits (85), Expect = 2.5, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 6/78 (7%) Query: 36 EVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDG 95 + + + ++I++ +A G ++T + P V + IDD+ L G Sbjct: 103 QYVQVRTTELAEIVITQNPIAKGQLITAQDIVTEMRPTHLVRNQNIDDIKM------LIG 156 Query: 96 VLVRVPILKGDPIRLEKL 113 I G+PI L ++ Sbjct: 157 SRATRSIRAGNPINLNQI 174 >gi|291613034|ref|YP_003523191.1| flagella basal body P-ring formation protein FlgA [Sideroxydans lithotrophicus ES-1] gi|291583146|gb|ADE10804.1| flagella basal body P-ring formation protein FlgA [Sideroxydans lithotrophicus ES-1] Length = 238 Score = 37.2 bits (85), Expect = 2.6, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 8/79 (10%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + +++L++ LA V++ + E G + D Q G Sbjct: 107 VQADIKVTVDMLVASRPLAQNTVLSASDFRLQN--GELGQPGILIDPQQA------IGKT 158 Query: 98 VRVPILKGDPIRLEKLVDR 116 +R PI G +R + L Sbjct: 159 LRFPIGAGQVLRQDMLRAP 177 >gi|217972592|ref|YP_002357343.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella baltica OS223] gi|217497727|gb|ACK45920.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS223] Length = 235 Score = 37.2 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 31/67 (46%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P+ +E + ++ + + +L GV V+ + K + Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSL------RGAEFDDPGKLAGVRVKRRVSKDN 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PILSNNL 174 >gi|328908302|gb|EGG28061.1| SAF domain protein [Propionibacterium sp. P08] Length = 219 Score = 37.2 bits (85), Expect = 2.7, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V+++ + G V+ + L + + H+ A+ +++G Sbjct: 55 ATSSSGREVVVAARAIEGGRVIQRSDLRTIRIDPGILP-------HEAAALAQVEGRQAS 107 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V I +G + ++ G GK + ++ SS V GM++ V VV Sbjct: 108 VRITEGTILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSE 160 Query: 160 LSERKPTVT 168 Sbjct: 161 DGTPHVLTR 169 >gi|186895110|ref|YP_001872222.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis PB1/+] gi|186698136|gb|ACC88765.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis PB1/+] Length = 259 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 139 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 192 Query: 110 LEKL 113 L Sbjct: 193 RNML 196 >gi|254421375|ref|ZP_05035093.1| NeuB family [Synechococcus sp. PCC 7335] gi|196188864|gb|EDX83828.1| NeuB family [Synechococcus sp. PCC 7335] Length = 749 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++K DLA G V+T +++ + P + + QPN EL G+ ++ I GD Sbjct: 406 LVTKCDLAPGDVITAEMIDVRS-PGQGL---------QPNRKAELIGLRIKRSIQAGDFF 455 Query: 109 RLEKL 113 L Sbjct: 456 FPSDL 460 >gi|255546923|ref|XP_002514519.1| Phospholipid-transporting ATPase, putative [Ricinus communis] gi|223546123|gb|EEF47625.1| Phospholipid-transporting ATPase, putative [Ricinus communis] Length = 1181 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Query: 164 KPTVTVVLSNIRVIAIDHNIDSDERVLVGSTATLEL-TPMQAKALVAAQSVA 214 +P V+ +R++A+ H +DE G + E +P +A ++AA+ + Sbjct: 507 EPNARVIQQFLRLLAVCHTAIADEDENTGK-VSYEAESPDEAAFVIAARELG 557 >gi|108763009|ref|YP_634642.1| adventurous gliding motility protein AgmG [Myxococcus xanthus DK 1622] gi|27804839|gb|AAO22879.1| adventurous gliding motility protein G [Myxococcus xanthus] gi|108466889|gb|ABF92074.1| adventurous gliding motility protein AgmG [Myxococcus xanthus DK 1622] Length = 712 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 42/108 (38%), Gaps = 7/108 (6%) Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 W+ + E + + D +P + + V +L+G+P L L + + Sbjct: 62 RWMQWLRERIPAHALVDASEPEVSAADSRLALMVRVLEGEPAMRAALTR-----LVAAVF 116 Query: 127 KGKRAATM--DISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLS 172 +G R + + + + G + +D + ++ + ER ++L Sbjct: 117 EGSRGLKLFAQVGLPAGQGFFAEASDRLARSLLPAPPERGKLSELLLR 164 >gi|312133843|ref|YP_004001182.1| flga [Bifidobacterium longum subsp. longum BBMN68] gi|311773134|gb|ADQ02622.1| FlgA [Bifidobacterium longum subsp. longum BBMN68] Length = 189 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 25/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ G+ A+ V + ++++ + G ++ Sbjct: 4 ALRRLTAALCVGLAVLFGLEAVLAV---------------VETEPMVVAARSIRRGDIIL 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 49 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + P A ++ Q + V+R Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189 >gi|51596007|ref|YP_070198.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 32953] gi|51589289|emb|CAH20910.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 32953] Length = 232 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|149366255|ref|ZP_01888290.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CA88-4125] gi|218928918|ref|YP_002346793.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis CO92] gi|229896238|ref|ZP_04511408.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides A] gi|229897173|ref|ZP_04512329.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229897899|ref|ZP_04513050.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. India 195] gi|229902869|ref|ZP_04517986.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|115347529|emb|CAL20438.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CO92] gi|149292668|gb|EDM42742.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis CA88-4125] gi|229680316|gb|EEO76415.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Nepal516] gi|229688940|gb|EEO81005.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. India 195] gi|229693510|gb|EEO83559.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701161|gb|EEO89190.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis Pestoides A] gi|320015471|gb|ADV99042.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 232 Score = 36.8 bits (84), Expect = 2.8, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLAAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|170725949|ref|YP_001759975.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella woodyi ATCC 51908] gi|169811296|gb|ACA85880.1| flagella basal body P-ring formation protein FlgA [Shewanella woodyi ATCC 51908] Length = 235 Score = 36.8 bits (84), Expect = 2.9, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V++++ L G +++ + + N+ Q + ++++ G V+ I Sbjct: 114 PVVVARETLGPGDLLSNDDVIIEYVDRTNL------RGQQFDDIKQVVGTRVKRRIPPNQ 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PIFSSNL 174 >gi|302038298|ref|YP_003798620.1| putative n-acetylneuraminate synthase [Candidatus Nitrospira defluvii] gi|300606362|emb|CBK42695.1| putative N-acetylneuraminate synthase [Candidatus Nitrospira defluvii] Length = 348 Score = 36.8 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 7/97 (7%) Query: 17 LVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENV 76 LV G+ A+ Q E A ++S+ + G V+TP ++ WV P Sbjct: 257 LVKGVDAVFRGRGAERQIFPEEREIVAWARESVVSEVAIPRGTVITPTMV-WVKRPSPG- 314 Query: 77 FDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G + ++++ G + + I K IR E+L Sbjct: 315 -PGAV----AAKDLKKVIGKVAKTDIPKDSQIRWEQL 346 >gi|160876209|ref|YP_001555525.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella baltica OS195] gi|160861731|gb|ABX50265.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS195] gi|315268399|gb|ADT95252.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS678] Length = 235 Score = 36.8 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P+ +E + ++ + + +L GV V+ + K Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSL------RGAEFDDPSKLAGVRVKRRVSKDY 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PILSNNL 174 >gi|322691896|ref|YP_004221466.1| hypothetical protein BLLJ_1707 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456752|dbj|BAJ67374.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 189 Score = 36.8 bits (84), Expect = 3.1, Method: Composition-based stats. Identities = 26/224 (11%), Positives = 62/224 (27%), Gaps = 43/224 (19%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 R + + A++ GI A+ V + ++++ + G ++ Sbjct: 4 ALRRLTAALCVGLAVLFGIEAVLAV---------------VETEPMVVAARSIRRGDIIL 48 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI-----RLEKLVDRG 117 ++ P + ++++ G + ++ I DPI R + G Sbjct: 49 AADVQLADMPVSAAGPSW------TGNIEDVVGKVAQIDIEAADPISTHMARDAPVAPTG 102 Query: 118 NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVI 177 + L + D V +V + N V+ Sbjct: 103 TTVIEVRLAS-------SVDDV-------LAGDQVRLVSAVGCEGADC---TLAENATVM 145 Query: 178 AIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLR 221 + + + P A ++ Q + V+R Sbjct: 146 NVGKPDAIGALGGNDRLVSFAMPPEAAAKVMELQQAGAIMAVVR 189 >gi|307327609|ref|ZP_07606794.1| SAF domain protein [Streptomyces violaceusniger Tu 4113] gi|306886721|gb|EFN17722.1| SAF domain protein [Streptomyces violaceusniger Tu 4113] Length = 228 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 33/223 (14%), Positives = 63/223 (28%), Gaps = 35/223 (15%) Query: 2 KLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVV 61 + R + V A++ G+ A V+ + + VL D+ G + Sbjct: 30 RERRWSVAALCVVLAVLCGLGAAAAVTSASDRKQ------------VLAVARDVPAGQAL 77 Query: 62 TPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 T L V + G V + KG + +L Sbjct: 78 TAADLSVAE-----VSSDAALTPVPAADKAGVIGKRPAVDLRKGGLLTTSQLAGGTG--- 129 Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT-----VVLSNIRV 176 L ++ + I A G + P D V V + + + + + Sbjct: 130 ---LGDDQQQVGVQIKRGQAPAGTLAPGDKVLAVSTPAQGDEQAAKDDGPPSTIEA---- 182 Query: 177 IAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLV 219 A+ D V L + L ++ +++LV Sbjct: 183 -AVVSVSRPDASGTVV--VNLAVAATDGPTLATRAAMGRIALV 222 >gi|78067000|ref|YP_369769.1| Pirin-like protein [Burkholderia sp. 383] gi|77967745|gb|ABB09125.1| Pirin-like protein [Burkholderia sp. 383] Length = 290 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 21/71 (29%) Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + V D + + VR I PI + + ++ +P Sbjct: 139 RYQEIPADRVPTATSPDGRARVRVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQTVP 198 Query: 127 KGKRAATMDIS 137 G R I Sbjct: 199 AGYRVFAYPID 209 >gi|307311558|ref|ZP_07591199.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium meliloti BL225C] gi|307318913|ref|ZP_07598344.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium meliloti AK83] gi|306895327|gb|EFN26082.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium meliloti AK83] gi|306899575|gb|EFN30204.1| flagella basal body P-ring formation protein FlgA [Sinorhizobium meliloti BL225C] Length = 157 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 43/101 (42%), Gaps = 15/101 (14%) Query: 16 ALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 A++ +A L+SP E +I K + G + ++LE V + Sbjct: 10 AVLFAAMASCLLSPAAALAEPPTA---------VIPKQTIYPGEKLDASMLEVVDVTNPD 60 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + DG++ ++ E+DG++ + +L G I L ++ Sbjct: 61 LRDGYVR------SIDEVDGMVTKRTLLPGRVILASALREQ 95 >gi|304409984|ref|ZP_07391603.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS183] gi|307302303|ref|ZP_07582061.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica BA175] gi|304351393|gb|EFM15792.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS183] gi|306914341|gb|EFN44762.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica BA175] Length = 235 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P+ +E + ++ DD +L GV V+ + K Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDY 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PILSNNL 174 >gi|188584241|ref|YP_001927686.1| signal transduction histidine kinase [Methylobacterium populi BJ001] gi|179347739|gb|ACB83151.1| signal transduction histidine kinase [Methylobacterium populi BJ001] Length = 1111 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 7/89 (7%) Query: 122 SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDH 181 S + G+RA ++ +S VGG + V ++ RS + P T+V I Sbjct: 782 SIVARTGERAESVS-EYASLVGGRLLTLARVQALLTRSANAGVPVATIVHDEID----AQ 836 Query: 182 NIDSDERVLVGSTATLELTPMQAKALVAA 210 + D+ L G EL+P A+ L A Sbjct: 837 ALREDQYDLSGPEV--ELSPKAAEILTLA 863 >gi|126175152|ref|YP_001051301.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella baltica OS155] gi|125998357|gb|ABN62432.1| SAF domain [Shewanella baltica OS155] Length = 235 Score = 36.8 bits (84), Expect = 3.2, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P+ +E + ++ DD +L GV V+ + K Sbjct: 114 PVVVTTETLAPGELISPSQVEIRYIEQNSLRGAEFDDPS------KLAGVRVKRRVSKDY 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PILSNNL 174 >gi|226357812|ref|YP_002787552.1| Glutamine--fructose-6-phosphate transaminase [Deinococcus deserti VCD115] gi|226320055|gb|ACO48048.1| putative Glutamine--fructose-6-phosphate transaminase [Deinococcus deserti VCD115] Length = 348 Score = 36.8 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 24/132 (18%) Query: 126 PKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV------LSNIRVIAI 179 P A T+ S +K ++ + ++ P+V + L V+A+ Sbjct: 46 PPKM-AVTIARGSSDHACSFLKYG--LETQLSLPVASIGPSVHTLYGAQLDLQGALVLAV 102 Query: 180 DHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDV 239 + +P + L A+ L++ L ++ D + + + + Sbjct: 103 SQSG---------------ASPDVVETLRMARQRGGLTVALVNVEDSALAHAAEFVLPLQ 147 Query: 240 QEEGKEIQIIKA 251 E + + K+ Sbjct: 148 CGEERAVAATKS 159 >gi|146284147|ref|YP_001174300.1| sialic acid synthase [Pseudomonas stutzeri A1501] gi|145572352|gb|ABP81458.1| sialic acid synthase [Pseudomonas stutzeri A1501] Length = 350 Score = 36.8 bits (84), Expect = 3.3, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 10/59 (16%) Query: 53 GDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 DL G +TP+ + +V G+ P + +L G ++R + P+RL+ Sbjct: 298 KDLQAGERITPDAVR-------SVRPGY---GLAPRLLDQLMGKVLRQDVKANMPVRLD 346 >gi|311694437|gb|ADP97310.1| flagella basal body P-ring formation protein FlgA [marine bacterium HP15] Length = 222 Score = 36.8 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 6/68 (8%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ L G +T +L + + G I D Q G+ VR + G + Sbjct: 100 LVAARPLTRGERITEGLLAKQSVEINSSRRGVITDSKQA------IGMEVRRAVNAGSLV 153 Query: 109 RLEKLVDR 116 + L Sbjct: 154 TPDMLSAP 161 >gi|292490649|ref|YP_003526088.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus halophilus Nc4] gi|291579244|gb|ADE13701.1| flagella basal body P-ring formation protein FlgA [Nitrosococcus halophilus Nc4] Length = 221 Score = 36.8 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 11/77 (14%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G ++ + E + G++ D Q + G ++ P+ G Sbjct: 97 KVVVATHPLVPGSPLSLADIHLERRNLEQLRQGYLRDPAQ------VAGKRLKRPLGLGA 150 Query: 107 PIRLE-----KLVDRGN 118 I E KLV RG Sbjct: 151 VITPEVLEIPKLVRRGQ 167 >gi|238751758|ref|ZP_04613246.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei ATCC 43380] gi|238710029|gb|EEQ02259.1| Flagella basal body P-ring formation protein flgA [Yersinia rohdei ATCC 43380] Length = 224 Score = 36.8 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +TP + + + G + + + G + I G P+ Sbjct: 104 VAARQLASGAKITPQDIVMKQGRLDTLPPGALLEPNFA------QGAVSLRQINAGQPLT 157 Query: 110 LEKL 113 L Sbjct: 158 RNML 161 >gi|19552105|ref|NP_600107.1| hypothetical protein NCgl0844 [Corynebacterium glutamicum ATCC 13032] Length = 184 Score = 36.8 bits (84), Expect = 3.4, Method: Composition-based stats. Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 ++ ++ G V + L A P + +++ ++ G++ + G+ Sbjct: 13 VVIVQEIPAGTKVEASDLGLQAIPTSLLPSTSY------DSIDDVVGLVAASTLSSGEIA 66 Query: 109 RLEKLVD 115 + V Sbjct: 67 TKPRFVG 73 >gi|114320051|ref|YP_741734.1| flageller protein FlgA [Alkalilimnicola ehrlichii MLHE-1] gi|114226445|gb|ABI56244.1| flagellar protein FlgA [Alkalilimnicola ehrlichii MLHE-1] Length = 238 Score = 36.8 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 20/133 (15%), Positives = 45/133 (33%), Gaps = 17/133 (12%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 ++ + VL++ L G + + + ++ + + L G Sbjct: 105 VSARVDTQVEVLVAARPLRRGERLRADSVTTERRQLASLHRPYETEAEH------LIGKE 158 Query: 98 VRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS----ISSAVGGMIKPNDHVD 153 +R + +GD I L L+ +G R+ T+ + G ++ D Sbjct: 159 LRRSLRRGDLIAGNALAAP------QLVQRG-RSVTLRAGGGRVQVTGQGKALESGVLGD 211 Query: 154 VVMVRSLSERKPT 166 +V V + S + Sbjct: 212 IVRVEAGSSGRVV 224 >gi|160879933|ref|YP_001558901.1| extracellular solute-binding protein [Clostridium phytofermentans ISDg] gi|160428599|gb|ABX42162.1| extracellular solute-binding protein family 1 [Clostridium phytofermentans ISDg] Length = 462 Score = 36.8 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMR----------LVSPHHVQTEEVITENPAKFINVLI 50 MK T + +V++ V +L AG P + ++E TE+P + + + + Sbjct: 1 MKKTSRILLVLALVISLFAGCGKKNTTGEGTTPAPTAGPTNEASKETPTESPKQNVTIKV 60 Query: 51 SKGDLAVGM 59 + + A G Sbjct: 61 AAIETAYGA 69 >gi|163852463|ref|YP_001640506.1| flagella basal body P-ring formation protein FlgA [Methylobacterium extorquens PA1] gi|163664068|gb|ABY31435.1| flagella basal body P-ring formation protein FlgA [Methylobacterium extorquens PA1] Length = 348 Score = 36.8 bits (84), Expect = 3.5, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LV Q + + V + L G + L P + V + Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAIASADLTVERRPRDGVPN------D 242 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 A + G + + P+ G +R + Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274 >gi|220910291|ref|YP_002485602.1| N-acetylneuraminate synthase [Cyanothece sp. PCC 7425] gi|219866902|gb|ACL47241.1| N-acetylneuraminate synthase [Cyanothece sp. PCC 7425] Length = 748 Score = 36.4 bits (83), Expect = 3.7, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L+ DL G V+T +++ + G QPN EL G+ + P GD Sbjct: 406 LVINCDLQPGQVITAEMIDVKS-------PG---RGLQPNRKVELIGLKAKRPFKAGDFF 455 Query: 109 RLEKL 113 L Sbjct: 456 FPSDL 460 >gi|15679046|ref|NP_276163.1| hypothetical protein MTH1028 [Methanothermobacter thermautotrophicus str. Delta H] gi|2622131|gb|AAB85524.1| unknown [Methanothermobacter thermautotrophicus str. Delta H] Length = 441 Score = 36.4 bits (83), Expect = 3.8, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 19/126 (15%) Query: 110 LEKLVDRGNGGL---SSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERK-- 164 +K V + + + + + A + I+ A GG+I D VDV + ++ + Sbjct: 241 AKKFVSQADATVLANTQIQTPDTVAVPIMITRLQAAGGLISVGDMVDVYLNQNATGNNTS 300 Query: 165 -PTVTVVLSNIRVIAIDHNIDS---DERVLVGSTATLE----------LTPMQAKALVAA 210 T T +S V+AI + DS D R+L TL + + L+ A Sbjct: 301 AATSTPRISGATVLAILRSKDSGAVDARILNTQRLTLNSITSQSENERASSTDVEQLLRA 360 Query: 211 QSVAKL 216 + L Sbjct: 361 AASGGL 366 >gi|331671800|ref|ZP_08372596.1| SAF domain protein [Escherichia coli TA280] gi|331070789|gb|EGI42148.1| SAF domain protein [Escherichia coli TA280] Length = 252 Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + + D Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSVVARDTPLTANDVELKPYNVSAQRRNVLMD 162 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + G + + G PI E+LV Sbjct: 163 P------DDAIGFSSKHALQPGRPITKEELVSP 189 >gi|291085839|ref|ZP_06354200.2| putative flagellar protein [Citrobacter youngae ATCC 29220] gi|291070006|gb|EFE08115.1| putative flagellar protein [Citrobacter youngae ATCC 29220] Length = 260 Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + P I V++ K +A V+T + L+ F N +G + + M E G+ Sbjct: 125 VAVRPDVSIPVVMPKSLIARDTVITADDLQLKKFNISNQREGLMTN------MDEAIGLT 178 Query: 98 VRVPILKGDPIRLEKLVDR 116 + + G PI +LV Sbjct: 179 SKRALQPGKPITRSELVLP 197 >gi|59889777|emb|CAH19132.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia coli] gi|284920041|emb|CBG33097.1| lateral flagellar P-ring addition protein (FlgA-like) [Escherichia coli 042] Length = 245 Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + Sbjct: 96 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 149 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + + G+ + + G PI E+LV Sbjct: 150 REVLMELDDAIGLSSKHALQPGKPITKEELVSP 182 >gi|145297253|ref|YP_001140094.1| sialic acid synthase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850025|gb|ABO88346.1| sialic acid synthase [Aeromonas salmonicida subsp. salmonicida A449] Length = 348 Score = 36.4 bits (83), Expect = 3.9, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 36/111 (32%), Gaps = 18/111 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ + L ++ S A A +A ++ + F L D+A G V Sbjct: 250 MEPSELTELIASVNTAHAALGVADYQLTQS--------EQGNRAFRRSLYLVKDIAAGEV 301 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 +T ++ V P + P L G V + P+ E Sbjct: 302 LTAAHIKSVR-PALGLP---------PADYDRLIGKRVSRDMAANQPLSWE 342 >gi|238762363|ref|ZP_04623334.1| Flagella basal body P-ring formation protein FlgA [Yersinia kristensenii ATCC 33638] gi|238699348|gb|EEP92094.1| Flagella basal body P-ring formation protein FlgA [Yersinia kristensenii ATCC 33638] Length = 249 Score = 36.4 bits (83), Expect = 4.0, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E +T P ++ V ++K L G +V P+ +E G+I + E+ Sbjct: 109 EVSVTVKPDIYLPVWVAKSTLERGKLVAPDDIELKKKNISTAQGGYITNP------DEIV 162 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G+ V+ I + +L Sbjct: 163 GLTVKRRIRGLQVVTPSQLEQP 184 >gi|326404068|ref|YP_004284150.1| flagellar basal-body ring component protein [Acidiphilium multivorum AIU301] gi|325050930|dbj|BAJ81268.1| flagellar basal-body ring component protein [Acidiphilium multivorum AIU301] Length = 332 Score = 36.4 bits (83), Expect = 4.2, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 8/105 (7%) Query: 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVP 101 A+ V++++ L G +VT N ++ + G + + G+ V Sbjct: 181 AAQAERVIVARRTLEPGEIVTINDVKMSWVARAALPQGTLTQAA------DALGMQVDRR 234 Query: 102 ILKGDPIRLEKLVDR--GNGGLSSLLPKGKRAATMDISISSAVGG 144 I G P+ + N G + L + + G Sbjct: 235 IAAGTPLSKRVVAQVMMVNRGATVNLAVEMPGLEVTAEGVALAAG 279 >gi|127512273|ref|YP_001093470.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella loihica PV-4] gi|126637568|gb|ABO23211.1| SAF domain protein [Shewanella loihica PV-4] Length = 235 Score = 36.4 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 9/67 (13%), Positives = 22/67 (32%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ L G ++ + + + + Q + + G V+ I Sbjct: 114 PVVVANQTLGPGDLIESDQIRLDYVEQSQL------RGQQFDDPVAVTGTRVKRRIPANQ 167 Query: 107 PIRLEKL 113 P+ L Sbjct: 168 PLFASNL 174 >gi|27381983|ref|NP_773512.1| flagellar basal body P-ring biosynthesis protein FlgA [Bradyrhizobium japonicum USDA 110] gi|27355153|dbj|BAC52137.1| flgA [Bradyrhizobium japonicum USDA 110] Length = 175 Score = 36.4 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 64/170 (37%), Gaps = 25/170 (14%) Query: 7 MGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNIL 66 +G++V G+ A++ +++ R+ + + + + G ++ +++ Sbjct: 22 VGLIVRGLAAVLLVLVSARVAAAEEKRLP--------------VPAVSIRAGELIRDDMI 67 Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 AF + + Q L G + R +L G PI + D +++ Sbjct: 68 TERAFAPNLLGVAQFIEGRQI-----LVGRMARRALLPGQPIPTNSVEDPWTVARGAMVK 122 Query: 127 -----KGKRAATMDISISSAVGGMIKPNDHVDV-VMVRSLSERKPTVTVV 170 G T ++ S G + P + D V++R + + TV VV Sbjct: 123 VVVEDSGLSIVTYGSAMQSGAAGALIPVRNTDTGVIIRGVVQPDGTVKVV 172 >gi|114330357|ref|YP_746579.1| flagellar basal body P-ring biosynthesis protein FlgA [Nitrosomonas eutropha C91] gi|114307371|gb|ABI58614.1| putative flagella basal body P-ring formation protein [Nitrosomonas eutropha C91] Length = 231 Score = 36.4 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 NV+ + + +G +V + + G + D Q + G + + G Sbjct: 107 ANVIHAAQPINMGKLVDTQDIVSKEVDLVRIPAGAVTDPDQ------VVGKVAVTFLASG 160 Query: 106 DPIRLEKLVDR 116 PIR +L Sbjct: 161 QPIRTHQLRAP 171 >gi|238799103|ref|ZP_04642559.1| Flagella basal body P-ring formation protein flgA [Yersinia mollaretii ATCC 43969] gi|238717050|gb|EEQ08910.1| Flagella basal body P-ring formation protein flgA [Yersinia mollaretii ATCC 43969] Length = 234 Score = 36.4 bits (83), Expect = 4.3, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 21/64 (32%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T +E + + G + + G + I G P+ Sbjct: 114 VASRQLAAGAKITAQDVEMKQGRLDTLPPGALLEPQFA------QGSVSLRQINAGQPLT 167 Query: 110 LEKL 113 L Sbjct: 168 RNML 171 >gi|111220768|ref|YP_711562.1| hypothetical protein FRAAL1311 [Frankia alni ACN14a] gi|111148300|emb|CAJ59972.1| hypothetical protein; putative signal peptide [Frankia alni ACN14a] Length = 260 Score = 36.4 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 45/113 (39%), Gaps = 13/113 (11%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++KG L G V+ L V+ + G + +++L G + P+ G+ + Sbjct: 62 VVAKGSLPAGHVIVAGDLTTVSARLDARTSG---RYYPGGRLRDLTGATLARPVDAGELV 118 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLS 161 G S+ L + + + + ++P DHVDV + + S Sbjct: 119 SGADFA--GRNTQSTRL--------VPVIVKAGRLPALEPGDHVDVYVFSAGS 161 >gi|115352292|ref|YP_774131.1| pirin domain-containing protein [Burkholderia ambifaria AMMD] gi|115282280|gb|ABI87797.1| Pirin domain protein [Burkholderia ambifaria AMMD] Length = 290 Score = 36.4 bits (83), Expect = 4.4, Method: Composition-based stats. Identities = 10/71 (14%), Positives = 21/71 (29%) Query: 67 EWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLP 126 + P + + D + + VR I PI + + ++ +P Sbjct: 139 RYQEIPADRIPSATSPDGRARVRVIAGEAFGVRAAIETRTPILYQHFTLQPGATVTQPVP 198 Query: 127 KGKRAATMDIS 137 G R + Sbjct: 199 PGYRVFAYPLD 209 >gi|254562215|ref|YP_003069310.1| flageller protein FlgA [Methylobacterium extorquens DM4] gi|254269493|emb|CAX25459.1| Flageller protein FlgA [Methylobacterium extorquens DM4] Length = 348 Score = 36.4 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 14/92 (15%), Positives = 26/92 (28%), Gaps = 6/92 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LV Q + + V + L G + L P + V + Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAIASADLTVERRPRDGVPN------D 242 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 A + G + + P+ G +R + Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274 >gi|238919255|ref|YP_002932770.1| flagella basal body P-ring formation protein FlgA, [Edwardsiella ictaluri 93-146] gi|238868824|gb|ACR68535.1| flagella basal body P-ring formation protein FlgA, putative [Edwardsiella ictaluri 93-146] Length = 223 Score = 36.4 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G +T L +++ G I D+ + L G I G PI Sbjct: 103 VAIHALPRGQNLTAAQLRLTRGRLDSLPPGTILDIAR------LSGATTLRSIGAGQPIA 156 Query: 110 LEKL 113 L Sbjct: 157 ATML 160 >gi|218546633|gb|ACK98963.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp. masoucida] Length = 91 Score = 36.4 bits (83), Expect = 4.5, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 12/35 (34%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + VL++ + G + P L W P Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77 >gi|84502380|ref|ZP_01000516.1| flagellar basal-body P-ring formation protein FlgA [Oceanicola batsensis HTCC2597] gi|84389192|gb|EAQ01989.1| flagellar basal-body P-ring formation protein FlgA [Oceanicola batsensis HTCC2597] Length = 222 Score = 36.4 bits (83), Expect = 4.6, Method: Composition-based stats. Identities = 15/109 (13%), Positives = 39/109 (35%), Gaps = 15/109 (13%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 ++V + + G + L V P + + D +L G+ V+ + + Sbjct: 96 TLDVPVPVARMLPGERIGEEDLGAVKLPLARIGAFTVTDPA------DLVGMQVKRLLTQ 149 Query: 105 GDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVD 153 G P+ + ++ ++ +G R ++ + + P +D Sbjct: 150 GRPVMTQSVIKP------LIIDRGDR-ISIRYDD--GLLALSAPGKALD 189 >gi|297566047|ref|YP_003685019.1| ABC-2 type transporter [Meiothermus silvanus DSM 9946] gi|296850496|gb|ADH63511.1| ABC-2 type transporter [Meiothermus silvanus DSM 9946] Length = 326 Score = 36.0 bits (82), Expect = 4.7, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 10/108 (9%) Query: 4 TRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTP 63 + L I V FAL GIIA +L++ ++ + E+ + L++ L+ + Sbjct: 200 SALAAIAVWLFFALFWGIIA-QLLAQAISPSDALDPESALRQAQTLVAVSRLSPNTLYAE 258 Query: 64 NILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 + + + G P +L+G ++ P+ G + L Sbjct: 259 AL-------QALLNPGV--RSLGPVLFSQLEGAVLGTPLPLGQSLLLA 297 >gi|218546631|gb|ACK98962.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp. achromogenes] Length = 90 Score = 36.0 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 12/35 (34%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + VL++ + G + P L W P Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77 >gi|317124394|ref|YP_004098506.1| N-acetylneuraminate synthase [Intrasporangium calvum DSM 43043] gi|315588482|gb|ADU47779.1| N-acetylneuraminate synthase [Intrasporangium calvum DSM 43043] Length = 345 Score = 36.0 bits (82), Expect = 4.8, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 12/63 (19%) Query: 51 SKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRL 110 + DL G V+ L + PE + +L G +V + G PI Sbjct: 293 AAVDLPAGTVLGGEHLSLLR-PEGGLSPAV-----------DLRGRVVATAVPAGAPITD 340 Query: 111 EKL 113 L Sbjct: 341 ADL 343 >gi|238755328|ref|ZP_04616671.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri ATCC 29473] gi|238706464|gb|EEP98838.1| Flagella basal body P-ring formation protein flgA [Yersinia ruckeri ATCC 29473] gi|253317691|gb|ACT22780.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia ruckeri] Length = 219 Score = 36.0 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ LA G +T + + + + G + D G L I G P+ Sbjct: 98 LVATRQLAAGEKLTEKEMTYKEGRLDTLPPGALLDARFA------KGTLALRHINAGQPL 151 Query: 109 RLEKL 113 L Sbjct: 152 TRTML 156 >gi|117919766|ref|YP_868958.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella sp. ANA-3] gi|117612098|gb|ABK47552.1| flagellar basal-body P-ring formation protein FlgA, putative [Shewanella sp. ANA-3] Length = 235 Score = 36.0 bits (82), Expect = 5.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++ LA G +++P +E + ++ Q + +L GV V+ + K Sbjct: 114 PVVVASETLAPGELISPTQVEIRYIDQNSL------RGMQFSDTSQLSGVRVKRRVAKNF 167 Query: 107 PIRLEKL 113 PI L Sbjct: 168 PIFANNL 174 >gi|238782882|ref|ZP_04626911.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970] gi|238716305|gb|EEQ08288.1| tight adherance operon protein [Yersinia bercovieri ATCC 43970] Length = 279 Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 18 VAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS--KGDLAVGMVVTPNILEWVAFPEEN 75 AG++ R + + ++ K ++++ DL+ G ++T + Sbjct: 18 AAGVLGNREDGSNTL--TNLVEPKKEKIATIMLAQSTRDLSSGTILTKDDYALKTV---M 72 Query: 76 VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGL 121 V + + + + L++ IL G I E LV + Sbjct: 73 VPESSQLIKSDLSNPENIKSHLLKTNILSGSYITNEMLVSPESSEF 118 >gi|153947896|ref|YP_001401294.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 31758] gi|152959391|gb|ABS46852.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis IP 31758] Length = 232 Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G ++ ++ + + G + D H G + + I G P+ Sbjct: 112 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 165 Query: 110 LEKL 113 L Sbjct: 166 RNML 169 >gi|161484755|ref|NP_670755.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis KIM 10] gi|161511337|ref|NP_994331.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis biovar Microtus str. 91001] gi|161760560|ref|YP_071832.2| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis IP 32953] gi|218927908|ref|YP_002345783.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pestis CO92] gi|270487677|ref|ZP_06204751.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] gi|115346519|emb|CAL19395.1| putative flagella basal body P-ring formation protein [Yersinia pestis CO92] gi|270336181|gb|EFA46958.1| flagella basal body P-ring formation protein FlgA [Yersinia pestis KIM D27] Length = 237 Score = 36.0 bits (82), Expect = 5.1, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 32/82 (39%), Gaps = 6/82 (7%) Query: 35 EEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELD 94 E V T P ++ + ++K L G V + +E V G+I D E+ Sbjct: 97 EVVATVKPDIYLPIWVAKQTLERGRKVQADDIELKKKNITGVQGGYITDP------DEIL 150 Query: 95 GVLVRVPILKGDPIRLEKLVDR 116 G+ ++ I + + +L Sbjct: 151 GLTIKRRIRQLQAVIPSQLEQP 172 >gi|325291938|ref|YP_004277802.1| flagellar basal body P-ring biosynthesis protein FlgA [Agrobacterium sp. H13-3] gi|325059791|gb|ADY63482.1| flagellar basal body P-ring biosynthesis protein FlgA [Agrobacterium sp. H13-3] Length = 162 Score = 36.0 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 44/114 (38%), Gaps = 24/114 (21%) Query: 3 LTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVT 62 T L+ + ++ F+L A ++P Q L+ + G +T Sbjct: 11 RTALVRMCLASAFSLGA-------MAPAFAQAPTA-----------LVPTRTIYPGETIT 52 Query: 63 PNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 P ++ V N+ G+ D+ E++G++ + +L G I + L + Sbjct: 53 PEQVKPVEVTNPNISAGYASDIS------EVEGMISKQTLLPGRTIPIAALREP 100 >gi|311105931|ref|YP_003978784.1| flagella basal body P-ring formation protein FlgA [Achromobacter xylosoxidans A8] gi|310760620|gb|ADP16069.1| flagella basal body P-ring formation protein FlgA [Achromobacter xylosoxidans A8] Length = 237 Score = 36.0 bits (82), Expect = 5.2, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 10/96 (10%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINV----LISKGDLAVGMVVTPNILEWVAFPEENVF 77 + R+ + T ++V ++ +A G +TP+ L + Sbjct: 85 LRSRMTVGVRCNAPKPWTAYVQATVSVPGHYYVAARLIAAGQALTPDDLAPRDGDLIALP 144 Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 G I D Q + G+ I G +R L Sbjct: 145 PGAITDP------QAVAGMTAVHRINAGQAVRSSGL 174 >gi|331000847|ref|ZP_08324493.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] gi|329570375|gb|EGG52108.1| polyribonucleotide nucleotidyltransferase [Parasutterella excrementihominis YIT 11859] Length = 735 Score = 36.0 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 49 LISKGDLAVGM---VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +++K ++ G +T + +E + + GF +P+ + L L+ PI Sbjct: 57 VVAKKEIKPGQDFFPLTVDYIE-KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRP 114 >gi|218778845|ref|YP_002430163.1| flagella basal body P-ring formation protein FlgA [Desulfatibacillum alkenivorans AK-01] gi|218760229|gb|ACL02695.1| Flagella basal body P-ring formation protein FlgA [Desulfatibacillum alkenivorans AK-01] Length = 324 Score = 36.0 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 46 INVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKG 105 V+++ L V+T + + DG + D +E+ G+ +R + G Sbjct: 199 APVVVATRKLDRMDVLTAGDVTVEMRNLSRLPDGVVTDP------KEVRGMRLRQDMDAG 252 Query: 106 DPIRLEKLVDR 116 + + L Sbjct: 253 EHMLSRMLEKP 263 >gi|218703521|ref|YP_002411040.1| lateral flagellar P-ring addition FlgA-like protein [Escherichia coli UMN026] gi|293403351|ref|ZP_06647442.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298378963|ref|ZP_06988844.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300900365|ref|ZP_07118540.1| flagella basal body P-ring formation protein FlgA [Escherichia coli MS 198-1] gi|218430618|emb|CAR11484.1| Lateral flagellar P-ring addition protein (FlgA-like) [Escherichia coli UMN026] gi|291429204|gb|EFF02224.1| conserved hypothetical protein [Escherichia coli FVEC1412] gi|298280076|gb|EFI21580.1| conserved hypothetical protein [Escherichia coli FVEC1302] gi|300356121|gb|EFJ71991.1| flagella basal body P-ring formation protein FlgA [Escherichia coli MS 198-1] Length = 245 Score = 36.0 bits (82), Expect = 5.3, Method: Composition-based stats. Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + + D Sbjct: 96 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSAQRRNVLMD 155 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + G + + G PI E+LV Sbjct: 156 P------DDAIGFSSKHALQPGRPITKEELVSP 182 >gi|227487790|ref|ZP_03918106.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227542431|ref|ZP_03972480.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227092292|gb|EEI27604.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227181629|gb|EEI62601.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 192 Score = 36.0 bits (82), Expect = 5.5, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 13/109 (11%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+ ++ G + P+ + P+ + D + D G + + +G Sbjct: 38 TVVTLSRTVSAGETLAPSDFSRTSVPQSLIPDNAVTDD------TAAHGNVAVTTLSRGQ 91 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVV 155 + G + P G + + ++ A ++K D V +V Sbjct: 92 ILTSTSYTGEG------ITPAGLTSVPLRLAD-PATSELLKHGDSVTIV 133 >gi|329767128|ref|ZP_08258656.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans M341] gi|328837853|gb|EGF87478.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans M341] Length = 485 Score = 36.0 bits (82), Expect = 5.5, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 18/37 (48%) Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAK 215 +D +DE+V T T E+ QA+ L AQ + Sbjct: 30 LDRIKATDEKVGSFITVTEEVALKQAEELDRAQEEGR 66 >gi|238793994|ref|ZP_04637612.1| Flagella basal body P-ring formation protein flgA [Yersinia intermedia ATCC 29909] gi|238726626|gb|EEQ18162.1| Flagella basal body P-ring formation protein flgA [Yersinia intermedia ATCC 29909] Length = 226 Score = 36.0 bits (82), Expect = 5.6, Method: Composition-based stats. Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LAVG + + ++ + + G + + H G + I G P+ Sbjct: 106 VAGRQLAVGEKIAASDIQMKQGRLDTLPPGALLEPHFA------QGAVSLRRINAGQPLT 159 Query: 110 LEKL 113 L Sbjct: 160 RNML 163 >gi|170024651|ref|YP_001721156.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia pseudotuberculosis YPIII] gi|169751185|gb|ACA68703.1| flagella basal body P-ring formation protein FlgA [Yersinia pseudotuberculosis YPIII] Length = 269 Score = 36.0 bits (82), Expect = 5.8, Method: Composition-based stats. Identities = 10/64 (15%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L G ++ ++ + + G + D H G + + I G P+ Sbjct: 149 VAVRRLVAGEKISAQDIQMKQGRLDTLPPGALLDAHFA------QGAVSQRQINAGQPLT 202 Query: 110 LEKL 113 L Sbjct: 203 RNML 206 >gi|123442788|ref|YP_001006765.1| flagellar basal body P-ring biosynthesis protein FlgA [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089749|emb|CAL12602.1| flagella basal body P-ring formation protein FlgA [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 200 Score = 36.0 bits (82), Expect = 6.0, Method: Composition-based stats. Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ LA G +T +E + + G + + + G + PI G P+ Sbjct: 80 VAARQLAAGAKMTLQDIEMKQGRLDTLPPGALLEPNFA------QGAVSLRPINAGQPLT 133 Query: 110 LEKL 113 L Sbjct: 134 RNML 137 >gi|126176160|ref|YP_001052309.1| SAF domain-containing protein [Shewanella baltica OS155] gi|125999365|gb|ABN63440.1| SAF domain [Shewanella baltica OS155] Length = 245 Score = 36.0 bits (82), Expect = 6.1, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + A + ++ L +VT L+W P I D + G Sbjct: 112 VRAKVALSAYIPVANKTLVRDEIVTSENLQWKMLPLTASDQDIITDDKH------ILGQA 165 Query: 98 VRVPILKGDPIRLEKLVDR 116 V I K PIR L Sbjct: 166 VARKIRKNKPIRASNLNAP 184 >gi|304412512|ref|ZP_07394118.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS183] gi|307307171|ref|ZP_07586909.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica BA175] gi|304349154|gb|EFM13566.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica OS183] gi|306910410|gb|EFN40841.1| flagella basal body P-ring formation protein FlgA [Shewanella baltica BA175] Length = 245 Score = 35.6 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + A + ++ L +VT L+W P I D + G Sbjct: 112 VRAKVALSAYIPVANKTLVRDEIVTSENLQWKMLPLTASDQDIITDDKH------ILGQA 165 Query: 98 VRVPILKGDPIRLEKLVDR 116 V I K PIR L Sbjct: 166 VARKIRKNKPIRASNLNAP 184 >gi|270284475|ref|ZP_05966188.2| putative hemagglutinin-related protein [Bifidobacterium gallicum DSM 20093] gi|270276969|gb|EFA22823.1| putative hemagglutinin-related protein [Bifidobacterium gallicum DSM 20093] Length = 257 Score = 35.6 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 9/72 (12%), Positives = 28/72 (38%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V++++ + G V+ +++ FP + + +Q + + + I Sbjct: 28 TRQVVVARHTIERGSVIGATDVQYQQFPATDSAGSTTPWADAADDLQLVSNHIAQFTITA 87 Query: 105 GDPIRLEKLVDR 116 G + L+ + + Sbjct: 88 GSVVFLDMVAQQ 99 >gi|23008124|ref|ZP_00049700.1| COG1261: Flagellar basal body P-ring biosynthesis protein [Magnetospirillum magnetotacticum MS-1] Length = 158 Score = 35.6 bits (81), Expect = 6.1, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 24/67 (35%), Gaps = 5/67 (7%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + + G + +L A+P + +A + G R +L G+P+ Sbjct: 35 VPTVTIYPGDTIKETMLRMQAYPAT-----YRARTAVIDASAAIAGRTARRMLLPGEPVP 89 Query: 110 LEKLVDR 116 + + D Sbjct: 90 VNAVDDP 96 >gi|303257193|ref|ZP_07343207.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] gi|302860684|gb|EFL83761.1| polyribonucleotide nucleotidyltransferase [Burkholderiales bacterium 1_1_47] Length = 724 Score = 35.6 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 11/59 (18%), Positives = 25/59 (42%), Gaps = 4/59 (6%) Query: 49 LISKGDLAVGM---VVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 +++K ++ G +T + +E + + GF +P+ + L L+ PI Sbjct: 46 VVAKKEIKPGQDFFPLTVDYIE-KTYAAGRIPGGFFKREGRPSEKETLTSRLIDRPIRP 103 >gi|294101406|ref|YP_003553264.1| efflux transporter, RND family, MFP subunit [Aminobacterium colombiense DSM 12261] gi|293616386|gb|ADE56540.1| efflux transporter, RND family, MFP subunit [Aminobacterium colombiense DSM 12261] Length = 426 Score = 35.6 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 20/116 (17%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 M+ RL G+ A++ + L+S + +E + E A+ + + Sbjct: 1 MRFKRLWGVA-----AILIVVGGFFLLSNRKEEQKEKVVEKIARPVKYI----------T 45 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 ++ + VF G + + + G L+ +P+ KG+PI LV + Sbjct: 46 LSAPDVVLRR-----VFPGKVLASKTADLSFRVSGPLIELPVKKGEPINKGDLVAQ 96 >gi|239995132|ref|ZP_04715656.1| flagellar basal body P-ring biosynthesis protein FlgA [Alteromonas macleodii ATCC 27126] Length = 238 Score = 35.6 bits (81), Expect = 6.2, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 39/106 (36%), Gaps = 8/106 (7%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRV 100 + +++++G ++ G V+T + L + + ++ L G ++ Sbjct: 111 QVTRTKEIVVTQGAISPGTVLTSSNLSLAKVDVRRLRHTAFTE------LEALIGARIKR 164 Query: 101 PILKGDPIRLEKL--VDRGNGGLSSLLPKGKRAATMDISISSAVGG 144 + G I+ L V +G+ + G T I+ V G Sbjct: 165 RVTDGQAIQSNMLCFVCKGDRITITAEVAGMEVKTAGIAQQDGVVG 210 >gi|304438316|ref|ZP_07398257.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304368682|gb|EFM22366.1| flagella basal body P-ring formation protein FlgA [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 254 Score = 35.6 bits (81), Expect = 6.3, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 8/101 (7%) Query: 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP 107 VL++ D+ + +TP + + + + D L G + I KG Sbjct: 131 VLVAMTDIRMDEAITPANAHVEESAVDTLPETTVTD------FDRLAGRVAGRYIRKGTV 184 Query: 108 IRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMI 146 I L G L T+ + G I Sbjct: 185 ITPTLLAMPRVLTAGSPVTLVAENGGITIRAEGVALEAGRI 225 >gi|78188940|ref|YP_379278.1| secretion protein HlyD [Chlorobium chlorochromatii CaD3] gi|78171139|gb|ABB28235.1| Secretion protein HlyD [Chlorobium chlorochromatii CaD3] Length = 353 Score = 35.6 bits (81), Expect = 6.4, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 40/106 (37%), Gaps = 17/106 (16%) Query: 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMV 60 MK R ++++GV A V G + V E P V ++ ++ Sbjct: 1 MK-RRTFIVIIAGVLASVVGGYLVLHQEKQEAPKIAVQAERPIPVSIVAVAAATVS---- 55 Query: 61 VTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 + L V G I + + + + E++G + R+ + G+ Sbjct: 56 ---DTLNLV---------GEIQAIREADIVAEVEGQVRRIAVEPGE 89 >gi|313835437|gb|EFS73151.1| SAF domain protein [Propionibacterium acnes HL037PA2] gi|314928544|gb|EFS92375.1| SAF domain protein [Propionibacterium acnes HL044PA1] gi|314970476|gb|EFT14574.1| SAF domain protein [Propionibacterium acnes HL037PA3] Length = 191 Score = 35.6 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 44/129 (34%), Gaps = 14/129 (10%) Query: 40 ENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVR 99 + V+++ + G V+ + L + + H+ A+ +++G Sbjct: 27 ATSSSGREVVVAARAIEGGRVIQRSDLRTIRIDPGILP-------HEAAALAQVEGRQAS 79 Query: 100 VPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 V I +G + ++ G GK + ++ SS V GM++ V VV Sbjct: 80 VRITEGTILTTSAVLSGSATG------SGKALVGIHLADSSMV-GMLQVGQQVSVVSPSE 132 Query: 160 LSERKPTVT 168 Sbjct: 133 DGTPHVLTR 141 >gi|50365262|ref|YP_053687.1| membrane-associated lipoprotein [Mesoplasma florum L1] gi|50363818|gb|AAT75803.1| membrane-associated lipoprotein [Mesoplasma florum L1] Length = 1476 Score = 35.6 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 12/90 (13%) Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 ++ + +S+ A + I G++ D+VD + R+ E +V + Sbjct: 1282 ADIIKADDLKISAAKGNDASAVKIQIETVLTAAGLVNGTDYVDFTVARTDDEATTSVEI- 1340 Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELT 200 ++V+ GS T +T Sbjct: 1341 -----------TGKGSDKVVDGSKVTFVVT 1359 Score = 35.6 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 12/90 (13%) Query: 111 EKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVV 170 ++ + +S+ A + I G++ D+VD + R+ E +V + Sbjct: 934 ADIIKADDLKISAAKGNDVSAVKIQIETVLTAAGLVNGTDYVDFTVARTDDEATTSVEI- 992 Query: 171 LSNIRVIAIDHNIDSDERVLVGSTATLELT 200 ++V+ GS T +T Sbjct: 993 -----------TGKGSDKVVDGSKVTFVVT 1011 >gi|323975934|gb|EGB71028.1| flagella basal body P-ring formation protein FlgA [Escherichia coli TW10509] Length = 252 Score = 35.6 bits (81), Expect = 6.6, Method: Composition-based stats. Identities = 15/93 (16%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPYNVSA------QR 156 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + E G+ + + G P+ E+LV Sbjct: 157 RDVLMDLNEAIGLSSKHALQPGRPLTKEELVSP 189 >gi|150395486|ref|YP_001325953.1| flagellar basal body P-ring biosynthesis protein FlgA [Sinorhizobium medicae WSM419] gi|150027001|gb|ABR59118.1| SAF domain protein [Sinorhizobium medicae WSM419] Length = 169 Score = 35.6 bits (81), Expect = 6.7, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 43/98 (43%), Gaps = 12/98 (12%) Query: 19 AGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFD 78 A ++A V+ + + E P +I K + G + ++LE V ++ D Sbjct: 22 AVLLAA--VASCMLPPASALAEKPTA----VIPKQTIYPGETLDASMLEVVDVTNPDLRD 75 Query: 79 GFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G++ ++ E+DG++ + +L G I L ++ Sbjct: 76 GYVR------SLDEVDGMVTKRTLLPGRVILASALREQ 107 >gi|327478805|gb|AEA82115.1| SAF domain-containing protein [Pseudomonas stutzeri DSM 4166] Length = 267 Score = 35.6 bits (81), Expect = 6.9, Method: Composition-based stats. Identities = 11/79 (13%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 +T P+ ++ + ++G + G + + L G+ ++E+ G+ Sbjct: 134 VTSQPSVWLPAVHAQGIIERGQTLGRDDLRLEPINIGKAQRGYFHR------LEEVQGMA 187 Query: 98 VRVPILKGDPIRLEKLVDR 116 + I G + L Sbjct: 188 AKRRIRAGQTLTPSLLAQP 206 >gi|219682833|ref|YP_002469216.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis AD011] gi|219620483|gb|ACL28640.1| cation transport ATPase [Bifidobacterium animalis subsp. lactis AD011] Length = 192 Score = 35.6 bits (81), Expect = 6.9, Method: Composition-based stats. Identities = 38/217 (17%), Positives = 78/217 (35%), Gaps = 42/217 (19%) Query: 5 RLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPN 64 R M + +S AL + + L + +++ DL G+V+ Sbjct: 6 RHMLLALSVGVALFCTLQCVALATATRQA---------------VVAARDLDAGLVIATG 50 Query: 65 ILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL 124 +E V P+ + + + G++ + I KGD + + + Sbjct: 51 DVEMVEMPDHDALRHAL------GCPDDAVGLVTQTRIEKGDILLTTDVGELPQ------ 98 Query: 125 LPKGKRAATMDISISSAVGGMIKP-NDHVDVVMVR---SLSERKPTVTVVLSNIRVIAID 180 +P+ + + +G P V++ + + P VV S+ V+A Sbjct: 99 VPEHHTVIDVRL----GLGQHSFPIGTVVELRSTQACADDARASPEGCVVSSHAVVMA-- 152 Query: 181 HNIDSDERVLVGSTAT-LELTPMQAKALVAAQSVAKL 216 D+ GST T + ++ ++A ++AAQ L Sbjct: 153 -QPRLDD---TGSTVTQMAMSAVEALQVLAAQEHGTL 185 >gi|262276423|ref|ZP_06054232.1| flagellar basal-body P-ring formation protein FlgA [Grimontia hollisae CIP 101886] gi|262220231|gb|EEY71547.1| flagellar basal-body P-ring formation protein FlgA [Grimontia hollisae CIP 101886] Length = 232 Score = 35.6 bits (81), Expect = 6.9, Method: Composition-based stats. Identities = 12/69 (17%), Positives = 22/69 (31%), Gaps = 6/69 (8%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V+++K L G+ + L + D L G V+ + Sbjct: 109 LTPVVVAKRPLDRGVTIAKEDLIIQ------LVDARFQRGQTYTDNATLLGSRVKRVVGI 162 Query: 105 GDPIRLEKL 113 G+PI + Sbjct: 163 GEPISGNDI 171 >gi|282899569|ref|ZP_06307533.1| Copper-translocating P-type ATPase [Cylindrospermopsis raciborskii CS-505] gi|281195448|gb|EFA70381.1| Copper-translocating P-type ATPase [Cylindrospermopsis raciborskii CS-505] Length = 805 Score = 35.6 bits (81), Expect = 7.1, Method: Composition-based stats. Identities = 21/128 (16%), Positives = 46/128 (35%), Gaps = 17/128 (13%) Query: 126 PKGKRAATMDISISSAVGGMIKPNDHV--DVVMVRSLSERKPTVTVVLSNIRVIA---ID 180 +GK + + + G+I +D + D + + +R +VLS R+ A I Sbjct: 584 KEGKTVIGVAVDDI--LAGLIAVSDTIRPDAKLTVNHLQRMGLHVIVLSGDRLEAAVVIA 641 Query: 181 HNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVWDVQ 240 + D ++ +TP Q L+ + L ++ D + + D + Sbjct: 642 QQLGLDSTNVIAG-----VTPEQKAGLIRSLQQGSL-----NVGDNSCVVAMVGDGINDA 691 Query: 241 EEGKEIQI 248 + + Sbjct: 692 PALSQADV 699 >gi|332982946|ref|YP_004464387.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON] gi|332700624|gb|AEE97565.1| hypothetical protein Mahau_2401 [Mahella australiensis 50-1 BON] Length = 332 Score = 35.6 bits (81), Expect = 7.2, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILK 104 V++ ++ M +T +++ A P V + D + + G + V + Sbjct: 29 TKQVVVVTKEINDTMEITSDMITVKALPVSAVPGDVLTDPN------AVIGKMTTVGRIP 82 Query: 105 GDPIRLEKLVDRGN 118 GD I L + Sbjct: 83 GDLIPKSILAKPED 96 >gi|153005765|ref|YP_001380090.1| type IV pilus assembly PilZ [Anaeromyxobacter sp. Fw109-5] gi|152029338|gb|ABS27106.1| type IV pilus assembly PilZ [Anaeromyxobacter sp. Fw109-5] Length = 519 Score = 35.6 bits (81), Expect = 7.5, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 42/103 (40%), Gaps = 10/103 (9%) Query: 78 DGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDIS 137 +G VH A + G + + GDPI + V G L++ + R + + + Sbjct: 27 EGATARVHPLAARDPVHGAISPADVRPGDPISAQVRVAGRAGELAAQV---WRLSPLGVE 83 Query: 138 ISSAVG-GMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 + + G + P D +DV + R T + +RV A+ Sbjct: 84 LVRSPALGTVAPGDELDVTL------RVGASTTTFAALRVAAL 120 >gi|222053733|ref|YP_002536095.1| flagella basal body P-ring formation protein FlgA [Geobacter sp. FRC-32] gi|221563022|gb|ACM18994.1| flagella basal body P-ring formation protein FlgA [Geobacter sp. FRC-32] Length = 226 Score = 35.6 bits (81), Expect = 7.5, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 6/90 (6%) Query: 22 IAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFI 81 +A+ + V+ + ++++ L G V+ + + F+ Sbjct: 77 LALIVRVDGRVERNVPVKVEVEAMAEMVVAVRPLERGEVIDAADVAVQKRGLSRLQGRFV 136 Query: 82 DDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 DV E+ G VR I +PIR + Sbjct: 137 RDV------DEVVGKRVRTAIRGNNPIRPD 160 >gi|312172056|emb|CBX80313.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora ATCC BAA-2158] Length = 222 Score = 35.6 bits (81), Expect = 7.7, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ L+ G ++ + + + + + + + G +V I+ G P+ Sbjct: 101 LVANRQLSQGEAISASDVRIEHGRLDALPARTLLNS------DDATGAIVLRAIMPGQPV 154 Query: 109 R 109 Sbjct: 155 T 155 >gi|310642358|ref|YP_003947116.1| saf domain protein [Paenibacillus polymyxa SC2] gi|309247308|gb|ADO56875.1| SAF domain protein [Paenibacillus polymyxa SC2] Length = 325 Score = 35.6 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 41/119 (34%), Gaps = 27/119 (22%) Query: 17 LVAGIIAMRLVS--------------PHHVQTEEV-----ITENPAKFINVLISKGDLAV 57 + AGI+ M VS V+ E+ + AK ++ D++ Sbjct: 17 IGAGIVGMIFVSYLILNTHQMSEIRKQAEVEAEQKWKLYEQEQRTAKTGWAVV--RDISP 74 Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 G +T N L+ + P + + + E+ G ++ + KG + + Sbjct: 75 GEQITSNDLKGIKVPGSQAPSNLLANKN------EVSGTTAKIELKKGSVLTSAMITAN 127 >gi|188579868|ref|YP_001923313.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium populi BJ001] gi|179343366|gb|ACB78778.1| FlgA, flagellar basal-body P-ring formation protein [Methylobacterium populi BJ001] Length = 162 Score = 35.6 bits (81), Expect = 7.8, Method: Composition-based stats. Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 + + G + ++L A+P + +A + G R +L G+P+ Sbjct: 39 VPTVTIYPGDTIKDSMLRMQAYPAT-----YRARTAVIDASAAIAGRTARRMLLPGEPVP 93 Query: 110 LEKLVDR 116 + + D Sbjct: 94 VNAVDDP 100 >gi|218546637|gb|ACK98964.1| flp pilus assembly protein FlpB [Aeromonas salmonicida subsp. smithia] Length = 86 Score = 35.6 bits (81), Expect = 7.9, Method: Composition-based stats. Identities = 7/35 (20%), Positives = 12/35 (34%) Query: 41 NPAKFINVLISKGDLAVGMVVTPNILEWVAFPEEN 75 + VL++ + G + P L W P Sbjct: 43 ASDRVAQVLVAAHRVQAGSFIHPEDLVWQTLPAAE 77 >gi|241889700|ref|ZP_04776998.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans ATCC 10379] gi|241863322|gb|EER67706.1| glutamyl-tRNA(Gln) amidotransferase subunit A [Gemella haemolysans ATCC 10379] Length = 485 Score = 35.3 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 20/38 (52%) Query: 179 IDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKL 216 +D +D++V T T E+ QA+AL AQ ++ Sbjct: 30 LDRIKATDDKVGSFITVTEEVALKQAEALDCAQEEGRV 67 >gi|170747257|ref|YP_001753517.1| flagella basal body P-ring formation protein FlgA [Methylobacterium radiotolerans JCM 2831] gi|170653779|gb|ACB22834.1| flagella basal body P-ring formation protein FlgA [Methylobacterium radiotolerans JCM 2831] Length = 379 Score = 35.3 bits (80), Expect = 8.0, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 6/91 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LVS Q ++ + V + +L G V + P ++V Sbjct: 215 LVSLGERQASLRVSGVVMELREVAVLTRNLNRGEPVKEGDVALEQRPRDSVAPDA----- 269 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 ++ + G + + ++ G +R+ Sbjct: 270 -QGSVTTILGEVAQNTLMAGTVLRVTDTAPP 299 >gi|300936121|ref|ZP_07151060.1| flagella basal body P-ring formation protein FlgA [Escherichia coli MS 21-1] gi|300458699|gb|EFK22192.1| flagella basal body P-ring formation protein FlgA [Escherichia coli MS 21-1] Length = 252 Score = 35.3 bits (80), Expect = 8.4, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + NV + Sbjct: 103 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTANDVELKPY---NVSAQHREV 159 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + +PN + G + + G PI E+L+ Sbjct: 160 LMEPN---DAIGFSSKHALQPGRPITKEELISP 189 >gi|332527905|ref|ZP_08403941.1| flagella basal body P-ring formation protein FlgA [Rubrivivax benzoatilyticus JA2] gi|332112481|gb|EGJ12274.1| flagella basal body P-ring formation protein FlgA [Rubrivivax benzoatilyticus JA2] Length = 185 Score = 35.3 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 44/128 (34%), Gaps = 30/128 (23%) Query: 49 LISKGDLAVGMVVTPNILEW--VAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +++ LA G V+ P L V + ++Q L+G + P+ G Sbjct: 64 VVAVTALAPGTVLAPGQLALGEVDWAAAATPPLA--------SVQALEGRTLARPLAPGQ 115 Query: 107 PIRLEKLVDR---GNGGLSSLLPKG------------KRAAT---MDISISSA--VGGMI 146 +RL+ L R G + S++ +G R + + + V G Sbjct: 116 ALRLDALKPREWFAAGEVVSVVARGDGYAVSTRGEALMRGVEGRLVRVRTEAGRIVTGWP 175 Query: 147 KPNDHVDV 154 VDV Sbjct: 176 TAEGRVDV 183 >gi|303247592|ref|ZP_07333863.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] gi|302491072|gb|EFL50966.1| conserved hypothetical protein [Desulfovibrio fructosovorans JJ] Length = 555 Score = 35.3 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 11/58 (18%), Positives = 22/58 (37%), Gaps = 12/58 (20%) Query: 176 VIAIDHNIDSDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSED 233 V+A + + + L A +L VLRS+ D P+++++ Sbjct: 509 VLAAATAVKTGQEKRFAR------------RLALADPSGRLRAVLRSVTDAAPAAAQE 554 >gi|284989454|ref|YP_003408008.1| Flp pilus assembly protein CpaB [Geodermatophilus obscurus DSM 43160] gi|284062699|gb|ADB73637.1| Flp pilus assembly protein CpaB [Geodermatophilus obscurus DSM 43160] Length = 215 Score = 35.3 bits (80), Expect = 8.5, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 47/131 (35%), Gaps = 31/131 (23%) Query: 58 GMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI--------- 108 G V+T L A+P G + D ++ G + + G+P+ Sbjct: 56 GAVLTAEDLAVAAYPPALRPTGTVADPA------DVVGRALTGGVRSGEPLTDAGLAGAA 109 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVT 168 ++L G +++ + AV +++P D VDV+ + + Sbjct: 110 LTDQLAA---GQVAAPVRP----------ADLAVSALVQPGDRVDVLATAPGAAQ---AE 153 Query: 169 VVLSNIRVIAI 179 VV + V+A Sbjct: 154 VVAAGAPVLAT 164 >gi|291085566|ref|ZP_06353375.2| flagella basal body P-ring formation protein FlgA [Citrobacter youngae ATCC 29220] gi|291071317|gb|EFE09426.1| flagella basal body P-ring formation protein FlgA [Citrobacter youngae ATCC 29220] Length = 267 Score = 35.3 bits (80), Expect = 8.6, Method: Composition-based stats. Identities = 13/87 (14%), Positives = 33/87 (37%), Gaps = 12/87 (13%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 +++ +A G +TP + + + + D++Q + + ++ G PI Sbjct: 146 VVAAAPVARGSALTPASVTLKRGRLDQLPPRAVLDLNQ------VQDAVSLRDLVPGQPI 199 Query: 109 RLEKLVDRGNGGLSSLLPKGKRAATMD 135 +L L + + G+R + Sbjct: 200 QLSMLRQ------AWRIKAGQRVLVIA 220 >gi|241895049|ref|ZP_04782345.1| integral membrane protein (PIN domain superfamily) [Weissella paramesenteroides ATCC 33313] gi|241871767|gb|EER75518.1| integral membrane protein (PIN domain superfamily) [Weissella paramesenteroides ATCC 33313] Length = 369 Score = 35.3 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 10/71 (14%) Query: 134 MDISISSAVGGMIKP----NDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDERV 189 + + + + G ++P DH+ V++V++ +ER+ V + V+A + R Sbjct: 287 VQVLNINELAGALRPRVAVGDHLSVLLVKNGTERQQAVGYLDDGTMVVA------EEGRK 340 Query: 190 LVGSTATLELT 200 + T T+E+T Sbjct: 341 YLQKTVTVEVT 351 >gi|288940403|ref|YP_003442643.1| flagella basal body P-ring formation protein FlgA [Allochromatium vinosum DSM 180] gi|288895775|gb|ADC61611.1| flagella basal body P-ring formation protein FlgA [Allochromatium vinosum DSM 180] Length = 245 Score = 35.3 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 8/79 (10%), Positives = 30/79 (37%), Gaps = 6/79 (7%) Query: 38 ITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVL 97 + + + V++ + ++ V+ P+ + + +G+ + ++ G+ Sbjct: 112 VPARIERHLPVVVLERPISRQQVIGPDDIRIERQAVSTLTNGYFTEAS------DVVGLA 165 Query: 98 VRVPILKGDPIRLEKLVDR 116 R ++ G + + R Sbjct: 166 SRRRLMPGQVLTSAHVTQR 184 >gi|304310781|ref|YP_003810379.1| Flageller protein FlgA [gamma proteobacterium HdN1] gi|301796514|emb|CBL44722.1| Flageller protein FlgA [gamma proteobacterium HdN1] Length = 227 Score = 35.3 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 18/139 (12%), Positives = 50/139 (35%), Gaps = 13/139 (9%) Query: 37 VITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGV 96 ++ + N +I+K ++ G ++ +E GF + + G+ Sbjct: 93 MMAATLRTYQNAVIAKIPISRGQIIDTQAVELRETEITPSASGFYTRIS------DTKGL 146 Query: 97 LVRVPILKGDPIRLEKLVDRG--NGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDV 154 L + I + L + G + ++ G ++ + + G I ++ Sbjct: 147 LAKRSIAANQVLTHTMLKNPDVIQRGQAVIIEAGNTQFSIRTAGVALASGAIG-----EI 201 Query: 155 VMVRSLSERKPTVTVVLSN 173 V V++ + + ++S+ Sbjct: 202 VRVKNSTSGRTVEGTIISD 220 >gi|126665162|ref|ZP_01736145.1| Modification methylase HemK [Marinobacter sp. ELB17] gi|126630532|gb|EBA01147.1| Modification methylase HemK [Marinobacter sp. ELB17] Length = 314 Score = 35.3 bits (80), Expect = 8.7, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 185 SDERVLVGSTATLELTPMQAKALVAAQSVAKLSLVL---RSIADLNPSSSEDSDVWDVQE 241 D +V TL+L P QA+ L ++L L R D+ S D+ V Q Sbjct: 108 PDTECVVEQALTLDL-PAQARVLDLGTGTGAIALALASERPDWDITASDFVDAAVALAQS 166 Query: 242 EGKE----IQIIKA 251 IQ++K+ Sbjct: 167 NAAALNLPIQVVKS 180 >gi|218531219|ref|YP_002422035.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] gi|218523522|gb|ACK84107.1| flagella basal body P-ring formation protein FlgA [Methylobacterium chloromethanicum CM4] Length = 348 Score = 35.3 bits (80), Expect = 8.9, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 6/92 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LV Q + + V + L G V L P + V + Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAVASADLTVERRPRDGVPN------D 242 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 A + G + + P+ G +R + Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274 >gi|323191534|gb|EFZ76795.1| lateral flagellar P-ring addition protein [Escherichia coli RN587/1] Length = 245 Score = 35.3 bits (80), Expect = 9.0, Method: Composition-based stats. Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 6/93 (6%) Query: 24 MRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDD 83 M + + P + V+++K +A +T N +E + Sbjct: 96 MNFTVSCPQSWQMNVAVRPDVLVPVVMAKSLVARDTPLTENDVELKPYNVSA------QR 149 Query: 84 VHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 + G + + G PI E+L+ Sbjct: 150 REVLMEPNDAIGFSSKHALQPGRPITKEELISP 182 >gi|292487935|ref|YP_003530810.1| flagella basal body P-ring formation protein FlgA [Erwinia amylovora CFBP1430] gi|292899154|ref|YP_003538523.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291199002|emb|CBJ46113.1| flagella basal body P-ring formation protein [Erwinia amylovora ATCC 49946] gi|291553357|emb|CBA20402.1| Flagella basal body P-ring formation protein flgA precursor [Erwinia amylovora CFBP1430] Length = 222 Score = 35.3 bits (80), Expect = 9.2, Method: Composition-based stats. Identities = 8/61 (13%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPI 108 L++ L+ G ++ + + + + + + + G +V I+ G P+ Sbjct: 101 LVANRQLSQGEAISASDVRIEHGRLDALPARTLLNS------DDATGAIVLRAIMPGQPV 154 Query: 109 R 109 Sbjct: 155 T 155 >gi|269138578|ref|YP_003295278.1| flagellar basal body P-ring biosynthesis protein [Edwardsiella tarda EIB202] gi|267984238|gb|ACY84067.1| flagellar basal body P-ring biosynthesis protein [Edwardsiella tarda EIB202] Length = 249 Score = 35.3 bits (80), Expect = 9.2, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 6/64 (9%) Query: 50 ISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIR 109 ++ L+ G +TP L +++ G I D+ + L G + I G PI Sbjct: 129 VAIHALSRGQNLTPAQLRLTRGRLDSLPPGTILDIAR------LSGATMLRSIGAGQPIA 182 Query: 110 LEKL 113 L Sbjct: 183 ATML 186 >gi|300311348|ref|YP_003775440.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] gi|300074133|gb|ADJ63532.1| flagellar basal body P-ring formation protein [Herbaspirillum seropedicae SmR1] Length = 254 Score = 35.3 bits (80), Expect = 9.4, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 17/96 (17%) Query: 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDP- 107 LI+ LA G ++ + + V + G I + Q + G + + + G P Sbjct: 133 LIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQ------VIGRVAGMSLRAGTPL 186 Query: 108 ----IRLEKLVDRG------NGGLSSLLPKGKRAAT 133 IR +++V +G + G + RA + Sbjct: 187 RMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALS 222 >gi|38233457|ref|NP_939224.1| hypothetical protein DIP0860 [Corynebacterium diphtheriae NCTC 13129] gi|38199717|emb|CAE49377.1| Putative membrane protein [Corynebacterium diphtheriae] Length = 227 Score = 35.3 bits (80), Expect = 9.8, Method: Composition-based stats. Identities = 35/206 (16%), Positives = 61/206 (29%), Gaps = 27/206 (13%) Query: 15 FALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEE 74 AL I+A+ L + VL + G V P+ Sbjct: 23 LALSLVILALAL----------AVFPRTESTTEVLRYATAVEAGTAVNRTHFTTAHVPQH 72 Query: 75 NVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSL---LPKG--- 128 + + + + + G +D + LSS+ LP G Sbjct: 73 LIPENALRPDDLLASAPNE--RITISAHTAGSIATAVDFLDS-SHTLSSVGNQLPFGEDQ 129 Query: 129 -KRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAIDHNIDSDE 187 + + +V +++P D VDV+ + + V A + Sbjct: 130 PINIVPIRL-AEQSVSRVVQPGDVVDVIAANDAHDPHVVAA---GGVIVFA---PVPEKN 182 Query: 188 RVLVGSTATLELTPMQAKALVAAQSV 213 GS A L P +VA+QS+ Sbjct: 183 TSSYGSDAVLIALPADQARIVASQSL 208 >gi|297183132|gb|ADI19275.1| flagellar basal body p-ring biosynthesis protein [uncultured delta proteobacterium HF0200_39L23] Length = 227 Score = 35.3 bits (80), Expect = 10.0, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 30/84 (35%), Gaps = 12/84 (14%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 +VLI+K + ++ + V + + ++ D +++ G + I + Sbjct: 104 DVLIAKDTIKEDHIIREADILKVRRNVDRMPSAYVTDE------EDILGKIASRAINPNE 157 Query: 107 PIRLEKLVDRGNGGLSSLLPKGKR 130 I+ + ++ G R Sbjct: 158 VIQETNVSAVP------VIKSGDR 175 >gi|240139800|ref|YP_002964277.1| Flageller protein FlgA [Methylobacterium extorquens AM1] gi|240009774|gb|ACS41000.1| Flageller protein FlgA [Methylobacterium extorquens AM1] Length = 348 Score = 35.3 bits (80), Expect = 10.0, Method: Composition-based stats. Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 6/92 (6%) Query: 26 LVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVH 85 LV Q + + V + L G V L P + V + Sbjct: 189 LVVLGERQASLRVAGVAVETREVAVLTRSLNRGEAVAGADLTVERRPRDGVPN------D 242 Query: 86 QPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 A + G + + P+ G +R + Sbjct: 243 VQGAPTLVVGQVAQRPLSAGAVLRSGDVAPPD 274 >gi|119775456|ref|YP_928196.1| flagellar basal body P-ring biosynthesis protein FlgA [Shewanella amazonensis SB2B] gi|119767956|gb|ABM00527.1| flagellar basal-body P-ring formation protein FlgA, putative [Shewanella amazonensis SB2B] Length = 235 Score = 35.3 bits (80), Expect = 10.0, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGD 106 V+++K L G ++ +E D + Q + +Q L G V+ I + Sbjct: 114 PVVVAKRPLGNGDLLDAESIEVRYV------DKTLLRGQQFSHLQPLYGSRVKRRIPQDA 167 Query: 107 PIRLEKL 113 PI + L Sbjct: 168 PIFADNL 174 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.309 0.151 0.410 Lambda K H 0.267 0.0462 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,838,811,972 Number of Sequences: 14124377 Number of extensions: 210241249 Number of successful extensions: 723786 Number of sequences better than 10.0: 1845 Number of HSP's better than 10.0 without gapping: 1061 Number of HSP's successfully gapped in prelim test: 1323 Number of HSP's that attempted gapping in prelim test: 719007 Number of HSP's gapped (non-prelim): 2781 length of query: 263 length of database: 4,842,793,630 effective HSP length: 136 effective length of query: 127 effective length of database: 2,921,878,358 effective search space: 371078551466 effective search space used: 371078551466 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 80 (35.3 bits)